Query 016531
Match_columns 388
No_of_seqs 236 out of 1231
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 15:08:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016531.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016531hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2noca1 d.230.6.1 (A:1-91) Put 46.4 9.7 0.0007 29.0 4.1 37 299-335 54-91 (91)
2 d1byra_ d.136.1.1 (A:) Nucleas 39.9 12 0.00086 28.9 3.9 52 297-348 39-103 (152)
3 d1pzxa_ c.119.1.1 (A:) Hypothe 38.5 7.4 0.00054 34.6 2.7 54 299-352 68-125 (287)
4 d1pyya2 d.11.1.1 (A:693-750) P 37.6 15 0.0011 24.9 3.7 44 297-350 10-53 (58)
5 d1r57a_ d.108.1.1 (A:) Hypothe 33.4 13 0.00098 27.8 3.1 25 293-317 50-75 (102)
6 d1vkya_ e.53.1.1 (A:) Queuosin 31.1 10 0.00075 34.9 2.4 57 288-346 216-283 (332)
7 d1yx0a1 d.108.1.1 (A:1-151) Hy 30.1 11 0.00079 30.2 2.1 35 289-323 81-118 (151)
8 d1vpua_ g.34.1.1 (A:) HIV-1 VP 29.6 5.7 0.00042 26.7 0.2 17 294-310 2-18 (45)
9 d1qipa_ d.32.1.1 (A:) Glyoxala 28.4 44 0.0032 25.7 5.7 47 299-351 127-174 (176)
10 d1wiha_ d.67.3.1 (A:) Ribosome 28.1 8.1 0.00059 28.9 0.8 19 289-307 40-58 (84)
11 d1z4ea1 d.108.1.1 (A:4-153) Tr 27.5 22 0.0016 26.6 3.4 35 289-323 93-128 (150)
12 d1x94a_ c.80.1.3 (A:) Phosphoh 26.9 20 0.0015 29.7 3.3 41 295-344 123-163 (191)
13 d1sh8a_ d.38.1.5 (A:) Hypothet 26.6 21 0.0015 27.9 3.3 30 288-317 2-31 (153)
14 d1wina_ d.43.2.1 (A:) Flotilli 26.5 19 0.0014 28.1 3.0 39 281-320 82-121 (143)
15 d1snoa_ b.40.1.1 (A:) Staphylo 22.9 12 0.00086 28.8 0.9 17 335-351 4-20 (136)
16 d1t57a_ c.49.1.2 (A:) Hypothet 21.7 39 0.0028 28.7 4.1 36 284-319 5-40 (186)
17 d1xmta_ d.108.1.1 (A:) Hypothe 20.8 35 0.0025 25.4 3.3 23 295-317 50-72 (95)
No 1
>d2noca1 d.230.6.1 (A:1-91) Putative periplasmic protein YahO {Salmonella choleraesuis [TaxId: 28901]}
Probab=46.43 E-value=9.7 Score=29.00 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=26.0
Q ss_pred HHHHHH-HHHHcCCeEEEeeccccccccccccceeeec
Q 016531 299 IEEAIL-EAEEKGARVISLGLLNQGEELNRYGGLFVHK 335 (388)
Q Consensus 299 ie~ail-~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k 335 (388)
+|++|. .||+.|++..-.=..+.+..+.+.-++|-+|
T Consensus 54 ~~~~Ls~KAd~~GA~~y~Iis~~~~~~~~~tA~iYkk~ 91 (91)
T d2noca1 54 AREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK 91 (91)
T ss_dssp HHHHHHHHHHHTCCSEEECCSCCSSSSCCCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCCcEEEEEEEeecC
Confidence 455555 8999999977665555555677777777654
No 2
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=39.85 E-value=12 Score=28.92 Aligned_cols=52 Identities=21% Similarity=0.088 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCeEEEee-cccc---------ccccccccceeeeccC---CCceEeecCCc
Q 016531 297 RLIEEAILEAEEKGARVISLG-LLNQ---------GEELNRYGGLFVHKNP---ELKIKVVDGSS 348 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg-~lNk---------~~~ln~~g~l~v~k~p---~l~vrvv~g~t 348 (388)
..|.+|+.+|-++||+|==+- --+. .+..+.+........+ .-|+=||||.+
T Consensus 39 ~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~K~~ivD~~~ 103 (152)
T d1byra_ 39 PDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDSNFPIQHDKVIIVDNVT 103 (152)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEECSSSCCCCCEEEETTTE
T ss_pred HHHHHHHHHHHhcCCeEEEEEEeecccchhhHHHHHHhhhccccccccccccccccceEEecCce
Confidence 357889999999999995542 1111 1222333333333322 26788888865
No 3
>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=38.47 E-value=7.4 Score=34.58 Aligned_cols=54 Identities=9% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCeEEEeecccccc----ccccccceeeeccCCCceEeecCCceehh
Q 016531 299 IEEAILEAEEKGARVISLGLLNQGE----ELNRYGGLFVHKNPELKIKVVDGSSLAVA 352 (388)
Q Consensus 299 ie~ail~ad~~gvkv~sLg~lNk~~----~ln~~g~l~v~k~p~l~vrvv~g~tl~aa 352 (388)
+++++.+.-+.|-.||++.+..+-- +.+-.-..+..++|+.+|+|+|-.+..++
T Consensus 68 ~~~~~~~~~~~~~~vi~i~iSs~LSgtyn~a~~aa~~~~~~~~~~~i~ViDS~~~s~g 125 (287)
T d1pzxa_ 68 MKELFLPYAKENRPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLG 125 (287)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCCCHHH
T ss_pred HHHHHHHHHhCCCcEEEEECCcccchHHHHHHHHHHHHHhhCCCceEEEEeCCcchHH
Confidence 5667777777788899988776632 22233345667899999999999887654
No 4
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=37.59 E-value=15 Score=24.90 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEeecCCcee
Q 016531 297 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLA 350 (388)
Q Consensus 297 ~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv~g~tl~ 350 (388)
.-.++|+..+++.|.+|-- .|.|.-.+++.|.-..+|-.|++++
T Consensus 10 ~s~~~A~~~l~~~gl~v~~----------~g~g~~V~~Qsp~~Gt~v~~g~~I~ 53 (58)
T d1pyya2 10 WTKETAETLAKWLNIELEF----------QGSGSTVQKQDVRANTAIKDIKKIT 53 (58)
T ss_dssp CBHHHHHHHHHHTTCEEEE----------ESCCSEEEEESSCTTCBGGGCSEEE
T ss_pred CcHHHHHHHHHHcCCEEEE----------ecCceEEEEECCCCCcccCCCCEEE
Confidence 3468999999999999854 3455555688899888888888764
No 5
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=33.42 E-value=13 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=20.9
Q ss_pred hhH-HHHHHHHHHHHHHcCCeEEEee
Q 016531 293 ESI-NRLIEEAILEAEEKGARVISLG 317 (388)
Q Consensus 293 ~~i-n~~ie~ail~ad~~gvkv~sLg 317 (388)
.|| +++++.|+.+|.+.|.||+.+.
T Consensus 50 ~Gig~~Lv~~~l~~Ar~~g~kvvp~c 75 (102)
T d1r57a_ 50 QGVGKKLLKAVVEHARENNLKIIASC 75 (102)
T ss_dssp TCTHHHHHHHHHHHHHHHTCEEEESS
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEEec
Confidence 344 6788899999999999999875
No 6
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]}
Probab=31.10 E-value=10 Score=34.86 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=40.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCeEEEeec-----------cccccccccccceeeeccCCCceEeecC
Q 016531 288 SQQPNESINRLIEEAILEAEEKGARVISLGL-----------LNQGEELNRYGGLFVHKNPELKIKVVDG 346 (388)
Q Consensus 288 ~~~~~~~in~~ie~ail~ad~~gvkv~sLg~-----------lNk~~~ln~~g~l~v~k~p~l~vrvv~g 346 (388)
+-.|.-.|++.--++|.+|.+.|-||++.|- .|..++..|-=.||+ +|.-+.|||||
T Consensus 216 mh~E~~~I~~~t~~~i~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~G~T~lfI--~Pgy~f~~vd~ 283 (332)
T d1vkya_ 216 MHEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIARLPEQEEYVGKTDLFI--YPPFEFKLVDA 283 (332)
T ss_dssp -CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTTSCCCSSEEECCCCCC--CSSCCCSSCSE
T ss_pred CccceeecCHHHHHHHHHHHHcCCcEEEEehHHHHHHHHHHHhccccccCCccceEE--CCCCCceEeCe
Confidence 3345556777778999999999999999882 233344444445665 59999999997
No 7
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}
Probab=30.10 E-value=11 Score=30.20 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=26.1
Q ss_pred cCCchhHH-HHHHHHHHHHHHcCCeEEEe--ecccccc
Q 016531 289 QQPNESIN-RLIEEAILEAEEKGARVISL--GLLNQGE 323 (388)
Q Consensus 289 ~~~~~~in-~~ie~ail~ad~~gvkv~sL--g~lNk~~ 323 (388)
..+..||- ++|+.|+.+|.+.|++.+.| +..+.|+
T Consensus 81 ~~Rg~Glg~~Ll~~~~~~A~~~g~~~i~L~t~~~~~n~ 118 (151)
T d1yx0a1 81 SHLRKGVAKQVLQHIIEEAEKRGYERLSLETGSMASFE 118 (151)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCEECCCSSCTTHH
T ss_pred HHHhCChhHHHHHHHHHHHHHCCCcEEEEEeccccchH
Confidence 34567776 46777777999999999999 4555543
No 8
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=29.61 E-value=5.7 Score=26.69 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHcC
Q 016531 294 SINRLIEEAILEAEEKG 310 (388)
Q Consensus 294 ~in~~ie~ail~ad~~g 310 (388)
.|+++|++-+.+|+.+|
T Consensus 2 kIdrLi~RIrERAEDSG 18 (45)
T d1vpua_ 2 QIDRLIDRITERAEDSG 18 (45)
T ss_dssp CHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHcccCC
Confidence 48999999999999987
No 9
>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.36 E-value=44 Score=25.74 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCC-CceEeecCCceeh
Q 016531 299 IEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPE-LKIKVVDGSSLAV 351 (388)
Q Consensus 299 ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~-l~vrvv~g~tl~a 351 (388)
|++++.+.++.|+|+++=. + +-.+....|+ ++|+ ..|-+|--+.|++
T Consensus 127 ~~~~~~~l~~~Gv~~~~~p--~---~g~~~~~~f~-~DPdG~~IElvq~~~~~~ 174 (176)
T d1qipa_ 127 VYSACKRFEELGVKFVKKP--D---DGKMKGLAFI-QDPDGYWIEILNPNKMAT 174 (176)
T ss_dssp HHHHHHHHHHTTCEEEECT--T---SSSSTTCEEE-ECTTCCEEEEECTTTGGG
T ss_pred HHHHHHHHHHCCCEEeeCC--c---cCCceEEEEE-ECCCCCEEEEEeCCCCCc
Confidence 7888888899999999743 1 1112233455 7888 8888888888765
No 10
>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=28.11 E-value=8.1 Score=28.88 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=16.1
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 016531 289 QQPNESINRLIEEAILEAE 307 (388)
Q Consensus 289 ~~~~~~in~~ie~ail~ad 307 (388)
||..++..+.||+||.+||
T Consensus 40 ~~D~~~~~~~i~kAI~~S~ 58 (84)
T d1wiha_ 40 MASFPECTAAAIKAIRESG 58 (84)
T ss_dssp CTTCTTSHHHHHHHHHTTT
T ss_pred EeecccccHHHHHHHHhcC
Confidence 7776777888999999987
No 11
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]}
Probab=27.51 E-value=22 Score=26.61 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=26.6
Q ss_pred cCCchhHH-HHHHHHHHHHHHcCCeEEEeecccccc
Q 016531 289 QQPNESIN-RLIEEAILEAEEKGARVISLGLLNQGE 323 (388)
Q Consensus 289 ~~~~~~in-~~ie~ail~ad~~gvkv~sLg~lNk~~ 323 (388)
..+..||- +++++++..|.++|++.+.|...-.|+
T Consensus 93 ~~rg~Gig~~l~~~~~~~a~~~g~~~i~l~~~~~N~ 128 (150)
T d1z4ea1 93 AARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRP 128 (150)
T ss_dssp TSTTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTCT
T ss_pred HHcCCChhHHHHHHHHHHHHHcCCCEEEEEEcCCCH
Confidence 45666775 466777779999999999998776665
No 12
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}
Probab=26.87 E-value=20 Score=29.68 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeccCCCceEee
Q 016531 295 INRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVV 344 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sLg~lNk~~~ln~~g~l~v~k~p~l~vrvv 344 (388)
=|+-|-+|+..|.++|+||+++---+ ||.| .+..+.-+.|-
T Consensus 123 ~s~~ii~a~~~Ak~~g~~~i~it~~~-------~~~l--~~~~D~~I~vp 163 (191)
T d1x94a_ 123 NSGNILKAIEAAKAKGMKTIALTGKD-------GGKM--AGLADVEIRVP 163 (191)
T ss_dssp CCHHHHHHHHHHHHHTCEEEEEEETT-------CGGG--TTTSSEEEEES
T ss_pred ccccchhhHHHHHhCCCeEEEEecCC-------CCcc--cccCCEEEEeC
Confidence 37888899999999999999987633 3333 34456666553
No 13
>d1sh8a_ d.38.1.5 (A:) Hypothetical protein PA5026 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.64 E-value=21 Score=27.94 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=24.6
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCeEEEee
Q 016531 288 SQQPNESINRLIEEAILEAEEKGARVISLG 317 (388)
Q Consensus 288 ~~~~~~~in~~ie~ail~ad~~gvkv~sLg 317 (388)
+|-..|.+..++|+.|--++..|++|.++.
T Consensus 2 mp~p~e~~~~l~~~~~pf~~~~Gi~v~~~~ 31 (153)
T d1sh8a_ 2 MPLPTELARHLTEEKIAFVQRSGLRAEVLE 31 (153)
T ss_dssp CSSCHHHHHHHHHHSSHHHHHHTCEEEEEE
T ss_pred CCchHHHHHHHHHccChHHHHcCcEEEEEe
Confidence 455577788889998888999999998875
No 14
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.49 E-value=19 Score=28.14 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=30.3
Q ss_pred ccCccccccCCchhHHHHHHHHHH-HHHHcCCeEEEeeccc
Q 016531 281 KYNMQYFSQQPNESINRLIEEAIL-EAEEKGARVISLGLLN 320 (388)
Q Consensus 281 r~~~qy~~~~~~~~in~~ie~ail-~ad~~gvkv~sLg~lN 320 (388)
++.+.=.+ .+++.|++.|++.|. ++++.|++|.+..+-+
T Consensus 82 ~~~l~el~-~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~d 121 (143)
T d1wina_ 82 TLTVEQIY-QDRDQFAKLVREVAAPDVGRMGIEILSFTIKD 121 (143)
T ss_dssp HSCHHHHH-HTHHHHHHHHHHHHHHHHTTTTEEEEEEECCC
T ss_pred cccHHHHH-hCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEe
Confidence 34443333 478999999999998 7899999999988753
No 15
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]}
Probab=22.85 E-value=12 Score=28.84 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=12.7
Q ss_pred ccCCCceEeecCCceeh
Q 016531 335 KNPELKIKVVDGSSLAV 351 (388)
Q Consensus 335 k~p~l~vrvv~g~tl~a 351 (388)
|.|-.=+||+||+|+..
T Consensus 4 ~~~a~V~~V~DGDT~~v 20 (136)
T d1snoa_ 4 KEPATLIKAIDGDTVKL 20 (136)
T ss_dssp EEEEEEEEECSSSEEEE
T ss_pred ccceEEEEEEcCCEEEE
Confidence 34445579999999985
No 16
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.74 E-value=39 Score=28.65 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=31.6
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHcCCeEEEeecc
Q 016531 284 MQYFSQQPNESINRLIEEAILEAEEKGARVISLGLL 319 (388)
Q Consensus 284 ~qy~~~~~~~~in~~ie~ail~ad~~gvkv~sLg~l 319 (388)
+-||-....+-=++.+|.|+.+|++.|+|-+-++-.
T Consensus 5 i~YF~~~G~~NT~~~l~~a~~ra~elgi~~iVvASt 40 (186)
T d1t57a_ 5 ICYFEEPGKENTERVLELVGERADQLGIRNFVVASV 40 (186)
T ss_dssp EEEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred eEEecCCCcccHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 358999999999999999999999999988877643
No 17
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.84 E-value=35 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEee
Q 016531 295 INRLIEEAILEAEEKGARVISLG 317 (388)
Q Consensus 295 in~~ie~ail~ad~~gvkv~sLg 317 (388)
-.+++++|+..|.+.|.||+.+.
T Consensus 50 a~~Lv~~al~~ar~~g~kV~P~C 72 (95)
T d1xmta_ 50 ASHLCVAAFEHASSHSISIIPSC 72 (95)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEEeC
Confidence 46778888889999999999764
Done!