BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016532
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L G D + E+F IG++K +K+TG+P + LY DK T + KG+ATV+++D
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+FHGN+I V A R P
Sbjct: 293 PPSAKAAIDWFDGKEFHGNIIKVSFATRR---------------PEFMRGGGSGGGRRGR 337
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175
G K+ GDW+CPN SC N+NFA R CN+C RP
Sbjct: 338 GGYRGRGGFQGRGGDPKS----GDWVCPNPSCGNMNFARRNSCNQCNEPRP 384
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N ++YV L D LA++F G++K +KRTG+P + +Y DK T + KGDATV+YED
Sbjct: 360 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 419
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESR--------------GKDDHAYNSAAAAGDPT 110
P A AAVEWF+ KDF G+ + V +A + G+ G
Sbjct: 420 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGG 479
Query: 111 VAGDVSGLDENSRDVNGFAGRG----RGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGV 166
G + + D GF RG RG G + GDW CPN C N NFA+R
Sbjct: 480 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTE 539
Query: 167 CNRC 170
CN+C
Sbjct: 540 CNQC 543
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 215 DWSCPM--CGNINWAKRTKCNICNTNK 239
DW CP CGN N+A RT+CN C K
Sbjct: 521 DWQCPNPGCGNQNFAWRTECNQCKAPK 547
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N ++YV L D LA++F G++K +KRTG+P + +Y DK T + KGDATV+YED
Sbjct: 359 NSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 418
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESR--------------GKDDHAYNSAAAAGDPT 110
P A AAVEWF+ KDF G+ + V +A + G+ G
Sbjct: 419 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGG 478
Query: 111 VAGDVSGLDENSRDVNGFAGRG----RGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGV 166
G + + D GF RG RG G + GDW CPN C N NFA+R
Sbjct: 479 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTE 538
Query: 167 CNRC 170
CN+C
Sbjct: 539 CNQC 542
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 215 DWSCPM--CGNINWAKRTKCNICNTNK 239
DW CP CGN N+A RT+CN C K
Sbjct: 520 DWQCPNPGCGNQNFAWRTECNQCKAPK 546
>sp|P56959|FUS_MOUSE RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1
Length = 518
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L + +A+YF IG++K +K+TG+P + LY D+ T + KG+ATV+++D
Sbjct: 277 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 336
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+F GN I V A R D G G +
Sbjct: 337 PPSAKAAIDWFDGKEFSGNPIKVSFATRRA--DFNRGGGNGRGGRGRGGPMGRGGYGGGG 394
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRC 170
G G G G Q+ GDW CPN +C N+NF++R CN+C
Sbjct: 395 SGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQC 440
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L + +A+YF IG++K +K+TG+P + LY D+ T + KG+ATV+++D
Sbjct: 271 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 330
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+F GN I V A R D G G +
Sbjct: 331 PPSAKAAIDWFDGKEFSGNPIKVSFATRRA--DFNRGGGNGRGGRGRGGPMGRGGYGGGG 388
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRC 170
G G G G Q+ GDW CPN +C N+NF++R CN+C
Sbjct: 389 SGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQC 434
>sp|P35637|FUS_HUMAN RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1
Length = 526
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L + +A+YF IG++K +K+TG+P + LY D+ T + KG+ATV+++D
Sbjct: 284 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 343
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+F GN I V A R D G G +
Sbjct: 344 PPSAKAAIDWFDGKEFSGNPIKVSFATRRA--DFNRGGGNGRGGRGRGGPMGRGGYGGGG 401
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRC 170
G G G G Q+ GDW CPN +C N+NF++R CN+C
Sbjct: 402 SGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQC 447
>sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2 OS=Gallus
gallus GN=ZRANB2 PE=2 SV=1
Length = 334
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 76/140 (54%), Gaps = 21/140 (15%)
Query: 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQI 204
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 9 SDGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK------- 59
Query: 205 GAATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELE 264
+ GLF NDW C CGN+NWA+R++CN+CNT P + + R G GGG+ E E +E
Sbjct: 60 --SRGLFSANDWQCKTCGNVNWARRSECNMCNT--PKYAKLEERTGYGGGFNE--RENVE 113
Query: 265 ETKRRRREAEADDGELYDEF 284
+R E DGE YDEF
Sbjct: 114 YIER-----EESDGE-YDEF 127
>sp|Q19QU3|ZRAB2_PIG Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa
GN=ZRANB2 PE=2 SV=1
Length = 328
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 75/140 (53%), Gaps = 21/140 (15%)
Query: 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQI 204
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 9 SDGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK------- 59
Query: 205 GAATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELE 264
+ GLF NDW C C N+NWA+R++CN+CNT P + + R G GGG+ E E +E
Sbjct: 60 --SRGLFSANDWQCKTCSNVNWARRSECNMCNT--PKYAKLEERTGYGGGFNE--RENVE 113
Query: 265 ETKRRRREAEADDGELYDEF 284
+R E DGE YDEF
Sbjct: 114 YIER-----EESDGE-YDEF 127
>sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing protein 2 OS=Rattus
norvegicus GN=Zranb2 PE=2 SV=2
Length = 330
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 75/140 (53%), Gaps = 21/140 (15%)
Query: 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQI 204
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 9 SDGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK------- 59
Query: 205 GAATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELE 264
+ GLF NDW C C N+NWA+R++CN+CNT P + + R G GGG+ E E +E
Sbjct: 60 --SRGLFSANDWQCKTCSNVNWARRSECNMCNT--PKYAKLEERTGYGGGFNE--RENVE 113
Query: 265 ETKRRRREAEADDGELYDEF 284
+R E DGE YDEF
Sbjct: 114 YIER-----EESDGE-YDEF 127
>sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus
GN=Zranb2 PE=1 SV=2
Length = 330
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 75/140 (53%), Gaps = 21/140 (15%)
Query: 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQI 204
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 9 SDGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK------- 59
Query: 205 GAATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELE 264
+ GLF NDW C C N+NWA+R++CN+CNT P + + R G GGG+ E E +E
Sbjct: 60 --SRGLFSANDWQCKTCSNVNWARRSECNMCNT--PKYAKLEERTGYGGGFNE--RENVE 113
Query: 265 ETKRRRREAEADDGELYDEF 284
+R E DGE YDEF
Sbjct: 114 YIER-----EESDGE-YDEF 127
>sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens
GN=ZRANB2 PE=1 SV=2
Length = 330
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 75/139 (53%), Gaps = 21/139 (15%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEE 265
+ GLF NDW C C N+NWA+R++CN+CNT P + + R G GGG+ E E +E
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNT--PKYAKLEERTGYGGGFNE--RENVEY 114
Query: 266 TKRRRREAEADDGELYDEF 284
+R E DGE YDEF
Sbjct: 115 IER-----EESDGE-YDEF 127
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%)
Query: 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATV 60
M +++V + T E + +FG IG++KKDKRT +PK+WLY++K T KG+ATV
Sbjct: 115 MITQEDTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATV 174
Query: 61 TYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91
TY+D +AA +A+EWF+ +DF+GN I V +A+
Sbjct: 175 TYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQ 205
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 215 DWSCPMCGNINWAKRTKCNICNTNK 239
DW C C N N+A R +CN C T K
Sbjct: 278 DWKCNSCNNTNFAWRNECNRCKTPK 302
>sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii
GN=ZRANB2 PE=2 SV=1
Length = 320
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 75/139 (53%), Gaps = 21/139 (15%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEE 265
+ GLF NDW C C N+NWA+R++CN+CNT P + + R G GGG+ E E +E
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNT--PKYAKLEERTGYGGGFNE--RENVEY 114
Query: 266 TKRRRREAEADDGELYDEF 284
+R E DGE YDEF
Sbjct: 115 IER-----EESDGE-YDEF 127
>sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana
GN=At1g67325 PE=1 SV=1
Length = 288
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 26/100 (26%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCN--RCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQ 203
D DW CPN C NVNF+FR VCN +C T +P G++ G +
Sbjct: 195 DNDWTCPN--CGNVNFSFRTVCNMRKCNTPKP------------------GSQQGGSSDK 234
Query: 204 IGAATGLFGPNDWSCPMCGNINWAKRTKCN--ICNTNKPG 241
I G W C CGNIN+ R+KCN C +KPG
Sbjct: 235 ISKQNAPEG--SWKCDNCGNINYPFRSKCNRQNCGADKPG 272
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 214 NDWSCPMCGNINWAKRTKCNI--CNTNKPGHNEGG 246
NDW+CP CGN+N++ RT CN+ CNT KPG +GG
Sbjct: 196 NDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQQGG 230
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 214 NDWSCPMCGNINWAKRTKCNICNTNKP 240
+DW CP CGN+N++ RT CN+ N +P
Sbjct: 24 DDWICPSCGNVNFSFRTTCNMRNCTQP 50
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 148 DWMCPNTSCSNVNFAFRGVCN--RCGTARPV 176
DW+CP SC NVNF+FR CN C RP
Sbjct: 25 DWICP--SCGNVNFSFRTTCNMRNCTQPRPA 53
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 134 GRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNR--CGTARP 175
G D + K +G W C N C N+N+ FR CNR CG +P
Sbjct: 230 GSSDKISKQNAPEGSWKCDN--CGNINYPFRSKCNRQNCGADKP 271
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 260 EEELEETKRRRREAEADDGELYDEFGNLKKKFRAKTQQVEAAQVLPGAGRAGWEVEELGV 319
++ELE+ + + ++ E + G D ++K R K Q E + GR + +EL
Sbjct: 783 DKELEKGREKDQDKELEKGREKDRDKEMEKA-REKDQDKELEK-----GREKDQDKEL-- 834
Query: 320 TDRDGRERSRDRGRERE-DRGSNKKRGGDDRERHRSRSRERDRGRDRDREYDYERAREYE 378
G+E+ RD+ RE++ D+ +K R D+ R + R + R++ RD+ RE D E+ RE +
Sbjct: 835 --EKGQEKDRDKVREKDRDKVRDKDR---DKVREKDRDKVREKDRDKLREKDREKIRERD 889
Query: 379 RGRDRMRYR 387
R + R + R
Sbjct: 890 RDKGREKDR 898
Score = 41.6 bits (96), Expect = 0.010, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 254 GYKELDEEELEETKRRRREAEADDGELYDEFGNLKK---KFRAKTQQVEAAQVLPGAGRA 310
G ++ ++E+E+ + + ++ E + G D+ L+K K R K ++ + +V
Sbjct: 801 GREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDK 860
Query: 311 GWEVEELGVTDRDG---RERSRDRGRERE-DRGSNKKRGGDDRERHRSRSRERDRGRDRD 366
E + V ++D RE+ R++ RER+ D+G K DR++ + ++RE+D+ ++R
Sbjct: 861 VREKDRDKVREKDRDKLREKDREKIRERDRDKGREK-----DRDKEQVKTREKDQEKERL 915
Query: 367 REYDYERAR 375
++ D ER +
Sbjct: 916 KDRDKEREK 924
Score = 41.6 bits (96), Expect = 0.010, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 313 EVEELGVTDR---DGRERSRDRGREREDRGSNKKRGGDDRERHRSRSRERDRGRDRDREY 369
E E+ V D+ GRE+ ++GR++E +K R++ + R ++R +DR +E
Sbjct: 683 EQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQ 742
Query: 370 DYERAREYERGRDRMRYR 387
+ R +E +GRD+ R +
Sbjct: 743 EKVRDKEQVKGRDKKRSK 760
Score = 38.1 bits (87), Expect = 0.12, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 326 ERSRDRGREREDRGSNKKRGGDDRERHRSRSRERDRGRDRD----REYDYERAREYERGR 381
E +RD+ +E+E G G ++E + R +ER + +++D R+ + E+ R ER +
Sbjct: 677 EHNRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVK 736
Query: 382 DRMR 385
DR++
Sbjct: 737 DRVK 740
Score = 38.1 bits (87), Expect = 0.12, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 32/149 (21%)
Query: 254 GYKELDEEELEE--TKRRRREAEADDGELYD---EFGNLKKKFRAKTQQVEAAQVLPGAG 308
G ++ E+ELE+ K R ++ E D + D E G K++ + + ++ E +
Sbjct: 693 GLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVR------ 746
Query: 309 RAGWEVEELGVTDRDGRERSRDRGRERE---DRGSNKKR-GGDDRERHRSRSRERDR--- 361
++ V RD ++RS+D + RE D+ K R D+E + R +++D+
Sbjct: 747 ------DKEQVKGRD-KKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELE 799
Query: 362 -GRDRDREYDYERAR------EYERGRDR 383
GR++DR+ + E+AR E E+GR++
Sbjct: 800 KGREKDRDKEMEKAREKDQDKELEKGREK 828
Score = 37.0 bits (84), Expect = 0.25, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 227 AKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEADDGELYDEFGN 286
+K + + +++ HN + G K L++ +E ++ R + D E E G
Sbjct: 663 SKGRRSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGR 722
Query: 287 LKKKFRAKTQQVEAAQVLPGAGRAGWEVEELGVTDRD---GRERSRDRGREREDRGSNKK 343
K+ + + ++ +V E+ V D++ GR++ R + E+ K
Sbjct: 723 DKEVEKGRYKERVKDRV----------KEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDK 772
Query: 344 RGGDDRERHRSRSRERDRGRDRDREYDYERAREYERGRDRMRYR 387
DRE+++ + E+ R +D+D+E E+ RE +R ++ + R
Sbjct: 773 ELEKDREKNQDKELEKGREKDQDKE--LEKGREKDRDKEMEKAR 814
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 323 DGR-ERSRDRGRER---EDRGSNKKRGGDDRERHR---SRSRERDRGRDRDREYDYERAR 375
+GR E SRD ER +D S+K R D + R +R +E+++ + D+ + R +
Sbjct: 641 EGRSELSRDCKEERHREKDSDSSKGRRSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGREK 700
Query: 376 EYERGRDRMRYR 387
E E+GRD+ R +
Sbjct: 701 ELEKGRDKERVK 712
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 9/63 (14%)
Query: 326 ERSRDRGRERE-----DRGSNKKRGGDDRERHRSRSRERDRGRDRDREYDYERAREYERG 380
ERS D+GRERE DR +K R DRE+ ++R +ER+R +DR+RE + ER ++ ++
Sbjct: 198 ERS-DKGRERERTKDRDRDKDKSR---DREKDKTREKEREREKDRNREKERERDKDRDKK 253
Query: 381 RDR 383
++R
Sbjct: 254 KER 256
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 349 RERHRSRSRERDRGRDRDREYDYERAREYERGRDRMRYR 387
RER R++ R+RD+ + RDRE D R +E ER +DR R +
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKEREREKDRNREK 242
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 37/52 (71%), Gaps = 4/52 (7%)
Query: 325 RERSRDRGRERE---DRGSNKKRGGD-DRERHRSRSRERDRGRDRDREYDYE 372
RER++DR R+++ DR +K R + +RE+ R+R +ER+R +DRD++ + E
Sbjct: 206 RERTKDRDRDKDKSRDREKDKTREKEREREKDRNREKERERDKDRDKKKERE 257
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 326 ERSRDRGREREDRGSNKKRGG-DDRERHRSRSRERDRGRDRDREYDYERAREYERG 380
ERS DRG ER DRG RG DRE+ RSR++ER+R RDRD + ER RE + G
Sbjct: 1259 ERS-DRG-ERSDRGERSDRGERSDREKERSRAKERERDRDRDLKGQRERKRERDDG 1312
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 321 DRDGRERSRDRGREREDRGSNKKRGG-DDRERHRSRSRERDRGRDRDREYDYERAREYER 379
DR R DRG ER DRG RG DR R DRG DRE + RA+E ER
Sbjct: 1235 DRSSRNERSDRG-ERSDRGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERER 1293
Query: 380 GRDR 383
RDR
Sbjct: 1294 DRDR 1297
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTY 62
M++ +++ + + DED L E F G + D R + D+ T +G VT+
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVV-DTR-------VILDRETGRSRGFGFVTF 88
Query: 63 EDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93
AA +A++ + +D HG ++ V A R
Sbjct: 89 TSSEAASSAIQALDGRDLHGRVVKVNYANDR 119
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 342 KKRGGDDRERHRSRSRERDRGRDRDREYDYERAREYERGRDRMRYR 387
KKRGGD R + R R R+R+ D +R R G DR RYR
Sbjct: 19 KKRGGDARSPQQDAQPLSSRDRVRERDEDKDRERHRRHGEDRERYR 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,853,272
Number of Sequences: 539616
Number of extensions: 8841615
Number of successful extensions: 60075
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 918
Number of HSP's that attempted gapping in prelim test: 38671
Number of HSP's gapped (non-prelim): 12040
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)