Query 016529
Match_columns 388
No_of_seqs 611 out of 3805
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:06:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 1E-48 3.4E-53 369.7 26.1 276 110-387 5-287 (308)
2 1wf3_A GTP-binding protein; GT 100.0 2.9E-48 9.8E-53 364.8 24.5 271 113-387 5-277 (301)
3 1ega_A Protein (GTP-binding pr 100.0 2.8E-45 9.4E-50 344.9 25.6 273 113-388 6-279 (301)
4 1mky_A Probable GTP-binding pr 99.9 2.1E-27 7.3E-32 234.5 7.4 229 116-361 2-238 (439)
5 2hjg_A GTP-binding protein ENG 99.9 3.8E-27 1.3E-31 232.6 2.8 223 116-361 4-233 (436)
6 2dyk_A GTP-binding protein; GT 99.9 1.2E-24 4.1E-29 184.1 12.7 160 116-283 2-161 (161)
7 4dhe_A Probable GTP-binding pr 99.9 5.4E-24 1.8E-28 190.6 17.0 170 114-285 28-212 (223)
8 4dcu_A GTP-binding protein ENG 99.9 7E-26 2.4E-30 224.8 4.0 227 111-360 19-252 (456)
9 3gee_A MNME, tRNA modification 99.9 8.2E-25 2.8E-29 216.8 11.5 208 62-283 184-397 (476)
10 2qu8_A Putative nucleolar GTP- 99.9 7E-23 2.4E-27 184.4 19.4 170 113-283 27-204 (228)
11 3geh_A MNME, tRNA modification 99.9 1.3E-24 4.5E-29 214.6 8.7 210 62-286 176-386 (462)
12 4dkx_A RAS-related protein RAB 99.9 6.3E-24 2.1E-28 189.7 12.3 161 112-284 10-176 (216)
13 1svi_A GTP-binding protein YSX 99.9 7.6E-23 2.6E-27 179.0 18.1 166 113-283 21-194 (195)
14 1zj6_A ADP-ribosylation factor 99.9 9.7E-23 3.3E-27 177.4 18.4 164 114-290 15-184 (187)
15 3pqc_A Probable GTP-binding pr 99.9 6.9E-23 2.4E-27 178.9 17.0 167 113-284 21-194 (195)
16 2gj8_A MNME, tRNA modification 99.9 2.1E-23 7.2E-28 179.6 13.4 162 115-284 4-166 (172)
17 2aka_B Dynamin-1; fusion prote 99.9 3E-24 1E-28 201.2 8.0 205 113-322 24-291 (299)
18 1f6b_A SAR1; gtpases, N-termin 99.9 8.7E-23 3E-27 179.8 16.7 156 114-282 24-197 (198)
19 2fg5_A RAB-22B, RAS-related pr 99.9 6.1E-23 2.1E-27 179.6 14.9 162 114-286 22-188 (192)
20 2nzj_A GTP-binding protein REM 99.9 4.1E-23 1.4E-27 177.1 13.3 160 114-282 3-167 (175)
21 2h17_A ADP-ribosylation factor 99.9 1.9E-22 6.6E-27 174.7 16.8 158 111-281 17-180 (181)
22 1fzq_A ADP-ribosylation factor 99.9 4.8E-22 1.6E-26 172.4 19.2 158 114-284 15-178 (181)
23 1r2q_A RAS-related protein RAB 99.9 6.3E-23 2.2E-27 174.8 13.2 160 114-284 5-169 (170)
24 3iby_A Ferrous iron transport 99.9 4.6E-23 1.6E-27 188.9 13.1 166 116-291 2-173 (256)
25 3q72_A GTP-binding protein RAD 99.9 5.7E-23 1.9E-27 174.8 12.7 156 116-282 3-162 (166)
26 4bas_A ADP-ribosylation factor 99.9 1.6E-22 5.5E-27 177.4 15.8 161 110-283 12-188 (199)
27 1m2o_B GTP-binding protein SAR 99.9 2.9E-22 9.8E-27 175.2 17.2 156 114-282 22-190 (190)
28 1x3s_A RAS-related protein RAB 99.9 8.7E-23 3E-27 178.4 13.6 167 114-291 14-185 (195)
29 1upt_A ARL1, ADP-ribosylation 99.9 4.7E-22 1.6E-26 169.8 17.2 158 114-284 6-169 (171)
30 1c1y_A RAS-related protein RAP 99.9 2E-22 6.9E-27 171.3 14.7 157 114-282 2-165 (167)
31 2efe_B Small GTP-binding prote 99.9 1.8E-22 6.3E-27 174.1 14.4 161 114-285 11-176 (181)
32 1r8s_A ADP-ribosylation factor 99.9 3.2E-22 1.1E-26 169.8 15.5 155 117-284 2-162 (164)
33 2h57_A ADP-ribosylation factor 99.9 4.4E-22 1.5E-26 173.7 16.6 160 113-283 19-186 (190)
34 1z0j_A RAB-22, RAS-related pro 99.9 1.8E-22 6.1E-27 172.2 13.6 160 114-283 5-168 (170)
35 2b6h_A ADP-ribosylation factor 99.9 5.5E-22 1.9E-26 173.7 16.9 158 114-284 28-191 (192)
36 3a1s_A Iron(II) transport prot 99.9 1.8E-22 6.3E-27 185.2 14.4 163 114-283 4-166 (258)
37 1zd9_A ADP-ribosylation factor 99.9 6.5E-22 2.2E-26 172.5 17.2 159 114-284 21-185 (188)
38 1ek0_A Protein (GTP-binding pr 99.9 1.6E-22 5.3E-27 172.4 12.7 159 115-283 3-168 (170)
39 3tkl_A RAS-related protein RAB 99.9 3E-22 1E-26 175.2 14.8 159 114-283 15-178 (196)
40 2wji_A Ferrous iron transport 99.9 8.9E-23 3E-27 174.2 10.9 160 115-283 3-164 (165)
41 3tw8_B RAS-related protein RAB 99.9 1.6E-22 5.6E-27 174.2 12.5 157 114-283 8-170 (181)
42 1ksh_A ARF-like protein 2; sma 99.9 6.3E-22 2.2E-26 171.9 16.0 158 114-284 17-180 (186)
43 2g6b_A RAS-related protein RAB 99.9 1.9E-22 6.5E-27 173.9 12.4 160 114-284 9-174 (180)
44 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.7E-22 1.6E-26 171.0 14.8 160 114-284 6-174 (177)
45 3gj0_A GTP-binding nuclear pro 99.9 3.5E-23 1.2E-27 185.3 7.6 163 113-287 13-178 (221)
46 2fn4_A P23, RAS-related protei 99.9 3.2E-22 1.1E-26 172.4 13.2 161 111-283 5-171 (181)
47 2y8e_A RAB-protein 6, GH09086P 99.9 2.6E-22 9.1E-27 172.6 12.7 159 114-284 13-177 (179)
48 3i8s_A Ferrous iron transport 99.9 1E-22 3.5E-27 188.6 10.6 165 114-285 2-170 (274)
49 2il1_A RAB12; G-protein, GDP, 99.9 4.8E-22 1.6E-26 174.0 14.3 160 113-282 24-188 (192)
50 2lkc_A Translation initiation 99.9 2.8E-22 9.7E-27 172.5 12.6 157 114-283 7-170 (178)
51 4djt_A GTP-binding nuclear pro 99.9 3.7E-22 1.2E-26 178.1 13.4 166 114-289 10-180 (218)
52 1mh1_A RAC1; GTP-binding, GTPa 99.9 3.7E-22 1.3E-26 172.9 13.0 163 114-287 4-183 (186)
53 1z0f_A RAB14, member RAS oncog 99.9 5.2E-22 1.8E-26 170.7 13.7 159 114-283 14-177 (179)
54 4dsu_A GTPase KRAS, isoform 2B 99.9 5.4E-22 1.9E-26 172.3 13.9 158 114-283 3-165 (189)
55 2oil_A CATX-8, RAS-related pro 99.9 4.2E-22 1.4E-26 174.2 13.1 158 114-282 24-186 (193)
56 2xtp_A GTPase IMAP family memb 99.9 4E-23 1.4E-27 189.8 6.8 184 113-299 20-224 (260)
57 2bme_A RAB4A, RAS-related prot 99.9 6E-22 2E-26 171.8 13.7 158 114-283 9-172 (186)
58 3reg_A RHO-like small GTPase; 99.9 2.7E-22 9.1E-27 175.7 11.6 161 114-285 22-189 (194)
59 1jwy_B Dynamin A GTPase domain 99.9 1.2E-22 3.9E-27 191.9 9.8 204 114-322 23-297 (315)
60 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-21 3.6E-26 169.8 15.0 157 114-283 17-179 (183)
61 3kkq_A RAS-related protein M-R 99.9 6.4E-22 2.2E-26 171.3 13.7 159 111-282 14-180 (183)
62 2j1l_A RHO-related GTP-binding 99.9 5.1E-22 1.8E-26 177.0 13.4 159 114-283 33-208 (214)
63 1g16_A RAS-related protein SEC 99.9 4.7E-22 1.6E-26 169.5 12.6 157 115-283 3-164 (170)
64 1u8z_A RAS-related protein RAL 99.9 5.8E-22 2E-26 168.3 12.7 156 114-282 3-165 (168)
65 1kao_A RAP2A; GTP-binding prot 99.9 2.7E-22 9.2E-27 170.2 10.6 156 114-282 2-164 (167)
66 2x77_A ADP-ribosylation factor 99.9 1E-21 3.6E-26 171.0 14.5 157 114-283 21-183 (189)
67 2hjg_A GTP-binding protein ENG 99.9 2.3E-22 7.7E-27 198.4 11.3 169 114-284 174-349 (436)
68 3t5g_A GTP-binding protein RHE 99.9 4.1E-22 1.4E-26 172.2 11.5 159 114-285 5-170 (181)
69 1xzp_A Probable tRNA modificat 99.9 1.4E-22 4.9E-27 200.9 9.4 161 116-283 244-404 (482)
70 2iwr_A Centaurin gamma 1; ANK 99.9 9.3E-22 3.2E-26 169.5 13.4 153 114-282 6-167 (178)
71 3q3j_B RHO-related GTP-binding 99.9 3.1E-22 1.1E-26 178.4 10.6 161 113-285 25-204 (214)
72 1vg8_A RAS-related protein RAB 99.9 9E-22 3.1E-26 173.8 13.4 160 114-283 7-174 (207)
73 2atx_A Small GTP binding prote 99.9 6.6E-22 2.2E-26 173.1 12.3 157 114-282 17-191 (194)
74 2a5j_A RAS-related protein RAB 99.9 6.6E-22 2.3E-26 172.8 12.2 158 114-282 20-182 (191)
75 4gzl_A RAS-related C3 botulinu 99.9 7.7E-22 2.6E-26 174.5 12.8 158 114-282 29-203 (204)
76 3clv_A RAB5 protein, putative; 99.9 3E-21 1E-25 169.4 16.4 155 114-282 6-202 (208)
77 2hup_A RAS-related protein RAB 99.9 1.2E-21 4.1E-26 172.8 13.9 159 114-283 28-192 (201)
78 2erx_A GTP-binding protein DI- 99.9 8.9E-22 3.1E-26 168.0 12.6 158 115-284 3-167 (172)
79 2ew1_A RAS-related protein RAB 99.9 8E-22 2.7E-26 174.2 12.6 158 114-283 25-188 (201)
80 4dcu_A GTP-binding protein ENG 99.9 5.5E-22 1.9E-26 196.7 12.9 169 114-284 194-369 (456)
81 2wjg_A FEOB, ferrous iron tran 99.9 7.7E-22 2.6E-26 171.5 12.1 166 112-286 4-171 (188)
82 3oes_A GTPase rhebl1; small GT 99.9 3.7E-22 1.3E-26 175.9 10.1 159 113-284 22-187 (201)
83 3cph_A RAS-related protein SEC 99.9 1E-21 3.6E-26 174.2 12.8 159 114-283 19-181 (213)
84 3k53_A Ferrous iron transport 99.9 1.1E-21 3.8E-26 181.3 13.5 166 114-285 2-167 (271)
85 2gf9_A RAS-related protein RAB 99.9 8.9E-22 3E-26 171.6 12.1 158 115-283 22-184 (189)
86 2fh5_B SR-beta, signal recogni 99.9 1.4E-21 4.8E-26 173.7 13.6 159 114-282 6-214 (214)
87 2a9k_A RAS-related protein RAL 99.9 1.4E-21 4.8E-26 169.2 13.1 158 113-283 16-180 (187)
88 2o52_A RAS-related protein RAB 99.9 8.7E-22 3E-26 173.5 12.0 158 114-283 24-187 (200)
89 1z06_A RAS-related protein RAB 99.9 1.3E-21 4.4E-26 170.5 12.8 162 113-283 18-187 (189)
90 2ce2_X GTPase HRAS; signaling 99.9 2.6E-21 8.8E-26 163.8 14.3 156 115-282 3-163 (166)
91 2hxs_A RAB-26, RAS-related pro 99.9 4.9E-22 1.7E-26 171.0 9.9 161 114-286 5-175 (178)
92 3ihw_A Centg3; RAS, centaurin, 99.9 2.3E-21 7.7E-26 168.7 14.2 154 111-282 16-178 (184)
93 3bwd_D RAC-like GTP-binding pr 99.9 2.6E-22 8.7E-27 173.4 8.1 159 114-283 7-180 (182)
94 1zbd_A Rabphilin-3A; G protein 99.9 1.4E-21 4.8E-26 172.2 13.0 158 115-283 8-170 (203)
95 1mky_A Probable GTP-binding pr 99.9 3.9E-21 1.3E-25 189.7 17.5 169 114-284 179-355 (439)
96 3b1v_A Ferrous iron uptake tra 99.9 5.9E-22 2E-26 183.0 10.8 160 115-284 3-164 (272)
97 2fu5_C RAS-related protein RAB 99.9 3.2E-22 1.1E-26 173.2 8.4 158 114-283 7-170 (183)
98 1ky3_A GTP-binding protein YPT 99.9 1.5E-21 5.1E-26 168.3 12.5 159 114-282 7-176 (182)
99 3llu_A RAS-related GTP-binding 99.9 3.8E-21 1.3E-25 168.8 15.3 166 110-282 15-195 (196)
100 2bov_A RAla, RAS-related prote 99.9 1.6E-21 5.6E-26 171.8 12.9 158 113-283 12-176 (206)
101 3dz8_A RAS-related protein RAB 99.9 4.3E-22 1.5E-26 174.0 9.0 159 114-282 22-184 (191)
102 1z08_A RAS-related protein RAB 99.9 6.7E-22 2.3E-26 168.7 9.9 158 114-283 5-168 (170)
103 2p5s_A RAS and EF-hand domain 99.9 8.1E-22 2.8E-26 173.5 10.5 159 114-283 27-196 (199)
104 3q85_A GTP-binding protein REM 99.9 1.7E-21 6E-26 166.1 12.2 157 116-282 3-165 (169)
105 2qpt_A EH domain-containing pr 99.9 2.5E-24 8.4E-29 217.4 -6.6 232 114-367 64-340 (550)
106 2j0v_A RAC-like GTP-binding pr 99.9 1.1E-21 3.7E-26 174.3 11.2 161 114-285 8-181 (212)
107 2gco_A H9, RHO-related GTP-bin 99.9 2.8E-21 9.4E-26 170.4 13.6 159 114-282 24-198 (201)
108 2q3h_A RAS homolog gene family 99.9 1.8E-21 6.1E-26 171.3 12.4 159 114-283 19-194 (201)
109 3izq_1 HBS1P, elongation facto 99.9 1.1E-21 3.7E-26 200.3 12.5 209 114-337 166-435 (611)
110 3cbq_A GTP-binding protein REM 99.9 2.5E-21 8.5E-26 170.1 13.2 160 114-284 22-188 (195)
111 2gf0_A GTP-binding protein DI- 99.9 3.1E-21 1.1E-25 169.1 13.8 160 114-285 7-172 (199)
112 2bcg_Y Protein YP2, GTP-bindin 99.9 2.5E-21 8.7E-26 171.0 13.2 158 114-283 7-170 (206)
113 3qq5_A Small GTP-binding prote 99.9 7.2E-22 2.4E-26 192.6 10.0 164 114-285 33-197 (423)
114 2fv8_A H6, RHO-related GTP-bin 99.9 2.9E-21 9.8E-26 171.1 12.7 160 114-284 24-200 (207)
115 3bc1_A RAS-related protein RAB 99.9 4.6E-21 1.6E-25 167.0 13.7 158 114-283 10-184 (195)
116 2atv_A RERG, RAS-like estrogen 99.9 4.2E-21 1.4E-25 168.4 13.5 158 114-283 27-190 (196)
117 3o47_A ADP-ribosylation factor 99.9 6.6E-21 2.3E-25 180.9 15.9 158 114-284 164-327 (329)
118 1wxq_A GTP-binding protein; st 99.9 1.5E-22 5E-27 196.5 4.5 247 117-378 2-366 (397)
119 1z2a_A RAS-related protein RAB 99.9 1.6E-21 5.6E-26 165.8 10.5 156 114-282 4-165 (168)
120 3con_A GTPase NRAS; structural 99.9 5.1E-21 1.7E-25 166.7 13.8 158 113-283 19-182 (190)
121 3tr5_A RF-3, peptide chain rel 99.8 1.6E-22 5.4E-27 202.9 3.9 214 114-340 12-332 (528)
122 2g3y_A GTP-binding protein GEM 99.8 3.1E-21 1.1E-25 171.6 11.4 160 114-282 36-201 (211)
123 2f7s_A C25KG, RAS-related prot 99.8 3.5E-21 1.2E-25 171.5 11.7 158 114-283 24-198 (217)
124 3t1o_A Gliding protein MGLA; G 99.8 1.8E-21 6.1E-26 170.1 9.1 158 114-282 13-190 (198)
125 1m7b_A RND3/RHOE small GTP-bin 99.8 1.5E-21 5.1E-26 169.5 8.5 157 114-282 6-181 (184)
126 3cpj_B GTP-binding protein YPT 99.8 3.3E-21 1.1E-25 172.7 10.8 160 114-285 12-177 (223)
127 3c5c_A RAS-like protein 12; GD 99.8 3.1E-21 1.1E-25 168.1 9.7 155 114-282 20-184 (187)
128 2e87_A Hypothetical protein PH 99.8 3.9E-20 1.3E-24 177.7 18.0 166 114-283 166-335 (357)
129 2yc2_C IFT27, small RAB-relate 99.8 3.5E-21 1.2E-25 169.9 9.1 159 114-283 19-191 (208)
130 2x2e_A Dynamin-1; nitration, h 99.8 4.5E-22 1.5E-26 191.0 3.5 203 114-321 30-295 (353)
131 3l0i_B RAS-related protein RAB 99.8 1.6E-22 5.6E-27 177.9 0.2 159 114-284 32-196 (199)
132 1gwn_A RHO-related GTP-binding 99.8 3.2E-21 1.1E-25 170.8 8.6 157 114-282 27-202 (205)
133 3lvq_E ARF-GAP with SH3 domain 99.8 4E-20 1.4E-24 185.4 16.7 160 113-285 320-485 (497)
134 1lnz_A SPO0B-associated GTP-bi 99.8 5.4E-21 1.8E-25 181.8 9.6 169 116-292 159-340 (342)
135 3zvr_A Dynamin-1; hydrolase, D 99.8 6.8E-21 2.3E-25 196.2 10.5 211 114-330 50-334 (772)
136 3lxw_A GTPase IMAP family memb 99.8 1.4E-20 4.8E-25 171.5 11.1 178 114-294 20-219 (247)
137 2cjw_A GTP-binding protein GEM 99.8 1.2E-20 4.2E-25 165.2 10.1 161 114-283 5-171 (192)
138 3j2k_7 ERF3, eukaryotic polype 99.8 5E-20 1.7E-24 181.4 15.4 152 114-276 16-217 (439)
139 3r7w_A Gtpase1, GTP-binding pr 99.8 1E-19 3.6E-24 171.1 16.1 164 115-283 3-180 (307)
140 2cxx_A Probable GTP-binding pr 99.8 1.1E-19 3.7E-24 157.9 15.0 162 116-284 2-184 (190)
141 2zej_A Dardarin, leucine-rich 99.8 6.4E-20 2.2E-24 159.3 12.8 159 116-284 3-178 (184)
142 3th5_A RAS-related C3 botulinu 99.7 7.2E-22 2.5E-26 174.4 0.0 158 114-282 29-203 (204)
143 2qtf_A Protein HFLX, GTP-bindi 99.8 8.7E-20 3E-24 175.1 13.6 169 117-287 181-357 (364)
144 1wb1_A Translation elongation 99.8 1.4E-19 4.7E-24 180.2 14.7 160 113-283 17-188 (482)
145 3sjy_A Translation initiation 99.8 2.1E-19 7.2E-24 175.4 15.4 163 114-286 7-194 (403)
146 3izy_P Translation initiation 99.8 3.6E-21 1.2E-25 192.4 2.1 159 114-284 3-168 (537)
147 3t5d_A Septin-7; GTP-binding p 99.8 3E-19 1E-23 165.3 14.6 167 115-284 8-204 (274)
148 1zo1_I IF2, translation initia 99.8 4.5E-21 1.5E-25 190.2 1.6 222 114-364 3-231 (501)
149 3cb4_D GTP-binding protein LEP 99.8 2.7E-19 9.3E-24 181.4 14.6 197 115-337 4-222 (599)
150 2wkq_A NPH1-1, RAS-related C3 99.8 1.8E-19 6.1E-24 170.7 12.3 159 114-283 154-329 (332)
151 2ywe_A GTP-binding protein LEP 99.8 4.3E-19 1.5E-23 179.6 15.2 200 114-339 5-226 (600)
152 3mca_A HBS1, elongation factor 99.8 2.8E-20 9.7E-25 189.3 2.5 159 114-283 176-396 (592)
153 3lxx_A GTPase IMAP family memb 99.8 1.4E-18 4.8E-23 157.4 13.3 169 113-284 27-214 (239)
154 1kk1_A EIF2gamma; initiation o 99.8 4.2E-18 1.4E-22 166.5 17.4 163 114-286 9-202 (410)
155 3p26_A Elongation factor 1 alp 99.8 8.3E-20 2.8E-24 182.2 5.3 150 114-273 32-227 (483)
156 2rdo_7 EF-G, elongation factor 99.8 2.1E-18 7.2E-23 178.9 15.9 234 114-363 9-374 (704)
157 1s0u_A EIF-2-gamma, translatio 99.8 4.9E-18 1.7E-22 165.9 17.5 162 114-285 7-199 (408)
158 3vqt_A RF-3, peptide chain rel 99.8 1.2E-19 4E-24 183.0 5.9 232 114-361 30-371 (548)
159 2elf_A Protein translation elo 99.8 1.8E-18 6.3E-23 166.3 13.6 146 117-284 23-180 (370)
160 1f60_A Elongation factor EEF1A 99.8 5.4E-20 1.8E-24 182.2 2.8 149 114-273 6-201 (458)
161 1pui_A ENGB, probable GTP-bind 99.8 9.4E-18 3.2E-22 148.4 16.8 167 114-286 25-201 (210)
162 2c78_A Elongation factor TU-A; 99.8 1.1E-18 3.8E-23 170.4 11.3 162 114-286 10-214 (405)
163 1dar_A EF-G, elongation factor 99.8 2.4E-18 8.1E-23 178.3 14.3 117 114-241 11-144 (691)
164 2h5e_A Peptide chain release f 99.8 6.2E-18 2.1E-22 169.8 16.4 208 114-340 12-333 (529)
165 1g7s_A Translation initiation 99.8 3.4E-18 1.2E-22 173.5 14.0 205 114-340 4-266 (594)
166 3dpu_A RAB family protein; roc 99.8 1.4E-18 4.9E-23 175.5 11.1 160 113-287 39-211 (535)
167 3c5h_A Glucocorticoid receptor 99.8 7.7E-19 2.6E-23 160.8 7.2 168 112-282 16-253 (255)
168 1d2e_A Elongation factor TU (E 99.8 1E-17 3.5E-22 163.0 15.5 160 115-285 3-196 (397)
169 2f9l_A RAB11B, member RAS onco 99.8 7.6E-18 2.6E-22 148.0 13.2 157 115-283 5-167 (199)
170 1zun_B Sulfate adenylate trans 99.8 1.1E-17 3.7E-22 164.7 15.6 148 115-273 24-213 (434)
171 3r7w_B Gtpase2, GTP-binding pr 99.7 9.1E-18 3.1E-22 157.1 13.1 158 117-284 1-174 (331)
172 3p32_A Probable GTPase RV1496/ 99.7 7.5E-19 2.6E-23 168.6 5.6 184 114-317 78-317 (355)
173 2xex_A Elongation factor G; GT 99.7 6.9E-18 2.4E-22 174.8 12.9 117 114-241 9-142 (693)
174 1jny_A EF-1-alpha, elongation 99.7 1.6E-17 5.6E-22 163.5 12.4 149 114-273 5-202 (435)
175 2www_A Methylmalonic aciduria 99.7 8.2E-19 2.8E-23 167.7 2.5 186 115-321 74-316 (349)
176 2dy1_A Elongation factor G; tr 99.7 1.3E-17 4.6E-22 172.0 11.5 200 114-338 8-316 (665)
177 2j69_A Bacterial dynamin-like 99.7 1.2E-17 4E-22 173.2 10.6 162 114-283 68-324 (695)
178 3avx_A Elongation factor TS, e 99.7 8.3E-17 2.8E-21 170.5 16.1 162 113-285 294-487 (1289)
179 1oix_A RAS-related protein RAB 99.7 5.9E-17 2E-21 141.5 12.6 156 115-282 29-190 (191)
180 1nrj_B SR-beta, signal recogni 99.7 3.2E-16 1.1E-20 139.3 15.5 144 114-270 11-170 (218)
181 2p67_A LAO/AO transport system 99.7 1.7E-17 5.7E-22 158.2 5.9 184 114-318 55-295 (341)
182 1h65_A Chloroplast outer envel 99.7 3.3E-16 1.1E-20 144.5 13.4 127 114-242 38-170 (270)
183 1r5b_A Eukaryotic peptide chai 99.7 8.4E-17 2.9E-21 159.7 10.0 150 115-275 43-243 (467)
184 4a9a_A Ribosome-interacting GT 99.7 2E-16 6.7E-21 151.5 12.2 119 116-238 73-194 (376)
185 3def_A T7I23.11 protein; chlor 99.7 5.6E-16 1.9E-20 142.3 11.9 125 114-240 35-165 (262)
186 3t34_A Dynamin-related protein 99.6 8.4E-16 2.9E-20 147.6 12.9 160 114-277 33-254 (360)
187 2qag_A Septin-2, protein NEDD5 99.6 5.7E-16 1.9E-20 148.7 11.5 166 115-284 37-237 (361)
188 1udx_A The GTP-binding protein 99.6 9.7E-16 3.3E-20 148.9 12.7 163 117-286 159-327 (416)
189 2ged_A SR-beta, signal recogni 99.6 8E-16 2.7E-20 133.9 8.6 125 114-250 47-180 (193)
190 3j25_A Tetracycline resistance 99.6 2.6E-16 9E-21 161.6 6.2 196 116-336 3-278 (638)
191 1yrb_A ATP(GTP)binding protein 99.6 1.8E-15 6.3E-20 138.4 9.9 167 113-285 12-258 (262)
192 4fn5_A EF-G 1, elongation fact 99.6 2E-15 6.8E-20 157.1 11.3 116 114-240 12-151 (709)
193 2qm8_A GTPase/ATPase; G protei 99.6 1.4E-15 4.8E-20 144.5 8.8 185 114-319 54-296 (337)
194 2wsm_A Hydrogenase expression/ 99.6 2.9E-15 9.9E-20 133.5 9.5 153 114-284 29-214 (221)
195 1jal_A YCHF protein; nucleotid 99.5 1.7E-13 5.6E-18 130.5 15.3 89 116-207 3-108 (363)
196 2qag_C Septin-7; cell cycle, c 99.5 1E-13 3.4E-18 134.8 13.1 164 116-284 32-227 (418)
197 2qnr_A Septin-2, protein NEDD5 99.5 1E-13 3.5E-18 129.6 11.6 163 115-283 18-213 (301)
198 2v3c_C SRP54, signal recogniti 99.5 3.9E-16 1.3E-20 152.7 -7.0 244 116-379 100-414 (432)
199 2dby_A GTP-binding protein; GD 99.4 2.7E-13 9.2E-18 129.8 9.7 87 116-207 2-111 (368)
200 1n0u_A EF-2, elongation factor 99.4 7.4E-14 2.5E-18 147.5 5.5 115 114-239 18-163 (842)
201 2hf9_A Probable hydrogenase ni 99.4 7.6E-13 2.6E-17 118.1 9.9 57 226-282 164-222 (226)
202 2j37_W Signal recognition part 99.4 2.5E-15 8.4E-20 149.2 -8.1 254 114-379 100-422 (504)
203 2ohf_A Protein OLA1, GTP-bindi 99.3 3.2E-13 1.1E-17 129.7 3.9 189 115-325 22-231 (396)
204 1tq4_A IIGP1, interferon-induc 99.3 1.4E-11 4.7E-16 119.4 13.8 190 114-313 68-288 (413)
205 3ec1_A YQEH GTPase; atnos1, at 99.3 8.2E-14 2.8E-18 133.9 -3.2 149 116-271 163-318 (369)
206 4fid_A G protein alpha subunit 99.3 7E-12 2.4E-16 118.2 9.8 118 156-282 154-326 (340)
207 3h2y_A GTPase family protein; 99.3 1.6E-13 5.5E-18 131.8 -2.8 143 116-265 161-311 (368)
208 3ohm_A Guanine nucleotide-bind 99.2 4.4E-11 1.5E-15 112.4 11.9 118 156-282 160-316 (327)
209 2qag_B Septin-6, protein NEDD5 99.2 1.4E-10 4.9E-15 112.3 13.9 146 117-265 44-217 (427)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.2E-12 7.7E-17 124.1 -1.9 178 115-324 20-232 (392)
211 1u0l_A Probable GTPase ENGC; p 99.1 2.5E-10 8.5E-15 106.6 10.6 135 130-280 32-169 (301)
212 1cip_A Protein (guanine nucleo 99.1 8E-11 2.7E-15 112.1 6.6 118 156-282 186-342 (353)
213 1puj_A YLQF, conserved hypothe 99.1 1.8E-11 6.2E-16 113.1 2.1 155 187-361 15-175 (282)
214 3h2y_A GTPase family protein; 99.0 4.9E-11 1.7E-15 114.5 2.7 94 185-282 59-158 (368)
215 3sop_A Neuronal-specific septi 99.0 1.2E-09 4E-14 100.3 11.7 131 116-249 3-163 (270)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 1.1E-10 3.9E-15 112.0 3.4 142 188-361 64-222 (369)
217 1zcb_A G alpha I/13; GTP-bindi 99.0 3.3E-10 1.1E-14 108.2 6.2 117 157-282 195-351 (362)
218 1azs_C GS-alpha; complex (lyas 98.9 1.6E-09 5.5E-14 104.4 9.2 117 157-282 211-383 (402)
219 2xtz_A Guanine nucleotide-bind 98.9 9.3E-10 3.2E-14 104.7 7.2 113 161-282 181-343 (354)
220 3l82_B F-box only protein 4; T 98.9 1.3E-08 4.6E-13 88.3 10.5 100 185-284 115-223 (227)
221 3cnl_A YLQF, putative uncharac 98.8 6.3E-11 2.2E-15 108.3 -5.0 136 188-362 14-155 (262)
222 1puj_A YLQF, conserved hypothe 98.8 5.9E-09 2E-13 96.2 5.7 60 114-176 119-178 (282)
223 3dm5_A SRP54, signal recogniti 98.7 5.8E-08 2E-12 94.5 11.8 147 115-274 100-281 (443)
224 1f5n_A Interferon-induced guan 98.7 1.5E-08 5.2E-13 102.1 6.9 60 114-175 37-103 (592)
225 2yv5_A YJEQ protein; hydrolase 98.7 5E-08 1.7E-12 91.0 8.8 85 191-280 75-165 (302)
226 3l2o_B F-box only protein 4; s 98.5 2E-07 6.9E-12 84.8 8.8 98 187-284 202-308 (312)
227 3cnl_A YLQF, putative uncharac 98.5 3.5E-08 1.2E-12 90.1 3.4 58 116-176 100-157 (262)
228 3kl4_A SRP54, signal recogniti 98.4 5.2E-07 1.8E-11 87.7 9.2 145 115-272 97-278 (433)
229 3szr_A Interferon-induced GTP- 98.4 8.3E-07 2.8E-11 90.5 9.1 78 163-242 147-230 (608)
230 1j8m_F SRP54, signal recogniti 98.3 4.4E-06 1.5E-10 77.4 11.2 146 115-274 98-281 (297)
231 3q5d_A Atlastin-1; G protein, 98.1 6.4E-06 2.2E-10 80.3 8.4 63 113-176 65-153 (447)
232 2xxa_A Signal recognition part 97.9 1.7E-05 5.7E-10 77.4 8.1 118 115-240 100-254 (433)
233 1t9h_A YLOQ, probable GTPase E 97.9 3.7E-06 1.3E-10 78.1 2.8 82 192-278 83-171 (307)
234 3e70_C DPA, signal recognition 97.7 0.00017 5.8E-09 67.6 10.2 147 115-274 129-310 (328)
235 1rj9_A FTSY, signal recognitio 97.6 0.00038 1.3E-08 64.6 11.7 122 115-240 102-261 (304)
236 2rcn_A Probable GTPase ENGC; Y 97.6 0.00015 5.1E-09 68.6 8.5 81 192-278 127-213 (358)
237 2px0_A Flagellar biosynthesis 97.5 0.00018 6.3E-09 66.4 7.9 117 115-240 105-253 (296)
238 2yhs_A FTSY, cell division pro 97.5 0.00049 1.7E-08 67.6 11.0 147 117-273 295-479 (503)
239 1zu4_A FTSY; GTPase, signal re 97.4 0.001 3.6E-08 62.0 11.8 117 116-240 106-268 (320)
240 4dzz_A Plasmid partitioning pr 97.4 0.00027 9.1E-09 61.1 6.4 111 117-239 3-143 (206)
241 1t9h_A YLOQ, probable GTPase E 97.3 7.1E-05 2.4E-09 69.4 1.9 55 117-175 175-236 (307)
242 2ffh_A Protein (FFH); SRP54, s 97.1 0.0016 5.6E-08 63.0 9.8 118 116-240 99-251 (425)
243 1nij_A Hypothetical protein YJ 97.1 0.0018 6.3E-08 60.3 9.5 25 114-138 3-27 (318)
244 1vma_A Cell division protein F 97.0 0.0026 8.9E-08 58.9 9.5 21 116-136 105-125 (306)
245 2rcn_A Probable GTPase ENGC; Y 97.0 0.00038 1.3E-08 65.9 3.9 24 117-140 217-240 (358)
246 3b9q_A Chloroplast SRP recepto 97.0 0.0028 9.7E-08 58.6 9.2 119 117-239 102-259 (302)
247 2og2_A Putative signal recogni 97.0 0.0052 1.8E-07 58.1 11.2 120 117-240 159-317 (359)
248 2yv5_A YJEQ protein; hydrolase 97.0 0.00085 2.9E-08 62.1 5.7 23 116-139 166-188 (302)
249 3ney_A 55 kDa erythrocyte memb 96.9 0.00019 6.4E-09 62.1 0.6 41 113-153 17-58 (197)
250 1u0l_A Probable GTPase ENGC; p 96.8 0.00087 3E-08 62.0 4.6 25 116-140 170-194 (301)
251 3end_A Light-independent proto 96.8 0.0047 1.6E-07 57.0 9.6 67 162-238 156-225 (307)
252 3cwq_A Para family chromosome 96.8 0.0028 9.7E-08 55.1 7.5 111 117-240 2-134 (209)
253 1bif_A 6-phosphofructo-2-kinas 96.7 0.00014 4.9E-09 71.7 -1.4 103 114-222 38-147 (469)
254 3k9g_A PF-32 protein; ssgcid, 96.6 0.014 4.7E-07 52.6 11.1 66 162-238 144-209 (267)
255 1ls1_A Signal recognition part 96.6 0.0069 2.4E-07 55.7 9.2 117 116-240 99-251 (295)
256 3kjh_A CO dehydrogenase/acetyl 96.3 0.0023 7.9E-08 56.8 3.9 65 161-237 130-194 (254)
257 1kgd_A CASK, peripheral plasma 96.3 0.0018 6.1E-08 54.9 2.9 23 116-138 6-28 (180)
258 1ye8_A Protein THEP1, hypothet 96.3 0.0017 5.8E-08 55.1 2.5 22 117-138 2-23 (178)
259 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0077 2.6E-07 58.4 7.3 23 114-136 66-88 (457)
260 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.13 4.4E-06 46.1 15.0 22 116-137 5-26 (260)
261 1ex7_A Guanylate kinase; subst 96.1 0.00096 3.3E-08 57.1 0.2 21 118-138 4-24 (186)
262 1lvg_A Guanylate kinase, GMP k 96.1 0.0022 7.5E-08 55.3 2.3 22 117-138 6-27 (198)
263 3ea0_A ATPase, para family; al 95.9 0.079 2.7E-06 46.6 12.0 68 163-241 119-187 (245)
264 1zp6_A Hypothetical protein AT 95.9 0.0047 1.6E-07 52.4 3.6 22 117-138 11-32 (191)
265 1znw_A Guanylate kinase, GMP k 95.9 0.0032 1.1E-07 54.5 2.5 22 117-138 22-43 (207)
266 3a00_A Guanylate kinase, GMP k 95.8 0.0032 1.1E-07 53.6 2.2 22 117-138 3-24 (186)
267 3c8u_A Fructokinase; YP_612366 95.8 0.0042 1.5E-07 53.8 2.9 24 115-138 22-45 (208)
268 3tr0_A Guanylate kinase, GMP k 95.8 0.0045 1.5E-07 53.2 2.9 22 117-138 9-30 (205)
269 3tif_A Uncharacterized ABC tra 95.8 0.005 1.7E-07 54.7 3.2 23 117-139 33-55 (235)
270 1z6g_A Guanylate kinase; struc 95.8 0.0037 1.3E-07 54.8 2.3 22 117-138 25-46 (218)
271 4gp7_A Metallophosphoesterase; 95.7 0.0047 1.6E-07 51.8 2.8 22 117-138 11-32 (171)
272 2pcj_A ABC transporter, lipopr 95.7 0.0055 1.9E-07 54.0 3.3 23 117-139 32-54 (224)
273 3cio_A ETK, tyrosine-protein k 95.7 0.094 3.2E-06 48.1 11.6 64 164-239 215-279 (299)
274 1s96_A Guanylate kinase, GMP k 95.7 0.005 1.7E-07 54.1 2.8 22 117-138 18-39 (219)
275 1knq_A Gluconate kinase; ALFA/ 95.6 0.0067 2.3E-07 50.7 3.3 23 115-137 8-30 (175)
276 3tau_A Guanylate kinase, GMP k 95.6 0.006 2.1E-07 52.9 2.9 23 116-138 9-31 (208)
277 2cbz_A Multidrug resistance-as 95.6 0.0067 2.3E-07 53.9 3.2 23 117-139 33-55 (237)
278 2onk_A Molybdate/tungstate ABC 95.5 0.0067 2.3E-07 54.0 3.2 24 116-139 25-48 (240)
279 2oze_A ORF delta'; para, walke 95.5 0.022 7.5E-07 52.1 6.7 68 162-240 154-226 (298)
280 3gfo_A Cobalt import ATP-bindi 95.5 0.0071 2.4E-07 55.0 3.2 23 117-139 36-58 (275)
281 1b0u_A Histidine permease; ABC 95.5 0.0073 2.5E-07 54.6 3.2 23 117-139 34-56 (262)
282 1g6h_A High-affinity branched- 95.5 0.0073 2.5E-07 54.4 3.2 23 117-139 35-57 (257)
283 2ff7_A Alpha-hemolysin translo 95.5 0.0074 2.5E-07 54.0 3.2 23 117-139 37-59 (247)
284 1mv5_A LMRA, multidrug resista 95.5 0.0074 2.5E-07 53.8 3.2 23 117-139 30-52 (243)
285 4g1u_C Hemin import ATP-bindin 95.5 0.0073 2.5E-07 54.7 3.2 23 117-139 39-61 (266)
286 1sgw_A Putative ABC transporte 95.4 0.0072 2.5E-07 52.8 3.0 23 117-139 37-59 (214)
287 2pze_A Cystic fibrosis transme 95.4 0.0077 2.7E-07 53.2 3.2 23 117-139 36-58 (229)
288 1htw_A HI0065; nucleotide-bind 95.4 0.0065 2.2E-07 50.4 2.5 23 117-139 35-57 (158)
289 3asz_A Uridine kinase; cytidin 95.4 0.0069 2.4E-07 52.4 2.8 23 116-138 7-29 (211)
290 1ji0_A ABC transporter; ATP bi 95.4 0.0085 2.9E-07 53.3 3.2 23 117-139 34-56 (240)
291 2olj_A Amino acid ABC transpor 95.4 0.0084 2.9E-07 54.2 3.2 23 117-139 52-74 (263)
292 2ghi_A Transport protein; mult 95.3 0.0086 2.9E-07 54.0 3.2 22 117-138 48-69 (260)
293 2j41_A Guanylate kinase; GMP, 95.3 0.008 2.7E-07 51.6 2.9 22 117-138 8-29 (207)
294 2qi9_C Vitamin B12 import ATP- 95.3 0.0087 3E-07 53.6 3.2 23 117-139 28-50 (249)
295 1vpl_A ABC transporter, ATP-bi 95.3 0.0089 3E-07 53.8 3.2 23 117-139 43-65 (256)
296 2bbw_A Adenylate kinase 4, AK4 95.3 0.0099 3.4E-07 52.9 3.5 21 116-136 28-48 (246)
297 2d2e_A SUFC protein; ABC-ATPas 95.3 0.009 3.1E-07 53.5 3.2 22 117-138 31-52 (250)
298 3b85_A Phosphate starvation-in 95.3 0.0067 2.3E-07 52.8 2.3 22 117-138 24-45 (208)
299 2ixe_A Antigen peptide transpo 95.3 0.0092 3.1E-07 54.2 3.2 23 117-139 47-69 (271)
300 2ihy_A ABC transporter, ATP-bi 95.3 0.0094 3.2E-07 54.3 3.2 23 117-139 49-71 (279)
301 2zu0_C Probable ATP-dependent 95.2 0.0095 3.2E-07 54.0 3.2 22 117-138 48-69 (267)
302 4b4t_J 26S protease regulatory 95.2 0.055 1.9E-06 51.7 8.6 22 117-138 184-205 (405)
303 2eyu_A Twitching motility prot 95.2 0.0093 3.2E-07 53.8 2.9 24 115-138 25-48 (261)
304 1np6_A Molybdopterin-guanine d 95.2 0.012 3.9E-07 49.7 3.3 24 115-138 6-29 (174)
305 2nq2_C Hypothetical ABC transp 95.2 0.01 3.5E-07 53.3 3.2 23 117-139 33-55 (253)
306 4b4t_L 26S protease subunit RP 95.2 0.059 2E-06 52.2 8.7 22 117-138 217-238 (437)
307 2qor_A Guanylate kinase; phosp 95.2 0.0096 3.3E-07 51.3 2.9 22 116-137 13-34 (204)
308 2yz2_A Putative ABC transporte 95.2 0.011 3.6E-07 53.6 3.2 23 117-139 35-57 (266)
309 3lw7_A Adenylate kinase relate 95.2 0.011 3.7E-07 49.0 3.1 19 117-135 3-21 (179)
310 1d2n_A N-ethylmaleimide-sensit 95.2 0.11 3.9E-06 46.5 10.2 24 114-137 63-86 (272)
311 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.16 5.5E-06 45.0 11.0 22 116-137 40-61 (262)
312 4eun_A Thermoresistant glucoki 95.1 0.0097 3.3E-07 51.1 2.8 22 116-137 30-51 (200)
313 2v9p_A Replication protein E1; 95.1 0.0084 2.9E-07 55.3 2.5 21 117-137 128-148 (305)
314 2i3b_A HCR-ntpase, human cance 95.1 0.0076 2.6E-07 51.6 2.0 22 117-138 3-24 (189)
315 1kag_A SKI, shikimate kinase I 95.1 0.01 3.6E-07 49.4 2.8 21 117-137 6-26 (173)
316 2bdt_A BH3686; alpha-beta prot 95.1 0.0094 3.2E-07 50.6 2.5 21 117-137 4-24 (189)
317 3kb2_A SPBC2 prophage-derived 95.0 0.012 4.1E-07 48.8 3.0 21 117-137 3-23 (173)
318 3q9l_A Septum site-determining 95.0 0.08 2.7E-06 47.0 8.7 66 162-238 113-185 (260)
319 1y63_A LMAJ004144AAA protein; 95.0 0.016 5.6E-07 49.0 3.8 25 114-138 9-33 (184)
320 2pjz_A Hypothetical protein ST 95.0 0.013 4.3E-07 53.0 3.2 23 117-139 32-54 (263)
321 2wwf_A Thymidilate kinase, put 95.0 0.018 6.1E-07 49.6 4.1 24 114-137 9-32 (212)
322 2bbs_A Cystic fibrosis transme 94.9 0.014 4.9E-07 53.5 3.3 23 117-139 66-88 (290)
323 3lnc_A Guanylate kinase, GMP k 94.9 0.0089 3.1E-07 52.6 1.9 22 117-138 29-51 (231)
324 2f1r_A Molybdopterin-guanine d 94.9 0.006 2.1E-07 51.3 0.7 22 117-138 4-25 (171)
325 3nh6_A ATP-binding cassette SU 94.9 0.0091 3.1E-07 55.2 1.9 23 117-139 82-104 (306)
326 1qhx_A CPT, protein (chloramph 94.8 0.018 6E-07 48.2 3.5 21 117-137 5-25 (178)
327 3fvq_A Fe(3+) IONS import ATP- 94.8 0.015 5.2E-07 54.8 3.3 23 117-139 32-54 (359)
328 1ly1_A Polynucleotide kinase; 94.8 0.016 5.3E-07 48.4 3.1 21 117-137 4-24 (181)
329 3uie_A Adenylyl-sulfate kinase 94.8 0.014 4.7E-07 50.1 2.8 23 116-138 26-48 (200)
330 3aez_A Pantothenate kinase; tr 94.8 0.013 4.6E-07 54.3 2.8 24 115-138 90-113 (312)
331 4a74_A DNA repair and recombin 94.7 0.013 4.5E-07 51.1 2.6 22 117-138 27-48 (231)
332 1uf9_A TT1252 protein; P-loop, 94.7 0.018 6.3E-07 49.1 3.5 25 114-138 7-31 (203)
333 1xjc_A MOBB protein homolog; s 94.7 0.018 6.2E-07 48.3 3.2 23 115-137 4-26 (169)
334 3ec2_A DNA replication protein 94.7 0.011 3.7E-07 49.7 1.9 22 117-138 40-61 (180)
335 2qt1_A Nicotinamide riboside k 94.7 0.021 7.2E-07 49.1 3.7 23 116-138 22-44 (207)
336 1kht_A Adenylate kinase; phosp 94.6 0.018 6.2E-07 48.5 3.2 22 116-137 4-25 (192)
337 3t15_A Ribulose bisphosphate c 94.6 0.062 2.1E-06 49.1 7.0 21 117-137 38-58 (293)
338 3tui_C Methionine import ATP-b 94.6 0.017 5.8E-07 54.6 3.2 23 117-139 56-78 (366)
339 3jvv_A Twitching mobility prot 94.6 0.015 5.2E-07 54.9 2.9 25 114-138 122-146 (356)
340 3t61_A Gluconokinase; PSI-biol 94.6 0.018 6.3E-07 49.3 3.2 22 116-137 19-40 (202)
341 2if2_A Dephospho-COA kinase; a 94.6 0.015 5.1E-07 49.9 2.6 21 117-137 3-23 (204)
342 2rhm_A Putative kinase; P-loop 94.6 0.021 7E-07 48.3 3.5 22 116-137 6-27 (193)
343 1z47_A CYSA, putative ABC-tran 94.6 0.017 6E-07 54.4 3.2 23 117-139 43-65 (355)
344 3iij_A Coilin-interacting nucl 94.6 0.021 7.3E-07 47.9 3.5 22 115-136 11-32 (180)
345 4b4t_K 26S protease regulatory 94.6 0.079 2.7E-06 51.2 7.8 22 117-138 208-229 (428)
346 4b4t_H 26S protease regulatory 94.6 0.11 3.9E-06 50.3 8.9 22 117-138 245-266 (467)
347 3vaa_A Shikimate kinase, SK; s 94.5 0.02 7E-07 49.0 3.3 22 116-137 26-47 (199)
348 1jjv_A Dephospho-COA kinase; P 94.5 0.02 6.7E-07 49.3 3.2 21 117-137 4-24 (206)
349 2yyz_A Sugar ABC transporter, 94.5 0.019 6.3E-07 54.3 3.2 23 117-139 31-53 (359)
350 1cke_A CK, MSSA, protein (cyti 94.5 0.019 6.4E-07 50.1 3.0 22 116-137 6-27 (227)
351 2cdn_A Adenylate kinase; phosp 94.5 0.025 8.6E-07 48.4 3.8 24 114-137 19-42 (201)
352 1nks_A Adenylate kinase; therm 94.5 0.02 6.9E-07 48.3 3.1 21 117-137 3-23 (194)
353 3rlf_A Maltose/maltodextrin im 94.5 0.019 6.5E-07 54.6 3.2 23 117-139 31-53 (381)
354 2ehv_A Hypothetical protein PH 94.5 0.019 6.5E-07 50.7 3.1 21 117-137 32-52 (251)
355 2it1_A 362AA long hypothetical 94.5 0.019 6.6E-07 54.3 3.2 23 117-139 31-53 (362)
356 1sq5_A Pantothenate kinase; P- 94.5 0.02 6.9E-07 52.9 3.2 23 115-137 80-102 (308)
357 2plr_A DTMP kinase, probable t 94.4 0.023 7.9E-07 48.8 3.4 23 115-137 4-26 (213)
358 1g29_1 MALK, maltose transport 94.4 0.02 6.9E-07 54.3 3.2 23 117-139 31-53 (372)
359 4b4t_I 26S protease regulatory 94.4 0.14 4.6E-06 49.3 8.9 22 117-138 218-239 (437)
360 2jeo_A Uridine-cytidine kinase 94.4 0.019 6.6E-07 51.0 2.9 22 116-137 26-47 (245)
361 2kjq_A DNAA-related protein; s 94.4 0.017 5.9E-07 47.3 2.3 22 117-138 38-59 (149)
362 1tev_A UMP-CMP kinase; ploop, 94.4 0.022 7.5E-07 48.1 3.1 21 116-136 4-24 (196)
363 1v43_A Sugar-binding transport 94.4 0.021 7.1E-07 54.2 3.2 23 117-139 39-61 (372)
364 3zvl_A Bifunctional polynucleo 94.4 0.1 3.5E-06 50.3 8.2 23 115-137 258-280 (416)
365 3h4m_A Proteasome-activating n 94.4 0.12 4.2E-06 46.5 8.3 22 116-137 52-73 (285)
366 1rz3_A Hypothetical protein rb 94.4 0.023 7.9E-07 48.8 3.2 23 115-137 22-44 (201)
367 2gza_A Type IV secretion syste 94.3 0.02 6.8E-07 54.2 3.0 22 117-138 177-198 (361)
368 3tqc_A Pantothenate kinase; bi 94.3 0.022 7.5E-07 53.0 3.1 24 114-137 91-114 (321)
369 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.019 6.4E-07 53.7 2.7 22 117-138 173-194 (330)
370 1nn5_A Similar to deoxythymidy 94.3 0.027 9.3E-07 48.5 3.6 24 114-137 8-31 (215)
371 3trf_A Shikimate kinase, SK; a 94.3 0.025 8.4E-07 47.6 3.2 21 116-136 6-26 (185)
372 2jaq_A Deoxyguanosine kinase; 94.3 0.022 7.7E-07 48.5 3.0 21 117-137 2-22 (205)
373 2c95_A Adenylate kinase 1; tra 94.3 0.028 9.4E-07 47.7 3.6 22 115-136 9-30 (196)
374 3cm0_A Adenylate kinase; ATP-b 94.3 0.023 7.8E-07 47.8 3.0 21 116-136 5-25 (186)
375 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.17 5.9E-06 46.8 9.3 22 116-137 46-67 (322)
376 2xj4_A MIPZ; replication, cell 94.3 0.032 1.1E-06 50.8 4.1 33 163-206 104-136 (286)
377 3gd7_A Fusion complex of cysti 94.2 0.024 8.3E-07 54.1 3.3 23 117-139 49-71 (390)
378 1ukz_A Uridylate kinase; trans 94.2 0.034 1.2E-06 47.5 4.0 23 114-136 14-36 (203)
379 3fb4_A Adenylate kinase; psych 94.2 0.025 8.4E-07 49.0 3.1 20 117-136 2-21 (216)
380 1odf_A YGR205W, hypothetical 3 94.2 0.024 8.3E-07 51.9 3.1 24 114-137 30-53 (290)
381 1lw7_A Transcriptional regulat 94.2 0.016 5.4E-07 54.9 1.9 23 116-138 171-193 (365)
382 4e22_A Cytidylate kinase; P-lo 94.1 0.035 1.2E-06 49.6 4.1 21 116-136 28-48 (252)
383 1gvn_B Zeta; postsegregational 94.1 0.03 1E-06 51.2 3.6 23 115-137 33-55 (287)
384 1aky_A Adenylate kinase; ATP:A 94.1 0.028 9.7E-07 48.8 3.3 23 115-137 4-26 (220)
385 2v54_A DTMP kinase, thymidylat 94.1 0.03 1E-06 47.8 3.3 23 115-137 4-26 (204)
386 2chg_A Replication factor C sm 94.1 0.12 4E-06 44.1 7.2 21 117-137 40-60 (226)
387 3dl0_A Adenylate kinase; phosp 94.1 0.027 9.3E-07 48.8 3.1 20 117-136 2-21 (216)
388 2vp4_A Deoxynucleoside kinase; 94.0 0.027 9.3E-07 49.5 3.1 25 114-138 19-43 (230)
389 2ewv_A Twitching motility prot 94.0 0.023 8E-07 54.0 2.8 24 115-138 136-159 (372)
390 3d31_A Sulfate/molybdate ABC t 94.0 0.018 6.1E-07 54.2 1.9 23 117-139 28-50 (348)
391 2yvu_A Probable adenylyl-sulfa 94.0 0.037 1.3E-06 46.7 3.8 24 114-137 12-35 (186)
392 1zd8_A GTP:AMP phosphotransfer 94.0 0.03 1E-06 49.0 3.3 22 115-136 7-28 (227)
393 2vli_A Antibiotic resistance p 94.0 0.023 8E-07 47.6 2.4 22 115-136 5-26 (183)
394 2x8a_A Nuclear valosin-contain 94.0 0.021 7E-07 51.9 2.2 21 118-138 47-67 (274)
395 1qf9_A UMP/CMP kinase, protein 94.0 0.04 1.4E-06 46.4 4.0 22 116-137 7-28 (194)
396 3kta_A Chromosome segregation 94.0 0.032 1.1E-06 46.8 3.3 22 116-137 27-48 (182)
397 3te6_A Regulatory protein SIR3 93.9 0.23 7.9E-06 45.9 9.3 24 114-137 44-67 (318)
398 2v1u_A Cell division control p 93.9 0.17 5.9E-06 47.4 8.7 22 116-137 45-66 (387)
399 3b9p_A CG5977-PA, isoform A; A 93.9 0.093 3.2E-06 47.7 6.5 22 116-137 55-76 (297)
400 1p9r_A General secretion pathw 93.8 0.027 9.1E-07 54.4 2.8 25 114-138 166-190 (418)
401 3eie_A Vacuolar protein sortin 93.8 0.12 4E-06 47.9 7.1 22 116-137 52-73 (322)
402 1jbk_A CLPB protein; beta barr 93.8 0.037 1.3E-06 46.1 3.4 23 116-138 44-66 (195)
403 1zak_A Adenylate kinase; ATP:A 93.8 0.034 1.2E-06 48.4 3.2 22 116-137 6-27 (222)
404 1oxx_K GLCV, glucose, ABC tran 93.7 0.017 6E-07 54.4 1.3 23 117-139 33-55 (353)
405 1via_A Shikimate kinase; struc 93.7 0.03 1E-06 46.7 2.6 21 117-137 6-26 (175)
406 1ixz_A ATP-dependent metallopr 93.7 0.026 8.8E-07 50.3 2.3 22 117-138 51-72 (254)
407 2oap_1 GSPE-2, type II secreti 93.7 0.03 1E-06 55.6 2.9 22 117-138 262-283 (511)
408 2iyv_A Shikimate kinase, SK; t 93.6 0.032 1.1E-06 46.9 2.7 20 117-136 4-23 (184)
409 2bwj_A Adenylate kinase 5; pho 93.6 0.04 1.4E-06 46.7 3.3 22 116-137 13-34 (199)
410 4b4t_M 26S protease regulatory 93.6 0.051 1.8E-06 52.6 4.3 22 117-138 217-238 (434)
411 3be4_A Adenylate kinase; malar 93.6 0.034 1.2E-06 48.3 2.9 22 115-136 5-26 (217)
412 3tlx_A Adenylate kinase 2; str 93.6 0.04 1.4E-06 48.9 3.3 24 114-137 28-51 (243)
413 2pez_A Bifunctional 3'-phospho 93.6 0.041 1.4E-06 46.0 3.2 22 116-137 6-27 (179)
414 2pt5_A Shikimate kinase, SK; a 93.6 0.038 1.3E-06 45.6 3.0 21 117-137 2-22 (168)
415 1e4v_A Adenylate kinase; trans 93.5 0.041 1.4E-06 47.6 3.2 21 117-137 2-22 (214)
416 2p5t_B PEZT; postsegregational 93.4 0.036 1.2E-06 49.5 2.6 23 115-137 32-54 (253)
417 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.032 1.1E-06 48.5 2.3 22 117-138 25-46 (235)
418 3umf_A Adenylate kinase; rossm 93.3 0.058 2E-06 47.1 3.9 22 116-137 30-51 (217)
419 1gtv_A TMK, thymidylate kinase 93.3 0.021 7.3E-07 49.2 1.0 21 117-137 2-22 (214)
420 2pbr_A DTMP kinase, thymidylat 93.3 0.044 1.5E-06 46.2 3.0 21 117-137 2-22 (195)
421 1vht_A Dephospho-COA kinase; s 93.3 0.047 1.6E-06 47.3 3.2 22 116-137 5-26 (218)
422 2z0h_A DTMP kinase, thymidylat 93.3 0.042 1.4E-06 46.5 2.8 21 117-137 2-22 (197)
423 2f6r_A COA synthase, bifunctio 93.2 0.059 2E-06 49.0 3.9 23 114-136 74-96 (281)
424 3ozx_A RNAse L inhibitor; ATP 93.2 0.055 1.9E-06 54.0 3.9 23 117-139 27-49 (538)
425 3ug7_A Arsenical pump-driving 93.2 4.2 0.00014 37.8 16.8 85 196-282 237-333 (349)
426 1cr0_A DNA primase/helicase; R 93.2 0.036 1.2E-06 50.6 2.4 22 117-138 37-58 (296)
427 2npi_A Protein CLP1; CLP1-PCF1 93.1 0.037 1.3E-06 54.1 2.5 24 115-138 138-161 (460)
428 1iy2_A ATP-dependent metallopr 93.1 0.036 1.2E-06 50.1 2.3 22 117-138 75-96 (278)
429 3qf7_A RAD50; ABC-ATPase, ATPa 93.1 0.18 6.1E-06 47.6 7.2 21 116-136 24-44 (365)
430 3sr0_A Adenylate kinase; phosp 93.1 0.051 1.8E-06 47.0 3.1 21 117-137 2-22 (206)
431 1uj2_A Uridine-cytidine kinase 93.1 0.053 1.8E-06 48.3 3.3 24 114-137 21-44 (252)
432 1in4_A RUVB, holliday junction 93.0 0.036 1.2E-06 51.7 2.2 22 117-138 53-74 (334)
433 1e6c_A Shikimate kinase; phosp 93.0 0.048 1.6E-06 45.1 2.8 20 117-136 4-23 (173)
434 2ze6_A Isopentenyl transferase 93.0 0.046 1.6E-06 48.9 2.8 21 117-137 3-23 (253)
435 1f2t_A RAD50 ABC-ATPase; DNA d 93.0 0.056 1.9E-06 44.1 3.1 22 115-136 23-44 (149)
436 1yqt_A RNAse L inhibitor; ATP- 93.0 0.05 1.7E-06 54.3 3.2 23 117-139 49-71 (538)
437 2obl_A ESCN; ATPase, hydrolase 93.0 0.043 1.5E-06 51.6 2.6 26 114-139 70-95 (347)
438 1ak2_A Adenylate kinase isoenz 92.9 0.061 2.1E-06 47.2 3.5 23 115-137 16-38 (233)
439 2xb4_A Adenylate kinase; ATP-b 92.8 0.055 1.9E-06 47.2 3.0 20 117-136 2-21 (223)
440 3bos_A Putative DNA replicatio 92.8 0.064 2.2E-06 46.7 3.4 23 115-137 52-74 (242)
441 1sxj_A Activator 1 95 kDa subu 92.8 0.12 4E-06 51.4 5.6 22 116-137 78-99 (516)
442 1zuh_A Shikimate kinase; alpha 92.8 0.059 2E-06 44.5 3.0 20 117-136 9-28 (168)
443 3b60_A Lipid A export ATP-bind 92.8 0.055 1.9E-06 54.6 3.3 23 117-139 371-393 (582)
444 2p65_A Hypothetical protein PF 92.8 0.047 1.6E-06 45.4 2.4 23 115-137 43-65 (187)
445 3r20_A Cytidylate kinase; stru 92.8 0.062 2.1E-06 47.5 3.2 22 115-136 9-30 (233)
446 3vfd_A Spastin; ATPase, microt 92.7 0.15 5E-06 48.6 6.0 22 116-137 149-170 (389)
447 1m7g_A Adenylylsulfate kinase; 92.7 0.068 2.3E-06 46.1 3.4 22 116-137 26-47 (211)
448 3euj_A Chromosome partition pr 92.6 0.048 1.7E-06 53.5 2.5 22 116-137 30-51 (483)
449 3nwj_A ATSK2; P loop, shikimat 92.6 0.06 2.1E-06 48.1 2.9 22 116-137 49-70 (250)
450 2cvh_A DNA repair and recombin 92.5 0.064 2.2E-06 46.2 2.9 21 117-137 22-42 (220)
451 2yl4_A ATP-binding cassette SU 92.5 0.055 1.9E-06 54.7 2.9 23 117-139 372-394 (595)
452 3j16_B RLI1P; ribosome recycli 92.5 0.064 2.2E-06 54.3 3.2 23 117-139 105-127 (608)
453 3b5x_A Lipid A export ATP-bind 92.4 0.06 2.1E-06 54.3 3.0 23 117-139 371-393 (582)
454 1n0w_A DNA repair protein RAD5 92.4 0.051 1.8E-06 47.6 2.3 23 116-138 25-47 (243)
455 3qf4_B Uncharacterized ABC tra 92.4 0.059 2E-06 54.5 3.0 23 117-139 383-405 (598)
456 3d8b_A Fidgetin-like protein 1 92.4 0.17 5.7E-06 47.6 5.9 22 116-137 118-139 (357)
457 4eaq_A DTMP kinase, thymidylat 92.4 0.088 3E-06 46.3 3.7 24 114-137 25-48 (229)
458 2w58_A DNAI, primosome compone 92.3 0.079 2.7E-06 45.2 3.3 22 116-137 55-76 (202)
459 3zq6_A Putative arsenical pump 92.3 4.9 0.00017 36.9 15.8 81 197-279 223-315 (324)
460 2dpy_A FLII, flagellum-specifi 92.3 0.059 2E-06 52.4 2.6 25 114-138 156-180 (438)
461 2grj_A Dephospho-COA kinase; T 92.3 0.08 2.8E-06 45.2 3.2 24 114-137 11-34 (192)
462 1q3t_A Cytidylate kinase; nucl 92.2 0.086 3E-06 46.3 3.5 24 114-137 15-38 (236)
463 1lv7_A FTSH; alpha/beta domain 92.2 0.077 2.6E-06 47.2 3.2 21 117-137 47-67 (257)
464 2qmh_A HPR kinase/phosphorylas 92.2 0.11 3.6E-06 44.7 3.8 24 116-139 35-58 (205)
465 3bk7_A ABC transporter ATP-bin 92.2 0.071 2.4E-06 54.0 3.2 23 117-139 119-141 (607)
466 3ozx_A RNAse L inhibitor; ATP 92.2 0.074 2.5E-06 53.1 3.2 23 117-139 296-318 (538)
467 4a82_A Cystic fibrosis transme 92.1 0.052 1.8E-06 54.8 2.1 23 117-139 369-391 (578)
468 1svm_A Large T antigen; AAA+ f 92.1 0.073 2.5E-06 50.6 2.9 21 117-137 171-191 (377)
469 2zan_A Vacuolar protein sortin 92.0 0.26 9E-06 47.8 7.0 22 116-137 168-189 (444)
470 3u61_B DNA polymerase accessor 92.0 0.46 1.6E-05 43.6 8.4 98 117-239 50-149 (324)
471 3hu3_A Transitional endoplasmi 92.0 0.17 5.7E-06 49.9 5.5 21 117-137 240-260 (489)
472 3cf2_A TER ATPase, transitiona 92.0 0.25 8.7E-06 51.5 7.1 22 117-138 240-261 (806)
473 3qf4_A ABC transporter, ATP-bi 92.0 0.064 2.2E-06 54.2 2.5 23 117-139 371-393 (587)
474 1yqt_A RNAse L inhibitor; ATP- 91.8 0.083 2.8E-06 52.7 3.2 23 117-139 314-336 (538)
475 2b8t_A Thymidine kinase; deoxy 91.7 0.21 7.1E-06 43.7 5.3 23 114-136 11-33 (223)
476 3tqf_A HPR(Ser) kinase; transf 91.7 0.11 3.8E-06 43.5 3.2 24 117-140 18-41 (181)
477 3syl_A Protein CBBX; photosynt 91.7 0.12 4.2E-06 47.1 3.9 23 115-137 67-89 (309)
478 3ake_A Cytidylate kinase; CMP 91.6 0.11 3.6E-06 44.4 3.2 21 117-137 4-24 (208)
479 1tue_A Replication protein E1; 91.6 0.085 2.9E-06 45.6 2.5 20 117-136 60-79 (212)
480 3bk7_A ABC transporter ATP-bin 91.5 0.095 3.2E-06 53.1 3.2 23 117-139 384-406 (607)
481 3n70_A Transport activator; si 91.5 0.1 3.4E-06 42.1 2.8 21 117-137 26-46 (145)
482 1nlf_A Regulatory protein REPA 91.4 0.081 2.8E-06 47.8 2.4 22 116-137 31-52 (279)
483 3exa_A TRNA delta(2)-isopenten 91.4 0.11 3.8E-06 47.9 3.2 23 115-137 3-25 (322)
484 1a7j_A Phosphoribulokinase; tr 91.2 0.08 2.7E-06 48.4 2.2 24 114-137 4-27 (290)
485 1njg_A DNA polymerase III subu 91.2 0.12 4.1E-06 44.6 3.2 21 117-137 47-67 (250)
486 1ltq_A Polynucleotide kinase; 91.2 0.11 3.7E-06 47.4 3.0 21 117-137 4-24 (301)
487 4fcw_A Chaperone protein CLPB; 91.1 0.15 5E-06 46.6 3.9 22 116-137 48-69 (311)
488 2ce7_A Cell division protein F 91.1 0.46 1.6E-05 46.5 7.5 22 117-138 51-72 (476)
489 3j16_B RLI1P; ribosome recycli 91.1 0.11 3.8E-06 52.6 3.2 24 117-140 380-403 (608)
490 1zcb_A G alpha I/13; GTP-bindi 91.0 0.13 4.4E-06 48.6 3.4 22 114-135 32-53 (362)
491 3qks_A DNA double-strand break 91.0 0.13 4.3E-06 44.3 3.1 21 116-136 24-44 (203)
492 1sxj_E Activator 1 40 kDa subu 90.8 0.087 3E-06 49.1 2.1 21 117-137 38-58 (354)
493 1qvr_A CLPB protein; coiled co 90.7 0.42 1.4E-05 50.4 7.4 23 116-138 192-214 (854)
494 2dr3_A UPF0273 protein PH0284; 90.7 0.13 4.4E-06 45.1 2.9 21 117-137 25-45 (247)
495 3co5_A Putative two-component 90.7 0.11 3.6E-06 41.9 2.2 22 117-138 29-50 (143)
496 1fnn_A CDC6P, cell division co 90.6 0.14 4.6E-06 48.3 3.1 21 117-137 46-66 (389)
497 1ko7_A HPR kinase/phosphatase; 90.4 0.16 5.3E-06 46.9 3.3 29 117-145 146-174 (314)
498 3cf0_A Transitional endoplasmi 90.4 0.16 5.5E-06 46.4 3.4 21 117-137 51-71 (301)
499 3a8t_A Adenylate isopentenyltr 90.4 0.18 6E-06 47.0 3.7 23 116-138 41-63 (339)
500 2qby_A CDC6 homolog 1, cell di 90.4 0.15 5.1E-06 47.8 3.3 23 116-138 46-68 (386)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=1e-48 Score=369.68 Aligned_cols=276 Identities=37% Similarity=0.569 Sum_probs=242.4
Q ss_pred CCCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchh-hhhhhHHHHH
Q 016529 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMK 187 (388)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~-~~~~~~~~~~ 187 (388)
+++...+.|+++|.+|||||||+|+|++.++.+++..+++|+.......... +.++.||||||+.... ...+...+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3455677999999999999999999999999888999999999988888887 8999999999985422 1456667777
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHH-HHhcccCCCCCCEEEEEeCCCCC-ChhhHhHHHHHhhhcC-CCceEEEec
Q 016529 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVS 264 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l-~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~-~~~~v~~vS 264 (388)
.+..++..+|++++|+|++++.......+ ...+.. .+.|+++|+||+|+. +..........+.... .+.+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 88888999999999999998765555554 666665 579999999999998 5555555555555544 467899999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecC--CceEEEEE
Q 016529 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP--TAKDFIQV 342 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~--~~~~~i~~ 342 (388)
|++|.|+++|+++|.+.++++++.||.+..++++.+++++|++||+++..+.+++||++.+.+..|+.++ ++..+|.+
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a 242 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKG 242 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886 36789999
Q ss_pred EEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEec
Q 016529 343 EIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVP 387 (388)
Q Consensus 343 ~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~ 387 (388)
.++|+|++|+.|+||++|++||+|+..||++||++||++|||+||
T Consensus 243 ~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~ 287 (308)
T 3iev_A 243 EIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELW 287 (308)
T ss_dssp EEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred EEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence 999999999999999999999999999999999999999999997
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=2.9e-48 Score=364.83 Aligned_cols=271 Identities=36% Similarity=0.535 Sum_probs=239.4
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.++++|+|+|.+|||||||+|+|++.++.+++..+++|++.+...+...+.++.||||||+.. ....+...+...+..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHH
Confidence 477899999999999999999999999887888899999888888888889999999999854 3345666677778888
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016529 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
++.+|++++|+|++++....+.++.+.+.....+.|+++|+||+|+..... +......+ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCH
Confidence 999999999999998887777777766665223799999999999986554 33333333 45568999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcc-CCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCC
Q 016529 272 EDIRDWILTKLPLGPAYYPKDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (388)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~ 350 (388)
++|+++|.+.++++++.|+.+.. ++.+.++.++|++|++++..+..++||++.+.+..++.++++..+|.+.++|||++
T Consensus 161 ~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~ 240 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPS 240 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHH
T ss_pred HHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCC
Confidence 99999999999999999999888 99999999999999999999999999999999999998766789999999999999
Q ss_pred eeeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEec
Q 016529 351 QKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVP 387 (388)
Q Consensus 351 q~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~ 387 (388)
|+.++||++|.+||+|+.+||++||++||++|||+||
T Consensus 241 ~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~ 277 (301)
T 1wf3_A 241 QKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLE 277 (301)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEEEE
Confidence 9999999999999999999999999999999999997
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=2.8e-45 Score=344.93 Aligned_cols=273 Identities=31% Similarity=0.546 Sum_probs=237.6
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+.++|+|+|++|||||||+|+|++.++.+++..+++|++...+.+...+.++.+|||||+.......+...+...+..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 46679999999999999999999999988788889999888888888888999999999974123344444555566778
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC-hhhHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016529 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
+..+|++++|+|+++ ......++.+.+.. .+.|+++|+||+|+.. ..........+....++..++++||++|.|+
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 899999999999987 77777777776665 6799999999999987 4444444555544445557999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCe
Q 016529 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ 351 (388)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q 351 (388)
++|+++|.+.++++++.|+.+..++.+.++.++|++|++++..+.+++||++.+.+..+.++..+..+|.+.++|+|++|
T Consensus 163 ~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~ 242 (301)
T 1ega_A 163 DTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQ 242 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHH
T ss_pred HHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999976656788999999999999
Q ss_pred eeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEecC
Q 016529 352 KIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVPT 388 (388)
Q Consensus 352 ~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~~ 388 (388)
+.++||++|.+||+|+.+||.+||++||+||+|+||.
T Consensus 243 k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~v 279 (301)
T 1ega_A 243 KKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWV 279 (301)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999999999999999999999999999973
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.94 E-value=2.1e-27 Score=234.55 Aligned_cols=229 Identities=24% Similarity=0.277 Sum_probs=153.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
++|+|+|.||||||||+|+|++.+.+++++.+++|++.....+.+.+..+.+|||||+.....+.+...+...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999999887789999999999888888888999999999975433233445566677788999
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCCCCCCHHHH
Q 016529 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
||++|+|+|++++....+.++..+++. .++|+++|+||+|+..... ... .+++ . .+..+++++||++|.|+++|
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~-~-lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELY-S-LGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHG-G-GSSCSCEECBTTTTBSHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHH-h-cCCCCEEEEeccCCCCHHHH
Confidence 999999999998887777777777765 5799999999999854311 112 2232 2 23446899999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCce-EEEEEEEEEe
Q 016529 275 RDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTAK-DFIQVEIVVE 347 (388)
Q Consensus 275 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~------~~~~~-~~i~~~~~~e 347 (388)
+++|.+.+++...........+.+. ++...+++++||||++|.+.+.. .++++ ..+. ..+.
T Consensus 157 ~~~i~~~l~~~~~~~~~~~~~~~~~----------kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~--~~i~ 224 (439)
T 1mky_A 157 LETIIKKLEEKGLDLESKPEITDAI----------KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVD--DEVF 224 (439)
T ss_dssp HHHHHHHHHHTTCCSSSCCCCCSCE----------EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CC--EEEE
T ss_pred HHHHHHhcccccccchhccccccCc----------eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceE--EEEE
Confidence 9999988864321100000001110 34567899999999998875432 23322 2222 3345
Q ss_pred eCCeeeEEEecCCh
Q 016529 348 KNSQKIILIGKGGK 361 (388)
Q Consensus 348 ~~~q~~~vig~~g~ 361 (388)
.+++.+.+++++|.
T Consensus 225 ~~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 225 IDGRKYVFVDTAGL 238 (439)
T ss_dssp ETTEEEEESSCSCC
T ss_pred ECCEEEEEEECCCC
Confidence 57888888899985
No 5
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=3.8e-27 Score=232.56 Aligned_cols=223 Identities=26% Similarity=0.358 Sum_probs=149.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
++|+++|.+|||||||+|+|++.....+.+.+++|++.......+.+..+.+|||||+.... ..+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 58999999999999999999999888889999999999988888888999999999974322 22445566677788999
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016529 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+|++|+|+|++++....+.++...++. .++|+++|+||+|+..... ...+++ . .+..+++++||++|.|+++|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-S-LGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-G-GSSCCCEECBTTTTBTHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-H-cCCCCeEEEeCcCCCChHHHH
Confidence 999999999999888888888887776 7899999999999875421 111122 1 133478999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCc-eEEEEEEEEEee
Q 016529 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTA-KDFIQVEIVVEK 348 (388)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~-~~~i~~~~~~e~ 348 (388)
++|.+.+++.+... ..+... ++...+++++||||++|.+.+..+ +++ ...+ ...++.
T Consensus 157 ~~i~~~l~~~~~~~----~~~~~~----------ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~--~~~~~~ 220 (436)
T 2hjg_A 157 DAVAEHFKNIPETK----YNEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--DTSFTY 220 (436)
T ss_dssp HHHHHTGGGCCSSC----CCTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEEC---------C--CEEEEE
T ss_pred HHHHHhcCcccccc----ccccCc----------EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee--EEEEEE
Confidence 99999887532110 011111 345678999999999887654322 232 2222 234466
Q ss_pred CCeeeEEEecCCh
Q 016529 349 NSQKIILIGKGGK 361 (388)
Q Consensus 349 ~~q~~~vig~~g~ 361 (388)
+++.+.++|++|.
T Consensus 221 ~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 221 NQQEFVIVDTAGM 233 (436)
T ss_dssp TTEEEEETTHHHH
T ss_pred CCeEEEEEECCCc
Confidence 7888999999995
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.2e-24 Score=184.15 Aligned_cols=160 Identities=25% Similarity=0.343 Sum_probs=115.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
++|+++|.+|+|||||+|+|.+..+......++++.+.....+...+..+.+|||||.... ..+...+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG--DKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc--cchHHHHHHHHHHHHHh
Confidence 4899999999999999999998876656677777777776667777789999999996432 12333344556667889
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016529 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+|++++|+|++++......++...+.. .+.|+++|+||+|+.+... .. ..+.. .+..+++++||++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--~~-~~~~~-~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL--YL-GPLYG-LGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG--GC-GGGGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH--hH-HHHHh-CCCCCeEEEecccCCChHHHH
Confidence 999999999998877776777776665 6799999999999976422 11 11222 233478999999999999999
Q ss_pred HHHHHhCC
Q 016529 276 DWILTKLP 283 (388)
Q Consensus 276 ~~i~~~l~ 283 (388)
++|.+.++
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99998764
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=5.4e-24 Score=190.56 Aligned_cols=170 Identities=22% Similarity=0.211 Sum_probs=124.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCcchhhh-hhhHHH---HH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIH-MLDSMM---MK 187 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~-~~~~~~---~~ 187 (388)
..++|+++|.+|||||||+|+|++.+ ...++..+++|.......+. ..+..+.+|||||+...... .....+ ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 55699999999999999999999987 45667888888876655555 66789999999997432110 111111 22
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH----HHhhhc-----CCCc
Q 016529 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF-----TDVD 258 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~~-----~~~~ 258 (388)
.+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+.......... ..+... ....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKL 185 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCC
Confidence 22223445899999999998877777777777766 679999999999998765543322 233332 3456
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016529 259 EVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
+++++||++|.|+++++++|.+.++..
T Consensus 186 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 186 TVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred eEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 899999999999999999999988754
No 8
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=7e-26 Score=224.75 Aligned_cols=227 Identities=25% Similarity=0.334 Sum_probs=149.4
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+.++.++|+|+|.+|||||||+|+|++.++..+...+++|++.......+.+..+.+|||||+. .....+...+...+.
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~-~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID-IGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCC-CcchHHHHHHHHHHH
Confidence 3445679999999999999999999999988888999999999999888889999999999975 222334555667777
Q ss_pred hhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016529 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.++..+|++|+|+|+..+....+.++...++. .++|+++|+||+|+..... ...+.+.. +...++++||++|.|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~--~~~e~~~l--g~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYSL--GFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGGG--SSSSEEECCTTTCTT
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh--hHHHHHHc--CCCceEEeecccccc
Confidence 88999999999999999888888899888877 7899999999999874321 11122221 334678999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCc-eEEEEEE
Q 016529 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTA-KDFIQVE 343 (388)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~------~~~~-~~~i~~~ 343 (388)
+.+|++++.+.++....... ..... ++...+.+++|||+++|.+.+.. .+++ ...+ .
T Consensus 172 v~~L~~~i~~~l~~~~~~~~----~~~~~----------ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~--~ 235 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKY----NEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--D 235 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCC----CTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEECC------CTT--S
T ss_pred hHHHHHHHHhhccccccccc----ccccc----------eeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEE--E
Confidence 99999999988754321111 01111 34456788999998887655322 1221 1111 1
Q ss_pred EEEeeCCeeeEEEecCC
Q 016529 344 IVVEKNSQKIILIGKGG 360 (388)
Q Consensus 344 ~~~e~~~q~~~vig~~g 360 (388)
..++..++.+.++|++|
T Consensus 236 ~~~~~~~~~~~l~DT~G 252 (456)
T 4dcu_A 236 TSFTYNQQEFVIVDTAG 252 (456)
T ss_dssp EEEEETTEEEEETTGGG
T ss_pred EEEEECCceEEEEECCC
Confidence 23456788999999999
No 9
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=8.2e-25 Score=216.81 Aligned_cols=208 Identities=25% Similarity=0.261 Sum_probs=117.6
Q ss_pred ccccccccccCc-CCCcCCccccccccCCCCcCC-CCCcchhhhhcccCCCCCCCccEEEEEeCCCCChhHHHHHHhCCc
Q 016529 62 SNQREMDLDDGD-EMEFDDASSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 62 ~~~~e~~~~~~e-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.+.+|+.+||+| |.+..++..+......+.... ............ ....+|+|+|.+|||||||+|+|++.+
T Consensus 184 ~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 184 CALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV------SEGVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp HHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCEEEEEECCTTSSHHHHHHHCC---
T ss_pred HHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh------cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999976 444445555444332222111 011111111111 023489999999999999999999998
Q ss_pred eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCch----HHHH
Q 016529 140 LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEI 215 (388)
Q Consensus 140 ~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~----~~~~ 215 (388)
...++..+++|++.....+..++..+.+|||||+.. ....+...+...+..++..+|++++|+|++++... ....
T Consensus 258 ~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~ 336 (476)
T 3gee_A 258 RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRE 336 (476)
T ss_dssp ---------------CEEEEETTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHH
T ss_pred CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHH
Confidence 777899999999998888888889999999999743 22333344455667788999999999999987643 2333
Q ss_pred HHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 216 l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+...+ .+.|+++|+||+|+........ +.+... +..+++++||++|.|+++|+++|.+.+.
T Consensus 337 ~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 337 LKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 33333 3689999999999987654422 222221 1257999999999999999999999886
No 10
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=7e-23 Score=184.41 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+.++|+|+|.+|||||||+|+|++..+. +...+++|...........+..+.+|||||+...............+..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 46679999999999999999999999876 56677778777777767677899999999974321111111111223344
Q ss_pred hccccEEEEEEeCCCCCc---hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH----HHHHh-hhcCCCceEEEec
Q 016529 193 GINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWY-EKFTDVDEVIPVS 264 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~---~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~-~~~~~~~~v~~vS 264 (388)
+..+|++|+|+|+++... .....+...+.....+.|+++|+||+|+.....+.. ....+ .......+++++|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 678899999999987642 112223333333224799999999999976543321 22222 2222235899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 016529 265 AKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (388)
|++|.||++++++|.+.+.
T Consensus 186 A~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLK 204 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 9999999999999998774
No 11
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=1.3e-24 Score=214.62 Aligned_cols=210 Identities=25% Similarity=0.295 Sum_probs=137.6
Q ss_pred ccccccccccCcCCCcCCccccccccCCCCcC-CCCCcchhhhhcccCCCCCCCccEEEEEeCCCCChhHHHHHHhCCce
Q 016529 62 SNQREMDLDDGDEMEFDDASSFLSLSEKPDRN-MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 62 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
...+|+.+||+|+.++.+...+.......... ............. ....+|+++|++|||||||+|+|++.++
T Consensus 176 ~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 176 LAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELL------RTGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH------HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred HHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 45678889998866665555544322222110 0011111111111 0234899999999999999999999888
Q ss_pred eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhc
Q 016529 141 SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV 220 (388)
Q Consensus 141 ~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~ 220 (388)
.+++..+++|++.....+..++..+.+|||||+.. ..+.+.....+....++..+|++++|+|++++.......+...+
T Consensus 250 a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l 328 (462)
T 3geh_A 250 AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV 328 (462)
T ss_dssp SCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred ccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc
Confidence 77888999998877666777889999999999743 22334444455666778999999999999988776666666655
Q ss_pred ccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 016529 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 221 ~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
. ..|+++|+||+|+....... .........+++++||++|.|+++|+++|.+.+....
T Consensus 329 ~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 329 K----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp T----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred c----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3 37999999999998765433 1222223458999999999999999999999887654
No 12
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.90 E-value=6.3e-24 Score=189.69 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=109.3
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEE--eEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhH
Q 016529 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (388)
+.+..||+|+|.+|||||||+++|+...+.. ...|....+ ............+.||||+| ++.+..+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~------ 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP------ 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH------
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCC-CcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH------
Confidence 3466799999999999999999999877642 222222222 22233445557889999999 455555533
Q ss_pred HhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecC
Q 016529 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA 265 (388)
.+++.+|++++|+|.++.. .....|+.........+.|++||+||+|+.+.+.+. +...+.... + .++++|||
T Consensus 81 -~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~-~~~~e~SA 157 (216)
T 4dkx_A 81 -SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-N-VMFIETSA 157 (216)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEEBT
T ss_pred -HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHh-C-CeeEEEeC
Confidence 4488999999999998743 555666665544444679999999999997643322 222222222 3 47999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016529 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
++|.||+++|+.|++.+..
T Consensus 158 ktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTBSHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=7.6e-23 Score=179.00 Aligned_cols=166 Identities=23% Similarity=0.271 Sum_probs=109.2
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhh-hhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~ 190 (388)
.+.++|+++|.+|||||||+|+|++.. ...+...+++|........ +.++.+|||||+....... ....+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 356799999999999999999999987 3445566676665544333 2379999999974321110 1112222233
Q ss_pred hhhcc---ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEec
Q 016529 191 SAGIN---ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (388)
Q Consensus 191 ~~~~~---ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vS 264 (388)
.++.. +|++++|+|++++.......+...+.. .+.|+++|+||+|+............+.. .....+++++|
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 33444 499999999998776666656666655 67999999999999876655433322222 12346899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 016529 265 AKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (388)
|++|.|+++++++|.+.++
T Consensus 176 a~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhc
Confidence 9999999999999988764
No 14
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=9.7e-23 Score=177.40 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=111.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|+|.+.++....++.+.+. ..+..++..+.+|||||. ..+..+ +..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQ--ESLRSS-------WNTYY 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 56799999999999999999999877654444433322 223345789999999995 333322 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 8999999999998763 44555665555431 257999999999999764333333333221 11234899999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCC
Q 016529 268 GHGVEDIRDWILTKLPLGPAYYP 290 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~ 290 (388)
|.|+++++++|.+.+...++..|
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp TBTHHHHHHHHHHHHCC------
T ss_pred CcCHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999877655444
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=6.9e-23 Score=178.86 Aligned_cols=167 Identities=28% Similarity=0.360 Sum_probs=117.6
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhh-hHH---HHHh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML-DSM---MMKN 188 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~---~~~~ 188 (388)
...++|+++|.+|||||||+|+|++.........+++|........ +.++.+|||||+........ ... +...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3556999999999999999999999987666777777766544333 35789999999643211110 111 1222
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHh---hhcCCCceEEEecC
Q 016529 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY---EKFTDVDEVIPVSA 265 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~v~~vSA 265 (388)
.......+|++++|+|++++.......+...+.. .+.|+++|+||+|+.+........+.. ....+..+++++||
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 2223345699999999988776666666666655 579999999999998765443333222 22223458999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016529 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
++|.|+++++++|.+.+++
T Consensus 176 ~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999987753
No 16
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=2.1e-23 Score=179.59 Aligned_cols=162 Identities=26% Similarity=0.342 Sum_probs=115.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
..+|+++|.+|||||||+|+|.+.....++..+++|.+.....+..++..+.+|||||+... ...+..........+++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-SSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-hhHHHHHHHHHHHHHHH
Confidence 34899999999999999999999876666778888887777777777788999999997432 12222222233445678
Q ss_pred cccEEEEEEeCCCCCchHH-HHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016529 195 NADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~-~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
.+|++++|+|+++...... .++.........+.|+++|+||+|+..... . +... ...+++++||++|.|+++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~-~~~~-~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----G-MSEV-NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----E-EEEE-TTEEEEECCTTTCTTHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----h-hhhc-cCCceEEEeCCCCCCHHH
Confidence 9999999999987653222 233222222224799999999999853211 0 1111 235899999999999999
Q ss_pred HHHHHHHhCCC
Q 016529 274 IRDWILTKLPL 284 (388)
Q Consensus 274 L~~~i~~~l~~ 284 (388)
++++|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999998754
No 17
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.90 E-value=3e-24 Score=201.16 Aligned_cols=205 Identities=19% Similarity=0.247 Sum_probs=139.5
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCcee-----eecCCCC----------------------ceEEe------------
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------ 153 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~-----~~~~~~~----------------------~t~~~------------ 153 (388)
...++|+|+|.+|||||||+|+|++.++. .++..|+ +|.+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998874 2333343 22110
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCcchh----hhhhhHHHHHhHHhhhccccEEE-EEEeCCCCCchHHH-H
Q 016529 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (388)
Q Consensus 154 ------------~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~ad~ii-~VvD~~~~~~~~~~-~ 215 (388)
...........+.||||||+.... .......+...+..++..++.++ +|+|++++...... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 001111224689999999985421 12222344455666777887665 79999876654442 3
Q ss_pred HHHhcccCCCCCCEEEEEeCCCCCChhh-HhHHHHH-hhhc-CCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCC
Q 016529 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (388)
Q Consensus 216 l~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~-~~~~-~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~ 292 (388)
+...+.. .+.|+++|+||+|+.+... ....... .... .+..+++++||++|.|+++++++|.+ +.++.|+.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~~~~ 258 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHP 258 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHHHCT
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHhcCC
Confidence 5555554 6789999999999986543 2222111 0011 12357899999999999999999987 445666667
Q ss_pred ccCCcchH---HHHHHHHHHHHHhhcCCCCCce
Q 016529 293 IVSEHPER---FFVGEIIREKIFMQYRNEVPYA 322 (388)
Q Consensus 293 ~~~~~~~~---~~~~eiire~i~~~~~~~vp~s 322 (388)
..++.+.+ ..+.+++|++++..+.+++||.
T Consensus 259 ~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~ 291 (299)
T 2aka_B 259 SYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 291 (299)
T ss_dssp TTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77777766 8899999999999998888875
No 18
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=8.7e-23 Score=179.79 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=106.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||+++|.+.++....++.+.+ ...+..++..+.+|||||. ..+.. .+..++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~ 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGH--IQARR-------VWKNYL 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC------CC-------GGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCc--HhhHH-------HHHHHH
Confidence 5669999999999999999999998765433333333 2344455689999999995 33322 244568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhc---------------C
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---------------T 255 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---------------~ 255 (388)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+... .
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccC
Confidence 8999999999998753 34455555554321 2579999999999997532233333333211 1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 256 ~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
...++++|||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345899999999999999999998765
No 19
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=6.1e-23 Score=179.64 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=112.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee-eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+. ......+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhh-------hHHh
Confidence 4569999999999999999999987753 23445555554444445556678999999994 333333 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.+... ..+....... .+ .+++++||++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~ 170 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-IG-AIVVETSAKNA 170 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-TT-CEEEECBTTTT
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998754 2233333333322225789999999999974322 2223333333 23 58999999999
Q ss_pred CCHHHHHHHHHHhCCCCC
Q 016529 269 HGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~ 286 (388)
.|+++++++|.+.+...+
T Consensus 171 ~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 171 INIEELFQGISRQIPPLD 188 (192)
T ss_dssp BSHHHHHHHHHHTCC---
T ss_pred cCHHHHHHHHHHHHHhhC
Confidence 999999999999987654
No 20
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=177.12 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=102.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|+|.+..+......++++.......+......+.+|||||.....+..+ ...++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhc
Confidence 34689999999999999999999988766566666665444434444456889999999633112221 23457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+.+|++++|+|+++.. .....++..+... ...+.|+++|+||+|+.+...+ .+...+.... + .+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~g 153 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF-D-CKFIETSATLQ 153 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-T-SEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc-C-CeEEEEecCCC
Confidence 7899999999998643 2333343333322 1247999999999999764332 1222222222 2 48999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016529 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+++++++|.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 154 HNVAELFEGVVRQL 167 (175)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 21
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.89 E-value=1.9e-22 Score=174.67 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=111.1
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+..+..+|+++|.+|||||||+|+|.+.++.....+.+.+.. .+..++..+.+|||||. ..+.. .+.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~--~~~~~-------~~~ 83 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQ--ESLRS-------SWN 83 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSS--GGGTC-------GGG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCC--HhHHH-------HHH
Confidence 344667999999999999999999999887555555554432 23335689999999995 33322 244
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEec
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vS 264 (388)
.++..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++|
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 5688999999999998763 44455565555431 267999999999999764333333333211 11234899999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 016529 265 AKYGHGVEDIRDWILTK 281 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~ 281 (388)
|++|.|+++++++|.+.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999999865
No 22
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.89 E-value=4.8e-22 Score=172.40 Aligned_cols=158 Identities=23% Similarity=0.331 Sum_probs=111.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||+++|.+..+....++.+.+. ..+...+..+.+|||||. ..+. ..+..++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~~ 81 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQ--RKIR-------PYWRSYF 81 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSC--GGGH-------HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 55799999999999999999999987655455555332 223345789999999995 3322 2244567
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCC
Confidence 8999999999998753 33445555554432 257899999999999865433333333221 11234799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 162 g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988753
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.89 E-value=6.3e-23 Score=174.80 Aligned_cols=160 Identities=20% Similarity=0.191 Sum_probs=110.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+...+..+.+|||||. ..+..+ +..+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHh
Confidence 4568999999999999999999987654322 23333333333334445678999999995 333332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+..+|++++|+|++++. .....++.........+.|+++|+||+|+...... .+...+... . ..+++++||++|
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~~g 153 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-N-SLLFMETSAKTS 153 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-T-TCEEEECCTTTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-c-CCeEEEEeCCCC
Confidence 78999999999998753 33444444444333367899999999999653222 222233322 2 248999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 016529 269 HGVEDIRDWILTKLPL 284 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (388)
.|+++++++|.+.+++
T Consensus 154 ~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 154 MNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998764
No 24
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=4.6e-23 Score=188.91 Aligned_cols=166 Identities=23% Similarity=0.296 Sum_probs=119.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh----hhhHHHHHhHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRS 191 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~~~~~~~~ 191 (388)
++|+++|.+|||||||+|+|+|.+.. +...|++|.+.....+...+..+.+|||||+...... ...+.+ +..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQI---AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHH---HHH
Confidence 48999999999999999999998754 6788999998888888888889999999997543221 333322 223
Q ss_pred hh--ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 192 ~~--~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++ ..+|++|+|+|+++. .....+...+.. .+.|+++|+||+|+............+....+ ++++++||++|.
T Consensus 78 ~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~ 152 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNI 152 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTB
T ss_pred HHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCC
Confidence 34 789999999999873 222334444444 57999999999998654322211222222223 489999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCC
Q 016529 270 GVEDIRDWILTKLPLGPAYYPK 291 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~ 291 (388)
|+++++++|.+. ......|+.
T Consensus 153 gi~el~~~i~~~-~~~~~~y~~ 173 (256)
T 3iby_A 153 GIPALQQSLLHC-SQKIKPLKL 173 (256)
T ss_dssp SHHHHHHHHHTC-CSCCCCCCC
T ss_pred CHHHHHHHHHhh-hcCcccCCH
Confidence 999999999988 433323443
No 25
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=5.7e-23 Score=174.83 Aligned_cols=156 Identities=24% Similarity=0.260 Sum_probs=95.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.+|+++|.+|||||||+|+|.+.........++++... ...+......+.+|||||. ..+.. ....++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~--~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQ--DGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEETTEEEEEEEEECC------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEECCEEEEEEEEECCCC--ccchh-------hhhhhhhh
Confidence 48999999999999999999988876666666766643 2344555678999999995 33322 23345789
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCCH
Q 016529 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
+|++++|+|++++. .....++....... ..+.|+++|+||+|+.+...+. .....+....+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNV 151 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCH
Confidence 99999999998653 33444444443321 2579999999999997543322 11222222223 58999999999999
Q ss_pred HHHHHHHHHhC
Q 016529 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
++++++|.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (166)
T 3q72_A 152 QALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 26
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.89 E-value=1.6e-22 Score=177.38 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=110.3
Q ss_pred CCCCCccEEEEEeCCCCChhHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHH
Q 016529 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (388)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (388)
.+....++|+|+|.+|||||||+++|++..+..+ ..+.+ .....+...+..+.+|||||. ..+..
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~--~~~~~------- 78 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGA--KKFRG------- 78 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCS--GGGGG-------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCC--HhHHH-------
Confidence 3445667999999999999999999999887643 22222 223334577889999999995 33332
Q ss_pred hHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCC--------CCCCEEEEEeCCCCCChhhHhHHHHHhhh----
Q 016529 188 NVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYEK---- 253 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~--------~~~piilV~NK~Dl~~~~~~~~~~~~~~~---- 253 (388)
.+..++..+|++|+|+|++++. .....++..++.... .+.|+++|+||+|+.......++...+..
T Consensus 79 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 2445688999999999999764 344555555544311 27899999999999876333332222210
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 254 ~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.....+++++||++|.||++++++|.+.+.
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 123458999999999999999999998764
No 27
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=2.9e-22 Score=175.24 Aligned_cols=156 Identities=20% Similarity=0.181 Sum_probs=109.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||+++|.+..+....++.+.+ ...+..++..+.+|||||.. .+.. .+..++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHI--QARR-------LWKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSG--GGTT-------SGGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCH--HHHH-------HHHHHH
Confidence 4569999999999999999999988765433333332 34455566899999999953 3222 234567
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhc----------CCCceE
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~v 260 (388)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+... ....++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 8999999999998764 33445555554321 2679999999999997633333333333321 133579
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (388)
+++||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeECCcCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
No 28
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=8.7e-23 Score=178.37 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=112.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHH
Confidence 456999999999999999999998775421 122223333333334445578999999995 333332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++|+|+|++++. .....|+..+.... ..+.|+++|+||+|+..... ......+... .+ .+++++||++|
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-HS-MLFIEASAKTC 162 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-cC-CEEEEecCCCC
Confidence 78999999999998753 33444444443322 15789999999999954322 1222233333 22 47999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCC
Q 016529 269 HGVEDIRDWILTKLPLGPAYYPK 291 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~ 291 (388)
.|+++++++|.+.+...++.++.
T Consensus 163 ~gi~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp TTHHHHHHHHHHHHHTSGGGTCC
T ss_pred CCHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999988766554443
No 29
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=4.7e-22 Score=169.81 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=110.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|+|.+..+....++. ......+...+..+.+|||||.. .+.. .+..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~Dt~G~~--~~~~-------~~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTI----GFNVETVTYKNLKFQVWDLGGLT--SIRP-------YWRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS----SEEEEEEEETTEEEEEEEECCCG--GGGG-------GGGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcC----ccceEEEEECCEEEEEEECCCCh--hhhH-------HHHHHh
Confidence 4569999999999999999999887764222222 22233444557899999999953 3322 245568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 8999999999998763 44555565555432 157999999999999865333333322211 11234899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999987643
No 30
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=2e-22 Score=171.30 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=105.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+. .....++....... +......+.+|||||. ..+..+ +..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT--EQFTAM-------RDL 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSS--CSSTTH-------HHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHH
Confidence 4468999999999999999999987653 22333333333322 3344568999999995 333333 233
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.+.... ......... .+..+++++||+
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-WCNCAFLESSAK 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-TTSCEEEECBTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH-ccCCcEEEecCC
Confidence 467899999999998743 23333333332211 257999999999999754322 222233322 234589999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 016529 267 YGHGVEDIRDWILTKL 282 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (388)
+|.|+++++++|.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=1.8e-22 Score=174.13 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=108.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSL-------APMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------hHHH
Confidence 4569999999999999999999987754221 12222233323333444568999999995 333332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++|+|+|++++. .....++.........+.|+++|+||+|+.....+ .....+... .+ .+++++||++|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g 159 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NG-LFFMETSAKTA 159 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCSSSC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cC-CEEEEEECCCC
Confidence 78999999999998653 23334444443332357899999999999754322 222233322 22 48999999999
Q ss_pred CCHHHHHHHHHHhCCCC
Q 016529 269 HGVEDIRDWILTKLPLG 285 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~ 285 (388)
.|+++++++|.+.+...
T Consensus 160 ~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TTHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988754
No 32
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=3.2e-22 Score=169.78 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=107.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||+|+|.+..+.. ..| |.......+...+..+.+|||||. ..+. ..+..++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCC--GGGH-------HHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCC--hhhH-------HHHHHHhccC
Confidence 79999999999999999999876542 222 222233445567789999999995 3322 2244558899
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCCCC
Q 016529 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g~g 270 (388)
|++++|+|++++. .....++...+.. ...+.|+++|+||+|+............... .....+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998763 3444555555432 1257899999999999765332333332221 11234799999999999
Q ss_pred HHHHHHHHHHhCCC
Q 016529 271 VEDIRDWILTKLPL 284 (388)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (388)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 33
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=173.69 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=111.5
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+++|.+|||||||+|+|.+......... .|.......+..++..+.+|||||.. .+.. .+..+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~-------~~~~~ 87 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFKSSSLSFTVFDMSGQG--RYRN-------LWEHY 87 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEECSSCEEEEEEECCST--TTGG-------GGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEEECCEEEEEEECCCCH--HHHH-------HHHHH
Confidence 3567999999999999999999999873222222 22233344556667899999999953 3322 24456
Q ss_pred hccccEEEEEEeCCCC--CchHHHHHHHhcccCC---CCCCEEEEEeCCCCCChhhHhHHHHHhh--hc-CCCceEEEec
Q 016529 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE--KF-TDVDEVIPVS 264 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~-~~~~~v~~vS 264 (388)
+..+|++++|+|++++ ......++...+.... .+.|+++|+||+|+.......+....+. .. ....+++++|
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 8899999999999875 2444455555544322 4789999999999976433333333332 11 1235899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 016529 265 AKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (388)
|++|.|+++++++|.+.+.
T Consensus 168 a~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=1.8e-22 Score=172.16 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=109.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||+ ..+..+ +..+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL--ERFRAL-------APMY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc--hhhhcc-------cHhh
Confidence 45699999999999999999999887532 2333444444444444445578999999996 333332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+..+|++++|+|++++. .....++..+........|+++|+||+|+.+.... ......+....+ .+++++||++|.
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 78999999999998753 22333333332222367899999999999754332 122222222223 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016529 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.++
T Consensus 155 ~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 155 NINELFIEISRRIP 168 (170)
T ss_dssp SHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998875
No 35
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.88 E-value=5.5e-22 Score=173.71 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=108.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+++|.+..+....+ |.......+...+..+.+|||||. ..+..+ +..++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 94 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHYF 94 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-------CTT-------HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 56799999999999999999999887653222 222233345557789999999995 333322 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......++...... .....+++++||++
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCC
Confidence 8999999999998763 44445555554321 257999999999999765333333332221 11234799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 175 g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TBTHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999988753
No 36
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=1.8e-22 Score=185.18 Aligned_cols=163 Identities=24% Similarity=0.295 Sum_probs=116.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|+|++..+. +...+++|.......+...+..+.+|||||+.........+.+.+.... .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-K 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-h
Confidence 4568999999999999999999998875 6788899988888888888899999999997543222222222222211 1
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016529 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
..+|++++|+|+++. .....++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++
T Consensus 82 ~~~d~ii~V~D~t~~-~~~~~~~~~-l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNP-EQSLYLLLE-ILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSC-HHHHHHHHH-HHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCch-hhHHHHHHH-HHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHH
Confidence 589999999999874 333333333 333 57999999999998643322111122222223 4899999999999999
Q ss_pred HHHHHHHhCC
Q 016529 274 IRDWILTKLP 283 (388)
Q Consensus 274 L~~~i~~~l~ 283 (388)
++++|.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 37
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=6.5e-22 Score=172.47 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=110.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+ +. ......+...+..+.+|||||. ..+. ..+..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~-t~-~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIP-TV-GFNMRKITKGNVTIKLWDIGGQ--PRFR-------SMWERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC-CC-SEEEEEEEETTEEEEEEEECCS--HHHH-------TTHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCC-CC-ceeEEEEEeCCEEEEEEECCCC--HhHH-------HHHHHHH
Confidence 45699999999999999999999877641 1112 11 1112234566789999999995 3322 2344557
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
..+|++|+|+|+++.. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 8999999999998753 44445555554432 267999999999999764332333332221 12235789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 169 g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1.6e-22 Score=172.36 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=106.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+..+ +..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhh
Confidence 4589999999999999999999877542 1222233333333334444568999999995 333332 34457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh---hhH-hHHHHHhhhcCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+.+|++++|+|++++. .....++.........+.|+++|+||+|+... ..+ ......+....+ .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 8999999999998753 33334444443332367899999999999643 111 111122222122 4899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998775
No 39
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=175.18 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=109.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||+|+|++..+.. ...+..+.......+...+ ..+.+|||||. ..+..+ +..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHH
Confidence 44699999999999999999999877642 3344444444444444333 67999999994 333332 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++..+|++|+|+|++++. .....|+.........+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 163 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 578999999999998743 233444433333223578999999999997654322 11222222223 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016529 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|+++++++|.+.+.
T Consensus 164 ~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 40
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=8.9e-23 Score=174.25 Aligned_cols=160 Identities=29% Similarity=0.361 Sum_probs=104.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh-
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG- 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~- 193 (388)
..+|+++|++|||||||+|+|.+..+. ++..+++|.......+...+..+.+|||||+...........+ ...++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHH---HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHH---HHHHHh
Confidence 458999999999999999999987653 4556666666555556666789999999996432211111111 12223
Q ss_pred -ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016529 194 -INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 194 -~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
..+|++++|+|+++. .....++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++
T Consensus 79 ~~~~~~~i~v~D~~~~-~~~~~~~~~-~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL-ERNLYLTLQ-LME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHCCSEEEEEEETTCH-HHHHHHHHH-HHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHH
T ss_pred cCCCCEEEEEecCCch-hHhHHHHHH-HHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCHH
Confidence 379999999999863 223333333 333 47999999999998543221111111211112 479999999999999
Q ss_pred HHHHHHHHhCC
Q 016529 273 DIRDWILTKLP 283 (388)
Q Consensus 273 eL~~~i~~~l~ 283 (388)
+++++|.+.+.
T Consensus 154 ~l~~~l~~~~~ 164 (165)
T 2wji_A 154 ELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 41
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=174.18 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=107.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+. ....+..+.......+...+ ..+.+|||||. ..+.. .+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRT-------ITST 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSS-------CCGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhh-------hHHH
Confidence 4569999999999999999999998875 34445555554444444444 78999999994 33322 2345
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++++|+|++++. .....|+..... ...+.|+++|+||+|+....... ......... + .+++++||++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 154 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM-G-IQLFETSAKE 154 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CCEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc-C-CeEEEEECCC
Confidence 578999999999998753 223333333322 22578999999999987543221 222222222 2 4899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 155 ~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 155 NVNVEEMFNCITELVL 170 (181)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988663
No 42
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.88 E-value=6.3e-22 Score=171.87 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=111.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|++++.......++.+ .....+..++..+.+|||||. ..+ ...+..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~--~~~-------~~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQ--KSL-------RSYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCS--HHH-------HTTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCC--HhH-------HHHHHHHh
Confidence 55699999999999999999999877221122222 222334446789999999995 222 23345668
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 8999999999998754 34445555554431 257999999999999865444333333321 12335899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 164 ~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 43
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.9e-22 Score=173.87 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=106.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+......+.++.......+. .....+.+|||||. ..+. ..+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--ERFR-------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 4569999999999999999999988764333344444333333323 33458999999994 3222 23456
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ .......... + .+++++||++
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 157 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-G-LPFMETSAKT 157 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-T-CCEEECCTTT
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc-C-CeEEEEeCCC
Confidence 688999999999998753 22334443333322257899999999999754321 1222222222 2 4799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987653
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.88 E-value=4.7e-22 Score=170.96 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=105.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+... ...+.+|||||. ..+. ..+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ--ERFR-------SLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCC--GGGH-------HHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc--hhhh-------hhHHH
Confidence 45699999999999999999999877542 223333333333333333 368999999995 3322 23456
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC----CCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEec
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vS 264 (388)
++..+|++++|+|++++. .....|+....... ..+.|+++|+||+|+..... .......... ....+++++|
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S 154 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-NGDYPYFETS 154 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-TTCCCEEECC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-cCCceEEEEe
Confidence 688999999999998753 22333333322211 15689999999999974322 2222233222 2345899999
Q ss_pred CCCCCCHHHHHHHHHHhCCC
Q 016529 265 AKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~ 284 (388)
|++|.|+++++++|.+.+..
T Consensus 155 a~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987643
No 45
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.88 E-value=3.5e-23 Score=185.30 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
.+..+|+++|.+|||||||+|+|+... ......+.+++.......+...+..+.+|||||. ..+..+ +..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 83 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGL-------RDG 83 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCC-------CHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHH-------HHH
Confidence 456799999999999999999966544 3334677777877777667777789999999994 344333 233
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++..+|++++|+|++++. .....|+...... ..+.|+++|+||+|+.+.........+.... ..+++++||++|.
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNY 160 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHHH--TCEEEECBGGGTB
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHHc--CCEEEEEeCCCCC
Confidence 477999999999998753 2333444443332 2579999999999997543322222222221 2489999999999
Q ss_pred CHHHHHHHHHHhCCCCCC
Q 016529 270 GVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~~ 287 (388)
|+++++++|.+.+...++
T Consensus 161 gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TTTHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 999999999998766544
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.88 E-value=3.2e-22 Score=172.36 Aligned_cols=161 Identities=18% Similarity=0.249 Sum_probs=110.0
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016529 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
++.+..+|+++|.+|||||||+|+|++..+. .....++.......+... ...+.+|||||. ..+..+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~------- 73 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAM------- 73 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCC-------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCc--hhhHHH-------
Confidence 4446679999999999999999999987653 444555544444444443 357899999995 333333
Q ss_pred HHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEec
Q 016529 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vS 264 (388)
+..++..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.....+. .....+.... ..+++++|
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 152 (181)
T 2fn4_A 74 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH-HVAYFEAS 152 (181)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEECB
T ss_pred HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCeEEEec
Confidence 223467899999999998743 33444444443221 2578999999999997543321 1222222222 24899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 016529 265 AKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (388)
|++|.|+++++++|.+.+.
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=2.6e-22 Score=172.55 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=108.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ +..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~ 82 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSL-------IPS 82 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------SHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHH-------HHH
Confidence 45699999999999999999999877642 333444434433333333 368999999995 333332 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.+.... .......... + .+++++||++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 160 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-N-VMFIETSAKA 160 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEEEBTTT
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc-C-CeEEEEeCCC
Confidence 477899999999998643 33444444433322257899999999999754322 2222222222 2 4899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.++.
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 48
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=1e-22 Score=188.59 Aligned_cols=165 Identities=27% Similarity=0.299 Sum_probs=119.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh----hhhhHHHHHhH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~ 189 (388)
+..+|+++|.+|||||||+|+|+|.+. .++..+++|.+.....+...+..+.+|||||+..... ..+.....+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 456899999999999999999999985 5788999999988888888888999999999754321 12222222221
Q ss_pred HhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
.....+|++++|+|+++. ... ..+...+.. .+.|+++|+||+|+............+....+ ++++++||++|.
T Consensus 81 -~~~~~~d~ii~VvD~~~~-~~~-~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~ 154 (274)
T 3i8s_A 81 -ILSGDADLLINVVDASNL-ERN-LYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGR 154 (274)
T ss_dssp -HHHTCCSEEEEEEEGGGH-HHH-HHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGH
T ss_pred -HhhcCCCEEEEEecCCCh-HHH-HHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 224799999999999863 222 223333333 47999999999998654322111122222223 489999999999
Q ss_pred CHHHHHHHHHHhCCCC
Q 016529 270 GVEDIRDWILTKLPLG 285 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~ 285 (388)
|+++|+++|.+.++..
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988754
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=173.99 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=102.3
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+..+|+++|.+|||||||+|+|++..+... ..+..+.+.....+ ......+.+|||||. ..+.. .+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNS-------ITS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHH-------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHH-------HHH
Confidence 3456899999999999999999999876532 22322223322233 333468999999995 33322 234
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCC
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
.++..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+. .....+.......+++++||++
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 173 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD 173 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 5578899999999998753 223333322222222579999999999997543321 1222233322345899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 016529 268 GHGVEDIRDWILTKL 282 (388)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (388)
|.|+++++++|.+.+
T Consensus 174 g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 174 NFNVDEIFLKLVDDI 188 (192)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 50
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=2.8e-22 Score=172.48 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+.++|+++|.+|||||||+++|++..+. ....++++.......+...+..+.+|||||.. .+..+ +..++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE--AFTTM-------RARGA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS--SSSCS-------CCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH--HHHHH-------HHHHH
Confidence 5679999999999999999999998764 23344444443334455567889999999953 33322 23457
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcC-------CCceEEEecCC
Q 016529 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSAK 266 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~v~~vSA~ 266 (388)
..+|++++|+|++++...........+.. .+.|+++|+||+|+..... ......+.... ...+++++||+
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 88999999999987654443333344333 5789999999999986321 12222222111 12589999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 016529 267 YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (388)
+|.|+++++++|.+.+.
T Consensus 154 ~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999987654
No 51
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.88 E-value=3.7e-22 Score=178.07 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=108.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||+|+|++..+... ....+.+............ ..+.+|||||. ..+..+. ..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~-------~~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLK-------DV 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCC-------HH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHH-------HH
Confidence 456999999999999999999998765422 2333333333332222222 67999999995 3333332 23
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+.. ....+... ...+++++||++|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g 159 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-KNYEYFEISAKTA 159 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT-CCCEEEEEBTTTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCcEEEEecCCC
Confidence 477899999999998754 2333343333322224689999999999986533322 22222222 2358999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCC
Q 016529 269 HGVEDIRDWILTKLPLGPAYY 289 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~ 289 (388)
.|+++++++|.+.+.......
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHhcccccc
Confidence 999999999999886654433
No 52
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.87 E-value=3.7e-22 Score=172.89 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=108.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|.+..+. .....++...... .+......+.+|||||. ..+.. .+..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDR-------LRPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCS--GGGTT-------TGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCC--HhHHH-------HHHH
Confidence 4569999999999999999999977653 2222333222222 23344567889999995 33322 2344
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-------------HHHHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (388)
++..+|++++|+|++++. ......|...+.....+.|+++|+||+|+........ ....+....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 578999999999998753 2232223333333224799999999999975432111 1111222233
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (388)
..+++++||++|.|+++++++|.+.+..+++
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 4589999999999999999999998876543
No 53
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.87 E-value=5.2e-22 Score=170.70 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=107.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|.+..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHH
Confidence 456999999999999999999998776421 122222333333333444568999999994 333322 3445
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++++|+|++++. .....|+.........+.|+++|+||+|+...... .+...+.... + .+++++||++|
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~ 162 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-G-LLFLEASAKTG 162 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-T-CEEEECCTTTC
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc-C-CEEEEEeCCCC
Confidence 78999999999998753 22333433333222267899999999999653322 2223333332 2 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016529 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|+++++++|.+.+.
T Consensus 163 ~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 163 ENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988664
No 54
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.87 E-value=5.4e-22 Score=172.26 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=105.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+. ...++++......... .....+.+|||||. ..+..+ +..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHH-------HHH
Confidence 4568999999999999999999987753 3344444443333333 33456888999994 333333 234
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 467899999999998743 23333333332211 257999999999999754332222222222222 47999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016529 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=174.16 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=107.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+|+|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||+. .+..+ +..+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHH
Confidence 45699999999999999999999887653222 22233333333344456789999999963 33332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+...... .....+... .+ .+++++||++|
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 172 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-NG-LLFLETSALDS 172 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998753 22334444443332357899999999999753321 222222222 23 48999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016529 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+++++++|.+.+
T Consensus 173 ~gi~~l~~~l~~~i 186 (193)
T 2oil_A 173 TNVELAFETVLKEI 186 (193)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 56
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=4e-23 Score=189.83 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=124.2
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCcchhhh--hhhHHHHHhH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNV 189 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~ 189 (388)
.+..+|+|+|++|||||||+|+|++.+.......+. +|.......+.+.+.++.+|||||+...... .....+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999988554454554 6777777777788899999999997542211 1112234455
Q ss_pred HhhhccccEEEEEEeCCCCCchHHHHHHHhcccC-C--CCCCEEEEEe-CCCCCChhhHhH---------HHHHhhhcCC
Q 016529 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLN-KKDLIKPGEIAK---------KLEWYEKFTD 256 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~-~--~~~piilV~N-K~Dl~~~~~~~~---------~~~~~~~~~~ 256 (388)
..+++.+|++|+|+|+++ ......++...+... . ...|.++|+| |+|+.... ... ..........
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCC
Confidence 567889999999999986 555554444443321 0 1467777777 99997532 222 1112222221
Q ss_pred ----CceEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCCccCCcch
Q 016529 257 ----VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKDIVSEHPE 299 (388)
Q Consensus 257 ----~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~-~~~~~~~~~~~~~ 299 (388)
+.+ +++||++|.|+++++++|.+.++..+ +.|+.+..++.+.
T Consensus 178 ~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 178 RICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp CEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred eEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 112 78999999999999999999998766 6777665555444
No 57
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=6e-22 Score=171.81 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=107.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+... ...+.+|||||. ..+. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ--ERFR-------SVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 45699999999999999999999877642 233333333333333333 368999999995 3322 23556
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++|+|+|++++. .....|+.........+.|+++|+||+|+...... .+....... .+ .+++++||++
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 156 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NE-LMFLETSALT 156 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEecCCC
Confidence 688999999999998743 22333443332222267899999999999643222 222233322 22 5899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 157 GENVEEAFVQCARKIL 172 (186)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987664
No 58
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.87 E-value=2.7e-22 Score=175.66 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=108.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+. .....++.......+. .....+.+|||||. ..+.. .+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDR-------LRPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTT-------TGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHH-------HhHh
Confidence 4569999999999999999999988753 3333343333333333 33456799999994 33332 2445
Q ss_pred hhccccEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChh---hHhHHHHHhhhcCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+++.+|++++|+|++++.. .....|...+.....+.|+++|+||+|+.... ........+....+...++++||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 6889999999999987532 22233444443333579999999999997531 111222222222234349999999
Q ss_pred CCCCHHHHHHHHHHhCCCC
Q 016529 267 YGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~ 285 (388)
+|.||++++++|.+.+...
T Consensus 171 ~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999877543
No 59
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.87 E-value=1.2e-22 Score=191.88 Aligned_cols=204 Identities=20% Similarity=0.255 Sum_probs=133.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCce-----eeecCCC---CceEEe--------------------------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRHR-------------------------------- 153 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~-----~~~~~~~---~~t~~~-------------------------------- 153 (388)
..++|+|+|.+|||||||+|+|+|.++ ..++..| .+++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 456999999999999999999999886 3333444 222210
Q ss_pred ------E-------------EEEEeCCCeeEEEEeCCCCcchh----hhhhhHHHHHhHHhhhccccEEEEEEeCC-CCC
Q 016529 154 ------I-------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDAC-KAP 209 (388)
Q Consensus 154 ------~-------------~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~ad~ii~VvD~~-~~~ 209 (388)
. ..+....+.++.||||||+.... ...+...+...+..++..+|++++|+|++ .+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 00123345689999999985411 12344556677788899999999999974 333
Q ss_pred c-hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-HhHHHHH-hhhc-CCCceEEEecCCC---CCCHHHHHHHHHHhC
Q 016529 210 E-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKY---GHGVEDIRDWILTKL 282 (388)
Q Consensus 210 ~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~-~~~~-~~~~~v~~vSA~~---g~gi~eL~~~i~~~l 282 (388)
. .....+...+.. .+.|+++|+||+|+..... ....... .... .++.+++.+||.+ +.|+.++++.+.+.+
T Consensus 183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 3 222345555555 6799999999999986543 2222211 0010 1223344445555 799999999999999
Q ss_pred CCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCce
Q 016529 283 PLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s 322 (388)
+.+++ |+ +..+..+.+++..+ +|++++..+..++||.
T Consensus 261 ~~~~~-~~-~~~~~~~~~~l~~~-lre~l~~~~~~elP~~ 297 (315)
T 1jwy_B 261 KNHPI-YK-SIANRSGTAYLSKT-LNKLLMFHIRDTLPDL 297 (315)
T ss_dssp HTCTT-GG-GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hCCCc-cc-cchhccCHHHHHHH-HHHHHHHHHHHHhHHH
Confidence 88877 44 55566667776665 9999999998888875
No 60
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=169.79 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=110.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||+|++.+.++....++.+... ..+...+..+.+|||||.. .+.. .+..++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~ 83 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQT--SIRP-------YWRCYY 83 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC------CCT-------TGGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCH--hHHH-------HHHHHh
Confidence 56799999999999999999999888754445444332 2233456899999999953 2222 244568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 8999999999998764 44455565555432 267999999999999764333333333321 11234799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 164 ~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 164 GEGITEGLDWLIDVIK 179 (183)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987653
No 61
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.87 E-value=6.4e-22 Score=171.27 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=105.9
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016529 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
+..+..+|+++|.+|||||||+|+|++..+. .....++......... .....+.+|||||. ..+..+.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~------ 83 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMR------ 83 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSH------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHH------
Confidence 3445679999999999999999999977654 2333333332233333 33345778999994 3444332
Q ss_pred HHhhhccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEe
Q 016529 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~v 263 (388)
..+++.+|++++|+|++++. .....|+...... ...+.|+++|+||+|+.+...+ .......... + .+++++
T Consensus 84 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~ 160 (183)
T 3kkq_A 84 -EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-N-IPYIET 160 (183)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-T-CCEEEE
T ss_pred -HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-C-CeEEEe
Confidence 33467899999999998753 3334444433321 1267899999999999753322 2222333332 2 579999
Q ss_pred cCC-CCCCHHHHHHHHHHhC
Q 016529 264 SAK-YGHGVEDIRDWILTKL 282 (388)
Q Consensus 264 SA~-~g~gi~eL~~~i~~~l 282 (388)
||+ +|.|+++++++|.+.+
T Consensus 161 Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 999 9999999999998765
No 62
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=176.96 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=95.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+.. ....++...... .+......+.+|||||. ..+.. .+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDR-------LRPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhH-------HHHH
Confidence 55699999999999999999999887642 222233222222 23334457999999994 33322 2334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-------------HHHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~ 256 (388)
++..+|++++|+|++++. ......|...+.....+.|+++|+||+|+......... ...+....+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 578999999999998653 22222233333332357999999999999765422111 122222234
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
..+++++||++|.|+++++++|.+.+.
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999988764
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=4.7e-22 Score=169.50 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=102.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|.+|||||||+|+|++.++.. ...+..+.......+. .....+.+|||||. ..+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHH
Confidence 3589999999999999999999877642 2233333333233333 33468999999994 333332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+..+|++++|+|++++. .....++.........+.|+++|+||+|+....... ......... + .+++++||++|.
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~ 150 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL-G-IPFIESSAKNDD 150 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH-T-CCEEECBTTTTB
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc-C-CeEEEEECCCCC
Confidence 78999999999998653 233344443333323578999999999995422211 222222222 2 479999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016529 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.+.
T Consensus 151 gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 151 NVNEIFFTLAKLIQ 164 (170)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 64
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=5.8e-22 Score=168.31 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=103.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|.+..+. .....++....... +......+.+|||||. ..+.. .+..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAA-------IRDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHH-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCc--chhHH-------HHHH
Confidence 4468999999999999999999987753 23333333333322 3333468999999995 33322 2344
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
++..+|++++|+|+++.. .....++........ .+.|+++|+||+|+.+... ..+........ + .+++++||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-N-VNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc-C-CeEEEeCCC
Confidence 577899999999998643 223333333332211 4799999999999975432 22223333322 2 489999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 016529 267 YGHGVEDIRDWILTKL 282 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (388)
+|.|+++++++|.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=2.7e-22 Score=170.20 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=103.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|++|||||||+|+|++..+.. ....++....... +......+.+|||||. ..+..+ +..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 34689999999999999999999877542 2222322222222 3333456999999995 333322 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.+.... .......... + .+++++||+
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 148 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW-G-CPFMETSAK 148 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SCEEEECTT
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh-C-CCEEEecCC
Confidence 477899999999998743 23334443333221 157999999999998654322 1222222222 2 479999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 016529 267 YGHGVEDIRDWILTKL 282 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (388)
+|.|+++++++|.+.+
T Consensus 149 ~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 149 SKTMVDELFAEIVRQM 164 (167)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998765
No 66
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=1e-21 Score=171.04 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=110.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+|+|.+..+....++.+.+ ...+...+..+.+|||||.. .+.. .+..++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~--~~~~-------~~~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQT--GVRP-------YWRCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSS--SSCC-------CCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCH--hHHH-------HHHHHh
Confidence 5569999999999999999999988765433333322 22344457899999999953 2222 234557
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....... .....+++++||++
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 8999999999998763 44455565554432 257899999999999865333333332221 11234799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 168 GDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999998764
No 67
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=2.3e-22 Score=198.38 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=118.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~ 191 (388)
...+|+++|++|||||||+|+|++..+..++..+++|++.....+..++..+.+|||||+..... ..+.....-....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45699999999999999999999998877888999999988877888888999999999643211 1112222222334
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhh---cCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~v~~vSA~ 266 (388)
+++.+|++++|+|++++....+..+...+.. .++|+++|+||+|+.+... ..+....+.. .....+++++||+
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 6788999999999999887666666666555 6899999999999976433 1222222221 2234689999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016529 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.|++++++.+.+.+..
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 68
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=4.1e-22 Score=172.20 Aligned_cols=159 Identities=25% Similarity=0.253 Sum_probs=106.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+. .....++.......+... ...+.+|||||.. .+.. .+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~-------~~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD--EYSI-------FPQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC--TTCC-------CCGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCch--hhhH-------HHHH
Confidence 5679999999999999999999976643 333334433333333333 3678999999953 3222 2334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+++.+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......... .+ .+++++||+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~ 151 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-WN-AAFLESSAK 151 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-hC-CcEEEEecC
Confidence 578999999999998643 23333433333222 157899999999999654332 222222222 23 489999999
Q ss_pred CCCCHHHHHHHHHHhCCCC
Q 016529 267 YGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~ 285 (388)
+|.|+++++++|.+.+...
T Consensus 152 ~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 152 ENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp SHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 69
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.4e-22 Score=200.87 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=122.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.+|+|+|.||||||||+|+|++.++.++++.+++|++.....+..++..+.+|||||+.....+.+.......+..++..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999998877789999999998888888888999999999985122222222222334556889
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016529 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+|++|+|+|++++.......+++.+ .++|+++|+||+|+.............. ...+++++||++|.|+++|+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~---~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLG---TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHT---CSTTEEEEEGGGTCCHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhc---CCCcEEEEECCCCCCHHHHH
Confidence 9999999999887655444444443 3689999999999975422222222221 22479999999999999999
Q ss_pred HHHHHhCC
Q 016529 276 DWILTKLP 283 (388)
Q Consensus 276 ~~i~~~l~ 283 (388)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99999765
No 70
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.87 E-value=9.3e-22 Score=169.48 Aligned_cols=153 Identities=15% Similarity=0.223 Sum_probs=101.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+++|++..+....++.+... .....+......+.+|||||... ..++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------------AKFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------------hHHH
Confidence 56799999999999999999999887753222222221 11122233346789999999532 1236
Q ss_pred ccccEEEEEEeCCCCC--chHHHH---HHHhcccCCCCCCEEEEEeCCCCCC--hhh--HhHHHHHhhhcCCCceEEEec
Q 016529 194 INADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--PGE--IAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~---l~~~~~~~~~~~piilV~NK~Dl~~--~~~--~~~~~~~~~~~~~~~~v~~vS 264 (388)
+.+|++|+|+|++++. .....| +.........+.|+++|+||+|+.. ... ..+...+.... +..+++++|
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~S 149 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYETX 149 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEEB
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEEe
Confidence 7899999999998753 233332 2222222225789999999999942 111 12222222222 235899999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 016529 265 AKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (388)
|++|.|+++++++|.+.+
T Consensus 150 a~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 150 ATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 999999999999998765
No 71
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=3.1e-22 Score=178.45 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=106.6
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+..+|+++|.+|||||||+++|++..+. .....++...... .+......+.+|||||. ..+.. .+.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDN-------VRP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTT-------TGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHH-------HHH
Confidence 35569999999999999999999988764 2323333332222 33445578999999995 33333 244
Q ss_pred hhhccccEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--------------hHhHHHHHhhhc
Q 016529 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--------------EIAKKLEWYEKF 254 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--------------~~~~~~~~~~~~ 254 (388)
.+++.+|++|+|+|+++... .....|...+.....+.|+++|+||+|+.... .......+...
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 172 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ- 172 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH-
Confidence 56889999999999987542 21223333333333679999999999996421 11122222222
Q ss_pred CCCceEEEecCCCCCC-HHHHHHHHHHhCCCC
Q 016529 255 TDVDEVIPVSAKYGHG-VEDIRDWILTKLPLG 285 (388)
Q Consensus 255 ~~~~~v~~vSA~~g~g-i~eL~~~i~~~l~~~ 285 (388)
.+..++++|||++|.| |+++|++|.+.+...
T Consensus 173 ~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 173 LGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 2334899999999998 999999999877544
No 72
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=9e-22 Score=173.77 Aligned_cols=160 Identities=22% Similarity=0.199 Sum_probs=108.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+.. .+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ--ERFQS-------LGVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSS--GGGSC-------SCCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHH-------hHHH
Confidence 45699999999999999999999887642 2233333333333333 34468999999995 33322 2345
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC----CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
+++.+|++|+|+|++++. .....|+..+.... ..+.|+++|+||+|+............+.......+++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 578999999999998753 23334433332221 146899999999999743322222222322123458999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016529 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
++|.|+++++++|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 73
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.6e-22 Score=173.06 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=106.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+. .....++.......+... ...+.+|||||.. .+.. .+..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~-------~~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDR-------LRPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS--SSTT-------TGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc--chhH-------HHHH
Confidence 4569999999999999999999987653 333344433333333333 4789999999953 3332 2345
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--------------hHHHHHhhhcC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--------------AKKLEWYEKFT 255 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--------------~~~~~~~~~~~ 255 (388)
+++.+|++++|+|++++. ......|...+.....+.|+++|+||+|+...... .+...+... .
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 164 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE-I 164 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH-H
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH-c
Confidence 688999999999998753 23332233333332257999999999999764211 112222222 2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 256 ~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
+..+++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 334799999999999999999998765
No 74
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.87 E-value=6.6e-22 Score=172.79 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=104.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSI-------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 45599999999999999999999887653222 2222222222223333468999999994 333332 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ .....+.... + .+++++||++|
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~ 168 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-G-LIFMETSAKTA 168 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc-C-CEEEEEeCCCC
Confidence 78999999999998743 33334444433322357999999999999653222 1222222222 2 48999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016529 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+++++++|.+.+
T Consensus 169 ~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 169 CNVEEAFINTAKEI 182 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.87 E-value=7.7e-22 Score=174.48 Aligned_cols=158 Identities=17% Similarity=0.126 Sum_probs=107.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC--CCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+. .....++.......+.. ....+.+|||||. ..+.. .+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 97 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDR-------LRPL 97 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTT-------TGGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHH-------HHHH
Confidence 4569999999999999999999977653 33444444444443333 3456779999995 33322 2445
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-------------HHHHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (388)
++..+|++++|+|++++. ......|...+.....+.|+++|+||+|+........ ....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 688999999999998754 2222233334333225799999999999976443211 1112223334
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
..+++++||++|.||++++++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 55799999999999999999998764
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=3e-21 Score=169.42 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=104.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-------------------------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 162 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..........+...+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45699999999999999999999887541 2222222222222233222
Q ss_pred --------eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEE
Q 016529 163 --------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLV 232 (388)
Q Consensus 163 --------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV 232 (388)
..+.+|||||. ..+..+ +..++..+|++|+|+|++++. .....|+..+... .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEE
T ss_pred cccCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEE
Confidence 78999999994 333332 334578999999999998763 3334444444433 34999999
Q ss_pred EeCCCCCChh-hHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 233 LNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 233 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
+||+|+.... ...+...+.... + .+++++||++|.|+++++++|.+.+
T Consensus 154 ~NK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQKYAQDN-N-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EECTTCC-CCSCHHHHHHHHHHT-T-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHHHHHHc-C-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999943211 123333333332 3 4899999999999999999998765
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=172.83 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=104.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+... ...+.+|||||. ..+.. .+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRT-------ITQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHH-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHH-------HHHH
Confidence 44699999999999999999999877642 122222222223333333 368999999995 33332 2445
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|+++.. .....|+..+......+.|+++|+||+|+..... ..+...+... .+..+++++||++
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~~SA~~ 176 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-YDILCAIETSAKD 176 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCSEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH-cCCCEEEEEeCCC
Confidence 588999999999998643 3344444443332236789999999999975322 1222233332 3334899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.||++++++|.+.+.
T Consensus 177 g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 177 SSNVEEAFLRVATELI 192 (201)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.9e-22 Score=167.96 Aligned_cols=158 Identities=21% Similarity=0.237 Sum_probs=101.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEE-eEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+|+++|.+|||||||+|+|++..+.. ...+..... ............+.+|||||.. .+.. .+..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~-------~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVISCDKSICTLQITDTTGSH--QFPA-------MQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEEETTEEEEEEEEECCSCS--SCHH-------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccccEEEEEEECCEEEEEEEEECCCch--hhHH-------HHHHhc
Confidence 4589999999999999999999877542 111111111 1111223344679999999953 3322 233446
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc--CCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~--~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
..+|++++|+|++++. .....++...... ...+.|+++|+||+|+.....+. ......... + .+++++||++
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~ 150 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-K-CAFMETSAKL 150 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECBTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-C-CeEEEecCCC
Confidence 7899999999998643 2223333222211 11478999999999997543321 112222222 2 4899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 151 ~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 151 NHNVKELFQELLNLEKR 167 (172)
T ss_dssp TBSHHHHHHHHHHTCCS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998764
No 79
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8e-22 Score=174.16 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=106.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+.. ...+..+.+.....+. .....+.+|||||. ..+. ..+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHH
Confidence 45699999999999999999999877642 2233333333333333 33468999999995 3322 23556
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|+++.. .....|+.........+.|+++|+||+|+.....+ .....+.... + .+++++||++
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~ 172 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ-D-MYYLETSAKE 172 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CCEEECCTTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc-C-CEEEEEeCCC
Confidence 688999999999998643 22334443333222257899999999999753322 1222222222 2 4799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 173 g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLI 188 (201)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987664
No 80
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=5.5e-22 Score=196.69 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=124.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|+|||||+|+|++.+...++..+++|.+.....+...+..+.+|||||+..... .............
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 45699999999999999999999988777889999999887777777888999999999743210 0111222223345
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhc---CCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKF---TDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~---~~~~~v~~vSA~ 266 (388)
++..+|++|+|+|++++....+.++...+.. .++|+++|+||+|+.+... ..+..+.+... ....+++++||+
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 351 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 351 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCC
Confidence 6789999999999999888888888887766 7899999999999975432 22333333322 235689999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016529 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.|+++++++|.+.+..
T Consensus 352 ~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 352 TKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 81
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=7.7e-22 Score=171.52 Aligned_cols=166 Identities=28% Similarity=0.341 Sum_probs=114.0
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+.+..+|+++|++|||||||+|+|.+..+. +...+++|.+.....+...+..+.+|||||+...........+ ...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~ 79 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARD 79 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHH---HHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHH---HHH
Confidence 346679999999999999999999997754 5667777777777777777899999999996432211111111 112
Q ss_pred hh--ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 192 ~~--~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++ ..+|++++|+|+++ ......++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 80 ~~~~~~~~~~i~v~d~~~-~~~~~~~~~~-~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATA-LERNLYLTLQ-LME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKM 154 (188)
T ss_dssp HHHHHCCSEEEEEEEGGG-HHHHHHHHHH-HHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTB
T ss_pred HHhccCCCEEEEEecchh-HHHHHHHHHH-HHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCC
Confidence 23 35899999999875 3333333333 333 57899999999998643322111122222112 479999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 016529 270 GVEDIRDWILTKLPLGP 286 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (388)
|+++++++|.+.+....
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887643
No 82
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=3.7e-22 Score=175.91 Aligned_cols=159 Identities=23% Similarity=0.266 Sum_probs=106.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+..+|+++|.+|||||||+|+|++..+. .....++....... .......+.+|||||.. .+..+ +.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 90 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD--EYSIL-------PY 90 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC--TTCCC-------CG
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc--chHHH-------HH
Confidence 45679999999999999999999988765 23333333333333 33456788999999953 33222 44
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecC
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA 265 (388)
.++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+. ........ .+ .+++++||
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa 168 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES-WG-ATFMESSA 168 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEECCT
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH-hC-CeEEEEeC
Confidence 5688999999999998643 33344444433321 1478999999999997543322 12222222 22 48999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016529 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
++|.|+++++++|.+.+..
T Consensus 169 ~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 169 RENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 83
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1e-21 Score=174.15 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=105.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+|+|.+|||||||+|+|++..+. ....+..+.......+...+ ..+.+|||||. ..+..+ +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 4569999999999999999999987764 23333333333333333333 68999999994 333322 344
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++..+|++|+|+|++++. .....|+.........+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDD 167 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 578999999999998643 23334444333322247899999999999533221112222222122 379999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016529 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.+.
T Consensus 168 gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 168 NVNEIFFTLAKLIQ 181 (213)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 84
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1.1e-21 Score=181.35 Aligned_cols=166 Identities=33% Similarity=0.359 Sum_probs=117.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||+|+|+|..+ .+...+++|.+.....+...+..+.+|||||+................ ...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhc
Confidence 346899999999999999999999887 567888999888888888888899999999975433222222221111 113
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016529 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
..+|++++|+|+++. .....++...... ...|+++|+||+|+............+....+ .+++++||++|.|+++
T Consensus 80 ~~~d~vi~v~D~~~~-~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCL-MRNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGH-HHHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcc-hhhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHHH
Confidence 689999999999874 2233333333332 23999999999998643322111222222222 4899999999999999
Q ss_pred HHHHHHHhCCCC
Q 016529 274 IRDWILTKLPLG 285 (388)
Q Consensus 274 L~~~i~~~l~~~ 285 (388)
++++|.+.+...
T Consensus 156 l~~~i~~~~~~~ 167 (271)
T 3k53_A 156 LKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999877543
No 85
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=8.9e-22 Score=171.58 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=106.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+|+++|.+|||||||+|+|++..+... ....+.+..............+.+|||||. ..+.. .+..++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ--ERYRT-------ITTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC--CSSCC-------SGGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc--HHHhh-------hHHHhc
Confidence 45999999999999999999998876422 223333333333333444578999999995 33322 244568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+...... .......... + .+++++||++|.
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL-G-FEFFEASAKENI 170 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEECBTTTTB
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc-C-CeEEEEECCCCC
Confidence 8999999999998643 23333433333222257899999999999754322 1222222222 2 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016529 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.+.
T Consensus 171 gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 171 NVKQVFERLVDVIC 184 (189)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 86
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.86 E-value=1.4e-21 Score=173.73 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=101.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+++|++..+. ...+.++.......+... +..+.+|||||+ ..+.. ..+..+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 75 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGH--ESLRF------QLLDRF 75 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCC--HHHHH------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCC--hhHHH------HHHHHH
Confidence 4569999999999999999999987754 233333333333222222 678999999995 33221 023345
Q ss_pred hccccEEEEEEeCCCCCc---hHHHHHHHhccc---CCCCCCEEEEEeCCCCCChhhHhHHHHHhh--------------
Q 016529 193 GINADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------------- 252 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~---~~~~~l~~~~~~---~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------------- 252 (388)
++.+|++|+|+|+++... ....++...+.. ...+.|+++|+||+|+............+.
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 155 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP 155 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcc
Confidence 789999999999986221 222333333221 125789999999999976433222221111
Q ss_pred ----------hcCC-------------CceEEEecCCCC------CCHHHHHHHHHHhC
Q 016529 253 ----------KFTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 282 (388)
Q Consensus 253 ----------~~~~-------------~~~v~~vSA~~g------~gi~eL~~~i~~~l 282 (388)
...+ ..++++|||++| .||++++++|.+.+
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 156 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0111 457999999999 99999999998753
No 87
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=1.4e-21 Score=169.21 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=106.5
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+..+|+++|.+|||||||+|+|++..+. .....++.......+. .....+.+|||||. ..+.. .+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAA-------IRD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHH-------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCC--cccHH-------HHH
Confidence 35569999999999999999999987753 3333444333333333 33458999999995 33332 233
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecC
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.++..+|++++|+|+++.. .....++..+..... .+.|+++|+||+|+..... ..+...+.... + .+++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-N-VNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-T-CEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc-C-CeEEEeCC
Confidence 4577899999999998643 233333333332211 4799999999999975332 22333333332 2 48999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016529 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
++|.|+++++++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987653
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.86 E-value=8.7e-22 Score=173.53 Aligned_cols=158 Identities=19% Similarity=0.186 Sum_probs=101.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.......+. .....+.+|||||. ..+..+ +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--ERFRSV-------TRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTH--HHHSCC-------CHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCc--HhHHHH-------HHH
Confidence 44699999999999999999999887653 2222222222222233 33378999999994 333322 344
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ .+...+... .+ .+++++||++
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~SA~~ 171 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NE-LMFLETSALT 171 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEECTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 578999999999998753 33334444333322257999999999999643322 222233322 22 5899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 172 g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 172 GENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987664
No 89
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=1.3e-21 Score=170.53 Aligned_cols=162 Identities=21% Similarity=0.211 Sum_probs=103.2
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
.+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+. ...+..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~------~~~~~~ 89 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFR------KSMVQH 89 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHH------TTTHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhh------hhhhHH
Confidence 35569999999999999999999987764321 12222222222223333468999999994 3322 022345
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|+++.. .....|+....... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 168 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKN 168 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEEECCSSS
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-CEEEEEeCCc
Confidence 578999999999998643 23334443333222 267999999999999654322 122222222223 4899999999
Q ss_pred C---CCHHHHHHHHHHhCC
Q 016529 268 G---HGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g---~gi~eL~~~i~~~l~ 283 (388)
| .|+++++++|.+.++
T Consensus 169 ~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGGSCHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 9 999999999988764
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=2.6e-21 Score=163.78 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=102.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|.+|||||||+|+|.+..+. .....++....... .......+.+|||||.. .+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-------~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS--SCCHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCch--hhhHH-------HHHh
Confidence 458999999999999999999987653 22233333322222 23334678999999953 33322 2334
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 67899999999998643 22233333322211 147999999999999763222222222222222 379999999999
Q ss_pred CHHHHHHHHHHhC
Q 016529 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 151 GVEDAFYTLVREI 163 (166)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 91
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=4.9e-22 Score=170.99 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=104.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+..+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ +.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hh
Confidence 55699999999999999999999877532 111222222222333333 378999999995 333332 33
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccC--CCCCC-EEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEe
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~--~~~~p-iilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~v 263 (388)
.++..+|++++|+|++++. .....|+....... ..+.| +++|+||+|+.+...+ .....+.... + .+++++
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~ 152 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-G-FSSHFV 152 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEEE
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc-C-CcEEEE
Confidence 4478999999999998753 22333333322210 02455 8999999999753221 1222222222 2 489999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCC
Q 016529 264 SAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
||++|.|+++++++|.+.+...+
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999886543
No 92
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.86 E-value=2.3e-21 Score=168.69 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016529 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
+..+..+|+++|.+|||||||++++++..+... ..+ + .......+. .....+.+|||||.. .+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~-t-~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~--------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP-E-GGRFKKEIVVDGQSYLLLIRDEGGPP--ELQ--------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT-T-CEEEEEEEEETTEEEEEEEEECSSSC--CHH---------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC-C-cceEEEEEEECCEEEEEEEEECCCCh--hhh---------
Confidence 344667999999999999999999998876422 222 2 222223333 334678889999953 221
Q ss_pred HHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCC--hhh--HhHHHHHhhhcCCCceEE
Q 016529 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIK--PGE--IAKKLEWYEKFTDVDEVI 261 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~--~~~--~~~~~~~~~~~~~~~~v~ 261 (388)
+++.+|++++|+|+++.. .....|+..+..... .+.|+++|+||+|+.. ... ......+.. ..+..+++
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~~~~~~~ 157 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-DLKRCTYY 157 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-HTTTCEEE
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-HcCCCeEE
Confidence 367899999999998754 333444444433211 4689999999999942 111 122222332 23345899
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 016529 262 PVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (388)
++||++|.||++++++|.+.+
T Consensus 158 e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 158 ETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 93
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.86 E-value=2.6e-22 Score=173.40 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=98.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||++++.+..+. ....+++....... .......+.+|||||. ..+.. .+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNR-------LRPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTT-------TGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhh-------hHHh
Confidence 5569999999999999999999987653 22233332222111 2233456779999995 33332 2345
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-----------hHHHHHhhhcCCCc
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVD 258 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~ 258 (388)
+++.+|++++|+|++++. ......|...+.....+.|+++|+||+|+.+.... ......+....+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 578999999999998653 22222233333332247999999999999754432 11112222222334
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 94
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=1.4e-21 Score=172.21 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=106.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+|+++|.+|||||||+|+|++..+... ....+.+..............+.+|||||+. .+. ..+..++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE--RYR-------TITTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch--hhc-------chHHHhh
Confidence 45899999999999999999999876422 1222333333333334445789999999953 322 2345668
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+...... .......... + .+++++||++|.
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-G-FEFFEASAKDNI 156 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH-T-CEEEECBTTTTB
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC-C-CeEEEEECCCCC
Confidence 8999999999998753 22333433333222257899999999999764322 1222222222 2 389999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016529 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.+.
T Consensus 157 gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 157 NVKQTFERLVDVIC 170 (203)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 95
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=3.9e-21 Score=189.67 Aligned_cols=169 Identities=25% Similarity=0.299 Sum_probs=118.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh---hhhHHHHHhHH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNVR 190 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~ 190 (388)
...+|+|+|++|||||||+|+|++.....+++.+++|++...+.+...+..+.+|||||+...... ...........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 446999999999999999999999988778999999999888888888889999999997321100 00000001123
Q ss_pred hhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhh---hcCCCceEEEecC
Q 016529 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYE---KFTDVDEVIPVSA 265 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~v~~vSA 265 (388)
.++..+|++++|+|++++....+..+...+.. .++|+++|+||+|+..... ..+....+. ......+++++||
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 45778999999999998776666666666555 6899999999999976433 222222221 1223458999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016529 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
++|.|+++|++.+.+.+..
T Consensus 337 ~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 96
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=5.9e-22 Score=182.96 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=112.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh-
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG- 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~- 193 (388)
..+|+++|.+|||||||+|+|++... .++..|++|.....+.+.. +..+.+|||||+...........+. ..++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~---~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVA---RDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHH---HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHH---HHHHh
Confidence 35899999999999999999999874 3678889888877777766 7899999999975432222222222 2223
Q ss_pred -ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016529 194 -INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 194 -~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
..+|++++|+|+++. .....+. ..+.. .+.|+++|+||+|+............+....+ ++++++||++|.|++
T Consensus 78 ~~~~d~vi~V~D~t~~-e~~~~~~-~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 78 SQRADSILNVVDATNL-ERNLYLT-TQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVD 152 (272)
T ss_dssp TTCCSEEEEEEEGGGH-HHHHHHH-HHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHH
T ss_pred cCCCCEEEEEecCCch-HhHHHHH-HHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHH
Confidence 369999999999863 2222232 33333 57999999999998643221111111222122 489999999999999
Q ss_pred HHHHHHHHhCCC
Q 016529 273 DIRDWILTKLPL 284 (388)
Q Consensus 273 eL~~~i~~~l~~ 284 (388)
+++++|.+.+..
T Consensus 153 el~~~i~~~~~~ 164 (272)
T 3b1v_A 153 QVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHSCTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 97
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.86 E-value=3.2e-22 Score=173.18 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=84.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||+++|.+..+. ....+..+.+.....+..+ ...+.+|||||. ..+. ..+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFR-------TITTA 76 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhh-------hhHHH
Confidence 3458999999999999999999987653 2222333333333333333 378999999994 2222 23456
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+.+...+ .....+.... + .+++++||++
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~ 154 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-G-IKFMETSAKA 154 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-T-CEEEECCC--
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-C-CeEEEEeCCC
Confidence 688999999999998743 23334443333322357899999999999753321 2222333222 2 4899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 155 ~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 155 NINVENAFFTLARDIK 170 (183)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987663
No 98
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.86 E-value=1.5e-21 Score=168.29 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=100.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+. ..+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhH
Confidence 45699999999999999999999877542 2222222222233333 23468999999994 3222 2345
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccC----CCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEE
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIP 262 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~ 262 (388)
.+++.+|++|+|+|++++. .....|+....... ..+.|+++|+||+|+..... .......+.......++++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 6688999999999998753 23333333332211 15789999999999964321 1112222222223458999
Q ss_pred ecCCCCCCHHHHHHHHHHhC
Q 016529 263 VSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l 282 (388)
+||++|.|+++++++|.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.86 E-value=3.8e-21 Score=168.82 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=103.7
Q ss_pred CCCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE-eCCCeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016529 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
.+..+..+|+++|.+|||||||++++.+......+.....+.......+ ......+.+|||||. ..+..+.. .
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~ 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----D 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----C
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----h
Confidence 3445667999999999999999999988543221111222222222222 256689999999995 33332210 0
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhccc---CCCCCCEEEEEeCCCCCChhhH-------h-HHHHHhhhc---
Q 016529 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEI-------A-KKLEWYEKF--- 254 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~---~~~~~piilV~NK~Dl~~~~~~-------~-~~~~~~~~~--- 254 (388)
...+++.+|++|+|+|++++.......+..++.. ...+.|+++|+||+|+...... . .....+...
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 0344788999999999998643333333333322 1268999999999999864321 1 111222221
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 255 TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 255 ~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
....+++++||++ .||+++|+.|++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2235899999999 99999999998765
No 100
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=171.84 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=107.6
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+..+|+|+|.+|||||||+|+|++..+. .....++.......+. .....+.+|||||. ..+..+ +.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~ 80 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RD 80 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCCh--hhhHHH-------HH
Confidence 35679999999999999999999987753 3344444443333333 33358999999995 333322 33
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecC
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.++..+|++++|+|+++.. .....|+..+.... ..+.|+++|+||+|+..... ......+.... + .+++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 158 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-N-VNYVETSA 158 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh-C-CeEEEEeC
Confidence 4577899999999998643 23334433333321 14799999999999975432 22233333332 2 48999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016529 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
++|.|+++++++|.+.+.
T Consensus 159 ~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 101
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.3e-22 Score=173.95 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=108.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
...+|+|+|.+|||||||+|+|++..+.. .....+.+..............+.+||||| ...+. ..+..+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~-------~~~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYR-------TITTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCH-------HHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHH-------HHHHHH
Confidence 44599999999999999999999866432 122334444444445566778999999999 33333 234455
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+..+|++|+|+|+++.. .....|+..+......+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 88999999999998643 333444433333222579999999999996543221 11222222223 389999999999
Q ss_pred CHHHHHHHHHHhC
Q 016529 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 172 gi~~l~~~l~~~i 184 (191)
T 3dz8_A 172 SVRQAFERLVDAI 184 (191)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 102
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=6.7e-22 Score=168.70 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=103.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+ ......+.+|||||. ..+. ..+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ--ERFH-------ALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCc--Hhhh-------hhHHH
Confidence 44699999999999999999999876542 222333322222233 334468999999994 2222 23445
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++++|+|++++. .....|+.........+.|+++|+||+|+.+.... ......... .+ .+++++||++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 152 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-VG-AKHYHTSAKQ 152 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEEBTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CeEEEecCCC
Confidence 678999999999998753 23333333322222257899999999999753321 222233333 23 4899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 153 NKGIEELFLDLCKRMI 168 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988653
No 103
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=8.1e-22 Score=173.46 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=100.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+.. .+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ--ERFRS-------IAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC--TTCHH-------HHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC--cchhh-------hHHHH
Confidence 45699999999999999999999877532 2223333333333334444567999999995 33322 23445
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh------hhH--hHHHHHhhhcCCCceEEE
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEI--AKKLEWYEKFTDVDEVIP 262 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------~~~--~~~~~~~~~~~~~~~v~~ 262 (388)
+..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+... ..+ .....+.... + .++++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~ 175 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY-G-ALFCE 175 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-T-CEEEE
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-C-CeEEE
Confidence 77899999999998653 23333333322222257899999999998632 111 1112222222 2 48999
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 016529 263 VSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+||++|.|+++++++|.+.+.
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 104
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=1.7e-21 Score=166.06 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=98.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||+++|.+.........+ .+....... +......+.+|||||.. .+... ....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~------~~~~~~ 73 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQG--DAGGW------LQDHCL 73 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCcc--ccchh------hhhhhh
Confidence 48999999999999999999987654333222 222222222 33445688999999953 22210 122336
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.+|++++|+|++++. .....++........ .+.|+++|+||+|+.+...+. .....+....+ .+++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 152 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHH 152 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-CcEEEecCccCC
Confidence 6799999999998743 344455555443321 479999999999997433221 12222222223 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 016529 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 153 ~v~~l~~~l~~~i 165 (169)
T 3q85_A 153 NTRELFEGAVRQI 165 (169)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 105
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.86 E-value=2.5e-24 Score=217.37 Aligned_cols=232 Identities=18% Similarity=0.203 Sum_probs=154.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee--eecCCCCceEEeEEEE----------------------------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGI---------------------------------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~---------------------------------- 157 (388)
..++|+|+|.+|+|||||+|+|++.++. .++..++|++......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4569999999999999999999999875 3566666654321110
Q ss_pred --EeCCC---eeEEEEeCCCCcchhhhhhhHH--HHHhHHhhhccccEEEEEEeCCCC-CchHHHHHHHhcccCCCCCCE
Q 016529 158 --CSGPE---YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPI 229 (388)
Q Consensus 158 --~~~~~---~~~~liDtpG~~~~~~~~~~~~--~~~~~~~~~~~ad~ii~VvD~~~~-~~~~~~~l~~~~~~~~~~~pi 229 (388)
+...+ .++.||||||+.......+... +...+..++..+|++|+|+|+++. .......+...+.. .+.|+
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pv 221 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKI 221 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCE
Confidence 00000 3689999999854221111111 234455667899999999999873 45555556666655 56899
Q ss_pred EEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHH
Q 016529 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIRE 309 (388)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire 309 (388)
++|+||+|+....++......+.. ....++++|.... +..+++.+++... +.+.+++.+|+ |
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l~~-------------~~~~~~~~~~~~~-~~~~~~~~~E~--e 283 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALMW--ALGKVVGTPEVLR-------------VYIGSFWSQPLLV-PDNRRLFELEE--Q 283 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHH--HHHHHHCCSSCCC-------------EEESCCSSSCCSS-CTTHHHHHHHH--H
T ss_pred EEEEECCCccCHHHHHHHHHHhhc--chhheeechHhhh-------------hccccCCCCcccC-CCCHHHHHHHH--H
Confidence 999999999987766555544431 1113344443221 1334445555444 67888999887 8
Q ss_pred HHHhhcCCCCCceeEEEE-EEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhHHHHH
Q 016529 310 KIFMQYRNEVPYACQVNV-VSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLA 367 (388)
Q Consensus 310 ~i~~~~~~~vp~s~~v~~-~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~ 367 (388)
+++..+ .++||++.+++ ..+..+. +...|.+.+++++++|+.+++|++|...+.+.
T Consensus 284 ~l~~~l-~elP~~~~v~~i~~~~~~~-~~~~I~a~I~v~~~sqk~i~iGk~g~~~~li~ 340 (550)
T 2qpt_A 284 DLFRDI-QGLPRHAALRKLNDLVKRA-RLVRVHAYIISYLKKEMPTVFGKENKKKQLIL 340 (550)
T ss_dssp HHHHHH-HTTGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred HHHHHh-hhccHHHHHHHHHHHhccC-CeEEEEEEEEEeecccceeEECCchHHHHHHH
Confidence 888886 89999998873 3333322 34668888999999999999999998877654
No 106
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.86 E-value=1.1e-21 Score=174.26 Aligned_cols=161 Identities=20% Similarity=0.142 Sum_probs=108.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|.+..+. .....++.......+ ......+.+|||||. ..+..+ +..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ--EDYSRL-------RPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCC--CCCCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHh
Confidence 5569999999999999999999987753 333333333333333 334468999999995 333322 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH---------hHHHHHhhhcCCCceE
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEV 260 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~v 260 (388)
++..+|++|+|+|++++. ......|...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 588999999999998753 22222233333332247999999999999754331 1122222222234589
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
+++||++|.|+++++++|.+.+...
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999887543
No 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.86 E-value=2.8e-21 Score=170.38 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=104.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE-EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
...+|+++|.+|||||||+++|.+..+.. ...+.++.... ...+......+.+|||||. ..+..+ +..+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCc--hhHHHH-------HHHh
Confidence 44599999999999999999999877642 22222222221 1222333468999999995 333322 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-------------HHHHhhhcCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDV 257 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~ 257 (388)
+..+|++++|+|+++.. ......|...+.....+.|+++|+||+|+........ ....+....+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 88999999999998643 2332334444433235799999999999986432111 11112222334
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 258 ~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
.+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999998754
No 108
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=171.27 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=102.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+. .....++.......+...+ ..+.+|||||. ..+..+ +..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 87 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ--DEFDKL-------RPL 87 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCS--TTCSSS-------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCC--HHHHHH-------hHh
Confidence 5569999999999999999999988753 3444444444443444333 57789999995 333322 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh------------H-hHHHHHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (388)
++..+|++++|+|++++. ......|...+.....+.|+++|+||+|+..... + ......+....+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 578999999999998754 2222223333332225799999999999975321 0 111122222223
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
..+++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 448999999999999999999987653
No 109
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-21 Score=200.29 Aligned_cols=209 Identities=18% Similarity=0.126 Sum_probs=129.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecC------------------------------CCCceEEeEEEEEeCCCe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+|+|++....+... .++.|.+.....+...+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 45699999999999999999999764332211 246677666667777888
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-------CchHHHHHHHhcccCCCC-CCEEEEEeC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNK 235 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~l~~~~~~~~~~-~piilV~NK 235 (388)
++.||||||+.. +...+..++..+|++|+|+|++++ ...........+.. .+ .|+|+|+||
T Consensus 246 ~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNK 314 (611)
T 3izq_1 246 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNK 314 (611)
T ss_dssp EEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEEC
T ss_pred eEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999632 345566778999999999999864 22334444444443 34 459999999
Q ss_pred CCCCCh--hhHhHHH----HHhhhcC---CCceEEEecCCCCCCHHHH--------------HHHHHHhCCCCCCCCCCC
Q 016529 236 KDLIKP--GEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVEDI--------------RDWILTKLPLGPAYYPKD 292 (388)
Q Consensus 236 ~Dl~~~--~~~~~~~----~~~~~~~---~~~~v~~vSA~~g~gi~eL--------------~~~i~~~l~~~~~~~~~~ 292 (388)
+|+.+. ....... ..+.... ...+++++||++|.|+.++ +..++..+......+++.
T Consensus 315 iDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~ 394 (611)
T 3izq_1 315 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEG 394 (611)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSC
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcc
Confidence 999862 2122112 2222211 1358999999999999865 223333343222222223
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCce
Q 016529 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAK 337 (388)
Q Consensus 293 ~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~ 337 (388)
..++.|.++.+.+++| ..+....|......+..|..++|..
T Consensus 395 ~~~~~p~r~~V~~v~~----~~~~~g~g~v~~G~V~~G~lk~Gd~ 435 (611)
T 3izq_1 395 INKDDPFLFSVLEIIP----SKKTSNDLALVSGKLESGSIQPGES 435 (611)
T ss_dssp CSCCSCCEEECCEEEC----CSSSCSSSSEEEEEEEESEECTTCE
T ss_pred cccccchhhheeeeec----cCccCCCeeEEEEEEEeceeccCCE
Confidence 3455555544433221 0000135556677888888776643
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=170.07 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=106.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||+++|.+..... ...+.++.+..... +......+.+|||||.. .+.. . ....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~---~---~~~~ 92 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG--DAGG---W---LRDH 92 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS--GGGH---H---HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCc--cchh---h---hHHH
Confidence 45699999999999999999998765432 23333333333332 33344678999999953 2221 0 1223
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+++.+|++|+|+|+++.. .....|+..+..... .+.|+++|+||+|+.....+ .+...+... .+ .+++++||+
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-~~-~~~~e~Sa~ 170 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-LS-CKHIETSAA 170 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEEEBTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-hC-CEEEEEcCC
Confidence 467899999999998643 344555544433211 47999999999999754322 222222222 23 489999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016529 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.|+++++++|.+.+..
T Consensus 171 ~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTBSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 111
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.1e-21 Score=169.10 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=103.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCce-EEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+... ..............+.+|||||. ..+..+ +..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHHh
Confidence 45699999999999999999999876542 1111111 11111223334568999999994 333322 3344
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcc--cCCCCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~--~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+..+|++++|+|++++. .....++..+.. ....+.|+++|+||+|+...... .......... + .+++++||++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 154 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-K-CAFMETSAKM 154 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-T-CEEEECBTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-C-CeEEEEecCC
Confidence 67899999999998643 222333322211 11146899999999999753221 1222222222 2 4799999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 016529 268 GHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (388)
|.|+++++++|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 155 NYNVKELFQELLTLETRR 172 (199)
T ss_dssp TBSHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988654
No 112
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=2.5e-21 Score=171.04 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=106.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+|+|.+|||||||+|+|.+..+.. ...+..+.......+ ......+.+|||||. ..+.. .+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRT-------ITSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT--TTTTC-------CCGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCCh--HHHHH-------HHHH
Confidence 44699999999999999999999877642 222333322222222 333468999999995 33322 2445
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+ .....+... .+ .+++++||++
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 154 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-NK-MPFLETSALD 154 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CCEEECCTTT
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cC-CeEEEEeCCC
Confidence 688999999999998753 23333333333222357899999999999764322 222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|+++++++|.+.+.
T Consensus 155 g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 155 STNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 113
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=7.2e-22 Score=192.64 Aligned_cols=164 Identities=28% Similarity=0.404 Sum_probs=114.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
...+|+|+|++|+|||||+|+|++.++..++..+++|.+.....+...+. .+.+|||||+.. +..+.......+..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d--~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD--VGELGRLRVEKARRV 110 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC--CCTTCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc--ccchhHHHHHHHHHH
Confidence 45699999999999999999999998876778888888776666665544 899999999743 333322223445667
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016529 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
+..+|++|+|+|+ +.......+...+.. .+.|+++|+||+|+...... .....+....+ .+++++||++|.|++
T Consensus 111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 111 FYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGFD 184 (423)
T ss_dssp HTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTSTT
T ss_pred HhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 8899999999999 444555566666665 58999999999999876544 23333433333 489999999999999
Q ss_pred HHHHHHHHhCCCC
Q 016529 273 DIRDWILTKLPLG 285 (388)
Q Consensus 273 eL~~~i~~~l~~~ 285 (388)
+++++|.+.++..
T Consensus 185 eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 185 DIGKTISEILPGD 197 (423)
T ss_dssp THHHHHHHHSCCC
T ss_pred HHHHHHHHhhhhh
Confidence 9999999999655
No 114
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.9e-21 Score=171.07 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=104.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|.+..+... ...++...... ........+.+|||||.. .+.. .+..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDR-------LRPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT--TCTT-------TGGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcH--HHHH-------HHHh
Confidence 445899999999999999999998776422 22222222212 222334689999999953 3322 2345
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-------------HHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-------------EWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-------------~~~~~~~~ 256 (388)
++..+|++++|+|+++.. ......|...+.....+.|+++|+||+|+.......... ..+....+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 578999999999998643 233233444443323579999999999997543221111 11112223
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
..+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999987643
No 115
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=4.6e-21 Score=166.95 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=104.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE-EEEEeCC-----------CeeEEEEeCCCCcchhhhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~~~~~~~-----------~~~~~liDtpG~~~~~~~~~ 181 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+....+.. ...+... ...+.+|||||. ..+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL--ERFR-- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS--GGGH--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc--HHHH--
Confidence 45699999999999999999999876532 22222222222 2222222 468999999995 3322
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCC
Q 016529 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTD 256 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~ 256 (388)
..+..+++.+|++|+|+|++++. .....++........ .+.|+++|+||+|+...... .......... +
T Consensus 85 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~ 158 (195)
T 3bc1_A 85 -----SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY-G 158 (195)
T ss_dssp -----HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T
T ss_pred -----HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-C
Confidence 23456688999999999998753 223333333332221 57899999999999753221 2222222222 2
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.+++++||++|.|+++++++|.+.+.
T Consensus 159 -~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 159 -IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999987653
No 116
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.2e-21 Score=168.37 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=104.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+++|++..+.........+.......+......+.+|||||... .. .+..++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~-------~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---TI-------QREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---cc-------chhhhh
Confidence 55699999999999999999999887643222211122222223334457899999999643 21 233457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ .+........ + .+++++||++|
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~g 174 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-A-CAFYECSACTG 174 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SEEEECCTTTC
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh-C-CeEEEECCCcC
Confidence 7899999999998743 23333333322211 157899999999999753222 2222222222 2 48999999999
Q ss_pred C-CHHHHHHHHHHhCC
Q 016529 269 H-GVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~-gi~eL~~~i~~~l~ 283 (388)
. |+++++++|.+.+.
T Consensus 175 ~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 175 EGNITEIFYELCREVR 190 (196)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9 99999999987653
No 117
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=180.94 Aligned_cols=158 Identities=19% Similarity=0.196 Sum_probs=111.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+|+|.+|||||||+++|++..+... .+ |.......+...+..+.|||||| +..+..+ +..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHh
Confidence 556999999999999999999998886432 22 33333445666788999999999 4444433 33447
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhc---CCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~vSA~~ 267 (388)
..+|++|+|+|+++.. .....++...+... ..+.|+++|+||+|+........+...+... ....+++++||++
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 8999999999997644 44555666655442 1479999999999998654444443333221 1235799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.||++++++|.+.+..
T Consensus 311 g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TBTHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 118
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.85 E-value=1.5e-22 Score=196.51 Aligned_cols=247 Identities=19% Similarity=0.190 Sum_probs=127.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC---------------------C---CeeEEEEeCCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~liDtpG 172 (388)
+|+|+|.||||||||+|+|++.+ ..+++.|++|.....+.... . ..++.||||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 55788898888766654210 1 35799999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC----------chHH-----------------------------
Q 016529 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----------ERID----------------------------- 213 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~----------~~~~----------------------------- 213 (388)
+.... .....+...+..+++.+|++++|+|++++. ....
T Consensus 81 ~~~~a--~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccch--hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 75321 111112233445678999999999998751 0000
Q ss_pred ---------------------------------------------HHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH
Q 016529 214 ---------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (388)
Q Consensus 214 ---------------------------------------------~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (388)
..+...+.. ..+|+++|+||+|+.....+....
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHH
Confidence 000000000 248999999999988443344444
Q ss_pred HHhhhcCCCceEEEecCCCCCCHHHHHH-HHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCC-------
Q 016529 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP------- 320 (388)
Q Consensus 249 ~~~~~~~~~~~v~~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp------- 320 (388)
+.+... ..+++++||+.+.|+.+|++ .+.++++.+++.|+.+.+++++.+ +.|++||+++..+. +-|
T Consensus 237 ~~~~~~--~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g-~~g~~~~i~~ 311 (397)
T 1wxq_A 237 REEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG-STGVQEVINR 311 (397)
T ss_dssp HHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS-SCSHHHHHHH
T ss_pred HHHhhc--CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC-cchHHHHHHH
Confidence 433322 24799999999999999888 899999999999999988887765 67888887776544 211
Q ss_pred --ceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhc
Q 016529 321 --YACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFL 378 (388)
Q Consensus 321 --~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~ 378 (388)
|..+--+.-+...+....... ..+.+... ++-.+|.++.+++...-.++++-|
T Consensus 312 ~~~~~L~li~vft~~~~~~~~~~---~g~~~~~~--~~l~~G~t~~d~a~~iH~d~~~~f 366 (397)
T 1wxq_A 312 VVFDLLKLIPVYPVHDENKLTDQ---FGNVLPHV--FLMKKGSTPRDLAFKVHTDLGKGF 366 (397)
T ss_dssp HHHTTSCEEEEEEESCC-----C---CSCSSCCC--EEEETTCCHHHHHHHHCHHHHHTE
T ss_pred HHHHHhCCeEEEeecccccccCC---cCccccee--EEeCCCCCHHHHHHHHhHHHHhhh
Confidence 111111111111100000000 00011122 223889999999999999999865
No 119
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=1.6e-21 Score=165.80 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=104.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|.+..+.. ...+..+.+..... +......+.+|||||. ..+..+ +..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHH
Confidence 45699999999999999999999876542 22222222222222 2333568999999994 333332 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++++|+|++++. .....++....... .+.|+++|+||+|+..... ........... + .+++++||++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 150 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-K-LRFYRTSVKE 150 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEECBTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHc-C-CeEEEEecCC
Confidence 578999999999998753 33333433333222 5789999999999975332 12222222222 2 4899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 016529 268 GHGVEDIRDWILTKL 282 (388)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (388)
|.|+++++++|.+.+
T Consensus 151 ~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKH 165 (168)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 120
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.85 E-value=5.1e-21 Score=166.71 Aligned_cols=158 Identities=21% Similarity=0.190 Sum_probs=101.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+..+|+++|.+|||||||+|+|++..+. .....++.......+. .....+.+|||||. ..+. ..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 87 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYS-------AMRD 87 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHH
Confidence 45569999999999999999999987653 2333344333333333 33456999999994 2222 2334
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCC
Q 016529 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ........... + .+++++||+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 165 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY-G-IPFIETSAK 165 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-T-CCEEECCTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc-C-CeEEEEeCC
Confidence 5588999999999998753 22333332222211 14789999999999975321 12222222222 2 379999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 016529 267 YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (388)
+|.|+++++++|.+.+.
T Consensus 166 ~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 166 TRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987663
No 121
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=1.6e-22 Score=202.90 Aligned_cols=214 Identities=18% Similarity=0.179 Sum_probs=137.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee---------------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------------VTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG 172 (388)
+.++|+|+|++|+|||||+|+|++....+ ....++.|.......+.+.+..+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 44589999999999999999996211100 011134444444455667789999999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHH
Q 016529 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (388)
+.. +. ..+..+++.+|++|+|+|++++.......++..+.. .++|+++|+||+|+..... +.++.+
T Consensus 92 ~~d--f~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~~~~~~l~ei~~ 160 (528)
T 3tr5_A 92 HAD--FT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTRPSIELLDEIES 160 (528)
T ss_dssp STT--CC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCSCHHHHHHHHHH
T ss_pred chh--HH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHHH
Confidence 643 22 235566889999999999999887777777776666 6899999999999975332 111111
Q ss_pred Hhhh----------------------------------------------------------------------------
Q 016529 250 WYEK---------------------------------------------------------------------------- 253 (388)
Q Consensus 250 ~~~~---------------------------------------------------------------------------- 253 (388)
.+..
T Consensus 161 ~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~ 240 (528)
T 3tr5_A 161 ILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPF 240 (528)
T ss_dssp HHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCC
T ss_pred hhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 1110
Q ss_pred ------cCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCC-CCCceeEEE
Q 016529 254 ------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRN-EVPYACQVN 326 (388)
Q Consensus 254 ------~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~-~vp~s~~v~ 326 (388)
.....|+|++||++|.||++|++.|.+.+|.+....+...........+.+-++ ++...+++ .+|..++++
T Consensus 241 ~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VF--Ki~~~~dp~~~g~l~~~R 318 (528)
T 3tr5_A 241 EREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVF--KIQANMDPGHRDRIAFLR 318 (528)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEE--EEEECCC-CCCCEEEEEE
T ss_pred HHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEE--EEecccCccCCceEEEEE
Confidence 112338999999999999999999999998753321111000000000000000 11112355 788999999
Q ss_pred EEEEEecCCceEEE
Q 016529 327 VVSYKTRPTAKDFI 340 (388)
Q Consensus 327 ~~~~~~~~~~~~~i 340 (388)
+.+|..+.|..+++
T Consensus 319 V~sG~l~~g~~v~~ 332 (528)
T 3tr5_A 319 IASGQYQKGMKAYH 332 (528)
T ss_dssp EEESCEETTEEEEE
T ss_pred EecCeEcCCCEEEe
Confidence 99998887755443
No 122
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.1e-21 Score=171.61 Aligned_cols=160 Identities=22% Similarity=0.221 Sum_probs=102.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+|+|.+|||||||+|+|++....++...+.++.+.... .+......+.+|||+|.... .. . ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~-----~--l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE-----W--LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH-----H--HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh-----h--HHHH
Confidence 4468999999999999999999976543333333332222222 23333456789999995321 11 1 1234
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|+++.. .....|+..+... ...+.|+++|+||+|+.....+.. ....+....+ +++++|||++
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 578899999999998643 3344444333321 125799999999999975332211 1111111112 4899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 016529 268 GHGVEDIRDWILTKL 282 (388)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (388)
|.||+++|++|.+.+
T Consensus 187 g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 187 QHNVKELFEGIVRQV 201 (211)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998865
No 123
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=3.5e-21 Score=171.53 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=103.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCC----------CeeEEEEeCCCCcchhhhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGP----------EYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~----------~~~~~liDtpG~~~~~~~~~ 181 (388)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+... ..+... ...+.+|||||. ..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~--- 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--ERF--- 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--HHH---
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc--HhH---
Confidence 45699999999999999999999877531 111111111111 122222 568999999993 332
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCC
Q 016529 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTD 256 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~ 256 (388)
...+..++..+|++|+|+|+++.. .....|+..+..... .+.|+++|+||+|+.....+ .....+... .+
T Consensus 98 ----~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-~~ 172 (217)
T 2f7s_A 98 ----RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-YG 172 (217)
T ss_dssp ----HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TT
T ss_pred ----HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-CC
Confidence 233556688999999999998643 223333333322211 57899999999999754322 222222222 23
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.+++++||++|.|+++++++|.+.+.
T Consensus 173 -~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 173 -IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp -CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred -CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999987653
No 124
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.85 E-value=1.8e-21 Score=170.12 Aligned_cols=158 Identities=19% Similarity=0.130 Sum_probs=102.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecC-------CCCceEEeEEE-----EEeCCCeeEEEEeCCCCcchhhhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~-----~~~~~~~~~~liDtpG~~~~~~~~~ 181 (388)
+..+|+++|.+|||||||++.+.+........ ....|...... .+......+.+|||||. ..+..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH
Confidence 45699999999999999998877643321111 01112211111 22334568999999995 333333
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCC--------chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh
Q 016529 182 DSMMMKNVRSAGINADCIVVLVDACKAP--------ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~--------~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (388)
+..+++.+|++|+|+|++++. .....|+... +....+.|+++|+||+|+.......+.......
T Consensus 91 -------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 91 -------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP 162 (198)
T ss_dssp -------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT
T ss_pred -------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-ccccCCCCEEEEEEchhcccccCHHHHHHHHHh
Confidence 334588999999999998542 1122222222 222367999999999999765444444444433
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 254 ~~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
.+..+++++||++|.|+++++++|.+.+
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 3333899999999999999999998765
No 125
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=1.5e-21 Score=169.48 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=103.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|.+..+. .....+....... .+......+.+|||||. ..+..+ ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4569999999999999999999987764 2222222222222 23344578999999995 333322 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--------------HhHHHHHhhhcC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------IAKKLEWYEKFT 255 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~~~ 255 (388)
++..+|++++|+|++++. ......|...+.....+.|+++|+||+|+..... ..+...+... .
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 153 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ-I 153 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-H
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH-c
Confidence 578999999999998743 2221223333333235799999999999974211 1112222222 2
Q ss_pred CCceEEEecCC-CCCCHHHHHHHHHHhC
Q 016529 256 DVDEVIPVSAK-YGHGVEDIRDWILTKL 282 (388)
Q Consensus 256 ~~~~v~~vSA~-~g~gi~eL~~~i~~~l 282 (388)
+..+++++||+ +|.|+++++++|.+.+
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 33589999999 6899999999998754
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.3e-21 Score=172.75 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=102.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+|+|.+|||||||+++|++..+.... .+..+.......+. .....+.+|||||. ..+.. .+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRA-------ITSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTC-------CCGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCc--cchhh-------hHHH
Confidence 3469999999999999999999988765322 22222222222222 33368999999995 33332 2445
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|++++. .....|+..+......+.|++||+||+|+.....+ .....+... .+ .+++++||++
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~ 159 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-NQ-LLFTETSALN 159 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCCC-
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 688999999999998753 23333443333222257899999999999753322 222233322 22 4899999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 016529 268 GHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (388)
|.||++++++|.+.+...
T Consensus 160 ~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 160 SENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 127
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=168.14 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=103.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+. .....++..... ..+......+.+|||||. ..+..+ ..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~--------~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNC--------ER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhH--------HH
Confidence 5569999999999999999999987753 333334433322 223344568899999995 333332 23
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEec
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vS 264 (388)
++..+|++++|+|+++.. .....|+..+.... ..+.|+++|+||+|+.....+ .+...+.... + .+++++|
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~e~S 165 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-G-CLFFEVS 165 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEECC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-C-CcEEEEe
Confidence 477899999999998643 33334443333221 157999999999999643222 2222233222 2 4899999
Q ss_pred C-CCCCCHHHHHHHHHHhC
Q 016529 265 A-KYGHGVEDIRDWILTKL 282 (388)
Q Consensus 265 A-~~g~gi~eL~~~i~~~l 282 (388)
| ++|.||++++++|.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHH
Confidence 9 89999999999998765
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.84 E-value=3.9e-20 Score=177.73 Aligned_cols=166 Identities=25% Similarity=0.378 Sum_probs=118.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+.++|+++|.+|||||||+|+|++.... +...+++|.......+...+..+.+|||||+....................
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 5569999999999999999999998743 566777777776666666678899999999754332222111112233344
Q ss_pred ccccEEEEEEeCCCCC----chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016529 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~----~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
..+|++++|+|++++. .....++....... .+.|+++|+||+|+.....+.......... ..+++++||++|+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~iSA~~g~ 321 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKEK--GLNPIKISALKGT 321 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHHT--TCCCEECBTTTTB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHhc--CCCeEEEeCCCCc
Confidence 5799999999987643 22333443333321 379999999999998776554444444332 3478999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016529 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.+.
T Consensus 322 gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 322 GIDLVKEEIIKTLR 335 (357)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 129
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.84 E-value=3.5e-21 Score=169.86 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=77.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE-EeEEEEEeCC----CeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
+..+|+++|.+|||||||+++|++...........++. +.....+... ...+.+|||||+ .. +...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~-------~~~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS--DL-------YKEQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--HH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--HH-------HHHH
Confidence 44599999999999999999999883222233333332 3333333433 568999999995 22 2234
Q ss_pred HHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCC---CCCCEEEEEeCCCCCC-hhhH--hHHHHHhhhcCCCceE
Q 016529 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGEI--AKKLEWYEKFTDVDEV 260 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~~-~~~~--~~~~~~~~~~~~~~~v 260 (388)
+..++..+|++|+|+|++++. .....|+..+..... .+.|+++|+||+|+.. ...+ .+...+.... + .++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~-~~~ 167 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-T-LDF 167 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-T-CEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-C-CEE
Confidence 556788999999999998754 333444444333222 4789999999999976 3322 2233333332 2 589
Q ss_pred EEecCCC-CCCHHHHHHHHHHhCC
Q 016529 261 IPVSAKY-GHGVEDIRDWILTKLP 283 (388)
Q Consensus 261 ~~vSA~~-g~gi~eL~~~i~~~l~ 283 (388)
+++||++ |.|+++++++|.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC-------CHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHH
Confidence 9999999 9999999999998663
No 130
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.84 E-value=4.5e-22 Score=190.95 Aligned_cols=203 Identities=19% Similarity=0.209 Sum_probs=131.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee-----eecCCCC----------------------ceEE--------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRH-------------- 152 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~-----~~~~~~~----------------------~t~~-------------- 152 (388)
..++|+|+|.+|||||||+|+|+|.++. .++..|+ +|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5579999999999999999999998864 3333343 1111
Q ss_pred ---------e-EEEEEeCCCeeEEEEeCCCCcchh----hhhhhHHHHHhHHhhhcc-ccEEEEEEeCCCCCchHHH-HH
Q 016529 153 ---------R-ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAPERIDE-IL 216 (388)
Q Consensus 153 ---------~-~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~-ad~ii~VvD~~~~~~~~~~-~l 216 (388)
. ..........++.||||||+.... .......+...+..++.. ++++++|+|++......+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0 011122234689999999985421 112222333444455544 4566777787765544433 24
Q ss_pred HHhcccCCCCCCEEEEEeCCCCCChhh-HhHHHHHh--hhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCc
Q 016529 217 EEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (388)
Q Consensus 217 ~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~--~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (388)
.+.+.. .+.|+++|+||+|+.+... ........ ....++.+++++||++|.|++++++++.+ +.++.++.+.
T Consensus 190 ~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~f~~~~~ 264 (353)
T 2x2e_A 190 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHPS 264 (353)
T ss_dssp HHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHHHHHCTT
T ss_pred HHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH---HHHHhccCCc
Confidence 555544 6799999999999986533 22221110 00123457889999999999999999987 3334444444
Q ss_pred cCCcchH---HHHHHHHHHHHHhhcCCCCCc
Q 016529 294 VSEHPER---FFVGEIIREKIFMQYRNEVPY 321 (388)
Q Consensus 294 ~~~~~~~---~~~~eiire~i~~~~~~~vp~ 321 (388)
.++.+.+ ..+.++++++++..+..++||
T Consensus 265 ~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~ 295 (353)
T 2x2e_A 265 YRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 295 (353)
T ss_dssp TGGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 788999999999999999998
No 131
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.84 E-value=1.6e-22 Score=177.92 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=99.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+. .....+.+|||||. ..+..+ +..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTC--TTCCCC-------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 45699999999999999999999877642 2222233233333333 33368999999994 333222 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|++|+|+|+++.. .....|+..+......+.|+++|+||+|+....... ........ .+ .+++++||++
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~vSA~~ 179 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-LG-IPFLETSAKN 179 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-TT-CCBCCCCC--
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHH-cC-CeEEEEECCC
Confidence 578999999999998754 233344443433323578999999999997543221 11122222 22 4789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016529 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 180 g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 180 ATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp -HHHHHHHHHHTTTTTT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 132
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=3.2e-21 Score=170.76 Aligned_cols=157 Identities=16% Similarity=0.145 Sum_probs=102.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|.+..+. .....+........ +......+.+|||||. ..+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHh
Confidence 4569999999999999999999988764 22222222222222 2344578999999995 333332 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--------------HhHHHHHhhhcC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------IAKKLEWYEKFT 255 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~~~ 255 (388)
++..+|++|+|+|+++.. ......|...+.....+.|+++|+||+|+..... ..+...+... .
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 174 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ-I 174 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-H
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH-c
Confidence 578999999999998743 2221223333333235799999999999974210 1111222222 2
Q ss_pred CCceEEEecCC-CCCCHHHHHHHHHHhC
Q 016529 256 DVDEVIPVSAK-YGHGVEDIRDWILTKL 282 (388)
Q Consensus 256 ~~~~v~~vSA~-~g~gi~eL~~~i~~~l 282 (388)
+..+++++||+ +|.||++++++|.+.+
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 33589999999 6899999999998754
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=4e-20 Score=185.40 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=115.6
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+|+|.+|||||||+|+|++.++.. .. .|.......+...+..+.+|||||. ..+..+ +..+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~~--~T~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 386 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT--TI--PTVGFNVETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHY 386 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC--CC--CCSSEEEEEEESSSCEEEEEEECCC--GGGSGG-------GGGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC--cC--CccceeEEEEEeCCEEEEEEECCCc--HHHHHH-------HHHH
Confidence 345699999999999999999999887542 22 2444445567778899999999994 333332 4566
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~ 266 (388)
+..+|++|+|+|+++.. .....++..++.... .++|+|||+||+|+............+.. .....+++++||+
T Consensus 387 ~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 466 (497)
T ss_dssp GTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTT
T ss_pred hccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECC
Confidence 89999999999998753 445556666554321 57999999999999764333333333221 1123479999999
Q ss_pred CCCCHHHHHHHHHHhCCCC
Q 016529 267 YGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~ 285 (388)
+|.||++++++|.+.+...
T Consensus 467 ~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp TTBTHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=5.4e-21 Score=181.79 Aligned_cols=169 Identities=25% Similarity=0.274 Sum_probs=117.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchh--hhhhhHHHHHhHHhh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~ 192 (388)
++|+|+|.+|||||||+|+|++.+.. +...+.+|..+....+...+ ..+.+|||||+.... ...+... +...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~----fl~~ 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ----FLRH 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH----HHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH----HHHH
Confidence 37999999999999999999987754 47788888877777777664 789999999974321 1223222 2333
Q ss_pred hccccEEEEEEeCCC---CC--chHHHHHHHhcccC--CCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEec
Q 016529 193 GINADCIVVLVDACK---AP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~---~~--~~~~~~l~~~~~~~--~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vS 264 (388)
+..+|++|+|+|+++ .. .....++.++.... ..++|+++|+||+|+....+ ...+... .....+++++|
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~---l~~~~~v~~iS 310 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK---LTDDYPVFPIS 310 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH---CCSCCCBCCCS
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH---hhcCCCEEEEE
Confidence 567999999999976 22 22333333322211 14799999999999986543 2222222 22225789999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCC--CCCCC
Q 016529 265 AKYGHGVEDIRDWILTKLPLGPA--YYPKD 292 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~--~~~~~ 292 (388)
|+++.|+++|+++|.+.+...++ .|+.+
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~~e 340 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYDEE 340 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSCSC
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCCcc
Confidence 99999999999999999877655 45443
No 135
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.83 E-value=6.8e-21 Score=196.24 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=145.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEE-----------------------------------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~----------------------------------------- 152 (388)
.-|+|+|+|.+|+|||||+|+|+|..+......+ +|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4469999999999999999999998763222211 1111
Q ss_pred ----------e-EEEEEeCCCeeEEEEeCCCCcchh----hhhhhHHHHHhHHhhh-ccccEEEEEEeCCCCCchHHH-H
Q 016529 153 ----------R-ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-I 215 (388)
Q Consensus 153 ----------~-~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~-~~ad~ii~VvD~~~~~~~~~~-~ 215 (388)
. ...+......++.|+||||+.... ...+...+...+..++ ..+|++++|+|++.+....+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 1 111222334578999999986522 1111222223333333 578999999999987655554 4
Q ss_pred HHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCCCCHHHHHHHHHH---hCCCCCCCC
Q 016529 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYY 289 (388)
Q Consensus 216 l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g~gi~eL~~~i~~---~l~~~~~~~ 289 (388)
+...+.. .+.|+++|+||+|+.+............. ..++.+++++||++|.|+++|++.|.+ .++.+|++
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y- 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY- 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch-
Confidence 6666665 67999999999999865432211111111 124567899999999999999999987 46666665
Q ss_pred CCCccCCcchHHHHHHHHHHHHHhhcCCCCCc----------eeEEEEEEE
Q 016529 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVNVVSY 330 (388)
Q Consensus 290 ~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~----------s~~v~~~~~ 330 (388)
+.+++++.++.+++++|++++...+.++|| ++.+.+..+
T Consensus 286 --d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~ 334 (772)
T 3zvr_A 286 --RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEY 334 (772)
T ss_dssp --GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHh
Confidence 667889999999999999999999999999 666655544
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=1.4e-20 Score=171.54 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=115.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCC-CceEEeEEEEEeCCCeeEEEEeCCCCcchhhh---hhhHHHHHhH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNV 189 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~ 189 (388)
...+|+++|.+|||||||+|+|++.+.......+ ++|...........+..+.+|||||+...... .......+.+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999999998876544333 47777777777788899999999998542211 1112222333
Q ss_pred HhhhccccEEEEEEeCCCCCchHHHHHHHhcccC----CCCCCEEEEEeCCCCCChhhH--------hHHHHHhhhcCCC
Q 016529 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEI--------AKKLEWYEKFTDV 257 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~~~--------~~~~~~~~~~~~~ 257 (388)
......+|++|+|+|+++ ....+.++.+.+... ..+.|+++|+||+|+...... ............
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~- 177 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG- 177 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-
Confidence 334589999999999985 544444444433321 126899999999999753211 112233333333
Q ss_pred ceEEEecCCC-----CCCHHHHHHHHHHhCCC-CCCCCCCCcc
Q 016529 258 DEVIPVSAKY-----GHGVEDIRDWILTKLPL-GPAYYPKDIV 294 (388)
Q Consensus 258 ~~v~~vSA~~-----g~gi~eL~~~i~~~l~~-~~~~~~~~~~ 294 (388)
.++.+++.. +.|+++|++.|.+.++. ++.+|+.++.
T Consensus 178 -~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~ 219 (247)
T 3lxw_A 178 -RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 219 (247)
T ss_dssp -CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH
T ss_pred -eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 344455443 58999999999999874 6677777643
No 137
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=1.2e-20 Score=165.21 Aligned_cols=161 Identities=22% Similarity=0.254 Sum_probs=99.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||+|+|++.....++..+.++.+.... .+......+.+|||+|.... ...+ ...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~-------~~~ 76 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWL-------HDH 76 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhH-------HHh
Confidence 3468999999999999999999975443333333332222222 23333457789999995321 1112 233
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+++.+|++++|+|+++.. .....|+..+... ...+.|+++|+||+|+.....+.. ....+....+ .++++|||++
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~ 155 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAV 155 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEecccc
Confidence 467799999999998643 3333343322221 115789999999999964332211 1112222222 4899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016529 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.||+++|++|.+.+.
T Consensus 156 g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 156 QHNVKELFEGIVRQVR 171 (192)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998763
No 138
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=5e-20 Score=181.45 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+|+|++....+. ...++.|.+.....+...+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 456999999999999999999965432211 11256777777777888888
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCc-------hHHHHHHHhcccCCCCCC-EEEEEeC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNK 235 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~-------~~~~~l~~~~~~~~~~~p-iilV~NK 235 (388)
++.||||||+ .. +...+..++..+|++|+|+|++++.. .+.......+.. .+.| +++|+||
T Consensus 96 ~~~iiDTPGh--~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGH--KS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCCh--HH-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 9999999994 32 34455566889999999999998753 244444444444 4566 9999999
Q ss_pred CCCCCh----hhHhHH----HHHhhhcC----CCceEEEecCCCCCCHHHHHH
Q 016529 236 KDLIKP----GEIAKK----LEWYEKFT----DVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 236 ~Dl~~~----~~~~~~----~~~~~~~~----~~~~v~~vSA~~g~gi~eL~~ 276 (388)
+|+... ...... ...+.... ...+++++||++|.|++++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999642 111111 12222211 135799999999999999544
No 139
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=1e-19 Score=171.08 Aligned_cols=164 Identities=14% Similarity=0.112 Sum_probs=113.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+|+++|.+|||||||+|++++.....++..+++|......... .++..+.+|||||. ..+ ....+...+..++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~--~~~--~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ--DVF--MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS--HHH--HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCc--HHH--hhhhhhhHHHHHh
Confidence 358999999999999999999988655556677777766655554 35789999999995 332 1111223445567
Q ss_pred ccccEEEEEEeCCCCC--chHHHHH--HHhcccCCCCCCEEEEEeCCCCCChhhHh-------HHHHHhhhcCC--CceE
Q 016529 194 INADCIVVLVDACKAP--ERIDEIL--EEGVGDHKDKLPILLVLNKKDLIKPGEIA-------KKLEWYEKFTD--VDEV 260 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l--~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------~~~~~~~~~~~--~~~v 260 (388)
+.+|++|+|+|+++.. .....|. ...+.....+.|+++|+||+|+....... .....+....+ ..++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 8999999999999865 2222221 11222212579999999999998733221 22233333334 3689
Q ss_pred EEecCCCCCCHHHHHHHHHHhCC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+++||++ .|+.+++..+...+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999988887664
No 140
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=1.1e-19 Score=157.90 Aligned_cols=162 Identities=27% Similarity=0.326 Sum_probs=99.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHhh-
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA- 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~- 192 (388)
.+|+++|.+|||||||+|+|++..+. ....+++|......... .+.+|||||+..... ......+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999998764 45566666554433322 789999999632110 00011122222222
Q ss_pred ---hccccEEEEEEeCCCCCchHHHH-----------HHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcCC
Q 016529 193 ---GINADCIVVLVDACKAPERIDEI-----------LEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTD 256 (388)
Q Consensus 193 ---~~~ad~ii~VvD~~~~~~~~~~~-----------l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~ 256 (388)
...++++++|+|..+.......| +...+.. .+.|+++|+||+|+.... ....+...+.....
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh
Confidence 44567888888865321111222 2222222 579999999999998654 12222222211000
Q ss_pred --CceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 257 --VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 257 --~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
..+++++||++|.|+++++++|.+.+..
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 1258999999999999999999987643
No 141
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=6.4e-20 Score=159.27 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=100.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCc-eEEeEEEEE-----eCCCeeEEEEeCCCCcchhhhhhhHHHHHhH
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGIC-----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~-t~~~~~~~~-----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (388)
.+|+++|++|||||||+++|.+...........+ ..+.....+ ......+.+|||||. ..+..+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~------- 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--EEFYSTH------- 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH--HHHHTTS-------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC--HHHHHhh-------
Confidence 4899999999999999999998632222222222 222222221 124578999999994 3333332
Q ss_pred HhhhccccEEEEEEeCCCCC---chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh----HHHHHhhhcCCCc---e
Q 016529 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVD---E 259 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~---~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~ 259 (388)
..++..+|++++|+|.+++. .....|+...... ..+.|+++|+||+|+....... .....+....+.. +
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 33467899999999998753 3344444443322 2478999999999998765442 2223333223332 3
Q ss_pred EEEecCCCCC-CHHHHHHHHHHhCCC
Q 016529 260 VIPVSAKYGH-GVEDIRDWILTKLPL 284 (388)
Q Consensus 260 v~~vSA~~g~-gi~eL~~~i~~~l~~ 284 (388)
++++||++|. |+++|++.|.+.+..
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999997 999999999887754
No 142
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=7.2e-22 Score=174.39 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=103.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||+++|++..+. .....++....... .......+.+|||||. ..+. ..+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYD-------RLRPL 97 (204)
Confidence 5569999999999999999999987653 22333333332222 2334456779999995 3322 23344
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-------------HHHHHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (388)
++..+|++++|+|++++. ......|...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 578999999999998654 333323444444322479999999999997543111 01111112223
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 33789999999999999999988654
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=8.7e-20 Score=175.13 Aligned_cols=169 Identities=22% Similarity=0.199 Sum_probs=108.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
.|+|+|++|||||||+|+|++... .+.+.+++|.+.....+...+..+.+|||||+.......+.+.+ ..+...+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhC
Confidence 599999999999999999999876 46778888888777777777789999999997443222222323 3344567899
Q ss_pred cEEEEEEeCCCCCc---hHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHh--HHH-HHhhhc-CCCceEEEecCCCC
Q 016529 197 DCIVVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA--KKL-EWYEKF-TDVDEVIPVSAKYG 268 (388)
Q Consensus 197 d~ii~VvD~~~~~~---~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~--~~~-~~~~~~-~~~~~v~~vSA~~g 268 (388)
|++++|+|++++.. .....+...+.... .+.|+++|+||+|+.+..... ... ...... ....+++++||++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 99999999987541 11112222222211 578999999999998643111 111 111222 22346899999999
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q 016529 269 HGVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (388)
.|+++|+++|.+.+..+++
T Consensus 339 ~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp BSHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccCC
Confidence 9999999999987765443
No 144
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=1.4e-19 Score=180.18 Aligned_cols=160 Identities=24% Similarity=0.326 Sum_probs=111.4
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCc----e--eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHH
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQK----L--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~----~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 186 (388)
++..+|+++|++|+|||||+++|++.. . ...+..++.|.+.....+...+..+.+|||||+ .. +.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh--~~-------~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH--AD-------LI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH--HH-------HH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh--HH-------HH
Confidence 456799999999999999999999876 1 112344555655544445557789999999994 32 34
Q ss_pred HhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH----HHhhhc--CCCceE
Q 016529 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF--TDVDEV 260 (388)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~~--~~~~~v 260 (388)
..+...+..+|++|+|+|++++...+.......+.. .+.|+++|+||+|+.+........ ..+... ....++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 455667889999999999998876666555555555 578999999999998754433222 222221 113589
Q ss_pred EEecCCCCCCHHHHHHHHHHhCC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+++||++|.|+++|+++|.+.++
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998654
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.81 E-value=2.1e-19 Score=175.36 Aligned_cols=163 Identities=19% Similarity=0.187 Sum_probs=107.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe--------------EEEEE-----eCCCeeEEEEeCCCCc
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--------------ILGIC-----SGPEYQMILYDTPGII 174 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--------------~~~~~-----~~~~~~~~liDtpG~~ 174 (388)
...+|+++|++|+|||||+|+|++...........++... ..... ......+.+|||||+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh- 85 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH- 85 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc-
Confidence 4569999999999999999999985322100000000000 00000 011167999999994
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh
Q 016529 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (388)
..+ ...+...+..+|++|+|+|++++. ......+...+... ...|+++|+||+|+.+........+.+..
T Consensus 86 -~~~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 86 -EVL-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp -GGG-------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred -HHH-------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHH
Confidence 332 334555678999999999999875 44444444444432 33689999999999987654433333322
Q ss_pred c-----CCCceEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 016529 254 F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 254 ~-----~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
. ....+++++||++|.|+++|+++|.+.++.+.
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 1 12458999999999999999999999887543
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=3.6e-21 Score=192.43 Aligned_cols=159 Identities=20% Similarity=0.257 Sum_probs=117.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
|+++|+++|++|+|||||+++|.+.++.. ...+++|.+.....+.. .+..+.||||||+ ..+..+ +..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh--e~f~~~-------~~~~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGH--AAFSAM-------RARG 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSS--CCTTTS-------BBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCCh--HHHHHH-------HHHH
Confidence 67799999999999999999999887653 45566676655444444 4568999999995 333332 3345
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHh----hhcCCCceEEEecCC
Q 016529 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWY----EKFTDVDEVIPVSAK 266 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~----~~~~~~~~v~~vSA~ 266 (388)
+..+|++|+|+|++++........+..+.. .+.|+++|+||+|+..... .......+ ..+....+++++||+
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 788999999999999887766666666655 6789999999999974321 11111111 122234589999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016529 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.|+++|+++|...++.
T Consensus 151 tG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 151 TGENMMALAEATIALAEM 168 (537)
T ss_dssp SSCSSHHHHHHHHHHHTT
T ss_pred CCCCchhHHHHHHHhhhc
Confidence 999999999999987654
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=3e-19 Score=165.28 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=96.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCC--eeEEEEeCCCCcch-----hhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHM 180 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~-----~~~~ 180 (388)
..+|+++|.+|+|||||+|+|++.+...... .+..+.......+...+ ..+.+|||||+... .+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 3589999999999999999999887654332 22233333333444433 48999999998421 1222
Q ss_pred hhHHHHHhHHhhhc-------------cccEEEEEEeCCC-CCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH
Q 016529 181 LDSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (388)
Q Consensus 181 ~~~~~~~~~~~~~~-------------~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (388)
+...+......++. .+|+++|+++.+. +....+..+...+.. ++|+++|+||+|+....+...
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHH
Confidence 22222222222222 3778999987664 667777777766654 799999999999987766544
Q ss_pred HHHHhhhc--CCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 247 KLEWYEKF--TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 247 ~~~~~~~~--~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
....+... ....+++++||+++.|+++++++|.+.+|.
T Consensus 165 ~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 165 FKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 33322211 122468899999999999999999998864
No 148
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=4.5e-21 Score=190.19 Aligned_cols=222 Identities=15% Similarity=0.133 Sum_probs=136.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
|.++|+++|++|+|||||+++|.+..+. ....++.|.+.....+..++..+.||||||+ ..+..+ +...+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh--e~f~~~-------~~~~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGH--AAFTSM-------RARGA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTT--TCCTTS-------BCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCc--HHHHHH-------HHHHH
Confidence 6789999999999999999999876543 2333455555444445566778999999995 444332 23457
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHH---Hh-hhcCCCceEEEecCCC
Q 016529 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLE---WY-EKFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~---~~-~~~~~~~~v~~vSA~~ 267 (388)
..+|++|+|+|++++........+..+.. .+.|+++++||+|+.... .+..... .+ ..+.+..+++++||++
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 88999999999998765444444444444 678999999999997532 1111000 00 1112235899999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCceEEEEEEEEE
Q 016529 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVV 346 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~ 346 (388)
|.|+++|+++|.......+...+. +.+.... ++. ...+..|....+.+..|..+++....+ .
T Consensus 151 G~gI~eLle~I~~~~~~~~~~~~~----~~~~~~~--------V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~-----g 213 (501)
T 1zo1_I 151 GTGIDELLDAILLQAEVLELKAVR----KGMASGA--------VIESFLDKGRGPVATVLVREGTLHKGDIVLC-----G 213 (501)
T ss_dssp CTTCTTHHHHTTTTCCCSTTTSCC----CSBCEEE--------EEEEEECSSSSEEEEEEEEESBCCTTCEEEE-----E
T ss_pred ccCcchhhhhhhhhhhhhcccccc----ccccccc--------eEEEEEeCCcEEEEEEEEEeeEEecCCEEEE-----c
Confidence 999999999998653211111111 1111000 011 124566777777777777776643332 1
Q ss_pred eeCCeeeEEEecCChhHH
Q 016529 347 EKNSQKIILIGKGGKALK 364 (388)
Q Consensus 347 e~~~q~~~vig~~g~~i~ 364 (388)
...++...+.+..|..++
T Consensus 214 ~~~~kVr~i~~~~g~~v~ 231 (501)
T 1zo1_I 214 FEYGRVRAMRNELGQEVL 231 (501)
T ss_dssp BSSCEEEEECCTTTTSEE
T ss_pred cceeEEEEEEecCCCcCc
Confidence 233444445555554443
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.80 E-value=2.7e-19 Score=181.42 Aligned_cols=197 Identities=21% Similarity=0.244 Sum_probs=120.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee--------------cCCCCceEEeEEEEEe-----CCCeeEEEEeCCCCcc
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------------TNKPQTTRHRILGICS-----GPEYQMILYDTPGIIE 175 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~--------------~~~~~~t~~~~~~~~~-----~~~~~~~liDtpG~~~ 175 (388)
..+|+|+|++|+|||||+++|++....+. ....+.|.......+. ..+..++||||||+.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~- 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV- 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch-
Confidence 34899999999999999999985321110 0112333332222222 224789999999963
Q ss_pred hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcC
Q 016529 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (388)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (388)
.+. ..+..++..+|++|+|+|++++........+..... .+.|+++|+||+|+..... ......+....
T Consensus 83 -dF~-------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~-~~v~~ei~~~l 151 (599)
T 3cb4_D 83 -DFS-------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADP-ERVAEEIEDIV 151 (599)
T ss_dssp -GGH-------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCH-HHHHHHHHHHT
T ss_pred -HHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccH-HHHHHHHHHHh
Confidence 322 234455788999999999998875554444333333 5789999999999986432 22222222222
Q ss_pred CC--ceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHH-hhcCCCCCceeEEEEEEEEe
Q 016529 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSYKT 332 (388)
Q Consensus 256 ~~--~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~-~~~~~~vp~s~~v~~~~~~~ 332 (388)
+. .+++++||++|.|+++|+++|.+.++.+... .+.|.+..+ + ..+++.+|..+.+++..|..
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~------~~~p~~alI--------~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGD------PEGPLQALI--------IDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCC------TTSCCEEEE--------EEEEEETTTEEEEEEEEEESCE
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCCcccc------ccCCceeee--------eeccccccccEEEEEEEEeCEE
Confidence 22 3589999999999999999999999865321 112211111 1 12357889999999999987
Q ss_pred cCCce
Q 016529 333 RPTAK 337 (388)
Q Consensus 333 ~~~~~ 337 (388)
+.|..
T Consensus 218 ~~Gd~ 222 (599)
T 3cb4_D 218 RKGDK 222 (599)
T ss_dssp ESSCE
T ss_pred ecCCE
Confidence 76543
No 150
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.80 E-value=1.8e-19 Score=170.75 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=107.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||||++++.+..+. .....++.......+... ...+.+|||||. ..+.. .+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDR-------LRPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCC--GGGTT-------TGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCc--hhhhH-------HHHH
Confidence 4469999999999999999999977653 344555555544444433 345669999995 33322 2445
Q ss_pred hhccccEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-------------HHHHHhhhcCC
Q 016529 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (388)
++..+|++++|+|++++.. .....|...+.....+.|+++|+||+|+....... .....+....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 6889999999999987542 22222333333322479999999999996532111 11112222234
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
..+++++||++|.|+++++++|.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 458999999999999999999988664
No 151
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=4.3e-19 Score=179.65 Aligned_cols=200 Identities=24% Similarity=0.280 Sum_probs=125.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec--------C------CCCceEEeEEEE--E---eCCCeeEEEEeCCCCc
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--------N------KPQTTRHRILGI--C---SGPEYQMILYDTPGII 174 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~--------~------~~~~t~~~~~~~--~---~~~~~~~~liDtpG~~ 174 (388)
+..+|+|+|++|+|||||+++|++....... + ..+.|....... + ......++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3458999999999999999999753211100 0 122222211111 1 1224689999999964
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhc
Q 016529 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 254 (388)
+ +. ..+..++..+|++|+|+|++++........+..... .+.|+++|+||+|+..... ......+...
T Consensus 85 d--F~-------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~~-~~v~~el~~~ 152 (600)
T 2ywe_A 85 D--FS-------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSADV-DRVKKQIEEV 152 (600)
T ss_dssp G--GH-------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCCH-HHHHHHHHHT
T ss_pred h--HH-------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccCH-HHHHHHHHHh
Confidence 3 22 234455789999999999998876555444444333 6799999999999976432 2223333333
Q ss_pred CCC--ceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHH-hhcCCCCCceeEEEEEEEE
Q 016529 255 TDV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSYK 331 (388)
Q Consensus 255 ~~~--~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~-~~~~~~vp~s~~v~~~~~~ 331 (388)
.+. .+++++||++|.|+++|+++|.+.++.+.... +.|.+.. ++ ..+.+..|..+.+++..|.
T Consensus 153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~------~~pl~~l--------V~~~~~d~~~G~v~~~rV~sG~ 218 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDP------QKPLKAL--------IFDSYYDPYRGAVAFVRIFDGE 218 (600)
T ss_dssp SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCT------TSCCEEE--------EEEEEEETTTEEEEEEEEEESE
T ss_pred hCCCcccEEEEEeecCCCchHHHHHHHHhcccccccc------cCCccee--------EEEEeecccceEEEEEEEEeCE
Confidence 332 35899999999999999999999998653211 1111100 01 1235667888899999998
Q ss_pred ecCCceEE
Q 016529 332 TRPTAKDF 339 (388)
Q Consensus 332 ~~~~~~~~ 339 (388)
.+.|..+.
T Consensus 219 l~~Gd~I~ 226 (600)
T 2ywe_A 219 VKPGDKIM 226 (600)
T ss_dssp ECTTCEEE
T ss_pred EecCCEEE
Confidence 88765443
No 152
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2.8e-20 Score=189.28 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=88.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec------------------------------CCCCceEEeEEEEEeCCCe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+|+|++....+.. ..+++|.+.....+...+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4568999999999999999999754322111 1346677666666777778
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-------chHHHHHHHhcccCCCCCC-EEEEEeC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~l~~~~~~~~~~~p-iilV~NK 235 (388)
.+.||||||+.. +. ..+...+..+|++|+|+|++++. ..+.......+.. .+.| +|+|+||
T Consensus 256 ~i~iiDTPGh~~--f~-------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRD--FI-------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSE--EE-------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEEC
T ss_pred EEEEEECCChHH--HH-------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999643 21 12334577899999999998742 4444444444444 4565 9999999
Q ss_pred CCCCC--hhhHhHHHHHhhh----cCCC----ceEEEecCCCCCCHH--------------HHHHHHHHhCC
Q 016529 236 KDLIK--PGEIAKKLEWYEK----FTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLP 283 (388)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~~----~~~~----~~v~~vSA~~g~gi~--------------eL~~~i~~~l~ 283 (388)
+|+.. ..........+.. ..++ .+++++||++|.||. .|++.|...++
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99975 3322222222221 1222 479999999999998 79999888765
No 153
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=157.39 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=107.1
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCC--CceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKN 188 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~ 188 (388)
.+.++|+|+|.+|||||||+|+|++..+. .+..+ ++|.......+...+..+.+|||||+..... ......+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 35569999999999999999999998874 33333 5667666677777888999999999864321 1223345555
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCC--CCCCEEEEEeCCCCCChhhHh--------HHHHHhhhcCCCc
Q 016529 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIA--------KKLEWYEKFTDVD 258 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~--~~~piilV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~ 258 (388)
+..++..+|++|+|+|+++.......++..+...+. ...|+++|+||+|+.....+. ...........
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-- 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-- 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--
Confidence 556677899999999997544433333333322111 346999999999997654433 12223333332
Q ss_pred eEEEecCCCC-----CCHHHHHHHHHHhCCC
Q 016529 259 EVIPVSAKYG-----HGVEDIRDWILTKLPL 284 (388)
Q Consensus 259 ~v~~vSA~~g-----~gi~eL~~~i~~~l~~ 284 (388)
.++.+++..+ .|+.+|++.+.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 4566666543 6899999998887754
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=4.2e-18 Score=166.53 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=107.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee--ecCCCCceEEeEEEEEeC------------------C-----CeeEEEE
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG------------------P-----EYQMILY 168 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~~~~~------------------~-----~~~~~li 168 (388)
...+|+++|++|+|||||+++|++..... ....++.|.......... . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34589999999999999999999754221 122233343221111100 0 1679999
Q ss_pred eCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--
Q 016529 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-- 245 (388)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-- 245 (388)
||||+ .. +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+.+.....
T Consensus 89 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGH--EA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSH--HH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCCh--HH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHH
Confidence 99994 33 2344555677899999999999875 44443333333321 336899999999998765322
Q ss_pred --HHHHHhhhc-CCCceEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 016529 246 --KKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 246 --~~~~~~~~~-~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
+...++... ....+++++||++|.|+++|+++|.+.++.+.
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 222332221 13458999999999999999999999887543
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=8.3e-20 Score=182.23 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=100.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+|+|++.... .....++.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3459999999999999999999754111 0122345666666666777889
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-------CchHHHHHHHhcccCCCCCCEEEEEeCC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~l~~~~~~~~~~~piilV~NK~ 236 (388)
.+.||||||+. . +...+..++..+|++|+|+|++++ ...+..+....+... ...|+|+|+||+
T Consensus 112 ~~~iiDTPG~~--~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHR--D-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCG--G-------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECG
T ss_pred eEEEEECCCcH--H-------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECc
Confidence 99999999963 2 234455668899999999999986 234444444444431 235799999999
Q ss_pred CCCCh--hhHhHHHHHh----hhcC---CCceEEEecCCCCCCHHH
Q 016529 237 DLIKP--GEIAKKLEWY----EKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 237 Dl~~~--~~~~~~~~~~----~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
|+.+. .........+ .... ...+++++||++|.|+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99862 2222222222 2111 135899999999999975
No 156
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=2.1e-18 Score=178.86 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=143.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCC-------eeEEEEe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPE-------YQMILYD 169 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~-------~~~~liD 169 (388)
+..+|+|+|++|+|||||+++|+...... ..+ ..+.|.......+.+.+ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45699999999999999999997431100 011 22334333333344444 8899999
Q ss_pred CCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhH
Q 016529 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAK 246 (388)
Q Consensus 170 tpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~ 246 (388)
|||+.+ + ...+..+++.+|++|+|+|++++.......++..... .+.|+++|+||+|+..... ...
T Consensus 89 TPG~~d--f-------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~~~~~~~~~ 157 (704)
T 2rdo_7 89 TPGHVD--F-------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGANFLKVVNQ 157 (704)
T ss_pred CCCccc--h-------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccccHHHHHHH
Confidence 999532 2 2334556789999999999998876655555555544 6799999999999864321 111
Q ss_pred HHHHhh--------------------------------------------------------------------------
Q 016529 247 KLEWYE-------------------------------------------------------------------------- 252 (388)
Q Consensus 247 ~~~~~~-------------------------------------------------------------------------- 252 (388)
+...+.
T Consensus 158 l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~ 237 (704)
T 2rdo_7 158 IKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKY 237 (704)
T ss_pred HHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 100000
Q ss_pred -------------------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccC---C--------cchHHH
Q 016529 253 -------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVS---E--------HPERFF 302 (388)
Q Consensus 253 -------------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~---~--------~~~~~~ 302 (388)
....+.|++..||++|.|++.|++.|.+.+|.+....+..... + .+....
T Consensus 238 l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 317 (704)
T 2rdo_7 238 LGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPF 317 (704)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCce
Confidence 0012357999999999999999999999998753311000000 0 000000
Q ss_pred HHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhH
Q 016529 303 VGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (388)
Q Consensus 303 ~~eiire~i~~-~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i 363 (388)
.. .++. ...+..|..+++++.+|+.+.|..+++......++-++.+.+.|.....+
T Consensus 318 ~~-----~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 374 (704)
T 2rdo_7 318 SA-----LAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEI 374 (704)
T ss_pred EE-----EEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEc
Confidence 00 0111 12567788999999999998886666543333344455555555544433
No 157
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=4.9e-18 Score=165.90 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=99.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee--ecCCCCceEEeEEE---EEe--------C----C--------CeeEEEE
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS--------G----P--------EYQMILY 168 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~---~~~--------~----~--------~~~~~li 168 (388)
...+|+++|++++|||||+++|++..... ....++.|...... ... . . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 44689999999999999999999754221 11223334322111 100 0 1 1679999
Q ss_pred eCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh----
Q 016529 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---- 243 (388)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---- 243 (388)
||||+ .. +...+...+..+|++|+|+|++++. ..+.......+... ...|+++|+||+|+.+...
T Consensus 87 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGH--ET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSH--HH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCH--HH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHH
Confidence 99994 33 2344556677899999999999875 44443333333331 2358999999999986543
Q ss_pred HhHHHHHhhhc-CCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016529 244 IAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 244 ~~~~~~~~~~~-~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
..+..+++... ....+++++||++|.|+++|+++|.+.++.+
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 22233333321 2345899999999999999999999988754
No 158
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.77 E-value=1.2e-19 Score=183.02 Aligned_cols=232 Identities=16% Similarity=0.109 Sum_probs=147.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee---------------eec------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~---------------~~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG 172 (388)
|..+|+|+|+.++|||||..+|+...-. .+. ...+.|.......+.+++..++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4558999999999999999999622110 011 1122333333445678899999999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHH
Q 016529 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (388)
+.+.. ..+.+.++-+|++|+|+|+..+.+.+...+++.+.. .+.|+++++||+|....+. +.++.+
T Consensus 110 HvDF~---------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~ad~~~~~~~i~~ 178 (548)
T 3vqt_A 110 HQDFS---------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREALHPLDVMADIEQ 178 (548)
T ss_dssp GGGCS---------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCCCHHHHHHHHHH
T ss_pred cHHHH---------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhcchhHhhhhhhh
Confidence 65432 345566889999999999999999999988888877 7899999999999864321 111111
Q ss_pred Hhh-----------------------------------------------------------------------------
Q 016529 250 WYE----------------------------------------------------------------------------- 252 (388)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (388)
.+.
T Consensus 179 ~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 179 HLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp HHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCC
T ss_pred hcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCch
Confidence 110
Q ss_pred -----hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccC---CcchHHHHHHHHHHHHHh-hcCCCCCcee
Q 016529 253 -----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVS---EHPERFFVGEIIREKIFM-QYRNEVPYAC 323 (388)
Q Consensus 253 -----~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~---~~~~~~~~~eiire~i~~-~~~~~vp~s~ 323 (388)
......|++..||++|.||+.|++.|.+.+|.+.......... +.+.. +-++ ++.. ...+.+|+.+
T Consensus 259 ~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~---a~vf--Ki~~~~~~~~~Grla 333 (548)
T 3vqt_A 259 DEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFT---GVVF--KIQANMDKAHRDRMA 333 (548)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCE---EEEE--EEECC-------CEE
T ss_pred hHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCce---EEEE--EEEccCCcCCCCeEE
Confidence 0123458999999999999999999999998753211110000 01100 0000 0000 1125678899
Q ss_pred EEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCCh
Q 016529 324 QVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGK 361 (388)
Q Consensus 324 ~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~ 361 (388)
++++.+|+.+.|..+++......+|-++.+++.|..-.
T Consensus 334 ~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~ 371 (548)
T 3vqt_A 334 FLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRT 371 (548)
T ss_dssp EEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCC
T ss_pred EEEEecceecCCCEEEeeccccccccchhhhhcccccc
Confidence 99999999988876665444445666677766665543
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.77 E-value=1.8e-18 Score=166.32 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=105.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|++|+|||||+++|+ ..+.|.+.....+...+..+.+|||||+. .+ ...+...+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~--~f-------~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYP--KT-------LKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTT--TC-------HHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChH--HH-------HHHHHHHHHHC
Confidence 89999999999999999998 12233333344566677899999999953 32 23344557899
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCE-EEEEe-CCCCCChhhHhHHH----HHhhhcC-CCceEEE--ecCCC
Q 016529 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKL----EWYEKFT-DVDEVIP--VSAKY 267 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pi-ilV~N-K~Dl~~~~~~~~~~----~~~~~~~-~~~~v~~--vSA~~ 267 (388)
|++|+|+| +.+...+...+...+.. .+.|. ++|+| |+|+ +........ +++.... ...++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 99999999 77776666666555555 56787 89999 9999 654433222 2222211 2358999 99999
Q ss_pred ---CCCHHHHHHHHHHhCCC
Q 016529 268 ---GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 ---g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++|++.|.+.++.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhccc
Confidence 99999999999987753
No 160
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=5.4e-20 Score=182.20 Aligned_cols=149 Identities=20% Similarity=0.262 Sum_probs=98.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc--ee----------------------ee------cCCCCceEEeEEEEEeCCCe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IV------TNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~--~~----------------------~~------~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+|+|++.. +. .+ +...+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34589999999999999999998641 10 00 01245555555556677788
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCch-------HHHHHHHhcccCCCCCC-EEEEEeC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNK 235 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~-------~~~~l~~~~~~~~~~~p-iilV~NK 235 (388)
.+.||||||+. . +...+..++..+|++|+|+|++++... +.......+.. .+.| +++|+||
T Consensus 86 ~~~iiDtPGh~--~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHR--D-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCT--T-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred eEEEEECCCcH--H-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEc
Confidence 99999999953 2 334456678899999999999865321 33333333333 4565 8999999
Q ss_pred CCCCC--hhhHhH----HHHHhhhcCC---CceEEEecCCCCCCHHH
Q 016529 236 KDLIK--PGEIAK----KLEWYEKFTD---VDEVIPVSAKYGHGVED 273 (388)
Q Consensus 236 ~Dl~~--~~~~~~----~~~~~~~~~~---~~~v~~vSA~~g~gi~e 273 (388)
+|+.+ ...... ...++..... ..+++++||++|.|+.+
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99973 222222 2222222221 25899999999999863
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=9.4e-18 Score=148.35 Aligned_cols=167 Identities=23% Similarity=0.221 Sum_probs=102.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh-----hhhhHHHHH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMK 187 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-----~~~~~~~~~ 187 (388)
+..+|+++|++|||||||+|+|++.. ...+.+.++++.......+ .+ .+.+|||||+..... ..+.. ...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~--~~-~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV--AD-GKRLVDLPGYGYAEVPEEMKRKWQR-ALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE--ET-TEEEEECCCCC------CCHHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe--cC-CEEEEECcCCcccccCHHHHHHHHH-HHH
Confidence 44589999999999999999999987 3334556666654322222 22 688999999743110 01111 111
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH----hHHHHHhhhcCCCceEEEe
Q 016529 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKFTDVDEVIPV 263 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~v~~v 263 (388)
.+......++.+++|+|++.+.......+..++.. .+.|+++|+||+|+.+..+. ......+........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 22222357899999999988765544444444444 67899999999999875432 2233333333334578999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCC
Q 016529 264 SAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
||+++.|+++++++|.+.+..++
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC---
T ss_pred eecCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999998876543
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=1.1e-18 Score=170.38 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=113.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC--------ceeee--c------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~--------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
...+|+++|++|+|||||+++|++. .+... . ...+.|.+.....+...+..+.+|||||+. .
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~--~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--D 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG--G
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH--H
Confidence 4468999999999999999999873 11100 0 123445554455566677899999999953 3
Q ss_pred hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCCh-hhHh----HHHHHh
Q 016529 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIA----KKLEWY 251 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~-~~~~----~~~~~~ 251 (388)
+ ...+..++..+|++|+|+|++++.......++..+.. .+.| +++|+||+|+... .... +...++
T Consensus 88 f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 Y-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp G-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 2 2344556789999999999998876666666665555 5678 8999999999852 2222 222333
Q ss_pred hhcC---CCceEEEecCCCCCC------------------HHHHHHHHHHhCCCCC
Q 016529 252 EKFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLGP 286 (388)
Q Consensus 252 ~~~~---~~~~v~~vSA~~g~g------------------i~eL~~~i~~~l~~~~ 286 (388)
.... ...+++++||++|.| +.+|++.|.+.++.+.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~ 214 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence 3222 135899999999987 8899999999887543
No 163
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=2.4e-18 Score=178.25 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=80.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----e------cC------CCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+|+|++|+|||||+++|+...... + .+ ..+.|.......+.+.+..+++|||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD- 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT-
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc-
Confidence 45699999999999999999998321110 0 00 223444444445566788999999999633
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016529 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
+ ...+..++..+|++|+|+|++++.......++..+.. .+.|+++|+||+|+...
T Consensus 90 -f-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 -F-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp -C-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred -h-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 2 2234556788999999999998876666555555554 68999999999999753
No 164
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=6.2e-18 Score=169.76 Aligned_cols=208 Identities=20% Similarity=0.165 Sum_probs=132.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee---------------ec------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG 172 (388)
+..+|+|+|++|+|||||+++|++....+ +. ...+.|.......+.+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45689999999999999999998532111 00 1122232222334566788999999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHH
Q 016529 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (388)
+. .+. ..+..++..+|++|+|+|++++.......++..+.. .+.|+++|+||+|+..... ...+..
T Consensus 92 ~~--df~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~~~~~~~~~i~~ 160 (529)
T 2h5e_A 92 HE--DFS-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIRDPMELLDEVEN 160 (529)
T ss_dssp ST--TCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCSCHHHHHHHHHH
T ss_pred Ch--hHH-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccccHHHHHHHHHH
Confidence 63 322 234456889999999999999887777777766665 6899999999999975322 111111
Q ss_pred Hhh-----------------------------------------------------------------------------
Q 016529 250 WYE----------------------------------------------------------------------------- 252 (388)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (388)
.+.
T Consensus 161 ~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~ 240 (529)
T 2h5e_A 161 ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNE 240 (529)
T ss_dssp HHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhh
Confidence 100
Q ss_pred ------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCC-CccC--CcchHHHHHHHHHHHHHhh---c-CCCC
Q 016529 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-DIVS--EHPERFFVGEIIREKIFMQ---Y-RNEV 319 (388)
Q Consensus 253 ------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~-~~~~--~~~~~~~~~eiire~i~~~---~-~~~v 319 (388)
......|++..||.+|.||+.|++.|.+.+|.+...... .... +.+- .. .+|.. + .+..
T Consensus 241 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~---~~-----~vfKi~~~~d~~~~ 312 (529)
T 2h5e_A 241 FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKF---TG-----FVFKIQANMDPKHR 312 (529)
T ss_dssp CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSC---EE-----EEEEECSSCCSSSS
T ss_pred hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCe---EE-----EEEEEeeccCcCCC
Confidence 001234899999999999999999999999865321100 0000 0110 00 01111 1 2347
Q ss_pred CceeEEEEEEEEecCCceEEE
Q 016529 320 PYACQVNVVSYKTRPTAKDFI 340 (388)
Q Consensus 320 p~s~~v~~~~~~~~~~~~~~i 340 (388)
|..+++++.+|+.+.|..+++
T Consensus 313 G~i~~~RV~sG~l~~g~~v~~ 333 (529)
T 2h5e_A 313 DRVAFMRVVSGKYEKGMKLRQ 333 (529)
T ss_dssp CCCEEEEEEESCEETTCEEEE
T ss_pred ceEEEEEEecCeEcCCCEEEE
Confidence 888999999999887765554
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.76 E-value=3.4e-18 Score=173.51 Aligned_cols=205 Identities=19% Similarity=0.211 Sum_probs=125.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCC-CceEEeEEEEEe------------------CCCeeEEEEeCCCCc
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICS------------------GPEYQMILYDTPGII 174 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-~~t~~~~~~~~~------------------~~~~~~~liDtpG~~ 174 (388)
|.++|+++|++|+|||||+++|++..+.. ..+ +.|.+.....+. .....+.||||||+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh- 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH- 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT-
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc-
Confidence 67899999999999999999999765431 111 222221111111 11225999999995
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh------------
Q 016529 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------ 242 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~------------ 242 (388)
..+..+ ...++..+|++|+|+|++++........+..+.. .+.|+++|+||+|+....
T Consensus 81 -e~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 81 -EAFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp -SCCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred -HHHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHH
Confidence 344332 2345788999999999999887666666666655 689999999999996421
Q ss_pred -----hH--------hHHHHHhhh-------------cCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCC
Q 016529 243 -----EI--------AKKLEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE 296 (388)
Q Consensus 243 -----~~--------~~~~~~~~~-------------~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~ 296 (388)
.. .+....+.. .....+++++||++|.|+++|+++|...++..... ....-.+
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~-~l~~~~~ 229 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE-QLKIEED 229 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG-GGEECTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchh-hhccccC
Confidence 00 011111111 12345899999999999999999999876421100 0000001
Q ss_pred cchHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCceEEE
Q 016529 297 HPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDFI 340 (388)
Q Consensus 297 ~~~~~~~~eiire~i~~-~~~~~vp~s~~v~~~~~~~~~~~~~~i 340 (388)
.|.+. .++. ...+..|..+.+.+..|..+.|....+
T Consensus 230 ~p~~~--------~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 230 SPARG--------TILEVKEETGLGMTIDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp SBCEE--------EEEEEEEETTEEEEEEEEEEESEEETTCEEEE
T ss_pred CCcee--------EEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEE
Confidence 11110 0011 124556777777888888777655443
No 166
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.76 E-value=1.4e-18 Score=175.53 Aligned_cols=160 Identities=21% Similarity=0.261 Sum_probs=99.5
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE-E------EE----eCCCeeEEEEeCCCCcchhhhhh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-G------IC----SGPEYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~-~------~~----~~~~~~~~liDtpG~~~~~~~~~ 181 (388)
.+..+|+++|.+|||||||+|+|++.++. .....+...... . .+ ...+..+.+|||||. ..+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~--e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ--EIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC--CTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH--HHHHHH
Confidence 35679999999999999999999998764 111111111111 1 11 123578999999994 444444
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCce
Q 016529 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDE 259 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 259 (388)
... +++.+|++|+|+|+++. .....|+ ..+.....+.|+++|+||+|+.....+ .......... + .+
T Consensus 115 ~~~-------~l~~~d~ii~V~D~s~~-~~~~~~~-~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~ 183 (535)
T 3dpu_A 115 HQF-------FMTRSSVYMLLLDSRTD-SNKHYWL-RHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI-E-NR 183 (535)
T ss_dssp CHH-------HHHSSEEEEEEECGGGG-GGHHHHH-HHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-T-TC
T ss_pred HHH-------HccCCcEEEEEEeCCCc-hhHHHHH-HHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc-C-Cc
Confidence 332 36789999999999864 3444443 333333356999999999999764432 2223333332 2 47
Q ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 016529 260 VIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 260 v~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (388)
++++||++|.||++|+++|.+.+...+.
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred eEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999998877654
No 167
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=160.78 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=99.5
Q ss_pred CCCccEEEEEeCC---------CCChhHHHHHHhCC---ceeeecCCCCce--EEeEE----------------EEEeCC
Q 016529 112 NHKSGYVAVLGKP---------NVGKSTLANQMIGQ---KLSIVTNKPQTT--RHRIL----------------GICSGP 161 (388)
Q Consensus 112 ~~~~~~v~ivG~~---------~~GKSSLln~l~~~---~~~~~~~~~~~t--~~~~~----------------~~~~~~ 161 (388)
..+..+|+++|.+ |||||||+|+|++. .+. .....++ .+... ..+...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~--~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFH--LDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCC--SCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccc--cccCCcccccccceeEeecccccccccccccccCCc
Confidence 3456799999999 99999999999984 332 2222222 11000 002234
Q ss_pred CeeEEEEe------CCCCcchhhhhhhHHHHH--------hHHhhhc---------------------cccEEEEEEeCC
Q 016529 162 EYQMILYD------TPGIIEKKIHMLDSMMMK--------NVRSAGI---------------------NADCIVVLVDAC 206 (388)
Q Consensus 162 ~~~~~liD------tpG~~~~~~~~~~~~~~~--------~~~~~~~---------------------~ad~ii~VvD~~ 206 (388)
...+.+|| |||........+...+.. .+..++. ++|++|+|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 46788888 666533221111111000 0111222 699999999998
Q ss_pred CC--C--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHh
Q 016529 207 KA--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 207 ~~--~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
++ . .....|+..+... ...+.|+++|+||+|+.....+.....+.... ...+++++||++|.|+++++++|.+.
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS-SSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc-CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 75 2 3344444443322 12579999999999998765554433333332 23589999999999999999999876
Q ss_pred C
Q 016529 282 L 282 (388)
Q Consensus 282 l 282 (388)
+
T Consensus 253 l 253 (255)
T 3c5h_A 253 I 253 (255)
T ss_dssp H
T ss_pred h
Confidence 4
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=1e-17 Score=163.03 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=112.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCce-------ee--------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKL-------SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~-------~~--------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
..+|+++|++|+|||||+++|++... .. .....+.|.......+...+..+.||||||+ ..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~--~~-- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH--AD-- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH--HH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh--HH--
Confidence 35899999999999999999986411 00 0113445555544456667789999999994 33
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCC-hhhHh----HHHHHhhh
Q 016529 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIK-PGEIA----KKLEWYEK 253 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~-~~~~~----~~~~~~~~ 253 (388)
+...+..++..+|++|+|+|++++...+....+..+.. .+.| +++|+||+|+.. ..... +..+.+..
T Consensus 79 -----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 79 -----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp -----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 23445566889999999999998876665555555554 5788 789999999985 22211 22233332
Q ss_pred cC---CCceEEEecCCCCCC----------HHHHHHHHHHhCCCC
Q 016529 254 FT---DVDEVIPVSAKYGHG----------VEDIRDWILTKLPLG 285 (388)
Q Consensus 254 ~~---~~~~v~~vSA~~g~g----------i~eL~~~i~~~l~~~ 285 (388)
.. ...+++++||++|.| +.+|++.|.+.++.+
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 22 135899999999764 899999999988754
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.75 E-value=7.6e-18 Score=147.97 Aligned_cols=157 Identities=22% Similarity=0.241 Sum_probs=100.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|++|||||||+++|.+..+.... .+..+.....+.+. .....+.+|||||. ..+..+ +..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~-------~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRI-------TSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCC-------CHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHH
Confidence 358999999999999999999998764322 22222222233333 33357889999994 333322 2233
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+..+|++++|+|.++.. .....|+.........+.|+++|+||+|+...... ......... .+ ..++.+||+++
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~-~~~~d~Sal~~ 152 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NN-LSFIETSALDS 152 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cC-CeEEEEeCCCC
Confidence 67899999999998643 22223333222211256899999999999643221 222222222 23 47899999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016529 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|+++++++|.+.+.
T Consensus 153 ~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 153 TNVEEAFKNILTEIY 167 (199)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=164.75 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=98.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee----------cCCC----------------------CceEEeEEEEEeCCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV----------TNKP----------------------QTTRHRILGICSGPE 162 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~----------~~~~----------------------~~t~~~~~~~~~~~~ 162 (388)
..+|+++|++|+|||||+++|++....+. +..+ +.|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 35899999999999999999986542111 1112 223333344456677
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCC-CEEEEEeCCCCCCh
Q 016529 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP 241 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~-piilV~NK~Dl~~~ 241 (388)
..+.+|||||+ ..+. ..+..++..+|++|+|+|++++.......+...+.. .+. |+++|+||+|+.+.
T Consensus 104 ~~~~iiDtpGh--~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 104 RKFIIADTPGH--EQYT-------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEEEEEECCCS--GGGH-------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTS
T ss_pred ceEEEEECCCh--HHHH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcc
Confidence 89999999995 3332 233445789999999999998876655555544444 344 59999999999862
Q ss_pred --hhHh----HHHHHhhhcC---CCceEEEecCCCCCCHHH
Q 016529 242 --GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 242 --~~~~----~~~~~~~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
.... +...++.... ...+++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 2222 2222223222 235899999999999987
No 171
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.74 E-value=9.1e-18 Score=157.11 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=102.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhh--hhHHHHHhHHhhhc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM--LDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~~~ 194 (388)
||+++|.+|||||||++++.+..........+.|.......+ ....++.+|||||. +.+.. + ....+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQ--Erf~~~~l------~~~~yyr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQ--LNYFEPSY------DSERLFK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSC--SSSCCCSH------HHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCc--hhccchhh------hhhhhcc
Confidence 589999999999999999876543221112222221111122 23478999999994 44421 1 1234588
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcc---cCCCCCCEEEEEeCCCCCChhh-------HhH-HHHHhhhc---CCCceE
Q 016529 195 NADCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPGE-------IAK-KLEWYEKF---TDVDEV 260 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~---~~~~~~piilV~NK~Dl~~~~~-------~~~-~~~~~~~~---~~~~~v 260 (388)
+++++|+|+|+++.......+|..++. ...++.|+++|+||+|+..... +.. ..+.+.+. ....++
T Consensus 72 ~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 72 SVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF 151 (331)
T ss_dssp TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence 999999999999875444455543332 2236799999999999986532 111 11222232 123589
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
++|||++ .+|.+.|..|++.+.+
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSST
T ss_pred EEeccCC-CcHHHHHHHHHHHHHh
Confidence 9999998 5999999999887754
No 172
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=7.5e-19 Score=168.56 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=114.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCceEEe-------E----------EEE-------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------I----------LGI------------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t~~~-------~----------~~~------------- 157 (388)
+.++|+|+|.+|+|||||+++|. |.++..+...+..+... . ...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999985 44444444444333200 0 000
Q ss_pred ---------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC
Q 016529 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (388)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p 228 (388)
+...+..+.||||||+..... ..+..+|++++|+|+...... ..+... ....|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~------------~~~~~aD~vl~V~d~~~~~~~--~~l~~~----~~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV------------AVANMVDTFVLLTLARTGDQL--QGIKKG----VLELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH------------HHHTTCSEEEEEEESSTTCTT--TTCCTT----SGGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH------------HHHHhCCEEEEEECCCCCccH--HHHHHh----HhhcC
Confidence 123567899999999754211 124789999999998754322 111111 13469
Q ss_pred EEEEEeCCCCCChhhHhHHHHHhhh----cC----C-CceEEEecCCCCCCHHHHHHHHHHhCCC--CCCCCCCCccCCc
Q 016529 229 ILLVLNKKDLIKPGEIAKKLEWYEK----FT----D-VDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKDIVSEH 297 (388)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~~----~~----~-~~~v~~vSA~~g~gi~eL~~~i~~~l~~--~~~~~~~~~~~~~ 297 (388)
+++|+||+|+............+.. .. . ..+++++||++|.|+++|+++|.+.++. .+..++. .. ..
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~-~r-~~ 297 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA-RR-RD 297 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH-HH-HH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH-HH-HH
Confidence 9999999999765443322222221 11 1 2579999999999999999999988754 2222222 11 12
Q ss_pred chHHHHHHHHHHHHHhhcCC
Q 016529 298 PERFFVGEIIREKIFMQYRN 317 (388)
Q Consensus 298 ~~~~~~~eiire~i~~~~~~ 317 (388)
....++.+++|++++..+..
T Consensus 298 ~~~~~~~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 298 QQVDWTWQLVRDAVLDRVWS 317 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 24567788999998876543
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=6.9e-18 Score=174.81 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=81.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+|+|++|+|||||+|+|++....+ +.+ .+++|.......+.+.+..++||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD- 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS-
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc-
Confidence 55699999999999999999998422110 111 234444444455667789999999999643
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016529 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
+. ..+..+++.+|++|+|+|++++.......++..+.. .+.|+++|+||+|+...
T Consensus 88 -f~-------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 -FT-------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -CC-------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred -hH-------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 22 224455778999999999998876666665555555 68999999999999753
No 174
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.72 E-value=1.6e-17 Score=163.49 Aligned_cols=149 Identities=20% Similarity=0.244 Sum_probs=94.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+++|++....+. ....+.|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 445899999999999999999986421110 01345566555556677788
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-------CchHHHHHHHhcccCCCC-CCEEEEEeC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNK 235 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~l~~~~~~~~~~-~piilV~NK 235 (388)
.+.+|||||+. .+ ...+..++..+|++|+|+|++++ ...+.......+.. .+ .|+++|+||
T Consensus 85 ~~~iiDtpG~~--~f-------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHR--DF-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSST--TH-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEEC
T ss_pred EEEEEECCCcH--HH-------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEc
Confidence 99999999953 32 23455668899999999999986 33344444443333 34 468999999
Q ss_pred CCCCCh----hhH----hHHHHHhhhcC---CCceEEEecCCCCCCHHH
Q 016529 236 KDLIKP----GEI----AKKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 236 ~Dl~~~----~~~----~~~~~~~~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
+|+.+. ... .+....+.... ...+++++||++|.|+.+
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 999862 111 22223332222 125899999999999974
No 175
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.72 E-value=8.2e-19 Score=167.69 Aligned_cols=186 Identities=21% Similarity=0.328 Sum_probs=112.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCceEE--------------------eEE---------EE--
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH--------------------RIL---------GI-- 157 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~t~~--------------------~~~---------~~-- 157 (388)
.+.|+|+|+||||||||+|+|++ .++.+....|.+... .+. +.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 56899999999999999999985 334444443332210 000 00
Q ss_pred --------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCE
Q 016529 158 --------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (388)
Q Consensus 158 --------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pi 229 (388)
+...+..+.++||||+.... . .....+|++++|+|++.+... ..+...+ ...|.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ 215 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-F-----------AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMAD 215 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-H-----------HHHTTCSEEEEEECCC------------------CCSCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-h-----------hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCC
Confidence 12356789999999975321 1 125689999999999765321 1111111 24588
Q ss_pred EEEEeCCCCCChhhHhH----HHHHhhhcC-----CCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCc---
Q 016529 230 LLVLNKKDLIKPGEIAK----KLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH--- 297 (388)
Q Consensus 230 ilV~NK~Dl~~~~~~~~----~~~~~~~~~-----~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~--- 297 (388)
++|+||+|+.+...... ....+.... ...+++++||++|.|+++|+++|.+.++. .++...+++.
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~ 292 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLASGELTAKRRK 292 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHHSHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhCchHHHHHHH
Confidence 99999999975432221 111111111 13478999999999999999999987643 2233333333
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCc
Q 016529 298 PERFFVGEIIREKIFMQYRNEVPY 321 (388)
Q Consensus 298 ~~~~~~~eiire~i~~~~~~~vp~ 321 (388)
..++++.++++++++..+..++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 293 QQKVWMWNLIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcch
Confidence 456788899999998876666553
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.72 E-value=1.3e-17 Score=172.00 Aligned_cols=200 Identities=21% Similarity=0.137 Sum_probs=131.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----e------cC------CCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+|+|++|+|||||+++|++..... + .+ ..+.|.......+.+.+..+++|||||+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~-- 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG-- 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG--
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc--
Confidence 34589999999999999999998432210 0 00 11233333444455667899999999953
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhh-
Q 016529 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYE- 252 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~- 252 (388)
.+. ..+..+++.+|++++|+|++++.......++..+.. .+.|+++|+||+|+. ... ...+...+.
T Consensus 86 ~f~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~ 155 (665)
T 2dy1_A 86 DFV-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG-GDYYALLEDLRSTLGP 155 (665)
T ss_dssp GGH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC-CCHHHHHHHHHHHHCS
T ss_pred chH-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh-hhHHHHHHHHHHHhCC
Confidence 322 234556789999999999998887776666666655 679999999999987 321 111111111
Q ss_pred --------------------------------------------------------------------------------
Q 016529 253 -------------------------------------------------------------------------------- 252 (388)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (388)
T Consensus 156 ~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~ 235 (665)
T 2dy1_A 156 ILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALE 235 (665)
T ss_dssp EEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHH
T ss_pred cceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHH
Confidence
Q ss_pred -------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHh-hcCCCCCceeE
Q 016529 253 -------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQ 324 (388)
Q Consensus 253 -------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~~vp~s~~ 324 (388)
......|++++||++|.|+++|+++|.+.+|.+....+ +.|... .++. ...+..|..+.
T Consensus 236 ~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~~-----~~p~~~--------~V~k~~~d~~~G~~~~ 302 (665)
T 2dy1_A 236 KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFG-----DGPPLA--------KVFKVQVDPFMGQVAY 302 (665)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHHC-----SCSCEE--------EEEEEEEETTTEEEEE
T ss_pred HHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccCC-----CCCeEE--------EEEEEEEcCCCCeEEE
Confidence 00123589999999999999999999999986421000 011000 0111 12456788899
Q ss_pred EEEEEEEecCCceE
Q 016529 325 VNVVSYKTRPTAKD 338 (388)
Q Consensus 325 v~~~~~~~~~~~~~ 338 (388)
+++.+|..+.|..+
T Consensus 303 ~rV~sG~l~~g~~v 316 (665)
T 2dy1_A 303 LRLYRGRLKPGDSL 316 (665)
T ss_dssp EEEEESEECTTEEE
T ss_pred EEEcccEEecCCEE
Confidence 99999998877544
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=1.2e-17 Score=173.15 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=108.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE---------EEEEe------------------CCC----
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---------LGICS------------------GPE---- 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~---------~~~~~------------------~~~---- 162 (388)
...+|+|+|.+|+|||||+|+|+|.++..++..|+|..... ...+. ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 44589999999999999999999998776666666621000 00000 000
Q ss_pred --------------------------eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHH-
Q 016529 163 --------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI- 215 (388)
Q Consensus 163 --------------------------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~- 215 (388)
..+.+|||||+.... . ....+..++..+|++|||+|++++.......
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 369999999974321 1 2344566788999999999998876544433
Q ss_pred HHHhcccCCCCCCEEEEEeCCCCCChh--------hHh----HHH----HHhhhcC-------CCceEEEecCC------
Q 016529 216 LEEGVGDHKDKLPILLVLNKKDLIKPG--------EIA----KKL----EWYEKFT-------DVDEVIPVSAK------ 266 (388)
Q Consensus 216 l~~~~~~~~~~~piilV~NK~Dl~~~~--------~~~----~~~----~~~~~~~-------~~~~v~~vSA~------ 266 (388)
+...+.. .+.|+++|+||+|+.... ... ... ..+.... ...++++|||+
T Consensus 222 l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 222 LENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 3344444 468999999999987543 111 111 1121111 12469999999
Q ss_pred --------CCCCHHHHHHHHHHhCC
Q 016529 267 --------YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 267 --------~g~gi~eL~~~i~~~l~ 283 (388)
+|.|+++++++|.+.+.
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.71 E-value=8.3e-17 Score=170.53 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=109.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCcee----------e-----ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS----------I-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~----------~-----~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
....+|+++|++|+|||||+++|++.... . .....+.|.+.....+...+..+.||||||+ ..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH--ed 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH--AD 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH--HH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh--HH
Confidence 34568999999999999999999864110 0 0112344444333445667789999999994 33
Q ss_pred hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhh-Hh----HHHHHh
Q 016529 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWY 251 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~-~~----~~~~~~ 251 (388)
+...+...+..+|++|+|+|++++...+...++..+.. .+.| +|+|+||+|+.+... .. +....+
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 23445567889999999999998775555555455444 4678 789999999985322 11 222233
Q ss_pred hhcC---CCceEEEecCCCC--------CCHHHHHHHHHHhCCCC
Q 016529 252 EKFT---DVDEVIPVSAKYG--------HGVEDIRDWILTKLPLG 285 (388)
Q Consensus 252 ~~~~---~~~~v~~vSA~~g--------~gi~eL~~~i~~~l~~~ 285 (388)
.... ...+++++||++| .|+.+|++.|.+.++.+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 3222 2358999999999 57999999999988753
No 179
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.71 E-value=5.9e-17 Score=141.49 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=100.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+|+|++|||||||+++|.+..+.. ...+..+.+...+.+...+ ..+.+|||||.. .+..+ +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~--~~~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE--RYRAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC--SSSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCc--chhhh-------hHHH
Confidence 4589999999999999999999887653 2223333333333333333 456789999963 22222 2234
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecCCCC
Q 016529 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+..++++++|+|.++.. .....|+.........+.|+++|+||+|+..... ......... ..+ ..++.+||+++
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-~~~-~~~ld~Sald~ 176 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-KNG-LSFIETSALDS 176 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTT-CEEEECCTTTC
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH-HcC-CEEEEEeCCCC
Confidence 67889999999987643 2222333322221125689999999999864322 122222222 223 47899999999
Q ss_pred CCHHHHHHHHHHhC
Q 016529 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+++++++|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 180
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=3.2e-16 Score=139.32 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=84.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+.++|+++|++|+|||||+++|.+..+... +..+..+. ......+.+|||||+ ..+......+ +..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~--~~~~~~~~~~---~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGH--VKLRYKLSDY---LKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCC--GGGTHHHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCc--HHHHHHHHHH---HHh
Confidence 556999999999999999999998775321 11121111 124578999999996 3333222222 122
Q ss_pred hhccccEEEEEEeCC---CCCchHHHHHHHhccc----CCCCCCEEEEEeCCCCCChhhHhHHH-------HHhhhcCCC
Q 016529 192 AGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKL-------EWYEKFTDV 257 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~---~~~~~~~~~l~~~~~~----~~~~~piilV~NK~Dl~~~~~~~~~~-------~~~~~~~~~ 257 (388)
....+|++|+|+|++ ........++...+.. ...+.|+++|+||+|+.......... ..+.... .
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-~ 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR-K 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH-h
Confidence 234589999999998 3445555666555432 22579999999999998654332211 1111111 1
Q ss_pred ceEEEecCCCCCC
Q 016529 258 DEVIPVSAKYGHG 270 (388)
Q Consensus 258 ~~v~~vSA~~g~g 270 (388)
.+++++||++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 3678999998764
No 181
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.68 E-value=1.7e-17 Score=158.25 Aligned_cols=184 Identities=20% Similarity=0.298 Sum_probs=113.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCceEE--------------------eEEEE----------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH--------------------RILGI---------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t~~--------------------~~~~~---------- 157 (388)
+...|+++|++|+|||||+|+|. +.++.++...++++.. .+...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 44589999999999999999996 4555555555544331 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC
Q 016529 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (388)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p 228 (388)
+...+.++.||||||+.+... .....+|++++|+|++.+.. + ..+.....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------------~~~~~aD~vl~Vvd~~~~~~-----~-~~l~~~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSET------------EVARMVDCFISLQIAGGGDD-----L-QGIKKGLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHH------------HHHTTCSEEEEEECC------------CCCCHHHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHH------------HHHHhCCEEEEEEeCCccHH-----H-HHHHHhhhccc
Confidence 014467899999999754211 12478999999999875421 0 11110002468
Q ss_pred EEEEEeCCCCCChhhHhHHHHHhh----hcCC-----CceEEEecCCCCCCHHHHHHHHHHhCC---CCCCCCCCCccCC
Q 016529 229 ILLVLNKKDLIKPGEIAKKLEWYE----KFTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSE 296 (388)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~----~~~~-----~~~v~~vSA~~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~~ 296 (388)
.++|+||+|+............+. .... ..+++++||++|.|+++|+++|.+.++ .++ .+| +...
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~~-~~~-~~r~- 273 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG-RLQ-QVRQ- 273 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT-HHH-HHHH-
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhCC-hHH-HHHH-
Confidence 899999999987543332222221 1111 347899999999999999999998764 221 222 1111
Q ss_pred cchHHHHHHHHHHHHHhhcCCC
Q 016529 297 HPERFFVGEIIREKIFMQYRNE 318 (388)
Q Consensus 297 ~~~~~~~~eiire~i~~~~~~~ 318 (388)
...+.++.|.+++.++..+..+
T Consensus 274 ~~~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 274 QQSVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 2245677888899888876654
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.67 E-value=3.3e-16 Score=144.48 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=89.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh-
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA- 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~- 192 (388)
+..+|+++|.+|+|||||+|+|++..+..++..+++|.......+...+..+.+|||||+... ..+...+.+.+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~--~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--GYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC--ccchHHHHHHHHHHh
Confidence 456999999999999999999999887666777778777666667777889999999997432 22222222333322
Q ss_pred -hccccEEEEEEeCCC-CCchHHHHHHHhcccC-CC--CCCEEEEEeCCCCCChh
Q 016529 193 -GINADCIVVLVDACK-APERIDEILEEGVGDH-KD--KLPILLVLNKKDLIKPG 242 (388)
Q Consensus 193 -~~~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~-~~--~~piilV~NK~Dl~~~~ 242 (388)
...+|+++||+|++. ........+...+... .. ..|+++|+||+|+..+.
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 347999999988764 3444443444433321 12 26999999999997653
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.67 E-value=8.4e-17 Score=159.65 Aligned_cols=150 Identities=20% Similarity=0.199 Sum_probs=88.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCc--e----------------------eeecC------CCCceEEeEEEEEeCCCee
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQK--L----------------------SIVTN------KPQTTRHRILGICSGPEYQ 164 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~--~----------------------~~~~~------~~~~t~~~~~~~~~~~~~~ 164 (388)
..+|+++|++|+|||||+++|++.. + ..+.+ ..+.|.+.....+...+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 4589999999999999999997421 1 00111 2344544444456667789
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCc-------hHHHHHHHhcccCCCCCC-EEEEEeCC
Q 016529 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~-------~~~~~l~~~~~~~~~~~p-iilV~NK~ 236 (388)
+.||||||+ ..+ ...+...+..+|++|+|+|++++.. .+.......+.. .+.| +++|+||+
T Consensus 123 ~~iiDtPGh--~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~ 191 (467)
T 1r5b_A 123 FSLLDAPGH--KGY-------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKM 191 (467)
T ss_dssp EEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECT
T ss_pred EEEEECCCc--HHH-------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECc
Confidence 999999995 332 2344556789999999999998631 122233333333 5677 99999999
Q ss_pred CCCC----hhhHh----HHHHHhhhc-C-C---CceEEEecCCCCCCHHHHH
Q 016529 237 DLIK----PGEIA----KKLEWYEKF-T-D---VDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 237 Dl~~----~~~~~----~~~~~~~~~-~-~---~~~v~~vSA~~g~gi~eL~ 275 (388)
|+.. ..... +...++... . . ..+++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9964 11111 222333322 1 1 3579999999999998754
No 184
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2e-16 Score=151.45 Aligned_cols=119 Identities=24% Similarity=0.253 Sum_probs=86.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.+|+|+|.||||||||+|+|++.+. .++++|++|.+++.+.+...+.++.++||||+....... ......+...++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~--~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG--RGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh--hHHHHHHHHHHHh
Confidence 3899999999999999999999874 578999999999999999999999999999996543221 1122345566789
Q ss_pred ccEEEEEEeCCCCCchHHH---HHHHhcccCCCCCCEEEEEeCCCC
Q 016529 196 ADCIVVLVDACKAPERIDE---ILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~---~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
||++++|+|++++...... .+......+ ..+|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhh
Confidence 9999999999876433221 111111111 35667777888775
No 185
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.65 E-value=5.6e-16 Score=142.27 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=88.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|+|||||+|+|++.....++..+++|.......+...+..+.+|||||+.. +......+.+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~--~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE--AGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC--cccchHHHHHHHHHHH
Confidence 55699999999999999999999998766777788887777777778889999999999743 3333333333333333
Q ss_pred --ccccEEEEEEeCCCC-CchHHHHHHHhcccC-CC--CCCEEEEEeCCCCCC
Q 016529 194 --INADCIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLIK 240 (388)
Q Consensus 194 --~~ad~ii~VvD~~~~-~~~~~~~l~~~~~~~-~~--~~piilV~NK~Dl~~ 240 (388)
..+|+++||+|.+.. .......+...+... .. ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 378999999887643 344443444333321 11 259999999999963
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=8.4e-16 Score=147.62 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=101.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEE-----------------------------------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~----------------------------------------- 152 (388)
.-++|+|+|.+|||||||+|+|+|..+....... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 4459999999999999999999997752211111 1100
Q ss_pred --------------eEEEEEeCCCeeEEEEeCCCCcchh----hhhhhHHHHHhHHhhhccccEEEEEEeCCCCC--chH
Q 016529 153 --------------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERI 212 (388)
Q Consensus 153 --------------~~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~ 212 (388)
....+.......+.+|||||+.... ...........+..++..+|++|+|+|+.+.. ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 0111122334579999999985431 12344455667778899999999999876433 222
Q ss_pred HHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCCCCCHHHHHHH
Q 016529 213 DEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (388)
Q Consensus 213 ~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~ 277 (388)
...+...+.. .+.|+++|+||+|+.+.... ........ .....+++++|+.++.|+++.+.+
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRS-FKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSS-SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCcc-ccccCCeEEEEECChHHhccCCCH
Confidence 2333444443 57899999999999865432 12222111 122347899999999988876544
No 187
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=148.65 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=84.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCC--------CCceEEeEEEEEeCCC--eeEEEEeCCCCcc-----hhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIE-----KKIH 179 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~--~~~~liDtpG~~~-----~~~~ 179 (388)
..+|+|+|++|+|||||+|+|++......... +..+.......+...+ ..+.+|||||+.+ ..+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 35899999999999999999987654322111 1111122222222233 3789999999743 2223
Q ss_pred hhhHHHHHhHHhhhc-------------cccEEEEEEeC-CCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh
Q 016529 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~-------------~ad~ii~VvD~-~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (388)
.+...+......++. .+|+++|+++. .++....+..+...+. .+.|+|+|+||+|+.....+.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHH
Confidence 333322222112222 23578888876 4566666655555543 579999999999999876654
Q ss_pred HHHHHhh---hcCCCceEEEecCCCCCC---HHHHHHHHHHhCCC
Q 016529 246 KKLEWYE---KFTDVDEVIPVSAKYGHG---VEDIRDWILTKLPL 284 (388)
Q Consensus 246 ~~~~~~~---~~~~~~~v~~vSA~~g~g---i~eL~~~i~~~l~~ 284 (388)
....... ... ..+++++||++|.| +..+...|.+.+|.
T Consensus 194 ~~k~~i~~~~~~~-~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 194 RLKKRILDEIEEH-NIKIYHLPDAESDEDEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHC-CCCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence 4222222 222 24789999999987 33345555566653
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.64 E-value=9.7e-16 Score=148.94 Aligned_cols=163 Identities=25% Similarity=0.302 Sum_probs=111.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchh--hhhhhHHHHHhHHhhh
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~ 193 (388)
.|+|+|++|||||||+++|.+.... +...+.+|..+..+.+...+ ..+.++||||+.... ...+...+ ...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----l~~~ 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRHI 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH----HHHH
Confidence 6999999999999999999998653 56777777776666666654 789999999985321 11122222 2235
Q ss_pred ccccEEEEEEeCC-CCCchHHHHHHHhcccC--CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016529 194 INADCIVVLVDAC-KAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~-~~~~~~~~~l~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
..++.+++|+|++ ++......+..+..... ....|.++|+||+|+........+...+... ..+++.+||+++.|
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~--g~~vi~iSA~~g~g 311 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE--GLAVLPVSALTGAG 311 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEECCTTTCTT
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc--CCeEEEEECCCccC
Confidence 6799999999997 22222222222221110 0358999999999998763333333443322 24799999999999
Q ss_pred HHHHHHHHHHhCCCCC
Q 016529 271 VEDIRDWILTKLPLGP 286 (388)
Q Consensus 271 i~eL~~~i~~~l~~~~ 286 (388)
+++|+++|.+.+...+
T Consensus 312 i~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 312 LPALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999886543
No 189
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=8e-16 Score=133.92 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=77.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+.++|+++|.+|||||||+|+|.+..+... +..+.++. ...+..+.+|||||... +......+ +..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~--~~~~~~~~---~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVK--LRYKLSDY---LKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCB--SSCCHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCch--HHHHHHHH---HHh
Confidence 556999999999999999999998765321 12222221 12557899999999643 22221111 223
Q ss_pred hhccccEEEEEEeCC-CCC--chHHHHHHHhccc----CCCCCCEEEEEeCCCCCChhhHhHHHHH
Q 016529 192 AGINADCIVVLVDAC-KAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~-~~~--~~~~~~l~~~~~~----~~~~~piilV~NK~Dl~~~~~~~~~~~~ 250 (388)
.+..+|++|+|+|++ +.. .....++...+.. ...+.|+++|+||+|+............
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 345699999999998 321 2333444444322 1257999999999999876554444433
No 190
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.61 E-value=2.6e-16 Score=161.62 Aligned_cols=196 Identities=18% Similarity=0.200 Sum_probs=132.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceee-----e------cCCC------CceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~-----~------~~~~------~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
.+|+|+|+.++|||||..+|+...-.+ + .+.. +.|.......+.+++..++|+||||+.+.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF-- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF-- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH--
Confidence 379999999999999999996322110 0 1110 22333333446778899999999996543
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHH-----
Q 016529 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEW----- 250 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~----- 250 (388)
...+.+.++.+|++|+|+|+..+.+.+.+.+++.+.. .+.|.++++||+|....+. ..++.+.
T Consensus 81 -------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 81 -------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp -------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred -------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence 2345566889999999999999998888888888777 7899999999999864221 1111000
Q ss_pred ------------------------------------hh------------------hcCCCceEEEecCCCCCCHHHHHH
Q 016529 251 ------------------------------------YE------------------KFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 251 ------------------------------------~~------------------~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
+. ......|++..||+++.||+.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 00 112345889999999999999999
Q ss_pred HHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHH-hhcCCCCCceeEEEEEEEEecCCc
Q 016529 277 WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSYKTRPTA 336 (388)
Q Consensus 277 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~-~~~~~~vp~s~~v~~~~~~~~~~~ 336 (388)
.|.+.+|.+....+.+... .++ ....+..|..+++++.+|+.+.+.
T Consensus 232 ~i~~~~p~p~~~~~~~~~~--------------~Vfk~~~d~~~G~la~~RV~sG~l~~g~ 278 (638)
T 3j25_A 232 VITNKFYSSTHRGPSELCG--------------NVFKIEYTKKRQRLAYIRLYSGVLHLRD 278 (638)
T ss_dssp HHHHSCCCSGGGSCCCCCB--------------EEBCCCCCSTTCCCCBCCBSSBCCCSCC
T ss_pred hhhccccCcccchhhhhcc--------------eeeeeeeeccCceEEEEEEEcCcccCCC
Confidence 9999998754332222100 001 112456677778888887766553
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=1.8e-15 Score=138.42 Aligned_cols=167 Identities=20% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCccEEEEEeCCCCChhHHHHHHh-----CCceeeecCCCCceEE------------eEEEEE-----------------
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC----------------- 158 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~-----~~~~~~~~~~~~~t~~------------~~~~~~----------------- 158 (388)
.+...++++|.+||||||++++|. |.+...+...++.+.. ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 356689999999999999999998 7777766655542111 000000
Q ss_pred ------------e-CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHH-----HHHhc
Q 016529 159 ------------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI-----LEEGV 220 (388)
Q Consensus 159 ------------~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~-----l~~~~ 220 (388)
. ..++.+.+|||||.... ..... ........+.. +++++++|+.........+ .....
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~--~~~~~-l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMET--FLFHE-FGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHH--HHHSH-HHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccch--hhhhh-hHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 0 01247999999996432 11111 11222234466 8999999987654433221 11111
Q ss_pred ccCCCCCCEEEEEeCCCCCChhhHhHHHHH----------------------------hhhcCCCceEEEecCCCCCCHH
Q 016529 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 221 ~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----------------------------~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
.. .+.|+++|+||+|+...........+ ........+++++||++|.|++
T Consensus 168 ~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred cc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 12 46899999999999875433221111 1222233478999999999999
Q ss_pred HHHHHHHHhCCCC
Q 016529 273 DIRDWILTKLPLG 285 (388)
Q Consensus 273 eL~~~i~~~l~~~ 285 (388)
+|+++|.+.++.+
T Consensus 246 ~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 246 DLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999877543
No 192
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.60 E-value=2e-15 Score=157.05 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=81.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee-----ee------c------CCCCceEEeEEEEEeC-------CCeeEEEEe
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IV------T------NKPQTTRHRILGICSG-------PEYQMILYD 169 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~-----~~------~------~~~~~t~~~~~~~~~~-------~~~~~~liD 169 (388)
+-.+|+|+|+.++|||||..+|+...-. .+ . ...+.|.......+.+ +++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3448999999999999999999732210 00 1 1112222211112222 357899999
Q ss_pred CCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016529 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 170 tpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
|||+.+. ...+..+++-+|++|+|+|+..+.+.+.+.+++.... .+.|.++++||+|...
T Consensus 92 TPGHvDF---------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDF---------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTC---------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred CCCCccc---------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 9996543 2345566889999999999999999998888887766 7899999999999853
No 193
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=1.4e-15 Score=144.52 Aligned_cols=185 Identities=21% Similarity=0.288 Sum_probs=112.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCceEE-----------------eEEEE-------------
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-----------------RILGI------------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t~~-----------------~~~~~------------- 157 (388)
+...++|+|++|+|||||+|.|. +.++.+....+.++.. .....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 34489999999999999999997 4555444433332210 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC
Q 016529 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (388)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p 228 (388)
+...+.++.|+||||+.+... .....+|++++|+|+..+.. .. .+.......|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~~~~--~~----~i~~~i~~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGAGDE--LQ----GIKKGIFELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCCccc--HH----HHHHHHhccc
Confidence 123578999999999864321 11468999999999864321 00 0110001246
Q ss_pred EEEEEeCCCCCChhh-HhHHHHHhh----hcC----C-CceEEEecCCCCCCHHHHHHHHHHhCC---CCCCCCCCCccC
Q 016529 229 ILLVLNKKDLIKPGE-IAKKLEWYE----KFT----D-VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVS 295 (388)
Q Consensus 229 iilV~NK~Dl~~~~~-~~~~~~~~~----~~~----~-~~~v~~vSA~~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~ 295 (388)
.++|+||+|+..... .....+.+. ... . ..+++.+||++|.|+++|++.|.+..+ .+++ + .+..+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~~~r~ 273 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-AGKRR 273 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-HHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-HHHHH
Confidence 688889999764322 111111111 111 1 247899999999999999999988764 2222 1 12222
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCC
Q 016529 296 EHPERFFVGEIIREKIFMQYRNEV 319 (388)
Q Consensus 296 ~~~~~~~~~eiire~i~~~~~~~v 319 (388)
. ....++.+++|++++..+.+..
T Consensus 274 ~-~~~~~~~~~i~~~~~~~~~~~~ 296 (337)
T 2qm8_A 274 E-QDVKWMWALVHERLHQRLVGSA 296 (337)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTSSH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhCc
Confidence 2 2366889999999998877643
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.59 E-value=2.9e-15 Score=133.48 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=97.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC-----ceeeecCCCCceEEe--------EEEEE------------------eCCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR--------ILGIC------------------SGPE 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~-----~~~~~~~~~~~t~~~--------~~~~~------------------~~~~ 162 (388)
+.++|+++|.+|||||||+++|++. +...+...++++.+. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4468999999999999999999864 233344444332110 00001 2235
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh
Q 016529 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (388)
..+.+|||+|....+. .+...++.+++|+|++.+...... .... .+.|+++|+||+|+.+..
T Consensus 109 ~d~iiidt~G~~~~~~------------~~~~~~~~~i~vvd~~~~~~~~~~----~~~~--~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV------------DFDLGENYRVVMVSVTEGDDVVEK----HPEI--FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGGG------------GCCCSCSEEEEEEEGGGCTTHHHH----CHHH--HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCCc------------hhccccCcEEEEEeCCCcchhhhh----hhhh--hhcCCEEEEecccCCcch
Confidence 6789999999411110 001256789999999876432211 1111 347899999999986432
Q ss_pred --hHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 243 --EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 243 --~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
........+.......+++++||++|.|+++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 233444444444444689999999999999999999987643
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=1.7e-13 Score=130.48 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=61.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcchhh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 178 (388)
.+|+|+|.||||||||+|+|++... .+.+.|++|..+..+.+...+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 4899999999999999999998873 467788888776655555444 4799999999854221
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCC
Q 016529 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (388)
. ...+...+...++.+|++++|+|+++
T Consensus 82 ~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 00111223345789999999999986
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=1e-13 Score=134.85 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=80.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecC------CCCceE-EeEEEEEeCC--CeeEEEEeCCCCcchh-----hhhh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN------KPQTTR-HRILGICSGP--EYQMILYDTPGIIEKK-----IHML 181 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~------~~~~t~-~~~~~~~~~~--~~~~~liDtpG~~~~~-----~~~~ 181 (388)
.+|+|+|++|||||||+|.|+|..+..... ...++. ..+...+... ...+.+|||||+.... +..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 479999999999999999999976532110 011221 1111111112 2368999999975321 1111
Q ss_pred hHHHHHhH-----------Hhhhcc--ccEEEEEEeCC-CCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH
Q 016529 182 DSMMMKNV-----------RSAGIN--ADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (388)
Q Consensus 182 ~~~~~~~~-----------~~~~~~--ad~ii~VvD~~-~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~ 247 (388)
........ +.++.+ ++++||+++.+ .++...+..+...+. .+.|+|+|+||+|+.....+...
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHH
Confidence 11111111 122333 45677777776 567776655555443 47899999999999887665432
Q ss_pred H----HHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 248 L----EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 248 ~----~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
. ..+... ..+++++||+++.++++++..+...+|.
T Consensus 189 k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 189 KKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHHHH--TCCCCCCC-----------------CCE
T ss_pred HHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 2 222222 2478999999999999999888887763
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1e-13 Score=129.64 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=81.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCC-------Cce-EEeEEEEEe--CCCeeEEEEeCCCCcc-----hhhh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTT-RHRILGICS--GPEYQMILYDTPGIIE-----KKIH 179 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-------~~t-~~~~~~~~~--~~~~~~~liDtpG~~~-----~~~~ 179 (388)
..+|+|+|++|+|||||+|+|.+......+..+ .+. ......... .....+.+|||||+.. ..+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 358999999999999999999886332222110 111 111111122 2235789999999732 1222
Q ss_pred hhhHHHHHhHHhhh-------------ccccEEEEEEeCCC-CCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh
Q 016529 180 MLDSMMMKNVRSAG-------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (388)
Q Consensus 180 ~~~~~~~~~~~~~~-------------~~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (388)
.+...+......++ ..+++++|+++.+. +.......+...+ ..+.|+++|+||+|+....++.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHHH
Confidence 22221111111111 12455777777654 4666554333333 2467999999999998765543
Q ss_pred ----HHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016529 246 ----KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 246 ----~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
...+..... + .+++++||++| |+++++.++.+.+.
T Consensus 175 ~~~~~~~~~~~~~-~-~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 175 RLKKRILDEIEEH-N-IKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHT-T-CCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-CeEEecCCccc-cccHHHHHHHHHhh
Confidence 222333332 3 47899999999 99999988887664
No 198
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.47 E-value=3.9e-16 Score=152.70 Aligned_cols=244 Identities=16% Similarity=0.198 Sum_probs=133.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhC------CceeeecCCCC------------------------ceEEeE----EEEEeCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ------------------------TTRHRI----LGICSGP 161 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~------------------------~t~~~~----~~~~~~~ 161 (388)
..|+++|.+|+||||++++|.+ .++..+...+. ++.+.. .......
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999875 33333332211 222210 0011125
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCC-C-EEEEEeCCCCC
Q 016529 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLI 239 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~-p-iilV~NK~Dl~ 239 (388)
++.++++||||..... ..+...+ ..+ ..+..+|.+++|+|+..+.. .... ...+. ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~-~~l~~~l-~~i-~~~~~~d~vllVvda~~g~~-~~~~-~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE-KGLLEEM-KQI-KEITNPDEIILVIDGTIGQQ-AGIQ-AKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSH-HHHHHHH-HHT-TSSSCCSEEEEEEEGGGGGG-HHHH-HHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCcccc-HHHHHHH-HHH-HHHhcCcceeEEeeccccHH-HHHH-HHHHh---hcccCCeEEEEeCCCCc
Confidence 6789999999975421 1111111 111 22337899999999976542 2222 22222 235 5 88999999986
Q ss_pred Chhh-HhHHHHHhhh-------------cCCCceEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHH
Q 016529 240 KPGE-IAKKLEWYEK-------------FTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVG 304 (388)
Q Consensus 240 ~~~~-~~~~~~~~~~-------------~~~~~~v~~vSA~~g~g-i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
.... .......... ...+.+...+|+..|.| +..|++.+.+.+ +.+. ++.+.++...
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~-------~e~~-~~~~~k~~~~ 323 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV-------DEKT-EESIDAIMRG 323 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS-------CSSS-STTHHHHCCS
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH-------Hhhh-HHHHHHHHcC
Confidence 4322 1112221110 01122334567777777 766666555443 2333 4556666666
Q ss_pred HHHHHHHHhhcCC------------CCCceeEE-EEEEEEecCCceEEEEEEEE----EeeCCeeeEEEecCChhHHHHH
Q 016529 305 EIIREKIFMQYRN------------EVPYACQV-NVVSYKTRPTAKDFIQVEIV----VEKNSQKIILIGKGGKALKLLA 367 (388)
Q Consensus 305 eiire~i~~~~~~------------~vp~s~~v-~~~~~~~~~~~~~~i~~~~~----~e~~~q~~~vig~~g~~i~~i~ 367 (388)
++.++.++..+.. .+||...+ ....+...+....++.+.+. +||++++.+ +|+++++|+
T Consensus 324 ~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i----~~sr~~rI~ 399 (432)
T 2v3c_C 324 KFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII----KASRIRRIA 399 (432)
T ss_dssp CCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC----CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc----CHHHHHHHH
Confidence 7778888887775 88986542 22333322112344555566 899999955 799999999
Q ss_pred HHHHH---HHHHhcC
Q 016529 368 TAARL---DIEDFLQ 379 (388)
Q Consensus 368 ~~~~~---~l~~~~~ 379 (388)
..|+. ++.+++.
T Consensus 400 ~gsg~~~~~v~~ll~ 414 (432)
T 2v3c_C 400 RGSGTTENDVREVLR 414 (432)
T ss_dssp HHTTSCHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHH
Confidence 99976 6666554
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.43 E-value=2.7e-13 Score=129.76 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=61.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC---------------------CCeeEEEEeCCCCc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------PEYQMILYDTPGII 174 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~liDtpG~~ 174 (388)
.+|+|+|.||||||||+|+|++.. ..+.+.+++|.....+.... .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 379999999999999999999875 33566677766554444332 23579999999985
Q ss_pred chhh--hhhhHHHHHhHHhhhccccEEEEEEeCCC
Q 016529 175 EKKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (388)
Q Consensus 175 ~~~~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (388)
.... ..+.. .+...++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~----~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGN----QFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTH----HHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHH----HHHHHHHhCCEEEEEEECCC
Confidence 4321 12222 23345789999999999985
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.42 E-value=7.4e-14 Score=147.49 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=77.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecC---------------CCCceEEeEEE--EE--------------eCCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN---------------KPQTTRHRILG--IC--------------SGPE 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~---------------~~~~t~~~~~~--~~--------------~~~~ 162 (388)
+..+|+|+|++|+|||||+++|++....+... ..+.|...... .+ ...+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 44589999999999999999998653222111 11222211111 11 1236
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016529 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
..+.||||||+.+ +.. .+..+++.+|++|+|+|++++.......++..... .+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d--f~~-------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD--FSS-------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS--SCH-------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh--hHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 7899999999643 322 34455789999999999998876655554444333 579999999999986
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.40 E-value=7.6e-13 Score=118.09 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=42.0
Q ss_pred CCCEEEEEeCCCCCChh--hHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016529 226 KLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 226 ~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
..|.++|+||+|+.+.. ........+.......+++++||++|.|+++++++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 36789999999986532 2333344444433446899999999999999999998754
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.38 E-value=2.5e-15 Score=149.18 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=136.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce-----------E--EeEEEE----------------E
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------C 158 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t-----------~--~~~~~~----------------~ 158 (388)
+...|+++|.+||||||++++|. |.++..++..+... + ..+... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 77766655432111 0 011110 0
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCE-EEEEeCCC
Q 016529 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pi-ilV~NK~D 237 (388)
...++.++||||||..+... .+...+.. ... +..+|.+++|+|+..+.... .....+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~-~~~-~i~pd~vllVvDa~~g~~~~--~~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQ-VAN-AIQPDNIVYVMDASIGQACE--AQAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHH-HHH-HHCCSEEEEEEETTCCTTHH--HHHHHHHH---HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHH-HHh-hhcCceEEEEEeccccccHH--HHHHHHHh---hcCceEEEEeCCc
Confidence 12567899999999754221 12111211 112 22789999999998765422 12222222 2575 89999999
Q ss_pred CCChhh-HhHHHHHhh-------------hcCCCceEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCCccCCcchHHH
Q 016529 238 LIKPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFF 302 (388)
Q Consensus 238 l~~~~~-~~~~~~~~~-------------~~~~~~~v~~vSA~~g~g-i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 302 (388)
...... .......+. ....+.+.+.+|+.+|.| +.+|++++.+...+..........+.. +.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~---~~ 328 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ---FT 328 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSG---GG
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC---CC
Confidence 874322 111221111 111233456689999999 999999998762211111222222221 11
Q ss_pred HHHHHHHHHH--------hhcCCCCCceeE--EEEEEEEecCCceEEEEEEEE----EeeCCee-eEEEecCChhHHHHH
Q 016529 303 VGEIIREKIF--------MQYRNEVPYACQ--VNVVSYKTRPTAKDFIQVEIV----VEKNSQK-IILIGKGGKALKLLA 367 (388)
Q Consensus 303 ~~eiire~i~--------~~~~~~vp~s~~--v~~~~~~~~~~~~~~i~~~~~----~e~~~q~-~~vig~~g~~i~~i~ 367 (388)
..+++ +.+- ..+-..+|+.+. +....+........++.+.+. .||++|+ ..++|.+|+.+++|+
T Consensus 329 l~d~~-~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria 407 (504)
T 2j37_W 329 LRDMY-EQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVA 407 (504)
T ss_dssp GCCCH-HHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHH
T ss_pred HHHHH-HHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHH
Confidence 11111 1111 112345676543 211111100001111222232 5777777 788899999999999
Q ss_pred HHHHH---HHHHhcC
Q 016529 368 TAARL---DIEDFLQ 379 (388)
Q Consensus 368 ~~~~~---~l~~~~~ 379 (388)
..|.. ++.+++.
T Consensus 408 ~gsg~~~~~v~~ll~ 422 (504)
T 2j37_W 408 RGSGVSTRDVQELLT 422 (504)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHH
Confidence 99987 6666543
No 203
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=3.2e-13 Score=129.74 Aligned_cols=189 Identities=19% Similarity=0.139 Sum_probs=90.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcchh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 177 (388)
..+|+|+|.||||||||+|+|++.++ .+++.|++|..+..+.+...+ ..+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 34899999999999999999999886 567888888877666655433 249999999985422
Q ss_pred hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCC
Q 016529 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (388)
.....+...+..+++.+|++++|+|+++... +.. +.. ...| +|++|....+-.......+.+....
T Consensus 101 --s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~-----i~~-v~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 101 --HNGQGLGNAFLSHISACDGIFHLTRAFEDDD-----ITH-VEG--SVDP----IRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --chhhHHHHHHHHHHHhcCeEEEEEecCCCcc-----hhh-hcC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 1111122245566889999999999975321 111 111 1233 4555544322211111222111111
Q ss_pred ceEEEec--CCCCCCHHHHHHHHHHhCCCC-CCCC-CCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEE
Q 016529 258 DEVIPVS--AKYGHGVEDIRDWILTKLPLG-PAYY-PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325 (388)
Q Consensus 258 ~~v~~vS--A~~g~gi~eL~~~i~~~l~~~-~~~~-~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v 325 (388)
......| ++.+.+..++++.+...++++ ++.. ..+ .+. .. .+++ +.++......++|.+.+
T Consensus 167 ~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~-~~~---~e--~e~i-~~~~llt~KPviy~~Nv 231 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHD-WND---KE--IEVL-NKHLFLTSKPMVYLVNL 231 (396)
T ss_dssp TCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCC-CCH---HH--HHHH-HHHCCGGGSCEEEEEEC
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhccc-CCH---HH--HHHH-HHHHHHhCCceEEEEEe
Confidence 1122333 577789999999999999887 4431 111 111 11 2444 35555556677776543
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.32 E-value=1.4e-11 Score=119.43 Aligned_cols=190 Identities=17% Similarity=0.152 Sum_probs=113.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc----eeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~----~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
+.+.++|+|++|+|||||+|.|.|.. ..+......+++..+ ..... ...+.++|+||+... ...+...+ ..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~-~~~~~~~L-~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGST-NFPPDTYL-EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGS-SCCHHHHH-HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccch-HHHHHHHH-HH
Confidence 44589999999999999999999842 111111122222211 22222 236899999997532 12222222 11
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC------------ChhhHhHHHHHhh----
Q 016529 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE---- 252 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~------------~~~~~~~~~~~~~---- 252 (388)
. .+...+..++ ++... .+.....+...+.. .++|+++|+||.|+. ....+......+.
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1334455555 77654 35555566666555 578999999999974 1222222222221
Q ss_pred -hc-CCCceEEEecC--CCCCCHHHHHHHHHHhCCCCCCCCC-----C-CccCCcchHHHHHHHHHHHHHh
Q 016529 253 -KF-TDVDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYYP-----K-DIVSEHPERFFVGEIIREKIFM 313 (388)
Q Consensus 253 -~~-~~~~~v~~vSA--~~g~gi~eL~~~i~~~l~~~~~~~~-----~-~~~~~~~~~~~~~eiire~i~~ 313 (388)
.. .....++.+|+ ..+.|+++|.+.|.+.++++++.++ . ...+.+..+....+.+++..+.
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~ 288 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22347899999 6677899999999999999887663 2 2223344556666777766544
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.30 E-value=8.2e-14 Score=133.95 Aligned_cols=149 Identities=22% Similarity=0.223 Sum_probs=94.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC-----ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh--hhhhhHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKN 188 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~ 188 (388)
.+|+++|.+|+|||||+|+|++. ....++..+++|+......+. ..+.++||||+.... ...+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999986 445578899999887654433 248999999986432 11111111111
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCC
Q 016529 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.. .-...+.++|++++......-.......+.. .+.|+++++||+|...........+.+.+..+. .+.+.++...
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~~ 315 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRYA 315 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGGT
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchhh
Confidence 10 0167899999999853210000000223333 568999999999998776666666666655443 4555555544
Q ss_pred CCH
Q 016529 269 HGV 271 (388)
Q Consensus 269 ~gi 271 (388)
.++
T Consensus 316 ~~~ 318 (369)
T 3ec1_A 316 AEF 318 (369)
T ss_dssp TTC
T ss_pred hhc
Confidence 443
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.29 E-value=7e-12 Score=118.23 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=76.7
Q ss_pred EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCC---------CC---chHHHHHHHhcccC
Q 016529 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGDH 223 (388)
Q Consensus 156 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~---------~~---~~~~~~l~~~~~~~ 223 (388)
..+..++..+.+|||+|. ..+ ...|..++++++++|||+|.++ .. .....++...+...
T Consensus 154 ~~~~~~~v~l~iwDtaGQ--e~~-------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 154 YDFVVKDIPFHLIDVGGQ--RSE-------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp EEEESSSCEEEEEECCSC--HHH-------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred EEEEeeeeeeccccCCCc--ccc-------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345567788999999994 333 3457788999999999999972 12 22333444444321
Q ss_pred -CCCCCEEEEEeCCCCCChhh-----------------HhHHHHHhhhcC-------------------------CCceE
Q 016529 224 -KDKLPILLVLNKKDLIKPGE-----------------IAKKLEWYEKFT-------------------------DVDEV 260 (388)
Q Consensus 224 -~~~~piilV~NK~Dl~~~~~-----------------~~~~~~~~~~~~-------------------------~~~~v 260 (388)
..+.|++|++||+|+..... ..+...++.... ....+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 25789999999999854211 112222211110 12457
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (388)
++|||+++.||+.+|+.+.+.+
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHH
Confidence 8899999999999998877644
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.27 E-value=1.6e-13 Score=131.78 Aligned_cols=143 Identities=23% Similarity=0.218 Sum_probs=88.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc------eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh--hhhhhHHHHH
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~ 187 (388)
.+|+++|.+|+|||||+|+|++.. ...++..+++|+......+.. .+.++||||+.... ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999999853 344688899998776544332 38999999986532 1122222211
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecC
Q 016529 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
... .....+.++|++|+......-.......+.. .+.|+++++||+|...........+.+.+..+. .+.+.++
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~ 311 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTP 311 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCH
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCch
Confidence 111 1357789999999843210000001223333 568999999999998877777666676665443 3444443
No 208
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.23 E-value=4.4e-11 Score=112.36 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=77.4
Q ss_pred EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCC-------CC--C---chHHHHHHHhcccC
Q 016529 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------KA--P---ERIDEILEEGVGDH 223 (388)
Q Consensus 156 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~-------~~--~---~~~~~~l~~~~~~~ 223 (388)
..+..++..+.+|||+|. ..+ ...|..++++++++|||+|.+ +. . .....++...+...
T Consensus 160 ~~~~~~~v~l~iwDtgGQ--e~~-------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGGQ--RSE-------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp EEEEETTEEEEEEEECCS--HHH-------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEEeeceeeEEEEcCCc--hhH-------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 344556789999999994 333 345778899999999999765 21 1 22333444444321
Q ss_pred -CCCCCEEEEEeCCCCCChh------------------hHhHHHHHhh--------hcCCCceEEEecCCCCCCHHHHHH
Q 016529 224 -KDKLPILLVLNKKDLIKPG------------------EIAKKLEWYE--------KFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 224 -~~~~piilV~NK~Dl~~~~------------------~~~~~~~~~~--------~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
..+.|++|++||+|+.... ...+...++. .......+++|||+++.||+.+|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 2579999999999985422 1222222221 111234678999999999999999
Q ss_pred HHHHhC
Q 016529 277 WILTKL 282 (388)
Q Consensus 277 ~i~~~l 282 (388)
.+.+.+
T Consensus 311 ~v~~~I 316 (327)
T 3ohm_A 311 AVKDTI 316 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.4e-10 Score=112.28 Aligned_cols=146 Identities=14% Similarity=0.216 Sum_probs=85.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee---ecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchh-----hhhh----h
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKK-----IHML----D 182 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~-----~~~~----~ 182 (388)
+++|+|++|+|||||+|.|.|..+.. ....++.+...+.......+ ..+.++|++|+.... +..+ .
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 49999999999999999999975421 11234444443333333333 268999999985421 1111 1
Q ss_pred HHHHHhHHhh---------hccc--c-EEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHH
Q 016529 183 SMMMKNVRSA---------GINA--D-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (388)
Q Consensus 183 ~~~~~~~~~~---------~~~a--d-~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~ 250 (388)
..+...+..+ ..++ | +++|++|+.++....+..+...+. .+.|+|+|+||+|...+.++......
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHH
Confidence 1111111111 1223 2 477788888888777777776664 57899999999999988776665554
Q ss_pred hhh--cCCCceEEEecC
Q 016529 251 YEK--FTDVDEVIPVSA 265 (388)
Q Consensus 251 ~~~--~~~~~~v~~vSA 265 (388)
+.. .....+++.+|.
T Consensus 201 I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHcCCcEEecCC
Confidence 443 112345666664
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.14 E-value=2.2e-12 Score=124.12 Aligned_cols=178 Identities=22% Similarity=0.199 Sum_probs=107.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcchh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 177 (388)
..+|+|+|.+|||||||+|+|++...+.+++.|++|..+..+.+...+ ..+.+|||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 458999999999999999999998875678899999887777665544 468999999975421
Q ss_pred h--hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC------CChh-------
Q 016529 178 I--HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL------IKPG------- 242 (388)
Q Consensus 178 ~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl------~~~~------- 242 (388)
. ..+.. .+...++.+|++++|+|+.+. .+++.|.+++|- .+..
T Consensus 100 s~~e~L~~----~fl~~ir~~d~il~Vvd~~~d------------------~~i~~v~~~~dP~~di~ildeel~~~D~~ 157 (392)
T 1ni3_A 100 STGVGLGN----AFLSHVRAVDAIYQVVRAFDD------------------AEIIHVEGDVDPIRDLSIIVDELLIKDAE 157 (392)
T ss_dssp CSSSSSCH----HHHHHHTTCSEEEEEEECCCT------------------TCSSCCSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH----HHHHHHHHHHHHHHHHhcccc------------------ceeeeeccccCcchhhhhchhhhHHHHHH
Confidence 1 11222 234456789999999998751 111123344441 1111
Q ss_pred hHhHHHHHhhhc-CCC-ceEEEecCCCCCCHHHHHHHHHHhCCCC-CCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCC
Q 016529 243 EIAKKLEWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKLPLG-PAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEV 319 (388)
Q Consensus 243 ~~~~~~~~~~~~-~~~-~~v~~vSA~~g~gi~eL~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~v 319 (388)
.+......+... ... ..+ -++.+.++.++++.+.+.+..+ +..++ ...++. + .+++| +++......+
T Consensus 158 ~~~k~~~~l~~~~~~~g~ti---~sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~~~-e----~e~i~-~~~~lt~kp~ 227 (392)
T 1ni3_A 158 FVEKHLEGLRKITSRGANTL---EMKAKKEEQAIIEKVYQYLTETKQPIRK-GDWSNR-E----VEIIN-SLYLLTAKPV 227 (392)
T ss_dssp HHHHHHHHHHHTTCCSSCSS---SHHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCCHH-H----HHHHH-TTCCGGGSCE
T ss_pred HHHHHHHHHHHHHHhcCCcc---ccccHHHHHHHHHHHHHHhccCCceeec-CCCCHH-H----HHHHH-HHhhhccCce
Confidence 111111222221 100 011 1556678888999998888777 65554 323332 1 25565 4444455666
Q ss_pred CceeE
Q 016529 320 PYACQ 324 (388)
Q Consensus 320 p~s~~ 324 (388)
+|.+.
T Consensus 228 ~y~~N 232 (392)
T 1ni3_A 228 IYLVN 232 (392)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=2.5e-10 Score=106.62 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=83.8
Q ss_pred HHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC
Q 016529 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (388)
Q Consensus 130 SLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~ 209 (388)
+|+.+++...+.. .....|..+.+......+ ..+.+||| ++.+..+ ++.+++++|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~-~~~~iwD~----qer~~~l-------~~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDET-GSGVIENV----LHRKNLL-------TKPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCS-SSEEEEEE----CCCSCEE-------TTTTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCC-CeEEEEEE----cccccee-------eccccccCCEEEEEEeCCCCC
Confidence 5777777666531 111112222222222222 37999999 2344443 335689999999999999764
Q ss_pred ---chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHH
Q 016529 210 ---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (388)
Q Consensus 210 ---~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~ 280 (388)
.....|+. .+.. .+.|+++|+||+|+.+...+.+..++........+++++||++|.|+++++.++..
T Consensus 99 ~s~~~l~~~l~-~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 99 TSTYIIDKFLV-LAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCHHHHHHHHH-HHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 23344443 3333 57999999999999876543222222222111158999999999999999998764
No 212
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.09 E-value=8e-11 Score=112.10 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=79.7
Q ss_pred EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC------------CchHHHHHHHhccc-
Q 016529 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD- 222 (388)
Q Consensus 156 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~------------~~~~~~~l~~~~~~- 222 (388)
..+..++..+.+|||+|. ..+. ..|..++++++++|||+|+++. ......++...+..
T Consensus 186 ~~~~~~~~~l~iwDt~GQ--e~~r-------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 186 THFTFKDLHFKMFDVGGQ--RSER-------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp EEEEETTEEEEEEEECCS--GGGG-------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEEeeCCeeEEEEeCCCc--hhhh-------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 344556789999999995 4433 3466779999999999999873 12233344444432
Q ss_pred CCCCCCEEEEEeCCCCCChh-----------------hHhHHHHHhh----hc-----CCCceEEEecCCCCCCHHHHHH
Q 016529 223 HKDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 223 ~~~~~piilV~NK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
...+.|++||+||+|+.... ...+...++. .. .....+++|||++|.||+++|+
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 12579999999999985321 1222223322 11 2345789999999999999999
Q ss_pred HHHHhC
Q 016529 277 WILTKL 282 (388)
Q Consensus 277 ~i~~~l 282 (388)
++.+.+
T Consensus 337 ~v~~~i 342 (353)
T 1cip_A 337 AVTDVI 342 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 213
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.09 E-value=1.8e-11 Score=113.14 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=98.4
Q ss_pred HhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCC
Q 016529 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+.+...+..+|+|++|+|+.++.......+.+++ .++|+++|+||+|+.+......+.+++... + .+++++||+
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~-g-~~~i~iSA~ 88 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQ-G-IRSLSINSV 88 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTT-T-CCEEECCTT
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhc-C-CcEEEEECC
Confidence 4566668999999999999987654433454444 468999999999999876666666666432 2 378999999
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEE
Q 016529 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFI 340 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i 340 (388)
+|.|+++|++.+.+.++..............+. +++..+.+++||||.+|.+.+... ++++...
T Consensus 89 ~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~----------~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~ 158 (282)
T 1puj_A 89 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI----------RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ 158 (282)
T ss_dssp TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCE----------EEEEEESTTSSHHHHHHHHHTSCCC------------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----------eEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee
Confidence 999999999988776532100000000000000 245678999999999987754332 2322221
Q ss_pred EEEEEEeeCCeeeEEEecCCh
Q 016529 341 QVEIVVEKNSQKIILIGKGGK 361 (388)
Q Consensus 341 ~~~~~~e~~~q~~~vig~~g~ 361 (388)
. .+ +.+....++|++|-
T Consensus 159 ~-~~---~~~~~~~l~DtpG~ 175 (282)
T 1puj_A 159 Q-WV---KVGKELELLDTPGI 175 (282)
T ss_dssp C-CE---EETTTEEEEECCCC
T ss_pred E-EE---EeCCCEEEEECcCc
Confidence 1 11 12457889999994
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=4.9e-11 Score=114.45 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=62.1
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh----hHhHHHHHhhhcCCC--c
Q 016529 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--D 258 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~ 258 (388)
+.+.+..+.+.+|++++|+|++++.......+.+. ..++|+++|+||+|+.+.. ...++........+. .
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE 134 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence 33445555778899999999987432211122222 2478999999999997643 222332222222232 3
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 016529 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
+++.+||++|.|+++|++.|.+..
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeCCCCcCHHHHHhhhhhhc
Confidence 789999999999999999998764
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=100.34 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=77.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeec-------CCCCceEEeEEEEEe-CC--CeeEEEEeCCCCcchhh-----hh
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICS-GP--EYQMILYDTPGIIEKKI-----HM 180 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~-------~~~~~t~~~~~~~~~-~~--~~~~~liDtpG~~~~~~-----~~ 180 (388)
.+++|+|++|+|||||+|.|.|...+... ..+.+......+.+. .. ...+.++|++|+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 47999999999999999999875432111 111121111122211 11 13689999999854211 11
Q ss_pred hhHHHHHhHHh--------------hhccccEEEEEEeCC-CCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh
Q 016529 181 LDSMMMKNVRS--------------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (388)
Q Consensus 181 ~~~~~~~~~~~--------------~~~~ad~ii~VvD~~-~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (388)
+.......... .+..++++++++|.. .+....+..+...+.. . .++|+|+||+|.....+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHH
Confidence 22222111111 123468889999965 6777777777766665 4 8999999999999877655
Q ss_pred HHHH
Q 016529 246 KKLE 249 (388)
Q Consensus 246 ~~~~ 249 (388)
....
T Consensus 160 ~~k~ 163 (270)
T 3sop_A 160 EFKQ 163 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=1.1e-10 Score=111.98 Aligned_cols=142 Identities=20% Similarity=0.150 Sum_probs=88.7
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh----hHhHHHHHhhhcCCC--ceEE
Q 016529 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 261 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~v~ 261 (388)
.+..++..++++++|+|++++.......+.+.+ .++|+++|+||+|+.+.. ...++........+. .+++
T Consensus 64 ~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~ 139 (369)
T 3ec1_A 64 MLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVC 139 (369)
T ss_dssp HHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEE
T ss_pred HHHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEE
Confidence 344456789999999999986644333333332 368999999999997643 222332222222233 4789
Q ss_pred EecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEE----------
Q 016529 262 PVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK---------- 331 (388)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~---------- 331 (388)
.+||++|.|+++|++.|.+..... +++..+.+++||||++|.+.+.
T Consensus 140 ~iSA~~g~gi~~L~~~I~~~~~~~------------------------~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~ 195 (369)
T 3ec1_A 140 LVSAAKGIGMAKVMEAINRYREGG------------------------DVYVVGCTNVGKSTFINRIIEEATGKGNVITT 195 (369)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHTTS------------------------CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEECCCCCCHHHHHHHHHhhcccC------------------------cEEEEcCCCCchHHHHHHHHhhccCCccceee
Confidence 999999999999999998765321 1234556677777666654432
Q ss_pred -ecCCceEEEEEEEEEeeCCeeeEEEecCCh
Q 016529 332 -TRPTAKDFIQVEIVVEKNSQKIILIGKGGK 361 (388)
Q Consensus 332 -~~~~~~~~i~~~~~~e~~~q~~~vig~~g~ 361 (388)
..++++.... .. . ......++|+||-
T Consensus 196 ~~~~gtT~~~~-~~--~-~~~~~~liDtPG~ 222 (369)
T 3ec1_A 196 SYFPGTTLDMI-EI--P-LESGATLYDTPGI 222 (369)
T ss_dssp EECTTSSCEEE-EE--E-CSTTCEEEECCSC
T ss_pred cCCCCeEEeeE-EE--E-eCCCeEEEeCCCc
Confidence 2345433321 11 1 1234789999994
No 217
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.99 E-value=3.3e-10 Score=108.24 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=75.6
Q ss_pred EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC------------CchHHHHHHHhccc-C
Q 016529 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD-H 223 (388)
Q Consensus 157 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~------------~~~~~~~l~~~~~~-~ 223 (388)
.+..++..+.+|||+|. ..+ ...+..++.+++++|||+|.++. ......++...+.. .
T Consensus 195 ~~~~~~~~l~i~Dt~Gq--~~~-------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQ--RSE-------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccch--hhh-------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34556789999999995 332 23466789999999999999872 12333444444432 1
Q ss_pred CCCCCEEEEEeCCCCCCh------------------hhHhHHHHHh----hhc-----CCCceEEEecCCCCCCHHHHHH
Q 016529 224 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 224 ~~~~piilV~NK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
..+.|+|||+||+|+... ....+...++ ... .....+++|||++|.||+++|+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 257899999999998521 1122222222 111 1235789999999999999999
Q ss_pred HHHHhC
Q 016529 277 WILTKL 282 (388)
Q Consensus 277 ~i~~~l 282 (388)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 218
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.95 E-value=1.6e-09 Score=104.41 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=77.6
Q ss_pred EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCC----------CC--chHHHHHHHhccc-C
Q 016529 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGD-H 223 (388)
Q Consensus 157 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~----------~~--~~~~~~l~~~~~~-~ 223 (388)
.+..++..+.+|||+|. ..+.. .+..++++++++|||+|+++ .. .....|+...... .
T Consensus 211 ~~~~~~v~l~iwDtaGQ--e~~r~-------~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQ--RDERR-------KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECCS--GGGGG-------GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccchh--hhhhh-------hhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 34456789999999994 44333 46677999999999999987 21 3334455444433 1
Q ss_pred CCCCCEEEEEeCCCCCChhh--------------------------------HhHHHHHh----hhc-------CCCceE
Q 016529 224 KDKLPILLVLNKKDLIKPGE--------------------------------IAKKLEWY----EKF-------TDVDEV 260 (388)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~~--------------------------------~~~~~~~~----~~~-------~~~~~v 260 (388)
..+.|++||+||+|+..... ......++ ... .....+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 25789999999999853221 11111111 111 113457
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 016529 261 IPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (388)
++|||+++.||+++|.++.+.+
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHH
Confidence 8999999999999999987654
No 219
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.94 E-value=9.3e-10 Score=104.69 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCC---------CC---chHHHHHHHhcccC-CCCC
Q 016529 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGDH-KDKL 227 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~---------~~---~~~~~~l~~~~~~~-~~~~ 227 (388)
....+.+|||+|. ..+.. .+..++++++++|+|+|.+. .. .....++....... ..+.
T Consensus 181 ~~v~l~iwDtaGQ--e~~r~-------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGGQ--RNERR-------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECCS--TTGGG-------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCCc--hhhhH-------HHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 4578999999994 44433 35677999999999999871 12 22333444443321 2578
Q ss_pred CEEEEEeCCCCCChh-----------------------hHhHHHHHhhh--------c------CCCceEEEecCCCCCC
Q 016529 228 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEK--------F------TDVDEVIPVSAKYGHG 270 (388)
Q Consensus 228 piilV~NK~Dl~~~~-----------------------~~~~~~~~~~~--------~------~~~~~v~~vSA~~g~g 270 (388)
|++||+||+|+.... ...+...++.. . .....+++|||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984321 11222222121 0 1223568999999999
Q ss_pred HHHHHHHHHHhC
Q 016529 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
|+++|+++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.85 E-value=1.3e-08 Score=88.25 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCC-chHHHHH---HHhcccC--CCCCCEEEEEeCC-CCCChhhHhHHHHHhh--hcC
Q 016529 185 MMKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFT 255 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l---~~~~~~~--~~~~piilV~NK~-Dl~~~~~~~~~~~~~~--~~~ 255 (388)
+...|+.|+.++|++|||||+++.. ......+ ..++... ..+.|++|++||. |+...-...++.+.+. ...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 4456788899999999999998753 2234444 3444332 1578999999995 6764333333333222 123
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 256 ~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
..+.+..|||++|+|+.+-++||.+.+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 45689999999999999999999988754
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.83 E-value=6.3e-11 Score=108.34 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCC
Q 016529 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
.+...+..+|+++.|+|+.++.......+. ++ ++|.++|+||+|+.+......+..++... + .++ .+||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g-~~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-G-KRV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-T-CCE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-C-CeE-EEECCC
Confidence 345557899999999999977643221111 11 68999999999999876666666666543 2 357 999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEEE
Q 016529 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQ 341 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i~ 341 (388)
|.|+++|++.+.+.+ -+++..+.+++||||.+|.+.+... ++++....
T Consensus 85 ~~gi~~L~~~l~~~~--------------------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~ 138 (262)
T 3cnl_A 85 EPRKVLLKKLSFDRL--------------------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ 138 (262)
T ss_dssp SCHHHHHHHHCCCTT--------------------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC
T ss_pred CcCHHHHHHHHHHhh--------------------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE
Confidence 999999988876543 0334567788888887776553222 22111110
Q ss_pred EEEEEeeCCeeeEEEecCChh
Q 016529 342 VEIVVEKNSQKIILIGKGGKA 362 (388)
Q Consensus 342 ~~~~~e~~~q~~~vig~~g~~ 362 (388)
.-..+....+++++|-.
T Consensus 139 ----~~~~~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 139 ----WFSLENGVKILDTPGIL 155 (262)
T ss_dssp ----EEECTTSCEEESSCEEC
T ss_pred ----EEEeCCCEEEEECCCcc
Confidence 11123467889999854
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.76 E-value=5.9e-09 Score=96.22 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=39.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+++|.||||||||+|+|++.+...++..|++|++...... +..+.++||||+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWP 178 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCS
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCC
Confidence 456899999999999999999999987778889999987653322 347899999998643
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.73 E-value=5.8e-08 Score=94.48 Aligned_cols=147 Identities=16% Similarity=0.242 Sum_probs=82.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce-------------EEeEEEE----------------Ee
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI----------------CS 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t-------------~~~~~~~----------------~~ 159 (388)
...|+++|.+|+||||++.+|. |.++..+...+... ....... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999886 55554444332210 0000000 01
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016529 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
..++.++|+||||..+.....+ ..+ ..+.. ...+|.+++|+|++.+... .... ..+.. .-.+..+|+||+|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm-~el-~~i~~-~~~pd~vlLVvDA~~gq~a-~~~a-~~f~~--~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALI-EEM-KQISN-VIHPHEVILVIDGTIGQQA-YNQA-LAFKE--ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHH-HHH-HHHHH-HHCCSEEEEEEEGGGGGGH-HHHH-HHHHH--SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHH-HHH-HHHHH-hhcCceEEEEEeCCCchhH-HHHH-HHHHh--hCCCeEEEEECCCCc
Confidence 1347899999999754332222 111 12222 3368999999999875332 2222 22222 234567999999987
Q ss_pred ChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHH
Q 016529 240 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
..... ....... .+ .|+..++. |+++++|
T Consensus 253 ~~gG~--~ls~~~~-~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AKGGG--ALSAVAA-TG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSHHH--HHHHHHT-TC-CCEEEEEC--SSSTTCE
T ss_pred ccccH--HHHHHHH-HC-CCEEEEEc--CCChHHh
Confidence 54322 1222222 22 37777764 7777664
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.70 E-value=1.5e-08 Score=102.15 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=42.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE-------eCCCeeEEEEeCCCCcc
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIE 175 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~liDtpG~~~ 175 (388)
+..+|+|+|.||||||||+|+|+|....+ ..+++|+....+.+ ...+..+.++||||+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 44589999999999999999999987532 33333333222222 23567899999999864
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.66 E-value=5e-08 Score=90.96 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=62.4
Q ss_pred hhhccccEEEEEEeCCCCC-c--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhhcCCCceEEEec
Q 016529 191 SAGINADCIVVLVDACKAP-E--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~-~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~vS 264 (388)
.+++++|++++|+|++++. . ..+.|+. .+.. .++|+++|+||+|+.+... .......+... + .+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~-~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g-~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLV-VYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-G-YDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-T-CEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHH-HHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-C-CeEEEEE
Confidence 4689999999999999764 2 2234443 3344 6799999999999987652 33444444443 3 4899999
Q ss_pred CCCCCCHHHHHHHHHH
Q 016529 265 AKYGHGVEDIRDWILT 280 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~ 280 (388)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988754
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.54 E-value=2e-07 Score=84.78 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=67.2
Q ss_pred HhHHhhhccccEEEEEEeCCCCCc-hHHHHHH---HhcccC--CCCCCEEEEEeC-CCCCChhhHhHHHHHhh--hcCCC
Q 016529 187 KNVRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDV 257 (388)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~-~~~~~l~---~~~~~~--~~~~piilV~NK-~Dl~~~~~~~~~~~~~~--~~~~~ 257 (388)
..|+.|+.++|++|||||+++... .....+. .++... ..+.|++|++|| .|+...-...++.+.+. .....
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 457788999999999999987641 1222222 333221 157999999997 58865433333333322 12345
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016529 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 258 ~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
+.+..|||++|+|+.+-++||.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 689999999999999999999998864
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.52 E-value=3.5e-08 Score=90.05 Aligned_cols=58 Identities=36% Similarity=0.499 Sum_probs=38.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
.+++++|.+|+|||||+|+|.+.....+...+++|+....... +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccC
Confidence 4899999999999999999999887667788888876532221 247899999998653
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.43 E-value=5.2e-07 Score=87.70 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=78.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHh------CCceeeecCCC----------------CceEEeEE-------------EEEe
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTTRHRIL-------------GICS 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~----------------~~t~~~~~-------------~~~~ 159 (388)
...|+++|++|+||||++..|. |.++..+...+ +....... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4479999999999999999886 54443322111 10000000 0011
Q ss_pred CCCeeEEEEeCCCCcc--hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016529 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
..+..+.++||||..+ .....+ ..+. .+.... ..|.+++|+|+..+... ... ...+.. .-.+..+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm-~el~-~i~~~~-~pd~vlLVlDa~~gq~a-~~~-a~~f~~--~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLL-EEMK-EMYDVL-KPDDVILVIDASIGQKA-YDL-ASRFHQ--ASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHH-HHHH-HHHHHH-CCSEEEEEEEGGGGGGG-HHH-HHHHHH--HCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHH-HHHH-HHHHhh-CCcceEEEEeCccchHH-HHH-HHHHhc--ccCCcEEEEeccc
Confidence 2357899999999644 222222 2221 122222 56899999999865322 222 222221 2246789999999
Q ss_pred CCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016529 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
....... ........ ..|+..++. |++++
T Consensus 250 ~~a~~G~--als~~~~~--g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKGGG--ALSAVVAT--GATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCHHH--HHHHHHHH--TCEEEEEEC--CSSSS
T ss_pred ccccchH--HHHHHHHH--CCCEEEEEC--CCChH
Confidence 8643221 12222221 247777775 66654
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.36 E-value=8.3e-07 Score=90.52 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=43.5
Q ss_pred eeEEEEeCCCCcchhhhh----hhHHHHHhHHhhhccc-cEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCC
Q 016529 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGINA-DCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~----~~~~~~~~~~~~~~~a-d~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~ 236 (388)
..+.++|.||+....... ........+..++... .++++++++.... ......+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 468999999975432221 2233444455544443 5666666655333 2223334444444 578999999999
Q ss_pred CCCChh
Q 016529 237 DLIKPG 242 (388)
Q Consensus 237 Dl~~~~ 242 (388)
|+....
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998654
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.27 E-value=4.4e-06 Score=77.41 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=79.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce--------------EEeEEE---------------EEe
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG---------------ICS 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t--------------~~~~~~---------------~~~ 159 (388)
...++++|.+|+||||++..|. |.++..+...+... ...+.. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999886 44444333322110 000000 001
Q ss_pred CCCeeEEEEeCCCCcc--hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCC
Q 016529 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~ 236 (388)
..++.++++||||..+ ... .+...+ .... ....+|.+++|+|+..+ ....... ..+. ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~-~l~~el-~~i~-~~~~~d~vllVvda~~g-~~~~~~~-~~~~---~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEA-ALLEEM-KNIY-EAIKPDEVTLVIDASIG-QKAYDLA-SKFN---QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHH-HHHHHH-HHHH-HHHCCSEEEEEEEGGGG-GGHHHHH-HHHH---HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHH-HHHHHH-HHHH-HHhcCCEEEEEeeCCch-HHHHHHH-HHHH---hhCCCCEEEEeCC
Confidence 1567899999999754 211 111111 1111 23478999999998754 2222222 2222 2355 77899999
Q ss_pred CCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHH
Q 016529 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
|...... ........ .+ .|+..++ +|++++++
T Consensus 250 D~~~~~g--~~~~~~~~-~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGG--GALSAVAA-TG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHH--HHHHHHHT-TT-CCEEEEE--CSSSTTCE
T ss_pred CCCcchH--HHHHHHHH-HC-cCEEEEe--CCCChhhc
Confidence 9764322 12222222 22 3676665 57777653
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=6.4e-06 Score=80.31 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCC---------------ceeeecCCCCceEEeEEEEEeC-----------CCeeEE
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSG-----------PEYQMI 166 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~ 166 (388)
.+...|+|+|.+++|||+|+|+|+|. +....+.. ++++....+++.+ .+..+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEE
Confidence 45668999999999999999999864 22222222 2444444444433 246799
Q ss_pred EEeCCCCcch
Q 016529 167 LYDTPGIIEK 176 (388)
Q Consensus 167 liDtpG~~~~ 176 (388)
++||||+...
T Consensus 144 llDTeG~~~~ 153 (447)
T 3q5d_A 144 LMDTQGTFDS 153 (447)
T ss_dssp EEEEECCCSS
T ss_pred EEcCCccccc
Confidence 9999998543
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.94 E-value=1.7e-05 Score=77.39 Aligned_cols=118 Identities=22% Similarity=0.220 Sum_probs=67.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHh-------CCceeeecCCCCceE--------------EeEEE---------------EE
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTR--------------HRILG---------------IC 158 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~-------~~~~~~~~~~~~~t~--------------~~~~~---------------~~ 158 (388)
...|+++|.+|+||||++..|. |.++..+...+.... +.+.. ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999886 666655444332110 00000 01
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCC
Q 016529 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~D 237 (388)
...++.++|+||||..+.... +...+ ..+ ..+..+|.+++|+|+..+.. .......+ . ...+ .-+|+||+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~-l~~~L-~~~-~~~~~p~~vllVvda~~g~~-~~~~~~~f-~---~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEA-MMDEI-KQV-HASINPVETLFVVDAMTGQD-AANTAKAF-N---EALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHH-HHHHH-HHH-HHHSCCSEEEEEEETTBCTT-HHHHHHHH-H---HHSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHH-HHHHH-HHH-HHhhcCcceeEEeecchhHH-HHHHHHHH-h---ccCCCeEEEEecCC
Confidence 124678999999996432211 11111 111 22347899999999986532 22222222 1 1234 347999999
Q ss_pred CCC
Q 016529 238 LIK 240 (388)
Q Consensus 238 l~~ 240 (388)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 754
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.91 E-value=3.7e-06 Score=78.12 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=59.5
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhc---ccCCCCCCEEEEEeCCCCCChhh----HhHHHHHhhhcCCCceEEEec
Q 016529 192 AGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~---~~~~~~~piilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~v~~vS 264 (388)
.+.++|.+++|+|+..+..... .+.+++ .. .++|.++|+||+|+.+... ...+...+.... .+++.+|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g--~~v~~~s 157 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG--YDVYLTS 157 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT--CCEEECC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC--CeEEEEe
Confidence 4789999999999987664433 333333 23 6789999999999987644 455556554432 3799999
Q ss_pred CCCCCCHHHHHHHH
Q 016529 265 AKYGHGVEDIRDWI 278 (388)
Q Consensus 265 A~~g~gi~eL~~~i 278 (388)
|.+|.|+++|++.+
T Consensus 158 a~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 158 SKDQDSLADIIPHF 171 (307)
T ss_dssp HHHHTTCTTTGGGG
T ss_pred cCCCCCHHHHHhhc
Confidence 99999998876543
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.68 E-value=0.00017 Score=67.61 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=76.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC------ceeeecCCCCc-e----------EEeEEEEE------------------e
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-T----------RHRILGIC------------------S 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~------~~~~~~~~~~~-t----------~~~~~~~~------------------~ 159 (388)
.-.++++|++||||||+++.|.+. ++......... . +..+.... .
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 347999999999999999998742 22221111100 0 00000000 0
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016529 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
..+..+.++||+|..+.....+.. +.. .... -..|-.++++|+..+. .....+..+... -...++++||.|-.
T Consensus 209 ~~~~d~vliDtaG~~~~~~~l~~e-L~~-i~ra-l~~de~llvLDa~t~~-~~~~~~~~~~~~---~~it~iilTKlD~~ 281 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETNRNLMDE-MKK-IARV-TKPNLVIFVGDALAGN-AIVEQARQFNEA---VKIDGIILTKLDAD 281 (328)
T ss_dssp HHTCSEEEEEECCSCCTTTCHHHH-HHH-HHHH-HCCSEEEEEEEGGGTT-HHHHHHHHHHHH---SCCCEEEEECGGGC
T ss_pred hccchhhHHhhccchhHHHHHHHH-HHH-HHHH-hcCCCCEEEEecHHHH-HHHHHHHHHHHh---cCCCEEEEeCcCCc
Confidence 123457889999975433222222 211 1122 2478899999987653 222333322222 12347889999964
Q ss_pred ChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHH
Q 016529 240 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
... ........... .|+..++ +|++++++
T Consensus 282 a~~--G~~l~~~~~~~--~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 282 ARG--GAALSISYVID--APILFVG--VGQGYDDL 310 (328)
T ss_dssp SCC--HHHHHHHHHHT--CCEEEEE--CSSSTTCE
T ss_pred cch--hHHHHHHHHHC--CCEEEEe--CCCCcccc
Confidence 321 11222222221 3677776 77777553
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.64 E-value=0.00038 Score=64.55 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=64.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCc-e----------EEeEEEEEe------------------
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-T----------RHRILGICS------------------ 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~-t----------~~~~~~~~~------------------ 159 (388)
.-.|+|+|++|||||||++.|.+ .++......... . +..+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999863 222221111100 0 000001100
Q ss_pred CCCeeEEEEeCCCCcchhhhh---hhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCC
Q 016529 160 GPEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~ 236 (388)
..+..+.++||+|..+..... +........+......+.+++++|+..+.. ....+..+... .+ ..++++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~-~~~~~~~~~~~--~~-~t~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEA--VG-LTGVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHH--HC-CSEEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH-HHHHHHHHHHH--cC-CcEEEEECC
Confidence 113457899999975432222 221111112233446788899999876643 33333333222 12 357889999
Q ss_pred CCCC
Q 016529 237 DLIK 240 (388)
Q Consensus 237 Dl~~ 240 (388)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 8653
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.60 E-value=0.00015 Score=68.64 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=54.1
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhc---ccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhhcCCCceEEEecC
Q 016529 192 AGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~---~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.+.++|.+++|. +..+.... ..+.+++ .. .++|.+||+||+|+.+... ...+...+... + .+++.+||
T Consensus 127 i~anvD~v~iv~-a~~P~~~~-~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-G-~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVS-AILPELSL-NIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-G-YRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEE-ESTTTCCH-HHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-T-CCEEECBT
T ss_pred HHhcCCEEEEEE-eCCCCCCH-HHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-C-CcEEEEec
Confidence 367999999775 44443221 2232322 22 4688899999999998654 33444555432 2 37999999
Q ss_pred CCCCCHHHHHHHH
Q 016529 266 KYGHGVEDIRDWI 278 (388)
Q Consensus 266 ~~g~gi~eL~~~i 278 (388)
.+|.|+++|...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999988764
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.53 E-value=0.00018 Score=66.43 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=62.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHh-------CCceeeecCCCCc-e-EE-----------eEEE----------EEeCCCee
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQT-T-RH-----------RILG----------ICSGPEYQ 164 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~-------~~~~~~~~~~~~~-t-~~-----------~~~~----------~~~~~~~~ 164 (388)
...|+++|++|+||||++..|. |.++..+...+.. + .. .... .....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 3489999999999999999875 2233333222210 0 00 0000 00114568
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhc--cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016529 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+.++||||........+ ..+...+. ..+.+++|+|++........ +...+.. .+ ..-+|+||.|...
T Consensus 185 lvIiDT~G~~~~~~~~~-----~el~~~l~~~~~~~~~lVl~at~~~~~~~~-~~~~~~~--l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYI-----DELKETIPFESSIQSFLVLSATAKYEDMKH-IVKRFSS--VP-VNQYIFTKIDETT 253 (296)
T ss_dssp EEEEECCCCCTTSHHHH-----HHHHHHSCCCTTEEEEEEEETTBCHHHHHH-HTTTTSS--SC-CCEEEEECTTTCS
T ss_pred EEEEeCCCCChhhHHHH-----HHHHHHHhhcCCCeEEEEEECCCCHHHHHH-HHHHHhc--CC-CCEEEEeCCCccc
Confidence 99999999753321111 12222222 36788999998764322222 2222222 12 2346779999764
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.51 E-value=0.00049 Score=67.59 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=73.6
Q ss_pred EEEEEeCCCCChhHHHHHHhC------CceeeecCCCCce-----------EEeEEEEEe------------------CC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGICS------------------GP 161 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~t-----------~~~~~~~~~------------------~~ 161 (388)
.++|+|.+|||||||++.|.+ .++.+........ +..+..+.. ..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~ 374 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKAR 374 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhc
Confidence 799999999999999998864 2333221111110 000111110 13
Q ss_pred CeeEEEEeCCCCcchhhhhhhHH--HHHhHHhhh-ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016529 162 EYQMILYDTPGIIEKKIHMLDSM--MMKNVRSAG-INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~--~~~~~~~~~-~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
+..++++||+|..+.....+... +.+.++... ...+-+++|+|++.+.... .....+... .+. ..+|+||.|-
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-~~ak~f~~~--~~i-tgvIlTKLD~ 450 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEA--VGL-TGITLTKLDG 450 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-HHHHHHHHH--TCC-SEEEEECGGG
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-HHHHHHHhh--cCC-CEEEEEcCCC
Confidence 45689999999754433222211 111111111 1356789999988653222 222222222 222 3578999996
Q ss_pred CChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016529 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
... ............ .|+..+ -+|+++++
T Consensus 451 tak--gG~~lsi~~~~~--~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 451 TAK--GGVIFSVADQFG--IPIRYI--GVGERIED 479 (503)
T ss_dssp CSC--CTHHHHHHHHHC--CCEEEE--ECSSSGGG
T ss_pred ccc--ccHHHHHHHHHC--CCEEEE--ecCCChhh
Confidence 422 122233332222 255554 35667765
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.43 E-value=0.001 Score=62.03 Aligned_cols=117 Identities=18% Similarity=0.280 Sum_probs=62.3
Q ss_pred cEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce--------------EEeEEEEE-----------------
Q 016529 116 GYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILGIC----------------- 158 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t--------------~~~~~~~~----------------- 158 (388)
..|+++|.+|+||||++..|. +.++..+...+... +..+ ..+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l-~vip~~~~~~~p~~~~~~~l 184 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKV-DLVKANKLNADPASVVFDAI 184 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTE-EEECCSSTTCCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCc-eEEeCCCCCCCHHHHHHHHH
Confidence 379999999999999998775 33333222221100 0001 111
Q ss_pred ---eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh-----ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-E
Q 016529 159 ---SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-I 229 (388)
Q Consensus 159 ---~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-i 229 (388)
...++.++++||||..+.....+.. + ..+...+ ..+|.+++|+|+..+ ........... ...+ .
T Consensus 185 ~~~~~~~yD~VIIDTpg~l~~~~~l~~e-L-~~~~~vi~~~~p~~~d~vllVl~a~~~-~~~l~~~~~~~----~~~~i~ 257 (320)
T 1zu4_A 185 KKAKEQNYDLLLIDTAGRLQNKTNLMAE-L-EKMNKIIQQVEKSAPHEVLLVIDATTG-QNGVIQAEEFS----KVADVS 257 (320)
T ss_dssp HHHHHTTCSEEEEECCCCGGGHHHHHHH-H-HHHHHHHHTTCTTCCSEEEEEEEGGGT-HHHHHHHHHHT----TTSCCC
T ss_pred HHHHhcCCCEEEEcCCCcccccHHHHHH-H-HHHHHHHhcccCCCCceEEEEEECCCc-HHHHHHHHHHh----hcCCCc
Confidence 0235679999999964432112111 1 1111111 247899999999854 22222222221 2233 3
Q ss_pred EEEEeCCCCCC
Q 016529 230 LLVLNKKDLIK 240 (388)
Q Consensus 230 ilV~NK~Dl~~ 240 (388)
=+|+||+|...
T Consensus 258 GvVltk~d~~~ 268 (320)
T 1zu4_A 258 GIILTKMDSTS 268 (320)
T ss_dssp EEEEECGGGCS
T ss_pred EEEEeCCCCCC
Confidence 47899999753
No 240
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.36 E-value=0.00027 Score=61.10 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=66.2
Q ss_pred EEEEE-eCCCCChhHHHHHHh------CCceeeecCCCCceEEeE-------EEEEe-------------CCCeeEEEEe
Q 016529 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRI-------LGICS-------------GPEYQMILYD 169 (388)
Q Consensus 117 ~v~iv-G~~~~GKSSLln~l~------~~~~~~~~~~~~~t~~~~-------~~~~~-------------~~~~~~~liD 169 (388)
.|+|. +..|+||||+.-.|. |.++..+...+..+.... ...+. ...+.++++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46666 678899999987653 445444433332211000 00111 1347899999
Q ss_pred CCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccC---CCCCCEEEEEeCCCCC
Q 016529 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLI 239 (388)
Q Consensus 170 tpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~ 239 (388)
||+.... .....+..+|.+++++..+... .....+.+.++.. ..+.++.+|+|++|..
T Consensus 83 ~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 83 GAGSLSV-----------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp CCSSSSH-----------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCCCH-----------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 9985321 1223356799999999987655 5444555554432 2356789999999954
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=7.1e-05 Score=69.42 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=31.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCcc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~liDtpG~~~ 175 (388)
.++|+|++|||||||+|.|.+.......... ++|+.... .... .-.++||||+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 8999999999999999999986533222111 23332211 1111 247899999753
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.13 E-value=0.0016 Score=63.00 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce--------------EEeEEE------------E---EeC
Q 016529 116 GYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG------------I---CSG 160 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t--------------~~~~~~------------~---~~~ 160 (388)
..++++|.+|+||||++..|. +.++..+...+... .+.+.. . ...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~ 178 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence 368899999999999998875 23332222111110 000000 0 011
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016529 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
.++.++++||||..+.....+. .+ ..+.. ...+|.+++|+|+..+. ........+... . ...-+|+||+|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~-el-~~i~~-~~~pd~vlLVvDa~tgq-~av~~a~~f~~~--l-~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMG-EL-ARLKE-VLGPDEVLLVLDAMTGQ-EALSVARAFDEK--V-GVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHH-HH-HHHHH-HHCCSEEEEEEEGGGTT-HHHHHHHHHHHH--T-CCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHH-HH-HHhhh-ccCCceEEEEEeccchH-HHHHHHHHHHhc--C-CceEEEEeCcCCcc
Confidence 4567999999996432211111 11 11111 22688999999997652 222222222111 1 12467899999753
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.10 E-value=0.0018 Score=60.28 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+.+.++|+|..|+|||||+|.|.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3457999999999999999999854
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.01 E-value=0.0026 Score=58.89 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
..|+++|++|+||||++..|.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 379999999999999999875
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.01 E-value=0.00038 Score=65.88 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCce
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
.++|+|++|||||||+|.|.|...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 799999999999999999998654
No 246
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0028 Score=58.56 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=61.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCC------ceeeecCCCCc--------e---EEeEEEEEe-------------------C
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T---RHRILGICS-------------------G 160 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~------~~~~~~~~~~~--------t---~~~~~~~~~-------------------~ 160 (388)
.++++|++||||||+++.|.+. ++......... . +..+..+.. .
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~ 181 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE 181 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH
Confidence 7999999999999999988642 22222111100 0 000000000 1
Q ss_pred CCeeEEEEeCCCCcchhhhh---hhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016529 161 PEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
.+....++||.|..+..... +........+......+-+++|+|++.+..... .+..+... .+. .++++||.|
T Consensus 182 ~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~-~~~~~~~~--~g~-t~iiiThlD 257 (302)
T 3b9q_A 182 EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP-QAREFNEV--VGI-TGLILTKLD 257 (302)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH-HHHHHHHH--TCC-CEEEEECCS
T ss_pred cCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH-HHHHHHHh--cCC-CEEEEeCCC
Confidence 12346789999975432222 221111112223345777888999776554332 22222222 233 467889988
Q ss_pred CC
Q 016529 238 LI 239 (388)
Q Consensus 238 l~ 239 (388)
-.
T Consensus 258 ~~ 259 (302)
T 3b9q_A 258 GS 259 (302)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 247
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0052 Score=58.13 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCC------ceeeecCCCCc--------e---EEeEEEEEeC-------------------
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T---RHRILGICSG------------------- 160 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~------~~~~~~~~~~~--------t---~~~~~~~~~~------------------- 160 (388)
.++++|++||||||+++.|.+. ++......... + +..+..+...
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~ 238 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE 238 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHh
Confidence 7999999999999999988642 22222111100 0 0001111110
Q ss_pred CCeeEEEEeCCCCcchhhhh---hhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016529 161 PEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
.+....++||.|..+..... +........+......+-+++|+|++.+...... ...+... .+ ..++++||.|
T Consensus 239 ~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~--~g-~t~iiiThlD 314 (359)
T 2og2_A 239 EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEV--VG-ITGLILTKLD 314 (359)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHH--TC-CCEEEEESCT
T ss_pred CCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHh--cC-CeEEEEecCc
Confidence 12346899999985432222 2211111222234567778999997765543322 2222222 22 3467899988
Q ss_pred CCC
Q 016529 238 LIK 240 (388)
Q Consensus 238 l~~ 240 (388)
-..
T Consensus 315 ~~~ 317 (359)
T 2og2_A 315 GSA 317 (359)
T ss_dssp TCS
T ss_pred ccc
Confidence 653
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.95 E-value=0.00085 Score=62.11 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
..++++|++|||||||+|.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 379999999999999999998 54
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.89 E-value=0.00019 Score=62.14 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCce-eeecCCCCceEEe
Q 016529 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHR 153 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~-~~~~~~~~~t~~~ 153 (388)
.+...|+|+|++|||||||+++|.+... ......+.+|+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 3445799999999999999999986432 1233444455543
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.82 E-value=0.00087 Score=62.01 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCce
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
..++++|++|+|||||+|.|.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3799999999999999999998654
No 251
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.81 E-value=0.0047 Score=56.97 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccC--CCCCCEE-EEEeCCCC
Q 016529 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL-LVLNKKDL 238 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~--~~~~pii-lV~NK~Dl 238 (388)
.+.++++|||+..... .+...+..+|.+|+|++.....-.....+.+.++.. ..+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4679999998843211 112336789999999986532212222233333321 1445655 89999984
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.79 E-value=0.0028 Score=55.12 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=62.3
Q ss_pred EEEEE-eCCCCChhHHHHHHh------CCceeeecCCCCceEEeEE-------EEEe-------CCCeeEEEEeCCCC-c
Q 016529 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRIL-------GICS-------GPEYQMILYDTPGI-I 174 (388)
Q Consensus 117 ~v~iv-G~~~~GKSSLln~l~------~~~~~~~~~~~~~t~~~~~-------~~~~-------~~~~~~~liDtpG~-~ 174 (388)
.|+++ +..|+||||+.-.|. | ++..+...+..+..... ..+. ...+.++++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 35554 788999999987653 4 54444333321110000 0010 23468999999984 2
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016529 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
... ....+..+|.+|+++..+...-.....+.+.++.. .+.++.+|+|++|...
T Consensus 81 ~~~-----------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DED-----------LEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp SSH-----------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred cHH-----------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 211 22336689999999987643222222233333332 1567889999999764
No 253
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.74 E-value=0.00014 Score=71.65 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=54.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE----EEEeCCCeeEEEEeCCCCcchhhhhhhHH---HH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL----GICSGPEYQMILYDTPGIIEKKIHMLDSM---MM 186 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~liDtpG~~~~~~~~~~~~---~~ 186 (388)
+...|+++|.+|+||||+.++|...-.. ... .+..... ...........+||+.| ...+...... ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l 111 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAAL 111 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHH
Confidence 3448999999999999999998643210 000 1111000 00001112335678777 3221111111 12
Q ss_pred HhHHhhhccccEEEEEEeCCCCCchHHHHHHHhccc
Q 016529 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222 (388)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~ 222 (388)
.....++..+.+.++|+|+++........+...++.
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 223455666788899999998765444555544443
No 254
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.64 E-value=0.014 Score=52.55 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=42.4
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016529 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
.+.++++|||+.... .....+..+|.+|+++............+.+.++....+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 467999999984321 122335679999999988643323333444555554446788899999943
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.63 E-value=0.0069 Score=55.71 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCce--------------EEeEEE------------E---EeC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT--------------RHRILG------------I---CSG 160 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~t--------------~~~~~~------------~---~~~ 160 (388)
..++++|.+|+||||++..|.+ .++......+... ...... . ...
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~ 178 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3788999999999999988753 2332222111100 000000 0 001
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCC
Q 016529 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~ 239 (388)
.++.++++||||........+.. +.. .... -.+|.+++|+|+... ............ ..+ .-+|+||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~-l~~-~~~~-~~~~~~~lv~~~~~~-~~~~~~~~~~~~----~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGE-LAR-LKEV-LGPDEVLLVLDAMTG-QEALSVARAFDE----KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHH-HHH-HHHH-HCCSEEEEEEEGGGT-HHHHHHHHHHHH----HTCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHHH-HHH-Hhhh-cCCCEEEEEEeCCCc-HHHHHHHHHHhh----cCCCCEEEEECCCCC
Confidence 34679999999854332222211 111 1111 257888999998753 222222222211 123 45789999975
Q ss_pred C
Q 016529 240 K 240 (388)
Q Consensus 240 ~ 240 (388)
.
T Consensus 251 ~ 251 (295)
T 1ls1_A 251 A 251 (295)
T ss_dssp S
T ss_pred c
Confidence 4
No 256
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.34 E-value=0.0023 Score=56.78 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016529 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
..+.++++|||+..... ....+..+|.+|++++.+...-.....+.+.+... ....+.+|+|+.+
T Consensus 130 ~~yD~viiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL-----------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTTC-----------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccHH-----------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 45789999998743211 22336789999999987532222222333333332 2245789999998
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0018 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999763
No 258
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.27 E-value=0.0017 Score=55.11 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+++|+|++|+|||||++.+.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 259
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.26 E-value=0.0077 Score=58.43 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=19.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~ 136 (388)
....|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44478999999999999999654
No 260
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.23 E-value=0.13 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.12 E-value=0.00096 Score=57.10 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEeCCCCChhHHHHHHhCC
Q 016529 118 VAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~ 138 (388)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999743
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.08 E-value=0.0022 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999863
No 263
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.94 E-value=0.079 Score=46.57 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=41.1
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCC-CCCCEEEEEeCCCCCCh
Q 016529 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~ 241 (388)
+.++++|||+.... .....+..+|.+++++......-.....+.+.++... ....+.+|+|+++....
T Consensus 119 yD~viiD~p~~~~~-----------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 119 YDYIIVDFGASIDH-----------VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp CSEEEEEEESSCCT-----------THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred CCEEEEeCCCCCch-----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 56899999884321 1223367899999999876322222233344444322 23557899999986543
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.91 E-value=0.0047 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999875
No 265
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.90 E-value=0.0032 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999874
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.83 E-value=0.0032 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.81 E-value=0.0042 Score=53.83 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...|+|+|++|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998764
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.77 E-value=0.0045 Score=53.16 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 7999999999999999999764
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.77 E-value=0.005 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999998853
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.76 E-value=0.0037 Score=54.80 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999873
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.74 E-value=0.0047 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++++|++|+|||||++.+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEECCCCCCHHHHHHHHccC
Confidence 7999999999999999986643
No 272
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.72 E-value=0.0055 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 273
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.68 E-value=0.094 Score=48.12 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=36.7
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEE-EEEeCCCCC
Q 016529 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLI 239 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~ 239 (388)
.++|+|||+..... + .......+|.+|+|+..............+.++. .+.+++ +|+|++|..
T Consensus 215 D~VIIDtpp~~~~~-d---------~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVS-D---------AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQ--AGVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCT-H---------HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHH--TTCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhH-H---------HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHh--CCCCeEEEEEeCCccC
Confidence 58888888853211 0 1112456888888888765543333444444443 334433 778988854
No 274
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.66 E-value=0.005 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|||||||++.|.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999874
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.60 E-value=0.0067 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|+|++|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.57 E-value=0.006 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..|+|+|++|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 37999999999999999999865
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.55 E-value=0.0067 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.55 E-value=0.0067 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
-.++|+|+.|+|||||++.+.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 279
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.50 E-value=0.022 Score=52.06 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=38.8
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcc----cCCCCCCEE-EEEeCC
Q 016529 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG----DHKDKLPIL-LVLNKK 236 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~----~~~~~~pii-lV~NK~ 236 (388)
.+.++++|||+..... ....+..+|.+|+++............+.+.+. ....+.+++ +|+|+.
T Consensus 154 ~yD~IiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH-----------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH-----------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 3578999999843211 111244699999999876543222222222221 112456644 899999
Q ss_pred CCCC
Q 016529 237 DLIK 240 (388)
Q Consensus 237 Dl~~ 240 (388)
|...
T Consensus 223 ~~~~ 226 (298)
T 2oze_A 223 DTDS 226 (298)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9765
No 280
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.49 E-value=0.0071 Score=55.04 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999998853
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.48 E-value=0.0073 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.48 E-value=0.0073 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998853
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.47 E-value=0.0074 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.47 E-value=0.0074 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.46 E-value=0.0073 Score=54.69 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.44 E-value=0.0072 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998853
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.44 E-value=0.0077 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.43 E-value=0.0065 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 79999999999999999987743
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.42 E-value=0.0069 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998774
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.37 E-value=0.0085 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998853
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.36 E-value=0.0084 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 79999999999999999998853
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.35 E-value=0.0086 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|+.|+|||||++.|.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999985
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.35 E-value=0.008 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.|+|+|++||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998764
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.34 E-value=0.0087 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998853
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.32 E-value=0.0089 Score=53.79 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.31 E-value=0.0099 Score=52.88 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 297
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.30 E-value=0.009 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|+.|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.30 E-value=0.0067 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|+.|+|||||++.+.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999886
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.29 E-value=0.0092 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.25 E-value=0.0094 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998853
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.25 E-value=0.0095 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|+.|+|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 302
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.055 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|+.++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5999999999999999998753
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.19 E-value=0.0093 Score=53.82 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...++|+|++|+|||||++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 347999999999999999999874
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.19 E-value=0.012 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.+.++|+|++|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 347999999999999999999864
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.18 E-value=0.01 Score=53.31 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 306
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.059 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|+.++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998753
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.18 E-value=0.0096 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|++|||||||+++|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.16 E-value=0.011 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998853
No 309
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.16 E-value=0.011 Score=49.00 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEEEeCCCCChhHHHHHH
Q 016529 117 YVAVLGKPNVGKSTLANQM 135 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l 135 (388)
.|+|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999999998
No 310
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.15 E-value=0.11 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
....++|.|++|+|||+|+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 334799999999999999998865
No 311
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.14 E-value=0.16 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|++.|+||+|||+++.++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.13 E-value=0.0097 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|++|+|||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.12 E-value=0.0084 Score=55.34 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|++|+|||||++.|.|
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 899999999999999999875
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.10 E-value=0.0076 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 315
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.09 E-value=0.01 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|+|++|+||||+++.|.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.08 E-value=0.0094 Score=50.56 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999974
No 317
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.04 E-value=0.012 Score=48.78 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 318
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.02 E-value=0.08 Score=46.98 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=39.9
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCC-------CCCCEEEEEe
Q 016529 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-------DKLPILLVLN 234 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~-------~~~piilV~N 234 (388)
.+.++++|||+.... .....+..+|.+|+|++.....-.....+.+.+.... ...++.+|+|
T Consensus 113 ~yD~viiD~p~~~~~-----------~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N 181 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET-----------GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181 (260)
T ss_dssp TCSEEEEECCSSSSH-----------HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEE
T ss_pred CCCEEEEcCCCCCCH-----------HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEe
Confidence 578999999984221 1223366899999999876432222233334443321 1246789999
Q ss_pred CCCC
Q 016529 235 KKDL 238 (388)
Q Consensus 235 K~Dl 238 (388)
++|.
T Consensus 182 ~~~~ 185 (260)
T 3q9l_A 182 RYNP 185 (260)
T ss_dssp EECH
T ss_pred cCCc
Confidence 9984
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.00 E-value=0.016 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+...|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4458999999999999999988643
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.99 E-value=0.013 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 321
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.98 E-value=0.018 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 322
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.90 E-value=0.014 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999998864
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.90 E-value=0.0089 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=15.3
Q ss_pred EEEEEeCCCCChhHHHHHHh-CC
Q 016529 117 YVAVLGKPNVGKSTLANQMI-GQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~-~~ 138 (388)
.++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 79999999999999999998 65
No 324
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.85 E-value=0.006 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 325
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.85 E-value=0.0091 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.|.|-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 89999999999999999998853
No 326
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.81 E-value=0.018 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+++|.+||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.80 E-value=0.015 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|||||||++.+.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999998854
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.79 E-value=0.016 Score=48.43 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.79 E-value=0.014 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..|+|+|++|+||||+++.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 330
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.77 E-value=0.013 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...|+|+|++|+|||||++.|.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 347999999999999999998764
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.75 E-value=0.013 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999863
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.72 E-value=0.018 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4558999999999999999998754
No 333
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.72 E-value=0.018 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
.+.++|+|.+|+|||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999874
No 334
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.69 E-value=0.011 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++++|++|+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.65 E-value=0.021 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..|+|+|.+|+||||+++.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999875
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.64 E-value=0.018 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 337
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.63 E-value=0.062 Score=49.15 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.+++.|+||+|||+|+.++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577779999999999998864
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.63 E-value=0.017 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 79999999999999999998854
No 339
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.62 E-value=0.015 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
....|+|+|++|+|||||++.+++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3348999999999999999999764
No 340
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.62 E-value=0.018 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 341
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.61 E-value=0.015 Score=49.89 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 342
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.61 E-value=0.021 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 343
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.61 E-value=0.017 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998854
No 344
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.59 E-value=0.021 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
...|+|+|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3479999999999999999886
No 345
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.079 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 346
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.11 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|+.++.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 6999999999999999998753
No 347
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.55 E-value=0.02 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|++||||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.54 E-value=0.02 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|+|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 349
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.54 E-value=0.019 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 79999999999999999998853
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.52 E-value=0.019 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|++|+||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.51 E-value=0.025 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 444899999999999999998853
No 352
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.50 E-value=0.02 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.49 E-value=0.019 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|||||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 79999999999999999998854
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.49 E-value=0.019 Score=50.69 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|++|+|||||++.+.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999999873
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.49 E-value=0.019 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999998854
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.46 E-value=0.02 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|+|++|+|||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999876
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.43 E-value=0.023 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999853
No 358
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.42 E-value=0.02 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 79999999999999999998854
No 359
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.14 Score=49.35 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|+.++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 6999999999999999999754
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.40 E-value=0.019 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|+.|+|||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998866
No 361
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.39 E-value=0.017 Score=47.25 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 362
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.022 Score=48.13 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
..|+|.|.+||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999875
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.38 E-value=0.021 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 79999999999999999998853
No 364
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.38 E-value=0.1 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+++|.+|+||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999865
No 365
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.38 E-value=0.12 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..++|.|+||+|||+|+.++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999864
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.36 E-value=0.023 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 367
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.35 E-value=0.02 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999874
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.32 E-value=0.022 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998854
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.31 E-value=0.019 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++.|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.31 E-value=0.027 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999998863
No 371
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.31 E-value=0.025 Score=47.63 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
..|+++|.+||||||+...|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 372
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.31 E-value=0.022 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 373
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.30 E-value=0.028 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
...|+|+|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999885
No 374
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.29 E-value=0.023 Score=47.83 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
..|+++|.+||||||+.+.|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999886
No 375
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.28 E-value=0.17 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|++.|+||+|||+|+.++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3799999999999999999875
No 376
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.26 E-value=0.032 Score=50.77 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=23.3
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCC
Q 016529 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (388)
+.++++|||+.... .....+..+|.+|+++...
T Consensus 104 yD~viiD~p~~~~~-----------~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSA-----------ITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCH-----------HHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccH-----------HHHHHHHHCCEEEEEEcCC
Confidence 56899999984321 1223467899999999875
No 377
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.23 E-value=0.024 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.|.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 79999999999999999998853
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.20 E-value=0.034 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=19.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~ 136 (388)
+...|+|.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33479999999999999999886
No 379
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.19 E-value=0.025 Score=48.98 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=18.5
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
+|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.19 E-value=0.024 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|+|.+|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998764
No 381
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.17 E-value=0.016 Score=54.92 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-+++|+|++|+|||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999874
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.15 E-value=0.035 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.13 E-value=0.03 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+++|++||||||+..+|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999863
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.12 E-value=0.028 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998853
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.07 E-value=0.03 Score=47.82 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 386
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.07 E-value=0.12 Score=44.10 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998864
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.06 E-value=0.027 Score=48.75 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=18.5
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
+|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.04 E-value=0.027 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+...|+|.|..|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3347999999999999999998764
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.04 E-value=0.023 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...++|+|++|+|||||++.|.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.03 E-value=0.018 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 79999999999999999999854
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.02 E-value=0.037 Score=46.66 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+++|.+|+||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 334799999999999999998864
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.02 E-value=0.03 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999885
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.00 E-value=0.023 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=15.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999885
No 394
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.00 E-value=0.021 Score=51.88 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEeCCCCChhHHHHHHhCC
Q 016529 118 VAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~ 138 (388)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.99 E-value=0.04 Score=46.36 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.95 E-value=0.032 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...+|+|+.|+|||||+.+|.+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999853
No 397
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.23 Score=45.92 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+.+.+.|.|+||+|||++++.++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998864
No 398
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.93 E-value=0.17 Score=47.38 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..++|.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 399
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.88 E-value=0.093 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..+++.|+||+|||++++++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.85 E-value=0.027 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+...++|+|++|+|||||++.+++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999864
No 401
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.82 E-value=0.12 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|++.|+||+|||+|+.++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999999864
No 402
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.80 E-value=0.037 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..++|.|++|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988653
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.77 E-value=0.034 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 404
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.74 E-value=0.017 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|++|+|||||++.+.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998854
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.70 E-value=0.03 Score=46.72 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 406
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.69 E-value=0.026 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.68 E-value=0.03 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|||||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999873
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.63 E-value=0.032 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
.|+|+|.+|+||||+...|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999998874
No 409
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.63 E-value=0.04 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 410
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.051 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|+.++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.60 E-value=0.034 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
...|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999885
No 412
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.58 E-value=0.04 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+..+|+|+|.+||||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999999863
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.57 E-value=0.041 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+++|.+|+||||+++.|.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 414
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.57 E-value=0.038 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.50 E-value=0.041 Score=47.63 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 416
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.36 E-value=0.036 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+++|.||+||||+...|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998854
No 417
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.36 E-value=0.032 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998754
No 418
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.35 E-value=0.058 Score=47.10 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|.|+|+|||||+|....|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999988863
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.34 E-value=0.021 Score=49.19 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 420
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.34 E-value=0.044 Score=46.23 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 421
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.28 E-value=0.047 Score=47.29 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.26 E-value=0.042 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 423
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.24 E-value=0.059 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~ 136 (388)
+...|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999986
No 424
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.055 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999854
No 425
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.17 E-value=4.2 Score=37.81 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=45.5
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCE-EEEEeCCCCCCh--hh-------HhHHHHHhhhcCCCc--eEEEe
Q 016529 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP--GE-------IAKKLEWYEKFTDVD--EVIPV 263 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pi-ilV~NK~Dl~~~--~~-------~~~~~~~~~~~~~~~--~v~~v 263 (388)
.+.+++|.......-.........++. .+.|+ -+|+|++..... .. .....+.+....+.. ..++.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~--~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQK--YGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHH--CCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 467888876543322333444455555 56776 588999886521 10 112222333322222 34667
Q ss_pred cCCCCCCHHHHHHHHHHhC
Q 016529 264 SAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l 282 (388)
....-.|++.|........
T Consensus 315 ~~~e~~g~~~L~~~~~~l~ 333 (349)
T 3ug7_A 315 LRTEAKGIETLKQIAKILY 333 (349)
T ss_dssp CSSCSCSHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHc
Confidence 7777788888765544433
No 426
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.15 E-value=0.036 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 427
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.037 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..+++|+|+.|+|||||++.|.|.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 348999999999999999998764
No 428
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.11 E-value=0.036 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.|+|+|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998763
No 429
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.11 E-value=0.18 Score=47.64 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
+.++|+|+.|+|||||++++.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999976
No 430
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.09 E-value=0.051 Score=47.02 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|+|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 431
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.06 E-value=0.053 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998853
No 432
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.04 E-value=0.036 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998764
No 433
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.04 E-value=0.048 Score=45.15 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
.|+|.|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999875
No 434
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.02 E-value=0.046 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998853
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.00 E-value=0.056 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
.+..+|+|+.|+|||||+.++.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999975
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.96 E-value=0.05 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 437
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.95 E-value=0.043 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
+.-+++|+|++|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33489999999999999999998753
No 438
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.94 E-value=0.061 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998853
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.85 E-value=0.055 Score=47.22 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
.|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 440
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.83 E-value=0.064 Score=46.71 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...++|.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 441
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.81 E-value=0.12 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..++|.|++|+|||+++.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 442
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.81 E-value=0.059 Score=44.51 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
.|+|.|.+||||||+...|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999874
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.80 E-value=0.055 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|+|||||++.+.|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 89999999999999999998853
No 444
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.79 E-value=0.047 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...++|.|++|+|||+|+.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998864
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.78 E-value=0.062 Score=47.46 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016529 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
...|+|.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999886
No 446
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.71 E-value=0.15 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|++|+|||+|+.++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 447
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.71 E-value=0.068 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+++|.+|+||||+.+.|.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.61 E-value=0.048 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
-.++|+|++|+|||||++.|.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999875
No 449
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.57 E-value=0.06 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|+|++|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 450
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.52 E-value=0.064 Score=46.21 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.50 E-value=0.055 Score=54.73 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|+|||||++.+.|-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 89999999999999999998853
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.064 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 89999999999999999999854
No 453
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.45 E-value=0.06 Score=54.30 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|+|||||++.+.|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 454
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.45 E-value=0.051 Score=47.63 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-.++|+|++|+|||||+..+.+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999998863
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.44 E-value=0.059 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|+|||||++.+.|-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 89999999999999999998853
No 456
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.39 E-value=0.17 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|++|+|||+|+.++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 457
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.38 E-value=0.088 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 334799999999999999998864
No 458
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.33 E-value=0.079 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..++|.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 459
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.32 E-value=4.9 Score=36.87 Aligned_cols=81 Identities=10% Similarity=0.020 Sum_probs=42.1
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCE-EEEEeCCCCCCh--hh-------HhHHHHHhhhcCCCce--EEEec
Q 016529 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP--GE-------IAKKLEWYEKFTDVDE--VIPVS 264 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pi-ilV~NK~Dl~~~--~~-------~~~~~~~~~~~~~~~~--v~~vS 264 (388)
+.+++|...............+.++. .+.|+ -+|+|++.-... .. .....+.+....+..+ .++.-
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~--~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEK--YSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHH--CCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 47888876643222333344445555 56776 588999876421 11 1122222332222223 35566
Q ss_pred CCCCCCHHHHHHHHH
Q 016529 265 AKYGHGVEDIRDWIL 279 (388)
Q Consensus 265 A~~g~gi~eL~~~i~ 279 (388)
+..-.|++.|.....
T Consensus 301 ~~e~~g~~~L~~~~~ 315 (324)
T 3zq6_A 301 KKEAKGIETLEKIAE 315 (324)
T ss_dssp SSCSCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 666678877765543
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.27 E-value=0.059 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+.-+++|+|++|+|||||++.|.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3348999999999999999999875
No 461
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.25 E-value=0.08 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
....|+|+|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998864
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.25 E-value=0.086 Score=46.34 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998864
No 463
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.23 E-value=0.077 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+++|++|+|||+|+.++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999999875
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.23 E-value=0.11 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999997643
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.23 E-value=0.071 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 79999999999999999998854
No 466
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.15 E-value=0.074 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 467
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.12 E-value=0.052 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|+|||||++.+.|--
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 89999999999999999998753
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.07 E-value=0.073 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
No 469
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.03 E-value=0.26 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..|+|.|+||+|||+|+.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 470
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.00 E-value=0.46 Score=43.58 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=48.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
.+.+.|++|+|||+++.++...-. ..+.-++..... ...+...........-...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~----------------------~~~~~i~~~~~~---~~~i~~~~~~~~~~~~~~~ 104 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVN----------------------ADMMFVNGSDCK---IDFVRGPLTNFASAASFDG 104 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTT----------------------EEEEEEETTTCC---HHHHHTHHHHHHHBCCCSS
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC----------------------CCEEEEcccccC---HHHHHHHHHHHHhhcccCC
Confidence 456667799999999999854210 123333333211 1122221111111111122
Q ss_pred cEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016529 197 DCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 197 d~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
..-++++|--+... .....+...+.....+.++|+..|..+..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 55667777655543 23344444444333456788888876643
No 471
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.99 E-value=0.17 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|+||+|||+++.++..
T Consensus 240 ~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 472
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.99 E-value=0.25 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|++.|+||+|||+|++++.+.
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.97 E-value=0.064 Score=54.19 Aligned_cols=23 Identities=48% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|+|||||++.+.|--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 89999999999999999998753
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.85 E-value=0.083 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 475
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.70 E-value=0.21 Score=43.71 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=17.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHh
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~ 136 (388)
+...+++.|++|+||||++-.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHH
Confidence 33468888999999999876554
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.69 E-value=0.11 Score=43.52 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCce
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
-|+|.|++|+||||+.-.|...-.
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCC
Confidence 599999999999999999875443
No 477
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.66 E-value=0.12 Score=47.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
...++|.|+||+|||+++.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987653
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.62 E-value=0.11 Score=44.40 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 479
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.59 E-value=0.085 Score=45.56 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.7
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016529 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
.+++.|+||+|||+++.++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999998887765
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.50 E-value=0.095 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 481
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.46 E-value=0.1 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|.|.|++|+|||+++.++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.42 E-value=0.081 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
-.++|+|++|+|||||+..+.+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 483
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.37 E-value=0.11 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=19.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016529 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
.+.|+|+|++|||||+|...|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 34689999999999999999863
No 484
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.25 E-value=0.08 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=17.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC
Q 016529 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
+...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 485
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.24 E-value=0.12 Score=44.65 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 486
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.19 E-value=0.11 Score=47.37 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|+|+|.+|+||||+.++|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 487
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.14 E-value=0.15 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..++++|++|+|||+++.++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998865
No 488
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.06 E-value=0.46 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
-|+++|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
No 489
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.11 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCce
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
.++|+|+.|+|||||++.|.|...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999998643
No 490
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.03 E-value=0.13 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.8
Q ss_pred CccEEEEEeCCCCChhHHHHHH
Q 016529 114 KSGYVAVLGKPNVGKSTLANQM 135 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l 135 (388)
+..+|+++|.+|+|||||+.++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4569999999999999999886
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.99 E-value=0.13 Score=44.32 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChhHHHHHHh
Q 016529 116 GYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~ 136 (388)
+..+|+|+.|+||||++.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999874
No 492
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.83 E-value=0.087 Score=49.14 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 493
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.72 E-value=0.42 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..++++|+||+|||+++..+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 494
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.72 E-value=0.13 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999887753
No 495
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.69 E-value=0.11 Score=41.93 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.|.+.|++|+|||+++.++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999987653
No 496
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.55 E-value=0.14 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|.|++|+|||||++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 497
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.45 E-value=0.16 Score=46.91 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=23.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecC
Q 016529 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN 145 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~ 145 (388)
-|+++|++|+||||++..|+......+++
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 69999999999999999998654333333
No 498
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.44 E-value=0.16 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016529 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.|++.|++|+|||+|++++.+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999875
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.44 E-value=0.18 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 500
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.43 E-value=0.15 Score=47.78 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016529 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..++|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
Done!