Query 016534
Match_columns 388
No_of_seqs 349 out of 4272
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-43 2.4E-48 375.7 27.7 346 25-387 24-374 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-36 2.4E-41 322.4 20.8 292 93-386 150-445 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.9E-31 4.1E-36 247.7 1.6 302 82-386 124-433 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.9E-30 2.1E-34 236.3 4.2 295 83-382 78-405 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.5E-29 1.8E-33 231.8 -4.0 290 82-380 77-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.7E-29 5.9E-34 235.1 -7.8 292 83-382 32-352 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 4.7E-28 1E-32 216.2 -8.7 285 87-382 141-541 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 3.1E-23 6.7E-28 207.4 17.3 261 85-387 203-463 (788)
9 PLN03210 Resistant to P. syrin 99.9 2.3E-22 4.9E-27 214.6 24.3 286 83-380 611-904 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 5.1E-26 1.1E-30 203.2 -10.4 263 84-381 46-309 (565)
11 PLN03210 Resistant to P. syrin 99.9 3.1E-21 6.7E-26 206.0 23.7 290 84-387 590-887 (1153)
12 PRK15370 E3 ubiquitin-protein 99.9 1.1E-21 2.3E-26 197.4 18.9 323 23-382 56-428 (754)
13 KOG0618 Serine/threonine phosp 99.9 1.7E-24 3.7E-29 211.2 -4.2 87 84-174 46-132 (1081)
14 PRK15370 E3 ubiquitin-protein 99.9 3.6E-21 7.7E-26 193.6 12.2 247 83-359 178-428 (754)
15 PRK15387 E3 ubiquitin-protein 99.8 5.4E-20 1.2E-24 184.3 17.7 239 107-387 201-439 (788)
16 cd00116 LRR_RI Leucine-rich re 99.8 2E-21 4.3E-26 180.6 0.9 254 88-359 3-291 (319)
17 KOG0618 Serine/threonine phosp 99.8 4.1E-22 8.8E-27 194.8 -4.8 264 107-380 219-487 (1081)
18 KOG4237 Extracellular matrix p 99.8 2.4E-21 5.1E-26 173.2 -4.7 275 82-359 66-359 (498)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-20 2.9E-25 174.9 -2.0 252 111-384 2-293 (319)
20 KOG4237 Extracellular matrix p 99.7 4.4E-19 9.6E-24 158.7 -6.8 227 82-310 90-358 (498)
21 KOG0617 Ras suppressor protein 99.6 1.6E-18 3.4E-23 138.6 -5.8 155 82-263 32-187 (264)
22 KOG0617 Ras suppressor protein 99.6 1.6E-18 3.6E-23 138.5 -5.8 156 105-287 31-186 (264)
23 PLN03150 hypothetical protein; 99.6 3.2E-15 6.9E-20 149.9 14.1 159 24-193 366-529 (623)
24 COG4886 Leucine-rich repeat (L 99.3 2.4E-12 5.1E-17 123.3 7.7 195 111-315 97-294 (394)
25 COG4886 Leucine-rich repeat (L 99.3 3.5E-12 7.7E-17 122.1 7.2 197 134-340 96-295 (394)
26 KOG1909 Ran GTPase-activating 99.3 2E-13 4.3E-18 121.1 -2.2 244 83-334 30-310 (382)
27 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.6E-18 128.6 -3.9 174 105-288 73-248 (722)
28 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4E-17 112.9 1.4 137 220-363 279-416 (490)
29 KOG3207 Beta-tubulin folding c 99.2 1.2E-12 2.7E-17 119.3 -0.1 209 128-337 118-341 (505)
30 KOG0532 Leucine-rich repeat (L 99.2 3.6E-13 7.8E-18 126.4 -4.8 191 84-285 76-271 (722)
31 KOG1909 Ran GTPase-activating 99.2 1.3E-12 2.7E-17 116.1 -1.9 250 100-359 23-311 (382)
32 PLN03150 hypothetical protein; 99.2 6.5E-11 1.4E-15 119.0 9.4 107 251-358 420-527 (623)
33 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.3E-17 118.7 -2.3 206 152-359 118-339 (505)
34 PF14580 LRR_9: Leucine-rich r 99.1 4.6E-11 1E-15 99.4 4.5 87 220-306 59-148 (175)
35 PF14580 LRR_9: Leucine-rich r 99.1 3E-11 6.6E-16 100.4 3.2 126 221-352 15-146 (175)
36 KOG1259 Nischarin, modulator o 99.1 2.2E-11 4.8E-16 106.2 0.4 204 172-385 207-415 (490)
37 KOG0531 Protein phosphatase 1, 99.0 4E-11 8.7E-16 115.2 -1.3 243 106-385 71-321 (414)
38 KOG4658 Apoptotic ATPase [Sign 99.0 5.7E-10 1.2E-14 115.0 5.7 106 83-189 545-652 (889)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.8E-14 112.3 5.4 148 83-233 523-676 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.4E-14 73.7 3.2 59 275-333 2-60 (61)
41 KOG1859 Leucine-rich repeat pr 98.8 2.8E-11 6E-16 116.8 -8.9 128 225-359 164-292 (1096)
42 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.5E-14 72.5 2.9 60 107-166 1-60 (61)
43 KOG0531 Protein phosphatase 1, 98.8 7.8E-10 1.7E-14 106.4 -1.3 219 128-381 69-289 (414)
44 KOG2120 SCF ubiquitin ligase, 98.5 6.1E-10 1.3E-14 97.3 -8.3 178 201-378 186-372 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.5 1E-08 2.2E-13 88.6 -1.9 181 83-263 30-256 (388)
46 KOG2982 Uncharacterized conser 98.5 4.5E-08 9.8E-13 85.7 1.8 182 82-263 70-263 (418)
47 KOG1859 Leucine-rich repeat pr 98.5 2.6E-09 5.6E-14 103.6 -7.1 170 200-381 109-291 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.4 5.4E-09 1.2E-13 91.4 -6.1 174 132-308 186-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.4 2E-08 4.2E-13 78.1 -2.9 135 226-365 28-166 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.4 5E-08 1.1E-12 84.4 -1.0 247 103-359 26-316 (388)
51 KOG4579 Leucine-rich repeat (L 98.2 4.6E-08 1E-12 76.1 -4.3 123 219-345 47-169 (177)
52 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.4E-11 76.3 2.5 184 104-287 68-262 (418)
53 PRK15386 type III secretion pr 98.1 1.5E-05 3.3E-10 74.7 9.0 89 106-208 51-140 (426)
54 PF08263 LRRNT_2: Leucine rich 98.1 7E-06 1.5E-10 51.4 4.5 41 29-79 2-43 (43)
55 PRK15386 type III secretion pr 98.0 3.9E-05 8.4E-10 72.0 10.0 136 151-308 48-187 (426)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.7E-10 49.8 3.3 36 275-311 2-37 (44)
57 KOG1644 U2-associated snRNP A' 97.8 4.3E-05 9.3E-10 63.8 6.3 104 202-308 44-150 (233)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.6E-10 49.0 3.7 36 108-144 2-37 (44)
59 KOG4341 F-box protein containi 97.8 3.6E-07 7.8E-12 83.7 -6.8 290 83-372 138-455 (483)
60 KOG1644 U2-associated snRNP A' 97.7 7.7E-05 1.7E-09 62.3 5.7 101 250-354 43-148 (233)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.7E-10 80.3 1.9 95 220-316 168-268 (699)
62 KOG3665 ZYG-1-like serine/thre 97.5 4.4E-05 9.5E-10 77.4 2.6 138 200-340 122-268 (699)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00071 1.5E-08 53.5 7.2 108 218-331 5-112 (129)
64 KOG4341 F-box protein containi 97.3 5.3E-06 1.1E-10 76.2 -6.8 273 107-379 138-436 (483)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.2E-09 62.3 2.0 86 220-305 60-150 (260)
66 PF13306 LRR_5: Leucine rich r 97.1 0.0013 2.8E-08 52.0 6.4 123 243-372 6-129 (129)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00035 7.7E-09 60.7 1.7 109 241-354 35-151 (260)
68 KOG2123 Uncharacterized conser 96.7 6.3E-05 1.4E-09 65.8 -4.8 98 83-185 19-123 (388)
69 KOG2123 Uncharacterized conser 96.7 4.8E-05 1E-09 66.6 -5.8 98 202-304 21-123 (388)
70 KOG1947 Leucine rich repeat pr 95.7 0.0018 3.9E-08 63.5 -1.4 107 154-261 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 31.6 0.4 18 324-342 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0081 1.8E-07 31.3 0.7 18 109-127 2-19 (22)
73 KOG4308 LRR-containing protein 94.3 0.0001 2.2E-09 71.6 -14.2 68 221-288 228-304 (478)
74 KOG4308 LRR-containing protein 94.2 0.00047 1E-08 67.0 -9.9 180 85-264 89-305 (478)
75 KOG1947 Leucine rich repeat pr 93.8 0.0041 8.9E-08 61.0 -4.4 30 342-371 358-389 (482)
76 PF13504 LRR_7: Leucine rich r 93.3 0.054 1.2E-06 26.2 1.3 13 348-360 3-15 (17)
77 KOG0473 Leucine-rich repeat pr 90.0 0.0066 1.4E-07 52.1 -6.7 86 271-359 39-124 (326)
78 KOG3864 Uncharacterized conser 89.9 0.045 9.8E-07 46.1 -1.8 79 85-163 103-184 (221)
79 KOG3864 Uncharacterized conser 89.6 0.043 9.3E-07 46.2 -2.2 82 226-307 102-185 (221)
80 KOG4242 Predicted myosin-I-bin 89.1 2.4 5.2E-05 40.7 8.5 109 82-192 164-281 (553)
81 KOG0473 Leucine-rich repeat pr 88.2 0.0084 1.8E-07 51.5 -7.3 83 82-167 41-123 (326)
82 smart00370 LRR Leucine-rich re 87.8 0.52 1.1E-05 25.4 2.1 14 275-288 3-16 (26)
83 smart00369 LRR_TYP Leucine-ric 87.8 0.52 1.1E-05 25.4 2.1 14 275-288 3-16 (26)
84 PF13516 LRR_6: Leucine Rich r 85.1 0.33 7.1E-06 25.6 0.3 16 225-240 2-17 (24)
85 smart00364 LRR_BAC Leucine-ric 77.6 1.7 3.7E-05 23.5 1.4 18 346-363 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 70.4 4 8.7E-05 22.1 1.8 14 250-263 3-16 (26)
87 smart00368 LRR_RI Leucine rich 65.6 5.6 0.00012 21.9 1.8 14 274-287 2-15 (28)
88 KOG4242 Predicted myosin-I-bin 61.5 37 0.00081 32.9 7.4 61 108-168 215-281 (553)
89 KOG3763 mRNA export factor TAP 51.2 7.4 0.00016 38.2 1.1 65 272-338 216-286 (585)
90 KOG3763 mRNA export factor TAP 48.4 7.6 0.00016 38.1 0.7 12 273-284 243-254 (585)
91 smart00367 LRR_CC Leucine-rich 45.4 16 0.00034 19.5 1.4 11 107-117 2-12 (26)
92 PF07172 GRP: Glycine rich pro 44.0 26 0.00055 26.0 2.8 16 7-22 3-18 (95)
93 PF11466 Doppel: Prion-like pr 25.4 72 0.0016 17.8 1.9 22 1-22 1-23 (30)
94 PRK09718 hypothetical protein; 23.0 2.6E+02 0.0056 27.5 6.3 12 347-358 229-240 (512)
95 TIGR00864 PCC polycystin catio 22.0 52 0.0011 39.2 1.8 32 280-311 1-32 (2740)
96 TIGR00864 PCC polycystin catio 21.1 62 0.0014 38.6 2.2 34 255-289 1-34 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-43 Score=375.70 Aligned_cols=346 Identities=29% Similarity=0.414 Sum_probs=258.3
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCceEEEEeCCCCCCCCCccccc
Q 016534 25 ALTSPQDISALKAFKASIKPSSIQPWSCLASWDFTATDPCALPRRTHFTCGLLCSSDSTRVTQLTLDPAGYSGQLTPLIS 104 (388)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~~~~C~~~~~~~~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~ 104 (388)
+..+++|+.||++||..+. ++++.+.+|+.. .|+|.| .|+.|+. .++|+.|+++++++.|.++..+.
T Consensus 24 ~~~~~~~~~~l~~~~~~~~----~~~~~~~~w~~~-~~~c~w-------~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~ 90 (968)
T PLN00113 24 SMLHAEELELLLSFKSSIN----DPLKYLSNWNSS-ADVCLW-------QGITCNN-SSRVVSIDLSGKNISGKISSAIF 90 (968)
T ss_pred cCCCHHHHHHHHHHHHhCC----CCcccCCCCCCC-CCCCcC-------cceecCC-CCcEEEEEecCCCccccCChHHh
Confidence 4447789999999999983 455667899765 789999 8999985 57899999999999999999999
Q ss_pred CCCCCCEEEccCCcCCccCccccc-CCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASIS-SLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRR 183 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 183 (388)
.+++|++|+|++|.+++.+|..+. ++++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 999999999999999988887655 788888888888888776664 35677777777777777777777777777777
Q ss_pred EEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCC
Q 016534 184 LDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNT 260 (388)
Q Consensus 184 L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 260 (388)
|++++|.+.+.+|.. .++|++|++++|.+.+.+ +..++++++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 777777776666542 266777777777776665 5667777777777777777777777777777777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCc
Q 016534 261 LTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPI 340 (388)
Q Consensus 261 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 340 (388)
+++ .+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.
T Consensus 248 l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 248 LTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred ecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 766 3566666677777777777777766666666677777777777777767776666667777777777776666666
Q ss_pred cCcCCCCCcEEEcCCCcCC-CCCCCCCCCCCCccccccccCCCCCCCC
Q 016534 341 GFFTGDVPVAGSLGDNCLQ-GCPVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 341 ~~~~~~~L~~l~l~~n~l~-~~p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
.+..+++|+.|++++|.+. .+|..++.+++|+.|++++|++.+.+|+
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 6666667777777766665 4566666666666666666666665553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=322.41 Aligned_cols=292 Identities=32% Similarity=0.405 Sum_probs=135.6
Q ss_pred CCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcC
Q 016534 93 AGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLP 172 (388)
Q Consensus 93 ~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 172 (388)
|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 33333344444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCC
Q 016534 173 KNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLP 249 (388)
Q Consensus 173 ~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 249 (388)
..+..+++|++|++++|.+.+.+|.. .++|++|++++|.+.+.+ +..+.++++|++|++++|.+.+.+|..+..++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 44444444444444444444433321 134444444444444433 33444444444555544444444444444444
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeC
Q 016534 250 ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFL 329 (388)
Q Consensus 250 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 329 (388)
+|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 309 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 309 NLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCcEEECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 55555555554444 23444444455555555555555444544445555555555555554444444444444444444
Q ss_pred cCCcCccCCCccCcCCCCCcEEEcCCCcCC-CCCCCCCCCCCCccccccccCCCCCCC
Q 016534 330 DGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ-GCPVSSQLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 330 s~n~l~~~~p~~~~~~~~L~~l~l~~n~l~-~~p~~~~~~~~L~~l~l~~n~~~~~ip 386 (388)
++|.+.+.+|..+..+++|+.+++++|+++ .+|..+..++.|+.+++++|.+.+.+|
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 444444444444444444555555544444 234444444444444444444444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-31 Score=247.66 Aligned_cols=302 Identities=25% Similarity=0.253 Sum_probs=245.2
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
.++++.|+|.+|-++..-...++.++.|+.|||+.|.|+..--..|..-.++++|+|++|+++..-...|..+.+|.+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 46677777777777766666777788888888888888765555666667788888888888877777888888888888
Q ss_pred ccCCcCCCCcC-ccccCCCCCcEEEcccCcCC---CCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC
Q 016534 162 LSYNSLSGSLP-KNTFLMSSLRRLDLSYNKLT---GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237 (388)
Q Consensus 162 L~~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 237 (388)
|+.|.++ .+| ..|.++++|+.|++..|++. |.-..-.++|+.|.+..|.+...- ...|-.+.++++|+++.|++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchh
Confidence 8888888 454 45555888888888888765 222223478888888888887554 56788889999999999999
Q ss_pred CCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcc
Q 016534 238 TGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLE 317 (388)
Q Consensus 238 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 317 (388)
+..-..|+..++.|+.|+++.|.+..+. +..+..+++|++|+|++|+++...+..|..+..|++|+|++|.+....-..
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 8777889999999999999999999875 566778999999999999999988999999999999999999998655667
Q ss_pred ccCCCCCcEEeCcCCcCccCCCc---cCcCCCCCcEEEcCCCcCCCCCCC-CCCCCCCccccccccCCCCCCC
Q 016534 318 FSHKKSLKRLFLDGNFLIGKAPI---GFFTGDVPVAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 318 ~~~l~~L~~L~Ls~n~l~~~~p~---~~~~~~~L~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~ip 386 (388)
|..+++|++|||++|.++..+.+ .+..+++|+.|++.+|++..||.. +.++..|+.||+.+|.+-+.=|
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence 78889999999999998876654 455679999999999999988854 7889999999999998765544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=9.9e-30 Score=236.26 Aligned_cols=295 Identities=26% Similarity=0.263 Sum_probs=162.0
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
+.++.|++++|.+...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.++..-.+.+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34566777777777665666667777777777777665 45554444445777777777666555566666666666666
Q ss_pred cCCcCCCCcCc-cccCCCCCcEEEcccCcCCC----CCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC
Q 016534 163 SYNSLSGSLPK-NTFLMSSLRRLDLSYNKLTG----SLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237 (388)
Q Consensus 163 ~~n~l~~~~p~-~l~~~~~L~~L~l~~n~l~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 237 (388)
+.|.++ .+|. .+..-.++++|++++|+++. .+..+ .+|..|.+++|+++. +++..|.++++|+.|++..|++
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccc-cCHHHhhhcchhhhhhccccce
Confidence 666666 3332 33344566666666666652 22222 355566666666553 2345555566666666655555
Q ss_pred CCcchHHhhcCC------------------------CCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccc
Q 016534 238 TGTLEAWFFLLP------------------------ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVN 293 (388)
Q Consensus 238 ~~~~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 293 (388)
.-.---.|..++ ++++|+|..|++..+. ..++.++..|+.|++++|.|..+-++.
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhhhheeecch
Confidence 422223344444 4444444444444321 223334555555555555555554555
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCC----CCCCCCCC
Q 016534 294 FADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGC----PVSSQLCS 369 (388)
Q Consensus 294 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~----p~~~~~~~ 369 (388)
+.-+++|++|+|++|+++..-+.+|..+..|++|+|+.|.+.-.--..|..+++|+.||++.|.+..+ ..-+..++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 55555555555555555544444555555555555555555433333344445666666666655421 22245566
Q ss_pred CCccccccccCCC
Q 016534 370 PSQKSYSVCKQAY 382 (388)
Q Consensus 370 ~L~~l~l~~n~~~ 382 (388)
+|++|++.+|++.
T Consensus 393 ~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 393 SLRKLRLTGNQLK 405 (873)
T ss_pred hhhheeecCceee
Confidence 6666666666654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=8.5e-29 Score=231.82 Aligned_cols=290 Identities=27% Similarity=0.314 Sum_probs=203.8
Q ss_pred CCceEEEEeCCCCCCC-CCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEE
Q 016534 82 STRVTQLTLDPAGYSG-QLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (388)
.++++++.+..|++.. -+|+.+..+..|+.|||++|.+. ..|..+..-+++-.|+|++|.+..+..+-|-++..|-.|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 3556666777776643 36777777777777777777776 567777777777777777777773333334567777777
Q ss_pred EccCCcCCCCcCccccCCCCCcEEEcccCcCCC----CCCCCCCCCCEEEccCCccC-cccCccccCCCCccCEEEccCC
Q 016534 161 DLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTG----SLPKLPPNLSELALKNNVLS-GVITKNSFDGLTQLEVIELSEN 235 (388)
Q Consensus 161 ~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~----~~~~~~~~L~~L~l~~n~~~-~~~~~~~l~~l~~L~~L~l~~n 235 (388)
+|++|++. .+|..+..+..|+.|++++|.+.- .+|.. .+|+.|.+++.+-+ ..+ |.++..+.+|..+|+|.|
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl~N~-Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTLDNI-PTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchhhcC-CCchhhhhhhhhcccccc
Confidence 77777776 677777777777777777776541 23332 56677777765533 223 556777777778888877
Q ss_pred cCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc-ccC
Q 016534 236 SFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR-GGI 314 (388)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~ 314 (388)
.+. .+|+.+.++++|+.|+|++|+++.. ....+...+|++|+++.|+++. .|..+..+++|+.|.+.+|+++ .-+
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL--~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITEL--NMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceeee--eccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCC
Confidence 776 6777777777888888888877763 2233446777778888888774 6777777777787777777776 356
Q ss_pred CccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccC
Q 016534 315 PLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 315 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~ 380 (388)
|..++.+..|+.+..++|.+ .-+|++++.|..|+.|.++.|++-.+|+.+.-++.|++||+..|.
T Consensus 309 PSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence 77777777777777777765 456777777777777778777777777777777777777777764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.7e-29 Score=235.11 Aligned_cols=292 Identities=25% Similarity=0.312 Sum_probs=199.6
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC-CCchhhcCCCCCCEEE
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS-SVPDSLTQLKNLDSLD 161 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ 161 (388)
.+++.|.|....+. .+|..++.+..|++|.+++|++. .+-.+++.++.|+.+.+..|.+.. -+|+.+..+..|.+|+
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 45566666555554 45556666666666666666554 223344555555555555555432 2444455555555555
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCC------------------------CCCCCC--CCCCCEEEccCCccCcc
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLT------------------------GSLPKL--PPNLSELALKNNVLSGV 215 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~------------------------~~~~~~--~~~L~~L~l~~n~~~~~ 215 (388)
|++|++. ..|..+..-+++..|++++|++. ...|.. ...|++|.+++|.+...
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH
Confidence 5555555 55555555555555555555554 222211 13455555555554422
Q ss_pred cCccccCCCCccCEEEccCCcCC-CcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc
Q 016534 216 ITKNSFDGLTQLEVIELSENSFT-GTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNF 294 (388)
Q Consensus 216 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 294 (388)
- ...+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+.. +|+.+-++.+|+.|+|++|+++. .....
T Consensus 189 Q-LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~ite-L~~~~ 264 (1255)
T KOG0444|consen 189 Q-LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKITE-LNMTE 264 (1255)
T ss_pred H-HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCceee-eeccH
Confidence 1 223334445555555554433 3567777778888999999998885 57777788999999999999986 44456
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCc-cCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCcc
Q 016534 295 ADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLI-GKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQK 373 (388)
Q Consensus 295 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~ 373 (388)
+.+.+|++|+++.|+++ .+|..++.+++|+.|.+.+|+++ .-+|.+|+.+..|+.+..++|.+.-+|+.++.|.+|+.
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQK 343 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHH
Confidence 77889999999999999 99999999999999999999887 35899999999999999999999999999999999999
Q ss_pred ccccccCCC
Q 016534 374 SYSVCKQAY 382 (388)
Q Consensus 374 l~l~~n~~~ 382 (388)
|.++||++.
T Consensus 344 L~L~~NrLi 352 (1255)
T KOG0444|consen 344 LKLDHNRLI 352 (1255)
T ss_pred hccccccee
Confidence 999999864
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=4.7e-28 Score=216.17 Aligned_cols=285 Identities=24% Similarity=0.258 Sum_probs=175.7
Q ss_pred EEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCc
Q 016534 87 QLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNS 166 (388)
Q Consensus 87 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 166 (388)
.++..+|+++ ..|+.+.++..|..+++.+|.+....|..+ +++.|++|+...|-+. .+|+.++.+.+|+.|++..|+
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 3344444444 455555566666666666666653333333 3666666666666655 666666667777777777776
Q ss_pred CCCCcCccccCCCCCcEEEcccCcCCCCCC----CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 167 LSGSLPKNTFLMSSLRRLDLSYNKLTGSLP----KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 167 l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
+. .+| .|..+..|++++++.|.+. .+| +..+++..||++.|++... |..+..+.+|++||+++|.++ ..|
T Consensus 218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~--Pde~clLrsL~rLDlSNN~is-~Lp 291 (565)
T KOG0472|consen 218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEV--PDEICLLRSLERLDLSNNDIS-SLP 291 (565)
T ss_pred cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccC--chHHHHhhhhhhhcccCCccc-cCC
Confidence 65 555 5666666777777666654 222 2346778888888888754 667777788888888888877 455
Q ss_pred HHhhcCCCCCEEEccCCCCCCC----------------------------------------------------------
Q 016534 243 AWFFLLPALQQVNLSNNTLTRV---------------------------------------------------------- 264 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~---------------------------------------------------------- 264 (388)
..++++ .|+.|.+.+|.+..+
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 566666 666666666654332
Q ss_pred -----CCCCCC-C--CCCCCCEEEccCCcC-----------------------CCCCcccccCCCCCCEEEccCCccccc
Q 016534 265 -----GISKPV-D--GRSDLVAVDLGFNKI-----------------------QGYLPVNFADYPMLSSLSMRYNRLRGG 313 (388)
Q Consensus 265 -----~~~~~~-~--~~~~L~~L~L~~n~l-----------------------~~~~~~~l~~l~~L~~L~L~~n~l~~~ 313 (388)
.+|... . .-.-....+++.|++ .+.+|..+..+++|..|++++|-+. .
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~ 449 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-D 449 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-h
Confidence 000000 0 000012222222222 1223333444555555555555555 5
Q ss_pred CCccccCCCCCcEEeCcCC-----------------------cCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCC
Q 016534 314 IPLEFSHKKSLKRLFLDGN-----------------------FLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSP 370 (388)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~n-----------------------~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~ 370 (388)
+|..++.+..|+.++++.| ++....|..+.++.+|..||+.+|.+..+|+.+++|.+
T Consensus 450 LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN 529 (565)
T ss_pred cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence 5555555555555555554 45444555688899999999999999999999999999
Q ss_pred CccccccccCCC
Q 016534 371 SQKSYSVCKQAY 382 (388)
Q Consensus 371 L~~l~l~~n~~~ 382 (388)
|+.|++++|.|.
T Consensus 530 L~hLeL~gNpfr 541 (565)
T KOG0472|consen 530 LRHLELDGNPFR 541 (565)
T ss_pred eeEEEecCCccC
Confidence 999999999997
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=3.1e-23 Score=207.37 Aligned_cols=261 Identities=27% Similarity=0.310 Sum_probs=209.4
Q ss_pred eEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccC
Q 016534 85 VTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSY 164 (388)
Q Consensus 85 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 164 (388)
-..|+++.++++ .+|+.+. ++|+.|++.+|+++. +|. ..++|++|++++|.++ .+|.. .++|++|++.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 467899999998 6887765 489999999999984 554 2578999999999999 55643 47899999999
Q ss_pred CcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHH
Q 016534 165 NSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW 244 (388)
Q Consensus 165 n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 244 (388)
|.++ .+|.. .++|+.|++++|+++ .+|..+++|+.|++++|.+.+. +.. ...|+.|++++|.+++ +|..
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~p~~L~~LdLS~N~L~~L--p~l---p~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASL--PAL---PSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-cccccccccceeECCCCccccC--CCC---cccccccccccCcccc-cccc
Confidence 9987 56653 367889999999998 5677778999999999998863 322 2468889999999974 5532
Q ss_pred hhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 016534 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSL 324 (388)
Q Consensus 245 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 324 (388)
..+|+.|++++|+++. +|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|.. .++|
T Consensus 341 ---p~~Lq~LdLS~N~Ls~--LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L 404 (788)
T PRK15387 341 ---PSGLQELSVSDNQLAS--LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSEL 404 (788)
T ss_pred ---ccccceEecCCCccCC--CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCC
Confidence 2579999999999997 3542 4678899999999986 5543 357999999999999 46643 3579
Q ss_pred cEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 016534 325 KRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 325 ~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
+.|++++|++++ +|.. ...|+.|++++|+++.+|..++.+++|+.+++++|++.+.+|.
T Consensus 405 ~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 405 KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CEEEccCCcCCC-CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 999999999875 6643 2467889999999999999999999999999999999988653
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.3e-22 Score=214.61 Aligned_cols=286 Identities=20% Similarity=0.175 Sum_probs=180.5
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.+++.|++.++.+. .++..+..+++|+.|+|+++.....+| .++.+++|++|++++|.....+|..+.++++|++|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 34555555555544 344455666667777776654334454 3566667777777666554566666777777777777
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC-----
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF----- 237 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l----- 237 (388)
++|...+.+|..+ .+++|++|++++|...+.+|..+.+|++|++.+|.+.. + |..+ .+++|++|++.++..
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-l-P~~~-~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-F-PSNL-RLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc-c-cccc-cccccccccccccchhhccc
Confidence 7655444566544 56677777777666555566666677777777776543 2 2222 355566665554321
Q ss_pred --CCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCC
Q 016534 238 --TGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIP 315 (388)
Q Consensus 238 --~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 315 (388)
....+......++|+.|++++|.... .+|..++.+++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 11112222334577778887776555 467777778888888888775444556554 57778888888775554555
Q ss_pred ccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCC-cCCCCCCCCCCCCCCccccccccC
Q 016534 316 LEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDN-CLQGCPVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 316 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n-~l~~~p~~~~~~~~L~~l~l~~n~ 380 (388)
.. ..+|+.|+|++|.++ .+|..+..+++|+.|++++| .+..+|..+..+++|+.+++++|.
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 43 256778888888775 46777778888888888774 567777777777777777777654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=5.1e-26 Score=203.20 Aligned_cols=263 Identities=25% Similarity=0.298 Sum_probs=193.7
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
.+..+.+++|.+. .+.+.+.++..|.+|++.+|.+. ..|++++.+..++.++.+.|++. .+|+.++.+.+|.+++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3567788888877 45566889999999999999987 67888999999999999999998 889999999999999999
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchH
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA 243 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 243 (388)
.|.+. .+|+.++.+-.+..++..+|+++.. |..+..+.++..+++.+|+++...|.
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-----------------------p~~~~~~~~l~~l~~~~n~l~~l~~~ 178 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQISSL-----------------------PEDMVNLSKLSKLDLEGNKLKALPEN 178 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccccC-----------------------chHHHHHHHHHHhhccccchhhCCHH
Confidence 99998 8888899999999999988888732 44555566666677777766644444
Q ss_pred HhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcccc-CCC
Q 016534 244 WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS-HKK 322 (388)
Q Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~ 322 (388)
.+. ++.|++|+...|.+.. +|..++++.+|..|++..|++.. .| .|..|..|++|++..|.+. .+|.... .+.
T Consensus 179 ~i~-m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~ 252 (565)
T KOG0472|consen 179 HIA-MKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLN 252 (565)
T ss_pred HHH-HHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccc
Confidence 443 6667777777666664 46666667777777777777664 34 6666677777777777666 5554433 666
Q ss_pred CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCC
Q 016534 323 SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQA 381 (388)
Q Consensus 323 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~ 381 (388)
++..|||..|+++ +.|+.++-+.+|.++|+++|.++++|+.++++ .|+.|-+++|.+
T Consensus 253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 6777777777664 46666666677777777777777777777776 677777777654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.1e-21 Score=205.98 Aligned_cols=290 Identities=18% Similarity=0.120 Sum_probs=203.9
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
.++.|.+.++.+. .+|..+ .+.+|++|++.+|.+. .++..+..+++|++|+++++...+.+| .+..+++|++|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 3555555555443 344444 4567777777777765 456666777778888887765444555 36777788888887
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC--CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcc
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL--PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTL 241 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 241 (388)
+|.....+|..+..+++|+.|++++|...+.+|.. .++|++|++++|.....+ +. ..++|++|++++|.+. .+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~-p~---~~~nL~~L~L~~n~i~-~l 740 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF-PD---ISTNISWLDLDETAIE-EF 740 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc-cc---ccCCcCeeecCCCccc-cc
Confidence 77665677777777788888888776544455542 367778888777654444 22 2356777888877765 45
Q ss_pred hHHhhcCCCCCEEEccCCCCCCC-----CC-CCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCC
Q 016534 242 EAWFFLLPALQQVNLSNNTLTRV-----GI-SKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIP 315 (388)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~l~~~-----~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 315 (388)
|..+ .+++|++|.+.++....+ .+ +.....+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 5443 466777777766432111 00 1112235789999999998888899999999999999999987666888
Q ss_pred ccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 016534 316 LEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 316 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
... .+++|+.|++++|.....+|.. .++++.|++++|.++.+|..+..+++|+.|++++|.-...+|.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 766 7899999999998766666643 3678999999999999999999999999999987554444654
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=1.1e-21 Score=197.40 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=211.2
Q ss_pred hhcCCChhHHHHHHHHHHhcCCCCCCCCC--CCCCCCCCCCCCCCCCC-----------CCCCccceeeCCCCCceEEEE
Q 016534 23 AVALTSPQDISALKAFKASIKPSSIQPWS--CLASWDFTATDPCALPR-----------RTHFTCGLLCSSDSTRVTQLT 89 (388)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~W~~~~~~~C~~~~-----------~~~~~~g~~c~~~~~~l~~L~ 89 (388)
-.+++.+++.+.+.++...+.. +++. .-.+|+.. .|+|.-.. .++ ..|.|.. ..|+++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~---p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~--~tv~~~~--~~vt~l~ 127 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAF---PAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEG--YTVEGGG--KSVTYTR 127 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC---CchhhccccccCCC-CcccccCCcchhhheeeecCCc--eEEecCC--Ccccccc
Confidence 3467889999999988887731 2221 12448876 88997644 122 2366654 4555555
Q ss_pred eCCCCCCCC---------------------Cc-------ccc-----cCCCCCCEEEccCCcCCccCcccccCCCCCCEE
Q 016534 90 LDPAGYSGQ---------------------LT-------PLI-----SQLTQLTILDLSDNYFFGPIPASISSLSNLQML 136 (388)
Q Consensus 90 l~~~~l~~~---------------------~~-------~~l-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 136 (388)
..+...... .+ ..+ .-..+...|+++++.++ .+|..+. +.|+.|
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L 204 (754)
T PRK15370 128 VTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTL 204 (754)
T ss_pred cccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEE
Confidence 443211100 00 001 01134678888888777 4565443 468888
Q ss_pred eeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCccc
Q 016534 137 TLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVI 216 (388)
Q Consensus 137 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 216 (388)
++++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+......++.+|+.|++++|++.. +
T Consensus 205 ~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~-L 277 (754)
T PRK15370 205 ILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHNKISC-L 277 (754)
T ss_pred EecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCCccCc-c
Confidence 88888888 5666553 57888888888887 6676543 468888888888773322344678888888888874 4
Q ss_pred CccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccC
Q 016534 217 TKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFAD 296 (388)
Q Consensus 217 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 296 (388)
|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++.+ |..+ .++|+.|++++|.+++ +|..+.
T Consensus 278 -P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~- 345 (754)
T PRK15370 278 -PENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL--PETL--PPGLKTLEAGENALTS-LPASLP- 345 (754)
T ss_pred -ccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC--Cccc--cccceeccccCCcccc-CChhhc-
Confidence 43332 478888888888874 444332 4678888888888763 4322 3678888888888876 454443
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCC----CCCCCc
Q 016534 297 YPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQ----LCSPSQ 372 (388)
Q Consensus 297 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~----~~~~L~ 372 (388)
++|+.|++++|+++ .+|..+. ++|+.|+|++|.++ .+|..+. ..|+.|++++|++..+|..+. .++.+.
T Consensus 346 -~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 -PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPT 418 (754)
T ss_pred -CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCcc
Confidence 67888888888887 5665543 57888888888877 4565543 357888888888887766543 346677
Q ss_pred cccccccCCC
Q 016534 373 KSYSVCKQAY 382 (388)
Q Consensus 373 ~l~l~~n~~~ 382 (388)
.+++.+|.+.
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8888888764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-24 Score=211.18 Aligned_cols=87 Identities=38% Similarity=0.605 Sum_probs=69.1
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
++.+|++++|.+. ..|..+..+.+|+.|.++.|.+. ..|.+..++.+|++++|.+|.+. ..|.++..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3788888888765 56777788888888888888876 56777788888888888888887 788888888888888888
Q ss_pred CCcCCCCcCcc
Q 016534 164 YNSLSGSLPKN 174 (388)
Q Consensus 164 ~n~l~~~~p~~ 174 (388)
.|.+. .+|.-
T Consensus 123 ~N~f~-~~Pl~ 132 (1081)
T KOG0618|consen 123 FNHFG-PIPLV 132 (1081)
T ss_pred hhccC-CCchh
Confidence 88776 55543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=3.6e-21 Score=193.63 Aligned_cols=247 Identities=25% Similarity=0.407 Sum_probs=192.4
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.+.+.|++++++++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45788999998887 4665553 57999999999998 4666554 58999999999998 6676554 57999999
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
++|.+. .+|..+. .+|++|++++|++......++++|+.|++++|++.+. +..+. ++|+.|++++|.++. +|
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~L--P~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTL--PAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCccccccCCCCcEEECCCCccccC--cccch--hhHHHHHhcCCcccc-CC
Confidence 999998 7787664 5899999999999843334567899999999998853 33332 478999999999984 55
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
..+. ++|++|++++|.++. +|..+ .++|+.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+. .
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred cccc--ccceeccccCCcccc--CChhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 4433 689999999999987 45444 4789999999999985 555553 68999999999999 5666554 3
Q ss_pred CCcEEeCcCCcCccCCCccCc----CCCCCcEEEcCCCcCC
Q 016534 323 SLKRLFLDGNFLIGKAPIGFF----TGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 323 ~L~~L~Ls~n~l~~~~p~~~~----~~~~L~~l~l~~n~l~ 359 (388)
.|+.|++++|++. .+|..+. .++.+..+++.+|++.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6899999999987 4565443 4478899999999875
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=5.4e-20 Score=184.26 Aligned_cols=239 Identities=26% Similarity=0.309 Sum_probs=191.8
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEc
Q 016534 107 TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDL 186 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l 186 (388)
..-..|+++.+.++ .+|..+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 44678999999998 6787775 48999999999999 5664 3589999999999998 66753 468999999
Q ss_pred ccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCC
Q 016534 187 SYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGI 266 (388)
Q Consensus 187 ~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 266 (388)
++|.+. .+|..+.+|+.|++++|++... |. ..++|+.|++++|.+++ +|.. ..+|+.|++++|+++. +
T Consensus 270 s~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~L--P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~--L 337 (788)
T PRK15387 270 FSNPLT-HLPALPSGLCKLWIFGNQLTSL--PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS--L 337 (788)
T ss_pred cCCchh-hhhhchhhcCEEECcCCccccc--cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc--c
Confidence 999987 5677778999999999998853 32 34789999999999985 4432 2468899999999987 4
Q ss_pred CCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCC
Q 016534 267 SKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGD 346 (388)
Q Consensus 267 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 346 (388)
|.. ..+|++|++++|++++ +|.. ..+|+.|++++|.+. .+|... .+|+.|++++|++++ +|.. .+
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---cccceEEecCCcccC-CCCc---cc
Confidence 432 3689999999999997 4432 367889999999999 577543 579999999999985 5543 36
Q ss_pred CCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 016534 347 VPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 347 ~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
.|+.|++++|.++.+|... .+|+.|++++|+++ +||+
T Consensus 403 ~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt-~LP~ 439 (788)
T PRK15387 403 ELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLT-RLPE 439 (788)
T ss_pred CCCEEEccCCcCCCCCcch---hhhhhhhhccCccc-ccCh
Confidence 7999999999999998643 46889999999987 6775
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=2e-21 Score=180.56 Aligned_cols=254 Identities=23% Similarity=0.220 Sum_probs=126.3
Q ss_pred EEeCCCCCC-CCCcccccCCCCCCEEEccCCcCCcc----CcccccCCCCCCEEeeecCcCCC------CCchhhcCCCC
Q 016534 88 LTLDPAGYS-GQLTPLISQLTQLTILDLSDNYFFGP----IPASISSLSNLQMLTLRSNSFSS------SVPDSLTQLKN 156 (388)
Q Consensus 88 L~l~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~ 156 (388)
|+|..+.++ +.....+..++.|+.|+++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 555666665 33444555666677777777776432 44445566667777777766652 23345556667
Q ss_pred CCEEEccCCcCCCCcCccccCCCC---CcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCC-CccCEEEc
Q 016534 157 LDSLDLSYNSLSGSLPKNTFLMSS---LRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGL-TQLEVIEL 232 (388)
Q Consensus 157 L~~L~L~~n~l~~~~p~~l~~~~~---L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l-~~L~~L~l 232 (388)
|++|++++|.+.+..+..+..+.+ |++|++++|++.+... ..+ ...+..+ ++|++|++
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-----------------~~l-~~~l~~~~~~L~~L~L 144 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-----------------RLL-AKGLKDLPPALEKLVL 144 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-----------------HHH-HHHHHhCCCCceEEEc
Confidence 777777777766444444333333 6666666665542100 001 1122333 45555555
Q ss_pred cCCcCCCc----chHHhhcCCCCCEEEccCCCCCCCCC---CCCCCCCCCCCEEEccCCcCCCCC----cccccCCCCCC
Q 016534 233 SENSFTGT----LEAWFFLLPALQQVNLSNNTLTRVGI---SKPVDGRSDLVAVDLGFNKIQGYL----PVNFADYPMLS 301 (388)
Q Consensus 233 ~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~ 301 (388)
++|.+++. ++..+..+++|++|++++|.+++..+ +..+...++|++|++++|.+++.. ...+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 55555421 22333444455555555555543111 111222345555555555554321 22233455566
Q ss_pred EEEccCCcccccCCcccc-----CCCCCcEEeCcCCcCcc----CCCccCcCCCCCcEEEcCCCcCC
Q 016534 302 SLSMRYNRLRGGIPLEFS-----HKKSLKRLFLDGNFLIG----KAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 302 ~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+|++++|.+++.....+. ..+.|+.|++++|.+++ .+...+..++.|+.+++++|.++
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 666665555532221111 12456666666665541 12233334455666666666555
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-22 Score=194.76 Aligned_cols=264 Identities=23% Similarity=0.216 Sum_probs=177.8
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEc
Q 016534 107 TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDL 186 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l 186 (388)
++|+.|+.++|.++...+. ..-.+|++++++.|.++ .+|++++.+.+|+.+...+|.++ .+|..+....+|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 4455555555555522211 11236777777777777 55677777777777777777775 77777777777777777
Q ss_pred ccCcCCCCCCCC--CCCCCEEEccCCccCcccCccccCCCC-ccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCC
Q 016534 187 SYNKLTGSLPKL--PPNLSELALKNNVLSGVITKNSFDGLT-QLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTR 263 (388)
Q Consensus 187 ~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 263 (388)
..|.+.-..|.. ...|+.|++..|.+.... ...+.... +|+.|+.+.|.+.......-...+.|+.|.+.+|.+++
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp-~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP-DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccc-hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 777766322221 256777777777766432 22222222 25556666665542211111224467788888888887
Q ss_pred CCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCc
Q 016534 264 VGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFF 343 (388)
Q Consensus 264 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 343 (388)
- .-+.+.++.+|++|+|+||++...+...+.++..|++|+||+|+++ .+|..+..++.|+.|...+|.+. ..| .+.
T Consensus 374 ~-c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 374 S-CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred c-chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 3 3345677888888888888888777777788888888888888888 78888888888888888888875 345 777
Q ss_pred CCCCCcEEEcCCCcCCC--CCCCCCCCCCCccccccccC
Q 016534 344 TGDVPVAGSLGDNCLQG--CPVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 344 ~~~~L~~l~l~~n~l~~--~p~~~~~~~~L~~l~l~~n~ 380 (388)
.++.|+.+|++.|+++. +|..... +.|++||++||.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 88888888888888873 4433332 678888888886
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=2.4e-21 Score=173.18 Aligned_cols=275 Identities=22% Similarity=0.143 Sum_probs=197.7
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeec-CcCCCCCchhhcCCCCCCEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRS-NSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 160 (388)
....++|.|..|.|+...+.+|+.+++|++|||++|.|+.+-|.+|.+++.|.+|-+.+ |+|+......|+++..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45679999999999977778999999999999999999999999999999988876665 99997777789999999999
Q ss_pred EccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCC----CCCCCCEEEccCCccCccc-----------CccccCCCC
Q 016534 161 DLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPK----LPPNLSELALKNNVLSGVI-----------TKNSFDGLT 225 (388)
Q Consensus 161 ~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~-----------~~~~l~~l~ 225 (388)
.+.-|.+.-.....+..+++|..|.+.+|.+. .+++ -...++.+.+..|.+...- .+..++...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 99999988666778888999999999999876 2222 1145666666665532110 011122222
Q ss_pred ccCEEEccCCcCCCcchHHhhcCCCCCEE--EccCCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 016534 226 QLEVIELSENSFTGTLEAWFFLLPALQQV--NLSNNTLTRVGISK-PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSS 302 (388)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 302 (388)
-..-..+.+.++...-+..|.. .++.+ .++.+.+.....|. .|.++++|++|++++|+++++-...|....++++
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 2222222223332222222211 12222 22222221112222 3667899999999999999888888989999999
Q ss_pred EEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 303 LSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 303 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
|.|..|++...-...|..+..|+.|+|.+|+++-..|..|..+..|..+++-.|.+-
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999988666677888889999999999999888888888888999988877653
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.4e-20 Score=174.94 Aligned_cols=252 Identities=22% Similarity=0.192 Sum_probs=179.8
Q ss_pred EEEccCCcCCc-cCcccccCCCCCCEEeeecCcCCCC----CchhhcCCCCCCEEEccCCcCCC------CcCccccCCC
Q 016534 111 ILDLSDNYFFG-PIPASISSLSNLQMLTLRSNSFSSS----VPDSLTQLKNLDSLDLSYNSLSG------SLPKNTFLMS 179 (388)
Q Consensus 111 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~~~ 179 (388)
.|+|..+.+++ .....+..+..|+.++++++.+++. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 3455566777799999999888542 45556677788888888877652 2233455566
Q ss_pred CCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCC---CccCEEEccCCcCCC----cchHHhhcC-CCC
Q 016534 180 SLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGL---TQLEVIELSENSFTG----TLEAWFFLL-PAL 251 (388)
Q Consensus 180 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l---~~L~~L~l~~n~l~~----~~~~~~~~l-~~L 251 (388)
+|++|++++|.+.+.. +..+..+ ++|++|++++|++++ .+...+..+ ++|
T Consensus 82 ~L~~L~l~~~~~~~~~----------------------~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L 139 (319)
T cd00116 82 GLQELDLSDNALGPDG----------------------CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139 (319)
T ss_pred ceeEEEccCCCCChhH----------------------HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence 7777777777665311 1122222 559999999999873 333456667 899
Q ss_pred CEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCccccc----CCccccC
Q 016534 252 QQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFNKIQGY----LPVNFADYPMLSSLSMRYNRLRGG----IPLEFSH 320 (388)
Q Consensus 252 ~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~ 320 (388)
+.|++++|.+++.. +...+..+++|++|++++|.+++. ++..+...++|+.|++++|.+.+. +...+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 99999999998521 233455678999999999999853 233455667999999999998743 3445667
Q ss_pred CCCCcEEeCcCCcCccCCCccCc-----CCCCCcEEEcCCCcCC-----CCCCCCCCCCCCccccccccCCCCC
Q 016534 321 KKSLKRLFLDGNFLIGKAPIGFF-----TGDVPVAGSLGDNCLQ-----GCPVSSQLCSPSQKSYSVCKQAYGR 384 (388)
Q Consensus 321 l~~L~~L~Ls~n~l~~~~p~~~~-----~~~~L~~l~l~~n~l~-----~~p~~~~~~~~L~~l~l~~n~~~~~ 384 (388)
+++|++|++++|.+++..+..+. ..+.|+.+++++|.++ .+...+..+++|+.+++++|.+...
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 89999999999998874333332 2479999999999986 2344566678899999999998753
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=4.4e-19 Score=158.74 Aligned_cols=227 Identities=26% Similarity=0.272 Sum_probs=182.6
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccC-CcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSD-NYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (388)
..++++|+|+.|+|+..-|.+|..++.|..|-+.+ |+|+..-...|+++..|+.|.+.-|++.....+.|..+++|..|
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 57899999999999998999999999998887777 89998777889999999999999999998888999999999999
Q ss_pred EccCCcCCCCcCc-cccCCCCCcEEEcccCcCCCC--CC-----------------------------------CCCCCC
Q 016534 161 DLSYNSLSGSLPK-NTFLMSSLRRLDLSYNKLTGS--LP-----------------------------------KLPPNL 202 (388)
Q Consensus 161 ~L~~n~l~~~~p~-~l~~~~~L~~L~l~~n~l~~~--~~-----------------------------------~~~~~L 202 (388)
.+.+|.+. .++. .+..+..++.+.+..|.+... +| ++...+
T Consensus 170 slyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 170 SLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred cccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 99999998 5555 677888888888887763210 00 011112
Q ss_pred CEE---EccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEE
Q 016534 203 SEL---ALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAV 279 (388)
Q Consensus 203 ~~L---~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 279 (388)
+.+ -...+...+.-+...|..+++|++|++++|++++.-+.+|.....+++|.|..|++..+. ...|.++..|++|
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTL 327 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceee
Confidence 222 112233333334556889999999999999999888899999999999999999988754 4567789999999
Q ss_pred EccCCcCCCCCcccccCCCCCCEEEccCCcc
Q 016534 280 DLGFNKIQGYLPVNFADYPMLSSLSMRYNRL 310 (388)
Q Consensus 280 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 310 (388)
+|.+|+|+...|..|..+.+|.+|++-.|.+
T Consensus 328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eecCCeeEEEecccccccceeeeeehccCcc
Confidence 9999999988888888888999999877654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=138.59 Aligned_cols=155 Identities=33% Similarity=0.527 Sum_probs=97.4
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
..+++.|.|++|.++ .+|+.++.+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 355666777777666 45666667777777777777665 56666677777777777766666 6666666666677666
Q ss_pred ccCCcCC-CCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCc
Q 016534 162 LSYNSLS-GSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGT 240 (388)
Q Consensus 162 L~~n~l~-~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 240 (388)
+..|.+. ..+|..+..+..|+.|++++|.+. .+ |..++++++|+.|.+..|.+- .
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe----------------------~l-p~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE----------------------IL-PPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc----------------------cC-ChhhhhhcceeEEeeccCchh-h
Confidence 6666655 345555555555555566555543 12 445566666666666666554 5
Q ss_pred chHHhhcCCCCCEEEccCCCCCC
Q 016534 241 LEAWFFLLPALQQVNLSNNTLTR 263 (388)
Q Consensus 241 ~~~~~~~l~~L~~L~L~~n~l~~ 263 (388)
+|..++.++.|++|.+.+|+++-
T Consensus 165 lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeee
Confidence 56666666666666666666654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=138.50 Aligned_cols=156 Identities=29% Similarity=0.443 Sum_probs=73.8
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
++.+++.|.+++|.++ .+|+.+..+.+|+.|++.+|.+. .+|.+++.+++|+.|++.-|++. .+|.+++.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445555556666554 34444555555555555555555 44555555555555555555544 445555555555555
Q ss_pred EcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCC
Q 016534 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRV 264 (388)
Q Consensus 185 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 264 (388)
|+.+|++... .+ |..|..++.|+.|+++.|.+. .+|..++++++|+.|.+.+|++-.
T Consensus 108 dltynnl~e~--------------------~l-pgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~- 164 (264)
T KOG0617|consen 108 DLTYNNLNEN--------------------SL-PGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS- 164 (264)
T ss_pred hccccccccc--------------------cC-CcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-
Confidence 4444444310 01 223333344444444444443 344444444444444444444432
Q ss_pred CCCCCCCCCCCCCEEEccCCcCC
Q 016534 265 GISKPVDGRSDLVAVDLGFNKIQ 287 (388)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~n~l~ 287 (388)
+|..++.+..|++|.+.+|.++
T Consensus 165 -lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 -LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred -CcHHHHHHHHHHHHhcccceee
Confidence 2334444444444444444444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=3.2e-15 Score=149.90 Aligned_cols=159 Identities=34% Similarity=0.464 Sum_probs=131.4
Q ss_pred hcCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeCCC----CCceEEEEeCCCCCCCCC
Q 016534 24 VALTSPQDISALKAFKASIKPSSIQPWSCLASWDFTATDPCALPRRTHFTCGLLCSSD----STRVTQLTLDPAGYSGQL 99 (388)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~~~~C~~~~~~~~~~g~~c~~~----~~~l~~L~l~~~~l~~~~ 99 (388)
.+.+.+.|++||+++|..+. .+. ..+|. .|+|... ..-|.|+.|..+ ..+++.|+|+++.+.|.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~----~~~--~~~W~---g~~C~p~--~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i 434 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG----LPL--RFGWN---GDPCVPQ--QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI 434 (623)
T ss_pred ccccCchHHHHHHHHHHhcC----Ccc--cCCCC---CCCCCCc--ccccccceeeccCCCCceEEEEEECCCCCccccC
Confidence 45678889999999999873 111 13785 4577310 011389999632 235899999999999999
Q ss_pred cccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCC-
Q 016534 100 TPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLM- 178 (388)
Q Consensus 100 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~- 178 (388)
|..++.+++|+.|+|++|.+.|.+|..++.+++|++|+|++|.+.|.+|+.++++++|++|+|++|.++|.+|..+...
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred CCCcEEEcccCcCCC
Q 016534 179 SSLRRLDLSYNKLTG 193 (388)
Q Consensus 179 ~~L~~L~l~~n~l~~ 193 (388)
.++..+++.+|....
T Consensus 515 ~~~~~l~~~~N~~lc 529 (623)
T PLN03150 515 LHRASFNFTDNAGLC 529 (623)
T ss_pred ccCceEEecCCcccc
Confidence 467788888886543
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2.4e-12 Score=123.26 Aligned_cols=195 Identities=32% Similarity=0.431 Sum_probs=99.5
Q ss_pred EEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCC-CCCEEEccCCcCCCCcCccccCCCCCcEEEcccC
Q 016534 111 ILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLK-NLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYN 189 (388)
Q Consensus 111 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n 189 (388)
.+++..+.+.... ..+..++.++.|++.+|.++ .+++...... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455555442211 22333455556666666555 4444444442 5666666666655 44445555666666666666
Q ss_pred cCCCCCCC--CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCC
Q 016534 190 KLTGSLPK--LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGIS 267 (388)
Q Consensus 190 ~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 267 (388)
++....+. ..++|+.|++++|++... +........|++|++++|... ..+..+.++.++..+.+.+|++.. ++
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~--~~ 248 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED--LP 248 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccC--chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee--cc
Confidence 55532222 234555555555555432 222233344666666665432 334445555555555566665554 13
Q ss_pred CCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCC
Q 016534 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIP 315 (388)
Q Consensus 268 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 315 (388)
..+..++.++.|++++|.++.... ++...+++.|++++|.+....|
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 344555556666666666654332 5555666666666665554433
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=3.5e-12 Score=122.07 Aligned_cols=197 Identities=31% Similarity=0.443 Sum_probs=144.6
Q ss_pred CEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCC-CCcEEEcccCcCCCC--CCCCCCCCCEEEccCC
Q 016534 134 QMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMS-SLRRLDLSYNKLTGS--LPKLPPNLSELALKNN 210 (388)
Q Consensus 134 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n 210 (388)
..+.+..+.+.. ....+..++.++.|++.+|.++ .++......+ +|+.|++++|.+... .-..+++|+.|+++.|
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 368888887752 2334566789999999999998 8888888885 999999999998843 2244578888888888
Q ss_pred ccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 016534 211 VLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYL 290 (388)
Q Consensus 211 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 290 (388)
++... +...+..+.|+.|++++|++. .+|........|+++.+++|.... .+..+..+..+..+.+.+|++.. .
T Consensus 174 ~l~~l--~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 174 DLSDL--PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred hhhhh--hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCceeee-c
Confidence 87754 333446778888888888887 566655556668888888885333 34556677777778888887764 3
Q ss_pred cccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCc
Q 016534 291 PVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPI 340 (388)
Q Consensus 291 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 340 (388)
+..+..++.+++|++++|.++ .++. +..+.+++.|++++|.+....|.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 566677777888888888888 4444 77778888888888877655443
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=2e-13 Score=121.12 Aligned_cols=244 Identities=23% Similarity=0.309 Sum_probs=124.7
Q ss_pred CceEEEEeCCCCCCC----CCcccccCCCCCCEEEccCCc---CCccCccc-------ccCCCCCCEEeeecCcCCCCCc
Q 016534 83 TRVTQLTLDPAGYSG----QLTPLISQLTQLTILDLSDNY---FFGPIPAS-------ISSLSNLQMLTLRSNSFSSSVP 148 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~-------l~~l~~L~~L~L~~n~l~~~~p 148 (388)
..+++|+|++|.+.. .+...+.+.++|+..++++-. +...+|.+ +-++++|++++||.|.|.-..+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 457888888888753 245566777788888877642 12223333 3455677777777777664444
Q ss_pred hhh----cCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcc---cCcccc
Q 016534 149 DSL----TQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGV---ITKNSF 221 (388)
Q Consensus 149 ~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~l 221 (388)
..| ..+..|++|.|.+|.+.-.--..++. .|..|. .++. ....+.|+.+...+|++... .....+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk----~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK----AASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc----cCCCcceEEEEeeccccccccHHHHHHHH
Confidence 433 34566777777766654110000000 000000 0000 01123445555554444311 002334
Q ss_pred CCCCccCEEEccCCcCCC----cchHHhhcCCCCCEEEccCCCCCCC---CCCCCCCCCCCCCEEEccCCcCCCCCcccc
Q 016534 222 DGLTQLEVIELSENSFTG----TLEAWFFLLPALQQVNLSNNTLTRV---GISKPVDGRSDLVAVDLGFNKIQGYLPVNF 294 (388)
Q Consensus 222 ~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 294 (388)
...+.|+.+.+++|.+.. .+...+.++++|+.|+|.+|.|+.. .+...+..+++|++|++++|.+...-...+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 555666677776666542 2234556666677777777666542 112233445566666666666654332222
Q ss_pred -----cCCCCCCEEEccCCccccc----CCccccCCCCCcEEeCcCCcC
Q 016534 295 -----ADYPMLSSLSMRYNRLRGG----IPLEFSHKKSLKRLFLDGNFL 334 (388)
Q Consensus 295 -----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l 334 (388)
...++|+.|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1345666666666666521 122233445566666666665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.6e-13 Score=128.65 Aligned_cols=174 Identities=28% Similarity=0.392 Sum_probs=100.7
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
.+..-...|++.|.+. .+|..+..+..|+.+.+..|.+. .+|..+.++..|.+++++.|+++ .+|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444456677777765 56666666677777777777776 67777777777777777777776 6676666655 6777
Q ss_pred EcccCcCCCCCCC--CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 185 DLSYNKLTGSLPK--LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 185 ~l~~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
.+++|+++...+. ....|..|+.+.|.+... +..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|++.
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl--psql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL--PSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhhhhc--hHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 7777766522111 113334444444443322 334555555555555555554 334444433 3555555555555
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCC
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQG 288 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~ 288 (388)
. +|..|..++.|++|.|.+|.++.
T Consensus 225 ~--iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 Y--LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred e--cchhhhhhhhheeeeeccCCCCC
Confidence 4 34445555555555555555553
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=1.9e-12 Score=112.87 Aligned_cols=137 Identities=21% Similarity=0.159 Sum_probs=102.9
Q ss_pred ccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 016534 220 SFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPM 299 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 299 (388)
....+..|+++|+++|.++ .+.+++.-.|.++.|+++.|.+..+. .+..+++|+.|||++|.++... ..-..+.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGNLLAECV-GWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh---hhhhcccceEeecccchhHhhh-hhHhhhcC
Confidence 3445667888888888887 66777778888888888888888643 3666888888888888887532 23345678
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccC-CCccCcCCCCCcEEEcCCCcCCCCCC
Q 016534 300 LSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGK-APIGFFTGDVPVAGSLGDNCLQGCPV 363 (388)
Q Consensus 300 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~l~l~~n~l~~~p~ 363 (388)
+++|.+++|.+. .+. .++.+.+|..||+++|++..- -...++++|.|+.+.+.+|++..+|.
T Consensus 354 IKtL~La~N~iE-~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 354 IKTLKLAQNKIE-TLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred EeeeehhhhhHh-hhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 888888888776 322 567778888889998887653 34678888889998899998876654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-12 Score=119.26 Aligned_cols=209 Identities=25% Similarity=0.249 Sum_probs=132.8
Q ss_pred cCCCCCCEEeeecCcCCCCCc-hhhcCCCCCCEEEccCCcCCCC--cCccccCCCCCcEEEcccCcCCCCCC----CCCC
Q 016534 128 SSLSNLQMLTLRSNSFSSSVP-DSLTQLKNLDSLDLSYNSLSGS--LPKNTFLMSSLRRLDLSYNKLTGSLP----KLPP 200 (388)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~l~~n~l~~~~~----~~~~ 200 (388)
+++.+|+.+.|.++......- .....+++++.|+|+.|-+..- +-.....+++|+.|+++.|++..... ...+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356677777777776652211 2445677777777777766522 22334567778888888777653222 2236
Q ss_pred CCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEE
Q 016534 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVD 280 (388)
Q Consensus 201 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 280 (388)
.|+.|.++.|+++-.-....+..+|+|+.|++..|...........-++.|++|+|++|++...+--...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77888888888763211334556788888888888532233333444567888888888877644334566688888888
Q ss_pred ccCCcCCCC-Cccc-----ccCCCCCCEEEccCCcccccCC--ccccCCCCCcEEeCcCCcCccC
Q 016534 281 LGFNKIQGY-LPVN-----FADYPMLSSLSMRYNRLRGGIP--LEFSHKKSLKRLFLDGNFLIGK 337 (388)
Q Consensus 281 L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~ 337 (388)
++.+.+... .|+. ...+++|++|++..|++. ..+ ..+..+++|+.|.+..|+++.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 888877754 2222 245688888888888885 222 2345567777777777777653
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=3.6e-13 Score=126.41 Aligned_cols=191 Identities=27% Similarity=0.337 Sum_probs=155.0
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
-.+..+++.|++. ++|..+..|..|+.+.+..|.+. .+|..+.++..|++++|+.|.+. .+|..++.|+ |+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3456678888876 68888888899999999999886 68889999999999999999999 7888887776 9999999
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCC--CCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcc
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLP--PNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTL 241 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 241 (388)
+|+++ .+|..++....|..|+.+.|++....+.+. .+|+.|.+..|.+... |..+..+ .|..||++.|++. .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l--p~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL--PEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC--CHHHhCC-ceeeeecccCcee-ec
Confidence 99998 899999988999999999999875444332 6788888888888754 5566644 6889999999998 88
Q ss_pred hHHhhcCCCCCEEEccCCCCCCCCCCCCC---CCCCCCCEEEccCCc
Q 016534 242 EAWFFLLPALQQVNLSNNTLTRVGISKPV---DGRSDLVAVDLGFNK 285 (388)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~ 285 (388)
|-.|.++..|++|.|.+|.+.. + |..+ +..--.++|+..-++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS-P-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS-P-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC-C-hHHHHhccceeeeeeecchhcc
Confidence 9999999999999999999987 2 3322 123345677777664
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-12 Score=116.12 Aligned_cols=250 Identities=24% Similarity=0.250 Sum_probs=171.1
Q ss_pred cccccCCCCCCEEEccCCcCCcc----CcccccCCCCCCEEeeecC---cCCCCCchhh-------cCCCCCCEEEccCC
Q 016534 100 TPLISQLTQLTILDLSDNYFFGP----IPASISSLSNLQMLTLRSN---SFSSSVPDSL-------TQLKNLDSLDLSYN 165 (388)
Q Consensus 100 ~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n 165 (388)
-+.+..+..++.++|++|.+... +...+.+.++|+..++++- +....+|+.+ -.+++|++++|++|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34566778899999999988543 4445667778888888763 2223455443 35678888888888
Q ss_pred cCCCCcCcc----ccCCCCCcEEEcccCcCCCCCCC-CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCc
Q 016534 166 SLSGSLPKN----TFLMSSLRRLDLSYNKLTGSLPK-LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGT 240 (388)
Q Consensus 166 ~l~~~~p~~----l~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 240 (388)
.+.-..+.. +..+..|++|.+.+|.+.-.... +...|..|. . ....+.-+.|+++..++|++...
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~---------~-~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA---------V-NKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------H-HhccCCCcceEEEEeeccccccc
Confidence 876444433 34577788888877766411100 011122221 0 22344567899999999998632
Q ss_pred ----chHHhhcCCCCCEEEccCCCCCCCCC---CCCCCCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCc
Q 016534 241 ----LEAWFFLLPALQQVNLSNNTLTRVGI---SKPVDGRSDLVAVDLGFNKIQGY----LPVNFADYPMLSSLSMRYNR 309 (388)
Q Consensus 241 ----~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 309 (388)
+...+...+.|+.+.++.|.+....+ ...+..+++|++|||.+|-++.. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 34567778899999999998875322 22456689999999999999854 34556788999999999998
Q ss_pred ccccCCccc-----cCCCCCcEEeCcCCcCccC----CCccCcCCCCCcEEEcCCCcCC
Q 016534 310 LRGGIPLEF-----SHKKSLKRLFLDGNFLIGK----APIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 310 l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+...-..++ ...++|+.+.+.+|.++.. +..++...+.|..|++++|.+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 875444333 2468899999999988754 2334556789999999999883
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=6.5e-11 Score=119.00 Aligned_cols=107 Identities=26% Similarity=0.377 Sum_probs=88.6
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCc
Q 016534 251 LQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLD 330 (388)
Q Consensus 251 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 330 (388)
++.|+|++|.+.+ .+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+..+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6778888888887 567778888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCccCCCccCcCC-CCCcEEEcCCCcC
Q 016534 331 GNFLIGKAPIGFFTG-DVPVAGSLGDNCL 358 (388)
Q Consensus 331 ~n~l~~~~p~~~~~~-~~L~~l~l~~n~l 358 (388)
+|.++|.+|..+... ..+..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 888888888877654 4566788887754
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.5e-12 Score=118.66 Aligned_cols=206 Identities=20% Similarity=0.221 Sum_probs=123.8
Q ss_pred cCCCCCCEEEccCCcCCCCcC--ccccCCCCCcEEEcccCcCCCCCC-----CCCCCCCEEEccCCccCcccCccccCCC
Q 016534 152 TQLKNLDSLDLSYNSLSGSLP--KNTFLMSSLRRLDLSYNKLTGSLP-----KLPPNLSELALKNNVLSGVITKNSFDGL 224 (388)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~l~~l 224 (388)
+++.+|+.+.|.++.+. ..+ .-...+++++.|+++.|-+....+ .-.++|+.|+++.|++........-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46788999999988876 333 245678999999999987663222 2347778888888877654433333356
Q ss_pred CccCEEEccCCcCCC-cchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC-cccccCCCCCCE
Q 016534 225 TQLEVIELSENSFTG-TLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYL-PVNFADYPMLSS 302 (388)
Q Consensus 225 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~ 302 (388)
++|+.|.++.|+++. .+......+|+|+.|.+..|....+. ......++.|++|||++|++.... -...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 677777787777763 22333455677777777777422111 112223677777777777766532 134456777777
Q ss_pred EEccCCcccc-cCCcc-----ccCCCCCcEEeCcCCcCccC-CCccCcCCCCCcEEEcCCCcCC
Q 016534 303 LSMRYNRLRG-GIPLE-----FSHKKSLKRLFLDGNFLIGK-APIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 303 L~L~~n~l~~-~~p~~-----~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
|+++.+++.. ..|+. ...+++|++|+++.|++.+- .-..+..+++|+.+.+..|.+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777776663 12222 23456677777777766431 1123334455555555566553
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=4.6e-11 Score=99.36 Aligned_cols=87 Identities=25% Similarity=0.314 Sum_probs=37.7
Q ss_pred ccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC---cccccC
Q 016534 220 SFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYL---PVNFAD 296 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~ 296 (388)
.+..++.|++|++++|.++...+.....+++|++|++++|++..+.--..+..+++|++|++.+|.++... ...+..
T Consensus 59 ~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 45567888888888888874433323457888888888888876543344556777888888887776431 123445
Q ss_pred CCCCCEEEcc
Q 016534 297 YPMLSSLSMR 306 (388)
Q Consensus 297 l~~L~~L~L~ 306 (388)
+|+|+.||-.
T Consensus 139 lP~Lk~LD~~ 148 (175)
T PF14580_consen 139 LPSLKVLDGQ 148 (175)
T ss_dssp -TT-SEETTE
T ss_pred cChhheeCCE
Confidence 6777777643
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=3e-11 Score=100.43 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=37.2
Q ss_pred cCCCCccCEEEccCCcCCCcchHHhh-cCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc-cCCC
Q 016534 221 FDGLTQLEVIELSENSFTGTLEAWFF-LLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNF-ADYP 298 (388)
Q Consensus 221 l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~ 298 (388)
+.+..++++|++.+|.++. + +.++ .+.+|+.|++++|.++.++ .+..++.|++|++++|.++... ..+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~---~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE---GLPGLPRLKTLDLSNNRISSIS-EGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T---T----TT--EEE--SS---S-C-HHHHHH-T
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc---CccChhhhhhcccCCCCCCccc-cchHHhCC
Confidence 3344556777777776652 2 2233 4566777777777776543 3555677777777777776532 223 3466
Q ss_pred CCCEEEccCCcccccC-CccccCCCCCcEEeCcCCcCccCCC---ccCcCCCCCcEEE
Q 016534 299 MLSSLSMRYNRLRGGI-PLEFSHKKSLKRLFLDGNFLIGKAP---IGFFTGDVPVAGS 352 (388)
Q Consensus 299 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~~~~L~~l~ 352 (388)
+|++|++++|++...- -..+..+++|+.|++.+|+++..-- .-+..+|+|+.||
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 7777777777665311 1345556667777777776654311 1233445665554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.2e-11 Score=106.24 Aligned_cols=204 Identities=20% Similarity=0.102 Sum_probs=136.7
Q ss_pred CccccCCCCCcEEEcccCcCCC--CCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEcc-CCcCCCcchHHhhcC
Q 016534 172 PKNTFLMSSLRRLDLSYNKLTG--SLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELS-ENSFTGTLEAWFFLL 248 (388)
Q Consensus 172 p~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l 248 (388)
|-.+..+++|+.+.++.+.-.. .+...-|.|+++.+....++.. ..+-..+.+....-+ ....+|..-..+..+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~---~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV---PSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc---ccccchhhhcCccCCCCCccCCceEEecchH
Confidence 3344445666666666553221 1111125566666555443321 111112222222111 112234444445556
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEe
Q 016534 249 PALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLF 328 (388)
Q Consensus 249 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 328 (388)
..|+++|+++|.++.+ .+...-.+.++.|++++|.+.... .+..+++|+.||+++|.++ .+..+-..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhhh--hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 7899999999999974 455666899999999999998643 3778899999999999998 5555556778899999
Q ss_pred CcCCcCccCCCccCcCCCCCcEEEcCCCcCCCC--CCCCCCCCCCccccccccCCCCCC
Q 016534 329 LDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGC--PVSSQLCSPSQKSYSVCKQAYGRR 385 (388)
Q Consensus 329 Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~--p~~~~~~~~L~~l~l~~n~~~~~i 385 (388)
|++|.+.. -.++..+=+|..||+++|++..+ ...++++|-|+.+.+.+|.+.+.+
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99998753 34566778899999999999854 456899999999999999987653
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=4e-11 Score=115.24 Aligned_cols=243 Identities=24% Similarity=0.258 Sum_probs=123.0
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEE
Q 016534 106 LTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLD 185 (388)
Q Consensus 106 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 185 (388)
+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444444455554432 12224445555555555555552 222244455555555555555421 1123333344444
Q ss_pred cccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch-HHhhcCCCCCEEEccCCCCCCC
Q 016534 186 LSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE-AWFFLLPALQQVNLSNNTLTRV 264 (388)
Q Consensus 186 l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 264 (388)
+. +|.+.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..+
T Consensus 147 l~---------------------~N~i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 147 LS---------------------GNLISD---ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred ec---------------------cCcchh---ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 44 444443 2234456677777777777663333 1 45666777777777766653
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCcccccCCC--CCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccC
Q 016534 265 GISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYP--MLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGF 342 (388)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 342 (388)
. .+..+..+..+++..|.++..-+ +..+. +|+.+++++|.+. ..+..+..+..+..+++.+|++... ..+
T Consensus 202 ~---~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~ 273 (414)
T KOG0531|consen 202 E---GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGL 273 (414)
T ss_pred c---chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccc
Confidence 2 23334445555666666653321 11222 2667777777666 3334555566666777777665442 223
Q ss_pred cCCCCCcEEEcCCCcCC---CC-CCC-CCCCCCCccccccccCCCCCC
Q 016534 343 FTGDVPVAGSLGDNCLQ---GC-PVS-SQLCSPSQKSYSVCKQAYGRR 385 (388)
Q Consensus 343 ~~~~~L~~l~l~~n~l~---~~-p~~-~~~~~~L~~l~l~~n~~~~~i 385 (388)
...+.+..++...|.+. .. ... ....+.++.+.+..|......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 34455555556666543 11 111 344555666666666655543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=5.7e-10 Score=114.95 Aligned_cols=106 Identities=29% Similarity=0.385 Sum_probs=58.2
Q ss_pred CceEEEEeCCCC--CCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEE
Q 016534 83 TRVTQLTLDPAG--YSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 83 ~~l~~L~l~~~~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (388)
+.+++|-+.++. +.......|..++.|++|||++|.--+.+|..++.+-+||+|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 345555555554 22222233555666666666665444456666666666666666666665 556666666666666
Q ss_pred EccCCcCCCCcCccccCCCCCcEEEcccC
Q 016534 161 DLSYNSLSGSLPKNTFLMSSLRRLDLSYN 189 (388)
Q Consensus 161 ~L~~n~l~~~~p~~l~~~~~L~~L~l~~n 189 (388)
++..+.....+|.....+.+|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66655544344444444666666665444
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.3e-09 Score=112.33 Aligned_cols=148 Identities=26% Similarity=0.301 Sum_probs=106.3
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCc--CCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEE
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNY--FFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (388)
..++.+.+.++.+.. ++.. ...+.|++|-+..|. +.....+.|..++.|+.|+|++|.-.+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 456677776666542 2222 234579999999885 544445558889999999999987777999999999999999
Q ss_pred EccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcc-cCccccCCCCccCEEEcc
Q 016534 161 DLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGV-ITKNSFDGLTQLEVIELS 233 (388)
Q Consensus 161 ~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~ 233 (388)
+++++.+. .+|.++.+++.|.+|++..+.-...++.. ..+|++|.+........ .....+..+.+|+.+...
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999998 99999999999999999987654444433 37889988876542211 112334455555555553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2e-09 Score=73.66 Aligned_cols=59 Identities=32% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCc
Q 016534 275 DLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNF 333 (388)
Q Consensus 275 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 333 (388)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444455555555555555555554444455555555555555554
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.83 E-value=2.8e-11 Score=116.85 Aligned_cols=128 Identities=26% Similarity=0.298 Sum_probs=90.6
Q ss_pred CccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 016534 225 TQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLS 304 (388)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 304 (388)
-.|...+.++|.+. .+...+.-++.++.|+|++|+++.++ .+..++.|++|||++|.++-.+--....+. |+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 35677778888776 55566777788888888888888743 566788888888888888754333333444 88888
Q ss_pred ccCCcccccCCccccCCCCCcEEeCcCCcCccCC-CccCcCCCCCcEEEcCCCcCC
Q 016534 305 MRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKA-PIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 305 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+++|.++ ++- .+.++++|+.||+++|-+.+-- -..++.+..|+.|++.+|.+-
T Consensus 239 lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888877 332 4667788888888888776632 223556677888888888764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.5e-09 Score=72.49 Aligned_cols=60 Identities=43% Similarity=0.571 Sum_probs=35.5
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCc
Q 016534 107 TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNS 166 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 166 (388)
++|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666666655444555666666666666666665555555666666666666554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=7.8e-10 Score=106.36 Aligned_cols=219 Identities=25% Similarity=0.277 Sum_probs=138.3
Q ss_pred cCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEc
Q 016534 128 SSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELAL 207 (388)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 207 (388)
..+..++.++++.|.+.. +-..+..+.+|+.+++.+|.+. .+...+..+++|++|++++|.++.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-------------- 132 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-------------- 132 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc--------------
Confidence 345566666677776663 2334566677777777777776 333335556666666666666651
Q ss_pred cCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 016534 208 KNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQ 287 (388)
Q Consensus 208 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 287 (388)
...+..++.|+.|++++|.++.. ..+..++.|+.+++++|++..++.-. ...+..++.+++..|.+.
T Consensus 133 ----------i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 133 ----------LEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ----------ccchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 12455566688999999988632 23445788888999999888754201 356788888888888887
Q ss_pred CCCcccccCCCCCCEEEccCCcccccCCccccCCC--CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCC
Q 016534 288 GYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK--SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSS 365 (388)
Q Consensus 288 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~ 365 (388)
.. ..+..+..+..+++..|.++..-+. ..+. .|+.+++++|++.. ++..+..+..+..+++.+|.+..... +
T Consensus 200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~-~ 273 (414)
T KOG0531|consen 200 EI--EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG-L 273 (414)
T ss_pred cc--cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc-c
Confidence 43 3334445566668888877733321 2222 37888999998764 33556677888888888887763321 2
Q ss_pred CCCCCCccccccccCC
Q 016534 366 QLCSPSQKSYSVCKQA 381 (388)
Q Consensus 366 ~~~~~L~~l~l~~n~~ 381 (388)
.....+..+....|.+
T Consensus 274 ~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKL 289 (414)
T ss_pred cccchHHHhccCcchh
Confidence 3334455555555543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.1e-10 Score=97.27 Aligned_cols=178 Identities=15% Similarity=0.037 Sum_probs=85.1
Q ss_pred CCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCC-CCCCCCCCCCCCCCCCCCEE
Q 016534 201 NLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN-TLTRVGISKPVDGRSDLVAV 279 (388)
Q Consensus 201 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L 279 (388)
.++++|+++..++..--...++.|.+|+.|.+.++++...+-..+++-.+|+.++++.+ .++.....-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45555555554442211223455666666666666666666666666666666666664 23332222234446666666
Q ss_pred EccCCcCCCCCcccc-c-CCCCCCEEEccCCccc---ccCCccccCCCCCcEEeCcCC-cCccCCCccCcCCCCCcEEEc
Q 016534 280 DLGFNKIQGYLPVNF-A-DYPMLSSLSMRYNRLR---GGIPLEFSHKKSLKRLFLDGN-FLIGKAPIGFFTGDVPVAGSL 353 (388)
Q Consensus 280 ~L~~n~l~~~~~~~l-~-~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~L~~l~l 353 (388)
++++|.+....-..+ . --++|+.|+++++.-. ..+..-..+++++.+||||.| .++......+..++.|+.+.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666665543221111 1 1145555555554211 011112234555666666554 333333344555555666655
Q ss_pred CCCcCC--CCCCCCCCCCCCccccccc
Q 016534 354 GDNCLQ--GCPVSSQLCSPSQKSYSVC 378 (388)
Q Consensus 354 ~~n~l~--~~p~~~~~~~~L~~l~l~~ 378 (388)
+.|..- ..-..+...|+|.+||+-+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecc
Confidence 555411 1111134445555555443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=1e-08 Score=88.64 Aligned_cols=181 Identities=21% Similarity=0.275 Sum_probs=97.9
Q ss_pred CceEEEEeCCCCCCCC----CcccccCCCCCCEEEccCCcCC---ccC-------cccccCCCCCCEEeeecCcCCCCCc
Q 016534 83 TRVTQLTLDPAGYSGQ----LTPLISQLTQLTILDLSDNYFF---GPI-------PASISSLSNLQMLTLRSNSFSSSVP 148 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~---~~~-------~~~l~~l~~L~~L~L~~n~l~~~~p 148 (388)
..+++++|++|.+... +...+.+-.+|+..++++-... ..+ ..++-+||+|+..+||.|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4578889999888643 4445666778888888764321 112 2345678888888888888876666
Q ss_pred hhh----cCCCCCCEEEccCCcCCC----CcCcc---------ccCCCCCcEEEcccCcCCCCCCC-------CCCCCCE
Q 016534 149 DSL----TQLKNLDSLDLSYNSLSG----SLPKN---------TFLMSSLRRLDLSYNKLTGSLPK-------LPPNLSE 204 (388)
Q Consensus 149 ~~l----~~l~~L~~L~L~~n~l~~----~~p~~---------l~~~~~L~~L~l~~n~l~~~~~~-------~~~~L~~ 204 (388)
+.+ +....|++|.+++|.+.- .+..+ ...-|.|+.+..+.|++...... .-.+|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 544 456788888888887651 11111 12245566666666665421110 0134555
Q ss_pred EEccCCccCcc--c--CccccCCCCccCEEEccCCcCCCc----chHHhhcCCCCCEEEccCCCCCC
Q 016534 205 LALKNNVLSGV--I--TKNSFDGLTQLEVIELSENSFTGT----LEAWFFLLPALQQVNLSNNTLTR 263 (388)
Q Consensus 205 L~l~~n~~~~~--~--~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 263 (388)
+.+..|.+.-. - ....+.-+.+|+.||+..|.++-. +...+..++.|+.|.+.+|-++.
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 55555544311 0 001112234555555555555421 22233344445555555554443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4.5e-08 Score=85.74 Aligned_cols=182 Identities=23% Similarity=0.227 Sum_probs=107.6
Q ss_pred CCceEEEEeCCCCCCC--CCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC-CCchhhcCCCCCC
Q 016534 82 STRVTQLTLDPAGYSG--QLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS-SVPDSLTQLKNLD 158 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 158 (388)
..+|++++|.+|.++. ++...+.++|+|+.|+|+.|++...+...-..+.+|++|-|.+..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3577888888888763 455567788888888888887765433211345577888887776643 2333456677888
Q ss_pred EEEccCCcCCCCc--CccccC-CCCCcEEEcccCcCC-----CCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEE
Q 016534 159 SLDLSYNSLSGSL--PKNTFL-MSSLRRLDLSYNKLT-----GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVI 230 (388)
Q Consensus 159 ~L~L~~n~l~~~~--p~~l~~-~~~L~~L~l~~n~l~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 230 (388)
.|+++.|.+.... ...... .+.++++..-.|... ..+.+.++++..+.+..|.+...-.......++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 8887777433110 011111 123333333333211 01123446677777777766544334455566777778
Q ss_pred EccCCcCCCcc-hHHhhcCCCCCEEEccCCCCCC
Q 016534 231 ELSENSFTGTL-EAWFFLLPALQQVNLSNNTLTR 263 (388)
Q Consensus 231 ~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 263 (388)
+++.+++.... -+.+..+++|+.|.++++.+.+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 88887776432 2556777888888888877664
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=2.6e-09 Score=103.60 Aligned_cols=170 Identities=23% Similarity=0.163 Sum_probs=117.9
Q ss_pred CCCCEEEccCCccCcccCccccCCC-CccCEEEccCCcCCCcchHHhhc----------CCCCCEEEccCCCCCCCCCCC
Q 016534 200 PNLSELALKNNVLSGVITKNSFDGL-TQLEVIELSENSFTGTLEAWFFL----------LPALQQVNLSNNTLTRVGISK 268 (388)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~----------l~~L~~L~L~~n~l~~~~~~~ 268 (388)
.+|+.|.+.++.+.... .+..+ ..|++|-..+ .++ .+.+.|.. +..|.+.+.+.|.+... .+
T Consensus 109 ~sLr~LElrg~~L~~~~---GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m--D~ 181 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLSTAK---GLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM--DE 181 (1096)
T ss_pred cceeeEEecCcchhhhh---hhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHHhH--HH
Confidence 67888888887765321 11111 2355554332 221 11111111 23577888888988763 45
Q ss_pred CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCC
Q 016534 269 PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVP 348 (388)
Q Consensus 269 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 348 (388)
.+.-++.++.|+|++|+++... .+..+++|+.|||++|.++ .+|..=..-.+|+.|.++||.++. -.++.++.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh--hhhHHhhhhh
Confidence 5666899999999999998643 7788999999999999999 555433333459999999998875 3457889999
Q ss_pred cEEEcCCCcCCCCCC--CCCCCCCCccccccccCC
Q 016534 349 VAGSLGDNCLQGCPV--SSQLCSPSQKSYSVCKQA 381 (388)
Q Consensus 349 ~~l~l~~n~l~~~p~--~~~~~~~L~~l~l~~n~~ 381 (388)
+.||++.|.+.+..+ .+..+..|..|++++|.+
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999998874322 256777899999999865
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.4e-09 Score=91.42 Aligned_cols=174 Identities=22% Similarity=0.164 Sum_probs=93.0
Q ss_pred CCCEEeeecCcCCC-CCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCc-CCCC----CCCCCCCCCEE
Q 016534 132 NLQMLTLRSNSFSS-SVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNK-LTGS----LPKLPPNLSEL 205 (388)
Q Consensus 132 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~-l~~~----~~~~~~~L~~L 205 (388)
.|++++|++..++- .+-..+..+.+|+.|.+.++++.+.+...+.+..+|+.|+++.+. ++.. +....+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35666666555542 122233455566666666666665555555666666666665542 2111 01112456666
Q ss_pred EccCCccCcccCccccCC-CCccCEEEccCCcC---CCcchHHhhcCCCCCEEEccCCC-CCCCCCCCCCCCCCCCCEEE
Q 016534 206 ALKNNVLSGVITKNSFDG-LTQLEVIELSENSF---TGTLEAWFFLLPALQQVNLSNNT-LTRVGISKPVDGRSDLVAVD 280 (388)
Q Consensus 206 ~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~ 280 (388)
++++|.+..........+ -+.|..|+++++.- ...+......+++|..|||++|. ++. +....+.+++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence 666665543321212222 14566777776542 12333444567777777777764 332 3333445577777777
Q ss_pred ccCCcCCCCCccc---ccCCCCCCEEEccCC
Q 016534 281 LGFNKIQGYLPVN---FADYPMLSSLSMRYN 308 (388)
Q Consensus 281 L~~n~l~~~~~~~---l~~l~~L~~L~L~~n 308 (388)
++.|.. ++|.. +...|+|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 777764 24443 356677888887664
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=2e-08 Score=78.12 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=93.9
Q ss_pred ccCEEEccCCcCCCcchH---HhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 016534 226 QLEVIELSENSFTGTLEA---WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSS 302 (388)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 302 (388)
.+..++++.|.+. .+++ .+.....|+.+++++|.+..++ +.....++.+++|++++|+++. +|..++.++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp-~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFP-KKFTIKFPTATTLNLANNEISD-VPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCC-HHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhh
Confidence 4556788888775 3333 3445567778899999888642 2333446788899999999986 6777889999999
Q ss_pred EEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC-CCCCCC
Q 016534 303 LSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ-GCPVSS 365 (388)
Q Consensus 303 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~-~~p~~~ 365 (388)
|+++.|.+. ..|..+..+.++..|+..+|.+. ++|-.+..-......++.++.+. +++-.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 999999988 66777777888888888888764 45544433344444556666766 455433
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=5e-08 Score=84.42 Aligned_cols=247 Identities=19% Similarity=0.156 Sum_probs=144.7
Q ss_pred ccCCCCCCEEEccCCcCCccC----cccccCCCCCCEEeeecCc---CCCCCch-------hhcCCCCCCEEEccCCcCC
Q 016534 103 ISQLTQLTILDLSDNYFFGPI----PASISSLSNLQMLTLRSNS---FSSSVPD-------SLTQLKNLDSLDLSYNSLS 168 (388)
Q Consensus 103 l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~---l~~~~p~-------~l~~l~~L~~L~L~~n~l~ 168 (388)
+.-+..++.++|++|.|...- ...+.+-.+|+..+++.-. ..+.+++ .+-.||+|++.+|+.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445788999999999886543 3344555678888777632 2223333 3456788888888888887
Q ss_pred CCcCcc----ccCCCCCcEEEcccCcCCCCCC-CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch-
Q 016534 169 GSLPKN----TFLMSSLRRLDLSYNKLTGSLP-KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE- 242 (388)
Q Consensus 169 ~~~p~~----l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~- 242 (388)
...|.. +...+.|.+|.+++|.+.-... ++...|.+| .. ..-...-|.|+.+.+..|++..-..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~--------nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AY--------NKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HH--------HhhhccCCCceEEEeccchhccCcHH
Confidence 666543 4556778888888776531100 000001100 00 1112334677788888777752211
Q ss_pred ---HHhhcCCCCCEEEccCCCCCCCCCCC----CCCCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCccc
Q 016534 243 ---AWFFLLPALQQVNLSNNTLTRVGISK----PVDGRSDLVAVDLGFNKIQGY----LPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 243 ---~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
..+.....|+++.+..|.+....+.. .+..+.+|++||+++|-++-. ....+..++.|+.|.+..|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 12233356778888887776421111 123467888888888877743 2344567777888888888776
Q ss_pred ccCCccc------cCCCCCcEEeCcCCcCccCCCccC-------cCCCCCcEEEcCCCcCC
Q 016534 312 GGIPLEF------SHKKSLKRLFLDGNFLIGKAPIGF-------FTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 312 ~~~p~~~------~~l~~L~~L~Ls~n~l~~~~p~~~-------~~~~~L~~l~l~~n~l~ 359 (388)
..-..++ ...++|..|...+|...+.+...+ .+++-|..+.+.+|.+.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 5443322 124677778788886665443221 13355555666666664
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=4.6e-08 Score=76.06 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=91.3
Q ss_pred cccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 016534 219 NSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYP 298 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 298 (388)
..+.....|...++++|.+....+..-.+.+.++.|++++|.+++ +|..+..++.|+.|+++.|.+.. .|..+..+.
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~ 123 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLI 123 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcccc-chHHHHHHH
Confidence 345566788889999999985544544556689999999999997 57778889999999999999985 566667788
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCC
Q 016534 299 MLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345 (388)
Q Consensus 299 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 345 (388)
++..|+..+|.+. ++|..+-.-......++.++++.+.-+.....+
T Consensus 124 ~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 124 KLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred hHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 9999999998887 666554332333344567777777766555444
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=1.6e-06 Score=76.30 Aligned_cols=184 Identities=21% Similarity=0.206 Sum_probs=94.0
Q ss_pred cCCCCCCEEEccCCcCCc--cCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCC-cCccccCCCC
Q 016534 104 SQLTQLTILDLSDNYFFG--PIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGS-LPKNTFLMSS 180 (388)
Q Consensus 104 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~ 180 (388)
...+.++.+||.+|.++. .+..-+.++|.|++|+++.|.+...+-..-.-..+|++|.|.++.+... ....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 356778888888888864 3444566888888888888887732211112446788888888776533 2334456777
Q ss_pred CcEEEcccCcCCC------CCCCCCCCCCEEEccCCccCcccC-ccccCCCCccCEEEccCCcCCCcch-HHhhcCCCCC
Q 016534 181 LRRLDLSYNKLTG------SLPKLPPNLSELALKNNVLSGVIT-KNSFDGLTQLEVIELSENSFTGTLE-AWFFLLPALQ 252 (388)
Q Consensus 181 L~~L~l~~n~l~~------~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 252 (388)
++.|.++.|.+.. .+....+.+++++...|....-.. ...-.-++++..+-+..|.+..... ......+.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 7777777774321 111122334444444333211000 0001123444444444444432111 1122233444
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 016534 253 QVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQ 287 (388)
Q Consensus 253 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 287 (388)
.|+|+.+++....--..+.+++.|..|.++++.+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 55555555544332334445555555555555544
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=1.5e-05 Score=74.72 Aligned_cols=89 Identities=21% Similarity=0.343 Sum_probs=38.2
Q ss_pred CCCCCEEEccCCcCCccCcccccCCC-CCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 106 LTQLTILDLSDNYFFGPIPASISSLS-NLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 106 l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
+.++++|++++|.++ .+| .+| +|++|.++++.--..+|..+ .++|++|.+++|.....+|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 445555555555443 223 122 35555555432212334332 13555555555521113332 34445
Q ss_pred EcccCcCCCCCCCCCCCCCEEEcc
Q 016534 185 DLSYNKLTGSLPKLPPNLSELALK 208 (388)
Q Consensus 185 ~l~~n~l~~~~~~~~~~L~~L~l~ 208 (388)
++..+... .++.++++|+.|.+.
T Consensus 118 ~L~~n~~~-~L~~LPssLk~L~I~ 140 (426)
T PRK15386 118 EIKGSATD-SIKNVPNGLTSLSIN 140 (426)
T ss_pred EeCCCCCc-ccccCcchHhheecc
Confidence 55443332 234444555555553
No 54
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.07 E-value=7e-06 Score=51.43 Aligned_cols=41 Identities=41% Similarity=0.787 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCccceeeC
Q 016534 29 PQDISALKAFKASIKPSSIQPWSCLASWDFTA-TDPCALPRRTHFTCGLLCS 79 (388)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~-~~~C~~~~~~~~~~g~~c~ 79 (388)
+.|++||++||.++. .++...+.+|+... .++|.| .||+|+
T Consensus 2 ~~d~~aLl~~k~~l~---~~~~~~l~~W~~~~~~~~C~W-------~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN---NDPSGVLSSWNPSSDSDPCSW-------SGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT----SC-CCCTT--TT--S-CCCS-------TTEEE-
T ss_pred cHHHHHHHHHHHhcc---cccCcccccCCCcCCCCCeee-------ccEEeC
Confidence 579999999999994 24567789998763 799999 899995
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=3.9e-05 Score=72.01 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=66.6
Q ss_pred hcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCC-CCCCCCEEEccCCccCcccCccccCCCCccCE
Q 016534 151 LTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPK-LPPNLSELALKNNVLSGVITKNSFDGLTQLEV 229 (388)
Q Consensus 151 l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 229 (388)
+..+.++++|++++|.++ .+|. -..+|+.|.++++.--..+|. ++++|++|++.+|.....+ | .+|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL-P------~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL-P------ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc-c------cccce
Confidence 344677888888888766 5562 234577777776433223332 3456777777666322122 1 24555
Q ss_pred EEccCCcCC--CcchHHhhcCCCCCEEEccCCC-CCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 016534 230 IELSENSFT--GTLEAWFFLLPALQQVNLSNNT-LTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMR 306 (388)
Q Consensus 230 L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 306 (388)
|++..+... +.+| ++|+.|.+.+++ .....++.. -.++|++|++++|.... .|..+. .+|+.|+++
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEec
Confidence 555544332 1222 234555554322 111111111 13556666666665442 233222 456666665
Q ss_pred CC
Q 016534 307 YN 308 (388)
Q Consensus 307 ~n 308 (388)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.7e-05 Score=49.83 Aligned_cols=36 Identities=31% Similarity=0.558 Sum_probs=14.8
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 275 DLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 275 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
+|++|++++|+++. +|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444443 2223444444444444444444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=4.3e-05 Score=63.75 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=62.4
Q ss_pred CCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEc
Q 016534 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDL 281 (388)
Q Consensus 202 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 281 (388)
...+++++|.+.. ...|..++.|.+|.+++|+++..-|..-..+++|..|.+.+|.+..+.--..+..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3344444444432 2345666777777777777776555555556677777777777665433334555677777777
Q ss_pred cCCcCCCC---CcccccCCCCCCEEEccCC
Q 016534 282 GFNKIQGY---LPVNFADYPMLSSLSMRYN 308 (388)
Q Consensus 282 ~~n~l~~~---~~~~l~~l~~L~~L~L~~n 308 (388)
-+|..+.. -.-.+..+|+|+.||+..=
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77766532 1223456677777776643
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.6e-05 Score=49.00 Aligned_cols=36 Identities=42% Similarity=0.611 Sum_probs=15.7
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCC
Q 016534 108 QLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFS 144 (388)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 144 (388)
+|++|++++|.++ .+|+.++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555444 23333444444444444444444
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.82 E-value=3.6e-07 Score=83.71 Aligned_cols=290 Identities=18% Similarity=0.040 Sum_probs=168.5
Q ss_pred CceEEEEeCCCCCCCC--CcccccCCCCCCEEEccCC-cCCccCccccc-CCCCCCEEeeecC-cCCCCCch-hhcCCCC
Q 016534 83 TRVTQLTLDPAGYSGQ--LTPLISQLTQLTILDLSDN-YFFGPIPASIS-SLSNLQMLTLRSN-SFSSSVPD-SLTQLKN 156 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~p~-~l~~l~~ 156 (388)
++++++++.+..-.+. +-..-.+++++++|++.++ +++...-..++ .+++|+++++..| .+++..-. --..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 6788888888765443 3334568899999999888 55554333343 5788999998884 45543333 2246789
Q ss_pred CCEEEccCCcC-CCC-cCccccCCCCCcEEEcccCcCCC-----CCCCCCCCCCEEEccCCcc-CcccCccccCCCCccC
Q 016534 157 LDSLDLSYNSL-SGS-LPKNTFLMSSLRRLDLSYNKLTG-----SLPKLPPNLSELALKNNVL-SGVITKNSFDGLTQLE 228 (388)
Q Consensus 157 L~~L~L~~n~l-~~~-~p~~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~l~~L~ 228 (388)
|++++++.+.- ++. +-.....++.++.+...++.=.+ .+......+.++++..|.. +..-....-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999988753 221 11223445556666555442110 0111113344555545432 2111011123466788
Q ss_pred EEEccCCcCCCcch--HHhhcCCCCCEEEccCCC-CCCCCCCCCCCCCCCCCEEEccCCcCCCC--CcccccCCCCCCEE
Q 016534 229 VIELSENSFTGTLE--AWFFLLPALQQVNLSNNT-LTRVGISKPVDGRSDLVAVDLGFNKIQGY--LPVNFADYPMLSSL 303 (388)
Q Consensus 229 ~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L 303 (388)
.|+.+++..-+..+ ....+..+|+.+.++.++ |+...+...-.++..|+.+++..+..... +...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 89888765432222 233567889999999985 55543333334578888888887754422 22222467889999
Q ss_pred EccCCcccccC-----CccccCCCCCcEEeCcCCcCcc-CCCccCcCCCCCcEEEcCCCc-CC--CCCCCCCCCCCCc
Q 016534 304 SMRYNRLRGGI-----PLEFSHKKSLKRLFLDGNFLIG-KAPIGFFTGDVPVAGSLGDNC-LQ--GCPVSSQLCSPSQ 372 (388)
Q Consensus 304 ~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~~L~~l~l~~n~-l~--~~p~~~~~~~~L~ 372 (388)
.++++...... ...-.....+..+.|++++.+. ..-..+..++.|+.+++-+++ .+ .+.....++++++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 99987543221 1222345678888888886543 344566677888888888774 22 2333344555444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=7.7e-05 Score=62.27 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=49.1
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccc--cCCccccCCCCCcEE
Q 016534 250 ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRG--GIPLEFSHKKSLKRL 327 (388)
Q Consensus 250 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L 327 (388)
+...+++++|++...+ .+..++.|.+|.+.+|.|+.+.|.--.-+++|+.|.+.+|.|.. .+ .-+..+++|++|
T Consensus 43 ~~d~iDLtdNdl~~l~---~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD---NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhcc---cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCcccee
Confidence 4455666666555422 34445566666666666665444333344555666666655541 11 123445555555
Q ss_pred eCcCCcCccCCC---ccCcCCCCCcEEEcC
Q 016534 328 FLDGNFLIGKAP---IGFFTGDVPVAGSLG 354 (388)
Q Consensus 328 ~Ls~n~l~~~~p---~~~~~~~~L~~l~l~ 354 (388)
.+-+|+.+..-- -.+..+++|+.||..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehh
Confidence 555555443211 123344555555544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.7e-05 Score=80.28 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=56.0
Q ss_pred ccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC--c----cc
Q 016534 220 SFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYL--P----VN 293 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~----~~ 293 (388)
...++++|..||+|+.+++.. ..++.+++|+.|.+.+-.+.....-..+..+++|++||+|........ . +.
T Consensus 168 lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 345667777777777766633 456677777777777665554221223445677777777765544321 1 11
Q ss_pred ccCCCCCCEEEccCCcccccCCc
Q 016534 294 FADYPMLSSLSMRYNRLRGGIPL 316 (388)
Q Consensus 294 l~~l~~L~~L~L~~n~l~~~~p~ 316 (388)
-..+|.|+.||.+++.+.+.+-+
T Consensus 246 ~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred cccCccccEEecCCcchhHHHHH
Confidence 23467777777777776655443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=4.4e-05 Score=77.37 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=81.8
Q ss_pred CCCCEEEccCCccCcccCcccc-CCCCccCEEEccCCcCC-CcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCC
Q 016534 200 PNLSELALKNNVLSGVITKNSF-DGLTQLEVIELSENSFT-GTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLV 277 (388)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 277 (388)
.+|++|++++...-..--+..+ ..+|+|+.|.+++-.+. ..+.....+.++|..||+++.+++.+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 5677788777443211101122 24677888887776554 23344556677788888888777753 3566677777
Q ss_pred EEEccCCcCCC-CCcccccCCCCCCEEEccCCcccccC--C----ccccCCCCCcEEeCcCCcCccCCCc
Q 016534 278 AVDLGFNKIQG-YLPVNFADYPMLSSLSMRYNRLRGGI--P----LEFSHKKSLKRLFLDGNFLIGKAPI 340 (388)
Q Consensus 278 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~Ls~n~l~~~~p~ 340 (388)
+|.+.+=.+.. ..-..+-++++|+.||+|........ . +.-..+|+|+.||.|++.+.+.+-+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 77777766653 22234556778888888766444211 1 1223466777777777666655443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00071 Score=53.50 Aligned_cols=108 Identities=20% Similarity=0.284 Sum_probs=45.6
Q ss_pred ccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCC
Q 016534 218 KNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADY 297 (388)
Q Consensus 218 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 297 (388)
...|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +..++ ...+..+++++.+.+.. .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG-DNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc-eeeeecccccccccccc-ccccccccccccc
Confidence 44566666777777663 344344445555666666666654 44332 23344555566666644 3333333445555
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEeCcC
Q 016534 298 PMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDG 331 (388)
Q Consensus 298 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 331 (388)
++|+.+++..+ +.......+.+. +++.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666666443 332333344443 555555543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.27 E-value=5.3e-06 Score=76.22 Aligned_cols=273 Identities=17% Similarity=0.054 Sum_probs=162.2
Q ss_pred CCCCEEEccCCcCCcc--CcccccCCCCCCEEeeecCc-CCCCCchhh-cCCCCCCEEEccCC-cCCCCcCc-cccCCCC
Q 016534 107 TQLTILDLSDNYFFGP--IPASISSLSNLQMLTLRSNS-FSSSVPDSL-TQLKNLDSLDLSYN-SLSGSLPK-NTFLMSS 180 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~-~l~~~~~ 180 (388)
..|+.|.++++.-.+. +...-.+++++++|.+.++. +++..-..+ ..+++|+++++..+ .++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688899988843332 33344578999999888874 444333333 35789999999884 34432222 3345889
Q ss_pred CcEEEcccCc-CCCCC----CCCCCCCCEEEccCCccCcccC-ccccCCCCccCEEEccCCc-CCCcch-HHhhcCCCCC
Q 016534 181 LRRLDLSYNK-LTGSL----PKLPPNLSELALKNNVLSGVIT-KNSFDGLTQLEVIELSENS-FTGTLE-AWFFLLPALQ 252 (388)
Q Consensus 181 L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 252 (388)
|++++++.+. +++.- ..-...++.+...+|.-.+.-. ...-+.+..+.++++..+. ++...- ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999998874 33311 1111334555445443221100 0011223345556654443 332211 1123466789
Q ss_pred EEEccCCCC-CCCCCCCCCCCCCCCCEEEccCCc-CCCCCcccc-cCCCCCCEEEccCCccc--ccCCccccCCCCCcEE
Q 016534 253 QVNLSNNTL-TRVGISKPVDGRSDLVAVDLGFNK-IQGYLPVNF-ADYPMLSSLSMRYNRLR--GGIPLEFSHKKSLKRL 327 (388)
Q Consensus 253 ~L~L~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L 327 (388)
.++.+++.. ++..+-.......+|+++-++.++ ++..-...+ .+++.|+.+++..+... +++...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 999988754 332222223357899999999986 444333333 36889999999987553 3344444578899999
Q ss_pred eCcCCcC-ccCCCc----cCcCCCCCcEEEcCCCcCC--CCCCCCCCCCCCcccccccc
Q 016534 328 FLDGNFL-IGKAPI----GFFTGDVPVAGSLGDNCLQ--GCPVSSQLCSPSQKSYSVCK 379 (388)
Q Consensus 328 ~Ls~n~l-~~~~p~----~~~~~~~L~~l~l~~n~l~--~~p~~~~~~~~L~~l~l~~n 379 (388)
.++++.. ++.... .-.....+..+.+++++.. ..-..+..|+.|+++++=.+
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 9998854 333222 2234578889999999754 34566788999999887443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00019 Score=62.35 Aligned_cols=86 Identities=28% Similarity=0.352 Sum_probs=48.9
Q ss_pred ccCCCCccCEEEccCC--cCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC---cccc
Q 016534 220 SFDGLTQLEVIELSEN--SFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYL---PVNF 294 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l 294 (388)
.+-.+++|++|+++.| +..+.++.....+++|+++++++|++..+.--..+..+++|..|++.+|.-+... -..|
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3445667777777777 4444444444555777777777777664332223444666777777776655421 1223
Q ss_pred cCCCCCCEEEc
Q 016534 295 ADYPMLSSLSM 305 (388)
Q Consensus 295 ~~l~~L~~L~L 305 (388)
.-+++|++||-
T Consensus 140 ~ll~~L~~LD~ 150 (260)
T KOG2739|consen 140 LLLPSLKYLDG 150 (260)
T ss_pred HHhhhhccccc
Confidence 34555665554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.14 E-value=0.0013 Score=51.98 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
..|..+++|+.+.+.. .+..+. ...+..+.+|+.+++..+ +.......|..+++|+.+.+.+ .+.......+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~-~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIG-ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeC-hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3466777899999875 455432 445777888999999875 6665666788888899999976 45434455777789
Q ss_pred CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCC-CCCCCCCCCc
Q 016534 323 SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCP-VSSQLCSPSQ 372 (388)
Q Consensus 323 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p-~~~~~~~~L~ 372 (388)
+++.+++..+ +.......+.++ .++.+.+.. .+..++ ..+.+|++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999999765 443334455555 888888876 444443 3366666653
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00035 Score=60.73 Aligned_cols=109 Identities=18% Similarity=0.078 Sum_probs=69.4
Q ss_pred chHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCC--cCCCCCcccccCCCCCCEEEccCCcccccCCcc-
Q 016534 241 LEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFN--KIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLE- 317 (388)
Q Consensus 241 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~- 317 (388)
+....-....|+.+++.+..++.+. .+..+++|++|.++.| ++++.++.....+++|+++++++|++.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccccccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 4444445567777788877776532 3446788999999999 5555454444566999999999998872 222
Q ss_pred --ccCCCCCcEEeCcCCcCccCCC---ccCcCCCCCcEEEcC
Q 016534 318 --FSHKKSLKRLFLDGNFLIGKAP---IGFFTGDVPVAGSLG 354 (388)
Q Consensus 318 --~~~l~~L~~L~Ls~n~l~~~~p---~~~~~~~~L~~l~l~ 354 (388)
+..+++|..|++.+|..++..- ..+.-+++|++++--
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 4456677788888887665211 122233666665443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=6.3e-05 Score=65.84 Aligned_cols=98 Identities=27% Similarity=0.359 Sum_probs=69.9
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCch--hhcCCCCCCEE
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPD--SLTQLKNLDSL 160 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L 160 (388)
..|+.|++-++++.+. ....+++.|++|.|+.|+|+..-| |..+++|++|+|..|.|.+ +.+ .+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 4456666666666542 124678899999999999875433 6788899999999998873 222 35688999999
Q ss_pred EccCCcCCCCcCcc-----ccCCCCCcEEE
Q 016534 161 DLSYNSLSGSLPKN-----TFLMSSLRRLD 185 (388)
Q Consensus 161 ~L~~n~l~~~~p~~-----l~~~~~L~~L~ 185 (388)
.|..|.-.|..+.. +..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99988877665543 34577887776
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=4.8e-05 Score=66.57 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEc
Q 016534 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDL 281 (388)
Q Consensus 202 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 281 (388)
.++|++.+|+++.. .....++.|+.|.|+-|.++..- .+..|++|++|.|..|.|.+++--..+.++++|++|.|
T Consensus 21 vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34444445544432 12345666667777766665332 25566666667777666665433334555666667766
Q ss_pred cCCcCCCCCcc-----cccCCCCCCEEE
Q 016534 282 GFNKIQGYLPV-----NFADYPMLSSLS 304 (388)
Q Consensus 282 ~~n~l~~~~~~-----~l~~l~~L~~L~ 304 (388)
..|.-.|..+. .+.-+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 66665544322 234556666665
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.68 E-value=0.0018 Score=63.48 Aligned_cols=107 Identities=25% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCCCEEEccCCcCCCC--cCccccCCCCCcEEEcccC-cCCCCCC-------CCCCCCCEEEccCCc-cCcccCccccC
Q 016534 154 LKNLDSLDLSYNSLSGS--LPKNTFLMSSLRRLDLSYN-KLTGSLP-------KLPPNLSELALKNNV-LSGVITKNSFD 222 (388)
Q Consensus 154 l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~l~~n-~l~~~~~-------~~~~~L~~L~l~~n~-~~~~~~~~~l~ 222 (388)
.+.|+.+.+.++.-... +-.....++.|+.|+++++ ......+ ....+|+.++++++. ++... -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHHH
Confidence 45566666555432222 2233445666666666552 1111111 112455555555555 22111 11222
Q ss_pred -CCCccCEEEccCCc-CCCc-chHHhhcCCCCCEEEccCCCC
Q 016534 223 -GLTQLEVIELSENS-FTGT-LEAWFFLLPALQQVNLSNNTL 261 (388)
Q Consensus 223 -~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l 261 (388)
.+++|++|.+.++. ++.. +......++.|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766555 3422 223334466677777776644
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0069 Score=31.60 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=9.0
Q ss_pred CcEEeCcCCcCccCCCccC
Q 016534 324 LKRLFLDGNFLIGKAPIGF 342 (388)
Q Consensus 324 L~~L~Ls~n~l~~~~p~~~ 342 (388)
|++|+|++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555554 444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0081 Score=31.34 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=8.0
Q ss_pred CCEEEccCCcCCccCcccc
Q 016534 109 LTILDLSDNYFFGPIPASI 127 (388)
Q Consensus 109 L~~L~L~~n~l~~~~~~~l 127 (388)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.32 E-value=0.0001 Score=71.61 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=37.6
Q ss_pred cCCCCc-cCEEEccCCcCCCc----chHHhhcC-CCCCEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCCcCCC
Q 016534 221 FDGLTQ-LEVIELSENSFTGT----LEAWFFLL-PALQQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFNKIQG 288 (388)
Q Consensus 221 l~~l~~-L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~ 288 (388)
+...+. +.+|++..|.+.+. ....+... +.++.++++.|.++... +...+..++.++++.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 333444 55677777766532 12233334 45677777777776532 11223345677777777777664
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.24 E-value=0.00047 Score=67.04 Aligned_cols=180 Identities=32% Similarity=0.329 Sum_probs=123.4
Q ss_pred eEEEEeCCCCCCCC----CcccccCCCCCCEEEccCCcCCcc----CcccccCC-CCCCEEeeecCcCCC----CCchhh
Q 016534 85 VTQLTLDPAGYSGQ----LTPLISQLTQLTILDLSDNYFFGP----IPASISSL-SNLQMLTLRSNSFSS----SVPDSL 151 (388)
Q Consensus 85 l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~----~~p~~l 151 (388)
+..+.|.+|.+... +...+...+.|+.|++++|.+.+. +-..+... ..+++|++..|.+++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66778888888654 334567788999999999988743 22223332 467888888888775 345556
Q ss_pred cCCCCCCEEEccCCcCCC----CcCcccc----CCCCCcEEEcccCcCCCC--------CCCCCCCCCEEEccCCccCcc
Q 016534 152 TQLKNLDSLDLSYNSLSG----SLPKNTF----LMSSLRRLDLSYNKLTGS--------LPKLPPNLSELALKNNVLSGV 215 (388)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~----~~p~~l~----~~~~L~~L~l~~n~l~~~--------~~~~~~~L~~L~l~~n~~~~~ 215 (388)
.....++.++++.|.+.. .++..+. ...++++|.+.++.++.. ++.....+.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667889999999988741 1223333 467899999999887622 122223477789988887643
Q ss_pred c---CccccCCC-CccCEEEccCCcCCCc----chHHhhcCCCCCEEEccCCCCCCC
Q 016534 216 I---TKNSFDGL-TQLEVIELSENSFTGT----LEAWFFLLPALQQVNLSNNTLTRV 264 (388)
Q Consensus 216 ~---~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 264 (388)
. -...+..+ ..+++++++.|.++.. +...+..++.++++.+++|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 1 02234445 6789999999999753 445566778999999999988763
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.82 E-value=0.0041 Score=60.97 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=14.9
Q ss_pred CcCCCCCcEEEcCCCcCCCC--CCCCCCCCCC
Q 016534 342 FFTGDVPVAGSLGDNCLQGC--PVSSQLCSPS 371 (388)
Q Consensus 342 ~~~~~~L~~l~l~~n~l~~~--p~~~~~~~~L 371 (388)
+..++.+..+.+..+..... -..+..|+.+
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 34556666666665553221 2334555544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.33 E-value=0.054 Score=26.20 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=4.5
Q ss_pred CcEEEcCCCcCCC
Q 016534 348 PVAGSLGDNCLQG 360 (388)
Q Consensus 348 L~~l~l~~n~l~~ 360 (388)
|+.|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.01 E-value=0.0066 Score=52.12 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcE
Q 016534 271 DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVA 350 (388)
Q Consensus 271 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 350 (388)
......+.||++.|++.. .-..|.-++.+..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.++...+.+++
T Consensus 39 ~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 345667777777776653 2233444566667777777776 66666666666666666666543 46777777777777
Q ss_pred EEcCCCcCC
Q 016534 351 GSLGDNCLQ 359 (388)
Q Consensus 351 l~l~~n~l~ 359 (388)
++..+|.|.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.045 Score=46.11 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=33.9
Q ss_pred eEEEEeCCCCCCCCCcccccCCCCCCEEEccCCc-CCccCccccc-CCCCCCEEeeecC-cCCCCCchhhcCCCCCCEEE
Q 016534 85 VTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNY-FFGPIPASIS-SLSNLQMLTLRSN-SFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 85 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~ 161 (388)
|+.++-++..+..+--..+.+++.++.|.+.+|. +.+.--..++ -.++|+.|++++| +|++..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4555555555544434445555555555555552 2111111111 1234555555544 33433333334444444444
Q ss_pred cc
Q 016534 162 LS 163 (388)
Q Consensus 162 L~ 163 (388)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=0.043 Score=46.25 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=48.8
Q ss_pred ccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCC-CCCCCCEEEccCC-cCCCCCcccccCCCCCCEE
Q 016534 226 QLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVD-GRSDLVAVDLGFN-KIQGYLPVNFADYPMLSSL 303 (388)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 303 (388)
.++.+|.++..+..+--+.+..++.++.|.+.+|+--+..--+.++ ..++|+.|++++| +||+..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4667777777776655566667777777777776432211001111 2567777777766 4665545555666677766
Q ss_pred EccC
Q 016534 304 SMRY 307 (388)
Q Consensus 304 ~L~~ 307 (388)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 80
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=89.15 E-value=2.4 Score=40.66 Aligned_cols=109 Identities=21% Similarity=0.137 Sum_probs=56.4
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccc---cCCCCCCEEeeecCcCCCCCchhhcCC---C
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASI---SSLSNLQMLTLRSNSFSSSVPDSLTQL---K 155 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l---~ 155 (388)
.+++++++++.+.+....|..+..-.. -+.++.|.++...-..+ ..=..+.+++++.|...+.+|..+..+ .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 456777888877776666654432111 15555555443211111 011247778888888777777654322 3
Q ss_pred CCCEEEccCCcCC---CCcCccccCCCCCcEEEcccCcCC
Q 016534 156 NLDSLDLSYNSLS---GSLPKNTFLMSSLRRLDLSYNKLT 192 (388)
Q Consensus 156 ~L~~L~L~~n~l~---~~~p~~l~~~~~L~~L~l~~n~l~ 192 (388)
-+++++.+...+. +.-+-....-+++...+++.|..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 4566666555443 111222233456666666666443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.23 E-value=0.0084 Score=51.50 Aligned_cols=83 Identities=24% Similarity=0.195 Sum_probs=39.2
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
..+++.||++.+++. .....|+.++.|..|+++.|.+. -.|..++.+..++++++..|... ..|.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345555555555443 12223344444555555555443 34444444444444544444444 4444455555555555
Q ss_pred ccCCcC
Q 016534 162 LSYNSL 167 (388)
Q Consensus 162 L~~n~l 167 (388)
+.+|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 544443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.78 E-value=0.52 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.0
Q ss_pred CCCEEEccCCcCCC
Q 016534 275 DLVAVDLGFNKIQG 288 (388)
Q Consensus 275 ~L~~L~L~~n~l~~ 288 (388)
+|++|+|++|+++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.78 E-value=0.52 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.0
Q ss_pred CCCEEEccCCcCCC
Q 016534 275 DLVAVDLGFNKIQG 288 (388)
Q Consensus 275 ~L~~L~L~~n~l~~ 288 (388)
+|++|+|++|+++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.07 E-value=0.33 Score=25.63 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=7.5
Q ss_pred CccCEEEccCCcCCCc
Q 016534 225 TQLEVIELSENSFTGT 240 (388)
Q Consensus 225 ~~L~~L~l~~n~l~~~ 240 (388)
++|++|++++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555666666555433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.58 E-value=1.7 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=13.4
Q ss_pred CCCcEEEcCCCcCCCCCC
Q 016534 346 DVPVAGSLGDNCLQGCPV 363 (388)
Q Consensus 346 ~~L~~l~l~~n~l~~~p~ 363 (388)
+.|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356778888888887776
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.38 E-value=4 Score=22.14 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=6.9
Q ss_pred CCCEEEccCCCCCC
Q 016534 250 ALQQVNLSNNTLTR 263 (388)
Q Consensus 250 ~L~~L~L~~n~l~~ 263 (388)
+|+.|+++.|+++.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 44555555555443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.61 E-value=5.6 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=8.1
Q ss_pred CCCCEEEccCCcCC
Q 016534 274 SDLVAVDLGFNKIQ 287 (388)
Q Consensus 274 ~~L~~L~L~~n~l~ 287 (388)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.49 E-value=37 Score=32.91 Aligned_cols=61 Identities=28% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCEEEccCCcCCccCcccccCC---CCCCEEeeecCcCCC---CCchhhcCCCCCCEEEccCCcCC
Q 016534 108 QLTILDLSDNYFFGPIPASISSL---SNLQMLTLRSNSFSS---SVPDSLTQLKNLDSLDLSYNSLS 168 (388)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~ 168 (388)
.+++++++.|.....+|..+..+ .-++.++.+...+.- .-+-..+.-++++..+++.|...
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 46777888777766666554322 235666666554431 11222334456777666666543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.18 E-value=7.4 Score=38.19 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCCCCEEEccCCcCCCCC--cccccCCCCCCEEEccCC--cccccCCccccC--CCCCcEEeCcCCcCccCC
Q 016534 272 GRSDLVAVDLGFNKIQGYL--PVNFADYPMLSSLSMRYN--RLRGGIPLEFSH--KKSLKRLFLDGNFLIGKA 338 (388)
Q Consensus 272 ~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~--l~~L~~L~Ls~n~l~~~~ 338 (388)
+.+.+..+.|++|++.... ...-...|+|+.|+|++| .+. --.++.+ ...|++|-+.||++....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 4677788889999876431 111234688999999998 333 1122333 245788889999887653
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.36 E-value=7.6 Score=38.12 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=5.9
Q ss_pred CCCCCEEEccCC
Q 016534 273 RSDLVAVDLGFN 284 (388)
Q Consensus 273 ~~~L~~L~L~~n 284 (388)
.+.|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344555555554
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.36 E-value=16 Score=19.47 Aligned_cols=11 Identities=45% Similarity=0.459 Sum_probs=6.1
Q ss_pred CCCCEEEccCC
Q 016534 107 TQLTILDLSDN 117 (388)
Q Consensus 107 ~~L~~L~L~~n 117 (388)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.97 E-value=26 Score=25.98 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHHh
Q 016534 7 SNAASCFLLVIVQISL 22 (388)
Q Consensus 7 ~~~~~~~~l~~~~~~~ 22 (388)
|-+++++.++++.+..
T Consensus 3 SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLL 18 (95)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4334444444433333
No 93
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=25.43 E-value=72 Score=17.77 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=8.4
Q ss_pred CcchhhhHHHH-HHHHHHHHHHh
Q 016534 1 MKLSSISNAAS-CFLLVIVQISL 22 (388)
Q Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~~ 22 (388)
|++|.-.+.+. +++|++..+..
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s~Ls~ 23 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFSHLSS 23 (30)
T ss_dssp --SS-SSHHHHHHHHHHHHHTTT
T ss_pred CccchhhHHHHHHHHHHHHHhhH
Confidence 66676553333 34444444433
No 94
>PRK09718 hypothetical protein; Validated
Probab=22.97 E-value=2.6e+02 Score=27.51 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=5.0
Q ss_pred CCcEEEcCCCcC
Q 016534 347 VPVAGSLGDNCL 358 (388)
Q Consensus 347 ~L~~l~l~~n~l 358 (388)
.|+..|++.+.+
T Consensus 229 ~LkgVDFSdC~L 240 (512)
T PRK09718 229 RISTGNFKDCIT 240 (512)
T ss_pred cCCCcccccccc
Confidence 344444444433
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.04 E-value=52 Score=39.19 Aligned_cols=32 Identities=25% Similarity=0.178 Sum_probs=28.1
Q ss_pred EccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 280 DLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 280 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999888888888999999999999776
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.07 E-value=62 Score=38.59 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=28.3
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 016534 255 NLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGY 289 (388)
Q Consensus 255 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 289 (388)
+|++|+|+.++ +..|..+.+|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp-~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIE-EGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccC-hHHhccCCCceEEEeeCCccccc
Confidence 58899999865 55677899999999999998753
Done!