Query 016531
Match_columns 388
No_of_seqs 236 out of 1231
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 6E-105 1E-109 828.7 20.6 317 57-376 115-462 (620)
2 COG3000 ERG3 Sterol desaturase 99.8 1.3E-19 2.8E-24 175.4 8.0 136 62-214 92-238 (271)
3 KOG0873 C-4 sterol methyl oxid 99.6 1.2E-16 2.6E-21 155.3 5.7 137 59-212 112-259 (283)
4 PF04116 FA_hydroxylase: Fatty 99.5 3.2E-15 6.9E-20 123.7 3.6 106 71-189 3-110 (114)
5 KOG0872 Sterol C5 desaturase [ 99.4 1.9E-13 4.2E-18 132.3 5.7 134 59-213 121-263 (312)
6 KOG0874 Sphingolipid hydroxyla 99.0 1.8E-11 3.9E-16 115.9 -2.6 131 73-212 126-265 (287)
7 PRK14982 acyl-ACP reductase; P 96.9 0.0023 5E-08 64.9 7.5 113 256-371 34-164 (340)
8 PLN02434 fatty acid hydroxylas 90.7 0.34 7.4E-06 47.2 4.6 120 81-212 95-229 (237)
9 PRK07424 bifunctional sterol d 74.7 10 0.00022 39.6 7.4 49 78-126 17-76 (406)
10 PLN02601 beta-carotene hydroxy 73.3 15 0.00033 36.9 7.8 49 59-107 126-175 (303)
11 PF01661 Macro: Macro domain; 67.9 25 0.00055 28.7 7.0 63 259-322 43-105 (118)
12 PF13580 SIS_2: SIS domain; PD 51.6 13 0.00029 32.4 2.7 25 292-316 112-136 (138)
13 PF10991 DUF2815: Protein of u 43.4 47 0.001 31.3 5.1 70 279-348 27-111 (181)
14 cd05014 SIS_Kpsf KpsF-like pro 41.7 32 0.00069 28.7 3.4 31 291-321 55-85 (128)
15 cd05561 Peptidases_S8_4 Peptid 38.5 42 0.0009 31.9 4.1 59 296-354 106-198 (239)
16 PF13278 DUF4066: Putative ami 38.0 28 0.00061 30.6 2.7 64 292-355 75-155 (166)
17 PRK09929 hypothetical protein; 35.4 53 0.0011 27.8 3.7 37 299-335 54-91 (91)
18 cd04795 SIS SIS domain. SIS (S 35.3 40 0.00087 25.8 2.9 22 296-317 60-81 (87)
19 TIGR02530 flg_new flagellar op 34.6 30 0.00066 29.5 2.2 23 297-320 38-60 (96)
20 KOG4701 Chitinase [Cell wall/m 33.8 39 0.00085 35.8 3.2 71 298-371 91-190 (568)
21 PRK15062 hydrogenase isoenzyme 33.5 15 0.00034 38.0 0.3 69 275-345 37-116 (364)
22 TIGR01445 intein_Nterm intein 31.8 56 0.0012 25.3 3.2 56 293-351 15-73 (81)
23 cd08345 Fosfomycin_RP Fosfomyc 31.8 1E+02 0.0022 24.4 4.8 46 297-347 66-112 (113)
24 KOG0539 Sphingolipid fatty aci 31.6 37 0.0008 33.1 2.5 124 81-213 95-233 (240)
25 cd05006 SIS_GmhA Phosphoheptos 30.1 49 0.0011 29.7 3.0 27 293-319 111-137 (177)
26 cd03137 GATase1_AraC_1 AraC tr 29.5 63 0.0014 28.9 3.5 60 295-354 81-157 (187)
27 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.0 56 0.0012 27.1 2.9 29 292-320 55-83 (126)
28 PF07338 DUF1471: Protein of u 28.8 71 0.0015 24.3 3.2 15 299-313 20-35 (56)
29 TIGR00762 DegV EDD domain prot 28.7 46 0.00099 32.4 2.7 56 297-352 65-120 (275)
30 PRK13912 nuclease NucT; Provis 28.0 75 0.0016 28.9 3.8 49 297-347 59-109 (177)
31 PF07492 Trehalase_Ca-bi: Neut 27.9 26 0.00056 24.0 0.6 11 307-317 19-29 (30)
32 PF14488 DUF4434: Domain of un 27.7 60 0.0013 29.7 3.1 25 293-317 61-86 (166)
33 PF14542 Acetyltransf_CG: GCN5 27.5 67 0.0014 25.6 3.0 22 295-316 40-61 (78)
34 cd03400 Band_7_1 A subgroup of 27.2 44 0.00095 28.2 2.0 41 278-318 66-107 (124)
35 PF07894 DUF1669: Protein of u 27.2 56 0.0012 32.9 3.0 60 290-351 134-218 (284)
36 KOG1794 N-Acetylglucosamine ki 26.8 29 0.00063 35.4 1.0 92 285-377 37-138 (336)
37 COG3623 SgaU Putative L-xylulo 26.7 62 0.0014 32.2 3.1 49 289-346 88-136 (287)
38 PHA03003 palmytilated EEV memb 26.6 65 0.0014 33.0 3.5 57 292-348 58-127 (369)
39 PRK09850 pseudouridine kinase; 26.6 63 0.0014 31.4 3.3 55 297-355 203-264 (313)
40 cd07476 Peptidases_S8_thiazoli 26.4 98 0.0021 30.0 4.5 58 297-354 125-218 (267)
41 PF08285 DPM3: Dolichol-phosph 26.1 38 0.00082 28.5 1.4 25 289-313 67-91 (91)
42 cd01469 vWA_integrins_alpha_su 25.7 52 0.0011 29.5 2.3 22 300-321 122-143 (177)
43 cd05017 SIS_PGI_PMI_1 The memb 25.3 72 0.0016 26.8 3.0 27 292-318 52-78 (119)
44 TIGR03127 RuMP_HxlB 6-phospho 25.2 70 0.0015 28.6 3.0 33 288-320 77-109 (179)
45 cd05005 SIS_PHI Hexulose-6-pho 25.1 70 0.0015 28.8 3.0 28 292-319 84-111 (179)
46 cd05710 SIS_1 A subgroup of th 25.1 87 0.0019 26.4 3.5 30 291-320 55-84 (120)
47 COG2388 Predicted acetyltransf 24.4 65 0.0014 27.5 2.5 42 275-318 38-80 (99)
48 cd08629 PI-PLCc_delta1 Catalyt 24.3 77 0.0017 31.5 3.3 46 300-360 32-77 (258)
49 cd08595 PI-PLCc_zeta Catalytic 24.2 73 0.0016 31.7 3.2 47 300-361 32-78 (257)
50 cd08630 PI-PLCc_delta3 Catalyt 24.1 75 0.0016 31.6 3.2 50 300-364 32-81 (258)
51 PF15250 Raftlin: Raftlin 24.0 76 0.0016 34.0 3.4 28 289-317 134-161 (457)
52 COG5014 Predicted Fe-S oxidore 23.4 24 0.00052 33.7 -0.3 19 3-22 27-45 (228)
53 COG5322 Predicted dehydrogenas 23.1 37 0.0008 34.5 0.9 68 290-360 87-156 (351)
54 cd03399 Band_7_flotillin Band_ 23.0 1E+02 0.0022 26.2 3.5 33 291-323 83-116 (128)
55 TIGR00696 wecB_tagA_cpsF bacte 22.8 68 0.0015 29.7 2.5 73 297-371 35-109 (177)
56 smart00506 A1pp Appr-1"-p proc 22.4 2.1E+02 0.0045 23.9 5.3 43 278-322 78-120 (133)
57 cd08599 PI-PLCc_plant Catalyti 22.4 99 0.0021 30.2 3.6 49 300-363 32-80 (228)
58 TIGR00075 hypD hydrogenase exp 22.3 33 0.00071 35.8 0.4 69 275-345 43-122 (369)
59 cd01480 vWA_collagen_alpha_1-V 22.3 71 0.0015 28.9 2.5 46 297-342 127-178 (186)
60 cd05013 SIS_RpiR RpiR-like pro 21.7 1.2E+02 0.0027 24.8 3.7 38 292-330 69-106 (139)
61 cd03138 GATase1_AraC_2 AraC tr 21.6 1E+02 0.0022 27.7 3.4 61 295-355 89-166 (195)
62 TIGR00441 gmhA phosphoheptose 21.5 82 0.0018 27.9 2.7 27 292-318 88-114 (154)
63 COG2313 IndA Uncharacterized e 21.5 71 0.0015 32.1 2.4 51 245-312 210-264 (310)
64 PF13480 Acetyltransf_6: Acety 21.5 1E+02 0.0022 25.3 3.1 29 293-321 110-138 (142)
65 cd08632 PI-PLCc_eta1 Catalytic 21.1 93 0.002 30.9 3.2 44 300-358 32-75 (253)
66 PRK00414 gmhA phosphoheptose i 20.6 1.1E+02 0.0023 28.5 3.4 29 293-321 121-149 (192)
67 COG4567 Response regulator con 20.4 61 0.0013 30.4 1.6 34 339-372 59-92 (182)
68 PF04227 Indigoidine_A: Indigo 20.4 41 0.00089 34.0 0.6 22 291-312 230-251 (293)
69 cd08631 PI-PLCc_delta4 Catalyt 20.1 1.1E+02 0.0023 30.5 3.4 46 300-360 32-77 (258)
70 PF14501 HATPase_c_5: GHKL dom 20.1 1.3E+02 0.0028 24.4 3.4 29 295-323 10-39 (100)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=6.3e-105 Score=828.68 Aligned_cols=317 Identities=68% Similarity=1.153 Sum_probs=297.3
Q ss_pred CCCCCchhhHHHHHHHHHHHhcchhhHHHHHHhhcChhhcccc--CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHH
Q 016531 57 GGTQFPIWRLDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLIT 134 (388)
Q Consensus 57 ~~~~lP~W~~~~~il~~LLh~l~vDf~yYW~HRllH~p~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~ 134 (388)
+++++|.|+++++++.+++|++++||+|||.||++|++++|++ ++||++++|+|+|+.++++.|++.+.+++++|+++
T Consensus 115 ~~~~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLll 194 (620)
T PLN02869 115 GASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLT 194 (620)
T ss_pred hhhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999666655 99999999999999864556888888888899988
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcc-------cC----------------
Q 016531 135 TALTGAGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT-------AS---------------- 191 (388)
Q Consensus 135 ~~l~g~~s~~~l~~yll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~Hr-------tN---------------- 191 (388)
..+++..|+.++++|+++.+++++++|||+|++|+++++.+|+++|+++||+||+ +|
T Consensus 195 li~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~fd~NYGlfF~~WDrLFGT~d 274 (620)
T PLN02869 195 TIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMD 274 (620)
T ss_pred HhhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhccCCcCcccchHHHHhccCCCC
Confidence 7777777888999999999999999999999999999888899999999999999 66
Q ss_pred ------cCCCCCCCCCCCCeEEeeccCCccccchhhhhhhhhcCCCCCcCCcchhhhhhhHHHHHHHHHHHHhcceeEEe
Q 016531 192 ------YAAPGELLDDSLDVVYLTHLTTPESIYHMRLGLASLASKPHQHASSEWYKWLLWPVTLFSMMITWIYGRTFVVE 265 (388)
Q Consensus 192 ------y~~~~~~~~e~~D~VfltH~~~~~s~~h~~~g~~s~~s~p~~~~~~~~~l~~~wp~~~~~~~~~w~~~~~f~~~ 265 (388)
|++++++.+++||+|||||++|++|+||+|+|+||+||.|| +++||||||||+|+++|+++|+|||||++|
T Consensus 275 ~~s~~l~e~~~~~~~~~pd~V~l~H~t~~~s~~h~~~~~~s~as~p~---~~~~~l~~~wp~~~~~m~~~w~~~~~f~~~ 351 (620)
T PLN02869 275 KSSDTLYEKSLKRPEEIPDVVHLTHLTTPDSIYHLRLGFASLASKPY---ISKWYLRLMWPVTSWSMMLTWIYGRTFVLE 351 (620)
T ss_pred CCchhHHHHhhcCcccCCCEEEEeccCCHHHhhccchHHHHhccCCc---cchhHHHHHHHHHHHHHHHHHHhCCceEee
Confidence 45555555668999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ecccCcceeeeEEEeccCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeec
Q 016531 266 RNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVD 345 (388)
Q Consensus 266 ~~~~~~~~~qtw~ipr~~~qy~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~ 345 (388)
+|+|||+++|||+||||||||++|+++|+||++|||||+||||+||||+|||+|||||+|||||||||+|||+|||||||
T Consensus 352 ~~~~~~~~~~tw~vpr~~~qy~~~~~~~~in~~Ie~ail~ad~~Gvkv~sLg~LNk~~~LN~~G~l~v~k~p~L~vrvv~ 431 (620)
T PLN02869 352 RNRFNKLNLQTWVIPKYKIQYLLKWQNESINSLIEEAILEADKRGVKVLSLGLLNQGEELNRYGELYIHRNPKLKIKVVD 431 (620)
T ss_pred eeeccceeeeEEEeccccccccCchhhhhHHHHHHHHHHHHHhcCCEEEechhcchhhhhcCCceEeeecCCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceehhhhhccCCCCCceeeeeeccccccc
Q 016531 346 GSSLAVAVLTNSIPAEQPKWSLEAFSLRLLM 376 (388)
Q Consensus 346 g~tl~aavvl~~ip~~~~~~~l~~~~~~~~~ 376 (388)
||||||||||||||+|||||||||+.+.+-.
T Consensus 432 G~tLtaAvvln~ip~~~~~vfl~G~~sK~~r 462 (620)
T PLN02869 432 GSSLAVAVVLNSIPKGTTQVLFRGNLSKVAY 462 (620)
T ss_pred CCchHHHHHHHhcCCCCceEEEecCccHHHH
Confidence 9999999999999999999999999987643
No 2
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.79 E-value=1.3e-19 Score=175.43 Aligned_cols=136 Identities=26% Similarity=0.341 Sum_probs=108.3
Q ss_pred chhhHHHHHHHHHHHhcchhhHHHHHHhhcCh-hhcccc-CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHHHHhhc
Q 016531 62 PIWRLDGVILMALLHAGPVEFVYYWLHRALHH-HYLYSR-SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTG 139 (388)
Q Consensus 62 P~W~~~~~il~~LLh~l~vDf~yYW~HRllH~-p~Lwr~-svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~~~l~g 139 (388)
+.+...++++++++. |+++||.||++|+ +.+|+. ++||++++++++|+.|.||+|.++......+|+.++.
T Consensus 92 ~~~~~l~~~~~~~~~----D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~--- 164 (271)
T COG3000 92 PLPFALQLLLAFLFL----DLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLG--- 164 (271)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhc---
Confidence 344455677777777 9999999999999 888888 9999999999999999999999998776666654432
Q ss_pred ccchhHHHHHHHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcc---------cCcCCCCCCCCCCCCeEEeec
Q 016531 140 AGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT---------ASYAAPGELLDDSLDVVYLTH 210 (388)
Q Consensus 140 ~~s~~~l~~yll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~Hr---------tNy~~~~~~~~e~~D~VfltH 210 (388)
.+..++.++.++..+.+.++|||++. | +. +++++++++||++|+ +||+..+. .||++|+|.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~H~~~~~-~-~~---~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~----~WDrlFGT~ 234 (271)
T COG3000 165 -LSPVAVALLFIFLLFWAVLIHSNLDL-P-LP---LGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLT----FWDRLFGTY 234 (271)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhcCccc-c-CC---cccceeeecCchHHHHhccCCCCCCcchhhhH----HHHHHcccC
Confidence 45677888889999999999999985 3 22 357778899999999 33333333 999999996
Q ss_pred cCCc
Q 016531 211 LTTP 214 (388)
Q Consensus 211 ~~~~ 214 (388)
...+
T Consensus 235 ~~~~ 238 (271)
T COG3000 235 HPPD 238 (271)
T ss_pred CCCc
Confidence 6643
No 3
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.64 E-value=1.2e-16 Score=155.27 Aligned_cols=137 Identities=23% Similarity=0.377 Sum_probs=113.1
Q ss_pred CCCchhh--HHHHHHHHHHHhcchhhHHHHHHhhcChhhcccc--CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHH
Q 016531 59 TQFPIWR--LDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLIT 134 (388)
Q Consensus 59 ~~lP~W~--~~~~il~~LLh~l~vDf~yYW~HRllH~p~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~ 134 (388)
..+|.|. ..++++++++. |+.+||.||++|++++||. |+||+...|-..||.++||+|+++.++. |+++
T Consensus 112 ~plPt~~~~l~~l~i~~liE----d~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~---~~~~ 184 (283)
T KOG0873|consen 112 APLPSWKEMLAQLVVFFLIE----DIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLG---TVMG 184 (283)
T ss_pred CCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCCh---hhhh
Confidence 4477776 66788888888 9999999999999999999 9999999999999999999999987654 3444
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcc-------cCcCCCCCCCCCCCCeEE
Q 016531 135 TALTGAGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT-------ASYAAPGELLDDSLDVVY 207 (388)
Q Consensus 135 ~~l~g~~s~~~l~~yll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~Hr-------tNy~~~~~~~~e~~D~Vf 207 (388)
..+.+. ++.+.++++++....+...|||+++ |+.+.+.+|+ | ....+|+ +|+.+.+. -+|.++
T Consensus 185 p~~~~~-H~~t~wiw~~l~i~~t~~~HsGY~f-Pwsl~~~~pf--y--~ga~~HD~HH~~f~~n~~~~f~----~~D~i~ 254 (283)
T KOG0873|consen 185 PALLCG-HVITLWIWIALRILETVESHSGYDF-PWSLSKLIPF--Y--GGAEHHDYHHLVFIGNFASVFG----YLDRIH 254 (283)
T ss_pred hHHhhh-HHHHHHHHHHHHHHHHhhccCCCCC-CccccccCcc--c--CCCcccchhhhhccccccchhH----HHHHHh
Confidence 333332 6889999999999999999999995 9888776665 2 4667777 66666665 899999
Q ss_pred eeccC
Q 016531 208 LTHLT 212 (388)
Q Consensus 208 ltH~~ 212 (388)
+|..+
T Consensus 255 GTd~~ 259 (283)
T KOG0873|consen 255 GTDST 259 (283)
T ss_pred ccCcc
Confidence 99877
No 4
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.54 E-value=3.2e-15 Score=123.75 Aligned_cols=106 Identities=28% Similarity=0.381 Sum_probs=83.0
Q ss_pred HHHHHHhcchhhHHHHHHhhcCh-hhcccc-CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 016531 71 LMALLHAGPVEFVYYWLHRALHH-HYLYSR-SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTGAGSIVPAFG 148 (388)
Q Consensus 71 l~~LLh~l~vDf~yYW~HRllH~-p~Lwr~-svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~~~l~g~~s~~~l~~ 148 (388)
+++++. |+++||.||++|. +++|+. +.||++++++++++.+.+|+|.++...+ ++++..+.+..+..++.+
T Consensus 3 ~~~l~~----d~~~Y~~HRl~H~~~~l~~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (114)
T PF04116_consen 3 LGFLLW----DFWEYWMHRLLHKIPFLWRIHKVHHSPKNPTPLSAFRFHPLEALLLALL---PLLLPLLLLPFHALAFLL 75 (114)
T ss_pred eeHHHH----HHHHHHHHHHHhcCchHHHHHHHHhCCcccCchHHHHcChHHHHHHHHH---HHHHHHHHHhHhHHHHHH
Confidence 345555 9999999999995 999977 9999999999999999999999987655 332222223345667788
Q ss_pred HHHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcc
Q 016531 149 YITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT 189 (388)
Q Consensus 149 yll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~Hr 189 (388)
+.++..+.+.++|||+.. +. .+.++++..+|++|+
T Consensus 76 ~~~~~~~~~~~~H~~~~~-~~-----~~~~~~~~~~~~~H~ 110 (114)
T PF04116_consen 76 GIALFYLWYIFIHSGYHH-RF-----PPRLRYLFVTPRHHD 110 (114)
T ss_pred HHHHHHHHHHHhhcCccC-CC-----CCcchhHhcCHHHHH
Confidence 889999999999999921 11 255677888999996
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.41 E-value=1.9e-13 Score=132.34 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCCchhhHHHHHHHHHHHhcchhhHHHHHHhhcChhhcccc--CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHHHH
Q 016531 59 TQFPIWRLDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTA 136 (388)
Q Consensus 59 ~~lP~W~~~~~il~~LLh~l~vDf~yYW~HRllH~p~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~~~ 136 (388)
-++||-.....+.++++ .+||.+||.||.+|++.+|++ +.||+++..+|++|.++||+|.+++++ |-.+..
T Consensus 121 ~~~gw~~~~~~i~~flf---F~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqai----p~~I~~ 193 (312)
T KOG0872|consen 121 LEYGWFLLFVSIFLFLF---FTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAI----PYHIYP 193 (312)
T ss_pred ccccHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhc----hhHhee
Confidence 37775444444444333 259999999999999888777 999999999999999999999998764 332222
Q ss_pred hhcccchhHHHHHHHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcc-------cCcCCCCCCCCCCCCeEEee
Q 016531 137 LTGAGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT-------ASYAAPGELLDDSLDVVYLT 209 (388)
Q Consensus 137 l~g~~s~~~l~~yll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~Hr-------tNy~~~~~~~~e~~D~Vflt 209 (388)
+....+..+......+..++++++|.|.-.. +.+.+++|+||+ -||+.... .||+.|++
T Consensus 194 Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~~----------l~~~ingaahHtvHH~~f~~NYG~~ti----lwDrmfgS 259 (312)
T KOG0872|consen 194 FIFPLHKVTYLSLFTFVNIWTISIHDGIYGS----------LNPPINGAAHHTVHHTYFDYNYGQYTI----LWDRMFGS 259 (312)
T ss_pred eeecchHHHHHHHHHHHHhHheeeecccccc----------ccCccccccccceeeeeEecCCCcEEE----eHHhccCc
Confidence 2222334455556667788999999976532 345679999999 66776666 89999998
Q ss_pred ccCC
Q 016531 210 HLTT 213 (388)
Q Consensus 210 H~~~ 213 (388)
....
T Consensus 260 fr~p 263 (312)
T KOG0872|consen 260 FRAP 263 (312)
T ss_pred ccCc
Confidence 8774
No 6
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.02 E-value=1.8e-11 Score=115.93 Aligned_cols=131 Identities=19% Similarity=0.210 Sum_probs=92.6
Q ss_pred HHHHhcchhhHHHHHHhhcCh-hhcccc--CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 016531 73 ALLHAGPVEFVYYWLHRALHH-HYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTGAGSIVPAFGY 149 (388)
Q Consensus 73 ~LLh~l~vDf~yYW~HRllH~-p~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~~~l~g~~s~~~l~~y 149 (388)
++.-++++|.|.|++||.||. ++||+. ++||+-.+|.+..|.+.||+|.++...+-+. +..+..+.|.-+.+++
T Consensus 126 ~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~g---la~l~sglspr~aiif 202 (287)
T KOG0874|consen 126 FFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGG---LAFLLSGLSPRTAIIF 202 (287)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchH---HHHHHcCCCccceEEE
Confidence 333444569999999999999 999999 9999999999999999999999988754221 1112223344455667
Q ss_pred HHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcccCc--CCCCCCCCC----CCCeEEeeccC
Q 016531 150 ITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLTASY--AAPGELLDD----SLDVVYLTHLT 212 (388)
Q Consensus 150 ll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~HrtNy--~~~~~~~~e----~~D~VfltH~~ 212 (388)
+.+.+.-++.+|||+-+ |..++++ .+-+...+|+.++ -.+..|... .||+|++|...
T Consensus 203 FtfaTiKTVDDHCGy~l-P~dpfqm-----~F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp 265 (287)
T KOG0874|consen 203 FTFATIKTVDDHCGYWL-PGDPFQM-----FFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMP 265 (287)
T ss_pred EEeeeeeeecccccccc-CCCceeE-----eccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCC
Confidence 77888899999999985 7756554 2236788888321 111122222 79999998543
No 7
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.93 E-value=0.0023 Score=64.91 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=77.3
Q ss_pred HHhcceeEEeecccCcc---eeeeEEEec--cCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 016531 256 WIYGRTFVVERNRLNKL---KLQTWAKSK--YNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 330 (388)
Q Consensus 256 w~~~~~f~~~~~~~~~~---~~qtw~ipr--~~~qy~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~ 330 (388)
|....+|++++-+.+-- ..+-|.|.- -+=|- ...+.+..=+.|.+|+..|++.|++|..||...+--. +++.
T Consensus 34 ~~~~~p~~~~~~~v~S~~g~~~eg~~i~~~~~pe~l-~~~~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~--~~~~ 110 (340)
T PRK14982 34 WCSAPPQLVDHIEVTSATGQTIEGKYIESCFLPEML-SNRRFKTARRKVLNAMALAQKKGINITALGGFSSIIF--ENFN 110 (340)
T ss_pred HhhCCCeEeeeEEEEeCCCCEEEEEEEeCCCCHHHH-hccChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhc--CCcc
Confidence 44466899988877555 346777633 22233 3323444446788899999999999999999987543 2223
Q ss_pred eee-eccCCCce---EeecCCceehhhhhccCC---------CCCceeeeeecc
Q 016531 331 LFV-HKNPELKI---KVVDGSSLAVAVLTNSIP---------AEQPKWSLEAFS 371 (388)
Q Consensus 331 l~v-~k~p~l~v---rvv~g~tl~aavvl~~ip---------~~~~~~~l~~~~ 371 (388)
+-+ ++-+++++ ++-.|||+||++....+. -..|.|++||++
T Consensus 111 ~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAt 164 (340)
T PRK14982 111 LLQHKQVRNTTLEWERFTTGNTHTAYVICRQVEQNAPRLGIDLSKATVAVVGAT 164 (340)
T ss_pred cccccccccceeccccccCCchhHHHHHHHHHHHhHHHhccCcCCCEEEEEccC
Confidence 332 44466778 899999999998875543 234789999985
No 8
>PLN02434 fatty acid hydroxylase
Probab=90.70 E-value=0.34 Score=47.20 Aligned_cols=120 Identities=22% Similarity=0.141 Sum_probs=57.8
Q ss_pred hhHHHHHHh-hcCh-h-------hcccc-CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHHHHhhc----ccchhHH
Q 016531 81 EFVYYWLHR-ALHH-H-------YLYSR-SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTG----AGSIVPA 146 (388)
Q Consensus 81 Df~yYW~HR-llH~-p-------~Lwr~-svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~~~l~g----~~s~~~l 146 (388)
-+.-|..|| ++|. + ..+.. ..||.. |.-.....++|.-..+....+..++.. .++. ..-...+
T Consensus 95 tl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~--P~D~~rLv~PP~~~~~l~~~~~~l~~~-~~~~~~a~~~~~G~l 171 (237)
T PLN02434 95 TLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKH--PMDGLRLVFPPAATAILCVPFWNLIAL-FATPATAPALFGGGL 171 (237)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcC--CCCCCCeecCcHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHH
Confidence 788999999 5675 1 12222 689943 333333446776544433322211111 0000 0001134
Q ss_pred HHHHHHHHHHhhhccccceeccC-cccccCCCceEEeCCChhcccCcCCCCCCCCCCCCeEEeeccC
Q 016531 147 FGYITYIDLMNNMGHCNFGLIPK-WLFTIFPPLKYLMYTPSPLTASYAAPGELLDDSLDVVYLTHLT 212 (388)
Q Consensus 147 ~~yll~~~~~~~~gHsN~el~P~-~lf~~lp~LkyLi~TPs~HrtNy~~~~~~~~e~~D~VfltH~~ 212 (388)
.+|+.|- ..-...|.+ + |+ +.. .-+|. ++-.||-.|++.-+.-+...||+||+|-..
T Consensus 172 ~gYl~Yd-~~Hy~lH~~-~--p~~~~~---r~lkr--~H~~HHfk~~~~~fGVTs~~wD~vFGT~~~ 229 (237)
T PLN02434 172 LGYVMYD-CTHYFLHHG-Q--PSTDVL---RNLKK--YHLNHHFRDQDKGFGITSSLWDRVFGTLPP 229 (237)
T ss_pred HHHHHHH-HHHHHHHhc-C--cchHHH---HHHHH--HHHHHcCCCCCCCCCcCchHHHHhcCCCCC
Confidence 4555443 444445543 2 32 111 12333 455555566555443345599999999644
No 9
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=74.68 E-value=10 Score=39.56 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=40.1
Q ss_pred cchhhHHHHHHhhcCh-hhcccc-CCCcCCCCCCcee---------cccCCchHHHHHHH
Q 016531 78 GPVEFVYYWLHRALHH-HYLYSR-SHHHSSIVPEPIT---------SVTRPFAEHITYFV 126 (388)
Q Consensus 78 l~vDf~yYW~HRllH~-p~Lwr~-svHHSs~~p~p~T---------a~r~HplE~ll~~~ 126 (388)
+.+|..+=.+|-+.|+ ++|+|. ..||..-.++-.- ..++.|.|+++...
T Consensus 17 ~~~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 76 (406)
T PRK07424 17 LWVEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLL 76 (406)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHH
Confidence 3458888888999998 999999 9999988877665 67889999776544
No 10
>PLN02601 beta-carotene hydroxylase
Probab=73.30 E-value=15 Score=36.86 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=33.2
Q ss_pred CCCchhhHHHHHHHHHHHhcchhhHHHHHHhhcChhhcccc-CCCcCCCC
Q 016531 59 TQFPIWRLDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR-SHHHSSIV 107 (388)
Q Consensus 59 ~~lP~W~~~~~il~~LLh~l~vDf~yYW~HRllH~p~Lwr~-svHHSs~~ 107 (388)
.+.|.-...+.++.++..++.+|++-.|.||..=|.++|.. +=||...+
T Consensus 126 g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG~LW~lH~sHH~Pr~ 175 (303)
T PLN02601 126 GEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWHDSLWNMHESHHKPRE 175 (303)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcCCCCC
Confidence 56775333333333344444569999999998877899999 77886554
No 11
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=67.86 E-value=25 Score=28.72 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=46.4
Q ss_pred cceeEEeecccCcceeeeEEEeccCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccc
Q 016531 259 GRTFVVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQG 322 (388)
Q Consensus 259 ~~~f~~~~~~~~~~~~qtw~ipr~~~qy~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~ 322 (388)
|+..+.+.+.+.-...=-.+.|+|.-+ .-+...+.+.+-+++++..|+++++|.|.+=++.-+
T Consensus 43 G~~~~t~~~~l~~~~Iih~v~P~~~~~-~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G 105 (118)
T PF01661_consen 43 GEVIVTPGGNLPCKYIIHAVGPTYNSP-GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTG 105 (118)
T ss_dssp TSEEEEEETTSSSSEEEEEEEEETTTS-TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSS
T ss_pred CCeeeecCCCccccceEEEecceeccc-cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCC
Confidence 556777777765222233355887655 566778889999999999999999999998776543
No 12
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=51.64 E-value=13 Score=32.39 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEe
Q 016531 292 NESINRLIEEAILEAEEKGARVISL 316 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sL 316 (388)
.-+-|..+-+|+.+|.++|+||+++
T Consensus 112 ~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp SSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3456788999999999999999987
No 13
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.43 E-value=47 Score=31.25 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=44.1
Q ss_pred EeccCccccccCCchhHHHHHHHHHHHHHHcCC-eEEEeeccc---c-----ccccc---c---ccceeeeccCCCceEe
Q 016531 279 KSKYNMQYFSQQPNESINRLIEEAILEAEEKGA-RVISLGLLN---Q-----GEELN---R---YGGLFVHKNPELKIKV 343 (388)
Q Consensus 279 ipr~~~qy~~~~~~~~in~~ie~ail~ad~~gv-kv~sLg~lN---k-----~~~ln---~---~g~l~v~k~p~l~vrv 343 (388)
=|+|+...++|.....-.+.|++||.+|-+.|. +..-.+.+. | ++.-. + .|..|++..-+.|-.|
T Consensus 27 ~~KYs~t~lipK~d~~t~~~I~~Ai~~a~~~~~~~k~~~~~~~~~~k~plrDGD~~~~~d~~~y~g~~~i~A~sk~~P~v 106 (181)
T PF10991_consen 27 EPKYSATLLIPKSDKETIAAIKAAIEAAIEEGWGNKWKGKKIPANLKLPLRDGDEKRPSDGEEYEGHYFINASSKKRPGV 106 (181)
T ss_pred CcceeEEEEEcCCCHHHHHHHHHHHHHHHHhcccccccccccCccccccccCCCcccCCCCcccCccEEEecCCCCCCeE
Confidence 588999999987766656778888888777766 221122211 1 11111 2 4567777776778888
Q ss_pred ecCCc
Q 016531 344 VDGSS 348 (388)
Q Consensus 344 v~g~t 348 (388)
||.+.
T Consensus 107 vD~~~ 111 (181)
T PF10991_consen 107 VDRQK 111 (181)
T ss_pred EcCCC
Confidence 88765
No 14
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.69 E-value=32 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.6
Q ss_pred CchhHHHHHHHHHHHHHHcCCeEEEeecccc
Q 016531 291 PNESINRLIEEAILEAEEKGARVISLGLLNQ 321 (388)
Q Consensus 291 ~~~~in~~ie~ail~ad~~gvkv~sLg~lNk 321 (388)
...+=|+.+.+++..|.++|+||+++-.-..
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4556788999999999999999999976443
No 15
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=38.55 E-value=42 Score=31.86 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCC----------------------eEEEeecccccccc----ccc--------cceeeeccCCCce
Q 016531 296 NRLIEEAILEAEEKGA----------------------RVISLGLLNQGEEL----NRY--------GGLFVHKNPELKI 341 (388)
Q Consensus 296 n~~ie~ail~ad~~gv----------------------kv~sLg~lNk~~~l----n~~--------g~l~v~k~p~l~v 341 (388)
|+.+++||.+|.++|+ .||+-|+.|++.++ |.| |+-.....|+-..
T Consensus 106 ~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di~ApG~~i~~~~~~~~~ 185 (239)
T cd05561 106 NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDFAAPGVDVWVAAPGGGY 185 (239)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCCccccCCCCCcceEEccccceecccCCCCE
Q ss_pred EeecCCceehhhh
Q 016531 342 KVVDGSSLAVAVL 354 (388)
Q Consensus 342 rvv~g~tl~aavv 354 (388)
+.+.|+|++|+.|
T Consensus 186 ~~~sGTS~AaP~v 198 (239)
T cd05561 186 RYVSGTSFAAPFV 198 (239)
T ss_pred EEeCCHHHHHHHH
No 16
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=37.96 E-value=28 Score=30.62 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEee----------ccccccc--cccccceeeeccCCCceE-----eecCCceehhhh
Q 016531 292 NESINRLIEEAILEAEEKGARVISLG----------LLNQGEE--LNRYGGLFVHKNPELKIK-----VVDGSSLAVAVL 354 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sLg----------~lNk~~~--ln~~g~l~v~k~p~l~vr-----vv~g~tl~aavv 354 (388)
...-+..+.+.|.++.+.|..|.+.+ +||..+. -...-+.+-+++|+.+++ |.||+-+||+..
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~ 154 (166)
T PF13278_consen 75 AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGP 154 (166)
T ss_dssp HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSC
T ss_pred hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHH
Confidence 34667888889999999999999874 4552211 112345566788887665 789999998764
Q ss_pred h
Q 016531 355 T 355 (388)
Q Consensus 355 l 355 (388)
.
T Consensus 155 ~ 155 (166)
T PF13278_consen 155 T 155 (166)
T ss_dssp C
T ss_pred H
Confidence 3
No 17
>PRK09929 hypothetical protein; Provisional
Probab=35.42 E-value=53 Score=27.81 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHH-HHHHcCCeEEEeeccccccccccccceeeec
Q 016531 299 IEEAIL-EAEEKGARVISLGLLNQGEELNRYGGLFVHK 335 (388)
Q Consensus 299 ie~ail-~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k 335 (388)
+|++|. .||+.|++-.-.=.-|.+..+.+.-++|-||
T Consensus 54 ~~~~La~KAd~~GA~yY~Ii~a~~~n~~h~tA~IYkk~ 91 (91)
T PRK09929 54 AKEDLIKKADEKGADVLVLTSGQTDNKIHGTADIYKKK 91 (91)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCcEEEEEEeeecC
Confidence 566666 7999999843332235555677877888654
No 18
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.28 E-value=40 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEee
Q 016531 296 NRLIEEAILEAEEKGARVISLG 317 (388)
Q Consensus 296 n~~ie~ail~ad~~gvkv~sLg 317 (388)
++.+.+++.+|.++|+|++++-
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5678888899999999999986
No 19
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=34.59 E-value=30 Score=29.55 Aligned_cols=23 Identities=48% Similarity=0.549 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccc
Q 016531 297 RLIEEAILEAEEKGARVISLGLLN 320 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lN 320 (388)
+.||+|+.+|+++|+| =||=+++
T Consensus 38 ~~i~~av~~A~~KG~k-esLvl~~ 60 (96)
T TIGR02530 38 KKLLEAVEEAESKGVK-DSLILMN 60 (96)
T ss_pred HHHHHHHHHHHhcCCC-ceEEEeC
Confidence 4589999999999999 5665553
No 20
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=33.75 E-value=39 Score=35.76 Aligned_cols=71 Identities=27% Similarity=0.313 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCeE-EEeeccccccccc----------------cccceeeeccCCCceEeecCCc--------e---
Q 016531 298 LIEEAILEAEEKGARV-ISLGLLNQGEELN----------------RYGGLFVHKNPELKIKVVDGSS--------L--- 349 (388)
Q Consensus 298 ~ie~ail~ad~~gvkv-~sLg~lNk~~~ln----------------~~g~l~v~k~p~l~vrvv~g~t--------l--- 349 (388)
+||+-|.+.+-.|.|| ||||--|-|..+| |+|+ .-+-.+.--||||=- -
T Consensus 91 qi~~di~~CQS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~---~S~RPfg~AVvDGfDF~IE~g~~~~ys 167 (568)
T KOG4701|consen 91 QIETDIQVCQSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGE---DSYRPFGKAVVDGFDFEIEKGTNTAYS 167 (568)
T ss_pred hhhhHHHHHHhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCc---cccCcccchhccceeeeeecCCcchHH
Confidence 7899999999999999 5999888887776 3555 444456667788732 1
Q ss_pred -ehhhhhccCCCCCceeeeeecc
Q 016531 350 -AVAVLTNSIPAEQPKWSLEAFS 371 (388)
Q Consensus 350 -~aavvl~~ip~~~~~~~l~~~~ 371 (388)
.|--.+...-.|.++..|+|+-
T Consensus 168 aLA~~L~~~Fa~~~r~yYLsaAP 190 (568)
T KOG4701|consen 168 ALAKRLLEIFASDPRRYYLSAAP 190 (568)
T ss_pred HHHHHHHHHHccCCceEEeccCC
Confidence 1222334456788999999874
No 21
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=33.51 E-value=15 Score=38.03 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=56.8
Q ss_pred eeEEEeccCccccccCCchhH-----------HHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEe
Q 016531 275 QTWAKSKYNMQYFSQQPNESI-----------NRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKV 343 (388)
Q Consensus 275 qtw~ipr~~~qy~~~~~~~~i-----------n~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrv 343 (388)
+||+|=|||+.=.||-.-+=| ...|++||.-|.+.||-+.++|-+-+-.-- .|.|.-.|--.-+|||
T Consensus 37 Ht~aI~r~Gir~lLP~~ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs--~~SL~~ara~GadVri 114 (364)
T PRK15062 37 HTHAIFRYGLRSLLPENIELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGS--KGSLLEAKAEGADVRI 114 (364)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCC--cCCHHHHHhCCCCEEE
Confidence 899999999988898776544 689999999999999999999988775432 4567777777778888
Q ss_pred ec
Q 016531 344 VD 345 (388)
Q Consensus 344 v~ 345 (388)
|-
T Consensus 115 VY 116 (364)
T PRK15062 115 VY 116 (364)
T ss_pred Ee
Confidence 85
No 22
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=31.85 E-value=56 Score=25.25 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccce-eeeccCC--CceEeecCCceeh
Q 016531 293 ESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGL-FVHKNPE--LKIKVVDGSSLAV 351 (388)
Q Consensus 293 ~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l-~v~k~p~--l~vrvv~g~tl~a 351 (388)
..|.++++++..+.+..|++|+|+ |+++..-..... +..+.++ .++|.=+|.++.+
T Consensus 15 ~~i~el~~~~~~~~~~~~~~v~s~---~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~~i~~ 73 (81)
T TIGR01445 15 VKIGELVEKEKDEKEPIKVKVLSL---DGGKIVKARPVVVWKRRAEGKLIRIKTENGREIKA 73 (81)
T ss_pred EEHHHHHHHHhccCCccceEEEee---cCCcEEEeeceEEEEecCCCcEEEEEeCCCCEEEE
Confidence 567777776654444458999998 444322222222 2334554 7788888888764
No 23
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=31.81 E-value=1e+02 Score=24.35 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCC-CceEeecCC
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPE-LKIKVVDGS 347 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~-l~vrvv~g~ 347 (388)
..++++..++.++|+++.. .....-++|.-+.-++|+ .++.+..|+
T Consensus 66 ~d~~~~~~~l~~~G~~~~~-----~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 66 EEFDEYTERLKALGVEMKP-----ERPRVQGEGRSIYFYDPDGHLLELHAGT 112 (113)
T ss_pred HHHHHHHHHHHHcCCccCC-----CccccCCCceEEEEECCCCCEEEEEeCc
Confidence 5688888899999999852 112222456666677886 666666654
No 24
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=31.56 E-value=37 Score=33.11 Aligned_cols=124 Identities=20% Similarity=0.126 Sum_probs=59.8
Q ss_pred hhHHHHHHhhcCh-hh----ccc----c---CCCcCCCCCCceecccCCchHHHHHHHHHHHHHHHHH---hhcccchhH
Q 016531 81 EFVYYWLHRALHH-HY----LYS----R---SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTA---LTGAGSIVP 145 (388)
Q Consensus 81 Df~yYW~HRllH~-p~----Lwr----~---svHHSs~~p~p~Ta~r~HplE~ll~~~lf~IPLl~~~---l~g~~s~~~ 145 (388)
-+.-|-.||++=| +. -|. + ..||... ---.-..++|+-..+....+..++-... ..+.+-...
T Consensus 95 Tl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P--~D~~RLVfPP~~~~il~~pfy~~~~~vl~~~~~~a~faG~ 172 (240)
T KOG0539|consen 95 TLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLP--MDGYRLVFPPTPFAILAAPFYLILSLVLPHPVAPAGFAGG 172 (240)
T ss_pred HHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCC--CCCceEecCCchHHHHHHHHHHHHHHhcCcchhhhhhccc
Confidence 7889999996544 41 121 1 6777543 2222345677666555544433321110 000111124
Q ss_pred HHHHHHHHHHHhhhccccceeccCcccccCCCceEEeCCChhcccCcCCCCCCCCCCCCeEEeeccCC
Q 016531 146 AFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLTASYAAPGELLDDSLDVVYLTHLTT 213 (388)
Q Consensus 146 l~~yll~~~~~~~~gHsN~el~P~~lf~~lp~LkyLi~TPs~HrtNy~~~~~~~~e~~D~VfltH~~~ 213 (388)
+.+|+.|-...=.+-|.+- |++.. +.-+|. ++=.||=.||..-.-=+...||.||.|=...
T Consensus 173 l~GYV~YDmtHYyLHhg~p---~~~~~--~~~lK~--yHl~HHfk~q~~GfGItS~lWD~VFgTl~~~ 233 (240)
T KOG0539|consen 173 LLGYVCYDMTHYYLHHGSP---PKRPY--LKHLKK--YHLNHHFKHQDLGFGITSSLWDYVFGTLGPL 233 (240)
T ss_pred hhhhhhhhhhhhhhhcCCC---CCchH--HHHHHH--HHhhhhhhccccCccccHHHHHHHhccCCCC
Confidence 5678877666666666632 12111 112232 2333333554432211344899999886553
No 25
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=30.14 E-value=49 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecc
Q 016531 293 ESINRLIEEAILEAEEKGARVISLGLL 319 (388)
Q Consensus 293 ~~in~~ie~ail~ad~~gvkv~sLg~l 319 (388)
-|-|+.+.+|+..|.++|+||+++-.-
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345889999999999999999999654
No 26
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=29.52 E-value=63 Score=28.85 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe----------eccccccccc--cccceeeeccCCCce-----EeecCCceehhhh
Q 016531 295 INRLIEEAILEAEEKGARVISL----------GLLNQGEELN--RYGGLFVHKNPELKI-----KVVDGSSLAVAVL 354 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sL----------g~lNk~~~ln--~~g~l~v~k~p~l~v-----rvv~g~tl~aavv 354 (388)
-|+.+-+.|.+..++|..|.+. |+||..+.-. ...+.+-+++|+.++ =|+||+-.||+-.
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~ 157 (187)
T cd03137 81 PPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGV 157 (187)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccH
Confidence 3566777778888889999887 6666443322 122334445565443 2678999988754
No 27
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.99 E-value=56 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeeccc
Q 016531 292 NESINRLIEEAILEAEEKGARVISLGLLN 320 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sLg~lN 320 (388)
..|=++.+-+++..|.++|+||+++-.-.
T Consensus 55 ~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 55 QSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 34557778899999999999999997653
No 28
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=28.83 E-value=71 Score=24.27 Aligned_cols=15 Identities=53% Similarity=0.758 Sum_probs=10.0
Q ss_pred HHHHHH-HHHHcCCeE
Q 016531 299 IEEAIL-EAEEKGARV 313 (388)
Q Consensus 299 ie~ail-~ad~~gvkv 313 (388)
+|++|. .||++|++-
T Consensus 20 ~~~~la~kAd~~GA~~ 35 (56)
T PF07338_consen 20 AEEALAKKADEKGAKY 35 (56)
T ss_dssp HHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHcCCCE
Confidence 455555 899999873
No 29
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=28.70 E-value=46 Score=32.42 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehh
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVA 352 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aa 352 (388)
..+++++.+..+.|-+||++.+..+--.--.+-....+..++.+|+|+|-.+..++
T Consensus 65 ~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~ 120 (275)
T TIGR00762 65 GEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMG 120 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHH
Confidence 45677777777788899999887764332223344445667789999998877654
No 30
>PRK13912 nuclease NucT; Provisional
Probab=28.03 E-value=75 Score=28.94 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccccccccccc--ceeeeccCCCceEeecCC
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQGEELNRYG--GLFVHKNPELKIKVVDGS 347 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g--~l~v~k~p~l~vrvv~g~ 347 (388)
+-|-+|+.+|-++||+|==+---.++ .+... .-+..+.|+.+++..+|-
T Consensus 59 ~~i~~aL~~Aa~RGV~VrIlld~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (177)
T PRK13912 59 KDIAKALKSAAKRGVKISIIYDYESN--HNNDQSTIGYLDKYPNIKVCLLKGL 109 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCccc--cCcchhHHHHHHhCCCceEEEecCc
Confidence 46888888999999998655321111 11111 124556677777766654
No 31
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=27.92 E-value=26 Score=23.99 Aligned_cols=11 Identities=55% Similarity=1.060 Sum_probs=9.5
Q ss_pred HHcCCeEEEee
Q 016531 307 EEKGARVISLG 317 (388)
Q Consensus 307 d~~gvkv~sLg 317 (388)
+..|-||+|||
T Consensus 19 eD~GPKv~~lg 29 (30)
T PF07492_consen 19 EDTGPKVLSLG 29 (30)
T ss_pred ecCCCeEEecc
Confidence 56899999998
No 32
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.69 E-value=60 Score=29.75 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHcCCeEE-Eee
Q 016531 293 ESINRLIEEAILEAEEKGARVI-SLG 317 (388)
Q Consensus 293 ~~in~~ie~ail~ad~~gvkv~-sLg 317 (388)
..-++.+|....+|||.|.||. +|+
T Consensus 61 ~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 61 MPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3556789999999999999985 444
No 33
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=27.46 E-value=67 Score=25.64 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe
Q 016531 295 INRLIEEAILEAEEKGARVISL 316 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sL 316 (388)
-++|+++|+..|++.|.||...
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVPT 61 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
Confidence 4678888888999999999864
No 34
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=27.23 E-value=44 Score=28.21 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=31.2
Q ss_pred EEeccCccccccCCchhHHHHHHHHHH-HHHHcCCeEEEeec
Q 016531 278 AKSKYNMQYFSQQPNESINRLIEEAIL-EAEEKGARVISLGL 318 (388)
Q Consensus 278 ~ipr~~~qy~~~~~~~~in~~ie~ail-~ad~~gvkv~sLg~ 318 (388)
++.+|...=++...++.|++.|++.+. ++++.|++|.+...
T Consensus 66 ~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i 107 (124)
T cd03400 66 VTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLL 107 (124)
T ss_pred HhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEE
Confidence 455566644444468999999999988 58889999999855
No 35
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=27.16 E-value=56 Score=32.93 Aligned_cols=60 Identities=25% Similarity=0.439 Sum_probs=35.2
Q ss_pred CCchhHHHHHHHH-------------------HHHHH-HcCCeEEEeeccccccc---cc--cccceeeeccCCCceEee
Q 016531 290 QPNESINRLIEEA-------------------ILEAE-EKGARVISLGLLNQGEE---LN--RYGGLFVHKNPELKIKVV 344 (388)
Q Consensus 290 ~~~~~in~~ie~a-------------------il~ad-~~gvkv~sLg~lNk~~~---ln--~~g~l~v~k~p~l~vrvv 344 (388)
.-||-|=++|.+| ++||- |+||-|-=| |++..- |+ ..-.+=....+|+|||.|
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiL--LD~~~~~~Fl~Mc~~~~v~~~~~~nmrVRsv 211 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYIL--LDEQNLPHFLEMCEKLGVNLQHLKNMRVRSV 211 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEE--echhcChHHHHHHHHCCCChhhcCCeEEEEe
Confidence 3466677777666 45555 899988543 333211 00 000111234689999999
Q ss_pred cCCceeh
Q 016531 345 DGSSLAV 351 (388)
Q Consensus 345 ~g~tl~a 351 (388)
.|.|.-+
T Consensus 212 ~G~~y~~ 218 (284)
T PF07894_consen 212 TGCTYYS 218 (284)
T ss_pred cCCeeec
Confidence 9998754
No 36
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=26.76 E-value=29 Score=35.40 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=52.0
Q ss_pred cccc--cCCchhHHHHHHHHHHHH--HHcC-CeEEEeecc--ccccccccccceeeeccCCCceEeecCCceehhhhhcc
Q 016531 285 QYFS--QQPNESINRLIEEAILEA--EEKG-ARVISLGLL--NQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNS 357 (388)
Q Consensus 285 qy~~--~~~~~~in~~ie~ail~a--d~~g-vkv~sLg~l--Nk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ 357 (388)
||+. +-..++|+.+|+||-.+| |++| +|=++||+. ||.+.--.==+-|-+++|++- .=++=+|=|++++.-.
T Consensus 37 h~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~a-e~~~v~sDa~~sl~a~ 115 (336)
T KOG1794|consen 37 HWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVA-ENFYVTSDADGSLAAA 115 (336)
T ss_pred cccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchh-heeeeehhHHHHHhhc
Confidence 4555 444566777777776654 6778 777777664 443321111234558999975 3233345566666666
Q ss_pred CCCCCceeee---eecccccccc
Q 016531 358 IPAEQPKWSL---EAFSLRLLMP 377 (388)
Q Consensus 358 ip~~~~~~~l---~~~~~~~~~~ 377 (388)
-|++..-+.| ||.+-||..|
T Consensus 116 t~g~~~GiVLiaGTgs~crl~~~ 138 (336)
T KOG1794|consen 116 TPGGEGGIVLIAGTGSNCRLVNP 138 (336)
T ss_pred CCCCCCcEEEEecCCceeEEECC
Confidence 7765554444 3455566544
No 37
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.71 E-value=62 Score=32.24 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=37.7
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecC
Q 016531 289 QQPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDG 346 (388)
Q Consensus 289 ~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g 346 (388)
|.-.+.=+.++||||.-|.+.|++.|-|+ |+-.-|=++++.-+-|-..|
T Consensus 88 ~~~r~~aleiM~KaI~LA~dLGIRtIQLA---------GYDVYYE~~d~eT~~rFi~g 136 (287)
T COG3623 88 EATRQQALEIMEKAIQLAQDLGIRTIQLA---------GYDVYYEEADEETRQRFIEG 136 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceeEeec---------cceeeeccCCHHHHHHHHHH
Confidence 33445568899999999999999999776 66666667777777676666
No 38
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=26.63 E-value=65 Score=32.99 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEE-e-ecccc--ccccccccceeeecc-CC--------CceEeecCCc
Q 016531 292 NESINRLIEEAILEAEEKGARVIS-L-GLLNQ--GEELNRYGGLFVHKN-PE--------LKIKVVDGSS 348 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~s-L-g~lNk--~~~ln~~g~l~v~k~-p~--------l~vrvv~g~t 348 (388)
.+.+-+.|-+|+.+|-+.||||== + |..++ .++|...|-=+..-+ |. .|.-||||.+
T Consensus 58 ~d~~g~~i~~aL~~aa~rGV~Vril~D~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~~k~~IiDg~~ 127 (369)
T PHA03003 58 STPEGRLILDKLKEAAESGVKVTILVDEQSGDKDEEELQSSNINYIKVDIGKLNNVGVLLGSFWVSDDRR 127 (369)
T ss_pred CCchHHHHHHHHHHhccCCCeEEEEecCCCCCccHHHHHHcCCEEEEEeccccCCCCceeeeEEEEcCcE
Confidence 577888899999998899999832 2 22222 344555553222111 11 2456899876
No 39
>PRK09850 pseudouridine kinase; Provisional
Probab=26.62 E-value=63 Score=31.40 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCe--EEEeecccccc-ccccccceeeeccCCCceEeec----CCceehhhhh
Q 016531 297 RLIEEAILEAEEKGAR--VISLGLLNQGE-ELNRYGGLFVHKNPELKIKVVD----GSSLAVAVLT 355 (388)
Q Consensus 297 ~~ie~ail~ad~~gvk--v~sLg~lNk~~-~ln~~g~l~v~k~p~l~vrvv~----g~tl~aavvl 355 (388)
..++++...-.+.|+| |+++|. ++- -.+++|+.. ..|..++++|| |++.+|+.+.
T Consensus 203 ~~~~~~~~~l~~~g~~~vvvT~G~--~G~~~~~~~~~~~--~~~~~~~~vvDttGAGDaF~agfi~ 264 (313)
T PRK09850 203 EDVAKVAAWFHQHGLNRLVLSMGG--DGVYYSDISGESG--WSAPIKTNVINVTGAGDAMMAGLAS 264 (313)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC--ceEEEEcCCCCeE--ecCCCCcccccCCCcHHHHHHHHHH
Confidence 3466776666678876 677774 221 122233211 24666789999 8888777654
No 40
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=26.38 E-value=98 Score=30.04 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCC---------------------eEEEeeccccc---------------cccccccceeeeccCCCc
Q 016531 297 RLIEEAILEAEEKGA---------------------RVISLGLLNQG---------------EELNRYGGLFVHKNPELK 340 (388)
Q Consensus 297 ~~ie~ail~ad~~gv---------------------kv~sLg~lNk~---------------~~ln~~g~l~v~k~p~l~ 340 (388)
+.+++|+.+|.++|+ .||+-|++|++ ..+-.-|+-.+...|+-.
T Consensus 125 ~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~l~ApG~~i~~~~~~~~ 204 (267)
T cd07476 125 PILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYRKKGILAPGENILGAALGGE 204 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCCCCeeeecCCCCCCCCceEEecCCCceeecCCCC
Q ss_pred eEeecCCceehhhh
Q 016531 341 IKVVDGSSLAVAVL 354 (388)
Q Consensus 341 vrvv~g~tl~aavv 354 (388)
...+.|+|++|+.|
T Consensus 205 ~~~~sGTS~AaP~v 218 (267)
T cd07476 205 VVRRSGTSFAAAIV 218 (267)
T ss_pred eEEeccHHHHHHHH
No 41
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=26.13 E-value=38 Score=28.48 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.7
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCeE
Q 016531 289 QQPNESINRLIEEAILEAEEKGARV 313 (388)
Q Consensus 289 ~~~~~~in~~ie~ail~ad~~gvkv 313 (388)
|.+.+..-++|+||=.|=.++|+||
T Consensus 67 peA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6688889999999999999999986
No 42
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=25.71 E-value=52 Score=29.52 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCeEEEeecccc
Q 016531 300 EEAILEAEEKGARVISLGLLNQ 321 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk 321 (388)
++|+.+|++.||+|.+.|.-+.
T Consensus 122 ~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 122 KDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHHHHHHCCcEEEEEEeccc
Confidence 6788889999999999999765
No 43
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.26 E-value=72 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeec
Q 016531 292 NESINRLIEEAILEAEEKGARVISLGL 318 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sLg~ 318 (388)
+.|=++.+-+++..|.++|+||+++-.
T Consensus 52 ~SG~t~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 52 YSGNTEETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 445567788888899999999999874
No 44
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.17 E-value=70 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=26.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCeEEEeeccc
Q 016531 288 SQQPNESINRLIEEAILEAEEKGARVISLGLLN 320 (388)
Q Consensus 288 ~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lN 320 (388)
+-.-.-|-++.+.+++..|.++|+||+++-.-.
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 333445678999999999999999999986543
No 45
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.09 E-value=70 Score=28.76 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeecc
Q 016531 292 NESINRLIEEAILEAEEKGARVISLGLL 319 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sLg~l 319 (388)
..|=++.+.+++..|.++|+||+++-.-
T Consensus 84 ~sG~t~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 84 GSGETSSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 3345788889999999999999998754
No 46
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.07 E-value=87 Score=26.44 Aligned_cols=30 Identities=30% Similarity=0.176 Sum_probs=23.9
Q ss_pred CchhHHHHHHHHHHHHHHcCCeEEEeeccc
Q 016531 291 PNESINRLIEEAILEAEEKGARVISLGLLN 320 (388)
Q Consensus 291 ~~~~in~~ie~ail~ad~~gvkv~sLg~lN 320 (388)
-..|=++.+-+|+..|+++|+||+++-.-.
T Consensus 55 S~SG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 55 SHSGNTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred eCCCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 334557888899999999999999987633
No 47
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=24.43 E-value=65 Score=27.47 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=27.1
Q ss_pred eeEEEeccCccccccCCchhHH-HHHHHHHHHHHHcCCeEEEeec
Q 016531 275 QTWAKSKYNMQYFSQQPNESIN-RLIEEAILEAEEKGARVISLGL 318 (388)
Q Consensus 275 qtw~ipr~~~qy~~~~~~~~in-~~ie~ail~ad~~gvkv~sLg~ 318 (388)
.+-.|+.....= ..+.+||- +|+++|+.+|++.|-||+-+-=
T Consensus 38 ~~i~i~HT~V~d--~lrGqGia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 38 NLIIIDHTYVPD--ELRGQGIAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred CEEEEecCcCCH--HHcCCcHHHHHHHHHHHHHHHcCCeEcccch
Confidence 344555544311 12455554 6788899999999999987643
No 48
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=24.30 E-value=77 Score=31.53 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehhhhhccCCC
Q 016531 300 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPA 360 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ip~ 360 (388)
.+|+.+|=++|+|++=|-.=+- |+-...|-||.|||..|-+.++=+
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdg---------------~~~eP~V~HG~tlts~i~f~~v~~ 77 (258)
T cd08629 32 TEAYIRALCKGCRCLELDCWDG---------------PNQEPIIYHGYTFTSKILFCDVLR 77 (258)
T ss_pred HHHHHHHHHhCCcEEEEEeecC---------------CCCCcEEeeCCCCccCcCHHHHHH
Confidence 4789999999999998877551 123467899999999876655433
No 49
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=24.23 E-value=73 Score=31.68 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehhhhhccCCCC
Q 016531 300 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAE 361 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ip~~ 361 (388)
.+|+.+|=++|+|+|=|-.=+ + |+-...|-||.|||..|-+.++=+.
T Consensus 32 ~e~y~~aL~~GcRcvElD~wd-g--------------~~~ep~v~HG~tlt~~i~f~~v~~~ 78 (257)
T cd08595 32 LDGYVSALRKGCRCLEIDCWD-G--------------ADNEPVVYHGYTLTSKILFKEVITT 78 (257)
T ss_pred HHHHHHHHHhCCcEEEEEeec-C--------------CCCCcEEecCCCcccccCHHHHHHH
Confidence 367889999999999887755 1 1225678999999988765544333
No 50
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=24.10 E-value=75 Score=31.61 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehhhhhccCCCCCce
Q 016531 300 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPK 364 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ip~~~~~ 364 (388)
.+|+.+|=++|+|+|=|-.=+ + .+| ...|-||.|||..|-+.++=+..||
T Consensus 32 ~~~y~~aL~~GcRcvElD~wd-g----~~~----------eP~V~HG~tlts~i~f~~v~~~I~~ 81 (258)
T cd08630 32 TEAYVRAFAQGCRCVELDCWE-G----PGG----------EPVIYHGHTLTSKILFRDVIQAVRQ 81 (258)
T ss_pred HHHHHHHHHcCCcEEEEEeec-C----CCC----------CcEEeeCCccccceEHHHHHHHHHH
Confidence 578999999999999887765 1 122 4678999999998766655443333
No 51
>PF15250 Raftlin: Raftlin
Probab=24.05 E-value=76 Score=34.05 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.9
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCeEEEee
Q 016531 289 QQPNESINRLIEEAILEAEEKGARVISLG 317 (388)
Q Consensus 289 ~~~~~~in~~ie~ail~ad~~gvkv~sLg 317 (388)
....|.|..+||| |-||-+.|+|.+++=
T Consensus 134 ~~t~e~i~~lIkK-IqdAA~qG~kFVGfv 161 (457)
T PF15250_consen 134 TLTNEIIKELIKK-IQDAASQGMKFVGFV 161 (457)
T ss_pred cCChHHHHHHHHH-HHHHHhccCeEEEEe
Confidence 3468999999999 999999999999875
No 52
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.39 E-value=24 Score=33.68 Aligned_cols=19 Identities=47% Similarity=0.863 Sum_probs=14.1
Q ss_pred cccccceeeeeeeeecccee
Q 016531 3 RRGTYSTFSYSRFYYGECFT 22 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (388)
+|-.|-.|.|+|+ ||||-+
T Consensus 27 ~rRKYyRFR~~r~-YGGiaT 45 (228)
T COG5014 27 ERRKYYRFRYSRY-YGGIAT 45 (228)
T ss_pred chhhhhhhhhhhh-ccceee
Confidence 5667889999985 577644
No 53
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=23.13 E-value=37 Score=34.54 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceee-eccCCC-ceEeecCCceehhhhhccCCC
Q 016531 290 QPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFV-HKNPEL-KIKVVDGSSLAVAVLTNSIPA 360 (388)
Q Consensus 290 ~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v-~k~p~l-~vrvv~g~tl~aavvl~~ip~ 360 (388)
++-+.+-+-+-+|..-|+|.|+.|.+||.------ |. +-.+ -+.|.+ -.|+-.|||+||=++...+=+
T Consensus 87 s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVg-n~--~~n~q~~~~e~t~~~~ttgns~Tayaa~r~Vl~ 156 (351)
T COG5322 87 SRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVG-NL--GQNVQVRNVELTFTRFTTGNSHTAYAACRQVLK 156 (351)
T ss_pred hCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhc-cc--cccccccceEEEEEecccCCccchHHHHHHHHH
Confidence 44666777777888889999999999986422000 00 0001 233443 357788999999877665433
No 54
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=23.00 E-value=1e+02 Score=26.19 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeecccccc
Q 016531 291 PNESINRLIEEAIL-EAEEKGARVISLGLLNQGE 323 (388)
Q Consensus 291 ~~~~in~~ie~ail-~ad~~gvkv~sLg~lNk~~ 323 (388)
+++.|+..|++.+. ++++.|++|.+....+-..
T Consensus 83 ~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~ 116 (128)
T cd03399 83 DRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITD 116 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecC
Confidence 58999999999998 7899999999998765443
No 55
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.81 E-value=68 Score=29.71 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCce--ehhhhhccCCCCCceeeeeecc
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSL--AVAVLTNSIPAEQPKWSLEAFS 371 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl--~aavvl~~ip~~~~~~~l~~~~ 371 (388)
+++++.+.+|++.|.||.=||. +.+.+..--+-..++||+++|.-.||--= ....++.+|-+--.++++.|.+
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~--~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGG--KPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7888888899999999999997 34445555566778999999877766432 2245777777766777777754
No 56
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=22.45 E-value=2.1e+02 Score=23.89 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=33.1
Q ss_pred EEeccCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccc
Q 016531 278 AKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQG 322 (388)
Q Consensus 278 ~ipr~~~qy~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~ 322 (388)
+.||++-++ +.+.+.+.+-+++...+|++++++.|.+=++.-+
T Consensus 78 ~~p~~~~~~--~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG 120 (133)
T smart00506 78 VGPRASGHS--NEGFELLENAYRNCLELAIELGITSVAIPLIGTG 120 (133)
T ss_pred CCCCCCCCC--ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 335665544 5777889999999999999999999988776543
No 57
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=22.36 E-value=99 Score=30.19 Aligned_cols=49 Identities=29% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehhhhhccCCCCCc
Q 016531 300 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQP 363 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ip~~~~ 363 (388)
.+++.+|=++|+|+|=|-.=+ .++-.-+|-||.|+|..+-+.++=+..|
T Consensus 32 ~~~y~~aL~~GcRcvElD~Wd---------------g~~~ep~V~HG~t~ts~i~f~dvl~~I~ 80 (228)
T cd08599 32 TAPIIEALLRGCRVIELDLWP---------------GGRGDICVLHGGTLTKPVKFEDCIKAIK 80 (228)
T ss_pred HHHHHHHHHhCCCEEEEEeec---------------CCCCCeEEEeCCCCcCCcCHHHHHHHHH
Confidence 357889999999999887632 1234577889999998776555433333
No 58
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=22.35 E-value=33 Score=35.76 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=53.4
Q ss_pred eeEEEeccCccccccCCchhH-----------HHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEe
Q 016531 275 QTWAKSKYNMQYFSQQPNESI-----------NRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKV 343 (388)
Q Consensus 275 qtw~ipr~~~qy~~~~~~~~i-----------n~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrv 343 (388)
+||+|=|||+.-.||-.-|=| ...|.+||.-|.+.||-+.++|-+-+-.- ..|.|.-.|--.-+||+
T Consensus 43 Ht~aI~r~Gir~LLp~~IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPG--s~~SL~~ara~GadVri 120 (369)
T TIGR00075 43 HTHTIMKYGLRDLLPENLELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPG--SGGSLLQARAEGADVRI 120 (369)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCC--CCCCHHHHHhCCCCEEE
Confidence 899999999988888876644 47899999999999999999998877542 23455555556666666
Q ss_pred ec
Q 016531 344 VD 345 (388)
Q Consensus 344 v~ 345 (388)
|=
T Consensus 121 VY 122 (369)
T TIGR00075 121 VY 122 (369)
T ss_pred Ee
Confidence 64
No 59
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=22.34 E-value=71 Score=28.85 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccc-cccc----c-cccceeeeccCCCceE
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQ-GEEL----N-RYGGLFVHKNPELKIK 342 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk-~~~l----n-~~g~l~v~k~p~l~vr 342 (388)
+.+++|+.++.++||+|.++|.=+- .++| | ++|..|+...++|+=+
T Consensus 127 ~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~~~~~~~l~~~ 178 (186)
T cd01480 127 GGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALYRENFAELLWS 178 (186)
T ss_pred hhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhhhcchhhhccc
Confidence 4678889999999999998887532 2223 2 4445777777766544
No 60
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.73 E-value=1.2e+02 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 016531 292 NESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 330 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~ 330 (388)
..+-|..+.+++..|+++|+|++++.. |++..+.....
T Consensus 69 ~~g~~~~~~~~~~~a~~~g~~iv~iT~-~~~~~l~~~~d 106 (139)
T cd05013 69 FSGETKETVEAAEIAKERGAKVIAITD-SANSPLAKLAD 106 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEEEcC-CCCChhHHhcC
Confidence 334467788888999999999999987 55555554433
No 61
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=21.60 E-value=1e+02 Score=27.69 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe----------eccccccccc--cccceeeeccCCCc----eE-eecCCceehhhhh
Q 016531 295 INRLIEEAILEAEEKGARVISL----------GLLNQGEELN--RYGGLFVHKNPELK----IK-VVDGSSLAVAVLT 355 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sL----------g~lNk~~~ln--~~g~l~v~k~p~l~----vr-vv~g~tl~aavvl 355 (388)
-|..+.+.|.++.+.|..|.++ |+||..+.-- ...+.+-+++|+.+ .+ |+||+..|++-..
T Consensus 89 ~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~ 166 (195)
T cd03138 89 DNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAM 166 (195)
T ss_pred ccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHH
Confidence 3666777788888999999987 6666543211 12233344556643 33 4579988887543
No 62
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.53 E-value=82 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeec
Q 016531 292 NESINRLIEEAILEAEEKGARVISLGL 318 (388)
Q Consensus 292 ~~~in~~ie~ail~ad~~gvkv~sLg~ 318 (388)
..|-|+.+.+++..|.++|+|++++-.
T Consensus 88 ~sG~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 345689999999999999999999976
No 63
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.49 E-value=71 Score=32.11 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=33.4
Q ss_pred hHHHHHHHHHH-HHhcc---eeEEeecccCcceeeeEEEeccCccccccCCchhHHHHHHHHHHHHHHcCCe
Q 016531 245 WPVTLFSMMIT-WIYGR---TFVVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGAR 312 (388)
Q Consensus 245 wp~~~~~~~~~-w~~~~---~f~~~~~~~~~~~~qtw~ipr~~~qy~~~~~~~~in~~ie~ail~ad~~gvk 312 (388)
-|-...-++.+ |-.|- ..|.. -| .-+|-+| .|.||.+||+|..+|++.|++
T Consensus 210 ~pe~ia~~~~t~~~lglegg~lVaN------------Pv---Pee~eip--~eeie~~I~~a~~eae~~gi~ 264 (310)
T COG2313 210 SPEEIARILATKWQLGLEGGLLVAN------------PV---PEEFEIP--EEEIEALIERALAEAEALGIT 264 (310)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEec------------CC---chhccCC--HHHHHHHHHHHHHHHHHcCCC
Confidence 45555555555 88753 33433 11 2245553 578999999999999998874
No 64
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=21.47 E-value=1e+02 Score=25.28 Aligned_cols=29 Identities=34% Similarity=0.255 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecccc
Q 016531 293 ESINRLIEEAILEAEEKGARVISLGLLNQ 321 (388)
Q Consensus 293 ~~in~~ie~ail~ad~~gvkv~sLg~lNk 321 (388)
..-.-++.++|.+|-+.|.+++.||--|.
T Consensus 110 ~~~~~l~~~~i~~a~~~g~~~~d~g~g~~ 138 (142)
T PF13480_consen 110 SPGRLLLWEAIRWAIERGLRYFDFGGGNE 138 (142)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCh
Confidence 34567788999999999999999997553
No 65
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=21.13 E-value=93 Score=30.91 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehhhhhccC
Q 016531 300 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSI 358 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~i 358 (388)
.+|+.+|=++|+|++=|-.=+- |+-...|-||-|||..|-+.++
T Consensus 32 ~e~y~~aL~~GcRcvElD~Wdg---------------~~~eP~V~HG~Tlts~i~f~dv 75 (253)
T cd08632 32 VDMYARVLQAGCRCVEVDCWDG---------------PDGEPVVHHGYTLTSKITFRDV 75 (253)
T ss_pred HHHHHHHHHcCCcEEEEEeecC---------------CCCCcEEeeCCCCccCcCHHHH
Confidence 4588999999999999887652 2235788999999988765544
No 66
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.61 E-value=1.1e+02 Score=28.45 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecccc
Q 016531 293 ESINRLIEEAILEAEEKGARVISLGLLNQ 321 (388)
Q Consensus 293 ~~in~~ie~ail~ad~~gvkv~sLg~lNk 321 (388)
.|-|+.+.+|+..|.++|+|++++-.-++
T Consensus 121 SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 121 SGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34588899999999999999999987544
No 67
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=20.41 E-value=61 Score=30.43 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=25.3
Q ss_pred CceEeecCCceehhhhhccCCCCCceeeeeeccc
Q 016531 339 LKIKVVDGSSLAVAVLTNSIPAEQPKWSLEAFSL 372 (388)
Q Consensus 339 l~vrvv~g~tl~aavvl~~ip~~~~~~~l~~~~~ 372 (388)
+..|+=|||.|..---|.+.-.|++-|.|||+++
T Consensus 59 vDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~s 92 (182)
T COG4567 59 VDLKLGDGSGLAVIEALRERRADMRIVVLTGYAS 92 (182)
T ss_pred EEeeecCCCchHHHHHHHhcCCcceEEEEecchH
Confidence 6667777777777777777777777777777765
No 68
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=20.40 E-value=41 Score=34.03 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=9.0
Q ss_pred CchhHHHHHHHHHHHHHHcCCe
Q 016531 291 PNESINRLIEEAILEAEEKGAR 312 (388)
Q Consensus 291 ~~~~in~~ie~ail~ad~~gvk 312 (388)
+.+.|++.||+|+.||+++|++
T Consensus 230 ~~~~i~~~I~~Al~ea~~~gi~ 251 (293)
T PF04227_consen 230 DGEEIESAIEQALAEAEEQGIR 251 (293)
T ss_dssp -HHHHHHHHHT-----------
T ss_pred CHHHHHHHHHHHHhhHhhcCCC
Confidence 5668999999999999999984
No 69
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=20.10 E-value=1.1e+02 Score=30.51 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCceehhhhhccCCC
Q 016531 300 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPA 360 (388)
Q Consensus 300 e~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ip~ 360 (388)
.+|+.+|=++|+|++=|-.=+- .+| ...|-||.|||..|-+.++=+
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdg-----~~~----------eP~V~HG~tlts~i~f~~v~~ 77 (258)
T cd08631 32 VEGYIRALKRGCRCVEVDVWDG-----PNG----------EPIVYHGHTFTSKILFKDVVA 77 (258)
T ss_pred HHHHHHHHHcCCcEEEEEeecC-----CCC----------CcEEeeCCcccCCcCHHHHHH
Confidence 5688899999999998877551 122 356899999998776655433
No 70
>PF14501 HATPase_c_5: GHKL domain
Probab=20.06 E-value=1.3e+02 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcC-CeEEEeecccccc
Q 016531 295 INRLIEEAILEAEEKG-ARVISLGLLNQGE 323 (388)
Q Consensus 295 in~~ie~ail~ad~~g-vkv~sLg~lNk~~ 323 (388)
+.+++|.||..+++.+ -|.|++.+-.++.
T Consensus 10 l~nlldNAiea~~~~~~~~~I~i~~~~~~~ 39 (100)
T PF14501_consen 10 LGNLLDNAIEACKKYEDKRFISISIREENG 39 (100)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 5789999999999988 8999998877664
Done!