BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016534
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 150/382 (39%), Gaps = 76/382 (19%)
Query: 77 LCSSDSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQML 136
LC + + +L L G++G++ P +S ++L L LS NY G IP+S+ SLS L+ L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 137 TLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLP 196
L N +P L +K P ++L + LS N+LTG +P
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 197 KLP---PNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFF------- 246
K NL+ L L NN SG I D L ++L+ N F GT+ A F
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
Query: 247 --LLPALQQVNLSN---------------------------------NTLTRV--GISKP 269
+ + V + N N +RV G + P
Sbjct: 564 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 623
Query: 270 V-DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLF 328
D ++ +D+ +N + GY+P P L L++ +N + G IP E + L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 329 LDGNFLIGKAPIGF---------------FTGDVPVAGS---------LGDNCLQGCPVS 364
L N L G+ P +G +P G L + L G P+
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 743
Query: 365 SQLCSPSQ-KSYSVCKQAYGRR 385
C PS Y+ ++++GRR
Sbjct: 744 R--CDPSNADGYAHHQRSHGRR 763
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 127/301 (42%), Gaps = 52/301 (17%)
Query: 70 THFTCGLLCSSDSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISS 129
+F+ G+ D + + L + SG + IS T+L +L++S N F GPIP
Sbjct: 207 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LP 264
Query: 130 LSNLQMLTLRSNSFSSSVP-------DSLTQLKXXXXX------------------XXXX 164
L +LQ L+L N F+ +P D+LT L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 165 XXXXXXXPKNTFL-MSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDG 223
P +T L M L+ LDLS+N+ +G LP+ NLS
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-------------------- 364
Query: 224 LTQLEVIELSENSFTGTLEAWFFLLP--ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDL 281
L ++LS N+F+G + P LQ++ L NN T I + S+LV++ L
Sbjct: 365 -ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHL 422
Query: 282 GFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIG 341
FN + G +P + L L + N L G IP E + K+L+ L LD N L G+ P G
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 342 F 342
Sbjct: 483 L 483
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 13/239 (5%)
Query: 108 QLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXXXX 167
+L L +S N G + +S NL+ L + SN+FS+ +P L
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 168 XXXXPKNTFLMSSLRRLDLSYNKLTGSLPKLP-PNLSELALKNNVLSGVITKNSFDGLTQ 226
+ + L+ L++S N+ G +P LP +L L+L N +G I
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 227 LEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVD---GRSDLVAVDLGF 283
L ++LS N F G + +F L+ + LS+N + P+D L +DL F
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSF 349
Query: 284 NKIQGYLPVNFADYPM-LSSLSMRYNRLRGGI--PLEFSHKKSLKRLFLDGNFLIGKAP 339
N+ G LP + + L +L + N G I L + K +L+ L+L N GK P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 179 SSLRRLDLSYNKLTGSLPKLP-----PNLSELALKNNVLSGVITKNSFDGLTQLEVIELS 233
+SL LDLS N L+G + L L L + +N L + L LEV++LS
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 234 ENSFTGTLEAWFFL---LPALQQVNLSNNTLT-RVGISKPVDGRSDLVAVDLGFNKIQGY 289
NS +G + L L+ + +S N ++ V +S+ V +L +D+ N
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNNFSTG 212
Query: 290 LPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP 339
+P D L L + N+L G S LK L + N +G P
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 127/311 (40%), Gaps = 49/311 (15%)
Query: 77 LCSSDSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQML 136
LC + + +L L G++G++ P +S ++L L LS NY G IP+S+ SLS L+ L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 137 TLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLP 196
L N +P L +K P ++L + LS N+LTG +P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 197 KLP---PNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFF------- 246
K NL+ L L NN SG I D L ++L+ N F GT+ A F
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 247 --LLPALQQVNLSN---------------------------------NTLTRV--GISKP 269
+ + V + N N +RV G + P
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 270 V-DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLF 328
D ++ +D+ +N + GY+P P L L++ +N + G IP E + L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 329 LDGNFLIGKAP 339
L N L G+ P
Sbjct: 687 LSSNKLDGRIP 697
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 127/301 (42%), Gaps = 52/301 (17%)
Query: 70 THFTCGLLCSSDSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISS 129
+F+ G+ D + + L + SG + IS T+L +L++S N F GPIP
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LP 267
Query: 130 LSNLQMLTLRSNSFSSSVP-------DSLTQLKXXXXX------------------XXXX 164
L +LQ L+L N F+ +P D+LT L
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 165 XXXXXXXPKNTFL-MSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDG 223
P +T L M L+ LDLS+N+ +G LP+ NLS
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-------------------- 367
Query: 224 LTQLEVIELSENSFTGTLEAWFFLLP--ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDL 281
L ++LS N+F+G + P LQ++ L NN T I + S+LV++ L
Sbjct: 368 -ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHL 425
Query: 282 GFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIG 341
FN + G +P + L L + N L G IP E + K+L+ L LD N L G+ P G
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 342 F 342
Sbjct: 486 L 486
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 123/310 (39%), Gaps = 53/310 (17%)
Query: 88 LTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSV 147
L LD +G++ +S T L + LS+N G IP I L NL +L L +NSFS ++
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 148 PDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLP--------KLP 199
P L + SL LDL+ N G++P K+
Sbjct: 531 PAELGDCR------------------------SLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 200 PNL----SELALKNNVL----SGVITKNSFDGLTQLEVIELSENS--------FTGTLEA 243
N + +KN+ + G F G+ ++ LS + + G
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 244 WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSL 303
F ++ +++S N L+ I K + L ++LG N I G +P D L+ L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 304 SMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP-IGFFTGDVPVAGSLGDNCLQGCP 362
+ N+L G IP S L + L N L G P +G F P A L + L G P
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE-TFPPAKFLNNPGLCGYP 744
Query: 363 VSSQLCSPSQ 372
+ C PS
Sbjct: 745 LPR--CDPSN 752
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 13/239 (5%)
Query: 108 QLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXXXX 167
+L L +S N G + +S NL+ L + SN+FS+ +P L
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 168 XXXXPKNTFLMSSLRRLDLSYNKLTGSLPKLP-PNLSELALKNNVLSGVITKNSFDGLTQ 226
+ + L+ L++S N+ G +P LP +L L+L N +G I
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 227 LEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVD---GRSDLVAVDLGF 283
L ++LS N F G + +F L+ + LS+N + P+D L +DL F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSF 352
Query: 284 NKIQGYLPVNFADYPM-LSSLSMRYNRLRGGIPLEFSH--KKSLKRLFLDGNFLIGKAP 339
N+ G LP + + L +L + N G I K +L+ L+L N GK P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 179 SSLRRLDLSYNKLTGSLPKLP-----PNLSELALKNNVLSGVITKNSFDGLTQLEVIELS 233
+SL LDLS N L+G + L L L + +N L + L LEV++LS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 234 ENSFTGTLEAWFFL---LPALQQVNLSNNTLT-RVGISKPVDGRSDLVAVDLGFNKIQGY 289
NS +G + L L+ + +S N ++ V +S+ V +L +D+ N
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNNFSTG 215
Query: 290 LPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP 339
+P D L L + N+L G S LK L + N +G P
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 135/326 (41%), Gaps = 78/326 (23%)
Query: 26 LTSPQDISALKAFKASI-KPSSIQPWSCLASWDFTATDPCALPRRTHFTCGLLCSSDSTR 84
L +PQD AL K + P+++ W TD C RT G+LC +D+
Sbjct: 2 LCNPQDKQALLQIKKDLGNPTTLSSW-------LPTTDCC---NRTWL--GVLCDTDTQT 49
Query: 85 VTQLTLDPAGYS-GQLTPLISQLTQLTILDL----SDNYFFGPIPASISSLSNLQMLTLR 139
LD +G + + P+ S L L L+ N GPIP +I+ L+ L L +
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 140 SNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLP--- 196
+ S ++PD L+Q+K +L LD SYN L+G+LP
Sbjct: 110 HTNVSGAIPDFLSQIK------------------------TLVTLDFSYNALSGTLPPSI 145
Query: 197 KLPPNLSELALKNNVLSGV----------------ITKNSFDGLT-------QLEVIELS 233
PNL + N +SG I++N G L ++LS
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 234 ENSFTGTLEAWFFLLPALQQVNLSNNTLT----RVGISKPVDGRSDLVAVDLGFNKIQGY 289
N G F Q+++L+ N+L +VG+SK ++G +DL N+I G
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG------LDLRNNRIYGT 259
Query: 290 LPVNFADYPMLSSLSMRYNRLRGGIP 315
LP L SL++ +N L G IP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 50/246 (20%)
Query: 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXX 169
+LDL +N +L NL L L +N S P + L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--------------- 99
Query: 170 XXPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEV 229
L RL LS N+L K+P L EL + N ++ V K+ F+GL Q+ V
Sbjct: 100 ---------VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIV 149
Query: 230 IELSEN----------SFTGTLEAWFF-------------LLPALQQVNLSNNTLTRVGI 266
+EL N +F G + + L P+L +++L N +T+V
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 267 SKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKR 326
+ + G ++L + L FN I + A+ P L L + N+L +P + K ++
Sbjct: 210 AS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267
Query: 327 LFLDGN 332
++L N
Sbjct: 268 VYLHNN 273
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 50/246 (20%)
Query: 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXX 169
+LDL +N +L NL L L +N S P + L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--------------- 99
Query: 170 XXPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEV 229
L RL LS N+L K+P L EL + N ++ V K+ F+GL Q+ V
Sbjct: 100 ---------VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIV 149
Query: 230 IELSEN----------SFTGTLEAWFF-------------LLPALQQVNLSNNTLTRVGI 266
+EL N +F G + + L P+L +++L N +T+V
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 267 SKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKR 326
+ + G ++L + L FN I + A+ P L L + N+L +P + K ++
Sbjct: 210 AS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267
Query: 327 LFLDGN 332
++L N
Sbjct: 268 VYLHNN 273
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 87/221 (39%), Gaps = 9/221 (4%)
Query: 123 IPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLR 182
+P IS + L L L++N S D L+ K + L+
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 183 RLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGT-L 241
+L +S N L P LP +L EL + +N + V K F GL + IE+ N +
Sbjct: 106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGF 164
Query: 242 EAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLS 301
E F L + +S LT + P D L + L NKIQ + Y L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGI----PKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 220
Query: 302 SLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGF 342
L + +N++R S +L+ L LD N L + P G
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGL 260
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 177 LMSSLRRLDLSYNKLT----GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIEL 232
L ++++ LDLS+NK+T G L + NL L LK++ ++ I ++F L LE ++L
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81
Query: 233 SENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
S+N + +WF L +L+ +NL N +G++ ++L + +G ++ + +
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG--NVETFSEI 139
Query: 293 NFADYPMLSSLS 304
D+ L+SL+
Sbjct: 140 RRIDFAGLTSLN 151
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 177 LMSSLRRLDLSYNKLT----GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIEL 232
L ++++ LDLS+NK+T G L + NL L LK++ + I ++F L LE ++L
Sbjct: 50 LTAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDL 107
Query: 233 SENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
S+N + +WF L +L+ +NL N +G++ ++L + +G ++ + +
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG--NVETFSEI 165
Query: 293 NFADYPMLSSLS 304
D+ L+SL+
Sbjct: 166 RRIDFAGLTSLN 177
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 5/198 (2%)
Query: 137 TLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTG-SL 195
T+++N SV D++TQ + + + ++R L L NKL S
Sbjct: 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA 80
Query: 196 PKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVN 255
K NL+ L L N L + FD LT L+ + L EN + F L L +N
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 256 LSNNTLTRVGISKPV-DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGI 314
L++N L + K V D ++L +DL +N++Q F L L + N+L+
Sbjct: 140 LAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 315 PLEFSHKKSLKRLFLDGN 332
F SL+ ++L N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 103 ISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXX 162
+ +LT LT L L+ N L+NL+ L L N S+PD +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLN 139
Query: 163 XXXXXXXXXPKNTF-LMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSF 221
PK F +++L LDLSYN+L SLP+ GV F
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE----------------GV-----F 177
Query: 222 DGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN 259
D LTQL+ + L +N + F L +LQ + L +N
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 200 PNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN 259
P L+ L++ NN L I ++F T L+ ++LS N T L+P+L N+S N
Sbjct: 141 PKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYN 196
Query: 260 TLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFA------------------DYPMLS 301
L+ + I V+ +L A N ++G PVN +YP L
Sbjct: 197 LLSTLAIPIAVE---ELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLV 251
Query: 302 SLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG 336
+ + YN L + F + L+RL++ N L+
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 179 SSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGV----------ITKNSFDGL---- 224
+SL+ L LS N+LT L P+L + N+LS + + NS + +
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224
Query: 225 -TQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRV---------GISKPVDGRS 274
+L +++L N+ T T AW P L +V+LS N L ++ + + +
Sbjct: 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 275 DLVA-------------VDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHK 321
LVA +DL N + ++ N + L +L + +N + + L+ S
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTH 338
Query: 322 KSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQL 367
+LK L L N + F VA D+ Q C + QL
Sbjct: 339 HTLKNLTLSHNDWDCNSLRALFRN---VARPAVDDADQHCKIDYQL 381
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 37/178 (20%)
Query: 181 LRRLDLSYNKLTGSLPK----LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENS 236
L R DLS SLP+ P L+ L++ NN L I ++F T L+ ++LS N
Sbjct: 130 LERNDLS------SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNR 182
Query: 237 FTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFA- 295
T L+P+L N+S N L+ + I V+ +L A N ++G PVN
Sbjct: 183 LT---HVDLSLIPSLFHANVSYNLLSTLAIPIAVE---ELDASHNSINVVRG--PVNVEL 234
Query: 296 -----------------DYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG 336
+YP L + + YN L + F + L+RL++ N L+
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 51/239 (21%)
Query: 179 SSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGV----------ITKNSFDGL---- 224
+SL+ L LS N+LT L P+L + N+LS + + NS + +
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230
Query: 225 -TQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRV---------GISKPVDGRS 274
+L +++L N+ T T AW P L +V+LS N L ++ + + +
Sbjct: 231 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 275 DLVA-------------VDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHK 321
LVA +DL N + ++ N + L +L + +N + + L+ S
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTH 344
Query: 322 KSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQL-----CSPSQKSY 375
+LK L L N + F VA D+ Q C + QL C S K Y
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRN---VARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 215 VITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRS 274
+ K+ F T LE + L++N + F+ L L ++NLS N L + S+ +
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLD 347
Query: 275 DLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGN 332
L +DL +N I+ +F P L L++ N+L+ F SL++++L N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 113 DLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXP 172
DLS + F + + S ++L+ LTL N + ++ L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 173 KNTFLMSSLRRLDLSYNKLT--GSLPKLP-PNLSELALKNNVLSGVITKNSFDGLTQLEV 229
+ + L LDLSYN + G L PNL ELAL N L V FD LT L+
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQK 399
Query: 230 IELSEN 235
I L N
Sbjct: 400 IWLHTN 405
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 178 MSSLRRLDLSYNK---LTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
+S L+ L+LSYN+ L K P L L L L ++ F L L+V+ LS
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVD----GRSDLVAVDLGFNKIQGYL 290
+ + E F LPALQ +NL N + I K GR +++ L F +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV--LSFCDLSSID 492
Query: 291 PVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSL 324
F M++ + + +NRL SH K +
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 221 FDGLTQL--EVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVA 278
F+GL ++ E I L ++ F F LQ+++L+ L+ + + G S L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKK 305
Query: 279 VDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311
+ L NK + ++ +++P L+ LS++ N R
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 24/136 (17%)
Query: 189 NKLTGSLPKLPPNLSELALKNNVLSGV-----------ITKNSFDGLTQLEVIELSENSF 237
N L +LP LPP+L L +++N L+ + +++N F GL++L N+
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
Query: 238 TGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGY--LPVNFA 295
+ + + L P+L+++N+SNN L + P R L+A FN + LP N
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER--LIA---SFNHLAEVPELPQN-- 358
Query: 296 DYPMLSSLSMRYNRLR 311
L L + YN LR
Sbjct: 359 ----LKQLHVEYNPLR 370
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFL-LPALQQVNLSNN 259
NL+ L L +N L+G I +F GLT LE ++LS+N+ ++ F L L ++L
Sbjct: 56 NLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 260 TLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319
L +G G + L + L N +Q F D L+ L + NR+ F
Sbjct: 115 GLQELGPGL-FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 320 HKKSLKRLFLDGNFLIGKAPIGF 342
SL RL L N + P F
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAF 196
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 2/148 (1%)
Query: 198 LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLS 257
+P + + L N +S + SF L ++ L N+ G A F L L+Q++LS
Sbjct: 29 IPASSQRIFLHGNRIS-YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 258 NNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLE 317
+N RV G L + L +Q P F L L ++ N L+
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNT 147
Query: 318 FSHKKSLKRLFLDGNFLIGKAPIGFFTG 345
F +L LFL GN I P F G
Sbjct: 148 FRDLGNLTHLFLHGN-RIPSVPEHAFRG 174
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE-AWFFLLPALQQVNLSNN 259
NL+ L L +NVL+ I +F GL LE ++LS+N+ +++ A F L L ++L
Sbjct: 57 NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 260 TLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319
L +G G + L + L N +Q F D L+ L + NR+ F
Sbjct: 116 GLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 320 HKKSLKRLFLDGNFLIGKAPIGF 342
SL RL L N + P F
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAF 197
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 13/171 (7%)
Query: 186 LSYN--KLTGSLPK---------LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
+ YN K+T S P+ +P + L N +S V SF L ++ L
Sbjct: 7 VCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHS 65
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNF 294
N A F L L+Q++LS+N R G L + L +Q P F
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125
Query: 295 ADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345
L L ++ N L+ F +L LFL GN I P F G
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG 175
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE-AWFFLLPALQQVNLSNN 259
NL+ L L +NVL+ I +F GL LE ++LS+N+ +++ A F L L ++L
Sbjct: 56 NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 260 TLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319
L +G G + L + L N +Q F D L+ L + NR+ F
Sbjct: 115 GLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 320 HKKSLKRLFLDGNFLIGKAPIGF 342
SL RL L N + P F
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAF 196
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 13/171 (7%)
Query: 186 LSYN--KLTGSLPK---------LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
+ YN K+T S P+ +P + L N +S V SF L ++ L
Sbjct: 6 VCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHS 64
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNF 294
N A F L L+Q++LS+N R G L + L +Q P F
Sbjct: 65 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 124
Query: 295 ADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345
L L ++ N L+ F +L LFL GN I P F G
Sbjct: 125 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG 174
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 198 LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLS 257
+P + +EL L +N L + + F L L +EL N TG F +Q++ L
Sbjct: 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86
Query: 258 NNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPL- 316
N + + +K G L ++L N+I +P +F L+SL++ N L
Sbjct: 87 ENKIKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Query: 317 ---EFSHKKSL 324
E+ KKSL
Sbjct: 146 WFAEWLRKKSL 156
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 106 LTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSV 147
L QL L+L DN +P S L++L L L SN F+ +
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Query: 177 LMSSLRRLDLSYNKLT---GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELS 233
L +++ LDLS N++T S + NL L L +N ++ I ++SF L LE ++LS
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108
Query: 234 ENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLG----FNKIQGY 289
N + +WF L +L +NL N +G + + L + +G F KIQ
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-- 166
Query: 290 LPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFL 329
+FA L L + + L+ P +++ L L
Sbjct: 167 -RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 29/168 (17%)
Query: 94 GYSGQLTPLISQLTQ-LTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLT 152
G SG L + S LT+ + LDLS+N + + NLQ L L SN ++ DS +
Sbjct: 38 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 153 QLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYN---KLTGSLPKLPPNLSELALKN 209
L SL LDLSYN L+ S K +L+ L L
Sbjct: 98 SL------------------------GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 210 NVLSGVITKNSFDGLTQLEVIELSE-NSFTGTLEAWFFLLPALQQVNL 256
N + + F LT+L+++ + ++FT F L L+++ +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 92 PAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVP--- 148
PAG + +L L L ++DN L NL L L N S P
Sbjct: 77 PAG-------IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 149 DSLTQLKXXXXXXXXXXXXXXXXPKNTF-LMSSLRRLDLSYNKL----TGSLPKLPPNLS 203
DSLT+L PK F ++SL+ L L N+L G+ KL L
Sbjct: 130 DSLTKL----TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE-LK 184
Query: 204 ELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQ 253
L L NN L V + +FD L +L++++L EN + T ++ L++
Sbjct: 185 TLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKK 233
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 184 LDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA 243
+D S KLT +P + +L L++N LS + +K +F LT+L ++ L++N TL A
Sbjct: 21 VDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQ-TLPA 78
Query: 244 WFFL--------------LPAL------QQVNLSNNTLTRVGIS----KPVDGRSDLVAV 279
F L AL Q VNL+ L R + + D + L +
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 280 DLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP 339
LG+N++Q F L L + N+L+ F LK L LD N L + P
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVP 197
Query: 340 IGFF 343
G F
Sbjct: 198 EGAF 201
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNT 260
NL+EL L N L + + FD LT+L + L N + F L +L+++ L NN
Sbjct: 110 NLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 261 LTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYN 308
L RV D ++L + L N+++ F L L ++ N
Sbjct: 169 LKRVP-EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNT 260
NLS L L+ N+ + + FD L LE IE N F +P L+Q+NL++N
Sbjct: 148 NLSHLELRANIEE--MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 261 LTRV 264
L V
Sbjct: 206 LKSV 209
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNT 260
NL EL L +N L G + FD LTQL V++L N T A F L L+++ + N
Sbjct: 65 NLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 261 LTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRY 307
LT + + ++ + L + L N+++ + + LSSL+ Y
Sbjct: 124 LTE--LPRGIERLTHLTHLALDQNQLKS---IPHGAFDRLSSLTHAY 165
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 107 TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS---SVPDSLTQLKXXXXXXXX 163
T IL L DN P SL NL+ L L SN + V DSLTQL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL----TVLDL 95
Query: 164 XXXXXXXXPKNTF-LMSSLRRLDLSYNKLTGSLPK---LPPNLSELALKNNVLSGVITKN 219
P F + L+ L + NKLT LP+ +L+ LAL N L I
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHG 153
Query: 220 SFDGLTQL 227
+FD L+ L
Sbjct: 154 AFDRLSSL 161
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 11/160 (6%)
Query: 177 LMSSLRRLDLSYNKLT---GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELS 233
L +++ LDLS N++T S + NL L L +N + I ++SF L LE ++LS
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLS 82
Query: 234 ENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLG----FNKIQGY 289
N + +WF L +L +NL N +G + + L + +G F KIQ
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 290 LPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFL 329
+FA L L + + L+ P +++ L L
Sbjct: 143 ---DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 29/168 (17%)
Query: 94 GYSGQLTPLISQLTQ-LTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLT 152
G SG L + S LT+ + LDLS+N + + NLQ L L SN ++ DS +
Sbjct: 12 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 71
Query: 153 QLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYN---KLTGSLPKLPPNLSELALKN 209
L SL LDLSYN L+ S K +L+ L L
Sbjct: 72 SL------------------------GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 107
Query: 210 NVLSGVITKNSFDGLTQLEVIELSE-NSFTGTLEAWFFLLPALQQVNL 256
N + + F LT+L+++ + ++FT F L L+++ +
Sbjct: 108 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 155
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 266 ISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLK 325
+ K + L +DL N+I +F++ L +L + YNRLR P F KSL+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 326 RLFLDGNFLIGKAPIGFF 343
L L GN I P G F
Sbjct: 106 LLSLHGND-ISVVPEGAF 122
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 5/198 (2%)
Query: 137 TLRSNSFSSSVPDSLTQLKXXXXXXXXXXXXXXXXPKNTFLMSSLRRLDLSYNKLTG-SL 195
T+++N SV D++TQ + + + ++R L L NKL S
Sbjct: 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA 80
Query: 196 PKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVN 255
K NL+ L L N L + FD LT L+ + L EN + F L L +
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 256 LSNNTLTRVGISKPV-DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGI 314
L +N L + K V D ++L +DL N++Q F L LS+ N+L+
Sbjct: 140 LYHNQLQ--SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 315 PLEFSHKKSLKRLFLDGN 332
F SL ++L N
Sbjct: 198 DGVFDRLTSLTHIWLLNN 215
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 125 ASISSLSNLQMLTLRSNSFSS---SVPDSLTQLKXXXXXXXXXXXXXXXXPKNTF-LMSS 180
+++ L+NL L L N S V D LT LK P F +++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL----PDGVFDKLTN 134
Query: 181 LRRLDLSYNKLTGSLPK----LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENS 236
L L L +N+L SLPK NL+ L L NN L + + FD LTQL+ + L++N
Sbjct: 135 LTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQ 192
Query: 237 FTGTLEAWFFLLPALQQVNLSNN 259
+ F L +L + L NN
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 106 LTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKXXXXXXXXXX 165
L L L+L DN + LS L+ L LR+N S + ++
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 166 XXXXXXPKNTFL-MSSLRRLDLSYNKLTGSLPKLPP--NLSELALKNNVLSGVITKNSFD 222
+ F +S+LR L+L+ L +P L P L EL L N LS I SF
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQ 228
Query: 223 GLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262
GL L+ + + ++ F L +L ++NL++N LT
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 216 ITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSD 275
I +F+GL L +EL +N T F L L+++ L NN + + S +
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPS 161
Query: 276 LVAVDLGFNKIQGYLPVN-FADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFL 334
L +DLG K Y+ F L L++ LR IP + L L L GN L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219
Query: 335 IGKAPIGFFTG 345
P G F G
Sbjct: 220 SAIRP-GSFQG 229
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 198 LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLS 257
+P N L L+ N + VI ++F L LE+++LS+N F LP+L + L
Sbjct: 33 IPVNTRYLNLQENSIQ-VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELF 91
Query: 258 NNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSM 305
+N LT V ++ + S L + L N I+ F P L L +
Sbjct: 92 DNRLTTVP-TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 190 KLTGSLPKLPPNLSELALKNNVLSG--VITKNSFDGLTQLEVIELSENSFTGTLEAWFFL 247
K+T LP N EL VL+ VI K +F G LE IE+S+N +EA F
Sbjct: 20 KVTEIPSDLPRNAIELRF---VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76
Query: 248 -LPALQQVNL--SNNTL 261
LP L ++ + +NN L
Sbjct: 77 NLPKLHEIRIEKANNLL 93
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 180 SLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTG 239
LR L++S N+LT SLP LPP L EL++ +N L+ + S GL +L + F
Sbjct: 82 ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--GLCKLWI-------FGN 131
Query: 240 TLEAWFFLLPALQQVNLSNNTL 261
L + L P LQ++++S+N L
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQL 153
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 191 LTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPA 250
+ G + L EL + + G+ + ++ L +L+ +ELSEN +G LE P
Sbjct: 35 IEGKIEGLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRISGDLEVLAEKCPN 94
Query: 251 LQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFN 284
L+ +NLS N + + +P+ +L ++DL FN
Sbjct: 95 LKHLNLSGNKIKDLSTIEPLKKLENLKSLDL-FN 127
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 179 SSLRRLDLSYNKLTGSLPK-LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237
S+ R L + K ++P+ +P L L N + + ++ F LE +EL+EN
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68
Query: 238 TGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADY 297
+ F L L+ + L +N L + + G S+L +D+ NKI L F D
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV-FTGLSNLTKLDISENKIVILLDYMFQDL 127
Query: 298 PMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLD 330
L SL + N L FS SL++L L+
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 279 VDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKA 338
+DLG N+I+ FA +P L L + N + P F++ +L+ L L N L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLI 95
Query: 339 PIGFFTG 345
P+G FTG
Sbjct: 96 PLGVFTG 102
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 198 LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLS 257
+P N L L+ N + VI ++F L LE+++LS+N F LP+L + L
Sbjct: 33 IPVNTRYLNLQENSIQ-VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELF 91
Query: 258 NNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSM 305
+N LT V ++ + S L + L N I+ F P L L +
Sbjct: 92 DNRLTTVP-TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 190 KLTGSLPKLPPNLSELALKNNVLSG--VITKNSFDGLTQLEVIELSENSFTGTLEAWFFL 247
K+T LP N EL VL+ VI K +F G LE IE+S+N +EA F
Sbjct: 20 KVTEIPSDLPRNAIELRF---VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76
Query: 248 -LPALQQVNL--SNNTL 261
LP L ++ + +NN L
Sbjct: 77 NLPKLHEIRIEKANNLL 93
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 182 RRLDLSYNKLTGSLPKLPP-------NLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
+RL L+ N++T KL P NL +L +N L+ + T FD LTQL ++L++
Sbjct: 36 QRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND 90
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNN 259
N F L +L + L NN
Sbjct: 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 100 TPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPD 149
T + +LTQLT LDL+DN+ + +L +L + L +N + D
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 106 LTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSS-VPDSLTQLKXXXXXXXXX 164
L L LD+S + + LS+L++L + NSF + +PD T+L+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 165 XXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLPKLPPN-LSELALKNNVLSGVIT--KNSF 221
P +SSL+ L++S+N SL P L+ L + + L+ ++T K
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 222 DGL-TQLEVIELSENSFTGTLEAWFFL 247
+ L + L++N F T E FL
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQSFL 270
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 90 LDPAGYSGQ---LTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS 145
L AG S Q L + ++L LT LDLS P + +SLS+LQ+L + N+F S
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 197 KLPPNLSELALKNNVLSGVITKNSFDGL----TQLEVIELSENSFTG----TLEAWFFLL 248
++ P L+EL L++N L V GL +++ + L TG L + L
Sbjct: 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112
Query: 249 PALQQVNLSNNTLTRVGISKPVDGRSD 275
P LQ+++LS+N L G+ +G D
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLD 139
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 89 TLDPAGYSGQ---LTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS 145
L AG S Q L + ++L LT LDLS P + +SLS+LQ+L + SN
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-K 507
Query: 146 SVPDSL 151
SVPD +
Sbjct: 508 SVPDGI 513
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 197 KLPPNLSELALKNNVLSGVITKNSFDGL----TQLEVIELSENSFTG----TLEAWFFLL 248
++ P L+EL L++N L V GL +++ + L TG L + L
Sbjct: 52 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111
Query: 249 PALQQVNLSNNTLTRVGISKPVDGRSD 275
P LQ+++LS+N L G+ +G D
Sbjct: 112 PTLQELHLSDNLLGDAGLQLLCEGLLD 138
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 106 LTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSS-VPDSLTQLKXXXXXXXXX 164
L L LD+S + + LS+L++L + NSF + +PD T+L+
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 165 XXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLPKLPPN-LSELALKNNVLSGVIT--KNSF 221
P +SSL+ L++S+N SL P L+ L + + L+ ++T K
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 222 DGL-TQLEVIELSENSFTGTLEAWFFL 247
+ L + L++N F T E FL
Sbjct: 563 QHFPSSLAFLNLTQNDFACTCEHQSFL 589
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 89 TLDPAGYSGQ---LTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS 145
L AG S Q L + ++L LT LDLS P + +SLS+LQ+L + N+F S
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 106 LTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSS-VPDSLTQLKXXXXXXXXX 164
L L LD+S + + LS+L++L + NSF + +PD T+L+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 165 XXXXXXXPKNTFLMSSLRRLDLSYNKLTGSLPKLPPN-LSELALKNNVLSGVIT--KNSF 221
P +SSL+ L++S+N SL P L+ L + + L+ ++T K
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 222 DGL-TQLEVIELSENSFTGTLEAWFFL 247
+ L + L++N F T E FL
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFL 565
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 89 TLDPAGYSGQ---LTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS 145
L AG S Q L + ++L LT LDLS P + +SLS+LQ+L + N+F S
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW 244
D S+ KLT LP N++ L L +N L + N F +QL +++ NS +
Sbjct: 10 DCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTN-FTRYSQLAILDAGFNSISKLEPEL 68
Query: 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLS 304
+LP L+ +NL +N L+++ V ++L +DL N I F + L L
Sbjct: 69 CQILPLLKVLNLQHNELSQISDQTFVFC-TNLTELDLMSNSIHKIKSNPFKNQKNLIKLD 127
Query: 305 MRYNRL 310
+ +N L
Sbjct: 128 LSHNGL 133
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 28 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 78
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 134
Query: 328 FLDGNFL 334
L N +
Sbjct: 135 ELSSNTI 141
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 270
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 271 NQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 28 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 78
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 134
Query: 328 FLDGNFL 334
L N +
Sbjct: 135 ELSSNTI 141
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 270
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 271 NQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 28 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 78
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 134
Query: 328 FLDGNFL 334
L N +
Sbjct: 135 ELSSNTI 141
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 270
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 271 NQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 28 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 78
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 134
Query: 328 FLDGNFL 334
L N +
Sbjct: 135 ELSSNTI 141
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 214 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 269
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 270 NQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPV 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 28 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 78
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 134
Query: 328 FLDGNFL 334
L N +
Sbjct: 135 ELSSNTI 141
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 214 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 269
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 270 NQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPV 322
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 33 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 83
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 84 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 139
Query: 328 FLDGNFL 334
L N +
Sbjct: 140 ELSSNTI 146
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 219 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 274
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 275 NQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPV 327
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
K NV + +++ D +T L+ L S G L L Q+N SNN LT +
Sbjct: 32 KTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI--- 82
Query: 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
P+ + LV + + N+I P A+ L+ L++ N++ PL+ + +L RL
Sbjct: 83 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRL 138
Query: 328 FLDGNFL 334
L N +
Sbjct: 139 ELSSNTI 145
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 177 LMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234
++++L L L+ N+L G+L L NL++L L NN +S + GLT+L ++L
Sbjct: 218 ILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGA 273
Query: 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPV 292
N + + L AL + L+ N L + P+ +L + L FN I PV
Sbjct: 274 NQISNI--SPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPV 326
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 254 VNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRL 310
+NL++N L R+ + S L ++D+GFN I P PML L++++N L
Sbjct: 35 LNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW 244
D S+ KLT LP N++ L L +N L + N F +QL +++ N+ +
Sbjct: 15 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPEL 73
Query: 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLS 304
LP L+ +NL +N L+++ K ++L + L N IQ F L +L
Sbjct: 74 CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 132
Query: 305 MRYNRL 310
+ +N L
Sbjct: 133 LSHNGL 138
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 254 VNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRL 310
+NL++N L R+ + S L ++D+GFN I P PML L++++N L
Sbjct: 30 LNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW 244
D S+ KLT LP N++ L L +N L + N F +QL +++ N+ +
Sbjct: 10 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPEL 68
Query: 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLS 304
LP L+ +NL +N L+++ K ++L + L N IQ F L +L
Sbjct: 69 CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127
Query: 305 MRYNRL 310
+ +N L
Sbjct: 128 LSHNGL 133
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 254 VNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRL 310
+NL++N L R+ + S L ++D+GFN I P PML L++++N L
Sbjct: 40 LNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW 244
D S+ KLT LP N++ L L +N L + N F +QL +++ N+ +
Sbjct: 20 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPEL 78
Query: 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLS 304
LP L+ +NL +N L+++ K ++L + L N IQ F L +L
Sbjct: 79 CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 137
Query: 305 MRYNRL 310
+ +N L
Sbjct: 138 LSHNGL 143
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 187 SYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGL----TQLEVIELSENSFT---- 238
+ K GS + P+L+EL L+ N L GL +++ + L S T
Sbjct: 39 EHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEAGC 98
Query: 239 GTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSD 275
G L + LP L++++LS+N L G+ +G D
Sbjct: 99 GVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLD 135
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 231 ELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFN 284
ELSEN G L+ LP L +NLS N L + +P+ L ++DL FN
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL-FN 129
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN 259
L+ L L NN L+ V+ FD LTQL + L++N F L +L + L NN
Sbjct: 64 LTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 180 SLRRLDLSYNKLTGSLPKLPPNLSELA---LKNNVLSGVITKNSFDGLTQLEVIELSENS 236
+LR LDLS N L L +L L L NN + V+ +N+F+ + QL+ + LS+N
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147
Query: 237 ---FTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267
F L LP L ++LS+N L ++ ++
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN 259
L+ L L NN L+ V+ FD LTQL + L++N F L +L + L NN
Sbjct: 56 LTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLS------DNYFFGP 122
RVT L+L+ G SG++ I QLT+L +L L + FGP
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN 259
L+ L L NN L+ V+ FD LTQL + L++N F L +L + L NN
Sbjct: 56 LTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 231 ELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFN 284
ELS+N +G LE P L +NLS N + + +P+ +L ++DL FN
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL-FN 122
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 179 SSLRRLDLSYNK---LTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSEN 235
+SLR LDLS+N ++ + L L L +++ L V ++F L +L +++S
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 236 SFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFA 295
+ + F L +L + ++ N+ +S ++L +DL +++ F
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494
Query: 296 DYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
L L+M +N L + L+ SH L L
Sbjct: 495 TLHRLQLLNMSHNNL---LFLDSSHYNQLYSL 523
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 179 SSLRRLDLSYNK---LTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSEN 235
+SLR LDLS+N ++ + L L L +++ L V ++F L +L +++S
Sbjct: 371 NSLRHLDLSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 429
Query: 236 SFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFA 295
+ + F L +L + ++ N+ +S ++L +DL +++ F
Sbjct: 430 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 489
Query: 296 DYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327
L L+M +N L + L+ SH L L
Sbjct: 490 TLHRLQLLNMSHNNL---LFLDSSHYNQLYSL 518
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 179 SSLRRLDLSYNKLTGSLPKLP---PNLSELALKNNVLSGVITKNSFDGLTQLEVIELSEN 235
S ++ DLS +K+ L + +L +L L N ++ I N+F GLT L+ + L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLKELALDTN 333
Query: 236 SFTGTLEAWFFLLPALQQVNLSNN 259
+ F L +LQ++ L N
Sbjct: 334 QLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|1D2I|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1D2I|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1ES8|A Chain A, Crystal Structure Of Free Bglii
Length = 223
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 269 PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMR 306
P+ R D + D+ F K + V F++YP L + ++R
Sbjct: 71 PIPKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVR 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,154,881
Number of Sequences: 62578
Number of extensions: 396398
Number of successful extensions: 1420
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 249
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)