BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016533
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 128 IYQEVIEDL--GVYIVSYDRAGYGESD--PNPNRTVKSDAL--DIEELADQLGVGSKFYV 181
+ +E ++D G +V +D+ G G S P R DAL D LA+ LGV +F +
Sbjct: 41 VLREGLQDYLEGFRVVYFDQRGSGRSLELPQDPRLFTVDALVEDTLLLAEALGV-ERFGL 99
Query: 182 IGYSMGGHPIWGCLKYIPHRLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWAVRV 241
+ + G L+ P GA LLAP VN+ W A L++ A LP + ++
Sbjct: 100 LAHGFGAVVALEVLRRFPQA-EGAILLAPWVNFPW--LAARLAEAAGLAPLPDPEENLKE 156
Query: 242 A 242
A
Sbjct: 157 A 157
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 131 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 189
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 190 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 238
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PIFGQKPDYPQGVPLDVFA 141
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 131 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 189
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 190 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 238
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 131 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 189
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 190 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 238
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 131 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 189
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 190 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 238
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 131 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 189
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 190 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 238
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 137 GVYIVSYDRAGYGESDPNPNRTVKSD--ALDIEELADQLGVGSKFYVIGYSMGGH 189
G ++ D G+G+SD N +SD A ++ + DQL + +K +++G SMGGH
Sbjct: 66 GYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDI-AKIHLLGNSMGGH 119
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 135 DLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIW 192
D G +++YDR G+G+S P + A D+ + + L + ++G+SMG G
Sbjct: 49 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVAR 107
Query: 193 GCLKYIPHRLAGAGLLAPVVNYWWP--GFPANLSKEAYYQQLPQDQWAVRVAHYIPWLTY 250
Y R+A LA + + P + + ++ + A R A Y +
Sbjct: 108 YVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFND 167
Query: 251 WWN 253
++N
Sbjct: 168 FYN 170
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 137 GVYIVSYDRAGYGESDPNPNRTVKSDALDIEELA---DQLGVGSKFYVIGYSMGGHPIWG 193
G +++ D GYGES P + +E+ D+LG+ + IG+ GG +W
Sbjct: 66 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 124
Query: 194 CLKYIPHRL-AGAGLLAPVV 212
+ P R+ A A L P +
Sbjct: 125 MALFYPERVRAVASLNTPFI 144
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 137 GVYIVSYDRAGYGESDPNPNRTVKSDALDIEELA---DQLGVGSKFYVIGYSMGGHPIWG 193
G +++ D GYGES P + +E+ D+LG+ + IG+ GG +W
Sbjct: 81 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 139
Query: 194 CLKYIPHRL-AGAGLLAPVV 212
+ P R+ A A L P +
Sbjct: 140 MALFYPERVRAVASLNTPFI 159
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 137 GVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCL 195
G ++++DR G+G SD P+ + + A D+ L + L + + IG+S GG +
Sbjct: 48 GYRVIAHDRRGHGRSDQPSTGHDMDTYAADVAALTEALDLRGAVH-IGHSTGGGEV---A 103
Query: 196 KYI----PHRLAGAGLLAPV 211
+Y+ P R+A A L++ V
Sbjct: 104 RYVARAEPGRVAKAVLVSAV 123
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 137 GVYIVSYDRAGYGESDPNPNRTVKSDALDIEELA---DQLGVGSKFYVIGYSMGGHPIWG 193
G +++ D GYGES P + +E+ D+LG+ + IG+ GG +W
Sbjct: 285 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 343
Query: 194 CLKYIPHRL-AGAGLLAPVV 212
+ P R+ A A L P +
Sbjct: 344 MALFYPERVRAVASLNTPFI 363
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 135 DLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIW 192
D G +++YDR G+G+S P + A D+ + + L + ++G+SMG G
Sbjct: 48 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVAR 106
Query: 193 GCLKYIPHRLAGAGLLAPVVNYWWP--GFPANLSKEAYYQQLPQDQWAVRVAHYIPWLTY 250
Y R+A LA + + P + + ++ + A R A Y +
Sbjct: 107 YVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFND 166
Query: 251 WWNTQK 256
++N +
Sbjct: 167 FYNLDE 172
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 135 DLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIW 192
D G +++YDR G+G+S P + A D+ + + L + ++G+SMG G
Sbjct: 48 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVAR 106
Query: 193 GCLKYIPHRLAGAGLLAPV 211
Y R+A LA +
Sbjct: 107 YVSSYGTARIAKVAFLASL 125
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 121 PILWCGGIYQEVIEDLGVY---------IVSYDRAGYGESDPNPNRTVKSDALDIEELAD 171
PI+ G++ +++LGV I+ D +G S P + A D+ + D
Sbjct: 18 PIVLVHGLFGS-LDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYPAMAQDLVDTLD 76
Query: 172 QLGVGSKFYVIGYSMGGHPIWGCLKYIPHRL 202
L + K IG+SMGG + P R+
Sbjct: 77 ALQI-DKATFIGHSMGGKAVMALTALAPDRI 106
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 97 IFFVHGFDSCRHDSAVANFLSPFMPILWCGGIYQEVIEDLGVYIVSYDRAGYGESDP-NP 155
I F+HG + + + F P + G YQ + DL G G SDP +P
Sbjct: 24 IIFLHGLSLDKQSTCL--FFEPLSNV----GQYQRIYLDL---------PGXGNSDPISP 68
Query: 156 NRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPHRLAGAGLLAPVV 212
+ + IE + + +G +F + G+S GG+ ++ + G L PV+
Sbjct: 69 STSDNVLETLIEAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 97 IFFVHGFDSCRHDSAVANFLSPFMPILWCGGIYQEVIEDLGVYIVSYDRAGYGESDP-NP 155
I F+HG + + + F P + G YQ + DL G G SDP +P
Sbjct: 24 IIFLHGLSLDKQSTXL--FFEPLSNV----GQYQRIYLDL---------PGXGNSDPISP 68
Query: 156 NRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPHRLAGAGLLAPVV 212
+ + IE + + +G +F + G+S GG+ ++ + G L PV+
Sbjct: 69 STSDNVLETLIEAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 135 DLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIW 192
D G +++YDR G+G+S P + A D+ + + L + ++G+S G G
Sbjct: 48 DAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSTGTGEVAR 106
Query: 193 GCLKYIPHRLAGAGLLAPVVNYWWP--GFPANLSKEAYYQQLPQDQWAVRVAHYIPWLTY 250
Y R+A LA + + P + + ++ + A R A Y +
Sbjct: 107 YVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFND 166
Query: 251 WWNTQK 256
++N +
Sbjct: 167 FYNLDE 172
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 162 DALDIEELADQLGVGSKFYVIGYSMGGHPIW-GCLKY---IPHRLA-GAGLLAPVVN 213
D + I +LA+Q+ SK Y++ +GG IW G + + LA G++A ++N
Sbjct: 45 DFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIIN 101
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 130 QEVIEDLGVYIVSYDRAGYGESDPN-PNRTV---KSDALDIEELADQLGVGSKFYVIGYS 185
QE + ++GV + D G+G+SD + T+ ++ L + + A +L + Y+ G+S
Sbjct: 49 QETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHS 108
Query: 186 MGG 188
GG
Sbjct: 109 QGG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,537,435
Number of Sequences: 62578
Number of extensions: 632205
Number of successful extensions: 1168
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 36
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)