Query 016532
Match_columns 388
No_of_seqs 480 out of 2276
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1995 Conserved Zn-finger pr 100.0 1.4E-27 3.1E-32 230.2 17.6 194 3-259 64-266 (351)
2 PLN03134 glycine-rich RNA-bind 99.8 7.3E-18 1.6E-22 148.0 14.9 84 4-95 33-116 (144)
3 KOG0113 U1 small nuclear ribon 99.7 5E-17 1.1E-21 153.5 15.3 86 6-99 102-187 (335)
4 TIGR01659 sex-lethal sex-letha 99.6 5.9E-15 1.3E-19 146.9 14.6 84 4-95 192-277 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 7.5E-15 1.6E-19 145.7 12.2 82 6-95 270-351 (352)
6 KOG0415 Predicted peptidyl pro 99.6 6.5E-15 1.4E-19 141.9 8.5 87 1-95 235-321 (479)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.8E-14 3.9E-19 142.9 11.1 83 4-94 2-84 (352)
8 TIGR01659 sex-lethal sex-letha 99.5 1.9E-14 4E-19 143.4 10.6 82 4-93 106-187 (346)
9 KOG0107 Alternative splicing f 99.5 1.4E-14 3E-19 127.9 8.3 79 4-95 9-87 (195)
10 PF00076 RRM_1: RNA recognitio 99.5 3.7E-14 8.1E-19 107.2 9.7 70 8-86 1-70 (70)
11 KOG0122 Translation initiation 99.5 2.3E-14 4.9E-19 132.5 9.3 82 4-93 188-269 (270)
12 KOG4207 Predicted splicing fac 99.5 1.7E-13 3.6E-18 124.0 8.8 83 5-95 13-95 (256)
13 PF14259 RRM_6: RNA recognitio 99.4 8E-13 1.7E-17 100.8 9.0 70 8-86 1-70 (70)
14 KOG0121 Nuclear cap-binding pr 99.4 3.8E-13 8.3E-18 113.3 7.2 82 3-92 34-115 (153)
15 KOG0149 Predicted RNA-binding 99.4 3.5E-13 7.5E-18 124.2 7.5 78 6-92 13-90 (247)
16 KOG0126 Predicted RNA-binding 99.4 3.6E-14 7.9E-19 125.9 -0.1 81 3-91 33-113 (219)
17 KOG0105 Alternative splicing f 99.4 1.6E-12 3.4E-17 115.9 9.6 78 4-92 5-82 (241)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.1E-12 4.6E-17 134.5 11.7 82 5-94 295-376 (509)
19 KOG0130 RNA-binding protein RB 99.4 1.1E-12 2.4E-17 111.5 7.3 83 5-95 72-154 (170)
20 PLN03120 nucleic acid binding 99.4 2.8E-12 6E-17 121.5 10.8 78 4-93 3-80 (260)
21 TIGR01622 SF-CC1 splicing fact 99.4 2.2E-12 4.8E-17 132.7 11.0 80 5-92 186-265 (457)
22 PLN03213 repressor of silencin 99.4 1.7E-12 3.7E-17 129.9 9.5 78 4-93 9-88 (759)
23 TIGR01645 half-pint poly-U bin 99.4 2.5E-12 5.5E-17 135.4 11.3 83 5-95 204-286 (612)
24 TIGR01648 hnRNP-R-Q heterogene 99.4 8.6E-12 1.9E-16 131.1 14.6 77 4-96 232-310 (578)
25 TIGR01645 half-pint poly-U bin 99.3 2.9E-12 6.4E-17 135.0 10.5 80 4-91 106-185 (612)
26 smart00362 RRM_2 RNA recogniti 99.3 6.1E-12 1.3E-16 93.8 9.2 72 7-88 1-72 (72)
27 KOG0111 Cyclophilin-type pepti 99.3 6.8E-13 1.5E-17 121.0 4.5 87 1-95 6-92 (298)
28 KOG0145 RNA-binding protein EL 99.3 2.7E-12 5.8E-17 119.7 8.3 83 5-95 41-123 (360)
29 TIGR01628 PABP-1234 polyadenyl 99.3 4.5E-12 9.8E-17 134.0 10.9 79 6-92 1-79 (562)
30 TIGR01622 SF-CC1 splicing fact 99.3 4.9E-12 1.1E-16 130.1 10.9 81 4-93 88-168 (457)
31 COG0724 RNA-binding proteins ( 99.3 7.7E-12 1.7E-16 116.1 10.3 80 5-92 115-194 (306)
32 KOG0125 Ataxin 2-binding prote 99.3 4.7E-12 1E-16 121.4 8.2 83 4-96 95-177 (376)
33 PLN03121 nucleic acid binding 99.3 1.2E-11 2.6E-16 115.6 10.7 80 1-92 1-80 (243)
34 smart00360 RRM RNA recognition 99.3 1.3E-11 2.8E-16 91.5 8.9 71 10-88 1-71 (71)
35 TIGR01628 PABP-1234 polyadenyl 99.3 1.1E-11 2.4E-16 131.1 11.2 82 4-94 284-365 (562)
36 KOG0148 Apoptosis-promoting RN 99.3 2.6E-11 5.6E-16 113.8 12.2 80 2-95 161-240 (321)
37 KOG4198 RNA-binding Ran Zn-fin 99.3 4.2E-12 9.1E-17 121.2 6.3 100 141-243 57-168 (280)
38 TIGR01648 hnRNP-R-Q heterogene 99.3 1E-11 2.2E-16 130.6 9.6 77 5-90 58-135 (578)
39 KOG1995 Conserved Zn-finger pr 99.3 3.9E-11 8.4E-16 116.7 12.1 146 145-303 68-244 (351)
40 cd00590 RRM RRM (RNA recogniti 99.3 5E-11 1.1E-15 89.3 9.9 74 7-89 1-74 (74)
41 KOG1548 Transcription elongati 99.2 2.3E-11 5E-16 117.5 9.0 93 4-97 133-225 (382)
42 KOG0117 Heterogeneous nuclear 99.2 2.3E-11 5E-16 120.8 9.2 81 5-93 83-164 (506)
43 KOG0117 Heterogeneous nuclear 99.2 5.4E-11 1.2E-15 118.2 10.7 80 4-99 258-337 (506)
44 KOG0108 mRNA cleavage and poly 99.2 3.8E-11 8.1E-16 122.1 8.7 82 6-95 19-100 (435)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.1E-10 2.4E-15 121.4 11.4 78 4-94 274-352 (481)
46 KOG0114 Predicted RNA-binding 99.2 1E-10 2.2E-15 95.4 8.4 78 5-93 18-95 (124)
47 KOG0131 Splicing factor 3b, su 99.2 4E-11 8.7E-16 106.8 6.1 81 4-92 8-88 (203)
48 KOG0148 Apoptosis-promoting RN 99.1 8.1E-11 1.7E-15 110.5 7.4 81 6-94 63-143 (321)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.8E-10 3.9E-15 119.9 10.5 77 4-94 1-79 (481)
50 KOG0145 RNA-binding protein EL 99.1 2E-10 4.3E-15 107.3 9.1 80 6-93 279-358 (360)
51 KOG0127 Nucleolar protein fibr 99.1 2.6E-10 5.6E-15 115.7 9.6 82 5-94 292-379 (678)
52 KOG0146 RNA-binding protein ET 99.1 7.4E-11 1.6E-15 110.6 5.2 86 3-96 283-368 (371)
53 KOG0144 RNA-binding protein CU 99.1 1.2E-10 2.7E-15 115.2 6.2 85 4-97 123-210 (510)
54 smart00361 RRM_1 RNA recogniti 99.1 6E-10 1.3E-14 85.6 7.9 61 19-87 2-69 (70)
55 KOG0127 Nucleolar protein fibr 99.0 6.2E-10 1.3E-14 113.0 8.5 82 5-95 117-198 (678)
56 KOG0144 RNA-binding protein CU 99.0 5.1E-10 1.1E-14 110.9 7.2 85 4-96 33-120 (510)
57 KOG0131 Splicing factor 3b, su 99.0 7.3E-10 1.6E-14 98.8 6.7 85 5-96 96-180 (203)
58 PF13893 RRM_5: RNA recognitio 99.0 2.1E-09 4.6E-14 78.6 7.9 56 22-90 1-56 (56)
59 KOG4208 Nucleolar RNA-binding 99.0 1.4E-09 3E-14 98.8 7.9 82 4-93 48-130 (214)
60 KOG0109 RNA-binding protein LA 99.0 6.6E-10 1.4E-14 105.4 6.0 75 6-96 3-77 (346)
61 KOG0147 Transcriptional coacti 99.0 6.7E-10 1.5E-14 113.0 5.9 81 7-95 280-360 (549)
62 KOG0116 RasGAP SH3 binding pro 99.0 6E-09 1.3E-13 105.6 12.3 82 6-96 289-370 (419)
63 KOG0124 Polypyrimidine tract-b 99.0 4.9E-10 1.1E-14 108.9 4.2 76 6-89 114-189 (544)
64 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1.2E-09 2.6E-14 113.9 7.3 83 3-90 173-257 (509)
65 KOG4212 RNA-binding protein hn 98.9 1.4E-08 3E-13 101.0 11.4 81 5-94 44-125 (608)
66 KOG4206 Spliceosomal protein s 98.9 6.6E-09 1.4E-13 95.7 8.0 83 3-96 7-93 (221)
67 KOG0109 RNA-binding protein LA 98.9 3.3E-09 7.1E-14 100.7 6.0 76 4-95 77-152 (346)
68 KOG0123 Polyadenylate-binding 98.7 2.8E-08 6.1E-13 100.0 8.6 81 4-95 75-155 (369)
69 KOG0110 RNA-binding protein (R 98.7 3.6E-08 7.7E-13 103.1 8.7 78 6-91 516-596 (725)
70 KOG4205 RNA-binding protein mu 98.7 4.8E-08 1E-12 95.7 8.5 86 5-99 97-182 (311)
71 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.3E-08 7.1E-13 100.9 7.3 82 5-94 405-486 (940)
72 KOG1457 RNA binding protein (c 98.7 1.3E-07 2.9E-12 86.9 10.1 86 5-97 34-122 (284)
73 KOG4198 RNA-binding Ran Zn-fin 98.7 3E-08 6.4E-13 95.0 5.6 98 143-242 135-270 (280)
74 KOG0533 RRM motif-containing p 98.7 8.5E-08 1.9E-12 90.6 8.7 84 4-96 82-165 (243)
75 KOG4205 RNA-binding protein mu 98.6 3E-08 6.4E-13 97.1 4.9 84 4-96 5-88 (311)
76 KOG0132 RNA polymerase II C-te 98.6 8.6E-08 1.9E-12 101.0 7.6 79 4-96 420-498 (894)
77 KOG0124 Polypyrimidine tract-b 98.6 1E-07 2.3E-12 92.9 7.4 82 6-95 211-292 (544)
78 KOG0146 RNA-binding protein ET 98.6 5.7E-08 1.2E-12 91.4 5.3 83 4-95 18-103 (371)
79 KOG0123 Polyadenylate-binding 98.6 1.3E-07 2.9E-12 95.1 8.2 76 6-95 2-77 (369)
80 PF04059 RRM_2: RNA recognitio 98.6 3.6E-07 7.8E-12 74.8 8.9 82 6-93 2-87 (97)
81 KOG0153 Predicted RNA-binding 98.6 1.6E-07 3.5E-12 91.2 7.7 74 5-92 228-302 (377)
82 KOG0110 RNA-binding protein (R 98.5 6.3E-08 1.4E-12 101.3 4.4 83 5-95 613-695 (725)
83 KOG4212 RNA-binding protein hn 98.5 2.4E-07 5.1E-12 92.3 7.4 76 2-90 533-608 (608)
84 KOG4209 Splicing factor RNPS1, 98.5 4.9E-07 1.1E-11 85.4 8.1 83 2-93 98-180 (231)
85 PF00641 zf-RanBP: Zn-finger i 98.4 7.4E-08 1.6E-12 61.8 0.9 30 212-241 1-30 (30)
86 KOG4454 RNA binding protein (R 98.4 1.2E-07 2.7E-12 86.9 1.8 79 4-92 8-86 (267)
87 KOG0226 RNA-binding proteins [ 98.4 3.6E-07 7.8E-12 85.6 4.2 83 4-94 189-271 (290)
88 KOG0106 Alternative splicing f 98.3 5.8E-07 1.3E-11 83.4 4.1 72 6-93 2-73 (216)
89 KOG4676 Splicing factor, argin 98.2 1.1E-06 2.5E-11 86.5 4.6 76 6-90 8-86 (479)
90 KOG4211 Splicing factor hnRNP- 98.2 5.7E-06 1.2E-10 83.9 8.0 79 5-95 10-88 (510)
91 smart00547 ZnF_RBZ Zinc finger 98.1 1.2E-06 2.6E-11 54.2 1.7 26 214-239 1-26 (26)
92 KOG0151 Predicted splicing reg 98.1 4.3E-06 9.3E-11 87.8 6.7 84 3-94 172-258 (877)
93 KOG4849 mRNA cleavage factor I 98.1 4.1E-06 8.9E-11 81.6 5.1 78 6-89 81-158 (498)
94 KOG0120 Splicing factor U2AF, 98.0 4.9E-06 1.1E-10 85.9 4.6 83 4-94 288-370 (500)
95 KOG4660 Protein Mei2, essentia 98.0 5E-06 1.1E-10 85.4 4.3 71 3-86 73-143 (549)
96 KOG4211 Splicing factor hnRNP- 97.9 2.6E-05 5.5E-10 79.2 7.2 81 4-93 102-182 (510)
97 KOG4206 Spliceosomal protein s 97.8 5.9E-05 1.3E-09 69.9 7.9 78 1-91 142-220 (221)
98 KOG1457 RNA binding protein (c 97.8 2.2E-05 4.7E-10 72.6 4.3 65 5-81 210-274 (284)
99 KOG1190 Polypyrimidine tract-b 97.7 0.00012 2.6E-09 72.9 8.8 78 5-95 297-375 (492)
100 PF11608 Limkain-b1: Limkain b 97.7 0.00012 2.7E-09 57.9 7.1 70 6-92 3-76 (90)
101 KOG0147 Transcriptional coacti 97.7 2.5E-05 5.3E-10 80.3 2.7 82 5-95 179-260 (549)
102 KOG4210 Nuclear localization s 97.6 4E-05 8.7E-10 74.7 4.0 84 4-96 183-267 (285)
103 COG5175 MOT2 Transcriptional r 97.5 0.00016 3.5E-09 70.4 6.1 80 4-93 113-203 (480)
104 PF00641 zf-RanBP: Zn-finger i 97.5 3.7E-05 8E-10 49.2 0.9 30 145-176 1-30 (30)
105 KOG0106 Alternative splicing f 97.5 8.4E-05 1.8E-09 69.2 3.2 70 3-88 97-166 (216)
106 KOG2314 Translation initiation 97.2 0.001 2.2E-08 68.9 8.3 77 5-90 58-141 (698)
107 KOG4307 RNA binding protein RB 97.1 0.0013 2.9E-08 69.4 7.9 76 6-89 868-943 (944)
108 smart00547 ZnF_RBZ Zinc finger 97.1 0.00029 6.3E-09 43.4 1.6 25 147-173 1-25 (26)
109 KOG1190 Polypyrimidine tract-b 97.0 0.00091 2E-08 66.8 5.6 78 3-92 412-490 (492)
110 PF08777 RRM_3: RNA binding mo 97.0 0.0011 2.4E-08 55.1 5.2 70 6-89 2-76 (105)
111 KOG0129 Predicted RNA-binding 96.9 0.0022 4.8E-08 65.8 6.7 62 4-73 369-431 (520)
112 KOG1365 RNA-binding protein Fu 96.8 0.0018 4E-08 64.2 5.5 85 5-95 280-364 (508)
113 PF08952 DUF1866: Domain of un 96.8 0.0075 1.6E-07 52.9 8.3 75 2-93 24-107 (146)
114 KOG0129 Predicted RNA-binding 96.7 0.0038 8.1E-08 64.2 7.2 62 5-75 259-326 (520)
115 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.004 8.6E-08 45.3 5.1 53 5-72 1-53 (53)
116 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0091 2E-07 49.2 7.8 80 4-92 5-91 (100)
117 KOG0105 Alternative splicing f 96.5 0.019 4E-07 52.1 9.4 62 5-81 115-176 (241)
118 KOG1456 Heterogeneous nuclear 96.5 0.0077 1.7E-07 59.7 7.2 79 3-94 118-200 (494)
119 KOG3152 TBP-binding protein, a 96.5 0.0027 5.9E-08 60.0 3.9 72 5-84 74-157 (278)
120 KOG1855 Predicted RNA-binding 96.5 0.003 6.4E-08 63.6 4.2 68 3-78 229-309 (484)
121 KOG1548 Transcription elongati 96.4 0.011 2.5E-07 58.1 7.7 79 4-94 264-353 (382)
122 KOG0120 Splicing factor U2AF, 96.3 0.0095 2.1E-07 61.9 7.2 64 20-91 424-490 (500)
123 KOG0112 Large RNA-binding prot 96.2 0.0056 1.2E-07 66.6 4.8 80 2-95 452-533 (975)
124 KOG1456 Heterogeneous nuclear 96.1 0.027 5.9E-07 56.0 8.7 78 4-94 286-364 (494)
125 PF10309 DUF2414: Protein of u 96.0 0.037 8E-07 41.6 7.1 60 3-75 3-62 (62)
126 KOG2193 IGF-II mRNA-binding pr 96.0 0.0083 1.8E-07 60.4 4.6 75 6-94 2-77 (584)
127 KOG0128 RNA-binding protein SA 95.8 0.0036 7.7E-08 67.7 1.2 82 5-95 736-817 (881)
128 KOG2416 Acinus (induces apopto 95.8 0.011 2.3E-07 61.9 4.5 78 4-95 443-524 (718)
129 KOG1365 RNA-binding protein Fu 95.4 0.044 9.6E-07 54.7 7.1 79 7-91 163-241 (508)
130 KOG2202 U2 snRNP splicing fact 95.3 0.013 2.8E-07 55.6 2.9 64 20-92 83-147 (260)
131 KOG0128 RNA-binding protein SA 95.3 0.0014 3.1E-08 70.6 -3.9 68 6-81 668-735 (881)
132 PF12871 PRP38_assoc: Pre-mRNA 95.1 0.015 3.3E-07 47.6 2.6 8 379-386 88-95 (97)
133 KOG1996 mRNA splicing factor [ 94.7 0.096 2.1E-06 50.7 6.9 64 20-91 301-365 (378)
134 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.056 1.2E-06 49.1 5.1 84 4-92 6-97 (176)
135 PF11767 SET_assoc: Histone ly 93.9 0.29 6.2E-06 37.3 6.8 56 15-87 10-65 (66)
136 PF12871 PRP38_assoc: Pre-mRNA 93.8 0.051 1.1E-06 44.5 2.8 6 376-381 89-94 (97)
137 KOG2068 MOT2 transcription fac 93.7 0.021 4.6E-07 56.0 0.4 83 5-95 77-165 (327)
138 KOG0115 RNA-binding protein p5 93.5 0.091 2E-06 49.9 4.2 62 6-76 32-93 (275)
139 KOG4660 Protein Mei2, essentia 93.5 0.097 2.1E-06 54.5 4.7 53 43-95 419-475 (549)
140 PF07576 BRAP2: BRCA1-associat 93.4 0.5 1.1E-05 39.7 8.0 68 6-82 13-81 (110)
141 PF08675 RNA_bind: RNA binding 93.2 0.26 5.7E-06 39.2 5.7 54 7-77 11-64 (87)
142 KOG4307 RNA binding protein RB 92.9 0.071 1.5E-06 56.9 2.8 78 5-90 434-511 (944)
143 KOG0112 Large RNA-binding prot 92.6 0.031 6.7E-07 61.0 -0.3 79 4-91 371-449 (975)
144 KOG0151 Predicted splicing reg 92.2 0.081 1.8E-06 56.6 2.1 12 80-91 633-644 (877)
145 PF03880 DbpA: DbpA RNA bindin 92.2 0.82 1.8E-05 35.2 7.3 72 7-90 2-74 (74)
146 KOG2253 U1 snRNP complex, subu 91.4 0.12 2.6E-06 54.9 2.4 71 3-90 38-108 (668)
147 KOG4574 RNA-binding protein (c 91.2 0.17 3.7E-06 55.1 3.3 77 7-97 300-378 (1007)
148 PF15023 DUF4523: Protein of u 91.1 0.78 1.7E-05 40.2 6.6 73 2-90 83-159 (166)
149 KOG2135 Proteins containing th 90.5 0.17 3.6E-06 51.9 2.3 78 2-94 369-447 (526)
150 KOG0804 Cytoplasmic Zn-finger 90.2 0.82 1.8E-05 46.8 6.9 70 4-82 73-142 (493)
151 PF04847 Calcipressin: Calcipr 89.2 1.1 2.4E-05 41.0 6.5 63 18-94 8-72 (184)
152 KOG3973 Uncharacterized conser 89.2 3.6 7.7E-05 41.0 10.2 12 137-148 378-389 (465)
153 KOG4210 Nuclear localization s 86.8 0.36 7.7E-06 47.2 1.8 82 5-94 88-169 (285)
154 KOG4285 Mitotic phosphoprotein 86.7 2.2 4.8E-05 41.7 7.0 73 5-93 197-270 (350)
155 KOG4676 Splicing factor, argin 86.0 0.27 5.9E-06 49.4 0.5 71 5-86 52-123 (479)
156 KOG2591 c-Mpl binding protein, 85.5 1.2 2.5E-05 46.9 4.7 56 6-76 176-233 (684)
157 PRK11634 ATP-dependent RNA hel 85.3 10 0.00022 41.3 12.1 73 8-92 489-562 (629)
158 KOG0796 Spliceosome subunit [R 83.9 0.63 1.4E-05 45.8 1.9 14 226-239 183-196 (319)
159 PRK14559 putative protein seri 83.0 1.1 2.5E-05 48.5 3.6 50 150-240 3-52 (645)
160 PF12773 DZR: Double zinc ribb 82.4 1.7 3.6E-05 30.6 3.2 48 155-236 3-50 (50)
161 PF13248 zf-ribbon_3: zinc-rib 81.8 0.89 1.9E-05 27.9 1.4 23 216-238 3-25 (26)
162 cd00350 rubredoxin_like Rubred 81.2 0.94 2E-05 29.4 1.4 25 216-240 2-28 (33)
163 KOG4246 Predicted DNA-binding 81.1 0.93 2E-05 49.6 2.1 7 57-63 61-67 (1194)
164 PF13240 zinc_ribbon_2: zinc-r 80.9 0.93 2E-05 27.1 1.2 22 217-238 1-22 (23)
165 cd00729 rubredoxin_SM Rubredox 80.0 1.1 2.4E-05 29.4 1.4 26 215-240 2-29 (34)
166 PRK14714 DNA polymerase II lar 76.7 2.2 4.8E-05 49.1 3.4 54 147-242 666-722 (1337)
167 KOG0796 Spliceosome subunit [R 73.1 1.5 3.3E-05 43.1 1.0 8 165-172 187-194 (319)
168 COG3478 Predicted nucleic-acid 73.0 1.6 3.5E-05 32.9 0.8 14 214-227 3-16 (68)
169 KOG0113 U1 small nuclear ribon 68.3 4 8.7E-05 39.9 2.6 7 22-28 9-15 (335)
170 KOG4477 RING1 interactor RYBP 67.6 2.1 4.6E-05 38.8 0.5 32 211-242 20-51 (228)
171 KOG2318 Uncharacterized conser 66.5 25 0.00053 37.5 8.0 78 4-89 173-302 (650)
172 KOG4483 Uncharacterized conser 66.5 11 0.00024 38.3 5.3 55 6-74 392-446 (528)
173 KOG2193 IGF-II mRNA-binding pr 64.4 0.42 9E-06 48.5 -5.0 78 5-93 80-157 (584)
174 COG0484 DnaJ DnaJ-class molecu 63.8 7.4 0.00016 39.4 3.6 21 10-30 9-29 (371)
175 KOG4849 mRNA cleavage factor I 62.1 1 2.3E-05 44.7 -2.7 15 60-74 89-103 (498)
176 PF03468 XS: XS domain; Inter 61.1 10 0.00022 32.0 3.5 56 7-73 10-75 (116)
177 PRK00415 rps27e 30S ribosomal 59.9 5.9 0.00013 29.5 1.6 26 215-240 11-41 (59)
178 COG4260 Membrane protease subu 57.3 14 0.0003 36.1 4.0 38 56-93 214-252 (345)
179 COG1592 Rubrerythrin [Energy p 57.2 5.6 0.00012 35.8 1.3 26 215-240 134-160 (166)
180 KOG4019 Calcineurin-mediated s 56.8 11 0.00023 34.5 3.0 76 5-94 10-91 (193)
181 KOG1902 Putative signal transd 56.4 5.5 0.00012 39.6 1.2 15 18-32 100-114 (441)
182 KOG4410 5-formyltetrahydrofola 53.6 22 0.00049 34.7 4.8 48 5-65 330-377 (396)
183 PF12172 DUF35_N: Rubredoxin-l 49.6 7.6 0.00017 25.6 0.7 22 217-238 13-34 (37)
184 PHA00626 hypothetical protein 47.6 11 0.00024 27.7 1.3 12 217-228 2-13 (59)
185 cd00730 rubredoxin Rubredoxin; 46.0 13 0.00028 26.7 1.4 11 213-223 32-42 (50)
186 PRK11788 tetratricopeptide rep 45.5 11 0.00024 37.2 1.5 27 212-238 351-377 (389)
187 COG0724 RNA-binding proteins ( 44.8 23 0.00051 32.0 3.4 63 3-73 223-285 (306)
188 COG1545 Predicted nucleic-acid 42.9 13 0.00029 32.3 1.4 22 217-238 31-52 (140)
189 KOG0835 Cyclin L [General func 41.5 33 0.00072 34.2 4.0 13 59-71 60-72 (367)
190 KOG0712 Molecular chaperone (D 40.3 70 0.0015 32.1 6.1 25 5-29 3-28 (337)
191 KOG2891 Surface glycoprotein [ 39.3 25 0.00055 34.2 2.7 49 5-56 149-209 (445)
192 PF00301 Rubredoxin: Rubredoxi 38.1 17 0.00036 25.8 1.0 12 213-224 32-43 (47)
193 KOG1295 Nonsense-mediated deca 37.9 33 0.00072 34.7 3.4 68 5-81 7-78 (376)
194 COG1066 Sms Predicted ATP-depe 37.5 17 0.00037 37.5 1.4 24 214-237 6-29 (456)
195 KOG4008 rRNA processing protei 35.2 36 0.00078 32.4 3.0 33 2-34 37-69 (261)
196 smart00596 PRE_C2HC PRE_C2HC d 34.6 56 0.0012 25.1 3.4 63 20-92 2-64 (69)
197 PF07530 PRE_C2HC: Associated 34.3 65 0.0014 24.5 3.8 64 20-93 2-65 (68)
198 KOG4477 RING1 interactor RYBP 33.6 20 0.00044 32.7 1.0 33 144-178 20-52 (228)
199 PRK04023 DNA polymerase II lar 32.4 48 0.001 37.9 3.8 54 144-241 622-675 (1121)
200 PRK11901 hypothetical protein; 31.5 1.1E+02 0.0024 30.5 5.8 54 15-78 252-307 (327)
201 PF09855 DUF2082: Nucleic-acid 31.4 24 0.00052 26.7 1.0 11 216-226 1-11 (64)
202 PF10571 UPF0547: Uncharacteri 30.4 34 0.00073 21.1 1.3 21 217-237 2-22 (26)
203 PF09862 DUF2089: Protein of u 30.0 28 0.00061 29.4 1.3 24 218-241 1-24 (113)
204 PF02714 DUF221: Domain of unk 29.1 56 0.0012 31.9 3.4 36 58-95 1-36 (325)
205 PF15513 DUF4651: Domain of un 28.8 1.1E+02 0.0023 23.1 4.0 15 20-34 9-23 (62)
206 PRK13130 H/ACA RNA-protein com 28.6 36 0.00077 25.1 1.4 23 217-241 7-29 (56)
207 PRK04136 rpl40e 50S ribosomal 27.6 35 0.00076 24.3 1.2 24 214-237 13-36 (48)
208 PRK00432 30S ribosomal protein 27.5 35 0.00075 24.4 1.2 21 217-237 22-45 (50)
209 cd01121 Sms Sms (bacterial rad 27.1 35 0.00075 34.7 1.6 23 216-238 1-23 (372)
210 PRK11823 DNA repair protein Ra 27.1 32 0.0007 35.8 1.4 24 215-238 7-30 (446)
211 PF12760 Zn_Tnp_IS1595: Transp 26.6 56 0.0012 22.6 2.1 25 211-236 15-44 (46)
212 PF03833 PolC_DP2: DNA polymer 26.5 22 0.00047 39.7 0.0 51 145-239 652-702 (900)
213 PF10005 DUF2248: Uncharacteri 26.3 39 0.00084 33.9 1.7 26 217-242 1-26 (343)
214 COG4640 Predicted membrane pro 26.2 33 0.00072 35.0 1.2 26 217-242 3-28 (465)
215 PRK00398 rpoP DNA-directed RNA 26.1 36 0.00078 23.5 1.1 25 216-240 4-32 (46)
216 COG2051 RPS27A Ribosomal prote 24.5 38 0.00082 25.8 0.9 25 215-239 19-48 (67)
217 COG4907 Predicted membrane pro 23.1 1.3E+02 0.0029 31.5 4.8 16 20-35 489-504 (595)
218 cd04718 BAH_plant_2 BAH, or Br 23.1 38 0.00083 29.9 0.9 16 212-227 15-30 (148)
219 TIGR00416 sms DNA repair prote 22.9 42 0.0009 35.1 1.3 24 215-238 7-30 (454)
220 KOG4454 RNA binding protein (R 22.7 20 0.00044 33.8 -0.9 63 7-78 82-148 (267)
221 PRK14559 putative protein seri 22.6 47 0.001 36.4 1.6 24 217-240 3-26 (645)
222 PLN00209 ribosomal protein S27 22.2 42 0.00092 26.8 0.9 27 215-241 36-67 (86)
223 PTZ00146 fibrillarin; Provisio 22.0 1.5E+02 0.0032 29.3 4.8 7 167-173 78-84 (293)
224 PF07292 NID: Nmi/IFP 35 domai 21.9 39 0.00084 27.2 0.6 25 3-27 50-74 (88)
225 PF14446 Prok-RING_1: Prokaryo 21.5 50 0.0011 24.1 1.1 22 217-238 7-30 (54)
226 KOG0132 RNA polymerase II C-te 20.9 1E+02 0.0022 34.2 3.7 11 66-76 105-115 (894)
227 smart00661 RPOL9 RNA polymeras 20.5 56 0.0012 22.7 1.2 10 215-224 20-29 (52)
228 KOG4365 Uncharacterized conser 20.3 18 0.00038 37.4 -2.0 80 5-93 3-82 (572)
229 TIGR03636 L23_arch archaeal ri 20.3 2.9E+02 0.0063 21.5 5.2 58 7-73 15-72 (77)
230 PF12523 DUF3725: Protein of u 20.2 42 0.0009 25.6 0.5 17 211-227 55-71 (74)
No 1
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=230.15 Aligned_cols=194 Identities=40% Similarity=0.673 Sum_probs=143.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+.+.+|||.+||..+++++|.++|.+++.|+..+.|++|+|+|+++++|+.+|+-|.|+|++...|++||.+++++.|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcccccc
Q 016532 83 NLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRDVNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFA 162 (388)
Q Consensus 83 r~I~V~~a~~~~~~~~~~~~~~~~g~~~~~gg~GG~~g~~g~~~~~ggrG~G~g~g~g~~~~r~gDW~C~~~~cg~~Nfa 162 (388)
.+|+|.+|..+.... |+
T Consensus 144 n~ikvs~a~~r~~ve---------------------------------------------------------------~~ 160 (351)
T KOG1995|consen 144 NTIKVSLAERRTGVE---------------------------------------------------------------SV 160 (351)
T ss_pred CCchhhhhhhccCcc---------------------------------------------------------------cc
Confidence 999999998765433 33
Q ss_pred cccccccCCCCCCCC---CCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCC-CCCccccccccccccCC
Q 016532 163 FRGVCNRCGTARPVG---GPGAGGR-AGGRG-RGRAGNESGSQGRQIGAATGLFGPNDWSCP-MCGNINWAKRTKCNICN 236 (388)
Q Consensus 163 ~R~~C~rC~~~r~~~---~~~~~~g-~g~~~-~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~-~c~~~n~~~~~~c~~c~ 236 (388)
.+..|+.|.++.+.. ..+...+ ++..+ .+++.-+...-....++..+++.++||.|+ .|.|+||||+..||+|+
T Consensus 161 rg~~~~~~g~g~fg~~~~grg~~~G~gg~~~~~~~~~rGg~~~~g~~g~~~~~~~d~Dw~c~~~c~N~nfa~r~~cnrck 240 (351)
T KOG1995|consen 161 RGGYPNDGGAGEFGRLRGGRGGPGGPGGGDGEAGKGDRGGVPDGGESGGGNVQDEDGDWDCPPSCGNRNFAWREECNRCK 240 (351)
T ss_pred cccccCcCCCCCccccccCCCCCCCCCCccccccccccCCcCCCcccCCccccccccccccccccccccccccccccccc
Confidence 333333333322210 0000000 00000 000000000011245677889999999999 99999999999999999
Q ss_pred CCCCCC---CCCCCccccCCCCCCcc
Q 016532 237 TNKPGH---NEGGVRGGRGGGYKELD 259 (388)
Q Consensus 237 ~~~~~~---~~~~~~~g~ggg~~~~~ 259 (388)
++||.. ..+..+...++++.+.+
T Consensus 241 ~~Kp~~~~~~gg~~~g~~~~g~~~~d 266 (351)
T KOG1995|consen 241 APKPERSLPSGGGPGGSRGEGGPGGD 266 (351)
T ss_pred CCCcccccCCCCCCCCCccCCCCccc
Confidence 999976 44555666666666655
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=7.3e-18 Score=147.97 Aligned_cols=84 Identities=26% Similarity=0.378 Sum_probs=79.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+++|||+|||+.+|+++|+++|.+||.|.. |.|+.++.|+++++||||+|.+.++|++||+.|++..|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVD--------AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4679999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016532 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|+|.++..+..
T Consensus 105 ~l~V~~a~~~~~ 116 (144)
T PLN03134 105 HIRVNPANDRPS 116 (144)
T ss_pred EEEEEeCCcCCC
Confidence 999999987654
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=5e-17 Score=153.54 Aligned_cols=86 Identities=28% Similarity=0.325 Sum_probs=81.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
.||||+-|+++|+|..|+.+|+.||.|+. |.|+.++.||+|+|||||+|+.+.++..|++..+|..|+++.|
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~Ikr--------irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKR--------IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCccee--------EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 59999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCCcc
Q 016532 86 GVFIAESRGKDDHA 99 (388)
Q Consensus 86 ~V~~a~~~~~~~~~ 99 (388)
.|.+...+....+.
T Consensus 174 ~VDvERgRTvkgW~ 187 (335)
T KOG0113|consen 174 LVDVERGRTVKGWL 187 (335)
T ss_pred EEEecccccccccc
Confidence 99998877665543
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=5.9e-15 Score=146.94 Aligned_cols=84 Identities=32% Similarity=0.447 Sum_probs=77.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG- 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G- 82 (388)
..++|||+|||..+|+++|+++|++||.|.. |.|+.++.|+++++||||+|.+.++|++||+.||+..|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQ--------KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4678999999999999999999999999988 7799999999999999999999999999999999998876
Q ss_pred -ceEEEEecccCCC
Q 016532 83 -NLIGVFIAESRGK 95 (388)
Q Consensus 83 -r~I~V~~a~~~~~ 95 (388)
+.|.|.++....+
T Consensus 264 ~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 264 SQPLTVRLAEEHGK 277 (346)
T ss_pred ceeEEEEECCcccc
Confidence 6899999887544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.59 E-value=7.5e-15 Score=145.68 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=78.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
.+|||+|||+.+++++|.++|++||.|.. |+|+.++.|+.++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~--------v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQN--------VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 36999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016532 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
+|.++.++..
T Consensus 342 ~V~~~~~~~~ 351 (352)
T TIGR01661 342 QVSFKTNKAY 351 (352)
T ss_pred EEEEccCCCC
Confidence 9999988754
No 6
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.5e-15 Score=141.94 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=83.0
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|++|.+.|||+.|++.||.++|+.+|+.||.|.+ +.|++|..||.+..||||+|++.+++++|+..|+++.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~s--------ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVS--------CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhccccee--------eeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 5788999999999999999999999999999999 55999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 016532 81 HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~ 95 (388)
+.+.|+|.++++..+
T Consensus 307 DDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 307 DDRRIHVDFSQSVSK 321 (479)
T ss_pred ccceEEeehhhhhhh
Confidence 999999999988765
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.55 E-value=1.8e-14 Score=142.95 Aligned_cols=83 Identities=27% Similarity=0.346 Sum_probs=78.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+.++|||+|||..+|+++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIES--------CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEE--------EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 4689999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016532 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.++.+..
T Consensus 74 ~i~v~~a~~~~ 84 (352)
T TIGR01661 74 TIKVSYARPSS 84 (352)
T ss_pred eEEEEeecccc
Confidence 99999987654
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=1.9e-14 Score=143.38 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=77.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
..++|||++||+++|+++|+++|++||.|+. |+|+.++.|+++++||||+|.++++|++||+.|++..|.++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~--------v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINT--------CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 4679999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.++.+.
T Consensus 178 ~i~V~~a~p~ 187 (346)
T TIGR01659 178 RLKVSYARPG 187 (346)
T ss_pred eeeeeccccc
Confidence 9999998753
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.4e-14 Score=127.91 Aligned_cols=79 Identities=35% Similarity=0.549 Sum_probs=73.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
-+++|||+||+..+++.||+.+|..||.|.. |||-.++ .|||||+|+++.+|+.|+..|+|..|.|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--------vWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS--------VWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCccee--------EEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCc
Confidence 3689999999999999999999999999998 9988754 69999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016532 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|++++-...
T Consensus 76 r~rVE~S~G~~r 87 (195)
T KOG0107|consen 76 RIRVELSTGRPR 87 (195)
T ss_pred eEEEEeecCCcc
Confidence 999999977544
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=3.7e-14 Score=107.16 Aligned_cols=70 Identities=31% Similarity=0.528 Sum_probs=65.9
Q ss_pred EEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 8 lfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
|||+|||+++|+++|.++|++||.|.. |.|+.+ .++.+++||||+|.+.++|++||+.|++..|.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIES--------IKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEE--------EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccc--------cccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999987 778887 5789999999999999999999999999999999875
No 11
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.3e-14 Score=132.46 Aligned_cols=82 Identities=32% Similarity=0.397 Sum_probs=79.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++.+|-|.|||.+++|++|+++|..||.|.. |.|.+|+.||.++|||||+|.+.++|++||..|||.-++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r--------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITR--------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccce--------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 5789999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|++++|+
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999999886
No 12
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.7e-13 Score=123.96 Aligned_cols=83 Identities=27% Similarity=0.295 Sum_probs=78.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
-++|.|-||.+.||.++|..+|++||.|.. |.|++|+.|..++|||||-|....+|+.||+.|+|.+|+|+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgD--------VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGD--------VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccc--------eecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 368999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|++|+--..
T Consensus 85 lrVq~arygr~ 95 (256)
T KOG4207|consen 85 LRVQMARYGRP 95 (256)
T ss_pred eeehhhhcCCC
Confidence 99999986443
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=8e-13 Score=100.77 Aligned_cols=70 Identities=33% Similarity=0.558 Sum_probs=64.0
Q ss_pred EEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 8 lfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
|||+|||+.+++++|.++|+.||.|.. |.++.++. +.++++|||+|.++++|+.|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~--------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEK--------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEE--------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcce--------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999877 88999887 89999999999999999999999999999998874
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.8e-13 Score=113.29 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=76.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
..+.||||+||+..|+|++|.++|+++|.|.. |.+-.|+.|..+-||+||+|.+.++|+.||..+++..|+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irr--------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRR--------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchhe--------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 35789999999999999999999999999997 7777899999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 016532 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
++|.|.+.-.
T Consensus 106 r~ir~D~D~G 115 (153)
T KOG0121|consen 106 RPIRIDWDAG 115 (153)
T ss_pred cceeeecccc
Confidence 9999998644
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.5e-13 Score=124.20 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=72.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
++|||++|++.|+.+.|+.+|++||.|.+ ..||.|+.|+++|||+||+|.+.++|++|++-. .-.|+|++.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~e--------avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~a 83 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVE--------AVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKA 83 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEE--------EEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCccccccc
Confidence 68999999999999999999999999998 559999999999999999999999999999844 456999999
Q ss_pred EEEeccc
Q 016532 86 GVFIAES 92 (388)
Q Consensus 86 ~V~~a~~ 92 (388)
.+.+|..
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 9999875
No 16
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=3.6e-14 Score=125.94 Aligned_cols=81 Identities=28% Similarity=0.356 Sum_probs=76.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.-|||+|||+..||.||..+|++||.|+. |.|++|+.||+|+||||+.|++..+..-||..|||..|.|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vd--------inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVD--------INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEE--------EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 35778999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016532 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|.|....
T Consensus 105 RtirVDHv~ 113 (219)
T KOG0126|consen 105 RTIRVDHVS 113 (219)
T ss_pred eeEEeeecc
Confidence 999998754
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.6e-12 Score=115.87 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+.+|||+|||.++.+.+|+++|.+||.|.. |.|..- -.+..||||+|+++.+|+.||..-+|..+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~--------ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~ 73 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIRE--------IELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC 73 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEE--------EEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcc
Confidence 4569999999999999999999999999987 444322 23568999999999999999999999999999
Q ss_pred eEEEEeccc
Q 016532 84 LIGVFIAES 92 (388)
Q Consensus 84 ~I~V~~a~~ 92 (388)
.|.|+++..
T Consensus 74 rLRVEfprg 82 (241)
T KOG0105|consen 74 RLRVEFPRG 82 (241)
T ss_pred eEEEEeccC
Confidence 999999865
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.38 E-value=2.1e-12 Score=134.51 Aligned_cols=82 Identities=32% Similarity=0.360 Sum_probs=77.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||..+|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|+.||..|++..|.++.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKA--------FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 468999999999999999999999999988 779999999999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 016532 85 IGVFIAESRG 94 (388)
Q Consensus 85 I~V~~a~~~~ 94 (388)
|.|.+|....
T Consensus 367 l~v~~a~~~~ 376 (509)
T TIGR01642 367 LHVQRACVGA 376 (509)
T ss_pred EEEEECccCC
Confidence 9999997543
No 19
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=111.46 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=78.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
.-.|||.++.+.+||++|...|..||.|+. |.|-.|+.||..+|||+|+|++.++|++||..||+..|+++.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKN--------ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKN--------IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccc--------eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 457999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|.++..+.+
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999987654
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.8e-12 Score=121.50 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=71.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+|||+.+|+++|+++|+.||.|.. |.|+.++. +++||||+|.++++|+.||. |++..|.++
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~--------V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEY--------VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 4679999999999999999999999999998 88888864 46899999999999999995 999999999
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.++..-
T Consensus 71 ~V~Vt~a~~~ 80 (260)
T PLN03120 71 SVTITPAEDY 80 (260)
T ss_pred eEEEEeccCC
Confidence 9999998643
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.37 E-value=2.2e-12 Score=132.67 Aligned_cols=80 Identities=30% Similarity=0.347 Sum_probs=76.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
+.+|||+|||..+|+++|.++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++..|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIED--------VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEE
Confidence 579999999999999999999999999988 889999999999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 016532 85 IGVFIAES 92 (388)
Q Consensus 85 I~V~~a~~ 92 (388)
|.|.++..
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999874
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=1.7e-12 Score=129.85 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceec
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP--HAALAAVEWFNNKDFH 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~--e~A~~Ai~~lng~~i~ 81 (388)
...+|||+||++.||+++|..+|+.||.|.. |.|+ +.|| +|||||+|... .++.+||..|||..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkd--------VEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDA--------VEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 3468999999999999999999999999998 7788 5567 89999999987 7899999999999999
Q ss_pred CceEEEEecccC
Q 016532 82 GNLIGVFIAESR 93 (388)
Q Consensus 82 Gr~I~V~~a~~~ 93 (388)
|+.|+|..|++.
T Consensus 77 GR~LKVNKAKP~ 88 (759)
T PLN03213 77 GGRLRLEKAKEH 88 (759)
T ss_pred CceeEEeeccHH
Confidence 999999999864
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.37 E-value=2.5e-12 Score=135.42 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=78.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||+++++++|+++|+.||.|.. |.|+.++.|+.++|||||+|.+.++|.+||+.||+..|.|+.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~s--------vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVK--------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 468999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|.++.+++.
T Consensus 276 LrV~kAi~pP~ 286 (612)
T TIGR01645 276 LRVGKCVTPPD 286 (612)
T ss_pred EEEEecCCCcc
Confidence 99999987554
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=8.6e-12 Score=131.10 Aligned_cols=77 Identities=29% Similarity=0.402 Sum_probs=69.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhc--CceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTI--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~--G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
...+|||+|||..+|+++|+++|++| |.|.. |.++ ++||||+|.+.++|++||+.||+.+|.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r--------V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER--------VKKI--------RDYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE--------EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 35789999999999999999999999 99987 5444 469999999999999999999999999
Q ss_pred CceEEEEecccCCCC
Q 016532 82 GNLIGVFIAESRGKD 96 (388)
Q Consensus 82 Gr~I~V~~a~~~~~~ 96 (388)
|+.|+|.+|++....
T Consensus 296 Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 296 GSEIEVTLAKPVDKK 310 (578)
T ss_pred CEEEEEEEccCCCcc
Confidence 999999999886543
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.35 E-value=2.9e-12 Score=134.96 Aligned_cols=80 Identities=31% Similarity=0.341 Sum_probs=75.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+|||+.+++++|+++|.+||.|.. |.|+.++.|++++|||||+|.+.++|+.||+.||+..|.|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~s--------V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 177 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEE--------EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence 3468999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecc
Q 016532 84 LIGVFIAE 91 (388)
Q Consensus 84 ~I~V~~a~ 91 (388)
.|.|....
T Consensus 178 ~IkV~rp~ 185 (612)
T TIGR01645 178 NIKVGRPS 185 (612)
T ss_pred eeeecccc
Confidence 99998644
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=6.1e-12 Score=93.77 Aligned_cols=72 Identities=31% Similarity=0.436 Sum_probs=65.9
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
+|||.|||..+++++|..+|.+||.|.. |.++.++ +.++++|||+|.+.++|+.|+..|++..|.++.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES--------VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 5999999999999999999999999987 6677766 67889999999999999999999999999999888
Q ss_pred EE
Q 016532 87 VF 88 (388)
Q Consensus 87 V~ 88 (388)
|+
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 73
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.8e-13 Score=120.98 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=82.1
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|.....+|||++|...|||..|...|-.||.|+. |.|+.|..+.+.++|+||+|...++|.+||..||..+|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~d--------IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL 77 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKD--------IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL 77 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhh--------cccccchhcccccceeEEEeeccchhHHHhhcCchhhh
Confidence 4567789999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 016532 81 HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~ 95 (388)
.|+.|.|.+|+|..-
T Consensus 78 ~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 78 FGRTIRVNLAKPEKI 92 (298)
T ss_pred cceeEEEeecCCccc
Confidence 999999999998644
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.7e-12 Score=119.73 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=78.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
.+.|+|.-||.++|+++|+.+|...|+|.+ +++++||.||.+.||+||.|..+++|++||..|||..|..+.
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiES--------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceee--------eeeeeccccccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 357899999999999999999999999999 669999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|+|+||++...
T Consensus 113 IKVSyARPSs~ 123 (360)
T KOG0145|consen 113 IKVSYARPSSD 123 (360)
T ss_pred EEEEeccCChh
Confidence 99999998654
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=4.5e-12 Score=134.01 Aligned_cols=79 Identities=28% Similarity=0.389 Sum_probs=75.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
.+|||+|||+++||++|.++|++||.|.. |+|++++.|++++|||||+|.+.++|++||..|++..|.|+.|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~--------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLS--------VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 37999999999999999999999999988 8899999999999999999999999999999999999999999
Q ss_pred EEEeccc
Q 016532 86 GVFIAES 92 (388)
Q Consensus 86 ~V~~a~~ 92 (388)
.|.++..
T Consensus 73 ~i~~s~~ 79 (562)
T TIGR01628 73 RIMWSQR 79 (562)
T ss_pred Eeecccc
Confidence 9998764
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.33 E-value=4.9e-12 Score=130.12 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||..+++++|+++|++||.|.. |.|+.++.|++++|||||+|.+.++|++||. |++..|.|+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRD--------VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGR 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 4679999999999999999999999999988 8899999999999999999999999999997 999999999
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.++...
T Consensus 159 ~i~v~~~~~~ 168 (457)
T TIGR01622 159 PIIVQSSQAE 168 (457)
T ss_pred eeEEeecchh
Confidence 9999987643
No 31
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=7.7e-12 Score=116.10 Aligned_cols=80 Identities=35% Similarity=0.510 Sum_probs=76.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||..+|+++|..+|.+||.|.. |.|..++.|+.++|||||+|.+.++|..||..|++..|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~--------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKR--------VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeE--------EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999999999999999987 889999899999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 016532 85 IGVFIAES 92 (388)
Q Consensus 85 I~V~~a~~ 92 (388)
|.|.++..
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999764
No 32
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.7e-12 Score=121.43 Aligned_cols=83 Identities=24% Similarity=0.224 Sum_probs=75.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
..+.|+|+|||+.+.+.||+.+|.+||.|.. |.||.+. .-||||+||+|++.++|++|-++|||..|.|+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld--------VEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD--------VEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceee--------EEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 3578999999999999999999999999998 7788876 35899999999999999999999999999999
Q ss_pred eEEEEecccCCCC
Q 016532 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
+|.|..|..+...
T Consensus 165 kIEVn~ATarV~n 177 (376)
T KOG0125|consen 165 KIEVNNATARVHN 177 (376)
T ss_pred EEEEeccchhhcc
Confidence 9999999876443
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=115.59 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=72.7
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|.....+|||+||++.+|+++|+++|+.||.|.. |.|+.+.. ..+||||+|.++++|+.||. |+|..|
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~--------V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l 68 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEH--------VEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATI 68 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEE--------EEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCee
Confidence 6677889999999999999999999999999998 88998854 45799999999999999995 999999
Q ss_pred cCceEEEEeccc
Q 016532 81 HGNLIGVFIAES 92 (388)
Q Consensus 81 ~Gr~I~V~~a~~ 92 (388)
.++.|.|.....
T Consensus 69 ~d~~I~It~~~~ 80 (243)
T PLN03121 69 VDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEeCcc
Confidence 999999988654
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=91.52 Aligned_cols=71 Identities=38% Similarity=0.497 Sum_probs=66.0
Q ss_pred eccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEE
Q 016532 10 VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVF 88 (388)
Q Consensus 10 V~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~ 88 (388)
|.|||..+++++|..+|.+||.|.. |.|+.++.++.++++|||+|.+.++|..|+..|++..|.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIES--------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeE--------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999987 7788888889999999999999999999999999999999988873
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.30 E-value=1.1e-11 Score=131.12 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=77.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+||+..+|+++|+++|++||.|.. |+|+.+ .++.++|||||+|.+.++|++||..||+..|.|+
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~--------~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITS--------AKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEE--------EEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 4578999999999999999999999999998 779998 5799999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016532 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.+|..+.
T Consensus 355 ~l~V~~a~~k~ 365 (562)
T TIGR01628 355 PLYVALAQRKE 365 (562)
T ss_pred eeEEEeccCcH
Confidence 99999998754
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.6e-11 Score=113.83 Aligned_cols=80 Identities=30% Similarity=0.495 Sum_probs=74.1
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
++++++|||+||+..+||++|++.|+.||.|.+ |+|+.++ |||||.|++.|+|..||..+|+.+|.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E--------VRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE--------VRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceE--------EEEeccc------ceEEEEecchhhHHHHHHHhcCceeC
Confidence 467899999999999999999999999999998 8899876 89999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 016532 82 GNLIGVFIAESRGK 95 (388)
Q Consensus 82 Gr~I~V~~a~~~~~ 95 (388)
|+.|+..+-+....
T Consensus 227 G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 227 GQLVRCSWGKEGDD 240 (321)
T ss_pred ceEEEEeccccCCC
Confidence 99999999876543
No 37
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=99.28 E-value=4.2e-12 Score=121.18 Aligned_cols=100 Identities=26% Similarity=0.483 Sum_probs=67.9
Q ss_pred CccccCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC-------CCCCCCCC-----CCCCCCCCCCCC
Q 016532 141 KTWQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGR-------GRGRAGNE-----SGSQGRQIGAAT 208 (388)
Q Consensus 141 ~~~~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~-------~~g~~~~~-----~~~~~~~~~~~~ 208 (388)
....+++||.|+ .|+..||+.++.|++|+.+++...........+. ....+.+- +.+-.... ++.
T Consensus 57 ~~~~~pgdw~c~--~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~-~~~ 133 (280)
T KOG4198|consen 57 KDPPRPGDWNCP--LCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNN-KPK 133 (280)
T ss_pred CCCCCCcccccC--ccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccc-ccc
Confidence 345689999999 4999999999999999998876554321111110 00000000 00000000 133
Q ss_pred CCCCCCCccCCCCCccccccccccccCCCCCCCCC
Q 016532 209 GLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (388)
Q Consensus 209 ~~~~~~dw~c~~c~~~n~~~~~~c~~c~~~~~~~~ 243 (388)
..|.+|||.|+.|++||||++++|.+|+++++...
T Consensus 134 r~~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a 168 (280)
T KOG4198|consen 134 RPWRSGDWECPGCNFHNFARNSECFRCGAKRPLAA 168 (280)
T ss_pred CCccccCcccCCCCceeccccchhhhcCCcCcccc
Confidence 57999999999999999999999999999999743
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=1e-11 Score=130.58 Aligned_cols=77 Identities=31% Similarity=0.459 Sum_probs=70.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-Cc
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-GN 83 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~-Gr 83 (388)
.++|||+|||.+++|++|.++|++||.|.. |+|++| .+++++|||||+|.+.++|++||+.||+..|. ++
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~--------vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr 128 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYE--------LRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR 128 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEE--------EEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCc
Confidence 479999999999999999999999999998 889999 78999999999999999999999999999885 67
Q ss_pred eEEEEec
Q 016532 84 LIGVFIA 90 (388)
Q Consensus 84 ~I~V~~a 90 (388)
.|.|..+
T Consensus 129 ~l~V~~S 135 (578)
T TIGR01648 129 LLGVCIS 135 (578)
T ss_pred ccccccc
Confidence 7766654
No 39
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.26 E-value=3.9e-11 Score=116.73 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=90.3
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcc
Q 016532 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (388)
..++|+|++-+|.++||+++.+|..|++.+......+... ... --...++..+|...||.|.+|+++
T Consensus 68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dk----------eT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDK----------ETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccc----------cccCcCCceeeeecChhhhhhhhh
Confidence 5689999999999999999999999999998754333211 000 012445566777777777777777
Q ss_pred ccccccccc-----------------------cCCCCCCCC--CCCCCccccCCCCCC-----cchHHHHHHHHhhhhhh
Q 016532 225 NWAKRTKCN-----------------------ICNTNKPGH--NEGGVRGGRGGGYKE-----LDEEELEETKRRRREAE 274 (388)
Q Consensus 225 n~~~~~~c~-----------------------~c~~~~~~~--~~~~~~~g~ggg~~~-----~~~~~~~~~~~~~~~~~ 274 (388)
|||.+..|+ .|+++++.. ...+..+|.+|++++ ....+...----.-.++
T Consensus 135 ~~agkdf~gn~ikvs~a~~r~~ve~~rg~~~~~~g~g~fg~~~~grg~~~G~gg~~~~~~~~~rGg~~~~g~~g~~~~~~ 214 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAERRTGVESVRGGYPNDGGAGEFGRLRGGRGGPGGPGGGDGEAGKGDRGGVPDGGESGGGNVQD 214 (351)
T ss_pred hhccccccCCCchhhhhhhccCcccccccccCcCCCCCccccccCCCCCCCCCCccccccccccCCcCCCcccCCccccc
Confidence 777666666 333333320 111223344555552 11000000000001235
Q ss_pred hcCCcccc-ccCcccccccccchhhhhccC
Q 016532 275 ADDGELYD-EFGNLKKKFRAKTQQVEAAQV 303 (388)
Q Consensus 275 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 303 (388)
++.||.|. .|+|.+++.+..||+|.+++.
T Consensus 215 ~d~Dw~c~~~c~N~nfa~r~~cnrck~~Kp 244 (351)
T KOG1995|consen 215 EDGDWDCPPSCGNRNFAWREECNRCKAPKP 244 (351)
T ss_pred ccccccccccccccccccccccccccCCCc
Confidence 67789998 999999999999999887653
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=5e-11 Score=89.26 Aligned_cols=74 Identities=36% Similarity=0.511 Sum_probs=67.6
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
+|||.|||..+++++|.++|..||.|.. +.++.++.+ .++++|||+|.+.++|..|+..+++..+.++.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~--------~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVES--------VRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEE--------EEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 5899999999999999999999999987 778877765 6789999999999999999999999999999998
Q ss_pred EEe
Q 016532 87 VFI 89 (388)
Q Consensus 87 V~~ 89 (388)
|.+
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 864
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.24 E-value=2.3e-11 Score=117.46 Aligned_cols=93 Identities=33% Similarity=0.514 Sum_probs=87.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.++.|||+|||.++|.+++.++|++||.|..+..|+.|+|+|+++.. |..+|-|.|.|...++++-||..|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 46679999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred eEEEEecccCCCCC
Q 016532 84 LIGVFIAESRGKDD 97 (388)
Q Consensus 84 ~I~V~~a~~~~~~~ 97 (388)
.|+|+.|+...+..
T Consensus 212 ~~rVerAkfq~Kge 225 (382)
T KOG1548|consen 212 KLRVERAKFQMKGE 225 (382)
T ss_pred EEEEehhhhhhccC
Confidence 99999999876643
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=120.77 Aligned_cols=81 Identities=28% Similarity=0.439 Sum_probs=75.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-Cc
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-GN 83 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~-Gr 83 (388)
.+-|||+.||.++.|++|..+|++.|.|-. ++|+.|+.+|.++|||||+|.+.+.|+.||+.||+++|. |+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~e--------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYE--------LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceee--------EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 468999999999999999999999999988 999999999999999999999999999999999999986 88
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|..+...
T Consensus 155 ~igvc~Svan 164 (506)
T KOG0117|consen 155 LLGVCVSVAN 164 (506)
T ss_pred EeEEEEeeec
Confidence 8888887643
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=5.4e-11 Score=118.16 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=71.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.-..|||.||+.+|||+.|+++|++||.|.. |+.+ +-||||.|.+.++|.+||+.||+++|+|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR--------Vkk~--------rDYaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVER--------VKKP--------RDYAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEE--------eecc--------cceeEEeecchHHHHHHHHHhcCceecCc
Confidence 3468999999999999999999999999987 4444 34999999999999999999999999999
Q ss_pred eEEEEecccCCCCCcc
Q 016532 84 LIGVFIAESRGKDDHA 99 (388)
Q Consensus 84 ~I~V~~a~~~~~~~~~ 99 (388)
.|.|.+|++..+....
T Consensus 322 ~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 322 PIEVTLAKPVDKKKKE 337 (506)
T ss_pred eEEEEecCChhhhccc
Confidence 9999999997665443
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.20 E-value=3.8e-11 Score=122.09 Aligned_cols=82 Identities=28% Similarity=0.399 Sum_probs=78.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
..|||+|||+++++++|..+|+..|.|.+ ++++.|+.||+++||+|++|.+.++|+.||..||+.++.|++|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s--------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS--------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccce--------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 78999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016532 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
+|.++.....
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999876554
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.18 E-value=1.1e-10 Score=121.45 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=71.3
Q ss_pred CCcEEEeccCCC-CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 4 ANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~-~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
++.+|||+|||+ .+|+++|.++|+.||.|.. |+|+.++ ++||||+|.++++|+.||..||+..|.|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~--------vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER--------VKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 567999999998 6999999999999999998 7788764 5899999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016532 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.+++...
T Consensus 341 ~~l~v~~s~~~~ 352 (481)
T TIGR01649 341 KPLRVCPSKQQN 352 (481)
T ss_pred ceEEEEEccccc
Confidence 999999987653
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1e-10 Score=95.37 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=70.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
+..|||.|||..+|.+++.++|.+||.|.. |+|-..+. .+|-|||.|++..+|.+|+..|.|..+.++.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQ--------IRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQ--------IRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEE--------EEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 568999999999999999999999999998 77776665 5799999999999999999999999999999
Q ss_pred EEEEecccC
Q 016532 85 IGVFIAESR 93 (388)
Q Consensus 85 I~V~~a~~~ 93 (388)
|.|-+-++.
T Consensus 87 l~vlyyq~~ 95 (124)
T KOG0114|consen 87 LVVLYYQPE 95 (124)
T ss_pred EEEEecCHH
Confidence 999987653
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=4e-11 Score=106.79 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...||||+||+..++++.|.++|-+.|.|.. |+|++++.|...+|||||+|.++++|+-||+.||...|.|+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~--------i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVN--------LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceee--------eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEeccc
Q 016532 84 LIGVFIAES 92 (388)
Q Consensus 84 ~I~V~~a~~ 92 (388)
+|+|..+..
T Consensus 80 pIrv~kas~ 88 (203)
T KOG0131|consen 80 PIRVNKASA 88 (203)
T ss_pred eeEEEeccc
Confidence 999999883
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.1e-11 Score=110.52 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=77.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
..|||+-|.+.++-++|++.|.+||.|.. .+|++|..|+++|||+||.|...++|+.||..|||.=|..+.|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~--------akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSD--------AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred eeEEehhcchhcchHHHHHHhcccccccc--------ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 46999999999999999999999999998 5599999999999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 016532 86 GVFIAESRG 94 (388)
Q Consensus 86 ~V~~a~~~~ 94 (388)
+-.+|..++
T Consensus 135 RTNWATRKp 143 (321)
T KOG0148|consen 135 RTNWATRKP 143 (321)
T ss_pred eccccccCc
Confidence 999998776
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.8e-10 Score=119.87 Aligned_cols=77 Identities=26% Similarity=0.223 Sum_probs=68.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceec
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF--NNKDFH 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~l--ng~~i~ 81 (388)
++.+|||+|||+.+|+++|.++|++||.|.. |.|+.+ ++||||+|.+.++|+.||..| ++..|.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~--------v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSY--------VMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 5789999999999999999999999999998 667643 579999999999999999864 778999
Q ss_pred CceEEEEecccCC
Q 016532 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.++..+.
T Consensus 67 g~~l~v~~s~~~~ 79 (481)
T TIGR01649 67 GQPAFFNYSTSQE 79 (481)
T ss_pred CeEEEEEecCCcc
Confidence 9999999997653
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2e-10 Score=107.32 Aligned_cols=80 Identities=29% Similarity=0.386 Sum_probs=76.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
--|||-||.+++.|.-|.++|..||.|.. |+|++|..|.+.|||+||++.+.++|..||..|||..|.++.|
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~n--------VKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTN--------VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceee--------EEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 36999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEEecccC
Q 016532 86 GVFIAESR 93 (388)
Q Consensus 86 ~V~~a~~~ 93 (388)
.|.+...+
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99997664
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.6e-10 Score=115.69 Aligned_cols=82 Identities=33% Similarity=0.440 Sum_probs=75.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-c
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF-----NN-K 78 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~l-----ng-~ 78 (388)
..+|||.|||+++|+++|.++|++||.|.. +.|+.++.|+.++|.|||.|.++.+|+.||+.. .+ +
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~y--------a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ 363 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKY--------AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV 363 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhcccee--------EEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE
Confidence 379999999999999999999999999998 679999999999999999999999999999966 23 6
Q ss_pred eecCceEEEEecccCC
Q 016532 79 DFHGNLIGVFIAESRG 94 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~ 94 (388)
.|.|+.|.|.+|.++.
T Consensus 364 ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 364 LLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEeccEEeeeeccchH
Confidence 7889999999988754
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=7.4e-11 Score=110.55 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
++...|||-.||.++.+.||.++|-.||.|.+.+ |+.|+.|..+|+|+||.|+++.+|+.||..|||..|.-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK--------VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK--------VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeee--------eeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 3567999999999999999999999999999954 88999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016532 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
++|+|.+.+++...
T Consensus 355 KRLKVQLKRPkdan 368 (371)
T KOG0146|consen 355 KRLKVQLKRPKDAN 368 (371)
T ss_pred hhhhhhhcCccccC
Confidence 99999999887643
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.2e-10 Score=115.16 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=76.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-cC
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF-HG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i-~G 82 (388)
++.+|||+-|+..+||.+|+++|++||.|+. |.|+++.. +.++|+|||.|.+.+-|..||+.||+..- .|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied--------~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIED--------CYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccch--------hhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 4678999999999999999999999999998 77999986 89999999999999999999999999754 44
Q ss_pred --ceEEEEecccCCCCC
Q 016532 83 --NLIGVFIAESRGKDD 97 (388)
Q Consensus 83 --r~I~V~~a~~~~~~~ 97 (388)
.+|.|.||.++..+.
T Consensus 194 cs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKDKD 210 (510)
T ss_pred CCCceEEEecccCCCch
Confidence 899999999876554
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=6e-10 Score=85.62 Aligned_cols=61 Identities=23% Similarity=0.411 Sum_probs=54.9
Q ss_pred HHHHHHHHH----hcCceeecCCCCCCeEE-EEecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEE
Q 016532 19 EDMLAEYFG----TIGLLKKDKRTGRPKVW-LYRDKTT--NEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGV 87 (388)
Q Consensus 19 eedL~~~F~----~~G~i~~~~~tg~p~V~-i~~dk~T--g~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V 87 (388)
+++|.++|. +||.|.. |. |+.++.| +.++||+||+|.+.++|+.||..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~--------v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGK--------INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeE--------EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 9999987 64 6777777 899999999999999999999999999999999876
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=6.2e-10 Score=113.02 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=75.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
.-.|+|.|||+.+...+|+.+|+.||.|.. |.|++.+.+... |||||+|....+|..||+.||+..|.|++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~E--------i~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVE--------IVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEE--------EEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 457999999999999999999999999998 889988875554 99999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|-|.||.++..
T Consensus 188 VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 188 VAVDWAVDKDT 198 (678)
T ss_pred eEEeeeccccc
Confidence 99999987654
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=5.1e-10 Score=110.87 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=75.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ec-
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-FH- 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~-i~- 81 (388)
+.-+|||+-||..++|.||+.+|++||.|.+ |.|++||.|+.++|+|||.|.+.++|.+|+..|+... |-
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~e--------inl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYE--------INLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeE--------EEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 3458999999999999999999999999998 8899999999999999999999999999999998764 43
Q ss_pred -CceEEEEecccCCCC
Q 016532 82 -GNLIGVFIAESRGKD 96 (388)
Q Consensus 82 -Gr~I~V~~a~~~~~~ 96 (388)
...|.|.+|....+.
T Consensus 105 ~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 105 MHHPVQVKYADGERER 120 (510)
T ss_pred CCcceeecccchhhhc
Confidence 478999998865543
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.99 E-value=7.3e-10 Score=98.80 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=77.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
+..|||+||.+.++|..|...|+.||.+... -.|+++..|+.+++|+||.|.+.+.+.+||..||+..+.+++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~-------P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~ 168 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISP-------PKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRP 168 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccC-------CcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCc
Confidence 4689999999999999999999999999763 358899999999999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q 016532 85 IGVFIAESRGKD 96 (388)
Q Consensus 85 I~V~~a~~~~~~ 96 (388)
|.|.++..+...
T Consensus 169 itv~ya~k~~~k 180 (203)
T KOG0131|consen 169 ITVSYAFKKDTK 180 (203)
T ss_pred eEEEEEEecCCC
Confidence 999999887553
No 58
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=2.1e-09 Score=78.62 Aligned_cols=56 Identities=30% Similarity=0.495 Sum_probs=48.9
Q ss_pred HHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEec
Q 016532 22 LAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIA 90 (388)
Q Consensus 22 L~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a 90 (388)
|..+|++||.|.. |.+..++ .++|||+|.+.++|+.|+..||+..|.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~--------i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--------IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEE--------EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999987 5565433 589999999999999999999999999999999986
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.4e-09 Score=98.83 Aligned_cols=82 Identities=32% Similarity=0.450 Sum_probs=74.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhc-CceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTI-GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~-G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
....+||..||..+.+.+|..+|.+| |.+.. +++.+++.||.|++||||+|++++.|+-|-+.||++.|++
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r--------~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTR--------FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEE--------EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 35678999999999999999999998 56655 7778999999999999999999999999999999999999
Q ss_pred ceEEEEecccC
Q 016532 83 NLIGVFIAESR 93 (388)
Q Consensus 83 r~I~V~~a~~~ 93 (388)
+.|.+.+-.+.
T Consensus 120 ~lL~c~vmppe 130 (214)
T KOG4208|consen 120 HLLECHVMPPE 130 (214)
T ss_pred heeeeEEeCch
Confidence 99999998765
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.98 E-value=6.6e-10 Score=105.36 Aligned_cols=75 Identities=25% Similarity=0.328 Sum_probs=69.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
.+|||+|||..+++.+|+.+|++||+|.++. |++ .|+||..++...|+.||..|++..|+|..|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECD--------IvK--------NYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECD--------IVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeee--------eec--------ccceEEeecccccHHHHhhcccceecceEE
Confidence 5799999999999999999999999999954 764 589999999999999999999999999999
Q ss_pred EEEecccCCCC
Q 016532 86 GVFIAESRGKD 96 (388)
Q Consensus 86 ~V~~a~~~~~~ 96 (388)
.|+.++++++.
T Consensus 67 nVeaSksKsk~ 77 (346)
T KOG0109|consen 67 NVEASKSKSKA 77 (346)
T ss_pred EEEeccccCCC
Confidence 99999988553
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.96 E-value=6.7e-10 Score=113.03 Aligned_cols=81 Identities=32% Similarity=0.434 Sum_probs=75.3
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
.|||+||..++|+++|..+|+.||.|.. |.+++|..||.++||+||+|.+.++|..|++.|||.+|.|+.|+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~--------v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIEN--------VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCccccee--------eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 3899999999999999999999999998 78999999999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 016532 87 VFIAESRGK 95 (388)
Q Consensus 87 V~~a~~~~~ 95 (388)
|..-.-+..
T Consensus 352 V~~v~~r~~ 360 (549)
T KOG0147|consen 352 VSVVTERVD 360 (549)
T ss_pred EEEeeeecc
Confidence 988665443
No 62
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=6e-09 Score=105.57 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=67.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
.+|||.|||+++++.+|+++|.+||.|+... |.+.. + .++..+||||+|.+...++.||++- -..|.+++|
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~------I~vr~-~-~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl 359 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGG------IQVRS-P-GGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKL 359 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccc------eEEec-c-CCCcCceEEEEEeecchhhhhhhcC-ccccCCeeE
Confidence 4599999999999999999999999999854 44433 2 2334499999999999999999854 677889999
Q ss_pred EEEecccCCCC
Q 016532 86 GVFIAESRGKD 96 (388)
Q Consensus 86 ~V~~a~~~~~~ 96 (388)
.|+..++....
T Consensus 360 ~Veek~~~~~g 370 (419)
T KOG0116|consen 360 NVEEKRPGFRG 370 (419)
T ss_pred EEEeccccccc
Confidence 99988775543
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=4.9e-10 Score=108.92 Aligned_cols=76 Identities=33% Similarity=0.370 Sum_probs=73.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
..|||+.|.+.+.|+.|+..|..||.|++ |.+.+|+.|++.++||||+|+-++.|+-|++.||+..+.|+.|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKS--------InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcce--------eecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 46999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred EEEe
Q 016532 86 GVFI 89 (388)
Q Consensus 86 ~V~~ 89 (388)
+|..
T Consensus 186 KVgr 189 (544)
T KOG0124|consen 186 KVGR 189 (544)
T ss_pred cccC
Confidence 9874
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.94 E-value=1.2e-09 Score=113.88 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCC--CCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRT--GRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~t--g~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
....+|||+|||+.+|+++|.++|.+|+.+...... +.+.+.+. +...++||||+|.++++|+.||. |++..|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~----~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN----INKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE----ECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 356799999999999999999999986322210000 11112222 24568999999999999999995 999999
Q ss_pred cCceEEEEec
Q 016532 81 HGNLIGVFIA 90 (388)
Q Consensus 81 ~Gr~I~V~~a 90 (388)
.|..|.|...
T Consensus 248 ~g~~l~v~r~ 257 (509)
T TIGR01642 248 SNVFLKIRRP 257 (509)
T ss_pred eCceeEecCc
Confidence 9999998654
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.88 E-value=1.4e-08 Score=100.98 Aligned_cols=81 Identities=23% Similarity=0.332 Sum_probs=73.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHH-hcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFG-TIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~-~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+||.|||+++.+.+|+++|. +.|.|.. |.|+.|. +++++|+|.|+|.++|.+++|++.||.+++.|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~y--------veLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEY--------VELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEe--------eeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 45699999999999999999996 6799988 7798887 599999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016532 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|......+
T Consensus 115 ~l~vKEd~d~q 125 (608)
T KOG4212|consen 115 ELVVKEDHDEQ 125 (608)
T ss_pred eEEEeccCchh
Confidence 99998765543
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.86 E-value=6.6e-09 Score=95.71 Aligned_cols=83 Identities=27% Similarity=0.406 Sum_probs=72.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHH----HHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016532 3 MANGSVYVCNLPHGTDEDMLAE----YFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~----~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
.++.||||.||+.-+..++|+. +|++||.|.. |... + |.+.+|-|||.|.+.+.|-.|+..|+|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild--------I~a~--k-t~KmRGQA~VvFk~~~~As~A~r~l~gf 75 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD--------ISAF--K-TPKMRGQAFVVFKETEAASAALRALQGF 75 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEE--------EEec--C-CCCccCceEEEecChhHHHHHHHHhcCC
Confidence 3555999999999999999887 9999999976 3333 2 6789999999999999999999999999
Q ss_pred eecCceEEEEecccCCCC
Q 016532 79 DFHGNLIGVFIAESRGKD 96 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~~ 96 (388)
.|.|+.|.|+||++....
T Consensus 76 pFygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 76 PFYGKPMRIQYAKSDSDI 93 (221)
T ss_pred cccCchhheecccCccch
Confidence 999999999999987653
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=3.3e-09 Score=100.70 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+++|+|+||.+.+|..+|++.|.+||.|.+++ |++ .|+||.|+-.++|..||..|++.+|.|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecd--------ivk--------dy~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECD--------IVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeee--------eec--------ceeEEEEeeccchHHHHhcccccccccc
Confidence 568999999999999999999999999998844 654 6999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016532 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|+|+++.++-.
T Consensus 141 ~m~vq~stsrlr 152 (346)
T KOG0109|consen 141 RMHVQLSTSRLR 152 (346)
T ss_pred eeeeeeeccccc
Confidence 999999998754
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.8e-08 Score=99.98 Aligned_cols=81 Identities=25% Similarity=0.300 Sum_probs=73.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++..|||.||+++++..+|.++|+.||.|.+ |+|..+.. | ++|| ||+|+++++|++||..|||..+.++
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS--------~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILS--------CKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeE--------EEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 4556999999999999999999999999999 66988875 4 9999 9999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016532 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.....+..
T Consensus 144 ki~vg~~~~~~e 155 (369)
T KOG0123|consen 144 KIYVGLFERKEE 155 (369)
T ss_pred eeEEeeccchhh
Confidence 999998877654
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=3.6e-08 Score=103.15 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=68.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT---NEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T---g~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
++|||.||++.+|.++|..+|...|.|.+ |.|...+.. -.|.||+||+|.++++|+.||..|+|..|+|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS--------~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLS--------IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEE--------EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 34999999999999999999999999998 555544421 2356999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016532 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|.|.++.
T Consensus 588 H~l~lk~S~ 596 (725)
T KOG0110|consen 588 HKLELKISE 596 (725)
T ss_pred ceEEEEecc
Confidence 999999998
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.69 E-value=4.8e-08 Score=95.68 Aligned_cols=86 Identities=24% Similarity=0.343 Sum_probs=78.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||++||.++++++|+++|.+||.|.. +.|+.|+.+..+++|+||+|.+.+++.+++. ..-..|.++.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~--------~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~ 167 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVAD--------VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKK 167 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEe--------eEEeecccccccccceeeEeccccccceecc-cceeeecCce
Confidence 458999999999999999999999998877 7799999999999999999999999999887 7778899999
Q ss_pred EEEEecccCCCCCcc
Q 016532 85 IGVFIAESRGKDDHA 99 (388)
Q Consensus 85 I~V~~a~~~~~~~~~ 99 (388)
+.|..|.++......
T Consensus 168 vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 168 VEVKRAIPKEVMQST 182 (311)
T ss_pred eeEeeccchhhcccc
Confidence 999999998765543
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.69 E-value=3.3e-08 Score=100.92 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=74.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
...|||.+|+..|...+|+.+|++||.|+-+ +|+.+..|--.++|+||++.+.++|.++|+.|+-.+|.|++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGA--------KVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGA--------KVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceece--------eeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 4679999999999999999999999999884 48888877778999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 016532 85 IGVFIAESRG 94 (388)
Q Consensus 85 I~V~~a~~~~ 94 (388)
|.|+.++..+
T Consensus 477 ISVEkaKNEp 486 (940)
T KOG4661|consen 477 ISVEKAKNEP 486 (940)
T ss_pred eeeeecccCc
Confidence 9999987654
No 72
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=86.94 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=69.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec---
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH--- 81 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~--- 81 (388)
-.||||.+||.++..-+|..+|..|--...+. |+ +.++.....+-+|||+|.+..+|++|++.|||..|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgsl------LK-~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSL------LK-YTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCcccee------ee-eccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 47999999999999999999999886555431 22 223322234579999999999999999999999998
Q ss_pred CceEEEEecccCCCCC
Q 016532 82 GNLIGVFIAESRGKDD 97 (388)
Q Consensus 82 Gr~I~V~~a~~~~~~~ 97 (388)
+..|+|++|++..+..
T Consensus 107 ~stLhiElAKSNtK~k 122 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRK 122 (284)
T ss_pred CceeEeeehhcCcccc
Confidence 7899999999877654
No 73
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=98.65 E-value=3e-08 Score=95.00 Aligned_cols=98 Identities=24% Similarity=0.498 Sum_probs=66.1
Q ss_pred cccCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCC----CCCCC-----C-------------CCCCC-----
Q 016532 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGR----AGGRG-----R-------------GRAGN----- 195 (388)
Q Consensus 143 ~~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g----~g~~~-----~-------------g~~~~----- 195 (388)
..++|||+|+ .|..+||+++..|++|+++++.+..-.... ...+. . ..+..
T Consensus 135 ~~~~GDW~Cp--~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~~~~~~ 212 (280)
T KOG4198|consen 135 PWRSGDWECP--GCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEMSESRV 212 (280)
T ss_pred CccccCcccC--CCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCccccccc
Confidence 4578999999 999999999999999999999755211100 00000 0 00000
Q ss_pred ---CC--CCC------CCCCCCCCCCCCCCCccCCCCCccccccccccccCCCCCCCC
Q 016532 196 ---ES--GSQ------GRQIGAATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 196 ---~~--~~~------~~~~~~~~~~~~~~dw~c~~c~~~n~~~~~~c~~c~~~~~~~ 242 (388)
.. .+. .....-.+...+.+||.|..|.++||.++..|+.|.++.+..
T Consensus 213 d~~~~~~~~~~~~e~~~~~~sr~s~~~~dgdw~~~s~~~~~~r~r~a~~~c~~~~~~~ 270 (280)
T KOG4198|consen 213 DGADVKGNFSSDDESRLEPLSRGSKSSRDGDWMCESCKAENFRRRNACLKCISPRGSF 270 (280)
T ss_pred ccccccccccccccccccccccCcccccCCCcccccccchhhhhhhhhhccccCcccc
Confidence 00 000 112333445688999999999999999999999999877653
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=8.5e-08 Score=90.65 Aligned_cols=84 Identities=29% Similarity=0.379 Sum_probs=74.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
-+++|+|.|||+.|++++|+++|..|+.++. +.|-.++ +|.+.|.|-|.|...++|.+||+.|+++.|+|.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r--------~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKR--------VAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceE--------EeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 3478999999999999999999999997776 5566666 699999999999999999999999999999999
Q ss_pred eEEEEecccCCCC
Q 016532 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
.|++.+..+....
T Consensus 153 ~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 153 PMKIEIISSPSQS 165 (243)
T ss_pred eeeeEEecCcccc
Confidence 9999998776553
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.63 E-value=3e-08 Score=97.13 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=75.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||++|++.++++.|+..|.+||.|.. +.|++++.|+.+++|+||+|++++...++|. ..-..|.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d--------~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD--------CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceee--------EEEeccCCCCCcccccceecCCCcchheeec-ccccccCCc
Confidence 5679999999999999999999999999998 6699999999999999999999999988887 444568999
Q ss_pred eEEEEecccCCCC
Q 016532 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
.|.+..|.++...
T Consensus 76 ~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 76 SVEPKRAVSREDQ 88 (311)
T ss_pred cccceeccCcccc
Confidence 9999998887643
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=8.6e-08 Score=101.03 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
-++||||++|+..|+|.+|..+|+.||.|.+ |.++- ++++|||.+...++|++||.+|..+.|..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqS--------i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQS--------IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhccccee--------Eeecc------CCceeEEEEeehhHHHHHHHHHhcccccce
Confidence 4689999999999999999999999999998 54543 568999999999999999999999999999
Q ss_pred eEEEEecccCCCC
Q 016532 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
.|+|.||..+...
T Consensus 486 ~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 486 TIKIAWAVGKGPK 498 (894)
T ss_pred eeEEeeeccCCcc
Confidence 9999999866443
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=1e-07 Score=92.95 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=76.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
+.|||..+.++.+|+||+.+|+.||.|+. +.+-+.+.++..+||+||+|.+..+...||..||=..|.|..|
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~--------C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVK--------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceee--------EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 58999999999999999999999999998 6699999999999999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016532 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
+|-.+...+.
T Consensus 283 RVGk~vTPP~ 292 (544)
T KOG0124|consen 283 RVGKCVTPPD 292 (544)
T ss_pred ecccccCCCc
Confidence 9988766543
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=5.7e-08 Score=91.37 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=73.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-- 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~-- 81 (388)
+..+|||+-|...-.|+|++.+|..||.|.+ +.|++... |.+||+|||.|.+..+|+.||..|+|...+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e--------~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEE--------CTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcce--------eEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 4679999999999999999999999999998 77888775 899999999999999999999999998654
Q ss_pred -CceEEEEecccCCC
Q 016532 82 -GNLIGVFIAESRGK 95 (388)
Q Consensus 82 -Gr~I~V~~a~~~~~ 95 (388)
...|.|.++....+
T Consensus 89 ASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 89 ASSSLVVKFADTDKE 103 (371)
T ss_pred CccceEEEeccchHH
Confidence 37899999977544
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.3e-07 Score=95.09 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=70.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
..|||+ ++||+..|.++|+.+|.+.+ |+|.+|. | +.|||||.|.++++|++||..||...|.|++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s--------~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLS--------IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCcee--------EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 469999 99999999999999999999 8899998 7 99999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016532 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
.|-++...+.
T Consensus 68 rim~s~rd~~ 77 (369)
T KOG0123|consen 68 RIMWSQRDPS 77 (369)
T ss_pred EeehhccCCc
Confidence 9999876543
No 80
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.57 E-value=3.6e-07 Score=74.78 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=69.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH---- 81 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~---- 81 (388)
+||+|.|||...|.++|.+++...-.-.-+- +.|+.|..|....|||||.|.+++.|...+..++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF------~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDF------FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceE------EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 6999999999999999999997642222222 788999999999999999999999999999999999886
Q ss_pred CceEEEEecccC
Q 016532 82 GNLIGVFIAESR 93 (388)
Q Consensus 82 Gr~I~V~~a~~~ 93 (388)
.+...|.+|+-+
T Consensus 76 ~Kvc~i~yAriQ 87 (97)
T PF04059_consen 76 KKVCEISYARIQ 87 (97)
T ss_pred CcEEEEehhHhh
Confidence 477888888754
No 81
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=1.6e-07 Score=91.24 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=64.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH-hCCceecCc
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEW-FNNKDFHGN 83 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~-lng~~i~Gr 83 (388)
-.+|||++|...++|.+|..+|.+||.|.+ |.|+..+ ++|||+|.+.++|+.|.+. ++-..|+|.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--------i~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--------IRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeee--------EEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 369999999999999999999999999998 6666543 6999999999999998875 555678999
Q ss_pred eEEEEeccc
Q 016532 84 LIGVFIAES 92 (388)
Q Consensus 84 ~I~V~~a~~ 92 (388)
+|.|.+..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999888
No 82
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=6.3e-08 Score=101.35 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=75.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
-++|+|.|||+..+-.+|+.+|..||.|.+ |.|+.....+.++|||||+|.++.+|..|+..|..+.|.|+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlks--------vRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKS--------VRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceee--------eccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 368999999999999999999999999998 778776666778999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.++||.....
T Consensus 685 LVLEwA~~d~~ 695 (725)
T KOG0110|consen 685 LVLEWAKSDNT 695 (725)
T ss_pred hheehhccchH
Confidence 99999987543
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.50 E-value=2.4e-07 Score=92.34 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=67.8
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
+....+|||.|||.++|+..|++-|..||.|..+. |+ +.++++| .|.|.++++|+.|+..|++..|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yad--------im---e~GkskG--VVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYAD--------IM---ENGKSKG--VVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhh--------hh---ccCCccc--eEEecCHHHHHHHHHHhccCccc
Confidence 45678999999999999999999999999999854 43 2477777 89999999999999999999999
Q ss_pred CceEEEEec
Q 016532 82 GNLIGVFIA 90 (388)
Q Consensus 82 Gr~I~V~~a 90 (388)
|+.|.|.|.
T Consensus 600 Gr~I~V~y~ 608 (608)
T KOG4212|consen 600 GRNIKVTYF 608 (608)
T ss_pred CceeeeeeC
Confidence 999999874
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.46 E-value=4.9e-07 Score=85.37 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
..+...|||+|+...+|.++|+.+|..||.|.. |.|+.++.++.+++||||+|.+.+.++.||. |++..|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~--------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINR--------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccc--------eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 356789999999999999999999999999986 6799999999999999999999999999999 9999999
Q ss_pred CceEEEEecccC
Q 016532 82 GNLIGVFIAESR 93 (388)
Q Consensus 82 Gr~I~V~~a~~~ 93 (388)
+..|.|.+....
T Consensus 169 ~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 169 GPAIEVTLKRTN 180 (231)
T ss_pred cccceeeeeeee
Confidence 999999998775
No 85
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.41 E-value=7.4e-08 Score=61.85 Aligned_cols=30 Identities=43% Similarity=1.032 Sum_probs=24.7
Q ss_pred CCCCccCCCCCccccccccccccCCCCCCC
Q 016532 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 212 ~~~dw~c~~c~~~n~~~~~~c~~c~~~~~~ 241 (388)
++++|.|+.|.++|++....|.+|.+|||+
T Consensus 1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 468999999999999999999999999984
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=1.2e-07 Score=86.91 Aligned_cols=79 Identities=22% Similarity=0.211 Sum_probs=69.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...||||+||...|+|+.|.++|-+-|.|.. |.|..++. ++.+ ||||+|.++.+..-||+.|||..+.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k--------v~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK--------VGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEE--------EeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 3569999999999999999999999999987 66776665 5666 999999999999999999999999999
Q ss_pred eEEEEeccc
Q 016532 84 LIGVFIAES 92 (388)
Q Consensus 84 ~I~V~~a~~ 92 (388)
.|.|.+-..
T Consensus 78 e~q~~~r~G 86 (267)
T KOG4454|consen 78 EEQRTLRCG 86 (267)
T ss_pred hhhcccccC
Confidence 998887543
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.35 E-value=3.6e-07 Score=85.58 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=75.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
....||.+-|..+++.+.|...|.+|-..... ++++++.|++++||+||.|.++.++..||..|+|+.+..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~a--------kviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKA--------KVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhc--------cccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 45789999999999999999999999888774 4999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016532 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.+..+..+.
T Consensus 261 piklRkS~wke 271 (290)
T KOG0226|consen 261 PIKLRKSEWKE 271 (290)
T ss_pred hhHhhhhhHHh
Confidence 99887766544
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=5.8e-07 Score=83.44 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=63.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
..|||++||+.+.+.+|+.+|..||.|..+ .+ + .+|+||+|+++.+|..||..||+++|.+..+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~--------~m-k-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA--------DM-K-------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc--------ee-e-------cccceeccCchhhhhcccchhcCceecceee
Confidence 369999999999999999999999999872 22 1 2789999999999999999999999999888
Q ss_pred EEEecccC
Q 016532 86 GVFIAESR 93 (388)
Q Consensus 86 ~V~~a~~~ 93 (388)
.|+++...
T Consensus 66 vve~~r~~ 73 (216)
T KOG0106|consen 66 VVEHARGK 73 (216)
T ss_pred eeeccccc
Confidence 88888764
No 89
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.22 E-value=1.1e-06 Score=86.49 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=56.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT---NEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T---g~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
..|-|.||.+++|.++|..+|.-+|.|.. |.||-+... ....-.|||-|.+...+..|.. |....|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~e--------lrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPE--------LRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccc--------ccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 48999999999999999999999999988 445543211 1234589999999999999987 55555555
Q ss_pred ceEEEEec
Q 016532 83 NLIGVFIA 90 (388)
Q Consensus 83 r~I~V~~a 90 (388)
..|.|.+.
T Consensus 79 raliv~p~ 86 (479)
T KOG4676|consen 79 RALIVRPY 86 (479)
T ss_pred eeEEEEec
Confidence 55555443
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.15 E-value=5.7e-06 Score=83.88 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=66.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
...|-|.+||+++|++||.++|+.++ |.. |+....||++.|.|||+|.+.+++++||+ .+-..+..+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~----------~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RY 77 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IEN----------LEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRY 77 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeE----------EEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCce
Confidence 45677889999999999999999886 443 45556679999999999999999999998 6777788899
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|..+...+.
T Consensus 78 IEVf~~~~~e~ 88 (510)
T KOG4211|consen 78 IEVFTAGGAEA 88 (510)
T ss_pred EEEEccCCccc
Confidence 99998865543
No 91
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=98.13 E-value=1.2e-06 Score=54.18 Aligned_cols=26 Identities=42% Similarity=1.099 Sum_probs=24.4
Q ss_pred CCccCCCCCccccccccccccCCCCC
Q 016532 214 NDWSCPMCGNINWAKRTKCNICNTNK 239 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~~~~c~~c~~~~ 239 (388)
++|.|++|.++|++.+..|.+|++|.
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p~ 26 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAPX 26 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCcC
Confidence 68999999999999999999999873
No 92
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.12 E-value=4.3e-06 Score=87.76 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=71.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK---TTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk---~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
+.++.|||+||++.++++.|...|..||.|.. |+|+.-+ +....+.++||.|.+..+|++|+..|++..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlas--------vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLAS--------VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccc--------eeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 34688999999999999999999999999998 5565433 234456799999999999999999999999
Q ss_pred ecCceEEEEecccCC
Q 016532 80 FHGNLIGVFIAESRG 94 (388)
Q Consensus 80 i~Gr~I~V~~a~~~~ 94 (388)
++...|++-+++..+
T Consensus 244 v~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 244 VMEYEMKLGWGKAVP 258 (877)
T ss_pred eeeeeeeeccccccc
Confidence 999999999986543
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.07 E-value=4.1e-06 Score=81.56 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=68.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
..+||+||-+.||++||.+.+...|...... |+++.++.+|++||||+|...+..+.++.|+.|.-++|.|+.-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d------mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFAD------MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhh------hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 4689999999999999999998888765544 7899999999999999999999999999999999999999765
Q ss_pred EEEe
Q 016532 86 GVFI 89 (388)
Q Consensus 86 ~V~~ 89 (388)
.|..
T Consensus 155 ~V~~ 158 (498)
T KOG4849|consen 155 TVLS 158 (498)
T ss_pred eeec
Confidence 5544
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=4.9e-06 Score=85.85 Aligned_cols=83 Identities=27% Similarity=0.307 Sum_probs=77.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
....|||++||..+++.++.+++..||.++. ..++.+..|+.+++|||.+|.++.....|+..|||..+.++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~--------f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKA--------FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchh--------heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 3568999999999999999999999999998 77999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016532 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|+.|....
T Consensus 360 ~lvvq~A~~g~ 370 (500)
T KOG0120|consen 360 KLVVQRAIVGA 370 (500)
T ss_pred eeEeehhhccc
Confidence 99999987643
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=5e-06 Score=85.36 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=63.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
++..+|+|-|||..|++++|..+|+.||.|.. |+.. -...+..||+|.+..+|++|++.|++..|.+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--------ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--------IRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhh--------hhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 45679999999999999999999999999987 3333 3446899999999999999999999999999
Q ss_pred ceEE
Q 016532 83 NLIG 86 (388)
Q Consensus 83 r~I~ 86 (388)
+.|+
T Consensus 140 ~~~k 143 (549)
T KOG4660|consen 140 KRIK 143 (549)
T ss_pred hhhc
Confidence 8887
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.90 E-value=2.6e-05 Score=79.24 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=65.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|-|.+||+.+|++||.+||+-.-.+.. . |.++.++. +++.|.|||+|++.+.|++||. -|-..|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-g------i~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhR 172 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-G------ILLPMDQR-GRPTGEAFVQFESQESAEIALG-RHRENIGHR 172 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCccccc-c------eeeeccCC-CCcccceEEEecCHHHHHHHHH-HHHHhhccc
Confidence 3468889999999999999999998765543 2 65666664 7799999999999999999998 455567778
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
-|.|..+...
T Consensus 173 YIEvF~Ss~~ 182 (510)
T KOG4211|consen 173 YIEVFRSSRA 182 (510)
T ss_pred eEEeehhHHH
Confidence 8898887643
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.83 E-value=5.9e-05 Score=69.89 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=67.3
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|..++.+||+.|||..++.+.|..+|.+|...+. |+++... .+.|||+|.+...|..|+..|++..|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~ke--------ir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKE--------IRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccce--------eEeccCC-----CceeEEecchhhhhHHHhhhhcccee
Confidence 3567889999999999999999999999988877 6666544 47999999999999999999999888
Q ss_pred c-CceEEEEecc
Q 016532 81 H-GNLIGVFIAE 91 (388)
Q Consensus 81 ~-Gr~I~V~~a~ 91 (388)
- ...|.|.++.
T Consensus 209 t~~~~m~i~~a~ 220 (221)
T KOG4206|consen 209 TKKNTMQITFAK 220 (221)
T ss_pred ccCceEEecccC
Confidence 7 7788887764
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.79 E-value=2.2e-05 Score=72.59 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=52.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
-.||||.||.+++||++|+.+|+.|--+.. ++| +.+ .| ...|||+|++.+.|..||..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~--------l~~-~~~-~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHI--------LKI-RAR-GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceE--------EEE-ecC-CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 368999999999999999999999976664 333 333 23 358999999999999999999987653
No 99
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.74 E-value=0.00012 Score=72.89 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=69.8
Q ss_pred CcEEEeccCC-CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 5 NGSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 5 ~~tlfV~nLp-~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..|.|.||. ..+|.+.|..+|+.||.|.. |+|+.++. --|.|+|.+...|+-||+.|+|..|.|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqR--------Vkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQR--------VKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGK 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEE--------EEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCc
Confidence 5788899987 67899999999999999998 88988873 4699999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016532 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|+|.+++-...
T Consensus 364 ~lrvt~SKH~~v 375 (492)
T KOG1190|consen 364 KLRVTLSKHTNV 375 (492)
T ss_pred eEEEeeccCccc
Confidence 999999986543
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.73 E-value=0.00012 Score=57.91 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=46.6
Q ss_pred cEEEeccCCCCCCHHHHH----HHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 6 GSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~----~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
+.|||.|||.+.+...|. +++..+|--+ +.|. .+.|+|-|.+++.|..|.+.|++..+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---------l~v~--------~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---------LSVS--------GGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E---------EE----------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---------EEEe--------CCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 579999999999987665 5555676432 2231 267999999999999999999999999
Q ss_pred CceEEEEeccc
Q 016532 82 GNLIGVFIAES 92 (388)
Q Consensus 82 Gr~I~V~~a~~ 92 (388)
|.+|.|.+...
T Consensus 66 G~kI~v~~~~~ 76 (90)
T PF11608_consen 66 GNKISVSFSPK 76 (90)
T ss_dssp SS--EEESS--
T ss_pred cceEEEEEcCC
Confidence 99999999754
No 101
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.66 E-value=2.5e-05 Score=80.27 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=74.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..|||+.-|+..+++-+|.++|+.+|.|.. |.||.|+.++.++|.|||+|.+.+++..||. |.|..++|.+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrd--------VriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~p 249 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRD--------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVP 249 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcce--------eEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCce
Confidence 357888889999999999999999999988 8899999999999999999999999999995 9999999999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|+.......
T Consensus 250 v~vq~sEaekn 260 (549)
T KOG0147|consen 250 VIVQLSEAEKN 260 (549)
T ss_pred eEecccHHHHH
Confidence 99998765443
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.65 E-value=4e-05 Score=74.68 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=75.4
Q ss_pred CCcEEE-eccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 4 ANGSVY-VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlf-V~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.+|| |.+|+..+++++|..+|..++.|.. |.+..+..|+.+++||||.|.....+..++.. +...+.+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~--------~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITS--------VRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG 253 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCccee--------eccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC
Confidence 345666 9999999999999999999999998 78999999999999999999999999999986 7888999
Q ss_pred ceEEEEecccCCCC
Q 016532 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
.++.|.+..+....
T Consensus 254 ~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 254 RPLRLEEDEPRPKS 267 (285)
T ss_pred cccccccCCCCccc
Confidence 99999998876553
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.52 E-value=0.00016 Score=70.41 Aligned_cols=80 Identities=23% Similarity=0.406 Sum_probs=63.4
Q ss_pred CCcEEEeccCCCCCCHHH----H--HHHHHhcCceeecCCCCCCeEEEEecCCCC---CcccE--EEEEeCCHHHHHHHH
Q 016532 4 ANGSVYVCNLPHGTDEDM----L--AEYFGTIGLLKKDKRTGRPKVWLYRDKTTN---EYKGD--ATVTYEDPHAALAAV 72 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teed----L--~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg---~srG~--aFVeF~s~e~A~~Ai 72 (388)
..+-|||-+||+.+..++ | .++|.+||.|.. |+.++.|- ...+. .||+|.+.++|..||
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K----------IvvNkkt~s~nst~~h~gvYITy~~kedAarcI 182 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK----------IVVNKKTSSLNSTASHAGVYITYSTKEDAARCI 182 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeE----------EEecccccccccccccceEEEEecchHHHHHHH
Confidence 456789999998887766 3 388999999976 55555541 11122 399999999999999
Q ss_pred HHhCCceecCceEEEEecccC
Q 016532 73 EWFNNKDFHGNLIGVFIAESR 93 (388)
Q Consensus 73 ~~lng~~i~Gr~I~V~~a~~~ 93 (388)
...+|..++|+.|+..|...+
T Consensus 183 a~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 183 AEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred HHhccccccCceEeeecCchH
Confidence 999999999999999997765
No 104
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=97.49 E-value=3.7e-05 Score=49.24 Aligned_cols=30 Identities=50% Similarity=1.119 Sum_probs=24.1
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCC
Q 016532 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~ 176 (388)
++|+|.|+ .|..+|++....|+.|++++|.
T Consensus 1 k~g~W~C~--~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 1 KEGDWKCP--SCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp -SSSEEET--TTTEEEESSSSB-TTT--BTTB
T ss_pred CCcCccCC--CCcCCchHHhhhhhCcCCCCcC
Confidence 36899998 8999999999999999999873
No 105
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=8.4e-05 Score=69.19 Aligned_cols=70 Identities=21% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.....|+|.+|+..+.+.+|..+|..+|.+... +. ..+++||+|...++|..||..|++..|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~---------~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV---------DA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNG 160 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchh---------hh-------hccccceeehhhhhhhhcchhccchhhcC
Confidence 346789999999999999999999999999541 22 35799999999999999999999999999
Q ss_pred ceEEEE
Q 016532 83 NLIGVF 88 (388)
Q Consensus 83 r~I~V~ 88 (388)
+.|.|.
T Consensus 161 ~~l~~~ 166 (216)
T KOG0106|consen 161 RRISVE 166 (216)
T ss_pred ceeeec
Confidence 999993
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.001 Score=68.88 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=61.6
Q ss_pred CcEEEeccCCCCCC------HHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016532 5 NGSVYVCNLPHGTD------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 5 ~~tlfV~nLp~~~t------eedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
.+.|+|-|+|..-. ...|..+|+++|.|.. +.++.+..+| .+||.|++|.++.+|+.||+.|||+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--------~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--------MYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--------eeeccCccCC-eeeEEEEEecChhhHHHHHHhcccc
Confidence 46789999985332 2355688999999887 6677777755 9999999999999999999999999
Q ss_pred eec-CceEEEEec
Q 016532 79 DFH-GNLIGVFIA 90 (388)
Q Consensus 79 ~i~-Gr~I~V~~a 90 (388)
.|+ ++++.|..-
T Consensus 129 ~ldknHtf~v~~f 141 (698)
T KOG2314|consen 129 RLDKNHTFFVRLF 141 (698)
T ss_pred eecccceEEeehh
Confidence 887 567776653
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.12 E-value=0.0013 Score=69.39 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=66.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
+.|-|.|+|+.++-+||.+||.-|-.+..+ |.|-.+ +.|.+.|.|.|.|++.++|..|...|++..|..++|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~s-------I~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNS-------IRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCc-------eeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 478899999999999999999999777653 545444 359999999999999999999999999999999999
Q ss_pred EEEe
Q 016532 86 GVFI 89 (388)
Q Consensus 86 ~V~~ 89 (388)
.|.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8875
No 108
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.07 E-value=0.00029 Score=43.39 Aligned_cols=25 Identities=52% Similarity=1.278 Sum_probs=23.6
Q ss_pred CCCCCCCCCCcccccccccccccCCCC
Q 016532 147 GDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (388)
Q Consensus 147 gDW~C~~~~cg~~Nfa~R~~C~rC~~~ 173 (388)
|+|+|+ .|.++||+.+..|++|++|
T Consensus 1 g~W~C~--~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECP--ACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCC--CCCCcChhhhccccccCCc
Confidence 689999 8999999999999999986
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.05 E-value=0.00091 Score=66.80 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+++.+|.+.|||++++|++|+.+|..-|...... ... ++.+-+|++.+.+.++|..|+..++...+..
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkaf--------kff----~kd~kmal~q~~sveeA~~ali~~hnh~lge 479 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAF--------KFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGE 479 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEee--------eec----CCCcceeecccCChhHhhhhccccccccCCC
Confidence 5678999999999999999999999988775521 222 2345699999999999999999999888875
Q ss_pred -ceEEEEeccc
Q 016532 83 -NLIGVFIAES 92 (388)
Q Consensus 83 -r~I~V~~a~~ 92 (388)
..|+|+++++
T Consensus 480 n~hlRvSFSks 490 (492)
T KOG1190|consen 480 NHHLRVSFSKS 490 (492)
T ss_pred CceEEEEeecc
Confidence 5899999876
No 110
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.03 E-value=0.0011 Score=55.08 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=42.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-----ee
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK-----DF 80 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~-----~i 80 (388)
..|+|.+|+..++-++|+.+|++|+.|.. |-+.. |. -.|||-|.+++.|+.|+..+.-. .|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~y--------VD~~~----G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i 67 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAY--------VDFSR----GD--TEGYVRFKTPEAAQKALEKLKEANDGKLKI 67 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEE--------EE--T----T---SEEEEEESS---HHHHHHHHHHTTTS-B-T
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcce--------EEecC----CC--CEEEEEECCcchHHHHHHHHHhccCCceEE
Confidence 36889999999999999999999998876 33332 22 37999999999999999866433 45
Q ss_pred cCceEEEEe
Q 016532 81 HGNLIGVFI 89 (388)
Q Consensus 81 ~Gr~I~V~~ 89 (388)
.+..+.+.+
T Consensus 68 ~~~~~~~~v 76 (105)
T PF08777_consen 68 KGKEVTLEV 76 (105)
T ss_dssp TSSSEEEE-
T ss_pred cCceEEEEE
Confidence 566666655
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0022 Score=65.82 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=56.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHH-hcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFG-TIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~-~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
+..||||++||--++.++|..+|. -||.|.- +-|=.|++-+.++|-+-|+|.+..+..+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~y--------aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY--------VGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEE--------EEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 457999999999999999999998 7999987 5688887778999999999999999999998
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.81 E-value=0.0018 Score=64.21 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=69.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
...|-+.+||+..+.++|..+|..|-.-..- --|.++.+.+ |.+.|.|||+|.+.+.|..|+...+.+.+..+.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f-----~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRF-----QGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhccc-----ceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 4578899999999999999999988644320 1167777765 899999999999999999999988888778999
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|..+.....
T Consensus 354 iEvfp~S~eel 364 (508)
T KOG1365|consen 354 IEVFPCSVEEL 364 (508)
T ss_pred EEEeeccHHHH
Confidence 99998765543
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.76 E-value=0.0075 Score=52.86 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=51.8
Q ss_pred CCCCcEEEeccCC------CCCCH---HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 016532 2 TMANGSVYVCNLP------HGTDE---DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (388)
Q Consensus 2 ~~~~~tlfV~nLp------~~~te---edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai 72 (388)
-++..||.|.=+. ..+.+ .+|.+.|..||.+.- |+++-+ .-+|+|.+-++|.+|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvL--------vRfv~~--------~mwVTF~dg~sALaal 87 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVL--------VRFVGD--------TMWVTFRDGQSALAAL 87 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECE--------EEEETT--------CEEEEESSCHHHHHHH
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEE--------EEEeCC--------eEEEEECccHHHHHHH
Confidence 4567788887666 23333 266778888998765 555443 3689999999999999
Q ss_pred HHhCCceecCceEEEEecccC
Q 016532 73 EWFNNKDFHGNLIGVFIAESR 93 (388)
Q Consensus 73 ~~lng~~i~Gr~I~V~~a~~~ 93 (388)
. |+|..|.|+.|+|.+..+.
T Consensus 88 s-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 88 S-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp H-GCCSEETTEEEEEEE----
T ss_pred c-cCCcEECCEEEEEEeCCcc
Confidence 8 9999999999999997763
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0038 Score=64.21 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=48.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecC---CCCCccc---EEEEEeCCHHHHHHHHHHh
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK---TTNEYKG---DATVTYEDPHAALAAVEWF 75 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk---~Tg~srG---~aFVeF~s~e~A~~Ai~~l 75 (388)
+.+|||++||++++|+.|...|..||.+..+ ..... .--.++| |+|+.|+++.++++.|...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~Vd---------WP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVD---------WPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEee---------cCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 5789999999999999999999999998752 33111 1123566 9999999999988877654
No 115
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.67 E-value=0.004 Score=45.26 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=41.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai 72 (388)
++.|-|.|.++...+..| .+|.+||.|.. +.+. ....+.||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~--------~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVL-EHFASFGEIVD--------IYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHHH-HHHHhcCCEEE--------EEcC------CCCcEEEEEECCHHHHHhhC
Confidence 367889999987775555 48889999987 3333 22468999999999999985
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.67 E-value=0.0091 Score=49.24 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=51.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecC------CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK------TTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk------~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
....|.|-+.|+.. ...|..+|++||.|... +.+..+. ..-....+..|+|.++.+|++||. .||
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~-------~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG 75 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEH-------FEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG 75 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECE-------EGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEe-------ecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC
Confidence 45678899999984 56677899999999872 1000000 001124699999999999999998 899
Q ss_pred ceecCc-eEEEEeccc
Q 016532 78 KDFHGN-LIGVFIAES 92 (388)
Q Consensus 78 ~~i~Gr-~I~V~~a~~ 92 (388)
..|.|. +|-|.+..+
T Consensus 76 ~i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 76 TIFSGSLMVGVKPCDP 91 (100)
T ss_dssp EEETTCEEEEEEE-HH
T ss_pred eEEcCcEEEEEEEcHH
Confidence 999885 555766643
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.019 Score=52.15 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=54.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
...|+|.+||++.++++|++++.+-|.|..+. |.+| +++.|+|...++++-||..|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfad--------v~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFAD--------VQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeee--------eecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 46899999999999999999999999998743 5554 47999999999999999999887665
No 118
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.47 E-value=0.0077 Score=59.75 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCCcEEEeccCC--CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 3 MANGSVYVCNLP--HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp--~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
.++..|.+.=|+ +.+|.+.|.++....|.|.. |.|++. ++. -|.|+|++.+.|++|...|||..|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR--------IvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLR--------IVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEE--------EEEEec--cce---eeEEeechhHHHHHHHhhcccccc
Confidence 355666665555 57888999999999999987 545443 443 599999999999999999999988
Q ss_pred cC--ceEEEEecccCC
Q 016532 81 HG--NLIGVFIAESRG 94 (388)
Q Consensus 81 ~G--r~I~V~~a~~~~ 94 (388)
.. -+|+|+||++..
T Consensus 185 YsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPTR 200 (494)
T ss_pred cccceeEEEEecCcce
Confidence 64 789999998753
No 119
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.47 E-value=0.0027 Score=60.03 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=57.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCC--------CCccc----EEEEEeCCHHHHHHHH
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT--------NEYKG----DATVTYEDPHAALAAV 72 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T--------g~srG----~aFVeF~s~e~A~~Ai 72 (388)
...|||++||+.+...-|+++|++||.|-. |.|-....+ +.... -+.|+|.+...|..+.
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGR--------vylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iA 145 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGR--------VYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIA 145 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccce--------EEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999987 444333322 22222 3569999999999999
Q ss_pred HHhCCceecCce
Q 016532 73 EWFNNKDFHGNL 84 (388)
Q Consensus 73 ~~lng~~i~Gr~ 84 (388)
..||+..|.|+.
T Consensus 146 e~Lnn~~Iggkk 157 (278)
T KOG3152|consen 146 ELLNNTPIGGKK 157 (278)
T ss_pred HHhCCCccCCCC
Confidence 999999998853
No 120
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.46 E-value=0.003 Score=63.60 Aligned_cols=68 Identities=28% Similarity=0.379 Sum_probs=55.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEec---CCC--CCc--------ccEEEEEeCCHHHHH
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRD---KTT--NEY--------KGDATVTYEDPHAAL 69 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~d---k~T--g~s--------rG~aFVeF~s~e~A~ 69 (388)
+++.+|.+.|||.+-.-+-|.++|+.+|.|+. |+|..- +.. +.+ +-+|||+|+..+.|.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Iks--------IRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKS--------IRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceee--------eeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 57889999999999999999999999999998 666543 111 111 458999999999999
Q ss_pred HHHHHhCCc
Q 016532 70 AAVEWFNNK 78 (388)
Q Consensus 70 ~Ai~~lng~ 78 (388)
+|.+.|+..
T Consensus 301 KA~e~~~~e 309 (484)
T KOG1855|consen 301 KARELLNPE 309 (484)
T ss_pred HHHHhhchh
Confidence 999988544
No 121
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.39 E-value=0.011 Score=58.05 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=60.7
Q ss_pred CCcEEEeccCC----CCCC-------HHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 016532 4 ANGSVYVCNLP----HGTD-------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (388)
Q Consensus 4 ~~~tlfV~nLp----~~~t-------eedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai 72 (388)
.+.+|.|.||= ...+ +++|.+.-.+||.|.. |.|+ ++ .+.|.+.|.|.+.++|..||
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~--------vvv~-d~---hPdGvvtV~f~n~eeA~~ci 331 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRK--------VVVY-DR---HPDGVVTVSFRNNEEADQCI 331 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcce--------EEEe-cc---CCCceeEEEeCChHHHHHHH
Confidence 35678888862 2233 2455566788999987 5454 33 46799999999999999999
Q ss_pred HHhCCceecCceEEEEecccCC
Q 016532 73 EWFNNKDFHGNLIGVFIAESRG 94 (388)
Q Consensus 73 ~~lng~~i~Gr~I~V~~a~~~~ 94 (388)
..|+|..|.|+.|..++...+.
T Consensus 332 q~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 332 QTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHhcCeeecceEEEEEEeCCcc
Confidence 9999999999999998865543
No 122
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.32 E-value=0.0095 Score=61.93 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCceeecCCCCCCeEEEEec---CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecc
Q 016532 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRD---KTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91 (388)
Q Consensus 20 edL~~~F~~~G~i~~~~~tg~p~V~i~~d---k~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~ 91 (388)
++|+..+++||.|.+ |.|.+. .......|-.||+|.+.++++.|++.|+|..|.+++|...|-.
T Consensus 424 Edvr~ec~k~g~v~~--------v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRS--------VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeE--------EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 344556678999988 556555 1122335678999999999999999999999999999888754
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.19 E-value=0.0056 Score=66.57 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
..+++.|+|++|++++....|..+|..||.|.. |-.+. +. -||+|.|++...|+.|+..|-+..|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~----------Idy~h--gq--~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI----------IDYRH--GQ--PYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCccee----------eeccc--CC--cceeeecccCccchhhHHHHhcCcCC
Confidence 356789999999999999999999999999986 33332 33 49999999999999999999999998
Q ss_pred C--ceEEEEecccCCC
Q 016532 82 G--NLIGVFIAESRGK 95 (388)
Q Consensus 82 G--r~I~V~~a~~~~~ 95 (388)
+ +.|.|.|+.....
T Consensus 518 ~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 518 GPPRRLRVDLASPPGA 533 (975)
T ss_pred CCCcccccccccCCCC
Confidence 5 7899999876543
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.09 E-value=0.027 Score=55.97 Aligned_cols=78 Identities=27% Similarity=0.344 Sum_probs=67.1
Q ss_pred CCcEEEeccCCCC-CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 4 ANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~-~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+...++|.+|... ++-+.|..+|-.||.|.. |++++.+. +-|.|++-+..+.+.||..||+..+-|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~r--------vkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVER--------VKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceee--------EEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 4578999999865 455778999999999998 88888763 789999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016532 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
.+|.|.+++...
T Consensus 353 ~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 353 GKLNVCVSKQNF 364 (494)
T ss_pred ceEEEeeccccc
Confidence 999998887543
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.00 E-value=0.037 Score=41.57 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~l 75 (388)
....+|+|.|| .+++.++|+.+|..|-.... .-.|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 3 ~rpeavhirGv-d~lsT~dI~~y~~~y~~~~~-----~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGV-DELSTDDIKAYFSEYFDEEG-----PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcC-CCCCHHHHHHHHHHhcccCC-----CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 34678999999 55888899999999811110 1127777775 3899999999999999754
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.98 E-value=0.0083 Score=60.37 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=58.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eecCce
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK-DFHGNL 84 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~-~i~Gr~ 84 (388)
++||++||.+.++..+|+.+|...- +.-.. -.++. .+||||.+.+...|.+|++.|+++ ++.|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-~~~~g------~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-IPGSG------QFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-CCCCc------ceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 5799999999999999999997541 11110 11221 379999999999999999999987 578999
Q ss_pred EEEEecccCC
Q 016532 85 IGVFIAESRG 94 (388)
Q Consensus 85 I~V~~a~~~~ 94 (388)
+.|..+-++.
T Consensus 68 ~e~~~sv~kk 77 (584)
T KOG2193|consen 68 QEVEHSVPKK 77 (584)
T ss_pred eeccchhhHH
Confidence 9999887654
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.79 E-value=0.0036 Score=67.69 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=71.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
...|||.|+|+..|.++|+.++..+|.+++ +.++..+. |+++|.|||.|.++.++.+++...+...+.-..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~--------~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTS--------LRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccc--------cchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 457999999999999999999999999988 55777764 899999999999999999999888888787778
Q ss_pred EEEEecccCCC
Q 016532 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
+.|..+.+...
T Consensus 807 ~~v~vsnp~~~ 817 (881)
T KOG0128|consen 807 GEVQVSNPERD 817 (881)
T ss_pred ccccccCCccc
Confidence 88888776443
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.78 E-value=0.011 Score=61.88 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=63.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhc-CceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTI-GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH- 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~-G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~- 81 (388)
.++.|||.||---+|.-+|+.+|..- |.|.. +|| |+ .+..|||.|.+.++|.+.+.+||++.+-
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee--------~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE--------FWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHH--------HHH--HH----hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 57899999999999999999999954 55554 433 33 3568999999999999999999999774
Q ss_pred --CceEEEEecccCCC
Q 016532 82 --GNLIGVFIAESRGK 95 (388)
Q Consensus 82 --Gr~I~V~~a~~~~~ 95 (388)
.+.|.|.|......
T Consensus 509 sNPK~L~adf~~~del 524 (718)
T KOG2416|consen 509 SNPKHLIADFVRADEL 524 (718)
T ss_pred CCCceeEeeecchhHH
Confidence 58899998876544
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.41 E-value=0.044 Score=54.70 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=54.5
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
.|-+.+||+++|+.++.++|..--.|.- +...|.++..+ .|++.|.|||.|..+++|+.||... -..|.-+.|.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~----g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~kh-rq~iGqRYIE 236 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTG----GTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKH-RQNIGQRYIE 236 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccC----CccceEEEECC-CCCcccceEEEecCHHHHHHHHHHH-HHHHhHHHHH
Confidence 4557799999999999999974433331 12225444443 5899999999999999999999743 2334445555
Q ss_pred EEecc
Q 016532 87 VFIAE 91 (388)
Q Consensus 87 V~~a~ 91 (388)
|..+.
T Consensus 237 lFRST 241 (508)
T KOG1365|consen 237 LFRST 241 (508)
T ss_pred HHHHh
Confidence 55444
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.31 E-value=0.013 Score=55.58 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHHH-hcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEeccc
Q 016532 20 DMLAEYFG-TIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAES 92 (388)
Q Consensus 20 edL~~~F~-~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~~ 92 (388)
++|...|+ +||.|.. +.|-.+. .-...|-+||.|...++|++|++.||+.-|.|++|+.++..-
T Consensus 83 Ed~f~E~~~kygEiee--------~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEE--------LNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhh--------hhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555555 8999987 4344333 234578899999999999999999999999999999988754
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.28 E-value=0.0014 Score=70.64 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=57.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++||.||++.+.+++|...|..++.+.. |.|...+.++..+|+|||+|..++++.+||.......+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~--------vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEV--------VQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhh--------HHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 57899999999999999999999998887 445556667899999999999999999999955555444
No 132
>PF12871 PRP38_assoc: Pre-mRNA-splicing factor 38-associated hydrophilic C-term; InterPro: IPR024767 This entry represents a hydrophilic domain found mainly at the C terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function of the domain is not known.
Probab=95.13 E-value=0.015 Score=47.60 Aligned_cols=8 Identities=63% Similarity=0.754 Sum_probs=3.2
Q ss_pred cccccccc
Q 016532 379 RGRDRMRY 386 (388)
Q Consensus 379 r~r~r~r~ 386 (388)
|+|+++++
T Consensus 88 R~RdRdr~ 95 (97)
T PF12871_consen 88 RSRDRDRD 95 (97)
T ss_pred cccccccc
Confidence 33344443
No 133
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.68 E-value=0.096 Score=50.69 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecc
Q 016532 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEY-KGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91 (388)
Q Consensus 20 edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~s-rG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~ 91 (388)
.++.....+||.|.. |.|+..+..-.. ---.||+|+..++|.+|+..|||..|.|+.+...|-.
T Consensus 301 de~keEceKyg~V~~--------viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGN--------VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceee--------EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 466778889999987 445544421111 1246999999999999999999999999988877643
No 134
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.64 E-value=0.056 Score=49.10 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=48.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHh-cCceeecCCCCCCeEE-EEecCCCC-CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGT-IGLLKKDKRTGRPKVW-LYRDKTTN-EYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~-~G~i~~~~~tg~p~V~-i~~dk~Tg-~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
...+|.|..||+.+|++++...++. ++....- ..+. .+...... ..-.-|||.|.+.+++...+..++|..|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w-----~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDW-----YYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE--------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccce-----EEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4569999999999999998875554 3333100 0011 01111111 1234699999999999999999999888
Q ss_pred cC-----ceEEEEeccc
Q 016532 81 HG-----NLIGVFIAES 92 (388)
Q Consensus 81 ~G-----r~I~V~~a~~ 92 (388)
.+ ....|++|..
T Consensus 81 ~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 81 VDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp E-TTS-EEEEEEEE-SS
T ss_pred ECCCCCCcceeEEEcch
Confidence 64 3456666655
No 135
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.91 E-value=0.29 Score=37.27 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEE
Q 016532 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGV 87 (388)
Q Consensus 15 ~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V 87 (388)
..++-++|+..|..|.-.. |..++ | || ||.|.+..+|++++...++..+....|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-----------I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-----------IRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcce-----------EEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999998554 55555 2 44 89999999999999999999888877665
No 136
>PF12871 PRP38_assoc: Pre-mRNA-splicing factor 38-associated hydrophilic C-term; InterPro: IPR024767 This entry represents a hydrophilic domain found mainly at the C terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function of the domain is not known.
Probab=93.84 E-value=0.051 Score=44.53 Aligned_cols=6 Identities=33% Similarity=0.590 Sum_probs=2.2
Q ss_pred hhhccc
Q 016532 376 EYERGR 381 (388)
Q Consensus 376 ~r~r~r 381 (388)
++++++
T Consensus 89 ~RdRdr 94 (97)
T PF12871_consen 89 SRDRDR 94 (97)
T ss_pred cccccc
Confidence 333333
No 137
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.71 E-value=0.021 Score=56.03 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=60.8
Q ss_pred CcEEEeccCCCCCCHHHHH---HHHHhcCceeecCCCCCCeEEEEecCCCCC---cccEEEEEeCCHHHHHHHHHHhCCc
Q 016532 5 NGSVYVCNLPHGTDEDMLA---EYFGTIGLLKKDKRTGRPKVWLYRDKTTNE---YKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~---~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~---srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
.+-+||-+|++.+..+.+. ..|.+||.|.. |.+..+..+-. .-.-++|+|...++|..||...++.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~k--------i~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINK--------IVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceE--------EeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 4568899999877665553 67888998877 44444331011 1124899999999999999999999
Q ss_pred eecCceEEEEecccCCC
Q 016532 79 DFHGNLIGVFIAESRGK 95 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~ 95 (388)
.+.++.|++.+...+.-
T Consensus 149 ~~dg~~lka~~gttkyc 165 (327)
T KOG2068|consen 149 VDDGRALKASLGTTKYC 165 (327)
T ss_pred HhhhhhhHHhhCCCcch
Confidence 99999888888776543
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.51 E-value=0.091 Score=49.94 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=53.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln 76 (388)
..|||.||+..++-+.|.+.|..||.|... |.++-+ -+++.+-.+|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~a-------v~~vD~--r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERA-------VAKVDD--RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchh-------eeeecc--cccccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999999874 434433 37888899999999999999998764
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=0.097 Score=54.52 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=43.1
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----CceEEEEecccCCC
Q 016532 43 VWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH----GNLIGVFIAESRGK 95 (388)
Q Consensus 43 V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~----Gr~I~V~~a~~~~~ 95 (388)
+.++.|-.+....|||||.|.+++++..+++++||+.+. .+...|.||.-+.+
T Consensus 419 lYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 419 LYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred EEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 567777777888999999999999999999999999765 35667777765544
No 140
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.37 E-value=0.5 Score=39.66 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=46.5
Q ss_pred cEEEeccCC-CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 6 GSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 6 ~tlfV~nLp-~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+|.|--+| ..++.++|..+.+.+-.... .++|+++.. ..+-.+.|.|.+.+.|...+..+||+.|.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~-------~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIE-------HIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEE-------EEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444444 45555566655555544333 278888753 356678999999999999999999998763
No 141
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.22 E-value=0.26 Score=39.22 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=40.7
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
.+||. .|...-..||.++|+.||.|. |..+-+. -|||.+...+.|..++..+.-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 44555 999999999999999999997 4455543 599999999999999987763
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.93 E-value=0.071 Score=56.88 Aligned_cols=78 Identities=23% Similarity=0.133 Sum_probs=59.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
...|||..||..|++.++..+|...-.|+. . |.|..-+ |++.++.|||+|..++++..|+..-.-..+..+.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved-~------I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVED-F------IELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhh-e------eEeccCC-cccccchhhheeccccccchhhhcccccccCceE
Confidence 468999999999999999999987665553 1 5555544 5778899999999988888887655555555677
Q ss_pred EEEEec
Q 016532 85 IGVFIA 90 (388)
Q Consensus 85 I~V~~a 90 (388)
|.|...
T Consensus 506 irv~si 511 (944)
T KOG4307|consen 506 IRVDSI 511 (944)
T ss_pred EEeech
Confidence 777653
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.62 E-value=0.031 Score=61.04 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=63.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+.|||++||+..+++.+|+..|..+|.|.... |+...- +.-.-|+||.|.+...+..|...+.+..|...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VD------iKtP~~---~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVD------IKTPHI---KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccc------cccCCC---CcccchhhhhhhccccCcccchhhcCCccccC
Confidence 578999999999999999999999999998843 333322 23346999999999999999998988888766
Q ss_pred eEEEEecc
Q 016532 84 LIGVFIAE 91 (388)
Q Consensus 84 ~I~V~~a~ 91 (388)
.+.+-+..
T Consensus 442 ~~r~glG~ 449 (975)
T KOG0112|consen 442 THRIGLGQ 449 (975)
T ss_pred cccccccc
Confidence 66666654
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=92.19 E-value=0.081 Score=56.57 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=6.2
Q ss_pred ecCceEEEEecc
Q 016532 80 FHGNLIGVFIAE 91 (388)
Q Consensus 80 i~Gr~I~V~~a~ 91 (388)
|.|.+|.++...
T Consensus 633 ldgipm~~e~~s 644 (877)
T KOG0151|consen 633 LDGIPMMVETKS 644 (877)
T ss_pred ccCceeeeeecc
Confidence 445555555443
No 145
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.18 E-value=0.82 Score=35.25 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=41.0
Q ss_pred EEEec-cCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016532 7 SVYVC-NLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 7 tlfV~-nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
+|||. +--..++..+|..+|...+.|.... |--+.-. ..|+||+.... .|+.+|..|++..+.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~------IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRD------IGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGG------EEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHh------EEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeE
Confidence 45553 3346788899999998877676533 3222222 24899998754 7888999999999999999
Q ss_pred EEEec
Q 016532 86 GVFIA 90 (388)
Q Consensus 86 ~V~~a 90 (388)
.|+.|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99875
No 146
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.44 E-value=0.12 Score=54.92 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+||...+.++-+..++..+|.|.+ +.+.+ |+|..|..+.-+..|+..+.-..+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s----------~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPS----------WKRDK-------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchh----------hhhhh-------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 46689999999999999999999999999987 22322 99999999999999999999888888
Q ss_pred ceEEEEec
Q 016532 83 NLIGVFIA 90 (388)
Q Consensus 83 r~I~V~~a 90 (388)
..+.+...
T Consensus 101 ~kl~~~~d 108 (668)
T KOG2253|consen 101 QKLIENVD 108 (668)
T ss_pred chhhccch
Confidence 87777664
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.22 E-value=0.17 Score=55.14 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--Cce
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH--GNL 84 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~--Gr~ 84 (388)
+.++.|++...+-.-|..+|.+||.|.+ +|.+++- ..|.|+|.+.+.|..|+.+|+|+++. |-+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s--------~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVAS--------AWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhh--------heecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 4456677778888999999999999998 7777765 47999999999999999999998754 788
Q ss_pred EEEEecccCCCCC
Q 016532 85 IGVFIAESRGKDD 97 (388)
Q Consensus 85 I~V~~a~~~~~~~ 97 (388)
.+|.+|+.-+...
T Consensus 366 s~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 366 SRVSFAKTLPMYE 378 (1007)
T ss_pred eeEEecccccccc
Confidence 9999998876654
No 148
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.07 E-value=0.78 Score=40.20 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCCcEEEeccCCCCCCH-H---HHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016532 2 TMANGSVYVCNLPHGTDE-D---MLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~te-e---dL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
.++=.||.|.=|..++.. + .|...++.||.|.+ |.+. .+.-|.|+|.+..+|=.|+.+++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~S--------VT~c-------GrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQS--------VTLC-------GRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcce--------eeec-------CCceEEEEehhhHHHHHHHHhhcC
Confidence 345578888876655542 3 44566788999988 4332 245799999999999999999886
Q ss_pred ceecCceEEEEec
Q 016532 78 KDFHGNLIGVFIA 90 (388)
Q Consensus 78 ~~i~Gr~I~V~~a 90 (388)
..-|..+...+-
T Consensus 148 -~~pgtm~qCsWq 159 (166)
T PF15023_consen 148 -RAPGTMFQCSWQ 159 (166)
T ss_pred -CCCCceEEeecc
Confidence 355666776654
No 149
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.47 E-value=0.17 Score=51.93 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCCCcEEEeccCCCCCC-HHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 2 TMANGSVYVCNLPHGTD-EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~t-eedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
..++..|-|.-+|+... .++|...|.+||.|.. |.|-.. --.|.|+|.+..+|-.|+. .++..|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n--------~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avl 433 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIEN--------IQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVL 433 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCcccc--------ccccCc------hhhheeeeeccccccchhc-ccccee
Confidence 34455565666665554 5789999999999987 434322 3469999999999977776 889999
Q ss_pred cCceEEEEecccCC
Q 016532 81 HGNLIGVFIAESRG 94 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~ 94 (388)
+++.|+|.+-.+..
T Consensus 434 nnr~iKl~whnps~ 447 (526)
T KOG2135|consen 434 NNRFIKLFWHNPSP 447 (526)
T ss_pred cCceeEEEEecCCc
Confidence 99999999987743
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.22 E-value=0.82 Score=46.83 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=56.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016532 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+++.|+|-.+|..+|--||..|...|-.... .|+|++|.. ..+-.++|.|.+.++|...+..+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~-------~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQIS-------DIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhh-------eeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3678999999999999999999887644333 288999653 334468999999999999999999998874
No 151
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.25 E-value=1.1 Score=41.02 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceecCceEEEEecccCC
Q 016532 18 DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN--NKDFHGNLIGVFIAESRG 94 (388)
Q Consensus 18 teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln--g~~i~Gr~I~V~~a~~~~ 94 (388)
....|+.+|..|+.+.. +.++. +-.-..|.|.+.++|+.|...|+ +..|.+..|.|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~--------~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQ--------FSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-E--------EEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceE--------EEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35788999999998865 32222 23568999999999999999999 999999999999986543
No 152
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=89.23 E-value=3.6 Score=41.02 Aligned_cols=12 Identities=25% Similarity=0.280 Sum_probs=6.0
Q ss_pred CCCCCccccCCC
Q 016532 137 DAVGKTWQQDGD 148 (388)
Q Consensus 137 ~g~g~~~~r~gD 148 (388)
.+++++|.+++-
T Consensus 378 ~GGGggyqqp~~ 389 (465)
T KOG3973|consen 378 RGGGGGYQQPQQ 389 (465)
T ss_pred CCCCCCCcCchh
Confidence 344556665543
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.84 E-value=0.36 Score=47.25 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=65.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..++||++|...+.+.++..+|..+|.+..+ .+........+++++.|.|...+.+..|+.......+.+..
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~--------~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDA--------RSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccc--------hhhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 5689999999999999899999999977763 35555566789999999999999999999866555666666
Q ss_pred EEEEecccCC
Q 016532 85 IGVFIAESRG 94 (388)
Q Consensus 85 I~V~~a~~~~ 94 (388)
+...+.....
T Consensus 160 ~~~dl~~~~~ 169 (285)
T KOG4210|consen 160 GEKDLNTRRG 169 (285)
T ss_pred ccCccccccc
Confidence 6666655443
No 154
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.67 E-value=2.2 Score=41.72 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=52.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc-
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN- 83 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr- 83 (388)
.+=|-|-++|+..+ ..|..+|++||.|.. .+.- ..-.|-+|-|.+..+|++||. .||..|.+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvk----------hv~~----~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVK----------HVTP----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeee----------eecC----CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 34466667877654 456678999999976 3222 223589999999999999998 889988874
Q ss_pred eEEEEecccC
Q 016532 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|-|.....+
T Consensus 261 miGVkpCtDk 270 (350)
T KOG4285|consen 261 MIGVKPCTDK 270 (350)
T ss_pred EEeeeecCCH
Confidence 4556554433
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=86.04 E-value=0.27 Score=49.37 Aligned_cols=71 Identities=14% Similarity=-0.067 Sum_probs=39.5
Q ss_pred CcEEEeccCCCCCCH-HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016532 5 NGSVYVCNLPHGTDE-DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 5 ~~tlfV~nLp~~~te-edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
..++||..|...++. .++...|-..+.+.. |..+.+. -.+--|||+.|.+...+..+|. .+|+++...
T Consensus 52 sRtcyVkf~d~~sv~vaQhLtntvfvdrali--------v~p~~~~--~~p~r~af~~l~~~navprll~-pdg~Lp~~~ 120 (479)
T KOG4676|consen 52 SRTCYVKFLDSQSVTVAQHLTNTVFVDRALI--------VRPYGDE--VIPDRFAFVELADQNAVPRLLP-PDGVLPGDR 120 (479)
T ss_pred eeeEEEeccCCcceeHHhhhccceeeeeeEE--------EEecCCC--CCccHHHHHhcCcccccccccC-CCCccCCCC
Confidence 468999999765543 333333333333322 2122222 2444578898888777776665 566655555
Q ss_pred eEE
Q 016532 84 LIG 86 (388)
Q Consensus 84 ~I~ 86 (388)
+|.
T Consensus 121 ~lt 123 (479)
T KOG4676|consen 121 PLT 123 (479)
T ss_pred ccc
Confidence 553
No 156
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.45 E-value=1.2 Score=46.86 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=41.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHh--cCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGT--IGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~--~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln 76 (388)
..|+|.-||..+-+++|+.+|.. +-.+.+ +.+-.+- + =||+|++..+|++|++.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~is--------cefa~N~------n-WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVIS--------CEFAHND------N-WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCcee--------eeeeecC------c-eEEEeecchhHHHHHHHHH
Confidence 47888999999999999999975 444443 2232221 2 3899999999999987653
No 157
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.31 E-value=10 Score=41.27 Aligned_cols=73 Identities=7% Similarity=0.098 Sum_probs=51.2
Q ss_pred EEec-cCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016532 8 VYVC-NLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 8 lfV~-nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
+||. +-...++..+|..++..-+.|.... .=.|.|+. .|.||+... ..|...+..|+...+.|+.|.
T Consensus 489 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~---ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 489 YRIEVGRDDGVEVRHIVGAIANEGDISSRY---IGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred EEEecccccCCCHHHHHHHHHhhcCCChhh---CCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 4443 3347788889988888766665421 11244432 478999875 457888889999999999999
Q ss_pred EEeccc
Q 016532 87 VFIAES 92 (388)
Q Consensus 87 V~~a~~ 92 (388)
|+.+..
T Consensus 557 ~~~~~~ 562 (629)
T PRK11634 557 MQLLGD 562 (629)
T ss_pred EEECCC
Confidence 998853
No 158
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=83.91 E-value=0.63 Score=45.77 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=8.8
Q ss_pred cccccccccCCCCC
Q 016532 226 WAKRTKCNICNTNK 239 (388)
Q Consensus 226 ~~~~~~c~~c~~~~ 239 (388)
-.+-.+|-+|++=.
T Consensus 183 ~qkl~VCeVCGa~L 196 (319)
T KOG0796|consen 183 QQKLRVCEVCGAFL 196 (319)
T ss_pred hhhhhHHHhhhHHH
Confidence 34566777777644
No 159
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=82.96 E-value=1.1 Score=48.55 Aligned_cols=50 Identities=28% Similarity=0.700 Sum_probs=42.0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccc
Q 016532 150 MCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNINWAKR 229 (388)
Q Consensus 150 ~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~n~~~~ 229 (388)
+|+ .|+..|-..-..|.+|+++-.. + .|+.|+..|...-
T Consensus 3 ~Cp--~Cg~~n~~~akFC~~CG~~l~~-----------------------------------~----~Cp~CG~~~~~~~ 41 (645)
T PRK14559 3 ICP--QCQFENPNNNRFCQKCGTSLTH-----------------------------------K----PCPQCGTEVPVDE 41 (645)
T ss_pred cCC--CCCCcCCCCCccccccCCCCCC-----------------------------------C----cCCCCCCCCCccc
Confidence 688 8999998888899999876421 0 4999999999999
Q ss_pred cccccCCCCCC
Q 016532 230 TKCNICNTNKP 240 (388)
Q Consensus 230 ~~c~~c~~~~~ 240 (388)
..|..|+++-.
T Consensus 42 ~fC~~CG~~~~ 52 (645)
T PRK14559 42 AHCPNCGAETG 52 (645)
T ss_pred ccccccCCccc
Confidence 99999999754
No 160
>PF12773 DZR: Double zinc ribbon
Probab=82.41 E-value=1.7 Score=30.63 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=37.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccccccccccc
Q 016532 155 SCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNINWAKRTKCNI 234 (388)
Q Consensus 155 ~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~n~~~~~~c~~ 234 (388)
.|+..+-..-..|..|+++-+. .....+.|+.|+..|-.....|..
T Consensus 3 ~Cg~~~~~~~~fC~~CG~~l~~----------------------------------~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 3 HCGTPNPDDAKFCPHCGTPLPP----------------------------------PDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred CcCCcCCccccCChhhcCChhh----------------------------------ccCCCCCCcCCcCCCcCCcCccCc
Confidence 6888887777888888887651 123458999999999999999988
Q ss_pred CC
Q 016532 235 CN 236 (388)
Q Consensus 235 c~ 236 (388)
|+
T Consensus 49 CG 50 (50)
T PF12773_consen 49 CG 50 (50)
T ss_pred cc
Confidence 85
No 161
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=81.79 E-value=0.89 Score=27.91 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.2
Q ss_pred ccCCCCCccccccccccccCCCC
Q 016532 216 WSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 216 w~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
+.|+.|+..|-+--..|..|+++
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 68999999999999999999986
No 162
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=81.15 E-value=0.94 Score=29.43 Aligned_cols=25 Identities=32% Similarity=0.817 Sum_probs=18.6
Q ss_pred ccCCCCCcccccc--ccccccCCCCCC
Q 016532 216 WSCPMCGNINWAK--RTKCNICNTNKP 240 (388)
Q Consensus 216 w~c~~c~~~n~~~--~~~c~~c~~~~~ 240 (388)
|.|..|+++-... -..|-.|++++.
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCCcHH
Confidence 8899999884333 558999988763
No 163
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=81.11 E-value=0.93 Score=49.56 Aligned_cols=7 Identities=0% Similarity=0.045 Sum_probs=2.9
Q ss_pred EEEEEeC
Q 016532 57 DATVTYE 63 (388)
Q Consensus 57 ~aFVeF~ 63 (388)
|+.+...
T Consensus 61 y~~t~~~ 67 (1194)
T KOG4246|consen 61 YGSTSLS 67 (1194)
T ss_pred ccccchh
Confidence 4444443
No 164
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=80.87 E-value=0.93 Score=27.13 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.0
Q ss_pred cCCCCCccccccccccccCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
.|+.|++.+-+-...|..|+++
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 4899999999999999999986
No 165
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=80.01 E-value=1.1 Score=29.40 Aligned_cols=26 Identities=42% Similarity=1.022 Sum_probs=20.1
Q ss_pred CccCCCCCccccc--cccccccCCCCCC
Q 016532 215 DWSCPMCGNINWA--KRTKCNICNTNKP 240 (388)
Q Consensus 215 dw~c~~c~~~n~~--~~~~c~~c~~~~~ 240 (388)
-|.|..||++--. .-..|-.|++++.
T Consensus 2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~~ 29 (34)
T cd00729 2 VWVCPVCGYIHEGEEAPEKCPICGAPKE 29 (34)
T ss_pred eEECCCCCCEeECCcCCCcCcCCCCchH
Confidence 4999999999433 2469999999753
No 166
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=76.71 E-value=2.2 Score=49.06 Aligned_cols=54 Identities=30% Similarity=0.684 Sum_probs=41.1
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccc
Q 016532 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNINW 226 (388)
Q Consensus 147 gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~n~ 226 (388)
+...|+ +|+...+.. .|..|+.+-.. .+.|+.|+...-
T Consensus 666 ~~rkCP--kCG~~t~~~--fCP~CGs~te~--------------------------------------vy~CPsCGaev~ 703 (1337)
T PRK14714 666 GRRRCP--SCGTETYEN--RCPDCGTHTEP--------------------------------------VYVCPDCGAEVP 703 (1337)
T ss_pred EEEECC--CCCCccccc--cCcccCCcCCC--------------------------------------ceeCccCCCccC
Confidence 458999 899988775 99999987421 368999999654
Q ss_pred cc---ccccccCCCCCCCC
Q 016532 227 AK---RTKCNICNTNKPGH 242 (388)
Q Consensus 227 ~~---~~~c~~c~~~~~~~ 242 (388)
.- .+.|-.|++|.-..
T Consensus 704 ~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 704 PDESGRVECPRCDVELTPY 722 (1337)
T ss_pred CCccccccCCCCCCccccc
Confidence 33 56899999886653
No 167
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=73.13 E-value=1.5 Score=43.09 Aligned_cols=8 Identities=50% Similarity=1.311 Sum_probs=4.0
Q ss_pred cccccCCC
Q 016532 165 GVCNRCGT 172 (388)
Q Consensus 165 ~~C~rC~~ 172 (388)
..|.-|++
T Consensus 187 ~VCeVCGa 194 (319)
T KOG0796|consen 187 RVCEVCGA 194 (319)
T ss_pred hHHHhhhH
Confidence 34555554
No 168
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=73.05 E-value=1.6 Score=32.87 Aligned_cols=14 Identities=50% Similarity=1.286 Sum_probs=11.7
Q ss_pred CCccCCCCCccccc
Q 016532 214 NDWSCPMCGNINWA 227 (388)
Q Consensus 214 ~dw~c~~c~~~n~~ 227 (388)
+-|+|++|+|.||.
T Consensus 3 ~~~kCpKCgn~~~~ 16 (68)
T COG3478 3 NAFKCPKCGNTNYE 16 (68)
T ss_pred ccccCCCcCCcchh
Confidence 45889999999964
No 169
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=68.28 E-value=4 Score=39.89 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 016532 22 LAEYFGT 28 (388)
Q Consensus 22 L~~~F~~ 28 (388)
|..+|..
T Consensus 9 llaLF~p 15 (335)
T KOG0113|consen 9 LLALFAP 15 (335)
T ss_pred HHHhcCC
Confidence 3344443
No 170
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=67.63 E-value=2.1 Score=38.84 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=27.7
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCCC
Q 016532 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~~~~c~~c~~~~~~~ 242 (388)
-..|-|.|..|-..|-|---.|++|..-|...
T Consensus 20 ~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTS 51 (228)
T KOG4477|consen 20 DDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTS 51 (228)
T ss_pred cccCceeeeeeeecchhhhhheeeeccccccc
Confidence 35678999999999999999999999877643
No 171
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.48 E-value=25 Score=37.54 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCcEEEeccCCCC-CCHHHHHHHHHhc----CceeecCCCCCCeEEEEecC----------CCCC---------------
Q 016532 4 ANGSVYVCNLPHG-TDEDMLAEYFGTI----GLLKKDKRTGRPKVWLYRDK----------TTNE--------------- 53 (388)
Q Consensus 4 ~~~tlfV~nLp~~-~teedL~~~F~~~----G~i~~~~~tg~p~V~i~~dk----------~Tg~--------------- 53 (388)
.+..|-|.||.+. +...+|..+|..| |.|.+ |.|+... .+|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilS--------V~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~ 244 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILS--------VKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESE 244 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeE--------EEechhhhhHHHhhhhcccCChhhhccccccCcccc
Confidence 4678999999974 5678999999887 46665 3333211 1111
Q ss_pred ---------------------c-ccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEe
Q 016532 54 ---------------------Y-KGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFI 89 (388)
Q Consensus 54 ---------------------s-rG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~ 89 (388)
. --||.|+|.+.+.|...+..++|..|...-+.+.+
T Consensus 245 sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 245 SDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred cchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 1 23899999999999999999999999865444444
No 172
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.46 E-value=11 Score=38.28 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=45.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 016532 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEW 74 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ 74 (388)
..|-|.++|...-.+||..+|..|+.--. +|+++-+. .||..|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgf-------dIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGF-------DIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCc-------eeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 56788999999999999999999976543 26666654 699999999999999873
No 173
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=64.42 E-value=0.42 Score=48.53 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=63.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
+++|-|.|+|+...++.|..++.+||.+..+. .+..+.+| ...-|+|...+.+..||..|++..|+...
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~e-------qvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCE-------QVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhh-------hhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 45678899999999999999999999998853 24444443 23457899999999999999999999999
Q ss_pred EEEEecccC
Q 016532 85 IGVFIAESR 93 (388)
Q Consensus 85 I~V~~a~~~ 93 (388)
++|.|-...
T Consensus 149 ~k~~YiPde 157 (584)
T KOG2193|consen 149 LKVGYIPDE 157 (584)
T ss_pred hhcccCchh
Confidence 999886443
No 174
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.77 E-value=7.4 Score=39.45 Aligned_cols=21 Identities=5% Similarity=0.306 Sum_probs=18.2
Q ss_pred eccCCCCCCHHHHHHHHHhcC
Q 016532 10 VCNLPHGTDEDMLAEYFGTIG 30 (388)
Q Consensus 10 V~nLp~~~teedL~~~F~~~G 30 (388)
|-+|+.++++++|+..|.++-
T Consensus 9 iLGV~k~As~~EIKkAYRkLA 29 (371)
T COG0484 9 ILGVSKDASEEEIKKAYRKLA 29 (371)
T ss_pred hcCCCCCCCHHHHHHHHHHHH
Confidence 668999999999999988753
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=62.06 E-value=1 Score=44.68 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=10.6
Q ss_pred EEeCCHHHHHHHHHH
Q 016532 60 VTYEDPHAALAAVEW 74 (388)
Q Consensus 60 VeF~s~e~A~~Ai~~ 74 (388)
..|.+-++..+||..
T Consensus 89 ~W~TTD~DL~~A~~S 103 (498)
T KOG4849|consen 89 LWYTTDADLLKALQS 103 (498)
T ss_pred eEEeccHHHHHHHHh
Confidence 357777888888764
No 176
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.13 E-value=10 Score=32.01 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=30.9
Q ss_pred EEEeccCCCC---------CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 016532 7 SVYVCNLPHG---------TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVE 73 (388)
Q Consensus 7 tlfV~nLp~~---------~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s-~e~A~~Ai~ 73 (388)
+++|-|++.. ++.++|.+.|..|..++ |+.+.++. -+.++++|.|.+ -.-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k---------v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK---------VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE---------EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce---------eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4667777543 35578999999998776 45566663 567999999974 444455554
No 177
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=59.87 E-value=5.9 Score=29.46 Aligned_cols=26 Identities=27% Similarity=0.700 Sum_probs=22.3
Q ss_pred CccCCCCCccc-----cccccccccCCCCCC
Q 016532 215 DWSCPMCGNIN-----WAKRTKCNICNTNKP 240 (388)
Q Consensus 215 dw~c~~c~~~n-----~~~~~~c~~c~~~~~ 240 (388)
+..|+.|.|.+ -+..+.|..|++...
T Consensus 11 ~VkCp~C~n~q~vFsha~t~V~C~~Cg~~L~ 41 (59)
T PRK00415 11 KVKCPDCGNEQVVFSHASTVVRCLVCGKTLA 41 (59)
T ss_pred EEECCCCCCeEEEEecCCcEEECcccCCCcc
Confidence 46899999999 677889999998764
No 178
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=57.28 E-value=14 Score=36.13 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=22.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCc-eecCceEEEEecccC
Q 016532 56 GDATVTYEDPHAALAAVEWFNNK-DFHGNLIGVFIAESR 93 (388)
Q Consensus 56 G~aFVeF~s~e~A~~Ai~~lng~-~i~Gr~I~V~~a~~~ 93 (388)
+|+...|.-+++.+++|..-+.. .+.+-.+.|+++..+
T Consensus 214 sfqvaSisypde~Q~lin~r~s~~M~gD~~rf~Q~s~a~ 252 (345)
T COG4260 214 SFQVASISYPDESQALINMRNSGAMLGDPQRFVQGSVAR 252 (345)
T ss_pred eEEEEEecCcHHHHHHHHhhcccccccCchhhhhhhhhc
Confidence 35666667778888888754433 344444555555443
No 179
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=57.17 E-value=5.6 Score=35.83 Aligned_cols=26 Identities=35% Similarity=0.901 Sum_probs=20.9
Q ss_pred CccCCCCCccccc-cccccccCCCCCC
Q 016532 215 DWSCPMCGNINWA-KRTKCNICNTNKP 240 (388)
Q Consensus 215 dw~c~~c~~~n~~-~~~~c~~c~~~~~ 240 (388)
.|.|+.||++--- --.+|..|++||-
T Consensus 134 ~~vC~vCGy~~~ge~P~~CPiCga~k~ 160 (166)
T COG1592 134 VWVCPVCGYTHEGEAPEVCPICGAPKE 160 (166)
T ss_pred EEEcCCCCCcccCCCCCcCCCCCChHH
Confidence 8999999997543 3457999999874
No 180
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=56.75 E-value=11 Score=34.48 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=51.9
Q ss_pred CcEEEeccCCCCCCHH-----HHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016532 5 NGSVYVCNLPHGTDED-----MLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 5 ~~tlfV~nLp~~~tee-----dL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
.++|+++.|+..+-.+ ..+.+|.+|-.... ..+++ +..+.-|.|.+++.|..|...++...
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~--------fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~ 75 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDAT--------FQLLR------SFRRVRINFSNPEAAADARIKLHSTS 75 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchH--------HHHHH------hhceeEEeccChhHHHHHHHHhhhcc
Confidence 3568888888655432 22345555444332 22322 34567789999999999999999999
Q ss_pred ecCc-eEEEEecccCC
Q 016532 80 FHGN-LIGVFIAESRG 94 (388)
Q Consensus 80 i~Gr-~I~V~~a~~~~ 94 (388)
|.+. .++.-++++..
T Consensus 76 f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 76 FNGKNELKLYFAQPGH 91 (193)
T ss_pred cCCCceEEEEEccCCC
Confidence 9987 78887777654
No 181
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=56.37 E-value=5.5 Score=39.59 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.8
Q ss_pred CHHHHHHHHHhcCce
Q 016532 18 DEDMLAEYFGTIGLL 32 (388)
Q Consensus 18 teedL~~~F~~~G~i 32 (388)
+|..|...|-+-+.|
T Consensus 100 NE~kLn~AF~~s~~V 114 (441)
T KOG1902|consen 100 NEKKLNLAFRSSRSV 114 (441)
T ss_pred cHHHHHHHHhhcCcE
Confidence 455666666665544
No 182
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=53.61 E-value=22 Score=34.65 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=37.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCH
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~ 65 (388)
.+-|||+|||.++.-.||+..+.+.+.+.. .|.+. -+.+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm---------~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPM---------SISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCce---------eEeee----cCCcceeEecCCc
Confidence 356999999999999999999998887653 34443 2567899999653
No 183
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=49.56 E-value=7.6 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.908 Sum_probs=13.9
Q ss_pred cCCCCCccccccccccccCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
.|..|+.+.|-.+..|..|.+.
T Consensus 13 rC~~Cg~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 13 RCRDCGRVQFPPRPVCPHCGSD 34 (37)
T ss_dssp E-TTT--EEES--SEETTTT--
T ss_pred EcCCCCCEecCCCcCCCCcCcc
Confidence 5899999999999999999753
No 184
>PHA00626 hypothetical protein
Probab=47.64 E-value=11 Score=27.71 Aligned_cols=12 Identities=67% Similarity=1.165 Sum_probs=10.1
Q ss_pred cCCCCCcccccc
Q 016532 217 SCPMCGNINWAK 228 (388)
Q Consensus 217 ~c~~c~~~n~~~ 228 (388)
.||.|+..|.++
T Consensus 2 ~CP~CGS~~Ivr 13 (59)
T PHA00626 2 SCPKCGSGNIAK 13 (59)
T ss_pred CCCCCCCceeee
Confidence 599999988775
No 185
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=46.01 E-value=13 Score=26.67 Aligned_cols=11 Identities=64% Similarity=2.002 Sum_probs=8.3
Q ss_pred CCCccCCCCCc
Q 016532 213 PNDWSCPMCGN 223 (388)
Q Consensus 213 ~~dw~c~~c~~ 223 (388)
+.+|.|+.|+.
T Consensus 32 p~~w~CP~C~a 42 (50)
T cd00730 32 PDDWVCPVCGA 42 (50)
T ss_pred CCCCCCCCCCC
Confidence 66888887764
No 186
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=45.52 E-value=11 Score=37.20 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCCCccCCCCCccccccccccccCCCC
Q 016532 212 GPNDWSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 212 ~~~dw~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
..-+|.|+.|+.+--.|.-.|-.|++.
T Consensus 351 ~~p~~~c~~cg~~~~~~~~~c~~c~~~ 377 (389)
T PRK11788 351 RKPRYRCRNCGFTARTLYWHCPSCKAW 377 (389)
T ss_pred CCCCEECCCCCCCCccceeECcCCCCc
Confidence 355799999999999999999999974
No 187
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=44.78 E-value=23 Score=31.99 Aligned_cols=63 Identities=29% Similarity=0.303 Sum_probs=41.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
.....+++.+++..++..++..+|..++.+.. +.+...........+.++.+.....+...+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVR--------ASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccceeeccccccccchhHHHHhcccccccee--------eeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 45678999999999999999999999999865 3344433323333344444444444444433
No 188
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=42.88 E-value=13 Score=32.34 Aligned_cols=22 Identities=27% Similarity=0.893 Sum_probs=21.2
Q ss_pred cCCCCCccccccccccccCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
.|.+||++=|-.|..|-.|+++
T Consensus 31 kC~~CG~v~~PPr~~Cp~C~~~ 52 (140)
T COG1545 31 KCKKCGRVYFPPRAYCPKCGSE 52 (140)
T ss_pred EcCCCCeEEcCCcccCCCCCCC
Confidence 6999999999999999999997
No 189
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=41.51 E-value=33 Score=34.19 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=5.1
Q ss_pred EEEeCCHHHHHHH
Q 016532 59 TVTYEDPHAALAA 71 (388)
Q Consensus 59 FVeF~s~e~A~~A 71 (388)
||.|.-...|+++
T Consensus 60 ~v~~~~e~vv~AC 72 (367)
T KOG0835|consen 60 FVRHDFEIVVMAC 72 (367)
T ss_pred cccccHHHHHHHH
Confidence 4444333333333
No 190
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=70 Score=32.11 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=20.0
Q ss_pred CcEEE-eccCCCCCCHHHHHHHHHhc
Q 016532 5 NGSVY-VCNLPHGTDEDMLAEYFGTI 29 (388)
Q Consensus 5 ~~tlf-V~nLp~~~teedL~~~F~~~ 29 (388)
++.+| |-+|++++|+++|+..+.+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkl 28 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKL 28 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHH
Confidence 45565 77899999999999887764
No 191
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.29 E-value=25 Score=34.16 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=33.1
Q ss_pred CcEEEeccCCC------------CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCccc
Q 016532 5 NGSVYVCNLPH------------GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKG 56 (388)
Q Consensus 5 ~~tlfV~nLp~------------~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG 56 (388)
+.|||+.+||- -.++.-|...|..||.|..+. .|.+--++..-|++..|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vd---ipicdplr~~mn~kisg 209 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVD---IPICDPLREEMNGKISG 209 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecC---CcccchhHHHhcCcccc
Confidence 57899999983 145678999999999998754 34443344444555433
No 192
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=38.09 E-value=17 Score=25.77 Aligned_cols=12 Identities=58% Similarity=1.763 Sum_probs=7.4
Q ss_pred CCCccCCCCCcc
Q 016532 213 PNDWSCPMCGNI 224 (388)
Q Consensus 213 ~~dw~c~~c~~~ 224 (388)
+.||.|+.|+..
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 789999998764
No 193
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.88 E-value=33 Score=34.73 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=45.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCC-C---CCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT-T---NEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~-T---g~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
-..|.|..||+..++.+|.+.+..|-.-.. +...-+. . ..-.+.|||.|..+++.......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~---------~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVN---------WEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccc---------hheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346889999999999988876665322211 1111100 0 11246899999999998888888888765
Q ss_pred c
Q 016532 81 H 81 (388)
Q Consensus 81 ~ 81 (388)
.
T Consensus 78 l 78 (376)
T KOG1295|consen 78 L 78 (376)
T ss_pred e
Confidence 4
No 194
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.46 E-value=17 Score=37.46 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=22.3
Q ss_pred CCccCCCCCccccccccccccCCC
Q 016532 214 NDWSCPMCGNINWAKRTKCNICNT 237 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~~~~c~~c~~ 237 (388)
--|.|..|+++-.-|.-.|..|++
T Consensus 6 t~f~C~~CG~~s~KW~GkCp~Cg~ 29 (456)
T COG1066 6 TAFVCQECGYVSPKWLGKCPACGA 29 (456)
T ss_pred cEEEcccCCCCCccccccCCCCCC
Confidence 359999999999999999999996
No 195
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.24 E-value=36 Score=32.38 Aligned_cols=33 Identities=15% Similarity=0.445 Sum_probs=29.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceee
Q 016532 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKK 34 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~ 34 (388)
..+..+||+-|||..+|++.|..+.+++|.+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 456789999999999999999999999997764
No 196
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.58 E-value=56 Score=25.11 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEeccc
Q 016532 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAES 92 (388)
Q Consensus 20 edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~~ 92 (388)
++|++.|..+|.-... |..+..+.+..+...-||+.....+... .|+=+.|.++.|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~-------i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLF-------IHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeE-------EEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 4688888888855432 6777888877788888998876554444 3445567788888876544
No 197
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=34.28 E-value=65 Score=24.47 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecccC
Q 016532 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93 (388)
Q Consensus 20 edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~~~ 93 (388)
++|.+.|...|.-... |.-+..+.+..+...-||+++...+...+ |+=+.|.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~-------i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRN-------IHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEE-------EEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 4677888877755431 66666776777878889998766553333 4445577888888766543
No 198
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=33.61 E-value=20 Score=32.66 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=28.2
Q ss_pred ccCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 016532 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~ 178 (388)
...|-|.|. .|-+.|.|--..||.|...+..+-
T Consensus 20 ~Deg~WdCs--vCTFrNsAeAfkC~vCdvRKGTST 52 (228)
T KOG4477|consen 20 DDEGKWDCS--VCTFRNSAEAFKCFVCDVRKGTST 52 (228)
T ss_pred cccCceeee--eeeecchhhhhheeeecccccccc
Confidence 356899999 799999999999999998877653
No 199
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.38 E-value=48 Score=37.88 Aligned_cols=54 Identities=30% Similarity=0.658 Sum_probs=40.4
Q ss_pred ccCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCc
Q 016532 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGN 223 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~ 223 (388)
-..+.-.|+ .|+...+. ..|-.|+..-. .-|.|+.|+.
T Consensus 622 VEVg~RfCp--sCG~~t~~--frCP~CG~~Te--------------------------------------~i~fCP~CG~ 659 (1121)
T PRK04023 622 VEIGRRKCP--SCGKETFY--RRCPFCGTHTE--------------------------------------PVYRCPRCGI 659 (1121)
T ss_pred ecccCccCC--CCCCcCCc--ccCCCCCCCCC--------------------------------------cceeCccccC
Confidence 356788999 89998644 58999987721 2478999988
Q ss_pred cccccccccccCCCCCCC
Q 016532 224 INWAKRTKCNICNTNKPG 241 (388)
Q Consensus 224 ~n~~~~~~c~~c~~~~~~ 241 (388)
..- ..+|..|++.-..
T Consensus 660 ~~~--~y~CPKCG~El~~ 675 (1121)
T PRK04023 660 EVE--EDECEKCGREPTP 675 (1121)
T ss_pred cCC--CCcCCCCCCCCCc
Confidence 754 3679999987654
No 200
>PRK11901 hypothetical protein; Reviewed
Probab=31.51 E-value=1.1e+02 Score=30.55 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEE--EeCCHHHHHHHHHHhCCc
Q 016532 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATV--TYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 15 ~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFV--eF~s~e~A~~Ai~~lng~ 78 (388)
-...++.|..|..+++ +.. ++|+.....|+. -|..| .|.+.++|..||..|.-.
T Consensus 252 Aas~~~~L~~f~~~~~-L~~--------~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 252 SASRSDTLNAYAKKQN-LSH--------YHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCHHHHHHHHHHcC-cCc--------eEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3456788888887775 333 667776655554 34333 689999999999988754
No 201
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=31.43 E-value=24 Score=26.66 Aligned_cols=11 Identities=45% Similarity=1.395 Sum_probs=9.0
Q ss_pred ccCCCCCcccc
Q 016532 216 WSCPMCGNINW 226 (388)
Q Consensus 216 w~c~~c~~~n~ 226 (388)
|.|++|++..+
T Consensus 1 y~C~KCg~~~~ 11 (64)
T PF09855_consen 1 YKCPKCGNEEY 11 (64)
T ss_pred CCCCCCCCcce
Confidence 78999998764
No 202
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.43 E-value=34 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=17.8
Q ss_pred cCCCCCccccccccccccCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNT 237 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~ 237 (388)
.||.|+.+..+.-..|..|+.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCC
Confidence 588999998888888988875
No 203
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=30.05 E-value=28 Score=29.36 Aligned_cols=24 Identities=42% Similarity=0.913 Sum_probs=21.6
Q ss_pred CCCCCccccccccccccCCCCCCC
Q 016532 218 CPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 218 c~~c~~~n~~~~~~c~~c~~~~~~ 241 (388)
||.|+..=.+.+..|..|++.--+
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEe
Confidence 999999999999999999997544
No 204
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.12 E-value=56 Score=31.93 Aligned_cols=36 Identities=25% Similarity=0.180 Sum_probs=26.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCceEEEEecccCCC
Q 016532 58 ATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95 (388)
Q Consensus 58 aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~~~~~ 95 (388)
|||+|++..+|+.|++.+.... ...+.|..|..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655442 35567777765544
No 205
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=28.76 E-value=1.1e+02 Score=23.06 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCceee
Q 016532 20 DMLAEYFGTIGLLKK 34 (388)
Q Consensus 20 edL~~~F~~~G~i~~ 34 (388)
.+|+++|+.+|.|..
T Consensus 9 ~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAV 23 (62)
T ss_pred HHHHHHHHhcCcEEE
Confidence 579999999999986
No 206
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=28.55 E-value=36 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.847 Sum_probs=19.8
Q ss_pred cCCCCCccccccccccccCCCCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~~~~ 241 (388)
.|++|+...+ ...|-.|+++...
T Consensus 7 ~C~~CgvYTL--k~~CP~CG~~t~~ 29 (56)
T PRK13130 7 KCPKCGVYTL--KEICPVCGGKTKN 29 (56)
T ss_pred ECCCCCCEEc--cccCcCCCCCCCC
Confidence 6999999998 8999999987554
No 207
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=27.60 E-value=35 Score=24.26 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.8
Q ss_pred CCccCCCCCccccccccccccCCC
Q 016532 214 NDWSCPMCGNINWAKRTKCNICNT 237 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~~~~c~~c~~ 237 (388)
.-++|-.|..-|-..-+.|-.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 457899999999999999999986
No 208
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=27.49 E-value=35 Score=24.41 Aligned_cols=21 Identities=33% Similarity=0.854 Sum_probs=13.5
Q ss_pred cCCCCCc---cccccccccccCCC
Q 016532 217 SCPMCGN---INWAKRTKCNICNT 237 (388)
Q Consensus 217 ~c~~c~~---~n~~~~~~c~~c~~ 237 (388)
.||.|++ ++-..+..|..|+-
T Consensus 22 fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 22 FCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred cCcCCCcchheccCCcEECCCcCC
Confidence 5888877 22234677877764
No 209
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=27.11 E-value=35 Score=34.69 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.2
Q ss_pred ccCCCCCccccccccccccCCCC
Q 016532 216 WSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 216 w~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
|.|..||+.--.|.-.|..|++-
T Consensus 1 ~~c~~cg~~~~~~~g~cp~c~~w 23 (372)
T cd01121 1 YVCSECGYVSPKWLGKCPECGEW 23 (372)
T ss_pred CCCCCCCCCCCCccEECcCCCCc
Confidence 67999999999999999999863
No 210
>PRK11823 DNA repair protein RadA; Provisional
Probab=27.09 E-value=32 Score=35.77 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.9
Q ss_pred CccCCCCCccccccccccccCCCC
Q 016532 215 DWSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 215 dw~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
.|.|..||+.--.|.-.|..|++-
T Consensus 7 ~y~C~~Cg~~~~~~~g~Cp~C~~w 30 (446)
T PRK11823 7 AYVCQECGAESPKWLGRCPECGAW 30 (446)
T ss_pred eEECCcCCCCCcccCeeCcCCCCc
Confidence 589999999999999999999864
No 211
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=26.59 E-value=56 Score=22.58 Aligned_cols=25 Identities=24% Similarity=0.865 Sum_probs=15.2
Q ss_pred CCCCCccCCCCCcccccccc-----ccccCC
Q 016532 211 FGPNDWSCPMCGNINWAKRT-----KCNICN 236 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~~~-----~c~~c~ 236 (388)
|..| ..||.|++....+.. .|+.|.
T Consensus 15 W~~g-~~CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 15 WPDG-FVCPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCC-CCCCCCCCeeeEEeCCCCeEECCCCC
Confidence 4445 569999986444333 466665
No 212
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=26.53 E-value=22 Score=39.73 Aligned_cols=51 Identities=27% Similarity=0.707 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcc
Q 016532 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (388)
.-+...|+ .|+...|. ..|-.|++.-. -.|.|+.|+..
T Consensus 652 ei~~r~Cp--~Cg~~t~~--~~Cp~CG~~T~--------------------------------------~~~~Cp~C~~~ 689 (900)
T PF03833_consen 652 EIGRRRCP--KCGKETFY--NRCPECGSHTE--------------------------------------PVYVCPDCGIE 689 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecccCc--ccCCcchh--hcCcccCCccc--------------------------------------cceeccccccc
Confidence 44788998 79988654 46888876532 24899999997
Q ss_pred ccccccccccCCCCC
Q 016532 225 NWAKRTKCNICNTNK 239 (388)
Q Consensus 225 n~~~~~~c~~c~~~~ 239 (388)
.-.. .|..|+..-
T Consensus 690 ~~~~--~C~~C~~~~ 702 (900)
T PF03833_consen 690 VEED--ECPKCGRET 702 (900)
T ss_dssp ---------------
T ss_pred cCcc--ccccccccC
Confidence 6544 999999763
No 213
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=26.28 E-value=39 Score=33.94 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=23.2
Q ss_pred cCCCCCccccccccccccCCCCCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~~~~~ 242 (388)
.|+.|++.-|=-.+.|..|+++..-.
T Consensus 1 ~C~~Cg~~v~FeNt~C~~Cg~~LGf~ 26 (343)
T PF10005_consen 1 SCPNCGQPVFFENTRCLSCGSALGFD 26 (343)
T ss_pred CCCCCCCcceeCCCccccCCccccCC
Confidence 59999999999999999999987543
No 214
>COG4640 Predicted membrane protein [Function unknown]
Probab=26.24 E-value=33 Score=34.98 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=22.1
Q ss_pred cCCCCCccccccccccccCCCCCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~~~~~ 242 (388)
.|++||.++-.--..|-+|+++-...
T Consensus 3 fC~kcG~qk~Ed~~qC~qCG~~~t~~ 28 (465)
T COG4640 3 FCPKCGSQKAEDDVQCTQCGHKFTSR 28 (465)
T ss_pred cccccccccccccccccccCCcCCch
Confidence 59999999888888899999987653
No 215
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.06 E-value=36 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.667 Sum_probs=16.4
Q ss_pred ccCCCCCccc----cccccccccCCCCCC
Q 016532 216 WSCPMCGNIN----WAKRTKCNICNTNKP 240 (388)
Q Consensus 216 w~c~~c~~~n----~~~~~~c~~c~~~~~ 240 (388)
..|+.|+... ......|..|+++..
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 5688888765 122567888887644
No 216
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=24.46 E-value=38 Score=25.81 Aligned_cols=25 Identities=36% Similarity=0.723 Sum_probs=19.4
Q ss_pred CccCCCCCccc-----cccccccccCCCCC
Q 016532 215 DWSCPMCGNIN-----WAKRTKCNICNTNK 239 (388)
Q Consensus 215 dw~c~~c~~~n-----~~~~~~c~~c~~~~ 239 (388)
...|+.|+|.- -+..+.|+.|++-.
T Consensus 19 ~VkCpdC~N~q~vFshast~V~C~~CG~~l 48 (67)
T COG2051 19 RVKCPDCGNEQVVFSHASTVVTCLICGTTL 48 (67)
T ss_pred EEECCCCCCEEEEeccCceEEEecccccEE
Confidence 45899999974 35678999999753
No 217
>COG4907 Predicted membrane protein [Function unknown]
Probab=23.14 E-value=1.3e+02 Score=31.49 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=8.7
Q ss_pred HHHHHHHHhcCceeec
Q 016532 20 DMLAEYFGTIGLLKKD 35 (388)
Q Consensus 20 edL~~~F~~~G~i~~~ 35 (388)
+.++.+++.|..+++.
T Consensus 489 ~aFKnfLsd~s~lke~ 504 (595)
T COG4907 489 QAFKNFLSDYSQLKEA 504 (595)
T ss_pred HHHHHHHHhHHHHhhC
Confidence 3444555666666553
No 218
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=23.13 E-value=38 Score=29.91 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=12.2
Q ss_pred CCCCccCCCCCccccc
Q 016532 212 GPNDWSCPMCGNINWA 227 (388)
Q Consensus 212 ~~~dw~c~~c~~~n~~ 227 (388)
-.|||.|+.|-...-.
T Consensus 15 P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 15 PEGDWICPFCEVEKSG 30 (148)
T ss_pred CCCCcCCCCCcCCCCC
Confidence 3689999999876533
No 219
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=22.89 E-value=42 Score=35.05 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.8
Q ss_pred CccCCCCCccccccccccccCCCC
Q 016532 215 DWSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 215 dw~c~~c~~~n~~~~~~c~~c~~~ 238 (388)
-|.|..||+.--.|.-.|..|++-
T Consensus 7 ~y~C~~Cg~~~~~~~g~Cp~C~~w 30 (454)
T TIGR00416 7 KFVCQHCGADSPKWQGKCPACHAW 30 (454)
T ss_pred eEECCcCCCCCccccEECcCCCCc
Confidence 489999999999999999999863
No 220
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=22.70 E-value=20 Score=33.76 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=46.0
Q ss_pred EEEecc----CCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016532 7 SVYVCN----LPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 7 tlfV~n----Lp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
+++.++ |...++++.+..+|++-+.+.. +++..+.+ +.++.+.||++.-....-.++..+.+.
T Consensus 82 ~~r~G~shapld~r~~~ei~~~v~s~a~p~~~--------~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEILYEVFSQAGPIEG--------VRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ccccCCCcchhhhhcchhhheeeecccCCCCC--------cccccccc-CCccCccchhhhhhhcCcHHhhhhccc
Confidence 445555 6677778888888888887766 56766665 778899999988777777777766554
No 221
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.60 E-value=47 Score=36.35 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.6
Q ss_pred cCCCCCccccccccccccCCCCCC
Q 016532 217 SCPMCGNINWAKRTKCNICNTNKP 240 (388)
Q Consensus 217 ~c~~c~~~n~~~~~~c~~c~~~~~ 240 (388)
.|+.|+..|-+--..|..|+++..
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~ 26 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLT 26 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCC
Confidence 699999999998889999988754
No 222
>PLN00209 ribosomal protein S27; Provisional
Probab=22.20 E-value=42 Score=26.85 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=21.7
Q ss_pred CccCCCCCccccc-----cccccccCCCCCCC
Q 016532 215 DWSCPMCGNINWA-----KRTKCNICNTNKPG 241 (388)
Q Consensus 215 dw~c~~c~~~n~~-----~~~~c~~c~~~~~~ 241 (388)
+..|+.|.|++.. ..+.|..|++....
T Consensus 36 ~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 67 (86)
T PLN00209 36 DVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQ 67 (86)
T ss_pred EEECCCCCCeeEEEecCceEEEccccCCEeec
Confidence 5789999999865 46789999997643
No 223
>PTZ00146 fibrillarin; Provisional
Probab=21.97 E-value=1.5e+02 Score=29.30 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=3.0
Q ss_pred cccCCCC
Q 016532 167 CNRCGTA 173 (388)
Q Consensus 167 C~rC~~~ 173 (388)
|.++-+|
T Consensus 78 ~t~n~~p 84 (293)
T PTZ00146 78 VTKNMVP 84 (293)
T ss_pred EeecCCC
Confidence 4444444
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=21.90 E-value=39 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHH
Q 016532 3 MANGSVYVCNLPHGTDEDMLAEYFG 27 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~ 27 (388)
....+|.|.|||....+++|++.+.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4567899999999999999987543
No 225
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.53 E-value=50 Score=24.12 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=12.0
Q ss_pred cCCCCCccc--cccccccccCCCC
Q 016532 217 SCPMCGNIN--WAKRTKCNICNTN 238 (388)
Q Consensus 217 ~c~~c~~~n--~~~~~~c~~c~~~ 238 (388)
.|+.|+-.- -.-.++|..|+||
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~Cgap 30 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAP 30 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCc
Confidence 355555544 3445566666665
No 226
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.85 E-value=1e+02 Score=34.25 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=4.6
Q ss_pred HHHHHHHHHhC
Q 016532 66 HAALAAVEWFN 76 (388)
Q Consensus 66 e~A~~Ai~~ln 76 (388)
++..++|..||
T Consensus 105 edks~iIrvlN 115 (894)
T KOG0132|consen 105 EDKSDIIRVLN 115 (894)
T ss_pred HHHHHHHHhhh
Confidence 33344444444
No 227
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=20.51 E-value=56 Score=22.74 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=4.7
Q ss_pred CccCCCCCcc
Q 016532 215 DWSCPMCGNI 224 (388)
Q Consensus 215 dw~c~~c~~~ 224 (388)
-|.|+.|+++
T Consensus 20 ~~vC~~Cg~~ 29 (52)
T smart00661 20 RFVCRKCGYE 29 (52)
T ss_pred EEECCcCCCe
Confidence 3445555444
No 228
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=18 Score=37.35 Aligned_cols=80 Identities=3% Similarity=-0.164 Sum_probs=53.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016532 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
+...|+..||..+++.+|..+|.-||.|.... +..-...+...-.+||+... ..+..+|..+.-..+.+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d--------~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~ 73 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMED--------GSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQ 73 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeecc--------CCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhh
Confidence 34678889999999999999999999998733 32222234445567776543 3445555544444566677
Q ss_pred EEEEecccC
Q 016532 85 IGVFIAESR 93 (388)
Q Consensus 85 I~V~~a~~~ 93 (388)
+.|.++...
T Consensus 74 ~r~~~~~~s 82 (572)
T KOG4365|consen 74 DRKAVSPSS 82 (572)
T ss_pred hhhhcCchh
Confidence 777777643
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.28 E-value=2.9e+02 Score=21.54 Aligned_cols=58 Identities=12% Similarity=-0.024 Sum_probs=38.7
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 016532 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
.-|+-.++..++..+|+..++++-.|...+ |..+.-+. ..-=|||++..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~------Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEK------VNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEE------EEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 355666889999999999998754444322 54444331 22359999988888776544
No 230
>PF12523 DUF3725: Protein of unknown function (DUF3725); InterPro: IPR022199 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF01577 from PFAM. There is a conserved FLE sequence motif.
Probab=20.22 E-value=42 Score=25.64 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.5
Q ss_pred CCCCCccCCCCCccccc
Q 016532 211 FGPNDWSCPMCGNINWA 227 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~ 227 (388)
|...+|.|-.|+|.|-.
T Consensus 55 fe~Elw~Ch~C~~ts~k 71 (74)
T PF12523_consen 55 FESELWECHSCDNTSTK 71 (74)
T ss_pred CccceEEeecCCCchhh
Confidence 77899999999998843
Done!