Query 016531
Match_columns 388
No_of_seqs 236 out of 1231
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jx9_A Putative phosphoheptose 62.8 4.2 0.00014 36.2 2.9 68 287-358 81-158 (170)
2 2od4_A Hypothetical protein; m 40.5 0.52 1.8E-05 37.7 -6.0 48 309-365 35-83 (101)
3 1win_A Flotillin 2; BAND 7 dom 38.8 19 0.00066 30.3 3.0 30 291-320 91-121 (143)
4 2f5t_X Archaeal transcriptiona 33.5 86 0.0029 28.9 6.8 54 297-350 36-92 (233)
5 4gim_A Pseudouridine-5'-phosph 32.8 21 0.00072 35.3 2.5 22 291-312 267-288 (335)
6 2dx6_A Hypothetical protein TT 27.0 1.8E+02 0.0063 24.6 7.4 59 259-322 58-116 (159)
7 4gel_A Mitochondrial cardiolip 26.9 29 0.00098 30.5 2.2 50 297-348 84-146 (220)
8 4fvg_A Stomatin; mixed alpha-b 26.2 45 0.0015 27.6 3.2 28 291-318 86-114 (133)
9 2rpb_A Hypothetical membrane p 25.9 31 0.0011 27.3 2.0 30 291-320 77-107 (113)
10 1tk9_A Phosphoheptose isomeras 25.9 41 0.0014 28.4 3.0 24 295-318 122-145 (188)
11 4ex8_A ALNA; alpha/beta/alpha- 25.8 35 0.0012 33.5 2.7 22 291-312 246-267 (316)
12 2yva_A DNAA initiator-associat 25.7 41 0.0014 28.8 3.0 26 294-319 120-145 (196)
13 3cvj_A Putative phosphoheptose 24.4 42 0.0014 30.1 2.9 26 294-319 119-144 (243)
14 4ggj_A Mitochondrial cardiolip 23.8 37 0.0013 29.9 2.3 53 297-349 72-135 (196)
15 3nyi_A FAT acid-binding protei 23.1 44 0.0015 31.8 2.8 55 298-352 72-130 (297)
16 1x92_A APC5045, phosphoheptose 22.9 50 0.0017 28.3 3.0 24 295-318 125-148 (199)
17 2noc_A Putative periplasmic pr 22.8 86 0.0029 25.6 4.1 43 293-335 49-91 (99)
18 2i2w_A Phosphoheptose isomeras 22.1 50 0.0017 29.0 2.8 23 296-318 144-166 (212)
19 1sh7_A Extracellular subtilisi 21.7 65 0.0022 30.0 3.7 17 297-313 135-151 (284)
20 1m3s_A Hypothetical protein YC 21.0 59 0.002 27.5 3.0 25 295-319 91-115 (186)
No 1
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=62.82 E-value=4.2 Score=36.24 Aligned_cols=68 Identities=13% Similarity=-0.053 Sum_probs=45.0
Q ss_pred cccCCchhHHHHHHHHHHHHHHcCCeEEEeecccccccc----c------cccceeeeccCCCceEeecCCceehhhhhc
Q 016531 287 FSQQPNESINRLIEEAILEAEEKGARVISLGLLNQGEEL----N------RYGGLFVHKNPELKIKVVDGSSLAVAVLTN 356 (388)
Q Consensus 287 ~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~l----n------~~g~l~v~k~p~l~vrvv~g~tl~aavvl~ 356 (388)
++-....+.|..+-+..++|+++|++|+.+-.+-..++. = ..|.+ -.|+-. |+.-.+|++++.|.|
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~an~~p~gll---~~e~g~-r~g~~Sti~~~~i~~ 156 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLL---PAEDGS-RHGLPSLALGAFLLT 156 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEECCCCSCSE---ECTTSC-EECCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHHhCCCCCce---ECCCCC-EechhHHHHHHHHHH
Confidence 333445568998999999999999999999885444432 1 12211 123333 777777777777777
Q ss_pred cC
Q 016531 357 SI 358 (388)
Q Consensus 357 ~i 358 (388)
.|
T Consensus 157 ~i 158 (170)
T 3jx9_A 157 HI 158 (170)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 2
>2od4_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Uncultured marine organism} SCOP: d.58.4.20
Probab=40.55 E-value=0.52 Score=37.67 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=36.0
Q ss_pred cCCeEEEeeccccc-cccccccceeeeccCCCceEeecCCceehhhhhccCCCCCcee
Q 016531 309 KGARVISLGLLNQG-EELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPKW 365 (388)
Q Consensus 309 ~gvkv~sLg~lNk~-~~ln~~g~l~v~k~p~l~vrvv~g~tl~aavvl~~ip~~~~~~ 365 (388)
...||||||+.... -+-|.+..+|+..+|+.. ||-.|...|-++++||
T Consensus 35 wspkvislgaisaefvqsnensgmyiihypdkq---------taisvfdkikpevdev 83 (101)
T 2od4_A 35 WSPKVISLGAISAEFVQSNENSGMYIIHYPDKQ---------TAISVFDKIKPEVDEV 83 (101)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEESSHH---------HHHHHHHHHHHHHHHH
T ss_pred CCccEEEecceeHhhhccCcCCceEEEECCCcc---------ceeehhhccCcchhhh
Confidence 34689999998653 356777889999999864 6777788887777765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=38.84 E-value=19 Score=30.34 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=26.2
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeeccc
Q 016531 291 PNESINRLIEEAIL-EAEEKGARVISLGLLN 320 (388)
Q Consensus 291 ~~~~in~~ie~ail-~ad~~gvkv~sLg~lN 320 (388)
+++.||+.|.+.+. ++++.|++|.+...-+
T Consensus 91 ~R~~i~~~v~~~~~~~~~~~Gi~V~~v~Ikd 121 (143)
T 1win_A 91 DRDQFAKLVREVAAPDVGRMGIEILSFTIKD 121 (143)
T ss_dssp THHHHHHHHHHHHHHHHTTTTEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe
Confidence 68999999999998 6799999999987654
No 4
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=33.51 E-value=86 Score=28.93 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccc-ccccccccceeeecc--CCCceEeecCCcee
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQ-GEELNRYGGLFVHKN--PELKIKVVDGSSLA 350 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk-~~~ln~~g~l~v~k~--p~l~vrvv~g~tl~ 350 (388)
+-|++++.+|.++||.|..+--=+. .+++.+-+..|++.. |...+=++|++...
T Consensus 36 ~~l~~~L~~A~~rGV~V~liv~~~~~~~~l~~~~~~~vr~~~~~~p~~vi~D~~e~l 92 (233)
T 2f5t_X 36 ETIREDLIKTLERGVTVSLYIDKIPDLSEFKGKGNFFVRQFYKLNHLIGMTDGKEVV 92 (233)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCCCGGGTTSSEEEEEECSCCCSEEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCCcchhhhcccceEEEEEccCCCcEEEEEEchhhc
Confidence 6788999999999998877644333 456777777755333 45566667776555
No 5
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=32.80 E-value=21 Score=35.28 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHHHHcCCe
Q 016531 291 PNESINRLIEEAILEAEEKGAR 312 (388)
Q Consensus 291 ~~~~in~~ie~ail~ad~~gvk 312 (388)
..+-|++.||+|+.||++.|++
T Consensus 267 ~~~~i~~~I~~Al~eA~~~gI~ 288 (335)
T 4gim_A 267 PEHTINAAIDQAVAEAEAQGVI 288 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCc
Confidence 4677999999999999999985
No 6
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=27.03 E-value=1.8e+02 Score=24.57 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=42.7
Q ss_pred cceeEEeecccCcceeeeEEEeccCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccc
Q 016531 259 GRTFVVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQG 322 (388)
Q Consensus 259 ~~~f~~~~~~~~~~~~qtw~ipr~~~qy~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~lNk~ 322 (388)
|+..+.+.++|.-...--=+-|+|+ +.+.+.+.+-++++...|++.|+|-|.+=++.-+
T Consensus 58 G~a~it~~~~L~~~~Vih~vgp~~~-----~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG 116 (159)
T 2dx6_A 58 GEAAVTGAGNLPVRYVIHAAVLGDE-----PASLETVRKATKSALEKAVELGLKTVAFPLLGTG 116 (159)
T ss_dssp TCEEEEECTTSSSSEEEEEEEESSS-----CCCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred CcEEEecCCCCCCCEEEEEeCCCCC-----CchHHHHHHHHHHHHHHHHHcCCcEEEECCccCC
Confidence 6677777777753222222347776 4567788888888888999999999999887654
No 7
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=26.90 E-value=29 Score=30.52 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccc----------cccccccceeeeccC---CCceEeecCCc
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQG----------EELNRYGGLFVHKNP---ELKIKVVDGSS 348 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk~----------~~ln~~g~l~v~k~p---~l~vrvv~g~t 348 (388)
+.|-+|+.+|-++||+|==|- +.. +.++.++.......+ ..|.-|+||..
T Consensus 84 ~~I~~aL~~Aa~RGV~VRii~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~ 146 (220)
T 4gel_A 84 LFLADSIKRALQRGVIIRIIS--DGEMVYSKGSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFE 146 (220)
T ss_dssp HHHHHHHHHHHHHTCEEEEEC--CTTTTTSTTCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHH
T ss_pred HHHHHHHHHHHHcCCeEEEEE--echhhhhhHHHHHHHHhcCCcEEeecccccccceeEEEcchh
Confidence 457889999999999986652 221 112333444333333 35778888743
No 8
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=26.24 E-value=45 Score=27.65 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeec
Q 016531 291 PNESINRLIEEAIL-EAEEKGARVISLGL 318 (388)
Q Consensus 291 ~~~~in~~ie~ail-~ad~~gvkv~sLg~ 318 (388)
+++.||..|.+.+. .+++.|++|.+..+
T Consensus 86 ~r~~i~~~i~~~l~~~~~~~GI~V~~V~i 114 (133)
T 4fvg_A 86 DREEIAHHMQSTLDDATDDWGIKVERVEI 114 (133)
T ss_dssp CHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCEEEEEEEE
Confidence 67889999999988 68999999998865
No 9
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=25.87 E-value=31 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeeccc
Q 016531 291 PNESINRLIEEAIL-EAEEKGARVISLGLLN 320 (388)
Q Consensus 291 ~~~~in~~ie~ail-~ad~~gvkv~sLg~lN 320 (388)
+++.|++.|.+.+. ++++.|++|.+...-|
T Consensus 77 ~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~ 107 (113)
T 2rpb_A 77 GRDIINARLREELDKITDRWGVKITRVEIQR 107 (113)
T ss_dssp CHHHHHHHHHHHHHHHHGGGTEECCCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhcCeEEEEEEEEE
Confidence 68999999999998 6799999999887644
No 10
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=25.86 E-value=41 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeec
Q 016531 295 INRLIEEAILEAEEKGARVISLGL 318 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sLg~ 318 (388)
=++.+.+++..|.++|+||+++-.
T Consensus 122 ~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 122 KSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 467788899999999999998865
No 11
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=25.82 E-value=35 Score=33.50 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHHHHHHHcCCe
Q 016531 291 PNESINRLIEEAILEAEEKGAR 312 (388)
Q Consensus 291 ~~~~in~~ie~ail~ad~~gvk 312 (388)
..+-|++.||+|+.||+++|++
T Consensus 246 ~~~~i~~~I~~Al~eA~~~gi~ 267 (316)
T 4ex8_A 246 DEAIVEAAIAEALAQCDQEGIV 267 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCc
Confidence 4556999999999999999984
No 12
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=25.71 E-value=41 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeecc
Q 016531 294 SINRLIEEAILEAEEKGARVISLGLL 319 (388)
Q Consensus 294 ~in~~ie~ail~ad~~gvkv~sLg~l 319 (388)
|=++.+.+|+..|.++|+||+++-.-
T Consensus 120 G~t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 120 GNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34677888999999999999988654
No 13
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=24.43 E-value=42 Score=30.07 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeecc
Q 016531 294 SINRLIEEAILEAEEKGARVISLGLL 319 (388)
Q Consensus 294 ~in~~ie~ail~ad~~gvkv~sLg~l 319 (388)
+-|+.+.+|+..|.++|+|||++-..
T Consensus 119 G~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 119 GRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34678889999999999999988543
No 14
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=23.78 E-value=37 Score=29.91 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCeEEEee-----cccc--cccccc-ccceeeeccC---CCceEeecCCce
Q 016531 297 RLIEEAILEAEEKGARVISLG-----LLNQ--GEELNR-YGGLFVHKNP---ELKIKVVDGSSL 349 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg-----~lNk--~~~ln~-~g~l~v~k~p---~l~vrvv~g~tl 349 (388)
+.|.+|+.+|-++||+|==+- ..|. -+.|.. |-+++..+.+ .-|+=||||.+.
T Consensus 72 ~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~H~K~~viD~~~~ 135 (196)
T 4ggj_A 72 PQLGRAVQLLHQRGVRVRVITDCDYMALNGSQIGLLRKAGIQVRHDQDLGYMHHKFAIVDKKVL 135 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCC---CCHHHHHHHTTCEEEECCSSSCCCCEEEEETTTEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccccccHHHHHHHHhcCCCcccccccccccCcEEEEcceEE
Confidence 457889999999999984431 1111 122333 3345544443 267778888754
No 15
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=23.07 E-value=44 Score=31.76 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCeEEEeeccccccccccc----cceeeeccCCCceEeecCCceehh
Q 016531 298 LIEEAILEAEEKGARVISLGLLNQGEELNRY----GGLFVHKNPELKIKVVDGSSLAVA 352 (388)
Q Consensus 298 ~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~----g~l~v~k~p~l~vrvv~g~tl~aa 352 (388)
.++++..++-+.|-.||++.+.-+--.--.. .+.+-+++|+.+|+|||-.+..++
T Consensus 72 ~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~ViDS~~~s~g 130 (297)
T 3nyi_A 72 SYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVT 130 (297)
T ss_dssp HHHHHHHHHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEEECSCCHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHH
Confidence 3566677777778999999887663211111 122236789999999998876543
No 16
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=22.91 E-value=50 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeec
Q 016531 295 INRLIEEAILEAEEKGARVISLGL 318 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sLg~ 318 (388)
=++.+.+|+..|.++|+||+++-.
T Consensus 125 ~t~~~i~~~~~ak~~g~~vI~IT~ 148 (199)
T 1x92_A 125 NSANVIQAIQAAHDREMLVVALTG 148 (199)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEC
Confidence 367778899999999999999865
No 17
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=22.80 E-value=86 Score=25.57 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeec
Q 016531 293 ESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHK 335 (388)
Q Consensus 293 ~~in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k 335 (388)
.++.+.-++.-.+||++|+|-.-.=..|.+..+-+.-+||-++
T Consensus 49 ~s~~da~~~La~kAd~~GA~~Y~Iis~~~~~~~~~tA~iYk~~ 91 (99)
T 2noc_A 49 MSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK 91 (99)
T ss_dssp CCHHHHHHHHHHHHHHTCCSEEECCSCCSSSSCCCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcEEEEEEeecCc
Confidence 4455555555558999999866555555555666666777644
No 18
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=22.10 E-value=50 Score=29.00 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEeec
Q 016531 296 NRLIEEAILEAEEKGARVISLGL 318 (388)
Q Consensus 296 n~~ie~ail~ad~~gvkv~sLg~ 318 (388)
++.+.+|+..|.++|+||+++-.
T Consensus 144 t~~~i~~~~~ak~~G~~vIaIT~ 166 (212)
T 2i2w_A 144 SANVIKAIAAAREKGMKVITLTG 166 (212)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEC
Confidence 46677889999999999998864
No 19
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=21.75 E-value=65 Score=30.01 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHcCCeE
Q 016531 297 RLIEEAILEAEEKGARV 313 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv 313 (388)
..+++||.+|.++|+-|
T Consensus 135 ~~~~~ai~~a~~~gi~v 151 (284)
T 1sh7_A 135 TALDSAVQGAIQSGVSF 151 (284)
T ss_dssp HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 56778888888888643
No 20
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.04 E-value=59 Score=27.52 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeecc
Q 016531 295 INRLIEEAILEAEEKGARVISLGLL 319 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sLg~l 319 (388)
=++.+.+++..|.++|+||+++-.-
T Consensus 91 ~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 91 ETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3467778889999999999988654
Done!