Query 016534
Match_columns 388
No_of_seqs 349 out of 4272
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-45 1.2E-49 376.7 21.5 345 22-386 4-385 (768)
2 4eco_A Uncharacterized protein 100.0 1E-43 3.4E-48 358.3 24.4 345 26-387 26-560 (636)
3 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-43 5.6E-48 326.7 20.9 298 26-362 2-308 (313)
4 4ecn_A Leucine-rich repeat pro 100.0 2.7E-41 9.2E-46 347.6 26.8 247 25-287 264-632 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.1E-41 3.9E-46 350.7 19.4 304 83-388 318-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 3.2E-39 1.1E-43 313.2 26.4 303 83-387 30-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.6E-36 5.6E-41 296.0 24.7 301 82-384 31-335 (477)
8 4eco_A Uncharacterized protein 100.0 3.9E-37 1.3E-41 310.3 20.8 299 81-387 204-583 (636)
9 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-36 2.5E-40 294.5 22.2 106 83-191 21-127 (520)
10 3t6q_A CD180 antigen; protein- 100.0 3.8E-35 1.3E-39 294.6 27.5 299 82-383 32-414 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-35 1.1E-39 295.2 24.9 110 83-192 56-166 (606)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-35 1.5E-39 291.6 24.9 296 83-385 52-513 (562)
13 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-35 2.6E-39 292.4 25.7 132 82-213 31-166 (606)
14 3t6q_A CD180 antigen; protein- 100.0 6.7E-35 2.3E-39 292.8 24.4 299 84-386 255-564 (606)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-35 1.7E-39 290.3 23.0 180 83-263 26-210 (549)
16 3v47_A TOLL-like receptor 5B a 100.0 1.2E-34 4E-39 281.0 24.5 280 81-362 52-412 (455)
17 4ecn_A Leucine-rich repeat pro 100.0 4.9E-35 1.7E-39 301.1 22.6 298 81-387 446-823 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-34 5.8E-39 284.7 22.4 294 81-384 43-483 (520)
19 2z63_A TOLL-like receptor 4, v 100.0 4.5E-34 1.5E-38 284.6 25.4 143 245-387 392-536 (570)
20 2id5_A Lingo-1, leucine rich r 100.0 1.3E-33 4.3E-38 275.5 27.7 294 87-385 15-312 (477)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-34 1.7E-38 284.1 25.1 270 81-359 74-510 (562)
22 4fcg_A Uncharacterized protein 100.0 1.1E-34 3.9E-39 269.1 18.6 283 26-361 23-316 (328)
23 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-34 1.9E-38 296.2 24.8 300 82-383 23-376 (844)
24 3oja_B Anopheles plasmodium-re 100.0 7.9E-34 2.7E-38 284.4 25.0 286 83-382 51-358 (597)
25 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.5E-38 268.4 24.3 285 83-382 45-352 (390)
26 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-34 3.6E-39 267.7 14.1 251 107-383 50-306 (313)
27 2z63_A TOLL-like receptor 4, v 100.0 2.3E-33 7.9E-38 279.5 24.6 302 82-387 51-512 (570)
28 3o6n_A APL1; leucine-rich repe 100.0 2.5E-33 8.7E-38 266.4 23.5 273 105-384 43-333 (390)
29 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-32 4.4E-37 279.9 29.8 303 84-386 249-601 (680)
30 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-33 3.1E-37 281.0 27.7 296 83-380 25-364 (680)
31 3j0a_A TOLL-like receptor 5; m 100.0 9.7E-33 3.3E-37 286.9 28.2 296 81-382 46-394 (844)
32 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-33 5.7E-38 279.4 20.4 112 82-193 49-162 (549)
33 4fmz_A Internalin; leucine ric 100.0 1.1E-31 3.6E-36 251.1 27.1 281 82-382 65-346 (347)
34 1xku_A Decorin; proteoglycan, 100.0 8.6E-32 2.9E-36 250.1 26.3 286 84-380 32-330 (330)
35 3oja_B Anopheles plasmodium-re 100.0 3.3E-32 1.1E-36 272.6 24.0 273 105-384 49-339 (597)
36 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-32 2.3E-36 251.0 23.4 285 84-380 34-331 (332)
37 1xku_A Decorin; proteoglycan, 100.0 6.4E-31 2.2E-35 244.2 28.8 266 108-382 32-306 (330)
38 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-30 5E-35 251.9 30.0 274 83-383 64-353 (457)
39 1o6v_A Internalin A; bacterial 100.0 5.2E-31 1.8E-35 256.3 26.9 281 82-383 67-389 (466)
40 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-31 1.3E-35 266.3 26.8 111 83-193 52-162 (635)
41 4fmz_A Internalin; leucine ric 100.0 6.6E-31 2.3E-35 245.7 26.3 283 82-386 43-328 (347)
42 1o6v_A Internalin A; bacterial 100.0 7.4E-31 2.5E-35 255.2 26.1 264 82-365 89-394 (466)
43 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-31 2E-35 244.7 23.0 265 108-382 34-307 (332)
44 3zyi_A Leucine-rich repeat-con 100.0 5.3E-30 1.8E-34 248.2 27.1 244 87-358 58-302 (452)
45 2z80_A TOLL-like receptor 2, v 100.0 2.2E-31 7.5E-36 249.7 14.1 263 91-359 39-314 (353)
46 4fcg_A Uncharacterized protein 100.0 1.8E-30 6.1E-35 240.9 20.0 234 105-381 79-313 (328)
47 1jl5_A Outer protein YOPM; leu 100.0 1.1E-30 3.8E-35 252.6 19.1 187 83-287 34-250 (454)
48 1jl5_A Outer protein YOPM; leu 100.0 3.7E-29 1.3E-33 241.9 28.9 273 83-388 111-417 (454)
49 2z66_A Variable lymphocyte rec 100.0 1.1E-30 3.7E-35 240.0 15.5 244 87-336 11-262 (306)
50 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-29 1.8E-33 241.1 25.6 276 82-383 41-332 (457)
51 3zyj_A Leucine-rich repeat-con 100.0 1.3E-28 4.4E-33 237.7 26.8 243 86-334 46-291 (440)
52 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-28 8.2E-33 245.9 26.4 301 82-383 75-581 (635)
53 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-29 1.1E-33 228.0 17.8 227 86-338 14-241 (285)
54 3g06_A SSPH2 (leucine-rich rep 100.0 5.6E-29 1.9E-33 248.2 20.0 262 83-386 40-301 (622)
55 3o53_A Protein LRIM1, AGAP0063 100.0 7.8E-31 2.7E-35 242.2 5.8 264 84-360 11-277 (317)
56 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.8E-33 226.6 19.7 247 110-359 10-261 (306)
57 3zyi_A Leucine-rich repeat-con 100.0 7.2E-28 2.5E-32 233.2 25.3 245 110-382 57-303 (452)
58 1wwl_A Monocyte differentiatio 100.0 3.7E-31 1.3E-35 243.9 2.0 250 103-383 39-310 (312)
59 3zyj_A Leucine-rich repeat-con 100.0 1.1E-27 3.8E-32 231.1 25.3 244 109-359 45-292 (440)
60 2z80_A TOLL-like receptor 2, v 100.0 1.9E-28 6.5E-33 229.7 18.4 254 83-339 52-318 (353)
61 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-28 4.3E-33 223.9 16.3 224 110-359 14-238 (285)
62 1wwl_A Monocyte differentiatio 100.0 5.1E-30 1.7E-34 236.2 6.8 246 82-359 42-309 (312)
63 3o53_A Protein LRIM1, AGAP0063 100.0 2.1E-30 7.3E-35 239.3 3.8 265 109-386 12-280 (317)
64 3oja_A Leucine-rich immune mol 100.0 6E-29 2.1E-33 242.6 9.9 237 105-354 32-270 (487)
65 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-31 1.9E-35 255.6 -8.8 299 83-382 56-411 (461)
66 3oja_A Leucine-rich immune mol 99.9 4.3E-28 1.5E-32 236.6 8.7 236 129-377 32-270 (487)
67 2o6q_A Variable lymphocyte rec 99.9 6.2E-26 2.1E-30 204.5 22.1 217 61-311 2-218 (270)
68 1z7x_W Ribonuclease inhibitor; 99.9 7.6E-30 2.6E-34 247.5 -5.5 300 83-383 28-384 (461)
69 2z62_A TOLL-like receptor 4, v 99.9 1.1E-25 3.9E-30 203.4 19.3 214 98-337 21-239 (276)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-24 9.8E-29 214.3 29.0 238 83-360 61-298 (622)
71 3rfs_A Internalin B, repeat mo 99.9 2E-25 6.7E-30 201.4 17.1 225 110-370 22-247 (272)
72 2z62_A TOLL-like receptor 4, v 99.9 7.6E-25 2.6E-29 198.0 21.0 222 112-359 12-237 (276)
73 1p9a_G Platelet glycoprotein I 99.9 1.8E-24 6E-29 197.0 22.6 203 151-382 6-208 (290)
74 2o6q_A Variable lymphocyte rec 99.9 4.4E-24 1.5E-28 192.4 23.8 200 155-359 16-218 (270)
75 1p9a_G Platelet glycoprotein I 99.9 5.7E-24 1.9E-28 193.6 21.5 198 84-311 11-208 (290)
76 3rfs_A Internalin B, repeat mo 99.9 1.2E-24 4.1E-29 196.3 16.6 211 103-347 37-247 (272)
77 4glp_A Monocyte differentiatio 99.9 3E-25 1E-29 204.1 11.1 230 132-383 65-308 (310)
78 3goz_A Leucine-rich repeat-con 99.9 1.2E-26 4E-31 218.2 1.4 253 87-339 2-301 (362)
79 2ast_B S-phase kinase-associat 99.9 7.1E-26 2.4E-30 210.5 4.1 257 74-360 40-307 (336)
80 4glp_A Monocyte differentiatio 99.9 3.9E-24 1.3E-28 196.7 15.4 223 107-336 64-308 (310)
81 2ast_B S-phase kinase-associat 99.9 1.8E-25 6.2E-30 207.8 4.0 251 108-387 48-311 (336)
82 2ca6_A RAN GTPase-activating p 99.9 1.7E-25 5.9E-30 212.1 2.6 244 98-359 23-316 (386)
83 3goz_A Leucine-rich repeat-con 99.9 4.6E-26 1.6E-30 214.2 -1.5 248 111-360 2-298 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 4.7E-23 1.6E-27 182.2 16.3 197 107-332 31-236 (239)
85 2ca6_A RAN GTPase-activating p 99.9 7.3E-26 2.5E-30 214.7 -2.0 246 123-386 24-320 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 4.4E-23 1.5E-27 182.4 14.9 153 221-379 76-236 (239)
87 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.1E-27 185.3 18.0 190 83-311 41-230 (308)
88 3m19_A Variable lymphocyte rec 99.9 5.1E-22 1.7E-26 176.9 20.3 178 156-359 15-192 (251)
89 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.2E-27 185.3 17.4 195 103-336 37-231 (308)
90 3m19_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 174.9 20.3 178 203-385 17-195 (251)
91 3ogk_B Coronatine-insensitive 99.9 5.6E-25 1.9E-29 219.9 -4.2 298 85-384 140-528 (592)
92 3ogk_B Coronatine-insensitive 99.9 1.6E-24 5.5E-29 216.6 -1.9 179 200-378 342-547 (592)
93 4ay9_X Follicle-stimulating ho 99.9 1.7E-20 5.9E-25 175.2 20.7 236 88-332 14-256 (350)
94 3cvr_A Invasion plasmid antige 99.9 1.1E-21 3.7E-26 193.5 12.8 212 54-321 34-253 (571)
95 2o6s_A Variable lymphocyte rec 99.9 1.4E-20 4.7E-25 162.6 17.3 180 182-370 10-190 (208)
96 2o6s_A Variable lymphocyte rec 99.9 9.6E-21 3.3E-25 163.6 16.3 178 158-347 10-190 (208)
97 3cvr_A Invasion plasmid antige 99.9 1.1E-20 3.6E-25 186.4 17.2 185 156-367 60-252 (571)
98 4ay9_X Follicle-stimulating ho 99.9 7.6E-21 2.6E-25 177.7 15.2 237 110-356 12-256 (350)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-19 6.2E-24 157.0 15.5 156 183-339 15-170 (220)
100 1h6t_A Internalin B; cell adhe 99.8 1.8E-19 6.3E-24 163.8 15.5 185 89-312 30-214 (291)
101 2p1m_B Transport inhibitor res 99.8 9E-23 3.1E-27 204.0 -7.7 297 83-381 105-518 (594)
102 1h6t_A Internalin B; cell adhe 99.8 2.4E-19 8.4E-24 163.0 15.6 172 176-362 43-216 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-19 7.7E-24 156.4 14.0 153 202-359 13-166 (220)
104 1m9s_A Internalin B; cell inva 99.8 3.3E-19 1.1E-23 177.5 16.5 172 103-311 39-210 (605)
105 2v9t_B SLIT homolog 2 protein 99.8 9.5E-19 3.3E-23 152.4 17.0 152 183-336 15-166 (220)
106 1m9s_A Internalin B; cell inva 99.8 2.6E-19 9E-24 178.2 14.6 192 109-339 23-214 (605)
107 4ezg_A Putative uncharacterize 99.8 1.8E-19 6.1E-24 154.3 11.5 155 222-383 41-195 (197)
108 2p1m_B Transport inhibitor res 99.8 8.8E-22 3E-26 196.8 -4.0 156 224-380 371-542 (594)
109 4b8c_D Glucose-repressible alc 99.8 7.3E-21 2.5E-25 193.8 1.7 266 27-358 129-403 (727)
110 2xot_A Amphoterin-induced prot 99.8 4.3E-19 1.5E-23 166.5 13.6 173 158-335 21-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 8E-23 150.0 15.8 152 203-359 14-165 (220)
112 3e6j_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 148.7 17.6 155 181-338 21-175 (229)
113 3e6j_A Variable lymphocyte rec 99.8 6.3E-18 2.1E-22 148.2 17.4 148 158-311 22-172 (229)
114 2xot_A Amphoterin-induced prot 99.8 1.2E-18 4.1E-23 163.4 13.4 177 110-312 21-203 (361)
115 1dce_A Protein (RAB geranylger 99.8 8.9E-22 3E-26 194.8 -9.8 120 250-375 442-566 (567)
116 1dce_A Protein (RAB geranylger 99.8 2.3E-21 7.9E-26 191.8 -10.7 204 128-353 346-567 (567)
117 4ezg_A Putative uncharacterize 99.7 1.2E-17 4E-22 142.9 12.2 135 220-360 61-195 (197)
118 1xeu_A Internalin C; cellular 99.7 3.9E-18 1.3E-22 152.7 9.4 151 127-289 37-187 (263)
119 1xeu_A Internalin C; cellular 99.7 7.4E-18 2.5E-22 150.9 11.2 170 178-363 18-189 (263)
120 2ell_A Acidic leucine-rich nuc 99.7 3.4E-17 1.2E-21 136.2 10.4 137 224-363 23-164 (168)
121 1w8a_A SLIT protein; signaling 99.7 9.2E-17 3.1E-21 136.8 12.7 132 203-339 11-143 (192)
122 3sb4_A Hypothetical leucine ri 99.7 6.5E-17 2.2E-21 149.6 10.7 279 83-375 25-327 (329)
123 1w8a_A SLIT protein; signaling 99.7 3.1E-16 1E-20 133.5 13.6 130 227-359 10-139 (192)
124 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 132.7 10.2 135 247-383 22-161 (168)
125 4b8c_D Glucose-repressible alc 99.7 2.5E-17 8.4E-22 167.8 6.6 180 99-311 216-404 (727)
126 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 3E-21 131.0 8.2 128 224-354 16-148 (149)
127 3sb4_A Hypothetical leucine ri 99.7 4.5E-17 1.5E-21 150.7 4.8 253 97-383 13-311 (329)
128 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.2E-21 129.5 7.4 129 248-378 16-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 2.1E-15 7.1E-20 126.5 14.3 131 226-360 8-138 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 2.5E-15 8.5E-20 127.9 12.6 128 203-336 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 123.4 14.6 111 226-337 29-139 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 6.4E-15 2.2E-19 125.4 14.5 128 227-359 12-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.6 1.4E-15 4.9E-20 127.4 7.6 134 220-359 14-153 (176)
134 4fdw_A Leucine rich hypothetic 99.6 9.9E-14 3.4E-18 131.4 21.1 261 105-379 111-380 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 4.5E-15 1.5E-19 124.4 8.4 129 246-380 16-151 (176)
136 4fdw_A Leucine rich hypothetic 99.5 6.2E-13 2.1E-17 125.9 20.2 245 101-359 130-383 (401)
137 1ds9_A Outer arm dynein; leuci 99.5 7.7E-17 2.6E-21 137.9 -8.2 112 150-288 43-154 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 1.2E-16 4.2E-21 136.7 -7.7 150 85-262 20-185 (198)
139 3g39_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 111.7 12.7 109 226-338 10-118 (170)
140 2r9u_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 111.7 12.7 106 227-336 14-119 (174)
141 3g39_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 112.4 11.4 107 202-313 11-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 108.2 13.3 105 86-193 15-119 (174)
143 3un9_A NLR family member X1; l 99.4 1.1E-14 3.7E-19 136.6 -4.8 159 200-359 72-252 (372)
144 4fs7_A Uncharacterized protein 99.3 1.2E-10 4.2E-15 110.1 18.4 106 81-189 69-195 (394)
145 3un9_A NLR family member X1; l 99.3 2E-13 6.9E-18 128.0 -2.3 181 178-358 71-282 (372)
146 2ifg_A High affinity nerve gro 99.3 2.9E-11 9.9E-16 112.3 11.8 106 228-337 11-118 (347)
147 2ifg_A High affinity nerve gro 99.2 4.5E-11 1.5E-15 111.0 11.0 104 252-359 11-116 (347)
148 4fs7_A Uncharacterized protein 99.2 6.8E-10 2.3E-14 104.9 18.0 267 101-378 65-375 (394)
149 4gt6_A Cell surface protein; l 99.1 2.9E-09 9.9E-14 100.6 19.9 284 85-380 66-389 (394)
150 2ra8_A Uncharacterized protein 99.0 9E-11 3.1E-15 109.2 4.6 132 224-357 192-341 (362)
151 4gt6_A Cell surface protein; l 99.0 5.4E-08 1.8E-12 91.8 23.3 268 102-379 58-367 (394)
152 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.1E-14 101.6 8.0 206 82-309 106-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 6.9E-07 2.4E-11 83.7 22.1 260 84-355 47-342 (379)
154 4h09_A Hypothetical leucine ri 98.7 2.8E-06 9.6E-11 79.5 22.4 251 81-345 67-355 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 7.3E-09 2.5E-13 87.0 0.4 116 220-335 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 6.5E-09 2.2E-13 87.3 -0.9 120 240-359 27-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 2.3E-08 8E-13 88.4 1.0 104 223-328 139-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.1E-07 2.4E-11 78.9 5.9 83 222-305 167-258 (267)
159 3e4g_A ATP synthase subunit S, 98.1 7.9E-07 2.7E-11 73.1 1.7 82 250-332 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.1 2.1E-06 7E-11 70.6 3.7 84 83-166 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 3.8E-05 1.3E-09 64.3 1.5 112 222-333 38-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 2.5E-05 8.5E-10 65.4 -1.1 118 241-358 33-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0037 1.2E-07 48.6 7.4 57 253-311 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0034 1.2E-07 48.7 6.6 57 277-335 11-68 (130)
165 2lz0_A Uncharacterized protein 54.1 36 0.0012 24.2 6.2 39 124-163 13-51 (100)
166 2lz0_A Uncharacterized protein 44.1 61 0.0021 23.0 6.1 37 269-306 15-51 (100)
167 1z65_A PRPLP, prion-like prote 41.8 14 0.0005 19.6 1.6 23 1-23 1-24 (30)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-45 Score=376.65 Aligned_cols=345 Identities=25% Similarity=0.287 Sum_probs=256.4
Q ss_pred hhhcCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCceEEEEeCCCCCCCC---
Q 016534 22 LAVALTSPQDISALKAFKASIKPSSIQPWSCLASWDFTATDPCALPRRTHFTCGLLCSSDSTRVTQLTLDPAGYSGQ--- 98 (388)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~~~~C~~~~~~~~~~g~~c~~~~~~l~~L~l~~~~l~~~--- 98 (388)
+++++..++|++||++||+++. +|. .+++|... .|||.| .||+|+ .++|++|+|+++++.|.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~----~~~-~l~~W~~~-~~~C~w-------~gv~C~--~~~v~~L~L~~~~l~g~~~~ 68 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP----DKN-LLPDWSSN-KNPCTF-------DGVTCR--DDKVTSIDLSSKPLNVGFSA 68 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS----CTT-SSTTCCTT-SCGGGS-------TTEEEE--TTEEEEEECTTSCCCEEHHH
T ss_pred CccccCCHHHHHHHHHHHhhCC----Ccc-cccCCCCC-CCCcCC-------cceEEC--CCcEEEEECCCCCcCCccCc
Confidence 3444557789999999999983 555 78999855 799999 899998 48999999999999886
Q ss_pred Ccc-----------------------cccCCCCCCEEEccCCcCCccCcc--cccCCCCCCEEeeecCcCCCCCchhh-c
Q 016534 99 LTP-----------------------LISQLTQLTILDLSDNYFFGPIPA--SISSLSNLQMLTLRSNSFSSSVPDSL-T 152 (388)
Q Consensus 99 ~~~-----------------------~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~ 152 (388)
+++ .++++++|++|+|++|.++|.+|. .++++++|++|++++|.+.+..|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 554 566667777777777777776666 67777777777777777776666655 6
Q ss_pred CCCCCCEEEccCCcCCCCcCcc---ccCCCCCcEEEcccCcCCCCCCC-CCCCCCEEEccCCccCcccCccccCCCCccC
Q 016534 153 QLKNLDSLDLSYNSLSGSLPKN---TFLMSSLRRLDLSYNKLTGSLPK-LPPNLSELALKNNVLSGVITKNSFDGLTQLE 228 (388)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 228 (388)
++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+. ..++|++|++++|.+.+.+ +. ++++++|+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~ 226 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PF-LGDCSALQ 226 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCC-CB-CTTCCSCC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCC-cc-cccCCCCC
Confidence 6777777777777777666655 66777788888877777765553 3478999999999998876 44 88999999
Q ss_pred EEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCEEEccC
Q 016534 229 VIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADY-PMLSSLSMRY 307 (388)
Q Consensus 229 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~ 307 (388)
+|++++|.+++.+|..+..+++|++|++++|++++ .+|.. .+++|++|++++|.+++.+|..+... ++|++|++++
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 99999999998899999999999999999998876 33433 56777777777777776666666553 7777777777
Q ss_pred CcccccCCccccCCCCCcEEeCcCCcCccCCCcc-CcCCCCCcEEEcCCCcCC-CCCCCCCCCC-CCccccccccCCCCC
Q 016534 308 NRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIG-FFTGDVPVAGSLGDNCLQ-GCPVSSQLCS-PSQKSYSVCKQAYGR 384 (388)
Q Consensus 308 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~l~l~~n~l~-~~p~~~~~~~-~L~~l~l~~n~~~~~ 384 (388)
|.+++.+|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|.++ .+|..+..++ +|+.|++++|.+.+.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 7777777777777777777777777777666654 666777777777777665 5666666555 566666666665555
Q ss_pred CC
Q 016534 385 RP 386 (388)
Q Consensus 385 ip 386 (388)
+|
T Consensus 384 ~~ 385 (768)
T 3rgz_A 384 IL 385 (768)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-43 Score=358.33 Aligned_cols=345 Identities=23% Similarity=0.281 Sum_probs=232.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCccceeeCCCCCceEEEEeCCCCCCCC
Q 016534 26 LTSPQDISALKAFKASIKPSSIQPWSC-------LASWDFTATDPCALPRRTHFTCGLLCSSDSTRVTQLTLDPAGYSGQ 98 (388)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~W~~~~~~~C~~~~~~~~~~g~~c~~~~~~l~~L~l~~~~l~~~ 98 (388)
+....|++||.+++.+++. ++|.. ..+|+.. .|+|.|.. +.||.|+.. ++|++|+|+++++.|.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~---~~w~~~~~~~~~~~~W~~~-~~~c~w~~----~~GV~C~~~-~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNG---KNWSQQGFGTQPGANWNFN-KELDMWGA----QPGVSLNSN-GRVTGLSLEGFGASGR 96 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTG---GGCCCCC------CCCCCS-SCGGGTTC----CTTEEECTT-CCEEEEECTTSCCEEE
T ss_pred hhHHHHHHHHHHHHHHcCC---CCcccCCcCCccCCCCCCC-CCcccccC----CCCeEEcCC-CCEEEEEecCcccCCc
Confidence 3455799999999999842 34543 3489876 88998833 269999864 8999999999999999
Q ss_pred CcccccCCCCCCEEEccCCcC-----------------------------------------------------------
Q 016534 99 LTPLISQLTQLTILDLSDNYF----------------------------------------------------------- 119 (388)
Q Consensus 99 ~~~~l~~l~~L~~L~L~~n~l----------------------------------------------------------- 119 (388)
+|+.++++++|++|+|++|.+
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 999999999999999998843
Q ss_pred -------------------CccCcccccCCCCCCEEeeecCcCCCC-----------------Cchhhc--CCCCCCEEE
Q 016534 120 -------------------FGPIPASISSLSNLQMLTLRSNSFSSS-----------------VPDSLT--QLKNLDSLD 161 (388)
Q Consensus 120 -------------------~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~ 161 (388)
++ +|.+++++++|++|++++|.+++. +|..++ ++++|++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 34 788899999999999999999985 899988 999999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCc-CCC-CCCCC---------CCCCCEEEccCCcc------------------
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNK-LTG-SLPKL---------PPNLSELALKNNVL------------------ 212 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~-l~~-~~~~~---------~~~L~~L~l~~n~~------------------ 212 (388)
+++|.+.+.+|..+..+++|++|++++|+ ++| .+|.. .++|++|++++|++
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEE
Confidence 99999999999999999999999999998 776 44411 13444455544444
Q ss_pred -------CcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCC-CCEEEccCCCCCCCCCCCCCCCCC--CCCEEEcc
Q 016534 213 -------SGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPA-LQQVNLSNNTLTRVGISKPVDGRS--DLVAVDLG 282 (388)
Q Consensus 213 -------~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~--~L~~L~L~ 282 (388)
.|.+ + .++.+++|++|++++|.++ .+|..+..+++ |++|++++|+++. +|..+.... +|++|+++
T Consensus 336 ~L~~N~l~g~i-p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 336 ECLYNQLEGKL-P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp ECCSCCCEEEC-C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECC
T ss_pred eCcCCcCccch-h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECc
Confidence 4444 2 3444444444444444444 44455555666 7777777777663 444444332 55555555
Q ss_pred CCcCCCCCccccc-------C------------------------CCCCCEEEccCCcccccCCccccC-C-------CC
Q 016534 283 FNKIQGYLPVNFA-------D------------------------YPMLSSLSMRYNRLRGGIPLEFSH-K-------KS 323 (388)
Q Consensus 283 ~n~l~~~~~~~l~-------~------------------------l~~L~~L~L~~n~l~~~~p~~~~~-l-------~~ 323 (388)
+|.+++.+|..+. . +++|++|++++|+++ .+|..... . ++
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 5555554444443 3 344444444444444 33322211 1 15
Q ss_pred CcEEeCcCCcCccCCCccCc--CCCCCcEEEcCCCcCCCCCCCCCCCCCCccccc------cccCCCCCCCC
Q 016534 324 LKRLFLDGNFLIGKAPIGFF--TGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYS------VCKQAYGRRPR 387 (388)
Q Consensus 324 L~~L~Ls~n~l~~~~p~~~~--~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l------~~n~~~~~ip~ 387 (388)
|+.|++++|+++ .+|..+. .+++|+.|++++|+++++|..+..+++|+.|++ ++|.+.+.+|+
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 566666666655 4555554 666666666666666666666666666666666 34556666664
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-43 Score=326.65 Aligned_cols=298 Identities=31% Similarity=0.457 Sum_probs=244.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCccceeeCCCC--CceEEEEeCCCCCCC--CC
Q 016534 26 LTSPQDISALKAFKASIKPSSIQPWSCLASWDFTATDPCA--LPRRTHFTCGLLCSSDS--TRVTQLTLDPAGYSG--QL 99 (388)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~~~~C~--~~~~~~~~~g~~c~~~~--~~l~~L~l~~~~l~~--~~ 99 (388)
.|.++|++||++||.++. ++. .+.+|..+ .|+|. | .||.|+... ++|++|+++++++.+ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~----~~~-~l~~W~~~-~~~C~~~w-------~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG----NPT-TLSSWLPT-TDCCNRTW-------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT----CCG-GGTTCCTT-SCTTTTCS-------TTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcC----Ccc-cccCCCCC-CCCCcCCC-------cceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 588999999999999983 343 67899765 78998 7 899998644 799999999999999 89
Q ss_pred cccccCCCCCCEEEccC-CcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCC
Q 016534 100 TPLISQLTQLTILDLSD-NYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLM 178 (388)
Q Consensus 100 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~ 178 (388)
|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|..+++|++|++++|.+++.+|..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 99999999999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCC-ccCEEEccCCcCCCcchHHhhcCCCCCEEEcc
Q 016534 179 SSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLT-QLEVIELSENSFTGTLEAWFFLLPALQQVNLS 257 (388)
Q Consensus 179 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 257 (388)
++|++|++++|++++.+ +..+..++ +|++|++++|.+++.+|..+..++ |++|+++
T Consensus 149 ~~L~~L~L~~N~l~~~~----------------------p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAI----------------------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp TTCCEEECCSSCCEEEC----------------------CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCCCeEECcCCcccCcC----------------------CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999888876433 44556665 778888888887777777777776 7888888
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccC
Q 016534 258 NNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGK 337 (388)
Q Consensus 258 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 337 (388)
+|++++ ..|..+..+++|++|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.
T Consensus 206 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 206 RNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SSEEEE-CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCcccC-cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 877776 3466677777788888888877765554 66777888888888888777787777778888888888888777
Q ss_pred CCccCcCCCCCcEEEcCCCc-CCCCC
Q 016534 338 APIGFFTGDVPVAGSLGDNC-LQGCP 362 (388)
Q Consensus 338 ~p~~~~~~~~L~~l~l~~n~-l~~~p 362 (388)
+|.. ..++.|+.+++++|+ +.+.|
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCC-ccccccChHHhcCCCCccCCC
Confidence 7765 667777777777775 33433
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-41 Score=347.56 Aligned_cols=247 Identities=21% Similarity=0.323 Sum_probs=181.3
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC----CCC--CCCCCCC--CCc---cceeeCCCCCceEEEEeCCC
Q 016534 25 ALTSPQDISALKAFKASIKPSSIQPWSCLASWDFTA----TDP--CALPRRT--HFT---CGLLCSSDSTRVTQLTLDPA 93 (388)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~----~~~--C~~~~~~--~~~---~g~~c~~~~~~l~~L~l~~~ 93 (388)
+++..+|++||++||.++. ++ +|+.+. .+| |.|.... ..| .||.|+. .++|+.|+|+++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~----~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD----GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT----GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT
T ss_pred cccchHHHHHHHHHHHHcC----CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC
Confidence 4456689999999999983 22 554432 355 8882111 112 7999986 589999999999
Q ss_pred CCCCCCcccccCCCCCCEEEc-cCCcCCcc--------------------------------------------------
Q 016534 94 GYSGQLTPLISQLTQLTILDL-SDNYFFGP-------------------------------------------------- 122 (388)
Q Consensus 94 ~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~-------------------------------------------------- 122 (388)
++.|.+|+.++++++|++|+| ++|.+.|.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 66654333
Q ss_pred --------------------------CcccccCCCCCCEEeeecCcCCC-----------------CCchhhc--CCCCC
Q 016534 123 --------------------------IPASISSLSNLQMLTLRSNSFSS-----------------SVPDSLT--QLKNL 157 (388)
Q Consensus 123 --------------------------~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L 157 (388)
+|..|+++++|++|+|++|.+++ .+|+.++ ++++|
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 78889999999999999999998 3888877 99999
Q ss_pred CEEEccCCcCCCCcCccccCCCCCcEEEcccCc-CCC-CCCC----------CCCCCCEEEccCCccCcccCcc--ccCC
Q 016534 158 DSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNK-LTG-SLPK----------LPPNLSELALKNNVLSGVITKN--SFDG 223 (388)
Q Consensus 158 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~-l~~-~~~~----------~~~~L~~L~l~~n~~~~~~~~~--~l~~ 223 (388)
++|++++|.+.+.+|..+..+++|++|++++|+ ++| .+|. ..++|++|++++|.+. .+ |. .+++
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~~l~~ 571 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF-PASASLQK 571 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHHHHTT
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc-CChhhhhc
Confidence 999999999999999999999999999999998 776 4442 1246777777777776 44 44 5666
Q ss_pred CCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCC-CCEEEccCCcCC
Q 016534 224 LTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSD-LVAVDLGFNKIQ 287 (388)
Q Consensus 224 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~ 287 (388)
+++|++|++++|.++ .+| .+..+++|+.|++++|+++. +|..+..+++ |++|++++|.++
T Consensus 572 L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc--chHHHhhccccCCEEECcCCCCC
Confidence 666666666666666 555 55555566666666665552 3444444444 555555555444
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-41 Score=350.66 Aligned_cols=304 Identities=30% Similarity=0.384 Sum_probs=249.1
Q ss_pred CceEEEEeCCCCCCCCCccc-ccCCCCCCEEEccCCcCCccCccc-------------------------ccC--CCCCC
Q 016534 83 TRVTQLTLDPAGYSGQLTPL-ISQLTQLTILDLSDNYFFGPIPAS-------------------------ISS--LSNLQ 134 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~-------------------------l~~--l~~L~ 134 (388)
.++++|++++|.+.|.+|.. +.++++|++|++++|.+++.+|.. +.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 45666666666666555544 555666666666555555444444 333 55677
Q ss_pred EEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCc
Q 016534 135 MLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNV 211 (388)
Q Consensus 135 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~ 211 (388)
+|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|.. .++|++|++++|+
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 7777777777777888888888888888888888888888888888888888888888777753 3789999999999
Q ss_pred cCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 016534 212 LSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLP 291 (388)
Q Consensus 212 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 291 (388)
+.+.+ +..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++ .+|..+..+++|++|++++|+++|.+|
T Consensus 478 l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 478 LTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred ccCcC-CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 98877 7788889999999999999998999999999999999999999987 568888889999999999998887666
Q ss_pred ccc----------------------------------------------------------------------cCCCCCC
Q 016534 292 VNF----------------------------------------------------------------------ADYPMLS 301 (388)
Q Consensus 292 ~~l----------------------------------------------------------------------~~l~~L~ 301 (388)
..+ ..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 543 2356789
Q ss_pred EEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC-CCCCCCCCCCCCccccccccC
Q 016534 302 SLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ-GCPVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 302 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~-~~p~~~~~~~~L~~l~l~~n~ 380 (388)
.|++++|+++|.+|..++.++.|+.|+|++|.++|.+|..++.++.|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999999999999999999999999999999999999999999999999999999998 688899999999999999999
Q ss_pred CCCCCCCC
Q 016534 381 AYGRRPRP 388 (388)
Q Consensus 381 ~~~~ip~~ 388 (388)
+.|.||++
T Consensus 716 l~g~iP~~ 723 (768)
T 3rgz_A 716 LSGPIPEM 723 (768)
T ss_dssp EEEECCSS
T ss_pred ccccCCCc
Confidence 99999973
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-39 Score=313.19 Aligned_cols=303 Identities=21% Similarity=0.191 Sum_probs=267.5
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccC-cccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPI-PASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
.++++|++++|.+.+..+..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67999999999999888889999999999999999987655 56789999999999999999988899999999999999
Q ss_pred ccCCcCCCCcCcc--ccCCCCCcEEEcccCcCCCCCCCC----CCCCCEEEccCCccCcccCccccC-------------
Q 016534 162 LSYNSLSGSLPKN--TFLMSSLRRLDLSYNKLTGSLPKL----PPNLSELALKNNVLSGVITKNSFD------------- 222 (388)
Q Consensus 162 L~~n~l~~~~p~~--l~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~l~------------- 222 (388)
+++|.+++..+.. +..+++|++|++++|.+.+..|.. .++|++|++++|.+.+.. +..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC-EEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC-TTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC-hhhhhccccccccccccc
Confidence 9999998766555 888999999999999998776642 388999999999988654 43333
Q ss_pred ---------------------CCCccCEEEccCCcCCCcchHHhhcC---------------------------------
Q 016534 223 ---------------------GLTQLEVIELSENSFTGTLEAWFFLL--------------------------------- 248 (388)
Q Consensus 223 ---------------------~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------- 248 (388)
.+++|++|++++|.+++..+..+...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 33689999999999987777665432
Q ss_pred ------CCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 249 ------PALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 249 ------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
++|++|++++|++++. .|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred cccccccCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 5789999999998873 577888999999999999999998899999999999999999999988899999999
Q ss_pred CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCC-CCCCCCCccccccccCCCCCCCC
Q 016534 323 SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 323 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
+|++|++++|.+++..|..+..+++|+.|++++|+++++|+. +..+++|+.|++++|++.+.+|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999999999988765 58999999999999999999884
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=295.99 Aligned_cols=301 Identities=18% Similarity=0.131 Sum_probs=271.4
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
..+++.|++++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45789999999999988888999999999999999999998899999999999999999999976667789999999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCC
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFT 238 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 238 (388)
+++|.+.+..+..+..+++|++|++++|.+.+..+.. .++|++|++++|++.+.. +..+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCc
Confidence 9999999888889999999999999999988655532 379999999999998654 667899999999999999999
Q ss_pred CcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccc
Q 016534 239 GTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEF 318 (388)
Q Consensus 239 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 318 (388)
+..+..+..+++|++|++++|.+.+ .++.......+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 8888889999999999999998776 456655566799999999999998766788999999999999999998888889
Q ss_pred cCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCC-CCCCCCCccccccccCCCCC
Q 016534 319 SHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAYGR 384 (388)
Q Consensus 319 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~ 384 (388)
..+++|+.|+|++|.+++..|..+..+++|+.|++++|.++.+|+. +..+++|+.|++++|++...
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999999999999999999999999999999988764 68899999999999987643
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.9e-37 Score=310.25 Aligned_cols=299 Identities=21% Similarity=0.284 Sum_probs=238.1
Q ss_pred CCCceEEEEeCCCCCCCC-----------------Cccccc--CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecC
Q 016534 81 DSTRVTQLTLDPAGYSGQ-----------------LTPLIS--QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSN 141 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 141 (388)
...++++|++++|.++|. +|..++ ++++|++|++++|.+.+.+|..|+++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 357899999999999986 999988 9999999999999999999999999999999999999
Q ss_pred c-CCC-CCchhhcCC------CCCCEEEccCCcCCCCcCc--cccCCCCCcEEEcccCcCCCCCCCCC--CC--------
Q 016534 142 S-FSS-SVPDSLTQL------KNLDSLDLSYNSLSGSLPK--NTFLMSSLRRLDLSYNKLTGSLPKLP--PN-------- 201 (388)
Q Consensus 142 ~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~l~~n~l~~~~~~~~--~~-------- 201 (388)
. ++| .+|..++.+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+.|.+|.+. ++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence 8 888 889888876 89999999999998 8888 88999999999999999887777321 34
Q ss_pred ----------------CCEEEccCCccCcccCccccCCCC--ccCEEEccCCcCCCcchHHhh-------cCCCCCEEEc
Q 016534 202 ----------------LSELALKNNVLSGVITKNSFDGLT--QLEVIELSENSFTGTLEAWFF-------LLPALQQVNL 256 (388)
Q Consensus 202 ----------------L~~L~l~~n~~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L 256 (388)
|++|++++|.+. .+ |..+...+ +|++|++++|.+++..|..+. .+++|++|++
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCS-SC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CccccccHhhhhhcccCcEEEccCCcCc-cc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 555555555554 23 33333322 555666666666555555555 5556777777
Q ss_pred cCCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCCcccccCC-------CCCCEEEccCCcccccCCcccc--CCCCCcE
Q 016534 257 SNNTLTRVGISKP-VDGRSDLVAVDLGFNKIQGYLPVNFADY-------PMLSSLSMRYNRLRGGIPLEFS--HKKSLKR 326 (388)
Q Consensus 257 ~~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~ 326 (388)
++|+++. +|.. +..+++|++|++++|+++...+..+... ++|++|++++|+++ .+|..+. .+++|+.
T Consensus 441 s~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 441 SNNQISK--FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG 517 (636)
T ss_dssp CSSCCCS--CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred cCCccCc--CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence 7777664 3332 3347888999999998885443344333 29999999999999 7888887 9999999
Q ss_pred EeCcCCcCccCCCccCcCCCCCcEEEcC------CCcCC-CCCCCCCCCCCCccccccccCCCCCCCC
Q 016534 327 LFLDGNFLIGKAPIGFFTGDVPVAGSLG------DNCLQ-GCPVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 327 L~Ls~n~l~~~~p~~~~~~~~L~~l~l~------~n~l~-~~p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
|+|++|++++ +|..+..+++|+.|+++ +|.+. .+|..++.+++|+.|++++|.+ +.||+
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 9999999998 89999999999999995 56655 6899999999999999999999 88886
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=294.49 Aligned_cols=106 Identities=28% Similarity=0.250 Sum_probs=62.6
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 45666666666666555555666666666666666666555556666666666666666665 34443 5566666666
Q ss_pred cCCcCCC-CcCccccCCCCCcEEEcccCcC
Q 016534 163 SYNSLSG-SLPKNTFLMSSLRRLDLSYNKL 191 (388)
Q Consensus 163 ~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l 191 (388)
++|.+++ .+|..+..+++|++|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccccccchhhhccCCcceEEEecCccc
Confidence 6666554 3455555555555555555544
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.8e-35 Score=294.64 Aligned_cols=299 Identities=19% Similarity=0.187 Sum_probs=202.6
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
...+++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 35789999999999988888999999999999999999988899999999999999999999988888999999999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCCC-CCCCC--CCCCCEEEccCCccCcccCccccCCCCccC--EEEccCCc
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTG-SLPKL--PPNLSELALKNNVLSGVITKNSFDGLTQLE--VIELSENS 236 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~--~L~l~~n~ 236 (388)
+++|.+++..+..+..+++|++|++++|.+.+ ..|.+ .++|++|++++|.+.+.. +..++.+++|+ .|++++|.
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC-hhhhhhhcccceeEEecCCCc
Confidence 99999996667788899999999999999886 33433 367888888888777543 44455555555 55555554
Q ss_pred CCC---------------------------------------------------------------------------cc
Q 016534 237 FTG---------------------------------------------------------------------------TL 241 (388)
Q Consensus 237 l~~---------------------------------------------------------------------------~~ 241 (388)
+++ ..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 443 33
Q ss_pred hHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcc-ccC
Q 016534 242 EAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLE-FSH 320 (388)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~ 320 (388)
+..+..+++|++|++++|+++. +|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. +..
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred HHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 3335556677777777777664 4556666677777777777766655555555555555555555555444332 444
Q ss_pred CCCCcEEeCcCCcCccCC--CccCcCCCCCcEEEcCCCcCCCC-CCCCCCCCCCccccccccCCCC
Q 016534 321 KKSLKRLFLDGNFLIGKA--PIGFFTGDVPVAGSLGDNCLQGC-PVSSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 321 l~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~l~l~~n~l~~~-p~~~~~~~~L~~l~l~~n~~~~ 383 (388)
+++|++|++++|.+++.. +..+..+++|+.|++++|.+.++ |..+..+++|+.|++++|++.+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 445555555554444433 33444444444444444444322 3334444444444444444433
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-35 Score=295.16 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=59.2
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.++++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 44555555555555444445555555555555555555544555555555555555555555444444555555555555
Q ss_pred cCCcCCC-CcCccccCCCCCcEEEcccCcCC
Q 016534 163 SYNSLSG-SLPKNTFLMSSLRRLDLSYNKLT 192 (388)
Q Consensus 163 ~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~ 192 (388)
++|.+.+ .+|..+..+++|++|++++|+++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 5555543 34555555555665555555544
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.4e-35 Score=291.60 Aligned_cols=296 Identities=20% Similarity=0.145 Sum_probs=196.2
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 56777777777777666667777777777777777777766777777777777777777776 45554 6777777777
Q ss_pred cCCcCCC-CcCccccCCCCCcEEEcccCcCCCCCCCCCC-----------------------------------------
Q 016534 163 SYNSLSG-SLPKNTFLMSSLRRLDLSYNKLTGSLPKLPP----------------------------------------- 200 (388)
Q Consensus 163 ~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~----------------------------------------- 200 (388)
++|.+++ .+|..+..+++|++|++++|.+.+......+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 7777764 3446667777777777777665432111111
Q ss_pred --------------------------------------------------------------------CCCEEEccCCcc
Q 016534 201 --------------------------------------------------------------------NLSELALKNNVL 212 (388)
Q Consensus 201 --------------------------------------------------------------------~L~~L~l~~n~~ 212 (388)
+|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 445555555555
Q ss_pred CcccCcccc-----------------------------------------------------CCCCccCEEEccCCcCCC
Q 016534 213 SGVITKNSF-----------------------------------------------------DGLTQLEVIELSENSFTG 239 (388)
Q Consensus 213 ~~~~~~~~l-----------------------------------------------------~~l~~L~~L~l~~n~l~~ 239 (388)
.|.+ |..+ ..+++|++|++++|.+++
T Consensus 289 ~~~i-p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 289 TERI-DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp CSCC-CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eccc-cchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 5444 2222 455666777777777766
Q ss_pred cchHHhhcCCCCCEEEccCCCCCCCC-CCCCCCCCCCCCEEEccCCcCCCCC-cccccCCCCCCEEEccCCcccccCCcc
Q 016534 240 TLEAWFFLLPALQQVNLSNNTLTRVG-ISKPVDGRSDLVAVDLGFNKIQGYL-PVNFADYPMLSSLSMRYNRLRGGIPLE 317 (388)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~ 317 (388)
..|..+..+++|++|++++|++++++ +|..+..+++|++|++++|++++.+ +..+..+++|++|++++|++++.+|..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 66666666777777777777766532 2334566677777777777776633 334566677777777777776666554
Q ss_pred ccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCC-CCCCCCCccccccccCCCCCC
Q 016534 318 FSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAYGRR 385 (388)
Q Consensus 318 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~i 385 (388)
+. ++|+.|++++|+++ .+|..++.++.|+.|++++|+++.+|.. +..+++|+.+++++|++.+..
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 43 56777777777776 5676666777888888888887777776 777777888888888777654
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-35 Score=292.45 Aligned_cols=132 Identities=21% Similarity=0.206 Sum_probs=116.2
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
..++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 46899999999999988888999999999999999999988899999999999999999999988899999999999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCCC-CCCCC---CCCCCEEEccCCccC
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTG-SLPKL---PPNLSELALKNNVLS 213 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~-~~~~~---~~~L~~L~l~~n~~~ 213 (388)
+++|.+++..+..+..+++|++|++++|.+.+ .+|.. .++|++|++++|.+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 99999997776889999999999999999985 44532 256666666665544
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-35 Score=292.82 Aligned_cols=299 Identities=20% Similarity=0.147 Sum_probs=268.3
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
.++.++++++.+.+..+..++.+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999888888999999999999999998 788889999999999999999998888899999999999999
Q ss_pred CCcCCCCcCcc-ccCCCCCcEEEcccCcCCCCC--C---CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC
Q 016534 164 YNSLSGSLPKN-TFLMSSLRRLDLSYNKLTGSL--P---KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237 (388)
Q Consensus 164 ~n~l~~~~p~~-l~~~~~L~~L~l~~n~l~~~~--~---~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 237 (388)
+|.+.+.+|.. +..+++|++|++++|.+.+.. + ...++|++|++++|++.+.. +..+..+++|++|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCcC
Confidence 99998777765 889999999999999998653 2 22489999999999998765 77899999999999999999
Q ss_pred CCcchH-HhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC---CcccccCCCCCCEEEccCCccccc
Q 016534 238 TGTLEA-WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGY---LPVNFADYPMLSSLSMRYNRLRGG 313 (388)
Q Consensus 238 ~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~ 313 (388)
++..+. .+..+++|++|++++|.+++. .+..+..+++|++|++++|++++. .+..+..+++|++|++++|++++.
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 876654 488999999999999999884 577888899999999999999873 235688999999999999999999
Q ss_pred CCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCC-CCCCCCCccccccccCCCCCCC
Q 016534 314 IPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~ip 386 (388)
.|..+..+++|+.|++++|++++..|..+..++.| .+++++|.++++|+. +..+++|+.+++++|++....+
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999999999999 999999999976654 7889999999999999876543
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-35 Score=290.27 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=142.7
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.++++|++++|.+++..+..+.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57999999999999888889999999999999999999888899999999999999999999888888999999999999
Q ss_pred cCCcCCC-CcCccccCCCCCcEEEcccCcCCCCCCC----CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC
Q 016534 163 SYNSLSG-SLPKNTFLMSSLRRLDLSYNKLTGSLPK----LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237 (388)
Q Consensus 163 ~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 237 (388)
++|.+++ ..|..+..+++|++|++++|.+.+.++. -.++|++|++++|.+.+.+ +..++.+++|++|++++|.+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhccccCceEecccCcc
Confidence 9999986 4577889999999999999986555542 2378999999999998866 66677666666666555554
Q ss_pred CCcchHHhhcCCCCCEEEccCCCCCC
Q 016534 238 TGTLEAWFFLLPALQQVNLSNNTLTR 263 (388)
Q Consensus 238 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 263 (388)
.......+..+++|++|++++|++++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 42222222334455555555544443
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-34 Score=281.03 Aligned_cols=280 Identities=22% Similarity=0.261 Sum_probs=239.3
Q ss_pred CCCceEEEEeCCCCCCCCCc-ccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchh--hcCCCCC
Q 016534 81 DSTRVTQLTLDPAGYSGQLT-PLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDS--LTQLKNL 157 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L 157 (388)
...++++|+++++.+.+.++ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|.. |..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 35678999999998876664 56888999999999999998888888999999999999999998765555 8889999
Q ss_pred CEEEccCCcCCCCcCcc-ccCCCCCcEEEcccCcCCCCCCCCC-------------------------------------
Q 016534 158 DSLDLSYNSLSGSLPKN-TFLMSSLRRLDLSYNKLTGSLPKLP------------------------------------- 199 (388)
Q Consensus 158 ~~L~L~~n~l~~~~p~~-l~~~~~L~~L~l~~n~l~~~~~~~~------------------------------------- 199 (388)
++|++++|.+++..|.. +..+++|++|++++|.+.+..+...
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999998776766 7888999999999998876544211
Q ss_pred CCCCEEEccCCccCcccCccccC---------------------------------------CCCccCEEEccCCcCCCc
Q 016534 200 PNLSELALKNNVLSGVITKNSFD---------------------------------------GLTQLEVIELSENSFTGT 240 (388)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~~~~l~---------------------------------------~l~~L~~L~l~~n~l~~~ 240 (388)
++|++|++++|.+.+.. +..+. ..++|++|++++|.+++.
T Consensus 212 ~~L~~L~Ls~n~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 212 TSITTLDLSGNGFKESM-AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CEEEEEECTTSCCCHHH-HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred ceeeeEecCCCcccccc-hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 46889999999876543 21111 125899999999999988
Q ss_pred chHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccC
Q 016534 241 LEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSH 320 (388)
Q Consensus 241 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 320 (388)
.|..+..+++|++|++++|+++++ .+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred chhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 999999999999999999999984 4778889999999999999999988999999999999999999999988999999
Q ss_pred CCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC-CCC
Q 016534 321 KKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ-GCP 362 (388)
Q Consensus 321 l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~-~~p 362 (388)
+++|++|++++|++++..+..+..+++|+.+++++|+++ .||
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999876667789999999999999998 455
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-35 Score=301.09 Aligned_cols=298 Identities=18% Similarity=0.234 Sum_probs=215.2
Q ss_pred CCCceEEEEeCCCCCCC-----------------CCccccc--CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecC
Q 016534 81 DSTRVTQLTLDPAGYSG-----------------QLTPLIS--QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSN 141 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 141 (388)
..++++.|+|++|.++| .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 35789999999999998 3888887 9999999999999999999999999999999999999
Q ss_pred c-CCC-CCchhhcCCC-------CCCEEEccCCcCCCCcCc--cccCCCCCcEEEcccCcCCCCCCCCC--CCCCEEEcc
Q 016534 142 S-FSS-SVPDSLTQLK-------NLDSLDLSYNSLSGSLPK--NTFLMSSLRRLDLSYNKLTGSLPKLP--PNLSELALK 208 (388)
Q Consensus 142 ~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~ 208 (388)
. +++ .+|..++.++ +|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.+. ++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECc
Confidence 8 887 7888776655 9999999999998 8888 8889999999999999888 676443 678888888
Q ss_pred CCccCcccCccccCCCCc-cCEEEccCCcCCCcchHHhhcCCC--CCEEEccCCCCCCCCCCC-----------------
Q 016534 209 NNVLSGVITKNSFDGLTQ-LEVIELSENSFTGTLEAWFFLLPA--LQQVNLSNNTLTRVGISK----------------- 268 (388)
Q Consensus 209 ~n~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~----------------- 268 (388)
+|.+. .+ +..+..+++ |++|++++|.++ .+|..+...+. |+.|++++|++++ .+|.
T Consensus 604 ~N~l~-~l-p~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 604 YNQIE-EI-PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp SSCCS-CC-CTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT-TSSSCSSCTTTCCCCCEEEEE
T ss_pred CCccc-cc-hHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC-ccccchhhhccccCCCcCEEE
Confidence 88887 55 566777777 888888888877 56665555433 6777777776655 2221
Q ss_pred -----------CC-CCCCCCCEEEccCCcCCCCCcccccC-------CCCCCEEEccCCcccccCCcccc--CCCCCcEE
Q 016534 269 -----------PV-DGRSDLVAVDLGFNKIQGYLPVNFAD-------YPMLSSLSMRYNRLRGGIPLEFS--HKKSLKRL 327 (388)
Q Consensus 269 -----------~~-~~~~~L~~L~L~~n~l~~~~~~~l~~-------l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L 327 (388)
.+ ..+++|+.|++++|+++..++..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 11 13455566666666555322222221 126666666666666 5666655 66677777
Q ss_pred eCcCCcCccCCCccCcCCCCCcEEEcCC------CcCC-CCCCCCCCCCCCccccccccCCCCCCCC
Q 016534 328 FLDGNFLIGKAPIGFFTGDVPVAGSLGD------NCLQ-GCPVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 328 ~Ls~n~l~~~~p~~~~~~~~L~~l~l~~------n~l~-~~p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
+|++|.+++ +|..+..+++|+.|++++ |.+. .+|..+..+++|+.|++++|.+ +.||+
T Consensus 759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp ECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred EeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 777776665 566666667777777655 4443 4566667777777777777777 66665
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=284.70 Aligned_cols=294 Identities=19% Similarity=0.149 Sum_probs=201.3
Q ss_pred CCCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC-CCchhhcCCCCCCE
Q 016534 81 DSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS-SVPDSLTQLKNLDS 159 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~ 159 (388)
...++++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4578999999999999888889999999999999999998 56655 78999999999999987 57889999999999
Q ss_pred EEccCCcCCCCcCccccCCCCC--cEEEcccCcC--CCCCCCCC------------------------------------
Q 016534 160 LDLSYNSLSGSLPKNTFLMSSL--RRLDLSYNKL--TGSLPKLP------------------------------------ 199 (388)
Q Consensus 160 L~L~~n~l~~~~p~~l~~~~~L--~~L~l~~n~l--~~~~~~~~------------------------------------ 199 (388)
|++++|.+.+ ..+..+++| ++|++++|.+ .+..|...
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred EEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 9999998874 234445555 7777777666 32222110
Q ss_pred --------------------------------------------------CCCCEEEccCCccCcccCcccc--------
Q 016534 200 --------------------------------------------------PNLSELALKNNVLSGVITKNSF-------- 221 (388)
Q Consensus 200 --------------------------------------------------~~L~~L~l~~n~~~~~~~~~~l-------- 221 (388)
++|++|++++|.+.|.+ +..+
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~~~l 275 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL-DFRDFDYSGTSL 275 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC-CCCCCCCCSCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc-ccchhhcccccC
Confidence 15666666666666544 3333
Q ss_pred ---------------------------------------------CCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEc
Q 016534 222 ---------------------------------------------DGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNL 256 (388)
Q Consensus 222 ---------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 256 (388)
..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 276 ~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp CEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred ceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 44555666666666666555556666666666666
Q ss_pred cCCCCCCC-CCCCCCCCCCCCCEEEccCCcCCCCCcc-cccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcC
Q 016534 257 SNNTLTRV-GISKPVDGRSDLVAVDLGFNKIQGYLPV-NFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFL 334 (388)
Q Consensus 257 ~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 334 (388)
++|+++++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|++
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence 66666542 1233345566666666666666653333 355566666666666666655555443 5677777777776
Q ss_pred ccCCCccCcCCCCCcEEEcCCCcCCCCCCC-CCCCCCCccccccccCCCCC
Q 016534 335 IGKAPIGFFTGDVPVAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAYGR 384 (388)
Q Consensus 335 ~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~ 384 (388)
+ .+|..++.+++|+.|++++|+++.+|.. +..+++|+.+++++|++.+.
T Consensus 434 ~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred c-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 6 5666666777777777777777777765 66777777777777777654
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=284.63 Aligned_cols=143 Identities=18% Similarity=0.163 Sum_probs=116.3
Q ss_pred hhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc-ccCCccccCCCC
Q 016534 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR-GGIPLEFSHKKS 323 (388)
Q Consensus 245 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~ 323 (388)
+..+++|++|++++|.+.+......+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4444555555555555554322245667888899999999888888888888999999999999987 678888999999
Q ss_pred CcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCC-CCCCCCCCccccccccCCCCCCCC
Q 016534 324 LKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPV-SSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 324 L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~-~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
|+.|++++|++++..|..+..+++|+.|++++|.++++|+ .+..+++|+.+++++|.+.+.+|.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999998889899999999999999999987764 478899999999999999998874
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=275.54 Aligned_cols=294 Identities=20% Similarity=0.108 Sum_probs=258.8
Q ss_pred EEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCc
Q 016534 87 QLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNS 166 (388)
Q Consensus 87 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 166 (388)
.++.++++++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4556666665 455544 3689999999999998888999999999999999999998889999999999999999999
Q ss_pred CCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchH
Q 016534 167 LSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA 243 (388)
Q Consensus 167 l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 243 (388)
+++..+..+..+++|++|++++|.+.+..+.. .++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCcCcccChh
Confidence 99555556789999999999999998765543 379999999999998765 77899999999999999999988888
Q ss_pred HhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCC
Q 016534 244 WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKS 323 (388)
Q Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 323 (388)
.+..+++|+.|++++|.+.++ .+..+..+++|++|++++|.+.+.++.......+|++|++++|++++..+..+..+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred HhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 899999999999999999985 3667888999999999999988877777667779999999999999555567899999
Q ss_pred CcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCC-CCCCCCCCCCccccccccCCCCCC
Q 016534 324 LKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGC-PVSSQLCSPSQKSYSVCKQAYGRR 385 (388)
Q Consensus 324 L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~-p~~~~~~~~L~~l~l~~n~~~~~i 385 (388)
|+.|+|++|.+++..+..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.+++..
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC
Confidence 99999999999988888899999999999999999965 677899999999999999988644
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-34 Score=284.09 Aligned_cols=270 Identities=20% Similarity=0.232 Sum_probs=222.2
Q ss_pred CCCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC-CCchhhcCCCCCCE
Q 016534 81 DSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS-SVPDSLTQLKNLDS 159 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~ 159 (388)
..+++++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 4578999999999999888888999999999999999988 56655 78899999999999886 34678889999999
Q ss_pred EEccCCcCCCC-------------------------cCccccCC------------------------------------
Q 016534 160 LDLSYNSLSGS-------------------------LPKNTFLM------------------------------------ 178 (388)
Q Consensus 160 L~L~~n~l~~~-------------------------~p~~l~~~------------------------------------ 178 (388)
|++++|.+++. .|..+..+
T Consensus 151 L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp EEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred EecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 99888877532 12222211
Q ss_pred ---------------------------------------------CCCcEEEcccCcCCCCCCC----------------
Q 016534 179 ---------------------------------------------SSLRRLDLSYNKLTGSLPK---------------- 197 (388)
Q Consensus 179 ---------------------------------------------~~L~~L~l~~n~l~~~~~~---------------- 197 (388)
++|++|++++|.+.|.+|.
T Consensus 231 n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp CSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 1566666666666654442
Q ss_pred ----------------------------------------CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC
Q 016534 198 ----------------------------------------LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237 (388)
Q Consensus 198 ----------------------------------------~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 237 (388)
..++|++|++++|.+.+.+ +..++++++|++|++++|.+
T Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp EEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSCC
T ss_pred hcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCCc
Confidence 2368999999999999866 77899999999999999999
Q ss_pred CC--cchHHhhcCCCCCEEEccCCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccC
Q 016534 238 TG--TLEAWFFLLPALQQVNLSNNTLTRVGISK-PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGI 314 (388)
Q Consensus 238 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 314 (388)
++ .+|..+..+++|++|++++|++++ .+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNS-HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBS-CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCC-ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 96 446778999999999999999987 2343 577799999999999999987776654 79999999999999 78
Q ss_pred CccccCCCCCcEEeCcCCcCccCCCcc-CcCCCCCcEEEcCCCcCC
Q 016534 315 PLEFSHKKSLKRLFLDGNFLIGKAPIG-FFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 315 p~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~l~l~~n~l~ 359 (388)
|..+..+++|++|++++|+++ .+|.. +..++.|+.+++++|++.
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 888889999999999999998 46665 889999999999999987
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-34 Score=269.08 Aligned_cols=283 Identities=16% Similarity=0.180 Sum_probs=203.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCccceeeCC--------CCCceEEEEeCCCC
Q 016534 26 LTSPQDISALKAFKASIKPSSIQPWSCLASWD---FTATDPCALPRRTHFTCGLLCSS--------DSTRVTQLTLDPAG 94 (388)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~---~~~~~~C~~~~~~~~~~g~~c~~--------~~~~l~~L~l~~~~ 94 (388)
+...+|++||++||..+. .++..+...|. ....++|.| .|+.|.. ...+|++|++++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~---~~~~~~~~~w~~~~~~~~~~~~~-------~g~~~~~~~~~l~~~~~~~l~~L~L~~n~ 92 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYN---ADRNRWHSAWRQANSNNPQIETR-------TGRALKATADLLEDATQPGRVALELRSVP 92 (328)
T ss_dssp CCCCCHHHHHHHHHHHHH---HCCTTHHHHHHHHTTTCTTSCCS-------HHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred ccCchHHHHHHHHHHhcc---CCchhhhhhhccccccccccccc-------CCcchhhhHHHHhcccccceeEEEccCCC
Confidence 455678999999999762 23444567783 223788988 7888852 24567777777777
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCcc
Q 016534 95 YSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKN 174 (388)
Q Consensus 95 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 174 (388)
+. .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..
T Consensus 93 l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 93 LP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp CS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred ch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 66 56666666777777777777666 56666666666666666666666 55666666666666666666555555543
Q ss_pred ccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEE
Q 016534 175 TFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQV 254 (388)
Q Consensus 175 l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 254 (388)
+.. . .+ ...+.++++|++|++++|.++ .+|..+..+++|++|
T Consensus 170 ~~~---------------------------~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 170 LAS---------------------------T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp SEE---------------------------E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred Hhh---------------------------c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 321 0 00 223556778888888888877 667778888888888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcC
Q 016534 255 NLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFL 334 (388)
Q Consensus 255 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 334 (388)
++++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|++
T Consensus 212 ~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 212 KIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 888888876 455677788888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCCCccCcCCCCCcEEEcCCCcCCCC
Q 016534 335 IGKAPIGFFTGDVPVAGSLGDNCLQGC 361 (388)
Q Consensus 335 ~~~~p~~~~~~~~L~~l~l~~n~l~~~ 361 (388)
.+.+|..+..++.++.+++..+.+..+
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred hhhccHHHhhccCceEEeCCHHHHHHH
Confidence 888888888888888888887766544
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=296.21 Aligned_cols=300 Identities=21% Similarity=0.179 Sum_probs=202.3
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccC-cccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPI-PASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (388)
.+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 467888888888888877888888888888888888655555 6778888888888888888887778888888888888
Q ss_pred EccCCcCCCCcCcc--ccCCCCCcEEEcccCcCCCCCCC----CCCCCCEEEccCCccCcccCccccCCC--CccCEEEc
Q 016534 161 DLSYNSLSGSLPKN--TFLMSSLRRLDLSYNKLTGSLPK----LPPNLSELALKNNVLSGVITKNSFDGL--TQLEVIEL 232 (388)
Q Consensus 161 ~L~~n~l~~~~p~~--l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~l~~l--~~L~~L~l 232 (388)
++++|.+++.+|.. +..+++|++|++++|.+.+..+. ..++|++|++++|.+.+.. +..+..+ ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEEC
Confidence 88888888766654 77888888888888888765432 2377888888888877654 4455544 56666666
Q ss_pred cCCcCCCcchHHhhcCCC------CCEEEccCCCCCCCCCCCC------------------------------------C
Q 016534 233 SENSFTGTLEAWFFLLPA------LQQVNLSNNTLTRVGISKP------------------------------------V 270 (388)
Q Consensus 233 ~~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~------------------------------------~ 270 (388)
++|.+.+..+..+..+++ |++|++++|.+++. ++.. +
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD-ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT-TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchh-HHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 666666555544444333 66666666654431 1111 1
Q ss_pred CC--CCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCC
Q 016534 271 DG--RSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVP 348 (388)
Q Consensus 271 ~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 348 (388)
.+ .++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 11 2456666666666666556666666666666666666666666666666666666666666666556666666666
Q ss_pred cEEEcCCCcCCCCCC-CCCCCCCCccccccccCCCC
Q 016534 349 VAGSLGDNCLQGCPV-SSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 349 ~~l~l~~n~l~~~p~-~~~~~~~L~~l~l~~n~~~~ 383 (388)
+.|++++|.++.+++ .+..+++|+.|++++|.+.+
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 666666666665443 35556666666666665543
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.9e-34 Score=284.38 Aligned_cols=286 Identities=20% Similarity=0.137 Sum_probs=194.8
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45566777777666544445667777777777777777666667777777777777777777666666777777777777
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccC-----------
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLE----------- 228 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~----------- 228 (388)
++|.+++..+..+..+++|++|++++|.+.+..|.. .++|++|++++|.+.+. .++.+++|+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCSSCCSE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----ChhhhhhhhhhhcccCcccc
Confidence 777777333334567777777777777776655532 26677777777776643 133344444
Q ss_pred --------EEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 016534 229 --------VIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPML 300 (388)
Q Consensus 229 --------~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 300 (388)
.|++++|.++... ..+ .++|+.|++++|.+++ +..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccCCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 4555555444222 111 2467777777777776 2356667788888888888887777777788888
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccC
Q 016534 301 SSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 301 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~ 380 (388)
+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..++.|+.|++++|.++.+| +..+++|+.|++++|.
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 888888888874 4556666778888888888776 46666777788888888888877665 5677778888888877
Q ss_pred CC
Q 016534 381 AY 382 (388)
Q Consensus 381 ~~ 382 (388)
+.
T Consensus 357 ~~ 358 (597)
T 3oja_B 357 WD 358 (597)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=268.36 Aligned_cols=285 Identities=22% Similarity=0.181 Sum_probs=198.7
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 56777777777766544444677777888888877777666667777777888888877777766677777777888888
Q ss_pred cCCcCCCCcCcc-ccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCcc-----------
Q 016534 163 SYNSLSGSLPKN-TFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQL----------- 227 (388)
Q Consensus 163 ~~n~l~~~~p~~-l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L----------- 227 (388)
++|.++ .+|.. +..+++|++|++++|.+.+..+.. .++|++|++++|.+.+. .+..+++|
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSCCS
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeeccccccc
Confidence 877777 44443 467777888888777776554432 26777777777777643 23334444
Q ss_pred --------CEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 016534 228 --------EVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPM 299 (388)
Q Consensus 228 --------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 299 (388)
++|++++|.++.. +. ...++|++|++++|++++. ..+..+++|++|++++|.+++..|..+..+++
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 4555555554422 22 1235677777777777763 34666778888888888888777777777888
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCcccccccc
Q 016534 300 LSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCK 379 (388)
Q Consensus 300 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n 379 (388)
|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..++.|+.|++++|.++.+| +..+++|+.|++++|
T Consensus 274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 8888888888774 4555667778888888888776 45666677788888888888877765 567778888888887
Q ss_pred CCC
Q 016534 380 QAY 382 (388)
Q Consensus 380 ~~~ 382 (388)
++.
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 664
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-34 Score=267.67 Aligned_cols=251 Identities=25% Similarity=0.311 Sum_probs=228.2
Q ss_pred CCCCEEEccCCcCCc--cCcccccCCCCCCEEeeec-CcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcE
Q 016534 107 TQLTILDLSDNYFFG--PIPASISSLSNLQMLTLRS-NSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRR 183 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 183 (388)
.++++|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8999999999999999995 9999999999999999999999999999899999999999999
Q ss_pred EEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCC-CCCEEEccCCCCC
Q 016534 184 LDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLP-ALQQVNLSNNTLT 262 (388)
Q Consensus 184 L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 262 (388)
|++++|.+.+.+ +..+..+++|++|++++|.+++.+|..+..++ +|++|++++|+++
T Consensus 130 L~Ls~N~l~~~~----------------------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTL----------------------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCC----------------------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCCccCCcC----------------------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 999888776432 55678899999999999999999999999998 9999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccC
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGF 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 342 (388)
+ .+|..+..++ |++|++++|.+++.+|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+
T Consensus 188 ~-~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 188 G-KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp E-ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred c-cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 7 4677777777 99999999999999999999999999999999999987776 7889999999999999999999999
Q ss_pred cCCCCCcEEEcCCCcCC-CCCCCCCCCCCCccccccccC-CCC
Q 016534 343 FTGDVPVAGSLGDNCLQ-GCPVSSQLCSPSQKSYSVCKQ-AYG 383 (388)
Q Consensus 343 ~~~~~L~~l~l~~n~l~-~~p~~~~~~~~L~~l~l~~n~-~~~ 383 (388)
..+++|+.|++++|+++ .+|.. +.+++|+.+++++|+ +.|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 99999999999999998 46664 889999999999998 444
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=279.48 Aligned_cols=302 Identities=22% Similarity=0.160 Sum_probs=230.2
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
.+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++++++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 46677888888877766666777888888888888887777777788888888888888887755544678888888888
Q ss_pred ccCCcCCC-CcCccccCCCCCcEEEcccCcCCCCCCCC------------------------------------------
Q 016534 162 LSYNSLSG-SLPKNTFLMSSLRRLDLSYNKLTGSLPKL------------------------------------------ 198 (388)
Q Consensus 162 L~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~~------------------------------------------ 198 (388)
+++|.+.+ .+|..+..+++|++|++++|.+++..+..
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 88888875 46888888888888888888665322100
Q ss_pred ----------------------------------------------------------------------CCCCCEEEcc
Q 016534 199 ----------------------------------------------------------------------PPNLSELALK 208 (388)
Q Consensus 199 ----------------------------------------------------------------------~~~L~~L~l~ 208 (388)
.++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 0223333333
Q ss_pred CCccCcccCcccc------------------------------------------CCCCccCEEEccCCcCCCcc--hHH
Q 016534 209 NNVLSGVITKNSF------------------------------------------DGLTQLEVIELSENSFTGTL--EAW 244 (388)
Q Consensus 209 ~n~~~~~~~~~~l------------------------------------------~~l~~L~~L~l~~n~l~~~~--~~~ 244 (388)
+|.+.+ + +..+ ..+++|++|++++|.+++.. +..
T Consensus 291 ~~~l~~-l-~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 291 SVTIER-V-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp SCEECS-C-CBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred Cccchh-h-hhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 333321 1 1111 34456666666666666433 567
Q ss_pred hhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc-ccccCCCCCCEEEccCCcccccCCccccCCCC
Q 016534 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLP-VNFADYPMLSSLSMRYNRLRGGIPLEFSHKKS 323 (388)
Q Consensus 245 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 323 (388)
+..+++|++|++++|.++++ +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccCccCEEECCCCccccc--cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 77788888888888887763 3337788999999999999988765 56788999999999999999999999999999
Q ss_pred CcEEeCcCCcCc-cCCCccCcCCCCCcEEEcCCCcCCCC-CCCCCCCCCCccccccccCCCCCCCC
Q 016534 324 LKRLFLDGNFLI-GKAPIGFFTGDVPVAGSLGDNCLQGC-PVSSQLCSPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 324 L~~L~Ls~n~l~-~~~p~~~~~~~~L~~l~l~~n~l~~~-p~~~~~~~~L~~l~l~~n~~~~~ip~ 387 (388)
|++|++++|.++ +.+|..+..+++|+.|++++|.++++ |..+..+++|+.|++++|++++..|+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 999999999998 57899999999999999999999976 77899999999999999999887664
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-33 Score=266.41 Aligned_cols=273 Identities=20% Similarity=0.245 Sum_probs=227.9
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
.++++++|+++++.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 56899999999999986555667899999999999999998777899999999999999999997778889999999999
Q ss_pred EcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCC
Q 016534 185 DLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTL 261 (388)
Q Consensus 185 ~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 261 (388)
++++|.+....+.. .++|++|++++|.+.+.. +..+..+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 99999998544433 489999999999998755 677999999999999999998653 34455666666666655
Q ss_pred CCCCCCCCC---------------CCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcE
Q 016534 262 TRVGISKPV---------------DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKR 326 (388)
Q Consensus 262 ~~~~~~~~~---------------~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 326 (388)
+++..+..+ ...++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 543222211 1246788999999998864 56788899999999999999888999999999999
Q ss_pred EeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCCC
Q 016534 327 LFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYGR 384 (388)
Q Consensus 327 L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~~ 384 (388)
|++++|++++ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+.
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence 9999999876 46666788999999999999999988888899999999999998653
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-32 Score=279.90 Aligned_cols=303 Identities=22% Similarity=0.139 Sum_probs=196.7
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC-----CCch----hhcCC
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS-----SVPD----SLTQL 154 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~p~----~l~~l 154 (388)
++++|++++|.+.+..+..++.+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|. .|..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 37777777777776666667777777777777777776666667777777777776654432 2222 56667
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCC----------------------------CCCCC---CCCCC
Q 016534 155 KNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTG----------------------------SLPKL---PPNLS 203 (388)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~----------------------------~~~~~---~~~L~ 203 (388)
++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..|.. .++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 777777777777776666667777777777776665331 11111 13444
Q ss_pred EEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCC-CCCCCCCCCCCCCEEEcc
Q 016534 204 ELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRV-GISKPVDGRSDLVAVDLG 282 (388)
Q Consensus 204 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~ 282 (388)
+|++++|.+.+.+++..+.++++|++|++++|.+++..+..+..+++|++|++++|.+... .+|..+..+++|++|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 4444444444433333444444555555555544444444444555555555555554421 245667777888888888
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcccccCC--------ccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcC
Q 016534 283 FNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIP--------LEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLG 354 (388)
Q Consensus 283 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~ 354 (388)
+|++++..+..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.++...+..+..+++|+.++++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 888887777777888888888888888775321 236777888888888888874333457778888888888
Q ss_pred CCcCCCCCCC-CCCCCCCccccccccCCCCCCC
Q 016534 355 DNCLQGCPVS-SQLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 355 ~n~l~~~p~~-~~~~~~L~~l~l~~n~~~~~ip 386 (388)
+|.++.+|+. +..+++|+.|++++|++++..|
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 8888877765 4678888888888888776544
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-33 Score=280.98 Aligned_cols=296 Identities=22% Similarity=0.202 Sum_probs=206.4
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888899888888777777888888888898888888888888888888888888888888655557888888888888
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCcccc--CCCCccCEEEccCCcC
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSF--DGLTQLEVIELSENSF 237 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l--~~l~~L~~L~l~~n~l 237 (388)
++|.+++..|..+..+++|++|++++|.+++..+.. .++|++|++++|.+.+.. +..+ ..+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCCcc
Confidence 888888666677888888888888888887765543 367888888888877654 3333 2457788888888877
Q ss_pred CCcchHHhhcC---------------------------CCCCEEEccCCCCCCCCCCCCCCCCC--CCCEEEccCCcCCC
Q 016534 238 TGTLEAWFFLL---------------------------PALQQVNLSNNTLTRVGISKPVDGRS--DLVAVDLGFNKIQG 288 (388)
Q Consensus 238 ~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~--~L~~L~L~~n~l~~ 288 (388)
++..+..+..+ ++|++|++++|.+++. .+..+..++ +|++|++++|.+++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~-~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-SNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE-CTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc-ChhHhhccCcCCCCEEECCCCCcCc
Confidence 76666555433 4556666666666653 344555543 37777777777777
Q ss_pred CCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCcc-----CCCc----cCcCCCCCcEEEcCCCcCC
Q 016534 289 YLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG-----KAPI----GFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 289 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----~~p~----~~~~~~~L~~l~l~~n~l~ 359 (388)
..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|...+ .+|. .+..+++|+.+++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 666667777777777777777776666666666666666666554332 1222 4445566666666666655
Q ss_pred CCC-CCCCCCCCCccccccccC
Q 016534 360 GCP-VSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 360 ~~p-~~~~~~~~L~~l~l~~n~ 380 (388)
+++ ..+..+++|+.|++++|.
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCB
T ss_pred CCChhHhccccCCcEEECCCCc
Confidence 433 335555555555555443
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=286.92 Aligned_cols=296 Identities=21% Similarity=0.198 Sum_probs=246.4
Q ss_pred CCCceEEEEeCCCCCCCCC-cccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchh--hcCCCCC
Q 016534 81 DSTRVTQLTLDPAGYSGQL-TPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDS--LTQLKNL 157 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L 157 (388)
...++++|++++|...+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++.+|.. |.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4578999999999877777 678999999999999999999888999999999999999999999877665 8899999
Q ss_pred CEEEccCCcCCCCcC-ccccCCCCCcEEEcccCcCCCCCCCCC-----CCCCEEEccCCccCcccCccccCCCCc-----
Q 016534 158 DSLDLSYNSLSGSLP-KNTFLMSSLRRLDLSYNKLTGSLPKLP-----PNLSELALKNNVLSGVITKNSFDGLTQ----- 226 (388)
Q Consensus 158 ~~L~L~~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~l~~l~~----- 226 (388)
++|++++|.+++..+ ..+.++++|++|++++|.+++..+... ++|+.|++++|.+.+.. +..++.+++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRNM 204 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTTC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCccccC
Confidence 999999999986654 578999999999999999987665432 68889999999888766 555555554
Q ss_pred -cCEEEccCCcCCCcchHHhhc--------------------------------------CCCCCEEEccCCCCCCCCCC
Q 016534 227 -LEVIELSENSFTGTLEAWFFL--------------------------------------LPALQQVNLSNNTLTRVGIS 267 (388)
Q Consensus 227 -L~~L~l~~n~l~~~~~~~~~~--------------------------------------l~~L~~L~L~~n~l~~~~~~ 267 (388)
|++|++++|.+++..+..+.. .++|+.|++++|.+.++ .+
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NS 283 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-CS
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc-Ch
Confidence 889999988776555443332 25789999999988874 46
Q ss_pred CCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCC
Q 016534 268 KPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDV 347 (388)
Q Consensus 268 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 347 (388)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 77888899999999999999888888888999999999999998888888999999999999999988777778888899
Q ss_pred CcEEEcCCCcCCCCCCCCCCCCCCccccccccCCC
Q 016534 348 PVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAY 382 (388)
Q Consensus 348 L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~ 382 (388)
|+.|++++|.++.++. +++|+.+++++|++.
T Consensus 364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV 394 (844)
T ss_dssp CCEEEEETCCSCCCSS----CCSCSEEEEESCCCC
T ss_pred CCEEECCCCCCCcccC----CCCcchhccCCCCcc
Confidence 9999999998887654 666777777777765
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-33 Score=279.37 Aligned_cols=112 Identities=22% Similarity=0.254 Sum_probs=67.4
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC-CCchhhcCCCCCCEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS-SVPDSLTQLKNLDSL 160 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L 160 (388)
..++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 3556666666666666555666666666666666666666555556666666666666666654 234556666666666
Q ss_pred EccCCcCCCCcC-ccccCCCCCcEEEcccCcCCC
Q 016534 161 DLSYNSLSGSLP-KNTFLMSSLRRLDLSYNKLTG 193 (388)
Q Consensus 161 ~L~~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~~ 193 (388)
++++|.+.+.+| ..+..+++|++|++++|.+.+
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 666665333443 345555555555555555543
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-31 Score=251.11 Aligned_cols=281 Identities=21% Similarity=0.218 Sum_probs=235.8
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
.+++++|+++++.+.+. +. +..+++|++|++++|.+++ + +.+.++++|++|++++|.+.+. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 46789999999988754 33 8899999999999998875 3 3688999999999999998854 43 88899999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCC-CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCc
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLP-KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGT 240 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 240 (388)
+++|.....+ ..+..+++|++|++++|.+.+..+ ...++|++|++++|.+.+.. .+..+++|+.|++++|.+++.
T Consensus 139 l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 139 LGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc---cccCCCccceeecccCCCCCC
Confidence 9999766444 448889999999999998875432 22378999999999988643 278889999999999999865
Q ss_pred chHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccC
Q 016534 241 LEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSH 320 (388)
Q Consensus 241 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 320 (388)
.+ +..+++|++|++++|++++.+ . +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~ 285 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLS--P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN 285 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred ch--hhcCCcCCEEEccCCccCCCc--c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC
Confidence 54 888999999999999999743 3 77899999999999999874 4678899999999999999954 35888
Q ss_pred CCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCC
Q 016534 321 KKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAY 382 (388)
Q Consensus 321 l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~ 382 (388)
+++|+.|++++|++++..|..+..+++|+.|++++|+++++++ +..+++|+.+++++|.++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 9999999999999999888889999999999999999998777 899999999999999875
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.6e-32 Score=250.07 Aligned_cols=286 Identities=22% Similarity=0.295 Sum_probs=231.6
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
+++.++++++++. .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567788887776 4555443 689999999999988777789999999999999999998888899999999999999
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCC---CCCCCCCEEEccCCccCc-ccCccccCCCCccCEEEccCCcCCC
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLP---KLPPNLSELALKNNVLSG-VITKNSFDGLTQLEVIELSENSFTG 239 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~ 239 (388)
+|.++ .+|..+. ++|++|++++|.+.+..+ ...++|++|++++|.+.. .+.+..+.++++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 6776654 789999999998885544 234789999999998863 1336678889999999999999884
Q ss_pred cchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcccc
Q 016534 240 TLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319 (388)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 319 (388)
+|..+. ++|++|++++|+++++ .+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 444433 7899999999999874 3667888999999999999999888878889999999999999999 8888899
Q ss_pred CCCCCcEEeCcCCcCccCCCccCcC------CCCCcEEEcCCCcCC--CC-CCCCCCCCCCccccccccC
Q 016534 320 HKKSLKRLFLDGNFLIGKAPIGFFT------GDVPVAGSLGDNCLQ--GC-PVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 320 ~l~~L~~L~Ls~n~l~~~~p~~~~~------~~~L~~l~l~~n~l~--~~-p~~~~~~~~L~~l~l~~n~ 380 (388)
.+++|++|++++|++++..+..+.. .+.++.+++++|.+. .+ |..+..+++++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999998776666543 377889999999886 23 4557778889999998885
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-32 Score=272.57 Aligned_cols=273 Identities=20% Similarity=0.247 Sum_probs=231.5
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
.+++++.+++++|.+....+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46889999999999987666678899999999999999998888899999999999999999998778888999999999
Q ss_pred EcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCC
Q 016534 185 DLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTL 261 (388)
Q Consensus 185 ~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 261 (388)
++++|.+++..+.. .++|++|++++|.+.+.. +..++.+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 99999998655543 489999999999999765 778999999999999999998653 34456666666666665
Q ss_pred CCCCCCCCC---------------CCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcE
Q 016534 262 TRVGISKPV---------------DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKR 326 (388)
Q Consensus 262 ~~~~~~~~~---------------~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 326 (388)
+++..+..+ ...++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 543322211 113578899999999887 367788999999999999999999999999999999
Q ss_pred EeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCCC
Q 016534 327 LFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYGR 384 (388)
Q Consensus 327 L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~~ 384 (388)
|+|++|.+++ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+.
T Consensus 283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp EECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred EECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 9999999987 56677788999999999999999998889999999999999998764
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.8e-32 Score=250.97 Aligned_cols=285 Identities=22% Similarity=0.244 Sum_probs=239.2
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
+++.++++++++. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4577888888876 566655 3789999999999998888889999999999999999998889999999999999999
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCCC---CCCCCCEEEccCCccCc-ccCccccCCCCccCEEEccCCcCCC
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPK---LPPNLSELALKNNVLSG-VITKNSFDGLTQLEVIELSENSFTG 239 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~ 239 (388)
+|.++ .+|..+. ++|++|++++|.+.+..+. ..++|++|++++|.+.. .+.+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 7777665 8999999999999855443 24889999999999863 2336677777 99999999999985
Q ss_pred cchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcccc
Q 016534 240 TLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319 (388)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 319 (388)
+|..+. ++|++|++++|+++++ .+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -cCcccc--CCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 554443 7899999999999984 3567888999999999999999988888999999999999999999 8888899
Q ss_pred CCCCCcEEeCcCCcCccCCCccCcCC------CCCcEEEcCCCcCC--CC-CCCCCCCCCCccccccccC
Q 016534 320 HKKSLKRLFLDGNFLIGKAPIGFFTG------DVPVAGSLGDNCLQ--GC-PVSSQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 320 ~l~~L~~L~Ls~n~l~~~~p~~~~~~------~~L~~l~l~~n~l~--~~-p~~~~~~~~L~~l~l~~n~ 380 (388)
.+++|+.|++++|++++..+..+... +.++.+++++|.+. .+ |..+..+++|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999999999998776666543 67899999999987 44 4557889999999999875
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.4e-31 Score=244.21 Aligned_cols=266 Identities=23% Similarity=0.285 Sum_probs=234.7
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcc
Q 016534 108 QLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLS 187 (388)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~ 187 (388)
+++.++++++.++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6899999999887 4665554 689999999999998777789999999999999999997779999999999999999
Q ss_pred cCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCC--cchHHhhcCCCCCEEEccCCCCCCCC
Q 016534 188 YNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTG--TLEAWFFLLPALQQVNLSNNTLTRVG 265 (388)
Q Consensus 188 ~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~ 265 (388)
+|.++.......++|++|++++|.+.+.. +..+.++++|++|++++|.++. ..+..+..+++|++|++++|+++.
T Consensus 109 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 185 (330)
T 1xku_A 109 KNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-- 185 (330)
T ss_dssp SSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--
T ss_pred CCcCCccChhhcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--
Confidence 99998544455689999999999998654 6678999999999999999964 667889999999999999999997
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCC
Q 016534 266 ISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345 (388)
Q Consensus 266 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 345 (388)
+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 186 l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 45443 389999999999999988899999999999999999999888888999999999999999997 788899999
Q ss_pred CCCcEEEcCCCcCCCCCCC-CC------CCCCCccccccccCCC
Q 016534 346 DVPVAGSLGDNCLQGCPVS-SQ------LCSPSQKSYSVCKQAY 382 (388)
Q Consensus 346 ~~L~~l~l~~n~l~~~p~~-~~------~~~~L~~l~l~~n~~~ 382 (388)
+.|+.|++++|+++++|.. +. ....++.+++++|++.
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9999999999999987654 32 2467889999999875
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-30 Score=251.93 Aligned_cols=274 Identities=18% Similarity=0.119 Sum_probs=157.6
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
+++++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|++++|.+++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 4556666666665542 2 55566666666666666543 2 5556666666666666654 22 556666666666
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCC-CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcc
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLP-KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTL 241 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 241 (388)
++|.+++ ++ +..+++|++|++++|...+.++ ...++|++|++++|++.+ + + ++.+++|++|++++|.+++.
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l-~--l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L-D--VSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C-C--CTTCTTCCEEECCSSCCSCC-
T ss_pred CCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-e-c--cccCCCCCEEECcCCcCCee-
Confidence 6666654 22 5556666666666664433332 122567777777776665 2 2 56667777777777777654
Q ss_pred hHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCC-------CCCEEEccCCcccccC
Q 016534 242 EAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYP-------MLSSLSMRYNRLRGGI 314 (388)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~ 314 (388)
.+..+++|++|++++|+++++ | +..+++|++|++++|++++..+..+..+. +|+.|++++|.+.+.+
T Consensus 207 --~l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred --ccccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 266667777777777777763 3 55677777777777777765443333322 3344444444444444
Q ss_pred CccccCCCCCcEEeCcCCcCccCCCc--------cCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCC
Q 016534 315 PLEFSHKKSLKRLFLDGNFLIGKAPI--------GFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 315 p~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~ 383 (388)
| +..+++|+.|++++|...+.+|. .+..+++|+.|++++|++++++ ++.|++|+.|++++|++.+
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC
Confidence 3 23445555666666655444432 1334456666666666666653 5666666666666666554
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.2e-31 Score=256.30 Aligned_cols=281 Identities=24% Similarity=0.293 Sum_probs=147.3
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
..++++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++. +. +..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 3567777777777765433 6777777777777777765433 66777777777777776643 22 66666666666
Q ss_pred ccCCcCCCCcCc--------------------cccCCCCCcEEEcccCcCCCCCCCC--CCCCCEEEccCCccCcccCcc
Q 016534 162 LSYNSLSGSLPK--------------------NTFLMSSLRRLDLSYNKLTGSLPKL--PPNLSELALKNNVLSGVITKN 219 (388)
Q Consensus 162 L~~n~l~~~~p~--------------------~l~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~ 219 (388)
+++|.+.+ ++. .+..+++|++|++++|.+.+. +.+ .++|++|++++|.+.+.. +
T Consensus 141 l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~-~- 216 (466)
T 1o6v_A 141 LSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT-P- 216 (466)
T ss_dssp EEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-G-
T ss_pred CCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc-c-
Confidence 66666552 221 134455555555555554421 111 145555555555544432 1
Q ss_pred ccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCC--------------------CCCCCCCCCCCCEE
Q 016534 220 SFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVG--------------------ISKPVDGRSDLVAV 279 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------------~~~~~~~~~~L~~L 279 (388)
++.+++|++|++++|.+++. ..+..+++|++|++++|.+++.. ++. +..+++|++|
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNL 292 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeE
Confidence 33344444444444444422 12344444444444444444321 111 3344455555
Q ss_pred EccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 280 DLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 280 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 555555544322 3445555555555555554433 34555555555555555443 34455555555555555555
Q ss_pred CCCCCCCCCCCCccccccccCCCC
Q 016534 360 GCPVSSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 360 ~~p~~~~~~~~L~~l~l~~n~~~~ 383 (388)
+.++ +..+++|+.|++++|++++
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ccch-hhcCCCCCEEeccCCcccC
Confidence 4443 5555556666666555554
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-31 Score=266.32 Aligned_cols=111 Identities=20% Similarity=0.147 Sum_probs=93.9
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
..+++|+|++|.+++..+..|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57899999999998777778999999999999999998877888999999999999999998766677888899999999
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCC
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTG 193 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 193 (388)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 9888885555567788888888888887653
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-31 Score=245.69 Aligned_cols=283 Identities=21% Similarity=0.216 Sum_probs=243.4
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
..++++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ + +.+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEE
Confidence 4679999999999874 33 488999999999999999864 43 8999999999999999985 4 4699999999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC--CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCC
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL--PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTG 239 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 239 (388)
+++|.+.+ ++. +..+++|++|++++|.....++.+ .++|++|++++|.+.+.. .+..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCCcccc
Confidence 99999984 444 889999999999999766555543 379999999999988653 38899999999999999985
Q ss_pred cchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcccc
Q 016534 240 TLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319 (388)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 319 (388)
..+ +..+++|+.|++++|.+++.. . +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+.
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~ 262 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDIT--P-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVK 262 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGT
T ss_pred ccc--ccCCCccceeecccCCCCCCc--h-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHh
Confidence 544 889999999999999999743 2 7789999999999999997654 8899999999999999995 3 4688
Q ss_pred CCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCC-CCCCCCCCCCccccccccCCCCCCC
Q 016534 320 HKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGC-PVSSQLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 320 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~-p~~~~~~~~L~~l~l~~n~~~~~ip 386 (388)
.+++|++|++++|.+++. ..+..+++|+.|++++|.+++. |..+..+++|+.|++++|++++..|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 999999999999999874 4678899999999999999854 5668899999999999999988765
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=7.4e-31 Score=255.20 Aligned_cols=264 Identities=25% Similarity=0.335 Sum_probs=194.5
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCc-------------
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVP------------- 148 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p------------- 148 (388)
..++++|+++++.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+.+...
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 4677888888887775444 7777778888887777765422 6666777777776666553210
Q ss_pred ------hhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCC---------------------CC--C
Q 016534 149 ------DSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLP---------------------KL--P 199 (388)
Q Consensus 149 ------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~---------------------~~--~ 199 (388)
..+.++++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ .+ .
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l 242 (466)
T 1o6v_A 165 NQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 242 (466)
T ss_dssp ESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC
Confidence 124455566666666666552 22 24455555555555555443221 11 2
Q ss_pred CCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEE
Q 016534 200 PNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAV 279 (388)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 279 (388)
++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++|++|++++|+++++. . +..+++|++|
T Consensus 243 ~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 314 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--P-ISNLKNLTYL 314 (466)
T ss_dssp TTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEE
T ss_pred CCCCEEECCCCccccch---hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--h-hcCCCCCCEE
Confidence 67777888877777653 27788889999999998886544 788999999999999998743 2 6789999999
Q ss_pred EccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 280 DLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 280 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
++++|++++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..++.|+.+++++|.++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 999999998765 67899999999999999965 478899999999999999998877 889999999999999988
Q ss_pred CCCCCC
Q 016534 360 GCPVSS 365 (388)
Q Consensus 360 ~~p~~~ 365 (388)
+.|..+
T Consensus 389 ~~p~~~ 394 (466)
T 1o6v_A 389 NAPVNY 394 (466)
T ss_dssp CCCBCC
T ss_pred CCchhh
Confidence 766544
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=5.8e-31 Score=244.68 Aligned_cols=265 Identities=26% Similarity=0.285 Sum_probs=233.0
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcc
Q 016534 108 QLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLS 187 (388)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~ 187 (388)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6899999999987 5676653 689999999999998778899999999999999999997778999999999999999
Q ss_pred cCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCC--CcchHHhhcCCCCCEEEccCCCCCCCC
Q 016534 188 YNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFT--GTLEAWFFLLPALQQVNLSNNTLTRVG 265 (388)
Q Consensus 188 ~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~ 265 (388)
+|.+....+...++|++|++++|.+.+.. +..+..+++|++|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-- 186 (332)
T ss_dssp SSCCCSCCSSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--
T ss_pred CCcCCccCccccccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--
Confidence 99998544455689999999999998653 667899999999999999996 3567777777 99999999999997
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCC
Q 016534 266 ISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345 (388)
Q Consensus 266 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 345 (388)
+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 187 l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 45444 379999999999999988889999999999999999999888888999999999999999998 788889999
Q ss_pred CCCcEEEcCCCcCCCCCCC-CCC------CCCCccccccccCCC
Q 016534 346 DVPVAGSLGDNCLQGCPVS-SQL------CSPSQKSYSVCKQAY 382 (388)
Q Consensus 346 ~~L~~l~l~~n~l~~~p~~-~~~------~~~L~~l~l~~n~~~ 382 (388)
+.|+.|++++|+++.+|.. +.. ...++.+++++|++.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999999999999987643 333 356899999999876
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.3e-30 Score=248.24 Aligned_cols=244 Identities=21% Similarity=0.158 Sum_probs=165.2
Q ss_pred EEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCc
Q 016534 87 QLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNS 166 (388)
Q Consensus 87 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 166 (388)
.++.++.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4455555554 3554443 688899999999988888888899999999999999888777888889999999999998
Q ss_pred CCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCc-CCCcchHHh
Q 016534 167 LSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENS-FTGTLEAWF 245 (388)
Q Consensus 167 l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~ 245 (388)
+++..+..+..+++|++|++++|.+.+ +++..+.++++|++|++++|. +....+..+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIES----------------------IPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCE----------------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CCccChhhhcccCCCCEEECCCCCcce----------------------eCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 885555567778888888888887762 213345556666666666533 332223345
Q ss_pred hcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCc
Q 016534 246 FLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLK 325 (388)
Q Consensus 246 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 325 (388)
..+++|++|++++|+++++ | .+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccccc--c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 5666666666666666652 2 345566666666666666666666666666666666666666666666666666666
Q ss_pred EEeCcCCcCccCCCccCcCCCCCcEEEcCCCcC
Q 016534 326 RLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCL 358 (388)
Q Consensus 326 ~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l 358 (388)
.|+|++|++++..+..+..+++|+.|++++|.+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666666666655555555666666666666654
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=249.68 Aligned_cols=263 Identities=21% Similarity=0.187 Sum_probs=178.0
Q ss_pred CCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCC
Q 016534 91 DPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGS 170 (388)
Q Consensus 91 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 170 (388)
++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++.
T Consensus 39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 344444 3444333 4777777777777765555677777777777777777766666777777777777777777743
Q ss_pred cCccccCCCCCcEEEcccCcCCCCCC----CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhh
Q 016534 171 LPKNTFLMSSLRRLDLSYNKLTGSLP----KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFF 246 (388)
Q Consensus 171 ~p~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 246 (388)
.+..+..+++|++|++++|++.+..+ ...++|++|++++|...+.+.+..++++++|++|++++|.+++..|..+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 33336777777777777777763222 11256666666666422233356677888888888888888877777888
Q ss_pred cCCCCCEEEccCCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCCccccc---CCCCCCEEEccCCcccc----cCCccc
Q 016534 247 LLPALQQVNLSNNTLTRVGISK-PVDGRSDLVAVDLGFNKIQGYLPVNFA---DYPMLSSLSMRYNRLRG----GIPLEF 318 (388)
Q Consensus 247 ~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~----~~p~~~ 318 (388)
.+++|++|++++|+++.+ +. .+..+++|++|++++|.+++..+..+. ....++.++++++.+.+ .+|..+
T Consensus 196 ~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILL--LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TCSEEEEEEEECSCSTTH--HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred ccccCCeecCCCCccccc--hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 888888888888887653 32 233467888888888888776554432 35667777777777765 456667
Q ss_pred cCCCCCcEEeCcCCcCccCCCcc-CcCCCCCcEEEcCCCcCC
Q 016534 319 SHKKSLKRLFLDGNFLIGKAPIG-FFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 319 ~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~l~l~~n~l~ 359 (388)
..+++|+.|++++|+++ .+|.. +..+++|+.+++++|++.
T Consensus 274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 77788888888888777 45555 367788888888888766
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.8e-30 Score=240.87 Aligned_cols=234 Identities=18% Similarity=0.198 Sum_probs=199.9
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
..+.++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578899999999987 67888888999999999999988 88888888999999999999888 788888888888888
Q ss_pred EcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCC
Q 016534 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRV 264 (388)
Q Consensus 185 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 264 (388)
++++|++.+.+| ..+.. .++ +..+..+++|++|++++|+++.
T Consensus 156 ~L~~n~~~~~~p----------------------~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~- 197 (328)
T 4fcg_A 156 SIRACPELTELP----------------------EPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRS- 197 (328)
T ss_dssp EEEEETTCCCCC----------------------SCSEE------EC----------CCCEEESTTCCEEEEEEECCCC-
T ss_pred ECCCCCCccccC----------------------hhHhh------ccc---------hhhhccCCCCCEEECcCCCcCc-
Confidence 888876654332 22211 111 1235678999999999999994
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcC
Q 016534 265 GISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFT 344 (388)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 344 (388)
+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 198 -lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 198 -LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp -CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred -chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 67888899999999999999997 5567899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEcCCCcCC-CCCCCCCCCCCCccccccccCC
Q 016534 345 GDVPVAGSLGDNCLQ-GCPVSSQLCSPSQKSYSVCKQA 381 (388)
Q Consensus 345 ~~~L~~l~l~~n~l~-~~p~~~~~~~~L~~l~l~~n~~ 381 (388)
+++|+.|++++|++. .+|..++++++++.+++..+.+
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999998765 7999999999999999887654
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.1e-30 Score=252.60 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=110.6
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCC-------------CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCch
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQL-------------TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPD 149 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L-------------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 149 (388)
.++++|+++++.+.|.+|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+++ +|.
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~ 108 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE 108 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc
Confidence 344445555555555555555554432 555555555543 1211 1345666666666554 332
Q ss_pred hhc----------------CC-CCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCcc
Q 016534 150 SLT----------------QL-KNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVL 212 (388)
Q Consensus 150 ~l~----------------~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~ 212 (388)
.+. .. ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..+.+|++|++++|.+
T Consensus 109 ~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 109 LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQL 185 (454)
T ss_dssp CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcC
Confidence 221 11 478888888888874 77 58888999999999998885 666677899999999988
Q ss_pred CcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 016534 213 SGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQ 287 (388)
Q Consensus 213 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 287 (388)
.+ + + .++++++|++|++++|.+++ +|.. .++|++|++++|+++. +|. +..+++|++|++++|+++
T Consensus 186 ~~-l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 186 EE-L-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SS-C-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS
T ss_pred Cc-C-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCC
Confidence 86 3 4 57778888888887777764 2221 1244444444444442 221 334444444444444443
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.7e-29 Score=241.93 Aligned_cols=273 Identities=25% Similarity=0.315 Sum_probs=186.9
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.++++|++++|.+.+ ++. ..++|++|++++|.+++ +| +|+++++|++|++++|.+++ +|..+ .+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEEC
Confidence 456666666666654 221 11688889999888886 66 58889999999999998885 55443 58999999
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
++|.+++ +| .+..+++|++|++++|.+++ +|..+++|++|++++|.+. .+ + .++.+++|++|++++|++++ +|
T Consensus 181 ~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~l-p-~~~~l~~L~~L~l~~N~l~~-l~ 253 (454)
T 1jl5_A 181 GNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-EL-P-ELQNLPFLTTIYADNNLLKT-LP 253 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SC-C-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred cCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cc-c-ccCCCCCCCEEECCCCcCCc-cc
Confidence 9999885 66 58889999999999999885 6777789999999999988 45 4 48899999999999999885 44
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC--Ccccc-------------cCC-CCCCEEEcc
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGY--LPVNF-------------ADY-PMLSSLSMR 306 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l-------------~~l-~~L~~L~L~ 306 (388)
. ..++|++|++++|+++++ |.. +++|++|++++|++++. .|..+ ..+ ++|++|+++
T Consensus 254 ~---~~~~L~~L~l~~N~l~~l--~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 254 D---LPPSLEALNVRDNYLTDL--PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325 (454)
T ss_dssp S---CCTTCCEEECCSSCCSCC--CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred c---cccccCEEECCCCccccc--Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECC
Confidence 3 246888899988888863 432 36777777777777662 22111 122 477888888
Q ss_pred CCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCC---CCCCCCCC-------------CC
Q 016534 307 YNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQG---CPVSSQLC-------------SP 370 (388)
Q Consensus 307 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~---~p~~~~~~-------------~~ 370 (388)
+|++++ +|.. +++|+.|++++|++++ +|. .+++|+.|++++|++++ +|..++.+ ++
T Consensus 326 ~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~ 397 (454)
T 1jl5_A 326 NNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN 397 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------
T ss_pred CCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCc
Confidence 887774 5543 4678888888888874 565 46788888888888875 56667666 77
Q ss_pred CccccccccCCCC--CCCCC
Q 016534 371 SQKSYSVCKQAYG--RRPRP 388 (388)
Q Consensus 371 L~~l~l~~n~~~~--~ip~~ 388 (388)
|+.|++++|.+.+ +||++
T Consensus 398 L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 398 LKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp --------------------
T ss_pred CCEEECCCCcCCccccchhh
Confidence 8888888888887 77753
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-30 Score=240.02 Aligned_cols=244 Identities=23% Similarity=0.266 Sum_probs=144.8
Q ss_pred EEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCC--CCchhhcCCCCCCEEEccC
Q 016534 87 QLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSS--SVPDSLTQLKNLDSLDLSY 164 (388)
Q Consensus 87 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~ 164 (388)
.++.++++++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444554 344433 3689999999999985555567899999999999999873 3367778899999999999
Q ss_pred CcCCCCcCccccCCCCCcEEEcccCcCCCCCC----CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCC-
Q 016534 165 NSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLP----KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTG- 239 (388)
Q Consensus 165 n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~- 239 (388)
|.+. .+|..+..+++|++|++++|.+.+..+ ...++|++|++++|.+.+.. +..+..+++|++|++++|.+++
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCEEGGG
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCccccc
Confidence 9988 677778889999999999888764322 11144444444444444333 3344445555555555555443
Q ss_pred cchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCcccc
Q 016534 240 TLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFS 319 (388)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 319 (388)
..|..+..+++|++|++++|+++++ .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 3344444445555555555554442 233444445555555555555444444444445555555555555544444444
Q ss_pred CCC-CCcEEeCcCCcCcc
Q 016534 320 HKK-SLKRLFLDGNFLIG 336 (388)
Q Consensus 320 ~l~-~L~~L~Ls~n~l~~ 336 (388)
.++ +|++|++++|++++
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 442 45555555554443
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=5.1e-29 Score=241.10 Aligned_cols=276 Identities=20% Similarity=0.104 Sum_probs=234.8
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
.+++++|+++++.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 47899999999999874 4 689999999999999999874 3 89999999999999999964 3 88999999999
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcc
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTL 241 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 241 (388)
+++|.+++ +| +..+++|++|++++|++++......++|++|++++|...+.+ .++.+++|++|++++|.+++ +
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce-e
Confidence 99999995 55 889999999999999998753344589999999999766655 57889999999999999996 4
Q ss_pred hHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCC
Q 016534 242 EAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHK 321 (388)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 321 (388)
| +..+++|+.|++++|+++++ .+..+++|++|++++|++++ +| +..+++|+.|++++|++++..+..+..+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred c--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 4 88899999999999999985 26789999999999999998 45 7889999999999999998766555554
Q ss_pred C-------CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC-CCCC--------CCCCCCCCccccccccCCCC
Q 016534 322 K-------SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ-GCPV--------SSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 322 ~-------~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~-~~p~--------~~~~~~~L~~l~l~~n~~~~ 383 (388)
+ +|+.|++++|.+.+.+| +..+++|+.|++++|... .+|. .+.++++|+.|++++|++++
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 4 56677788887777776 567899999999999643 2332 26778899999999999987
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=237.69 Aligned_cols=243 Identities=22% Similarity=0.224 Sum_probs=148.1
Q ss_pred EEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCC
Q 016534 86 TQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYN 165 (388)
Q Consensus 86 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 165 (388)
+.++..+.+++ .+|..+. +.+++|+|++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34555566655 4555443 67889999999998888888899999999999999998777788888999999999999
Q ss_pred cCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 166 SLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 166 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
.+++..+..+..+++|++|++++|.+.+..+.. .++|++|++++|...+.+++..+.++++|++|++++|.++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 888555556888888888888888876322211 1344444444433333333334455555555555555554 222
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
.+..+++|++|++++|+++++ .+..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 244445555555555555442 234444455555555555555554444455555555555555555544444444455
Q ss_pred CCcEEeCcCCcC
Q 016534 323 SLKRLFLDGNFL 334 (388)
Q Consensus 323 ~L~~L~Ls~n~l 334 (388)
+|+.|+|++|++
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 555555555544
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.4e-28 Score=245.92 Aligned_cols=301 Identities=22% Similarity=0.193 Sum_probs=235.3
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
.+++++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 56899999999999987777899999999999999999987778899999999999999999977777799999999999
Q ss_pred ccCCcCCC-CcCccccCCCCCcEEEcccCcCCCCCC--------------------------------------------
Q 016534 162 LSYNSLSG-SLPKNTFLMSSLRRLDLSYNKLTGSLP-------------------------------------------- 196 (388)
Q Consensus 162 L~~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~-------------------------------------------- 196 (388)
+++|.+++ ..|..+..+++|++|++++|++++..+
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99999875 467888889999999998887653211
Q ss_pred --------------------------------------------------------------------------------
Q 016534 197 -------------------------------------------------------------------------------- 196 (388)
Q Consensus 197 -------------------------------------------------------------------------------- 196 (388)
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence
Q ss_pred ----------CC-------------------------------------------CCCCCEEEccCCccCcc--c-----
Q 016534 197 ----------KL-------------------------------------------PPNLSELALKNNVLSGV--I----- 216 (388)
Q Consensus 197 ----------~~-------------------------------------------~~~L~~L~l~~n~~~~~--~----- 216 (388)
.. .++|+.++++.|.+... .
T Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 00 02233333333332210 0
Q ss_pred -----------------CccccCCCCccCEEEccCCcCCCcc-hHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCE
Q 016534 217 -----------------TKNSFDGLTQLEVIELSENSFTGTL-EAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVA 278 (388)
Q Consensus 217 -----------------~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 278 (388)
.+..+..+++|+.+++..+...... +..+..+++++.++++.|.+... .+..+..++.+++
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEV 473 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc-cccccccchhhhh
Confidence 0112334455556666555544332 34567788999999999998874 4667778899999
Q ss_pred EEccCCcCC-CCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCc
Q 016534 279 VDLGFNKIQ-GYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNC 357 (388)
Q Consensus 279 L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~ 357 (388)
|++++|.+. +..|..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|++++|+
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 999999754 4567888899999999999999998889999999999999999999998888888899999999999999
Q ss_pred CCCC-CCCCCCC-CCCccccccccCCCC
Q 016534 358 LQGC-PVSSQLC-SPSQKSYSVCKQAYG 383 (388)
Q Consensus 358 l~~~-p~~~~~~-~~L~~l~l~~n~~~~ 383 (388)
++++ |..+..+ ++|+.|++++|++.-
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9875 4557777 579999999888753
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.1e-29 Score=227.97 Aligned_cols=227 Identities=23% Similarity=0.209 Sum_probs=173.6
Q ss_pred EEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCC
Q 016534 86 TQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYN 165 (388)
Q Consensus 86 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 165 (388)
+.++.+++++. .+|.. ..++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67778887776 34543 3578999999999999877788999999999999999999877889999999999999999
Q ss_pred c-CCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHH
Q 016534 166 S-LSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW 244 (388)
Q Consensus 166 ~-l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 244 (388)
. +....|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------HhHhhCCcCCCEEECCCCcccccCHhH
Confidence 7 76555778888888999988888876422 345666777777777777777665666
Q ss_pred hhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 016534 245 FFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSL 324 (388)
Q Consensus 245 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 324 (388)
+..+++|++|++++|++++++ +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred hccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 777777777777777777632 3346667777777777777777767777777777777777777776555667777777
Q ss_pred cEEeCcCCcCccCC
Q 016534 325 KRLFLDGNFLIGKA 338 (388)
Q Consensus 325 ~~L~Ls~n~l~~~~ 338 (388)
+.|++++|++....
T Consensus 228 ~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 228 QYLRLNDNPWVCDC 241 (285)
T ss_dssp CEEECCSSCEECSG
T ss_pred CEEeccCCCccCCC
Confidence 77777777776543
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=5.6e-29 Score=248.20 Aligned_cols=262 Identities=27% Similarity=0.309 Sum_probs=222.1
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
..++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 45899999999998 7777665 89999999999998 4555 5789999999999998 5665 7799999999
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
++|.++ .+|. .+++|++|++++|++++ +|...++|++|++++|.+.+. +. .+++|+.|++++|.+++ +|
T Consensus 109 s~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~l--~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 109 FSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLASL--PA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp CSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSC-CC
T ss_pred cCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCCCCCCCEEECcCCcCCCc--CC---ccCCCCEEECCCCCCCC-Cc
Confidence 999998 4665 57899999999999985 666679999999999998863 32 35789999999999985 45
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
..+++|+.|++++|+++++ |. ..++|+.|++++|.++.. |. .+++|++|++++|.+++ +| ..++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~l--~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLASL--PT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred ---ccCCCCcEEECCCCCCCCC--CC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 4578999999999999973 43 358999999999999964 43 34889999999999995 66 4568
Q ss_pred CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCCCCC
Q 016534 323 SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 323 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~~ip 386 (388)
+|+.|++++|.++. +|. .+++|+.|++++|.++.+|..+..+++|+.|++++|++.+.+|
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 89999999999984 665 5689999999999999999999999999999999999987655
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=7.8e-31 Score=242.25 Aligned_cols=264 Identities=21% Similarity=0.189 Sum_probs=219.3
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
+++..+++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45556666666655555566778899999999999998888889999999999999999986554 8899999999999
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchH
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA 243 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 243 (388)
+|.+++ ++ ..++|++|++++|++++..+...++|++|++++|++.+.. +..++.+++|++|++++|.+++..+.
T Consensus 89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCcccc-cc----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHH
Confidence 999873 33 3489999999999998776666788999999999998765 66788899999999999999987777
Q ss_pred Hhh-cCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 244 WFF-LLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 244 ~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
.+. .+++|++|++++|.++++ +. ...+++|++|++++|++++.++ .+..+++|++|++++|+++ .+|..+..++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHhhccCcCCEEECCCCcCccc--cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 664 789999999999999874 32 3358999999999999997544 5888999999999999999 6788888999
Q ss_pred CCcEEeCcCCcCc-cCCCccCcCCCCCcEEEcCCC-cCCC
Q 016534 323 SLKRLFLDGNFLI-GKAPIGFFTGDVPVAGSLGDN-CLQG 360 (388)
Q Consensus 323 ~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~l~l~~n-~l~~ 360 (388)
+|+.|++++|++. +.+|..+..++.|+.++++++ .+++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 9999999999998 677888888889999888854 3443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=226.62 Aligned_cols=247 Identities=21% Similarity=0.210 Sum_probs=207.8
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCC--CcCccccCCCCCcEEEcc
Q 016534 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSG--SLPKNTFLMSSLRRLDLS 187 (388)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~l~ 187 (388)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 4565443 689999999999995555568999999999999999883 336677789999999999
Q ss_pred cCcCCCCCCC--CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCC
Q 016534 188 YNKLTGSLPK--LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVG 265 (388)
Q Consensus 188 ~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 265 (388)
+|.+.+..+. ..++|++|++++|++.+......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9988742221 23789999999999886542357888999999999999998888888888999999999999987634
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCC
Q 016534 266 ISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345 (388)
Q Consensus 266 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 345 (388)
+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 57788889999999999999998888888899999999999999997777788889999999999999999888888888
Q ss_pred C-CCcEEEcCCCcCC
Q 016534 346 D-VPVAGSLGDNCLQ 359 (388)
Q Consensus 346 ~-~L~~l~l~~n~l~ 359 (388)
+ .|+.+++++|.++
T Consensus 247 ~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 247 PSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTCCEE
T ss_pred hccCCEEEccCCCee
Confidence 4 8999999999887
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.2e-28 Score=233.22 Aligned_cols=245 Identities=22% Similarity=0.200 Sum_probs=213.1
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccC
Q 016534 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYN 189 (388)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n 189 (388)
+.++.++..++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45777777776 4665554 68999999999999888999999999999999999999777788888999999999998
Q ss_pred cCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCC-CCCCCCCCC
Q 016534 190 KLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNN-TLTRVGISK 268 (388)
Q Consensus 190 ~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 268 (388)
++++ +++..+..+++|++|++++|.++...+..+..+++|++|++++| .+..+ .+.
T Consensus 134 ~l~~----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~ 190 (452)
T 3zyi_A 134 WLTV----------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-SEG 190 (452)
T ss_dssp CCSB----------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-CTT
T ss_pred cCCc----------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-Chh
Confidence 8762 22556788999999999999999777778999999999999995 44442 244
Q ss_pred CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCC
Q 016534 269 PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVP 348 (388)
Q Consensus 269 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 348 (388)
.+..+++|++|++++|++++. | .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 688899999999999999975 3 57889999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCcCCCCCCC-CCCCCCCccccccccCCC
Q 016534 349 VAGSLGDNCLQGCPVS-SQLCSPSQKSYSVCKQAY 382 (388)
Q Consensus 349 ~~l~l~~n~l~~~p~~-~~~~~~L~~l~l~~n~~~ 382 (388)
+.|++++|+++.+|.. +..+++|+.|++++|.+.
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999999999987754 688999999999999764
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.7e-31 Score=243.86 Aligned_cols=250 Identities=16% Similarity=0.101 Sum_probs=143.8
Q ss_pred ccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCC-CCCchhhc-------CCCCCCEEEccCCcCCCCcCcc
Q 016534 103 ISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFS-SSVPDSLT-------QLKNLDSLDLSYNSLSGSLPKN 174 (388)
Q Consensus 103 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~ 174 (388)
++..++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556677777777777 556555443 777777777763 34555554 6777777777777777777766
Q ss_pred c--cCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCC-----CCccCEEEccCCcCCCcchHHhhc
Q 016534 175 T--FLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDG-----LTQLEVIELSENSFTGTLEAWFFL 247 (388)
Q Consensus 175 l--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~~~ 247 (388)
+ ..+++|++|++++|.+++. |. .++. +++|++|++++|.+++..+..+..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~----------------------~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DA----------------------WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SS----------------------HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred HHHhcCCCccEEEccCCCCcch-hH----------------------HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5 6677777777777777643 21 1111 144445555555544444444444
Q ss_pred CCCCCEEEccCCCCCCC-CCCCC--CCCCCCCCEEEccCCcCCCC---CcccccCCCCCCEEEccCCcccccCC-ccccC
Q 016534 248 LPALQQVNLSNNTLTRV-GISKP--VDGRSDLVAVDLGFNKIQGY---LPVNFADYPMLSSLSMRYNRLRGGIP-LEFSH 320 (388)
Q Consensus 248 l~~L~~L~L~~n~l~~~-~~~~~--~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~ 320 (388)
+++|++|++++|++.+. .++.. +..+++|++|++++|++++. ....+..+++|++|++++|++++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55555555555544331 01111 13455555666666555521 11223455666666666666665553 33444
Q ss_pred CCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCCC
Q 016534 321 KKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 321 l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~~ 383 (388)
+++|++|++++|.++ .+|..+. ++|+.|++++|+++++|. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 566666666666665 5555554 666666676666666655 6666667777777776655
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=231.14 Aligned_cols=244 Identities=23% Similarity=0.191 Sum_probs=208.7
Q ss_pred CCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEccc
Q 016534 109 LTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSY 188 (388)
Q Consensus 109 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~ 188 (388)
.+.++..+..++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 346778888876 5676554 6899999999999988889999999999999999999977778899999999999999
Q ss_pred CcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCc-CCCcchHHhhcCCCCCEEEccCCCCCCC
Q 016534 189 NKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENS-FTGTLEAWFFLLPALQQVNLSNNTLTRV 264 (388)
Q Consensus 189 n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 264 (388)
|++++..+.. .++|++|++++|.+.... +..+..+++|++|++++|+ +....+..+..+++|++|++++|+++.+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9998554432 378999999999988654 6688899999999999854 4434445788899999999999999864
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcC
Q 016534 265 GISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFT 344 (388)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 344 (388)
| .+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..
T Consensus 201 --~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 --P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp --C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred --c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 4 4677899999999999999988889999999999999999999888888999999999999999998877777888
Q ss_pred CCCCcEEEcCCCcCC
Q 016534 345 GDVPVAGSLGDNCLQ 359 (388)
Q Consensus 345 ~~~L~~l~l~~n~l~ 359 (388)
+++|+.|++++|.+.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 899999999999876
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=229.67 Aligned_cols=254 Identities=20% Similarity=0.174 Sum_probs=215.3
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.++++|+++++++++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 57999999999999766668999999999999999999888889999999999999999999666666999999999999
Q ss_pred cCCcCCCCcCc--cccCCCCCcEEEcccCc-CCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCc
Q 016534 163 SYNSLSGSLPK--NTFLMSSLRRLDLSYNK-LTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENS 236 (388)
Q Consensus 163 ~~n~l~~~~p~--~l~~~~~L~~L~l~~n~-l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 236 (388)
++|.++ .+|. .+..+++|++|++++|. +.+..+.. .++|++|++++|.+.+.. +..+..+++|++|++++|.
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSC
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HHHHhccccCCeecCCCCc
Confidence 999998 5555 78899999999999995 55433322 378999999999999876 7789999999999999999
Q ss_pred CCCcchHHhhcCCCCCEEEccCCCCCCCCCCC--CCCCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCcc
Q 016534 237 FTGTLEAWFFLLPALQQVNLSNNTLTRVGISK--PVDGRSDLVAVDLGFNKIQGY----LPVNFADYPMLSSLSMRYNRL 310 (388)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 310 (388)
++......+..+++|++|++++|++++..... .......++.++++++.+++. +|..+..+++|++|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 97555555667899999999999999854221 122367899999999998863 567788999999999999999
Q ss_pred cccCCcc-ccCCCCCcEEeCcCCcCccCCC
Q 016534 311 RGGIPLE-FSHKKSLKRLFLDGNFLIGKAP 339 (388)
Q Consensus 311 ~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p 339 (388)
+ .+|.. +..+++|++|++++|++.+..|
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9 56655 5899999999999999987654
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-28 Score=223.93 Aligned_cols=224 Identities=23% Similarity=0.200 Sum_probs=195.8
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccC
Q 016534 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYN 189 (388)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n 189 (388)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888886 455544 468999999999999777778999999999999999998777888888899999999888
Q ss_pred c-CCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCC
Q 016534 190 K-LTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISK 268 (388)
Q Consensus 190 ~-l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 268 (388)
. +.. +.+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++++. +.
T Consensus 91 ~~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~ 147 (285)
T 1ozn_A 91 AQLRS----------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DD 147 (285)
T ss_dssp TTCCC----------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT
T ss_pred CCccc----------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-Hh
Confidence 6 442 22556788999999999999999888888999999999999999999843 55
Q ss_pred CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCC
Q 016534 269 PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVP 348 (388)
Q Consensus 269 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 348 (388)
.+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 67889999999999999998777789999999999999999999889999999999999999999998766778899999
Q ss_pred cEEEcCCCcCC
Q 016534 349 VAGSLGDNCLQ 359 (388)
Q Consensus 349 ~~l~l~~n~l~ 359 (388)
+.+++++|++.
T Consensus 228 ~~L~l~~N~~~ 238 (285)
T 1ozn_A 228 QYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCEE
T ss_pred CEEeccCCCcc
Confidence 99999999886
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.1e-30 Score=236.25 Aligned_cols=246 Identities=20% Similarity=0.179 Sum_probs=153.7
Q ss_pred CCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcC-CccCccccc-------CCCCCCEEeeecCcCCCCCchhh--
Q 016534 82 STRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYF-FGPIPASIS-------SLSNLQMLTLRSNSFSSSVPDSL-- 151 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~l-- 151 (388)
..++++++++++.+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 35678888889998 677766544 88999999988 445676665 78999999999999999899876
Q ss_pred cCCCCCCEEEccCCcCCCCcCccccCC-----CCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCc
Q 016534 152 TQLKNLDSLDLSYNSLSGSLPKNTFLM-----SSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQ 226 (388)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~~~p~~l~~~-----~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~ 226 (388)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+ ..++.+++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~ 174 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC----------------------EQVRVFPA 174 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT----------------------TTCCCCSS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH----------------------HHhccCCC
Confidence 8999999999999999966 7776665 788888888888775432 33444455
Q ss_pred cCEEEccCCcCCCc--chHHh--hcCCCCCEEEccCCCCCCCC-CC-CCCCCCCCCCEEEccCCcCCCCCc-ccccCCCC
Q 016534 227 LEVIELSENSFTGT--LEAWF--FLLPALQQVNLSNNTLTRVG-IS-KPVDGRSDLVAVDLGFNKIQGYLP-VNFADYPM 299 (388)
Q Consensus 227 L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~~-~~-~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~ 299 (388)
|++|++++|++.+. .+..+ ..+++|++|++++|++++++ ++ ..+..+++|++|++++|++++.+| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 55555555554433 12222 44455555555555544210 01 111234455555555555554432 23334455
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 300 LSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 300 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.+++++|+++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 555555555555 4444443 4555555555555544 33 555555555555555554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.1e-30 Score=239.33 Aligned_cols=265 Identities=21% Similarity=0.154 Sum_probs=220.5
Q ss_pred CCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEccc
Q 016534 109 LTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSY 188 (388)
Q Consensus 109 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~ 188 (388)
++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4556777777765555556677899999999999998888899999999999999999985544 88999999999999
Q ss_pred CcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCC
Q 016534 189 NKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISK 268 (388)
Q Consensus 189 n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 268 (388)
|.+++..+ .++|++|++++|++.+.. + ..+++|++|++++|.+++..+..+..+++|++|++++|+++++. +.
T Consensus 90 n~l~~l~~--~~~L~~L~l~~n~l~~~~-~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~ 162 (317)
T 3o53_A 90 NYVQELLV--GPSIETLHAANNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FA 162 (317)
T ss_dssp SEEEEEEE--CTTCCEEECCSSCCSEEE-E---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GG
T ss_pred CccccccC--CCCcCEEECCCCccCCcC-c---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-HH
Confidence 99875332 279999999999998764 3 34688999999999999887888999999999999999999854 33
Q ss_pred CC-CCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCC
Q 016534 269 PV-DGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDV 347 (388)
Q Consensus 269 ~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 347 (388)
.+ ..+++|++|++++|.+++.. ....+++|++|++++|++++ +|..+..+++|+.|++++|++++ +|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCC
Confidence 33 46899999999999999763 23358999999999999995 55568899999999999999984 7888889999
Q ss_pred CcEEEcCCCcCC--CCCCCCCCCCCCccccccc-cCCCCCCC
Q 016534 348 PVAGSLGDNCLQ--GCPVSSQLCSPSQKSYSVC-KQAYGRRP 386 (388)
Q Consensus 348 L~~l~l~~n~l~--~~p~~~~~~~~L~~l~l~~-n~~~~~ip 386 (388)
|+.+++++|.+. .+|..+..+++|+.++++. +.+.+..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 999999999998 4677788888899999883 34444443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6e-29 Score=242.62 Aligned_cols=237 Identities=22% Similarity=0.187 Sum_probs=197.2
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
.+++|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++ +|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCC----CCCcCEE
Confidence 34478888888888888777888888888888888888886555 8888888999988888873 332 3788899
Q ss_pred EcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhh-cCCCCCEEEccCCCCCC
Q 016534 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFF-LLPALQQVNLSNNTLTR 263 (388)
Q Consensus 185 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 263 (388)
++++|.+++..+...++|++|++++|.+.+.. +..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99998888776666688999999999988766 66788899999999999999988888776 78999999999999987
Q ss_pred CCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCc-cCCCccC
Q 016534 264 VGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLI-GKAPIGF 342 (388)
Q Consensus 264 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~ 342 (388)
+ +. ...+++|++|++++|.+++.++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus 184 ~--~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 184 V--KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp E--EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred c--cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 4 32 3458999999999999998555 48889999999999999994 7778888999999999999988 6677778
Q ss_pred cCCCCCcEEEcC
Q 016534 343 FTGDVPVAGSLG 354 (388)
Q Consensus 343 ~~~~~L~~l~l~ 354 (388)
..++.++.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888877775
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=5.5e-31 Score=255.58 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=130.5
Q ss_pred CceEEEEeCCCCCCCCCcccc-cCCC----CCCEEEccCCcCCc----cCcccccCCCCCCEEeeecCcCCCCCchhhc-
Q 016534 83 TRVTQLTLDPAGYSGQLTPLI-SQLT----QLTILDLSDNYFFG----PIPASISSLSNLQMLTLRSNSFSSSVPDSLT- 152 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l-~~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~- 152 (388)
+++++|++++|.+.+..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 345555555555443222211 1222 45555555555542 2344455555555555555554432222221
Q ss_pred ----CCCCCCEEEccCCcCCCC----cCccccCCCCCcEEEcccCcCCCCCCC--------CCCCCCEEEccCCccCcc-
Q 016534 153 ----QLKNLDSLDLSYNSLSGS----LPKNTFLMSSLRRLDLSYNKLTGSLPK--------LPPNLSELALKNNVLSGV- 215 (388)
Q Consensus 153 ----~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~~~~~- 215 (388)
..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+. ..++|++|++++|.+.+.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 133455555555554432 233333445555555555544321110 112455555555554431
Q ss_pred ---cCccccCCCCccCEEEccCCcCCCcc-----hHHhhcCCCCCEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCC
Q 016534 216 ---ITKNSFDGLTQLEVIELSENSFTGTL-----EAWFFLLPALQQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFN 284 (388)
Q Consensus 216 ---~~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n 284 (388)
+ +..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++.. ++..+..+++|++|++++|
T Consensus 216 ~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDL-CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHH-HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1 223334455555555555444221 111123445555555555544311 2222333455555555555
Q ss_pred cCCCCCccccc-----CCCCCCEEEccCCccccc----CCccccCCCCCcEEeCcCCcCccCCCccCcC-----CCCCcE
Q 016534 285 KIQGYLPVNFA-----DYPMLSSLSMRYNRLRGG----IPLEFSHKKSLKRLFLDGNFLIGKAPIGFFT-----GDVPVA 350 (388)
Q Consensus 285 ~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----~~~L~~ 350 (388)
.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .+.|+.
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 54432222221 123555555555555433 2333444455555555555554433322221 345555
Q ss_pred EEcCCCcCC-----CCCCCCCCCCCCccccccccCCC
Q 016534 351 GSLGDNCLQ-----GCPVSSQLCSPSQKSYSVCKQAY 382 (388)
Q Consensus 351 l~l~~n~l~-----~~p~~~~~~~~L~~l~l~~n~~~ 382 (388)
|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 555555554 24444444555555555555543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-28 Score=236.61 Aligned_cols=236 Identities=22% Similarity=0.146 Sum_probs=203.9
Q ss_pred CCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEcc
Q 016534 129 SLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALK 208 (388)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 208 (388)
.+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+. ++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~--~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG--PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC--TTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC--CCcCEEECc
Confidence 34589999999999998888999999999999999999986555 88999999999999998854333 799999999
Q ss_pred CCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCC-CCCCCCEEEccCCcCC
Q 016534 209 NNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVD-GRSDLVAVDLGFNKIQ 287 (388)
Q Consensus 209 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~ 287 (388)
+|.+.+.. + ..+++|+.|++++|.+++..|..+..+++|++|++++|.+++. .|..+. .+++|++|++++|.++
T Consensus 108 ~N~l~~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 108 NNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SSCCCCEE-E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCcCCCCC-c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccc
Confidence 99999765 3 3468899999999999988888899999999999999999984 355554 6899999999999999
Q ss_pred CCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC--CCCCCC
Q 016534 288 GYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ--GCPVSS 365 (388)
Q Consensus 288 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~--~~p~~~ 365 (388)
+..+ ...+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..++.|+.+++++|.+. .+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 8633 3468999999999999996544 58899999999999999986 7888889999999999999988 566777
Q ss_pred CCCCCCcccccc
Q 016534 366 QLCSPSQKSYSV 377 (388)
Q Consensus 366 ~~~~~L~~l~l~ 377 (388)
..++.++.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888888775
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6.2e-26 Score=204.54 Aligned_cols=217 Identities=23% Similarity=0.295 Sum_probs=139.7
Q ss_pred CCCCCCCCCCCCccceeeCCCCCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeec
Q 016534 61 TDPCALPRRTHFTCGLLCSSDSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRS 140 (388)
Q Consensus 61 ~~~C~~~~~~~~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 140 (388)
.+.|.| .|+.|.. ..+++.+++++++++. +|..+. +++++|++++|.+++..+..|.++++|++|++++
T Consensus 2 ~~~C~~-------~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 2 EALCKK-------DGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70 (270)
T ss_dssp CCCBGG-------GTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS
T ss_pred CccCCC-------CCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC
Confidence 467888 5666654 2356789999988874 665443 6788899998888876667788888888888888
Q ss_pred CcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccc
Q 016534 141 NSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNS 220 (388)
Q Consensus 141 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (388)
|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ +++..
T Consensus 71 n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~ 128 (270)
T 2o6q_A 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS----------------------LPPRV 128 (270)
T ss_dssp SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC----------------------CCTTT
T ss_pred CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe----------------------eCHHH
Confidence 88885555556778888888888887774444455566666666666665542 11334
Q ss_pred cCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 016534 221 FDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPML 300 (388)
Q Consensus 221 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 300 (388)
++.+++|++|++++|.+++..+..+..+++|++|++++|++++++ +..+..+++|++|++++|++++..+..+..+++|
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 555666666666666666544444555666666666666655532 3334455556666666665555444445555555
Q ss_pred CEEEccCCccc
Q 016534 301 SSLSMRYNRLR 311 (388)
Q Consensus 301 ~~L~L~~n~l~ 311 (388)
+.|++++|.+.
T Consensus 208 ~~L~l~~N~~~ 218 (270)
T 2o6q_A 208 KMLQLQENPWD 218 (270)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCee
Confidence 55555555544
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=7.6e-30 Score=247.54 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=205.5
Q ss_pred CceEEEEeCCCCCCC----CCcccccCCCCCCEEEccCCcCCccCcccc-cCCC----CCCEEeeecCcCCC----CCch
Q 016534 83 TRVTQLTLDPAGYSG----QLTPLISQLTQLTILDLSDNYFFGPIPASI-SSLS----NLQMLTLRSNSFSS----SVPD 149 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~----~L~~L~L~~n~l~~----~~p~ 149 (388)
+++++|+++++++++ .++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|.+++ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 567788888887764 345667777888888888887765433332 2343 58888888887774 4567
Q ss_pred hhcCCCCCCEEEccCCcCCCCcCccc-----cCCCCCcEEEcccCcCCCCC----CCC---CCCCCEEEccCCccCcccC
Q 016534 150 SLTQLKNLDSLDLSYNSLSGSLPKNT-----FLMSSLRRLDLSYNKLTGSL----PKL---PPNLSELALKNNVLSGVIT 217 (388)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~~~~L~~L~l~~n~l~~~~----~~~---~~~L~~L~l~~n~~~~~~~ 217 (388)
.+..+++|++|++++|.+++..+..+ ...++|++|++++|++++.. +.. .++|++|++++|.+.+..
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~- 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG- 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH-
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH-
Confidence 77778888888888887764333322 22557888888888776532 111 267888888888876432
Q ss_pred ccccC-----CCCccCEEEccCCcCCCc----chHHhhcCCCCCEEEccCCCCCCCCC----CCCCCCCCCCCEEEccCC
Q 016534 218 KNSFD-----GLTQLEVIELSENSFTGT----LEAWFFLLPALQQVNLSNNTLTRVGI----SKPVDGRSDLVAVDLGFN 284 (388)
Q Consensus 218 ~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~L~~n 284 (388)
...+. ..++|++|++++|.+++. ++..+..+++|++|++++|++++..+ +.....+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 22222 245788888888888753 56777778888888888888765211 112234788888999888
Q ss_pred cCCCC----CcccccCCCCCCEEEccCCcccccCCccccC-----CCCCcEEeCcCCcCccC----CCccCcCCCCCcEE
Q 016534 285 KIQGY----LPVNFADYPMLSSLSMRYNRLRGGIPLEFSH-----KKSLKRLFLDGNFLIGK----APIGFFTGDVPVAG 351 (388)
Q Consensus 285 ~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~l 351 (388)
.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..++.|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 88864 4556667888999999998887554443332 36889999999988775 45566677899999
Q ss_pred EcCCCcCCCC-CCCCC-----CCCCCccccccccCCCC
Q 016534 352 SLGDNCLQGC-PVSSQ-----LCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 352 ~l~~n~l~~~-p~~~~-----~~~~L~~l~l~~n~~~~ 383 (388)
++++|.+++. +..+. .+++|+.|++++|.+++
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 9999988632 22222 26789999999998874
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.1e-25 Score=203.43 Aligned_cols=214 Identities=21% Similarity=0.211 Sum_probs=150.7
Q ss_pred CCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccC
Q 016534 98 QLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFL 177 (388)
Q Consensus 98 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 177 (388)
.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 3454443 57899999999998777778888999999999999888776777888888888888888888666667777
Q ss_pred CCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCc-chHHhhcCCCCCEEEc
Q 016534 178 MSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGT-LEAWFFLLPALQQVNL 256 (388)
Q Consensus 178 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L 256 (388)
+++|++|++++|.+.+ +.+..++.+++|++|++++|.+++. +|..+..+++|++|++
T Consensus 99 l~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 99 LSSLQKLVAVETNLAS----------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CTTCCEEECTTSCCCC----------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CccccEEECCCCCccc----------------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 7788888877776652 1133466777888888888887753 4777777777777877
Q ss_pred cCCCCCCCCCCCCCCCCCCCC----EEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCC
Q 016534 257 SNNTLTRVGISKPVDGRSDLV----AVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGN 332 (388)
Q Consensus 257 ~~n~l~~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 332 (388)
++|+++++. +..+..+.+|+ +|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|
T Consensus 157 s~N~l~~~~-~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 157 SSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSCCCEEC-GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCCCCcCC-HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 777777632 33344444444 677777777665444443 336777777777777555555666677777777777
Q ss_pred cCccC
Q 016534 333 FLIGK 337 (388)
Q Consensus 333 ~l~~~ 337 (388)
++.+.
T Consensus 235 ~~~c~ 239 (276)
T 2z62_A 235 PWDCS 239 (276)
T ss_dssp CBCCC
T ss_pred ccccc
Confidence 66643
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.9e-24 Score=214.27 Aligned_cols=238 Identities=26% Similarity=0.307 Sum_probs=203.2
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
++++.|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 67999999999998 4665 67999999999999984 555 67899999999999995 554 6789999999
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
++|.++ .+|.. +++|++|++++|.+++ +|..+++|+.|++++|.+.+ + + ..+++|+.|++++|.+++ +|
T Consensus 129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~-l-~---~~~~~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTS-L-P---MLPSGLQELSVSDNQLAS-LP 197 (622)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-C-C---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCC-C-c---ccCCCCcEEECCCCCCCC-CC
Confidence 999998 56764 4899999999999984 66677899999999999986 3 3 457899999999999985 44
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCC
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKK 322 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 322 (388)
. ..++|+.|++++|.++.+ |. .+++|++|++++|++++ +| ..+++|+.|++++|+++ .+|. .++
T Consensus 198 ~---~~~~L~~L~L~~N~l~~l--~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 198 T---LPSELYKLWAYNNRLTSL--PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp C---CCTTCCEEECCSSCCSSC--CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred C---ccchhhEEECcCCccccc--CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 3 347899999999999973 43 35899999999999997 44 45689999999999999 5665 568
Q ss_pred CCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCC
Q 016534 323 SLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQG 360 (388)
Q Consensus 323 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~ 360 (388)
+|+.|+|++|.++ .+|..+..+++|+.|++++|++++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 8999999999998 789999999999999999999874
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2e-25 Score=201.45 Aligned_cols=225 Identities=22% Similarity=0.225 Sum_probs=153.1
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccC
Q 016534 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYN 189 (388)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n 189 (388)
..+++..+.+.+.. .+..+++|+.|++++|.+.. + +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC
Confidence 34455555554332 24456677777777777663 2 246667777777777777663 2 35566666666666666
Q ss_pred cCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCC
Q 016534 190 KLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKP 269 (388)
Q Consensus 190 ~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 269 (388)
.+++ +++..++.+++|++|++++|.+++..+..+..+++|++|++++|++++++ +..
T Consensus 96 ~l~~----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 152 (272)
T 3rfs_A 96 QLQS----------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGV 152 (272)
T ss_dssp CCCC----------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred ccCc----------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHH
Confidence 5542 11445667788888888888887766667777888888888888877642 445
Q ss_pred CCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCc
Q 016534 270 VDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPV 349 (388)
Q Consensus 270 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 349 (388)
+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+. ++.++
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~ 225 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIR 225 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTH
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHH
Confidence 66778888888888888876666677778888888888888877776677788888888888876643 44677
Q ss_pred EEEcCCCcCC-CCCCCCCCCCC
Q 016534 350 AGSLGDNCLQ-GCPVSSQLCSP 370 (388)
Q Consensus 350 ~l~l~~n~l~-~~p~~~~~~~~ 370 (388)
.++++.|.++ .+|..++.++.
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHhCCCcccCcccccCC
Confidence 7777777776 46766665543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.6e-25 Score=198.00 Aligned_cols=222 Identities=22% Similarity=0.189 Sum_probs=173.8
Q ss_pred EEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcC
Q 016534 112 LDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKL 191 (388)
Q Consensus 112 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l 191 (388)
.+..+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444454554 3555443 4688888888888876666788888888888888888755555677777788887777766
Q ss_pred CCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCC
Q 016534 192 TGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVD 271 (388)
Q Consensus 192 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 271 (388)
.+ +++..+.++++|++|++++|.+++..+..+..+++|++|++++|+++++.+|..+.
T Consensus 89 ~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 89 QS----------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp CE----------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred Cc----------------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 52 22556788899999999999998776667888999999999999998866788888
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCC----EEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCC
Q 016534 272 GRSDLVAVDLGFNKIQGYLPVNFADYPMLS----SLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDV 347 (388)
Q Consensus 272 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 347 (388)
.+++|++|++++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccc
Confidence 899999999999999987777776666666 899999999865555444 458999999999988766666778899
Q ss_pred CcEEEcCCCcCC
Q 016534 348 PVAGSLGDNCLQ 359 (388)
Q Consensus 348 L~~l~l~~n~l~ 359 (388)
|+.+++++|++.
T Consensus 226 L~~L~l~~N~~~ 237 (276)
T 2z62_A 226 LQKIWLHTNPWD 237 (276)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEEccCCccc
Confidence 999999999887
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.8e-24 Score=196.96 Aligned_cols=203 Identities=18% Similarity=0.118 Sum_probs=117.7
Q ss_pred hcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEE
Q 016534 151 LTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVI 230 (388)
Q Consensus 151 l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 230 (388)
+.+++++++++++++.++ .+|..+. +++++|++++|.++ +.. +..+..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~---------------------~~~-~~~~~~l~~L~~L 60 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY---------------------TFS-LATLMPYTRLTQL 60 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS---------------------EEE-GGGGTTCTTCCEE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC---------------------ccC-HHHhhcCCCCCEE
Confidence 345556666666666655 4444332 34555555555544 332 4455666666666
Q ss_pred EccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcc
Q 016534 231 ELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRL 310 (388)
Q Consensus 231 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 310 (388)
++++|.+++..+. ..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 61 ~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 61 NLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp ECTTSCCCEEECC--SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccCcccCC--CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 6666666533221 455666666666666653 344555566666666666666665555566666666666666666
Q ss_pred cccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCCC
Q 016534 311 RGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQAY 382 (388)
Q Consensus 311 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~~ 382 (388)
++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|+++.+|..+..+.+|+.+++++|.+.
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 655555555666666666666666543333445566666666666666666666666666666666666553
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.4e-24 Score=192.36 Aligned_cols=200 Identities=26% Similarity=0.294 Sum_probs=125.8
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEE
Q 016534 155 KNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIE 231 (388)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 231 (388)
.+.++++++++.++ .+|..+. +++++|++++|++.+..+.. .++|++|++++|.+... ++..+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEE
Confidence 35677888877777 5665443 56777777777776443321 25666666666666633 244456666666666
Q ss_pred ccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 232 LSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 232 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
+++|.+++..+..+..+++|++|++++|+++++. +..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 6666666555555666666666666666666532 444556666666666666666655555666666666666666666
Q ss_pred ccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 312 GGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 312 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+..+..+..+++|+.|++++|++++..+..+..++.|+.+++++|.+.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 555555666666666666666666544445556666666666666654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.7e-24 Score=193.57 Aligned_cols=198 Identities=26% Similarity=0.338 Sum_probs=93.5
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
+++++++++++++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++. +.. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECC
Confidence 3444555554444 2332221 3444555555554444444444444555555554444422 111 344444444444
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchH
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA 243 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 243 (388)
+|.++ .+|..+..+++|++|++++|+++ + +++..|..+++|++|++++|++++..+.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~---------------------~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLT---------------------S-LPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCC---------------------C-CCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCc---------------------c-cCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 44444 33433344444444444444333 1 1133455555566666666555544444
Q ss_pred HhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 244 WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
.+..+++|+.|++++|+++.++ +..+..+++|++|++++|+++. +|..+...++|+.+++++|.+.
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred hcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 4555555555555555555421 2233445555555555555553 3444444455555555555544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.2e-24 Score=196.29 Aligned_cols=211 Identities=21% Similarity=0.167 Sum_probs=140.5
Q ss_pred ccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCc
Q 016534 103 ISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLR 182 (388)
Q Consensus 103 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 182 (388)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4456677777777776653 2 2466677777777777777642 3566777777777777777755555566677777
Q ss_pred EEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 183 RLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 183 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
+|++++|++++.. +..++.+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 113 ~L~L~~n~l~~~~----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 113 ELVLVENQLQSLP----------------------DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp EEECTTSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCccC----------------------HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 7777777665211 334556667777777777776655566666777777777777777
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccC
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGF 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 342 (388)
++ .+..+..+++|++|++++|++++.++..+..+++|+.|++++|.+.+. +++++.++++.|.++|.+|..+
T Consensus 171 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 171 SL-PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred cc-CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 63 244456677777777777777776666667777777777777766643 3356777777777777777776
Q ss_pred cCCCC
Q 016534 343 FTGDV 347 (388)
Q Consensus 343 ~~~~~ 347 (388)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 65543
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=204.15 Aligned_cols=230 Identities=16% Similarity=0.051 Sum_probs=158.8
Q ss_pred CCCEEeeecCcCCCCCch---hhcCCCCCCEEEccCCcCCCCcCccc--cCCCCCcEEEcccCcCCCCCCCCCCCCCEEE
Q 016534 132 NLQMLTLRSNSFSSSVPD---SLTQLKNLDSLDLSYNSLSGSLPKNT--FLMSSLRRLDLSYNKLTGSLPKLPPNLSELA 206 (388)
Q Consensus 132 ~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 206 (388)
.++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------- 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------- 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-------
Confidence 466666666655421110 11234567788888877777777766 677777777777777764332110
Q ss_pred ccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCC---CCCCCCCCCCCCCCEEEccC
Q 016534 207 LKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTR---VGISKPVDGRSDLVAVDLGF 283 (388)
Q Consensus 207 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~~L~~L~L~~ 283 (388)
...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+ +..+..+..+++|++|++++
T Consensus 138 -----------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 138 -----------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp -----------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred -----------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 1233456777777777777776666777777777777777777654 12123345677888888888
Q ss_pred CcCCCCCc--c-cccCCCCCCEEEccCCcccccCCccccCC---CCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCc
Q 016534 284 NKIQGYLP--V-NFADYPMLSSLSMRYNRLRGGIPLEFSHK---KSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNC 357 (388)
Q Consensus 284 n~l~~~~~--~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~ 357 (388)
|+++.... . .+..+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+
T Consensus 207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 207 TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence 88864221 1 24677888888888888887777777666 58888888888887 6677664 788899999998
Q ss_pred CCCCCCCCCCCCCCccccccccCCCC
Q 016534 358 LQGCPVSSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 358 l~~~p~~~~~~~~L~~l~l~~n~~~~ 383 (388)
++++|. +..+++|+.|++++|+++.
T Consensus 284 l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 284 LNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCch-hhhCCCccEEECcCCCCCC
Confidence 888766 6788889999999998865
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.2e-26 Score=218.23 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=185.1
Q ss_pred EEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCc----ccccCCC-CCCEEeeecCcCCCCCchhhcCC-----CC
Q 016534 87 QLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIP----ASISSLS-NLQMLTLRSNSFSSSVPDSLTQL-----KN 156 (388)
Q Consensus 87 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~ 156 (388)
...++.++++|.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788889998888887777889999999999987666 6778888 89999999999988777777664 89
Q ss_pred CCEEEccCCcCCCCcCccc----cCC-CCCcEEEcccCcCCCCCCC--------CCCCCCEEEccCCccCcccC---ccc
Q 016534 157 LDSLDLSYNSLSGSLPKNT----FLM-SSLRRLDLSYNKLTGSLPK--------LPPNLSELALKNNVLSGVIT---KNS 220 (388)
Q Consensus 157 L~~L~L~~n~l~~~~p~~l----~~~-~~L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~~~~~~~---~~~ 220 (388)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+. .+.+|++|++++|.+.+... +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999886655543 344 7899999999998754431 13588888888888774210 223
Q ss_pred cCCCC-ccCEEEccCCcCCCcchHHh----hcC-CCCCEEEccCCCCCCCC---CCCCCCC-CCCCCEEEccCCcCCCCC
Q 016534 221 FDGLT-QLEVIELSENSFTGTLEAWF----FLL-PALQQVNLSNNTLTRVG---ISKPVDG-RSDLVAVDLGFNKIQGYL 290 (388)
Q Consensus 221 l~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~---~~~~~~~-~~~L~~L~L~~n~l~~~~ 290 (388)
+..++ +|++|++++|.+++..+..+ ... ++|++|++++|.+++.. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44454 88888888888876665444 344 58888888888887632 1222323 458888888888888755
Q ss_pred c----ccccCCCCCCEEEccCCccccc-------CCccccCCCCCcEEeCcCCcCccCCC
Q 016534 291 P----VNFADYPMLSSLSMRYNRLRGG-------IPLEFSHKKSLKRLFLDGNFLIGKAP 339 (388)
Q Consensus 291 ~----~~l~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~p 339 (388)
+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 2345678888888888874422 23356677788888888888876644
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.1e-26 Score=210.49 Aligned_cols=257 Identities=19% Similarity=0.168 Sum_probs=166.0
Q ss_pred cceeeCCCCCceEEEEeCCCCCCCCCcccccCC--CCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCC-Cchh
Q 016534 74 CGLLCSSDSTRVTQLTLDPAGYSGQLTPLISQL--TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSS-VPDS 150 (388)
Q Consensus 74 ~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~ 150 (388)
.++.|+. ..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..
T Consensus 40 ~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 40 YRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp HHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH
Confidence 5666542 45789999988876 4556666 8999999999999877665 56789999999999998865 7888
Q ss_pred hcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccC-cCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCE
Q 016534 151 LTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYN-KLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEV 229 (388)
Q Consensus 151 l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 229 (388)
+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+ +..+..+++|++
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~--------------------~l-~~~~~~~~~L~~ 172 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--------------------AL-QTLLSSCSRLDE 172 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH--------------------HH-HHHHHHCTTCCE
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH--------------------HH-HHHHhcCCCCCE
Confidence 899999999999999988788888888999999999888 45421 01 223445566666
Q ss_pred EEccCC-cCCCc-chHHhhcCC-CCCEEEccCC--CCCCCCCCCCCCCCCCCCEEEccCCc-CCCCCcccccCCCCCCEE
Q 016534 230 IELSEN-SFTGT-LEAWFFLLP-ALQQVNLSNN--TLTRVGISKPVDGRSDLVAVDLGFNK-IQGYLPVNFADYPMLSSL 303 (388)
Q Consensus 230 L~l~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L 303 (388)
|++++| .+++. ++..+..++ +|++|++++| .+++..++..+..+++|++|++++|. +++..+..+..+++|++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 666666 55543 455555666 6666666666 33322233334445666666666666 554455555666666666
Q ss_pred EccCCc-ccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCC
Q 016534 304 SMRYNR-LRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQG 360 (388)
Q Consensus 304 ~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~ 360 (388)
++++|. +.......+..+++|+.|++++| ++......+. ..+..|+++.|++++
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence 666663 22222224555666666666666 2222111111 123444456666664
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=3.9e-24 Score=196.67 Aligned_cols=223 Identities=19% Similarity=0.215 Sum_probs=137.8
Q ss_pred CCCCEEEccCCcCCccCcc---cccCCCCCCEEeeecCcCCCCCchhh--cCCCCCCEEEccCCcCCCCcC----ccccC
Q 016534 107 TQLTILDLSDNYFFGPIPA---SISSLSNLQMLTLRSNSFSSSVPDSL--TQLKNLDSLDLSYNSLSGSLP----KNTFL 177 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~ 177 (388)
..++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777777665432111 11234557777777777777777766 677777777777777775444 23445
Q ss_pred CCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcc---cCccccCCCCccCEEEccCCcCCCcchH----Hhhc
Q 016534 178 MSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGV---ITKNSFDGLTQLEVIELSENSFTGTLEA----WFFL 247 (388)
Q Consensus 178 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~ 247 (388)
+++|++|++++|.+.+..+.. .++|++|++++|++.+. .....++.+++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 777777777777776544332 25566666666655432 112234567777888888877762 222 2456
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCC---CCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 016534 248 LPALQQVNLSNNTLTRVGISKPVDGR---SDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSL 324 (388)
Q Consensus 248 l~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 324 (388)
+++|++|++++|++++. .|..+..+ ++|++|++++|+++. +|..+. ++|++|++++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRAT-VNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCC-CCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCcc-chhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 77777777777777763 35444444 577777777777773 444443 6677777777777743 32 4556667
Q ss_pred cEEeCcCCcCcc
Q 016534 325 KRLFLDGNFLIG 336 (388)
Q Consensus 325 ~~L~Ls~n~l~~ 336 (388)
+.|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 777777776654
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.8e-25 Score=207.76 Aligned_cols=251 Identities=18% Similarity=0.145 Sum_probs=190.7
Q ss_pred CCCEEEccCCcCCccCcccccCC--CCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCC-cCccccCCCCCcEE
Q 016534 108 QLTILDLSDNYFFGPIPASISSL--SNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGS-LPKNTFLMSSLRRL 184 (388)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L 184 (388)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677888877765 3445555 6778888888877765554 45677788888877777644 66666667777777
Q ss_pred EcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCC-cCCC-cchHHhhcCCCCCEEEccCC-CC
Q 016534 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSEN-SFTG-TLEAWFFLLPALQQVNLSNN-TL 261 (388)
Q Consensus 185 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l 261 (388)
++++|.++ +.. +..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+
T Consensus 124 ~L~~~~l~---------------------~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 124 SLEGLRLS---------------------DPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ECTTCBCC---------------------HHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred eCcCcccC---------------------HHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 77666554 333 556788999999999999 6775 36777899999999999999 88
Q ss_pred CCCCCCCCCCCCC-CCCEEEccCC--cCC-CCCcccccCCCCCCEEEccCCc-ccccCCccccCCCCCcEEeCcCCc-Cc
Q 016534 262 TRVGISKPVDGRS-DLVAVDLGFN--KIQ-GYLPVNFADYPMLSSLSMRYNR-LRGGIPLEFSHKKSLKRLFLDGNF-LI 335 (388)
Q Consensus 262 ~~~~~~~~~~~~~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~ 335 (388)
++..++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 8643455566788 9999999999 565 4466677889999999999999 787888899999999999999995 33
Q ss_pred cCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCC-CCCccccccccCCCCCCCC
Q 016534 336 GKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLC-SPSQKSYSVCKQAYGRRPR 387 (388)
Q Consensus 336 ~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~-~~L~~l~l~~n~~~~~ip~ 387 (388)
......+..+++|+.|++++| ++. ..+..+ ..++.|++++|.+++.+|+
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCC
Confidence 333336788999999999999 331 122333 2377888999999999886
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.7e-25 Score=212.08 Aligned_cols=244 Identities=19% Similarity=0.185 Sum_probs=139.1
Q ss_pred CCcccccCCCCCCEEEccCCcCCcc----CcccccCCCCCCEEeeecC---cCCCCCchhh-------cCCCCCCEEEcc
Q 016534 98 QLTPLISQLTQLTILDLSDNYFFGP----IPASISSLSNLQMLTLRSN---SFSSSVPDSL-------TQLKNLDSLDLS 163 (388)
Q Consensus 98 ~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 163 (388)
.++..+..+++|++|+|++|.+++. ++..+..+++|++|++++| .+++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3555677778888888888887765 3344667888888888875 3444555554 577888888888
Q ss_pred CCcCCC----CcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCC---------CccCEE
Q 016534 164 YNSLSG----SLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGL---------TQLEVI 230 (388)
Q Consensus 164 ~n~l~~----~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l---------~~L~~L 230 (388)
+|.+.+ .+|..+..+++|++|++++|.+++..+.. + +..+..+ ++|++|
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-----------------l-~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK-----------------I-ARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH-----------------H-HHHHHHHHHHHHHHTCCCCCEE
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH-----------------H-HHHHHHHhhhhhcccCCCCcEE
Confidence 888875 36667777788888888877765211100 0 1111112 455555
Q ss_pred EccCCcCC-Ccch---HHhhcCCCCCEEEccCCCCCCCC----CCCCCCCCCCCCEEEccCCcCC----CCCcccccCCC
Q 016534 231 ELSENSFT-GTLE---AWFFLLPALQQVNLSNNTLTRVG----ISKPVDGRSDLVAVDLGFNKIQ----GYLPVNFADYP 298 (388)
Q Consensus 231 ~l~~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~ 298 (388)
++++|+++ +.++ ..+..+++|++|++++|+++... .+..+..+++|++|++++|.++ +.+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 55555554 2223 24445555555555555554210 1223444555555555555554 33444555555
Q ss_pred CCCEEEccCCccccc----CCcccc--CCCCCcEEeCcCCcCcc----CCCccC-cCCCCCcEEEcCCCcCC
Q 016534 299 MLSSLSMRYNRLRGG----IPLEFS--HKKSLKRLFLDGNFLIG----KAPIGF-FTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 299 ~L~~L~L~~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l~~----~~p~~~-~~~~~L~~l~l~~n~l~ 359 (388)
+|++|++++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|.++
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 566666665555543 334442 25555666666665555 344444 33455566666655555
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.6e-26 Score=214.19 Aligned_cols=248 Identities=19% Similarity=0.169 Sum_probs=186.1
Q ss_pred EEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCc----hhhcCCC-CCCEEEccCCcCCCCcCccccCC-----CC
Q 016534 111 ILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVP----DSLTQLK-NLDSLDLSYNSLSGSLPKNTFLM-----SS 180 (388)
Q Consensus 111 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~-----~~ 180 (388)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..|..++ +|++|++++|.+++..+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999999888877777789999999999997776 7788888 99999999999997767666554 89
Q ss_pred CcEEEcccCcCCCCCCC--------CCCCCCEEEccCCccCcccCccc----cCC-CCccCEEEccCCcCCCc----chH
Q 016534 181 LRRLDLSYNKLTGSLPK--------LPPNLSELALKNNVLSGVITKNS----FDG-LTQLEVIELSENSFTGT----LEA 243 (388)
Q Consensus 181 L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~----l~~-l~~L~~L~l~~n~l~~~----~~~ 243 (388)
|++|++++|.+++..+. .+++|++|++++|.+.+.. ... +.. .++|++|++++|.+++. ++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999998865442 2268999999999887543 322 334 36899999999988753 344
Q ss_pred HhhcCC-CCCEEEccCCCCCCCCCCC----CCCCC-CCCCEEEccCCcCCCCC----cccccC-CCCCCEEEccCCcccc
Q 016534 244 WFFLLP-ALQQVNLSNNTLTRVGISK----PVDGR-SDLVAVDLGFNKIQGYL----PVNFAD-YPMLSSLSMRYNRLRG 312 (388)
Q Consensus 244 ~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~~~-~~L~~L~L~~n~l~~~~----~~~l~~-l~~L~~L~L~~n~l~~ 312 (388)
.+...+ +|++|++++|++++.. +. .+..+ ++|++|++++|.+++.. +..+.. .++|++|++++|.+++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHhcCCccccEeeecCCCCchhh-HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 455555 8999999999887632 22 22334 58999999999988643 334444 4589999999998886
Q ss_pred cCC----ccccCCCCCcEEeCcCCcCccC-------CCccCcCCCCCcEEEcCCCcCCC
Q 016534 313 GIP----LEFSHKKSLKRLFLDGNFLIGK-------APIGFFTGDVPVAGSLGDNCLQG 360 (388)
Q Consensus 313 ~~p----~~~~~l~~L~~L~Ls~n~l~~~-------~p~~~~~~~~L~~l~l~~n~l~~ 360 (388)
..+ ..+..+++|+.|++++|.+.+. ++..+..++.|+.+++++|.+..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 544 3456678899999999884433 23456677888889999998763
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.7e-23 Score=182.16 Aligned_cols=197 Identities=18% Similarity=0.176 Sum_probs=143.3
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCCEEeeecCc-CCCCCchhhcCCCCCCEEEccC-CcCCCCcCccccCCCCCcEE
Q 016534 107 TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNS-FSSSVPDSLTQLKNLDSLDLSY-NSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~~~~L~~L 184 (388)
++|++|++++|.+++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999987777788999999999999997 8766666888999999999998 88885555677788888888
Q ss_pred EcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccC---EEEccCC-cCCCcchHHhhcCCCCC-EEEccCC
Q 016534 185 DLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLE---VIELSEN-SFTGTLEAWFFLLPALQ-QVNLSNN 259 (388)
Q Consensus 185 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n 259 (388)
++++|.+++ +| . +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|
T Consensus 111 ~l~~n~l~~-lp----------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM-FP----------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEECCCS-CC----------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred eCCCCCCcc-cc----------------------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 888887763 22 1 44455555 7888877 77755556677777777 7777777
Q ss_pred CCCCCCCCCCCCCCCCCCEEEccCCc-CCCCCcccccCC-CCCCEEEccCCcccccCCccccCCCCCcEEeCcCC
Q 016534 260 TLTRVGISKPVDGRSDLVAVDLGFNK-IQGYLPVNFADY-PMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGN 332 (388)
Q Consensus 260 ~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 332 (388)
+++.+ |......++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 167 ~l~~i--~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSV--QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEE--CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCccc--CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 77743 3322223677777777774 776666666777 77777777777777 34433 4566777777665
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=7.3e-26 Score=214.66 Aligned_cols=246 Identities=16% Similarity=0.133 Sum_probs=189.1
Q ss_pred CcccccCCCCCCEEeeecCcCCCCCc----hhhcCCCCCCEEEccCCc---CCCCcCccc-------cCCCCCcEEEccc
Q 016534 123 IPASISSLSNLQMLTLRSNSFSSSVP----DSLTQLKNLDSLDLSYNS---LSGSLPKNT-------FLMSSLRRLDLSY 188 (388)
Q Consensus 123 ~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~---l~~~~p~~l-------~~~~~L~~L~l~~ 188 (388)
++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55667777888888888888876533 336678888888888754 334455444 5677777777777
Q ss_pred CcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHH----hhcC---------CCCCEEE
Q 016534 189 NKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAW----FFLL---------PALQQVN 255 (388)
Q Consensus 189 n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~ 255 (388)
|.+.+.... .+ +..+..+++|++|++++|.++...+.. +..+ ++|++|+
T Consensus 104 n~l~~~~~~-----------------~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 104 NAFGPTAQE-----------------PL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp CCCCTTTHH-----------------HH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred CcCCHHHHH-----------------HH-HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 766521100 12 456778899999999999997544443 3344 8999999
Q ss_pred ccCCCCCCCCCC---CCCCCCCCCCEEEccCCcCCC-----CCcccccCCCCCCEEEccCCccc----ccCCccccCCCC
Q 016534 256 LSNNTLTRVGIS---KPVDGRSDLVAVDLGFNKIQG-----YLPVNFADYPMLSSLSMRYNRLR----GGIPLEFSHKKS 323 (388)
Q Consensus 256 L~~n~l~~~~~~---~~~~~~~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~ 323 (388)
+++|+++...++ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ +.+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 999999853444 345568899999999999983 23447788999999999999996 678889999999
Q ss_pred CcEEeCcCCcCccC----CCccC--cCCCCCcEEEcCCCcCCC-----CCCCC-CCCCCCccccccccCCCCCCC
Q 016534 324 LKRLFLDGNFLIGK----APIGF--FTGDVPVAGSLGDNCLQG-----CPVSS-QLCSPSQKSYSVCKQAYGRRP 386 (388)
Q Consensus 324 L~~L~Ls~n~l~~~----~p~~~--~~~~~L~~l~l~~n~l~~-----~p~~~-~~~~~L~~l~l~~n~~~~~ip 386 (388)
|++|+|++|.+++. ++..+ +.+++|+.|++++|.++. +|..+ .++++|++|++++|++++..|
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999999876 45666 348999999999999986 88777 668999999999999988653
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.4e-23 Score=182.38 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=78.6
Q ss_pred cCCCCccCEEEccC-CcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCC---EEEccCC-cCCCCCccccc
Q 016534 221 FDGLTQLEVIELSE-NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLV---AVDLGFN-KIQGYLPVNFA 295 (388)
Q Consensus 221 l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~l~ 295 (388)
+.++++|++|++++ |.+++..+..|..+++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|.
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCccccc
Confidence 34444444444444 44443333344444445555555554444 222 34444444 5555555 55554444555
Q ss_pred CCCCCC-EEEccCCcccccCCccccCCCCCcEEeCcCCc-CccCCCccCcCC-CCCcEEEcCCCcCCCCCCCCCCCCCCc
Q 016534 296 DYPMLS-SLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNF-LIGKAPIGFFTG-DVPVAGSLGDNCLQGCPVSSQLCSPSQ 372 (388)
Q Consensus 296 ~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~~-~~L~~l~l~~n~l~~~p~~~~~~~~L~ 372 (388)
.+++|+ +|++++|+++ .+|......++|++|++++|+ +++..+..+..+ ++|+.+++++|.++.+|.. .+++|+
T Consensus 153 ~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~ 229 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLK 229 (239)
T ss_dssp TTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCS
T ss_pred chhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCc
Confidence 556666 6666666655 333322222556666666663 554444455555 6666666666666665553 455566
Q ss_pred ccccccc
Q 016534 373 KSYSVCK 379 (388)
Q Consensus 373 ~l~l~~n 379 (388)
.|+++.+
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 6665544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.8e-22 Score=185.33 Aligned_cols=190 Identities=21% Similarity=0.347 Sum_probs=94.2
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEc
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDL 162 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 162 (388)
.++++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 345555555554442 22 34445555555555555543222 44555555555555554432 2 3444455555555
Q ss_pred cCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch
Q 016534 163 SYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE 242 (388)
Q Consensus 163 ~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 242 (388)
++|.+++ ++. +..+++|++|++++|.++ +. + .+..+++|++|++++|.+++..+
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~---------------------~~--~-~l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQIT---------------------NI--S-PLAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCC---------------------CC--G-GGGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccC---------------------cC--c-cccCCCCccEEEccCCcCCCChh
Confidence 5554442 221 344444444444444333 11 1 14455666666666666654322
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 243 AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
+..+++|++|++++|++++++ . +..+++|++|++++|++++..+ +..+++|+.|++++|.++
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred --hcCCCCCCEEECCCCccCcCh--h-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 555666666666666665532 1 4455666666666666655332 455566666666666655
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.1e-22 Score=176.89 Aligned_cols=178 Identities=24% Similarity=0.207 Sum_probs=87.1
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCC
Q 016534 156 NLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSEN 235 (388)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 235 (388)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+ ..++++++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~----------------------~~~~~l~~L~~L~L~~n 69 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD----------------------ATFRGLTKLTWLNLDYN 69 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH----------------------hHhcCcccCCEEECCCC
Confidence 4556666666666 5555443 456666666666554333 33444444555555555
Q ss_pred cCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCC
Q 016534 236 SFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIP 315 (388)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 315 (388)
.+++..+..+..+++|++|++++|++++++ +..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 444444444444445555555555444421 2333444455555555555444444444444455555555554443333
Q ss_pred ccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 316 LEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 316 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
..+..+++|+.|+|++|++++..+..+..+++|+.+++++|++.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 34444444555555555444444444444444555555544443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.8e-22 Score=185.31 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=159.9
Q ss_pred ccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCc
Q 016534 103 ISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLR 182 (388)
Q Consensus 103 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 182 (388)
...+++|++|++++|.++. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 4567889999999998874 44 5788899999999999988544 3 8889999999999998874 33 577778888
Q ss_pred EEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 183 RLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 183 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
+|++++|.+++ + + .+..+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 111 ~L~l~~n~l~~----------------------~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 111 TLDLTSTQITD----------------------V-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EEECTTSCCCC----------------------C-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCC----------------------c-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 88888777652 1 2 37788999999999999986544 888999999999999998
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCcc
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG 336 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 336 (388)
++ +. +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 165 ~~--~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DL--TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC--GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CC--hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 74 33 7789999999999999987554 7889999999999999996553 7889999999999999876
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1e-21 Score=174.91 Aligned_cols=178 Identities=21% Similarity=0.156 Sum_probs=154.0
Q ss_pred CEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEcc
Q 016534 203 SELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLG 282 (388)
Q Consensus 203 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 282 (388)
++++++++.+.. + |..+. +.++.|++++|.+++..+..+..+++|++|++++|+++++ .+..+..+++|++|+++
T Consensus 17 ~~l~~~~~~l~~-~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 17 KEVDCQGKSLDS-V-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLA 91 (251)
T ss_dssp TEEECTTCCCSS-C-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred eEEecCCCCccc-c-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECC
Confidence 344444444442 2 33333 5899999999999988888899999999999999999984 46678889999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCC
Q 016534 283 FNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCP 362 (388)
Q Consensus 283 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p 362 (388)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|.+++..+..+..+++|+.|++++|+++.+|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999988888999999999999999999777777899999999999999999877778999999999999999999877
Q ss_pred C-CCCCCCCCccccccccCCCCCC
Q 016534 363 V-SSQLCSPSQKSYSVCKQAYGRR 385 (388)
Q Consensus 363 ~-~~~~~~~L~~l~l~~n~~~~~i 385 (388)
+ .+..+++|+.|++++|++....
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHHhCCCCCCEEEeeCCceeCCc
Confidence 5 6889999999999999998763
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=5.6e-25 Score=219.92 Aligned_cols=298 Identities=11% Similarity=0.057 Sum_probs=152.4
Q ss_pred eEEEEeCCCC-CCC-CCcccccCCCCCCEEEccCCcCCcc----CcccccCCCCCCEEeeecCcCCC----CCchhhcCC
Q 016534 85 VTQLTLDPAG-YSG-QLTPLISQLTQLTILDLSDNYFFGP----IPASISSLSNLQMLTLRSNSFSS----SVPDSLTQL 154 (388)
Q Consensus 85 l~~L~l~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l 154 (388)
+++|+++++. +.. .++....++++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 111 1222233566666666666665443 22233455566666666665542 233334455
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcC--------------------------CCCCCCC---CCCCCEE
Q 016534 155 KNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKL--------------------------TGSLPKL---PPNLSEL 205 (388)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l--------------------------~~~~~~~---~~~L~~L 205 (388)
++|++|++++|.+.+ +|..+..+++|++|+++.... .+.+|.. .++|++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 666666666655442 333344444444444432110 0111111 1355566
Q ss_pred EccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEcc----------------------------
Q 016534 206 ALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLS---------------------------- 257 (388)
Q Consensus 206 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~---------------------------- 257 (388)
++++|.+.+......+..+++|++|+++++...+.++..+..+++|++|+++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 6665554433211223444455555444211111222222334445555554
Q ss_pred --------CCCCCCCCCCCCCCC-CCCCCEEEcc----CCcCCCC-----CcccccCCCCCCEEEccCCc--ccccCCcc
Q 016534 258 --------NNTLTRVGISKPVDG-RSDLVAVDLG----FNKIQGY-----LPVNFADYPMLSSLSMRYNR--LRGGIPLE 317 (388)
Q Consensus 258 --------~n~l~~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~p~~ 317 (388)
.|++++. .+..+.. +++|++|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..
T Consensus 379 ~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 379 ELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred cCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 4443331 1111212 4555666654 4445442 11223446666666665432 44444433
Q ss_pred cc-CCCCCcEEeCcCCcCccC-CCccCcCCCCCcEEEcCCCcCCC--CCCCCCCCCCCccccccccCCCCC
Q 016534 318 FS-HKKSLKRLFLDGNFLIGK-APIGFFTGDVPVAGSLGDNCLQG--CPVSSQLCSPSQKSYSVCKQAYGR 384 (388)
Q Consensus 318 ~~-~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~l~l~~n~l~~--~p~~~~~~~~L~~l~l~~n~~~~~ 384 (388)
+. .+++|++|++++|.+++. ++..+..+++|+.|++++|.+++ ++.....+++|+.|++++|++++.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 33 367888888888888763 34455677889999999988762 455556788899999999887764
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.6e-24 Score=216.62 Aligned_cols=179 Identities=11% Similarity=-0.006 Sum_probs=128.8
Q ss_pred CCCCEEEccC-----------CccCcccCccccCCCCccCEEEccCCcCCCcchHHhhc-CCCCCEEEcc----CCCCCC
Q 016534 200 PNLSELALKN-----------NVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFL-LPALQQVNLS----NNTLTR 263 (388)
Q Consensus 200 ~~L~~L~l~~-----------n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~ 263 (388)
++|++|++++ +.+++.........+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 5688888873 44543321222345789999999888888777777766 8999999997 566775
Q ss_pred CC----CCCCCCCCCCCCEEEccCCc--CCCCCccccc-CCCCCCEEEccCCcccc-cCCccccCCCCCcEEeCcCCcCc
Q 016534 264 VG----ISKPVDGRSDLVAVDLGFNK--IQGYLPVNFA-DYPMLSSLSMRYNRLRG-GIPLEFSHKKSLKRLFLDGNFLI 335 (388)
Q Consensus 264 ~~----~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~ 335 (388)
.+ ++..+.++++|++|++++|. +++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++|+++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 31 22224568999999998654 6655544444 48999999999999986 45556678899999999999987
Q ss_pred cCC-CccCcCCCCCcEEEcCCCcCCC--CCCCCCCCCCCccccccc
Q 016534 336 GKA-PIGFFTGDVPVAGSLGDNCLQG--CPVSSQLCSPSQKSYSVC 378 (388)
Q Consensus 336 ~~~-p~~~~~~~~L~~l~l~~n~l~~--~p~~~~~~~~L~~l~l~~ 378 (388)
+.. +..+..+++|+.|++++|+++. +......++.++...+..
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 653 4445678999999999999873 333345667665555444
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.7e-20 Score=175.24 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=161.8
Q ss_pred EEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCc-hhhcCCCCCCE-EEccCC
Q 016534 88 LTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVP-DSLTQLKNLDS-LDLSYN 165 (388)
Q Consensus 88 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~L~~n 165 (388)
++.++++++ .+|..+ .+++++|+|++|.|+...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 445555665 456544 3578888888888886555678888888888888888766555 45778888775 555667
Q ss_pred cCCCCcCccccCCCCCcEEEcccCcCCCCCCCCC---CCCCEEEccCCccCcccCccccCCCC-ccCEEEccCCcCCCcc
Q 016534 166 SLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLP---PNLSELALKNNVLSGVITKNSFDGLT-QLEVIELSENSFTGTL 241 (388)
Q Consensus 166 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~ 241 (388)
.++...|..+..+++|++|++++|++.+..+... .++..+++.++.-...++...+..+. .++.|++++|+++ .+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 8875556777888888888888888875443221 45566777654333334355566654 5788888888887 44
Q ss_pred hHHhhcCCCCCEEEccC-CCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccC
Q 016534 242 EAWFFLLPALQQVNLSN-NTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSH 320 (388)
Q Consensus 242 ~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 320 (388)
+.......+|+++++++ |.++.++ +..+..+++|++||+++|+++..++.. +.+|+.|.+.++.-.+.+| .+..
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTT
T ss_pred ChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cchh
Confidence 54455566788888875 5666532 345677888888888888888755443 4566666666654444777 4778
Q ss_pred CCCCcEEeCcCC
Q 016534 321 KKSLKRLFLDGN 332 (388)
Q Consensus 321 l~~L~~L~Ls~n 332 (388)
+++|+.++++++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 888888888764
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.1e-21 Score=193.48 Aligned_cols=212 Identities=25% Similarity=0.357 Sum_probs=141.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccce-eeCCCCCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCC
Q 016534 54 ASWDFTATDPCALPRRTHFTCGL-LCSSDSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSN 132 (388)
Q Consensus 54 ~~W~~~~~~~C~~~~~~~~~~g~-~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 132 (388)
..|... .++|... ...|.++ .|.. .+++.|+++++++++ +|..+ +++|++|++++|.++ .+| ..+++
T Consensus 34 ~~W~~~-~~~~~~~--~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 34 DKWEKQ-ALPGENR--NEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHTT-CCTTCCH--HHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHhcc-CCccccc--cchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCC
Confidence 346443 5667320 0012566 5753 578999999999886 67655 378999999999887 566 45678
Q ss_pred CCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCcc
Q 016534 133 LQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVL 212 (388)
Q Consensus 133 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~ 212 (388)
|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|.
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--------------- 157 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--------------- 157 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---------------
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---------------
Confidence 8888888888885 666 554 88888888888874 665 56777777777777663 332
Q ss_pred CcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCC-------CEEEccCCc
Q 016534 213 SGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDL-------VAVDLGFNK 285 (388)
Q Consensus 213 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L-------~~L~L~~n~ 285 (388)
.+++|++|++++|.+++ +|. +. ++|++|++++|+++. +|. +.. +| ++|++++|+
T Consensus 158 ----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 158 ----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES--LPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp ----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS--CCC-CC----------CCEEEECCSSC
T ss_pred ----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc--hhh-HHH--hhhcccccceEEecCCCc
Confidence 34556666666666654 343 33 566666666666664 343 322 55 778888888
Q ss_pred CCCCCcccccCCCCCCEEEccCCcccccCCccccCC
Q 016534 286 IQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHK 321 (388)
Q Consensus 286 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 321 (388)
++. +|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 219 l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 219 ITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 775 56666667888888888888887777766553
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.4e-20 Score=162.64 Aligned_cols=180 Identities=23% Similarity=0.175 Sum_probs=123.8
Q ss_pred cEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCC
Q 016534 182 RRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTL 261 (388)
Q Consensus 182 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 261 (388)
+.++.+++.++......++++++|++++|++.+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45667777666444455567777888777777543 55567777777777777777766556667777777777777777
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCcc
Q 016534 262 TRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIG 341 (388)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 341 (388)
++++ +..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+
T Consensus 89 ~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 89 QSLP-NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CccC-HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 7632 4445667777777777777777666666777777777777777776555556777777777777776553
Q ss_pred CcCCCCCcEEEcCCCcCC-CCCCCCCCCCC
Q 016534 342 FFTGDVPVAGSLGDNCLQ-GCPVSSQLCSP 370 (388)
Q Consensus 342 ~~~~~~L~~l~l~~n~l~-~~p~~~~~~~~ 370 (388)
.++.++.++++.|.++ .+|..++.++.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456677777777766 46666665543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=9.6e-21 Score=163.62 Aligned_cols=178 Identities=20% Similarity=0.153 Sum_probs=115.8
Q ss_pred CEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccC
Q 016534 158 DSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234 (388)
Q Consensus 158 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 234 (388)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+.. .++|++|++++|++.+.. +..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCC
Confidence 45666666665 455433 346777777777776444432 266777777777776432 44566777777777777
Q ss_pred CcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccC
Q 016534 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGI 314 (388)
Q Consensus 235 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 314 (388)
|.+++..+..+..+++|++|++++|+++++. +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 163 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 163 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-
Confidence 7777555555667777777777777777632 34456677777777777777766655566777777777777765533
Q ss_pred CccccCCCCCcEEeCcCCcCccCCCccCcCCCC
Q 016534 315 PLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDV 347 (388)
Q Consensus 315 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 347 (388)
+++|++|+++.|.++|.+|..++.++.
T Consensus 164 ------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 ------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 345677777777777777766665543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.1e-20 Score=186.41 Aligned_cols=185 Identities=26% Similarity=0.313 Sum_probs=147.1
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCC
Q 016534 156 NLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSEN 235 (388)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 235 (388)
+|++|++++|.+++ +|..+ .++|++|++++|.++ .+|..+++|++|++++|.+++ + +. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~-i-p~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLST-L-PE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-C-CC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCC-c-ch-hhc--CCCEEECCCC
Confidence 89999999999985 78766 378999999999998 566777899999999999887 5 44 554 8999999999
Q ss_pred cCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCC
Q 016534 236 SFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIP 315 (388)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 315 (388)
.+++ +|. .+++|++|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++ .+|
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 9886 555 67889999999999887 344 57889999999999987 555 55 88999999999988 666
Q ss_pred ccccCCCCC-------cEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCC-CCCCCCC
Q 016534 316 LEFSHKKSL-------KRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQG-CPVSSQL 367 (388)
Q Consensus 316 ~~~~~l~~L-------~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~-~p~~~~~ 367 (388)
. +.. +| +.|+|++|.++ .+|..++.+++|+.|++++|.+++ +|..++.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 6 544 66 88999999887 478888888899999999998873 4544443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=7.6e-21 Score=177.67 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=162.9
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCc-cccCCCCCcE-EEcc
Q 016534 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPK-NTFLMSSLRR-LDLS 187 (388)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~-L~l~ 187 (388)
++++.++++++ .+|..+. +++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+|. .+..++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888887 5676553 5799999999999955556799999999999999998767765 5677888765 5667
Q ss_pred cCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccC-CcCCCcchHHhhcCC-CCCEEEccCCCCC
Q 016534 188 YNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE-NSFTGTLEAWFFLLP-ALQQVNLSNNTLT 262 (388)
Q Consensus 188 ~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 262 (388)
+|++....|.. .++|++|++++|++.+.. +..+....++..+++.+ +.+....+..+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78887544433 367888888888877543 44455556677777755 445544444455543 5777888888887
Q ss_pred CCCCCCCCCCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCcc
Q 016534 263 RVGISKPVDGRSDLVAVDLGF-NKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIG 341 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 341 (388)
. ++.......+|+++++++ |.++...+..|..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+| .
T Consensus 168 ~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 168 E--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp E--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-C
T ss_pred C--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-C
Confidence 5 344444556777888764 5565555556777888888888888887 44432 24456666666555445566 3
Q ss_pred CcCCCCCcEEEcCCC
Q 016534 342 FFTGDVPVAGSLGDN 356 (388)
Q Consensus 342 ~~~~~~L~~l~l~~n 356 (388)
+..+++|+.++++++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 667778888887654
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=157.03 Aligned_cols=156 Identities=26% Similarity=0.246 Sum_probs=111.9
Q ss_pred EEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 183 RLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 183 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
.+++++|.++.....++..+++|++++|++.+..+...+..+++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 44555554443222333445566666666655433445777888888888888888776677888888888888888887
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCC
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP 339 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 339 (388)
++ .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++....+
T Consensus 95 ~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 95 NV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 74 24557778888888888888888777778888888888888888887778888888888888888888775443
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.8e-19 Score=163.85 Aligned_cols=185 Identities=23% Similarity=0.269 Sum_probs=132.1
Q ss_pred EeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCC
Q 016534 89 TLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLS 168 (388)
Q Consensus 89 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 168 (388)
.+....+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 34444444322 245677888888888877643 3 47778888888888888875433 778888888888888876
Q ss_pred CCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcC
Q 016534 169 GSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLL 248 (388)
Q Consensus 169 ~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 248 (388)
+ ++ .+..+++|++|++++|.+.+ ...+..+++|++|++++|.+++. ..+..+
T Consensus 104 ~-~~-~l~~l~~L~~L~L~~n~i~~------------------------~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l 155 (291)
T 1h6t_A 104 D-LS-SLKDLKKLKSLSLEHNGISD------------------------INGLVHLPQLESLYLGNNKITDI--TVLSRL 155 (291)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCC------------------------CGGGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred C-Ch-hhccCCCCCEEECCCCcCCC------------------------ChhhcCCCCCCEEEccCCcCCcc--hhhccC
Confidence 3 33 36677777777777776652 12456678888888888888754 567788
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccc
Q 016534 249 PALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRG 312 (388)
Q Consensus 249 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 312 (388)
++|++|++++|+++++. . +..+++|++|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 156 ~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCEEEccCCccccch--h-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88888888888888742 2 67788888888888888764 3 47778888888888888774
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=9e-23 Score=203.96 Aligned_cols=297 Identities=16% Similarity=0.086 Sum_probs=150.3
Q ss_pred CceEEEEeCCCCCCCCCccccc-CCCCCCEEEccCC-cCCcc-CcccccCCCCCCEEeeecCcCCCCCchhhc----CCC
Q 016534 83 TRVTQLTLDPAGYSGQLTPLIS-QLTQLTILDLSDN-YFFGP-IPASISSLSNLQMLTLRSNSFSSSVPDSLT----QLK 155 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l~ 155 (388)
+++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677777777776655554454 5667777777766 44332 333334566666777666665544333332 445
Q ss_pred CCCEEEccCCc--CCC-CcCccccCCCCCcEEEcccCc------------------------------------------
Q 016534 156 NLDSLDLSYNS--LSG-SLPKNTFLMSSLRRLDLSYNK------------------------------------------ 190 (388)
Q Consensus 156 ~L~~L~L~~n~--l~~-~~p~~l~~~~~L~~L~l~~n~------------------------------------------ 190 (388)
+|++|++++|. +.. .++..+..+++|++|++++|.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 66666666554 110 011111234555555555441
Q ss_pred --------CC----CCCCC---CCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCC-cchHHhhcCCCCCEE
Q 016534 191 --------LT----GSLPK---LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTG-TLEAWFFLLPALQQV 254 (388)
Q Consensus 191 --------l~----~~~~~---~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 254 (388)
+. +.++. ..++|++|++++|.+.+......+..+++|++|++++| ++. .++.....+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 00 00111 12567777777777554321223456666777777665 321 122223345666666
Q ss_pred EccC---------CCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccc--------------------------------
Q 016534 255 NLSN---------NTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVN-------------------------------- 293 (388)
Q Consensus 255 ~L~~---------n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------------------- 293 (388)
++++ +.+++..+......+++|++|++..|.+++.....
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 6632 22222110000011334444444444443322222
Q ss_pred ----ccCCCCCCEEEccCCcccccCCccccC-CCCCcEEeCcCCcCccCCCccC-cCCCCCcEEEcCCCcCCC--CCCCC
Q 016534 294 ----FADYPMLSSLSMRYNRLRGGIPLEFSH-KKSLKRLFLDGNFLIGKAPIGF-FTGDVPVAGSLGDNCLQG--CPVSS 365 (388)
Q Consensus 294 ----l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~l~l~~n~l~~--~p~~~ 365 (388)
+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++ +....
T Consensus 424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence 33445555555544 344333333333 6667777777777665544444 456777777777777752 23334
Q ss_pred CCCCCCccccccccCC
Q 016534 366 QLCSPSQKSYSVCKQA 381 (388)
Q Consensus 366 ~~~~~L~~l~l~~n~~ 381 (388)
..+++|+.|++++|.+
T Consensus 503 ~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 503 SKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGSSEEEEESSCC
T ss_pred HhCCCCCEEeeeCCCC
Confidence 5567777777777765
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.4e-19 Score=163.02 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=128.0
Q ss_pred cCCCCCcEEEcccCcCCCCCCCC--CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCE
Q 016534 176 FLMSSLRRLDLSYNKLTGSLPKL--PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQ 253 (388)
Q Consensus 176 ~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 253 (388)
..+++|++|++++|.+.. ++.+ .++|++|++++|++.+.. + +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~~~~~l~~L~~L~L~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIK-P--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-ChhHhcCCCCCEEEccCCccCCCc-c--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 457889999999998863 3333 377888888888887643 2 7788888888888888875 33 3777888888
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCc
Q 016534 254 VNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNF 333 (388)
Q Consensus 254 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 333 (388)
|++++|+++++ ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 88888888763 2466678888888888888764 567778888888888888875544 7778888888888888
Q ss_pred CccCCCccCcCCCCCcEEEcCCCcCCCCC
Q 016534 334 LIGKAPIGFFTGDVPVAGSLGDNCLQGCP 362 (388)
Q Consensus 334 l~~~~p~~~~~~~~L~~l~l~~n~l~~~p 362 (388)
+++. + .+..+++|+.|++++|.++..|
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 7763 3 4777788888888888776544
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=156.40 Aligned_cols=153 Identities=24% Similarity=0.227 Sum_probs=123.0
Q ss_pred CCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcch-HHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEE
Q 016534 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLE-AWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVD 280 (388)
Q Consensus 202 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 280 (388)
-+.+++++|.+.. + |..+. ..+++|++++|.+++..+ ..+..+++|++|++++|+++++. +..+..+++|++|+
T Consensus 13 ~~~l~~s~n~l~~-i-P~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLNK-I-PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCSS-C-CSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCccc-C-ccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEE
Confidence 3578888888775 3 44332 356788888888886644 45778888888898888888743 55677888888888
Q ss_pred ccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 281 LGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 281 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+++|++++..+..|..+++|++|++++|++++..|..+..+++|+.|+|++|.+++..|..+..+++|+.+++++|.+.
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8888888877777888888888888888888887888888888888888888888888888888888888888888876
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=3.3e-19 Score=177.48 Aligned_cols=172 Identities=24% Similarity=0.293 Sum_probs=93.5
Q ss_pred ccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCc
Q 016534 103 ISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLR 182 (388)
Q Consensus 103 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 182 (388)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+.+ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4556667777777776653 23 46667777777777777765433 6677777777777777663 33 456666666
Q ss_pred EEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 183 RLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 183 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
.|++++|.+.+ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|+|++|+++
T Consensus 113 ~L~Ls~N~l~~-l~-----------------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 113 SLSLEHNGISD-IN-----------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp EEECTTSCCCC-CG-----------------------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred EEEecCCCCCC-Cc-----------------------cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 66666666552 11 233444455555555544432 33444445555555555544
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
++. | +..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.
T Consensus 167 ~~~-~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 167 DIV-P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCG-G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred Cch-h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 421 1 44445555555555555442 23444455555555555444
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=9.5e-19 Score=152.43 Aligned_cols=152 Identities=25% Similarity=0.270 Sum_probs=118.7
Q ss_pred EEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 183 RLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 183 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
.++.+++.++.....++++++.|++++|++.+.. +..+..+++|++|++++|.+++..|..|..+++|++|++++|+++
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4444444444222233455666666666666433 567888899999999999998877888999999999999999998
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCcc
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG 336 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 336 (388)
.++ +..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 94 ~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ELP-KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccC-HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 743 4456778999999999999998888888889999999999999997777778888999999999998764
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.6e-19 Score=178.19 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=155.9
Q ss_pred CCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEccc
Q 016534 109 LTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSY 188 (388)
Q Consensus 109 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~ 188 (388)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445566666654433 4677889999999998874 44 58889999999999998885443 77888888888888
Q ss_pred CcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCC
Q 016534 189 NKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISK 268 (388)
Q Consensus 189 n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 268 (388)
|.+.+ ...+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|+++++ .
T Consensus 97 N~l~~------------------------l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~ 147 (605)
T 1m9s_A 97 NKIKD------------------------LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---T 147 (605)
T ss_dssp SCCCC------------------------CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---G
T ss_pred CCCCC------------------------ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---h
Confidence 87752 12577889999999999999863 4588999999999999999984 4
Q ss_pred CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCC
Q 016534 269 PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP 339 (388)
Q Consensus 269 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 339 (388)
.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++...
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCcc
Confidence 67789999999999999998766 8899999999999999996 44 68899999999999999987533
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.8e-19 Score=154.31 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=127.5
Q ss_pred CCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 016534 222 DGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLS 301 (388)
Q Consensus 222 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 301 (388)
..+++|++|++++|.++ .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 55678889999999887 555 58888899999999997765 23577789999999999999887788888899999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCCCCCCCCCccccccccCC
Q 016534 302 SLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVSSQLCSPSQKSYSVCKQA 381 (388)
Q Consensus 302 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~~~~~~~L~~l~l~~n~~ 381 (388)
+|++++|++++..|..+..+++|++|++++|+..+.+| .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 99999999998888888899999999999998444455 6888899999999999998877 688899999999999987
Q ss_pred CC
Q 016534 382 YG 383 (388)
Q Consensus 382 ~~ 383 (388)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 65
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=8.8e-22 Score=196.79 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=107.7
Q ss_pred CCccCEEEccCCcCCCcchHHhh-cCCCCCEEEcc--C----CCCCCCC----CCCCCCCCCCCCEEEccCCcCCCCCcc
Q 016534 224 LTQLEVIELSENSFTGTLEAWFF-LLPALQQVNLS--N----NTLTRVG----ISKPVDGRSDLVAVDLGFNKIQGYLPV 292 (388)
Q Consensus 224 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~ 292 (388)
+++|++|+++.|.+++.....+. .+++|+.|+++ + +.+++.+ ++..+..+++|++|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 56666676666666655555554 57889999988 4 4555321 111244578999999977 67665555
Q ss_pred cccC-CCCCCEEEccCCcccccCCccc-cCCCCCcEEeCcCCcCccCCCc-cCcCCCCCcEEEcCCCcCC--CCCCCCCC
Q 016534 293 NFAD-YPMLSSLSMRYNRLRGGIPLEF-SHKKSLKRLFLDGNFLIGKAPI-GFFTGDVPVAGSLGDNCLQ--GCPVSSQL 367 (388)
Q Consensus 293 ~l~~-l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~l~l~~n~l~--~~p~~~~~ 367 (388)
.+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|++++..+. .+..+++|+.|++++|.++ ++......
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 5554 8999999999999987665555 6689999999999999765544 3445799999999999885 12211245
Q ss_pred CCCCccccccccC
Q 016534 368 CSPSQKSYSVCKQ 380 (388)
Q Consensus 368 ~~~L~~l~l~~n~ 380 (388)
++.++...+..+.
T Consensus 530 lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 530 MPKLNVEVIDERG 542 (594)
T ss_dssp CTTEEEEEECSSS
T ss_pred CCCCEEEEecCCC
Confidence 6666665555543
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=7.3e-21 Score=193.81 Aligned_cols=266 Identities=18% Similarity=0.069 Sum_probs=107.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCceEEEEeCCCCCCCCCcccccCC
Q 016534 27 TSPQDISALKAFKASIKPSSIQPWSCLASWDFTATDPCALPRRTHFTCGLLCSSDSTRVTQLTLDPAGYSGQLTPLISQL 106 (388)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~~~~C~~~~~~~~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l 106 (388)
....+++++.++..... ...|.....|.......+.| .+..++. ++++.|+|.++.+... +.
T Consensus 129 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~s~--~~~~~l~L~~n~~~~~-~~----- 190 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLT---DSKTAKKQQPTGDSTPSGTA-------TNSAVST--PLTPKIELFANGKDEA-NQ----- 190 (727)
T ss_dssp ---CCCHHHHHHHHHHH---HHHTTC------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcc---cccCcccCCCcCCCCccccC-------CCceecC--CccceEEeeCCCCCcc-hh-----
Confidence 45567788998887762 12333345564432333444 4555543 6789999988887652 22
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEc
Q 016534 107 TQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDL 186 (388)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l 186 (388)
..|+.++|+.+.+.+ ++++.|.+. ..+..+..+++|++|+|++|.+. .+|..+..+++|++|++
T Consensus 191 ~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~L 254 (727)
T 4b8c_D 191 ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYL 254 (727)
T ss_dssp ----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBC
T ss_pred hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEe
Confidence 234555565555432 223334444 44556666677777777777766 56666666666666666
Q ss_pred ccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCC
Q 016534 187 SYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGI 266 (388)
Q Consensus 187 ~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 266 (388)
++|.++ .+ |..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.++. +
T Consensus 255 s~N~l~----------------------~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--l 308 (727)
T 4b8c_D 255 NGNSLT----------------------EL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--L 308 (727)
T ss_dssp TTSCCS----------------------CC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--C
T ss_pred eCCcCc----------------------cc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--c
Confidence 666554 22 445666777777777777777 567777777777777777777764 4
Q ss_pred CCCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCEEEccCCcccccCCccccCCCCCcEEeCcCC--------cCccC
Q 016534 267 SKPVDGRSDLVAVDLGFNKIQGYLPVNFADYP-MLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGN--------FLIGK 337 (388)
Q Consensus 267 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n--------~l~~~ 337 (388)
|..+..+++|++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|..+ +.|+++.| .+.+.
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~ 382 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQS 382 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCCcccc
Confidence 66677777888888888888777766654322 12236677777777777543 44555555 22222
Q ss_pred CCccCcCCCCCcEEEcCCCcC
Q 016534 338 APIGFFTGDVPVAGSLGDNCL 358 (388)
Q Consensus 338 ~p~~~~~~~~L~~l~l~~n~l 358 (388)
.+..+..+..+....++.|.+
T Consensus 383 ~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 383 TEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -------------------CC
T ss_pred ccchhhcccccceeeeecccc
Confidence 233333444445555555554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.3e-19 Score=166.45 Aligned_cols=173 Identities=25% Similarity=0.252 Sum_probs=84.0
Q ss_pred CEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCC----CCCCCCEEEccCCccCcccCccccCCCCccCEEEcc
Q 016534 158 DSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPK----LPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELS 233 (388)
Q Consensus 158 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~ 233 (388)
++++++++.++ .+|..+. +.++.|++++|++++..+. ..++|++|++++|++.+.. +..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECC
Confidence 56667666666 4555432 3466666666666543322 1244555555555554332 3345555555555555
Q ss_pred CCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc---cCCCCCCEEEccCCcc
Q 016534 234 ENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNF---ADYPMLSSLSMRYNRL 310 (388)
Q Consensus 234 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l 310 (388)
+|.+++..+..|..+++|++|+|++|+++.+ .+..+..+++|++|+|++|++++..+..+ ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEE-CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 5555544444445555555555555555542 23344445555555555555554333333 3345555555555555
Q ss_pred cccCCccccCCCC--CcEEeCcCCcCc
Q 016534 311 RGGIPLEFSHKKS--LKRLFLDGNFLI 335 (388)
Q Consensus 311 ~~~~p~~~~~l~~--L~~L~Ls~n~l~ 335 (388)
++..+..+..++. ++.|+|++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5333333444433 244555555443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.3e-18 Score=149.96 Aligned_cols=152 Identities=20% Similarity=0.142 Sum_probs=130.2
Q ss_pred CEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEcc
Q 016534 203 SELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLG 282 (388)
Q Consensus 203 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 282 (388)
+.++++++++... |..+. +++++|++++|.+++..+..|..+++|++|++++|+++++ .|..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~i--P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEI--PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSC--CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcC--CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECC
Confidence 5678888877743 43333 6899999999999877777888899999999999999874 47788889999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 283 FNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 283 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|+|++|.+++..+..+..+++|+.+++++|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999877777888999999999999999888888999999999999999998877778888999999999999875
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.2e-18 Score=148.68 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=104.3
Q ss_pred CcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCC
Q 016534 181 LRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNT 260 (388)
Q Consensus 181 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 260 (388)
-+.++.+++.+......++++|++|++++|.+.+.. +..+..+++|++|++++|.++...+..+..+++|++|++++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456777777776443345567777777777777654 5566777777777777777765555566677777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCC
Q 016534 261 LTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKA 338 (388)
Q Consensus 261 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 338 (388)
++++. +..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....
T Consensus 100 l~~l~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 100 LTVLP-SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCccC-hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 77632 444566777777777777776 35566667777777777777777555556667777777777777766543
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=6.3e-18 Score=148.18 Aligned_cols=148 Identities=26% Similarity=0.289 Sum_probs=67.4
Q ss_pred CEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCC---CCCCCEEEccCCccCcccCccccCCCCccCEEEccC
Q 016534 158 DSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKL---PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSE 234 (388)
Q Consensus 158 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 234 (388)
+.++.+++.++ .+|..+. ++|++|++++|.+++..+.. .++|++|++++|++... ++..+..+++|++|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCC
Confidence 34444444443 3443322 44555555555444433321 14445555555544322 133344445555555555
Q ss_pred CcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 235 NSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 235 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
|.+++..+..+..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55444434444444455555555555442 3344444455555555555554444444444445555555555444
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=163.43 Aligned_cols=177 Identities=28% Similarity=0.316 Sum_probs=147.2
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhc-CCCCCCEEEccCCcCCCCcCccccCCCCCcEEEccc
Q 016534 110 TILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLT-QLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSY 188 (388)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~ 188 (388)
+.++++++.++ .+|..+. +.+++|+|++|.+++..+..|. ++++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999887 4666554 4689999999999977777777 899999999999999966667788888899888888
Q ss_pred CcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCC
Q 016534 189 NKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISK 268 (388)
Q Consensus 189 n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 268 (388)
|++.+ +++..|..+++|++|++++|.+++..+..|..+++|++|+|++|+++.++ +.
T Consensus 98 N~l~~----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~ 154 (361)
T 2xot_A 98 NHLHT----------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VE 154 (361)
T ss_dssp SCCCE----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GG
T ss_pred CcCCc----------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HH
Confidence 87762 32556888999999999999999888899999999999999999999843 22
Q ss_pred CC---CCCCCCCEEEccCCcCCCCCcccccCCCC--CCEEEccCCcccc
Q 016534 269 PV---DGRSDLVAVDLGFNKIQGYLPVNFADYPM--LSSLSMRYNRLRG 312 (388)
Q Consensus 269 ~~---~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~ 312 (388)
.+ ..+++|++|+|++|++++..+..+..++. ++.|++++|.+..
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 33 46899999999999999877777887776 4899999998874
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=8.9e-22 Score=194.82 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=82.3
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeC
Q 016534 250 ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFL 329 (388)
Q Consensus 250 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 329 (388)
.|+.|++++|++++ +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 46677777777765 344 666777777777777777 456677777777777777777774 55 6677777777777
Q ss_pred cCCcCccCC-CccCcCCCCCcEEEcCCCcCCCCCCCCCC----CCCCcccc
Q 016534 330 DGNFLIGKA-PIGFFTGDVPVAGSLGDNCLQGCPVSSQL----CSPSQKSY 375 (388)
Q Consensus 330 s~n~l~~~~-p~~~~~~~~L~~l~l~~n~l~~~p~~~~~----~~~L~~l~ 375 (388)
++|.+++.. |..+..+++|+.|++++|.++++|+.+.. +++|+.|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777665 77777777777777777777766554432 56666664
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=2.3e-21 Score=191.84 Aligned_cols=204 Identities=19% Similarity=0.137 Sum_probs=134.3
Q ss_pred cCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCc-------------CCCCcCccccCCCCCcEEE-cccCcCCC
Q 016534 128 SSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNS-------------LSGSLPKNTFLMSSLRRLD-LSYNKLTG 193 (388)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~~~~L~~L~-l~~n~l~~ 193 (388)
..+++|+.|++++|.+. .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34555666666666665 556666666666666654443 3445666666777777777 5555442
Q ss_pred CCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCC
Q 016534 194 SLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGR 273 (388)
Q Consensus 194 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 273 (388)
.|+.+.+.+|.+.... + ..|+.|++++|.+++ +|. +..+++|+.|++++|+++. +|..++.+
T Consensus 424 -------~L~~l~l~~n~i~~l~-~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l 485 (567)
T 1dce_A 424 -------DLRSKFLLENSVLKME-Y------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPALAAL 485 (567)
T ss_dssp -------HHHHHHHHHHHHHHHH-H------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGGGGGC
T ss_pred -------hhhhhhhhcccccccC-c------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc--cchhhhcC
Confidence 3444445555544321 1 247778888887775 454 7777788888888888774 56677778
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEeCcCCcCccCCCcc---CcCCCCCc
Q 016534 274 SDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGI-PLEFSHKKSLKRLFLDGNFLIGKAPIG---FFTGDVPV 349 (388)
Q Consensus 274 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~~~~L~ 349 (388)
++|++|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|+|++|++++..|.. +..+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 888888888888876 45 6777888888888888888665 777888888888888888877654422 22357777
Q ss_pred EEEc
Q 016534 350 AGSL 353 (388)
Q Consensus 350 ~l~l 353 (388)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 7754
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=142.93 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=108.3
Q ss_pred ccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 016534 220 SFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPM 299 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 299 (388)
.+..+++|++|++++|.++. +..+..+++|++|++++|++++ ..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence 46677889999999886652 2467888999999999999887 34667888999999999999999877888889999
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCC
Q 016534 300 LSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQG 360 (388)
Q Consensus 300 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~ 360 (388)
|++|++++|...+.+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++
T Consensus 138 L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9999999998333666 688889999999999998763 3 67788999999999998763
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.9e-18 Score=152.73 Aligned_cols=151 Identities=24% Similarity=0.268 Sum_probs=71.4
Q ss_pred ccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEE
Q 016534 127 ISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELA 206 (388)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 206 (388)
+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++..+...++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEE
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCccccCcccEEE
Confidence 334444444444444444 222 34444455555555554442 222 44445555555555544421100002333333
Q ss_pred ccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 016534 207 LKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKI 286 (388)
Q Consensus 207 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 286 (388)
+++|++.+. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|.+
T Consensus 113 L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 113 LDNNELRDT---DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCSSCCSBS---GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEE
T ss_pred ccCCccCCC---hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcc
Confidence 333333321 1355566666666666666543 2 455566666666666666553 3344555566666665555
Q ss_pred CCC
Q 016534 287 QGY 289 (388)
Q Consensus 287 ~~~ 289 (388)
++.
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=7.4e-18 Score=150.88 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred CCCCcEEEcccCcCCCCCCCC--CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEE
Q 016534 178 MSSLRRLDLSYNKLTGSLPKL--PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVN 255 (388)
Q Consensus 178 ~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 255 (388)
+.++..++++++.+++.. .+ .++|++|++++|.+.. + + .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-L-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-C-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-c-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455667778888776433 22 2789999999998875 3 3 67888999999999999986554 88899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCc
Q 016534 256 LSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLI 335 (388)
Q Consensus 256 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 335 (388)
+++|+++++ +.. .. ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 92 L~~N~l~~l--~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKNL--NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSCC--TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCCc--Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999874 332 23 8999999999999874 3588899999999999999854 4 6888999999999999998
Q ss_pred cCCCccCcCCCCCcEEEcCCCcCCCCCC
Q 016534 336 GKAPIGFFTGDVPVAGSLGDNCLQGCPV 363 (388)
Q Consensus 336 ~~~p~~~~~~~~L~~l~l~~n~l~~~p~ 363 (388)
+. ..+..+++|+.|++++|.+...|.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 76 668888999999999998876553
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3.4e-17 Score=136.23 Aligned_cols=137 Identities=20% Similarity=0.081 Sum_probs=91.7
Q ss_pred CCccCEEEccCCcCC-CcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 016534 224 LTQLEVIELSENSFT-GTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSS 302 (388)
Q Consensus 224 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 302 (388)
.++|++|++++|.++ +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777766 55666666667777777777776653 45566777777777777777666666666777777
Q ss_pred EEccCCcccccC-CccccCCCCCcEEeCcCCcCccCCC---ccCcCCCCCcEEEcCCCcCCCCCC
Q 016534 303 LSMRYNRLRGGI-PLEFSHKKSLKRLFLDGNFLIGKAP---IGFFTGDVPVAGSLGDNCLQGCPV 363 (388)
Q Consensus 303 L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~~~~L~~l~l~~n~l~~~p~ 363 (388)
|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+..+|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 777777776432 2566677777777777777765544 356666777777777777666654
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=9.2e-17 Score=136.76 Aligned_cols=132 Identities=23% Similarity=0.283 Sum_probs=107.4
Q ss_pred CEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchH-HhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEc
Q 016534 203 SELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA-WFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDL 281 (388)
Q Consensus 203 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 281 (388)
++++++++++.. + |..+. .++++|++++|.+++..+. .+..+++|++|++++|+++++ .|..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~-i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE-I-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS-C-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCc-C-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEEC
Confidence 678888888853 4 44343 3888999999988866554 478888999999999998884 4777888889999999
Q ss_pred cCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCC
Q 016534 282 GFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAP 339 (388)
Q Consensus 282 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 339 (388)
++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999988888788888999999999999988888888888899999999998887654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=6.5e-17 Score=149.65 Aligned_cols=279 Identities=15% Similarity=0.088 Sum_probs=136.2
Q ss_pred CceEEEEeCCCCCCCCCcccccC-CCCCCEEEccCCcCC--ccCcccccCCCCCCEEeeecCcCCCCCchhhcC------
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQ-LTQLTILDLSDNYFF--GPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQ------ 153 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------ 153 (388)
.++++|.++++ +.+.--..+.. +++|++|||++|.+. ...... ++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhcccccccc
Confidence 45777777653 11111112333 788999999998876 211111 122333333333222 234444
Q ss_pred --CCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCC---CCCCEEEccCCcc---CcccCccccCCCC
Q 016534 154 --LKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLP---PNLSELALKNNVL---SGVITKNSFDGLT 225 (388)
Q Consensus 154 --l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~~---~~~~~~~~l~~l~ 225 (388)
+++|+++++.. .++..-+.+|..+++|+.++++.|.+....+..+ .++..+....+.. ...+....|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 67777777766 5553334456666777777777666542222111 2222232222110 0112233454555
Q ss_pred ccC-EEEccCCcCCCcchHHhh----cCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 016534 226 QLE-VIELSENSFTGTLEAWFF----LLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPML 300 (388)
Q Consensus 226 ~L~-~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 300 (388)
.|+ .+.+... +.++..+. ...+++.+.+.++- ....+......+++|+.+++++|+++......|..+.+|
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 555 3444322 12232221 12344445444431 110100001124566666666666665555556666666
Q ss_pred CEEEccCCcccccCCccccCCCCCc-EEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCC-CCCCCCCCcccc
Q 016534 301 SSLSMRYNRLRGGIPLEFSHKKSLK-RLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPV-SSQLCSPSQKSY 375 (388)
Q Consensus 301 ~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~-~~~~~~~L~~l~ 375 (388)
+.+++.+| ++...+.+|..+++|+ .+++.+ .++...+..|..|++|+.+++++|.++.++. .+.+|++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666665 5544445566666666 666665 4444445556666666666666666665543 456666666554
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.1e-16 Score=133.51 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=114.7
Q ss_pred cCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 016534 227 LEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMR 306 (388)
Q Consensus 227 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 306 (388)
-+.+++++|+++ .+|..+. .++++|++++|+++++.....+..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999999996 5665443 3899999999999885322347889999999999999999889999999999999999
Q ss_pred CCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 307 YNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 307 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+|++++..+..+..+++|++|+|++|++++..|..+..+++|+.+++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999888888999999999999999999999999999999999999999987
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.3e-16 Score=132.65 Aligned_cols=135 Identities=16% Similarity=0.055 Sum_probs=120.4
Q ss_pred cCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcE
Q 016534 247 LLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKR 326 (388)
Q Consensus 247 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 326 (388)
..++|++|++++|+++...+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999998325687788899999999999999986 78889999999999999999888988888999999
Q ss_pred EeCcCCcCccCC-CccCcCCCCCcEEEcCCCcCCCCCC----CCCCCCCCccccccccCCCC
Q 016534 327 LFLDGNFLIGKA-PIGFFTGDVPVAGSLGDNCLQGCPV----SSQLCSPSQKSYSVCKQAYG 383 (388)
Q Consensus 327 L~Ls~n~l~~~~-p~~~~~~~~L~~l~l~~n~l~~~p~----~~~~~~~L~~l~l~~n~~~~ 383 (388)
|++++|.+++.. +..+..+++|+.|++++|.++++|. .+..+++|+.|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998743 3788899999999999999999887 78999999999999998654
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.5e-17 Score=167.83 Aligned_cols=180 Identities=22% Similarity=0.208 Sum_probs=111.3
Q ss_pred CcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCC
Q 016534 99 LTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLM 178 (388)
Q Consensus 99 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~ 178 (388)
.+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4667888999999999999987 67777778999999999999998 88888999999999999999998 789888889
Q ss_pred CCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCC-CCEEEcc
Q 016534 179 SSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPA-LQQVNLS 257 (388)
Q Consensus 179 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~ 257 (388)
++|++|++++|.++ .+ |..|+.+++|++|+|++|.+++.+|..+..... +..++++
T Consensus 293 ~~L~~L~L~~N~l~----------------------~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~ 349 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT----------------------TL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR 349 (727)
T ss_dssp TTCSEEECCSSCCC----------------------CC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCC----------------------cc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhc
Confidence 99999999888775 23 445777888888888888888777777654322 2236677
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEccCC--------cCCCCCcccccCCCCCCEEEccCCccc
Q 016534 258 NNTLTRVGISKPVDGRSDLVAVDLGFN--------KIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 258 ~n~l~~~~~~~~~~~~~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
+|.+++ .+|. .|+.|+++.| .+.+..+..+..+..++...+++|-+.
T Consensus 350 ~N~l~~-~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 350 DNRPEI-PLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HCCCCC-CCCC------C-----------------------------------------CCC
T ss_pred cCcccC-cCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 777776 3443 3455556555 333333334445555666666666553
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=8.6e-17 Score=131.00 Aligned_cols=128 Identities=18% Similarity=0.088 Sum_probs=79.1
Q ss_pred CCccCEEEccCCcCC-CcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 016534 224 LTQLEVIELSENSFT-GTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSS 302 (388)
Q Consensus 224 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 302 (388)
.+++++|++++|.++ +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 356667777776665 55566566666666666666666653 34555666666666666666655555555666666
Q ss_pred EEccCCccccc-CCccccCCCCCcEEeCcCCcCccCCC---ccCcCCCCCcEEEcC
Q 016534 303 LSMRYNRLRGG-IPLEFSHKKSLKRLFLDGNFLIGKAP---IGFFTGDVPVAGSLG 354 (388)
Q Consensus 303 L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~~~~L~~l~l~ 354 (388)
|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666642 23556666666666666666655444 345555666666554
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4.5e-17 Score=150.72 Aligned_cols=253 Identities=14% Similarity=0.073 Sum_probs=154.8
Q ss_pred CCCccccc--CCCCCCEEEccCCcCCccCcccccC-CCCCCEEeeecCcCC--CCCchhhcCCCCCCEEEccCCcCCCCc
Q 016534 97 GQLTPLIS--QLTQLTILDLSDNYFFGPIPASISS-LSNLQMLTLRSNSFS--SSVPDSLTQLKNLDSLDLSYNSLSGSL 171 (388)
Q Consensus 97 ~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~ 171 (388)
|.++..+. .+.++++|.++++ +...-...+.. +++|++|+|++|.+. ...+. .++.++.+.+..+.+.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~--- 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP--- 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---
Confidence 33444443 3678899999875 22211122333 788999999999987 22221 2222445555555322
Q ss_pred CccccC--------CCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchH
Q 016534 172 PKNTFL--------MSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEA 243 (388)
Q Consensus 172 p~~l~~--------~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 243 (388)
+..+.. +++|+.+++.. .++ .++..+|.+|++|+.++++.|.+....+.
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~----------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~ 142 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIK----------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPE 142 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCC----------------------EECTTTTTTCTTCCEEEBCCSSCCEECTT
T ss_pred HHHhcccccccccccCCCcEEECCc-ccc----------------------chhHHHhhcCcccceEEcCCCCccccchh
Confidence 234445 88999998887 554 22244555556666666665555544444
Q ss_pred HhhcCCCCCEEEccCCC----CCCCCCCCCCCC--------------------------CCCCCEEEccCCcCCCCCccc
Q 016534 244 WFFLLPALQQVNLSNNT----LTRVGISKPVDG--------------------------RSDLVAVDLGFNKIQGYLPVN 293 (388)
Q Consensus 244 ~~~~l~~L~~L~L~~n~----l~~~~~~~~~~~--------------------------~~~L~~L~L~~n~l~~~~~~~ 293 (388)
.|..+.++..+....+. ...+. ...+.. ..++..+.+.++-. ......
T Consensus 143 aF~~~~~l~~l~~~~~~~~~~~~~i~-~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~ 220 (329)
T 3sb4_A 143 ALADSVTAIFIPLGSSDAYRFKNRWE-HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKL 220 (329)
T ss_dssp SSCTTTCEEEECTTCTHHHHTSTTTT-TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHH
T ss_pred hhcCCCceEEecCcchhhhhcccccc-ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHH
Confidence 45554444444443321 01100 111212 23344444443311 111111
Q ss_pred c-cCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCc-EEEcCCCcCCCCC-CCCCCCCC
Q 016534 294 F-ADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPV-AGSLGDNCLQGCP-VSSQLCSP 370 (388)
Q Consensus 294 l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~-~l~l~~n~l~~~p-~~~~~~~~ 370 (388)
+ ..+++|+.+++++|+++...+..|..+++|+.+++.+| ++...+..|..+++|+ .+++.+ .++.++ ..+.+|++
T Consensus 221 l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 2 23799999999999999777778999999999999998 6666667888999999 999998 777765 66899999
Q ss_pred CccccccccCCCC
Q 016534 371 SQKSYSVCKQAYG 383 (388)
Q Consensus 371 L~~l~l~~n~~~~ 383 (388)
|+.++++.|.+..
T Consensus 299 L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 299 LRYVLATGDKITT 311 (329)
T ss_dssp EEEEEECSSCCCE
T ss_pred CCEEEeCCCccCc
Confidence 9999998887653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.5e-16 Score=129.54 Aligned_cols=129 Identities=14% Similarity=0.035 Sum_probs=115.2
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEE
Q 016534 248 LPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRL 327 (388)
Q Consensus 248 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 327 (388)
.++++.|++++|.++...+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467999999999998325788888899999999999999986 778899999999999999998889888889999999
Q ss_pred eCcCCcCccC-CCccCcCCCCCcEEEcCCCcCCCCCC----CCCCCCCCccccccc
Q 016534 328 FLDGNFLIGK-APIGFFTGDVPVAGSLGDNCLQGCPV----SSQLCSPSQKSYSVC 378 (388)
Q Consensus 328 ~Ls~n~l~~~-~p~~~~~~~~L~~l~l~~n~l~~~p~----~~~~~~~L~~l~l~~ 378 (388)
++++|.+++. .+..+..+++|+.+++++|.++++|+ .+..+++|+.|+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999874 45788999999999999999998887 688999999999863
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-15 Score=126.52 Aligned_cols=131 Identities=21% Similarity=0.114 Sum_probs=99.4
Q ss_pred ccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 016534 226 QLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSM 305 (388)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 305 (388)
..+.+++++++++ .+|..+ .++|++|++++|+++++. +..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3567888888877 344332 367888888888888642 445677888888888888888776667788888888888
Q ss_pred cCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCC
Q 016534 306 RYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQG 360 (388)
Q Consensus 306 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~ 360 (388)
++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8888887666667788888888888888876555556677888888888888763
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=127.93 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=95.0
Q ss_pred CEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEcc
Q 016534 203 SELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLG 282 (388)
Q Consensus 203 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 282 (388)
+.++++++++.. + |..+ .++|++|++++|.++ .+|..+..+++|++|++++|+++++. +..+.++++|++|+++
T Consensus 13 ~~l~~~~~~l~~-i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV-L-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS-C-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc-C-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECC
Confidence 567777777763 3 3333 257888888888887 55677788888888888888888743 5567778888888888
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCcc
Q 016534 283 FNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIG 336 (388)
Q Consensus 283 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 336 (388)
+|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888887777777788888888888888886555567778888888888887654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=6.6e-15 Score=123.43 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=51.6
Q ss_pred ccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 016534 226 QLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSM 305 (388)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 305 (388)
+|++|++++|.+++..+..+..+++|++|++++|++++++ +..+..+++|++|++++|++++.++..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4444444444444333333444444444444444444321 223344455555555555555444444444555555555
Q ss_pred cCCcccccCCccccCCCCCcEEeCcCCcCccC
Q 016534 306 RYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGK 337 (388)
Q Consensus 306 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 337 (388)
++|++++..+..+..+++|+.|++++|++.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55555533333344455555555555555443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=6.4e-15 Score=125.36 Aligned_cols=128 Identities=26% Similarity=0.272 Sum_probs=109.1
Q ss_pred cCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 016534 227 LEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMR 306 (388)
Q Consensus 227 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 306 (388)
-+.+++++|.++ .+|..+. ++|++|++++|+++. +|..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 367899999887 5554442 589999999999985 56778889999999999999998888889999999999999
Q ss_pred CCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 307 YNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 307 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+|++++..+..|..+++|+.|+|++|.++...+..+..+++|+.+++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999888888999999999999999998766667888899999999999876
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.4e-15 Score=127.42 Aligned_cols=134 Identities=14% Similarity=0.066 Sum_probs=99.3
Q ss_pred ccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 016534 220 SFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPM 299 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 299 (388)
.+..+++|++|++++|.++. ++......++|++|++++|.++++ ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45667888888888888874 444333344888888888888864 45677888888888888888765555677888
Q ss_pred CCEEEccCCcccccCCc--cccCCCCCcEEeCcCCcCccCCCcc----CcCCCCCcEEEcCCCcCC
Q 016534 300 LSSLSMRYNRLRGGIPL--EFSHKKSLKRLFLDGNFLIGKAPIG----FFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 300 L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~~~~L~~l~l~~n~l~ 359 (388)
|++|++++|.+. .+|. .+..+++|+.|++++|+++. +|.. +..++.|+.+++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 5555 67778888888888888764 4543 677788888888777653
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=9.9e-14 Score=131.38 Aligned_cols=261 Identities=14% Similarity=0.074 Sum_probs=173.4
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEE
Q 016534 105 QLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRL 184 (388)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 184 (388)
.+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .+...-+..+..+++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3466677776553 444445566664 5777777655 55444555666 4677777765 4443334566677777777
Q ss_pred EcccCcCCCCCCCC--CCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCC
Q 016534 185 DLSYNKLTGSLPKL--PPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 185 ~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 262 (388)
++..|.++...... ..+|+.+.+..+ +. .+...+|.++++|+.+++..+ ++..-...|.. ++|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 77777665211111 256777777644 33 344678888889999998864 55444455555 788888884 4455
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCC-----CCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccC
Q 016534 263 RVGISKPVDGRSDLVAVDLGFNKIQ-----GYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGK 337 (388)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 337 (388)
.++ ...|.++++|+.+++.+|.+. ......|..|++|+.+++.+ .++..-...|..+++|+.+.|..+ ++..
T Consensus 261 ~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 261 NIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp EEC-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred EEC-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 533 556778889999998887765 34566788889999999984 476566677888889999998655 5555
Q ss_pred CCccCcCCCCCcEEEcCCCcCCCCCC-CCCCCC-CCcccccccc
Q 016534 338 APIGFFTGDVPVAGSLGDNCLQGCPV-SSQLCS-PSQKSYSVCK 379 (388)
Q Consensus 338 ~p~~~~~~~~L~~l~l~~n~l~~~p~-~~~~~~-~L~~l~l~~n 379 (388)
....|..+ +|+.+++.+|.+..++. .+.+++ +++.+++-.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 56677777 89999999888776543 355564 4666666543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=4.5e-15 Score=124.36 Aligned_cols=129 Identities=12% Similarity=-0.028 Sum_probs=78.5
Q ss_pred hcCCCCCEEEccCCCCCCCCCCCCCCC-CCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 016534 246 FLLPALQQVNLSNNTLTRVGISKPVDG-RSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSL 324 (388)
Q Consensus 246 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 324 (388)
..+++|++|++++|+++.+ +. +.. .++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCchh--HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3455666666666666642 32 223 33666677766666653 455666666667776666664433444666666
Q ss_pred cEEeCcCCcCccCCCc--cCcCCCCCcEEEcCCCcCCCCCCC----CCCCCCCccccccccC
Q 016534 325 KRLFLDGNFLIGKAPI--GFFTGDVPVAGSLGDNCLQGCPVS----SQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 325 ~~L~Ls~n~l~~~~p~--~~~~~~~L~~l~l~~n~l~~~p~~----~~~~~~L~~l~l~~n~ 380 (388)
++|++++|.++ .+|. .+..+++|+.+++++|+++.+|.. +..+++|+.||++.|.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666663 3343 555666666666666666666653 5666666666666654
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=6.2e-13 Score=125.93 Aligned_cols=245 Identities=16% Similarity=0.185 Sum_probs=188.5
Q ss_pred ccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCC
Q 016534 101 PLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSS 180 (388)
Q Consensus 101 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 180 (388)
.+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .+....+.+|.++.+|+.+++..|.++ .++.......+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecc
Confidence 456665 7999999776 666666778774 699999986 666566678999999999999999888 66666556789
Q ss_pred CcEEEcccCcCCC---CCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEcc
Q 016534 181 LRRLDLSYNKLTG---SLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLS 257 (388)
Q Consensus 181 L~~L~l~~n~l~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 257 (388)
|+.+.+..+ +.. ......++|+.+.+..+ +. .+...+|.+ .+|+.+.+. +.++......|..+++|+.+.+.
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 999999754 331 12222368999999875 33 444667877 789999995 45665667889999999999999
Q ss_pred CCCCC-----CCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCC
Q 016534 258 NNTLT-----RVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGN 332 (388)
Q Consensus 258 ~n~l~-----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 332 (388)
+|.+. .+ ....|.++++|+.+++. +.++......|..|.+|+.+++..+ ++..-..+|..+ +|+.+++++|
T Consensus 280 ~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 280 GSTFNDDPEAMI-HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSCCCCCTTCEE-CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CccccCCcccEE-CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 98765 22 24578889999999999 4587777788999999999999665 665667788898 9999999999
Q ss_pred cCccCCCccCcCC-CCCcEEEcCCCcCC
Q 016534 333 FLIGKAPIGFFTG-DVPVAGSLGDNCLQ 359 (388)
Q Consensus 333 ~l~~~~p~~~~~~-~~L~~l~l~~n~l~ 359 (388)
.+....+..+..+ ..++.+++..+.+.
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCcccccccccCCCCCccEEEeCHHHHH
Confidence 8876666677777 47888888776543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=7.7e-17 Score=137.94 Aligned_cols=112 Identities=26% Similarity=0.237 Sum_probs=54.9
Q ss_pred hhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCE
Q 016534 150 SLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEV 229 (388)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 229 (388)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+ +..+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l----------------------~~~~~~~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KI----------------------ENLDAVADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SC----------------------SSHHHHHHHCSE
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cc----------------------cchhhcCCcCCE
Confidence 55555666666666665553 44 4455555555555555444 11 222333455556
Q ss_pred EEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCC
Q 016534 230 IELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQG 288 (388)
Q Consensus 230 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 288 (388)
|++++|.+++ +| .+..+++|++|++++|++++++....+..+++|++|++++|.+++
T Consensus 98 L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 98 LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 6666655553 23 344555555555555555542111123344444445554444443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.2e-16 Score=136.65 Aligned_cols=150 Identities=25% Similarity=0.330 Sum_probs=88.4
Q ss_pred eEEEEeCCCCCCCCCcc------cccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCC
Q 016534 85 VTQLTLDPAGYSGQLTP------LISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLD 158 (388)
Q Consensus 85 l~~L~l~~~~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 158 (388)
++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 34444444444444443 66667777777777776665 44 5666677777777777666 4565566666677
Q ss_pred EEEccCCcCCCCcCccccCCCCCcEEEcccCcCCCCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCC
Q 016534 159 SLDLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLTGSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFT 238 (388)
Q Consensus 159 ~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 238 (388)
+|++++|.+++ +| .+..+++|++|++++|.+++ ......+..+++|++|++++|.++
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~---------------------~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN---------------------WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC---------------------HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc---------------------hhHHHHHhcCCCCCEEEecCCccc
Confidence 77777666663 33 45555566666666655541 110124566777777777777765
Q ss_pred CcchH----------HhhcCCCCCEEEccCCCCC
Q 016534 239 GTLEA----------WFFLLPALQQVNLSNNTLT 262 (388)
Q Consensus 239 ~~~~~----------~~~~l~~L~~L~L~~n~l~ 262 (388)
+..|. .+..+++|++|+ ++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 154 NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 44432 256677777665 44444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=4.1e-13 Score=111.70 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=82.3
Q ss_pred ccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 016534 226 QLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSM 305 (388)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 305 (388)
..+.+++++|.++. +|..+ .++|++|++++|+++++ .+..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45678888888873 55444 26788888888888874 3666777888888888888888777767778888888888
Q ss_pred cCCcccccCCccccCCCCCcEEeCcCCcCccCC
Q 016534 306 RYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKA 338 (388)
Q Consensus 306 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 338 (388)
++|++++..+..+..+++|+.|+|++|++....
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 888888666666778888888888888776543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=4.9e-13 Score=111.66 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=78.5
Q ss_pred cCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 016534 227 LEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMR 306 (388)
Q Consensus 227 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 306 (388)
-+.+++++|.++ .+|..+. ++|++|++++|+++++ .|..+..+++|++|+|++|++++.++..|..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888776 4555443 6788888888888774 36667778888888888888887666667778888888888
Q ss_pred CCcccccCCccccCCCCCcEEeCcCCcCcc
Q 016534 307 YNRLRGGIPLEFSHKKSLKRLFLDGNFLIG 336 (388)
Q Consensus 307 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 336 (388)
+|++++..+..+..+++|+.|+|++|++..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 888885555557778888888888887764
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.1e-13 Score=112.43 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=72.1
Q ss_pred CCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEc
Q 016534 202 LSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDL 281 (388)
Q Consensus 202 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 281 (388)
.+.+++++|++.. + |..+ .++|++|++++|.+++..|..|..+++|++|++++|++++++ +..+..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~~-i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLAS-V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSS-C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEEC
Confidence 4567777777664 3 3333 256777777777777666677777777777777777777632 444566777777777
Q ss_pred cCCcCCCCCcccccCCCCCCEEEccCCccccc
Q 016534 282 GFNKIQGYLPVNFADYPMLSSLSMRYNRLRGG 313 (388)
Q Consensus 282 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 313 (388)
++|++++..+..+..+++|++|++++|.++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77777766666677777777777777776644
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.8e-12 Score=108.22 Aligned_cols=105 Identities=24% Similarity=0.194 Sum_probs=91.6
Q ss_pred EEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCC
Q 016534 86 TQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYN 165 (388)
Q Consensus 86 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 165 (388)
+.++++++++. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999885 6776554 89999999999999888999999999999999999999766666889999999999999
Q ss_pred cCCCCcCccccCCCCCcEEEcccCcCCC
Q 016534 166 SLSGSLPKNTFLMSSLRRLDLSYNKLTG 193 (388)
Q Consensus 166 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 193 (388)
.+++..+..+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9995555558889999999999998873
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.1e-14 Score=136.63 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=117.4
Q ss_pred CCCCEEEccCCccCcccC---ccccC-CCCccCEEEccCCcCCCcchHHh-hcCCCCCEEEccCCCCCCCCCCCCC----
Q 016534 200 PNLSELALKNNVLSGVIT---KNSFD-GLTQLEVIELSENSFTGTLEAWF-FLLPALQQVNLSNNTLTRVGISKPV---- 270 (388)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~---~~~l~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~---- 270 (388)
+.|++|++++|.++.... ...+. ..++|++|++++|.++......+ ..+++|++|++++|.+++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-HHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-HHHHHHHH
Confidence 689999999999875320 11222 33689999999999875433333 34568999999999987632 1122
Q ss_pred -CCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEeCcCCcCccCC---
Q 016534 271 -DGRSDLVAVDLGFNKIQGY----LPVNFADYPMLSSLSMRYNRLRGG----IPLEFSHKKSLKRLFLDGNFLIGKA--- 338 (388)
Q Consensus 271 -~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~--- 338 (388)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+.+. ++..+...++|+.|+|++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2467899999999999753 334456788999999999998753 3556777889999999999998643
Q ss_pred -CccCcCCCCCcEEEcCCCcCC
Q 016534 339 -PIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 339 -p~~~~~~~~L~~l~l~~n~l~ 359 (388)
+..+...+.|+.|++++|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 344456689999999999987
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=1.2e-10 Score=110.07 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCc-------C----------
Q 016534 81 DSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNS-------F---------- 143 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l---------- 143 (388)
+..+++++.+.. ++...-..+|.++++|+.+++.++ ++..-..+|.++..|+.+.+..+- +
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 346788888864 344333457889999999999764 544445667777777766553320 1
Q ss_pred ----CCCCchhhcCCCCCCEEEccCCcCCCCcCccccCCCCCcEEEcccC
Q 016534 144 ----SSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFLMSSLRRLDLSYN 189 (388)
Q Consensus 144 ----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l~~n 189 (388)
......+|.++.+|+.+.+..+... .-...+..+.+|+.+.+..+
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred CccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence 1112345778889999998765432 33445667888888887655
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2e-13 Score=128.02 Aligned_cols=181 Identities=18% Similarity=0.111 Sum_probs=127.7
Q ss_pred CCCCcEEEcccCcCCCCCC--------CCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHh----
Q 016534 178 MSSLRRLDLSYNKLTGSLP--------KLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWF---- 245 (388)
Q Consensus 178 ~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---- 245 (388)
.++|+.|++++|.++.... ...++|++|++++|.+...-.......+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5679999999999874211 2236899999999998754312223346789999999999985544444
Q ss_pred -hcCCCCCEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCCcCCCCC----cccccCCCCCCEEEccCCccccc----
Q 016534 246 -FLLPALQQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFNKIQGYL----PVNFADYPMLSSLSMRYNRLRGG---- 313 (388)
Q Consensus 246 -~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~---- 313 (388)
...++|++|++++|.++... ++..+...++|++|+|++|.+++.. +..+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 24688999999999987522 2223456789999999999998642 45566778999999999999853
Q ss_pred CCccccCCCCCcEEeCcCCcCccCCCccCcCC---C--CCcEEE--cCCCcC
Q 016534 314 IPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG---D--VPVAGS--LGDNCL 358 (388)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~---~--~L~~l~--l~~n~l 358 (388)
+...+...++|++|+|++|.+++.....+... . .++.+. +..+.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 44455667899999999999987655544433 1 155555 444444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=2.9e-11 Score=112.32 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=82.1
Q ss_pred CEEEccCC-cCCCcchHHhhcCCCCCEEEccC-CCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 016534 228 EVIELSEN-SFTGTLEAWFFLLPALQQVNLSN-NTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSM 305 (388)
Q Consensus 228 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 305 (388)
..++++++ +++ .+|. +..+++|++|+|++ |++++++ +..+..+++|++|+|++|++++.+|..|..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35678877 777 4666 88888888888886 8888742 456778888888888888888888888888888888888
Q ss_pred cCCcccccCCccccCCCCCcEEeCcCCcCccC
Q 016534 306 RYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGK 337 (388)
Q Consensus 306 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 337 (388)
++|+|++..+..+..++ |+.|+|.+|++...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 88888866555565555 88888888887643
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=4.5e-11 Score=111.02 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=90.9
Q ss_pred CEEEccCC-CCCCCCCCCCCCCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeC
Q 016534 252 QQVNLSNN-TLTRVGISKPVDGRSDLVAVDLGF-NKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFL 329 (388)
Q Consensus 252 ~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 329 (388)
..++++++ +++. +|. +..+.+|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45788888 8887 577 88899999999996 9999988889999999999999999999999999999999999999
Q ss_pred cCCcCccCCCccCcCCCCCcEEEcCCCcCC
Q 016534 330 DGNFLIGKAPIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 330 s~n~l~~~~p~~~~~~~~L~~l~l~~n~l~ 359 (388)
++|++++..+..+..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999865444444444 999999999987
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=6.8e-10 Score=104.94 Aligned_cols=267 Identities=15% Similarity=0.067 Sum_probs=147.5
Q ss_pred ccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEccCCcCC------------
Q 016534 101 PLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLSYNSLS------------ 168 (388)
Q Consensus 101 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------ 168 (388)
.+|.++.+|+.+.|.. .++..-..+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+-..
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 4688999999999975 476666778999999999999754 55344567778888877666433110
Q ss_pred ---------CCcCccccCCCCCcEEEcccCcCC--CCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC
Q 016534 169 ---------GSLPKNTFLMSSLRRLDLSYNKLT--GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF 237 (388)
Q Consensus 169 ---------~~~p~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 237 (388)
.....++..+++|+.+.+..+... ........+|+.+.+..+ +. .+...++.++..|+.+.+..+..
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCce
Confidence 011233455677777777544211 111111245555555443 11 22244555555555555443321
Q ss_pred CCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCC--------------------CCCcccccCC
Q 016534 238 TGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQ--------------------GYLPVNFADY 297 (388)
Q Consensus 238 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--------------------~~~~~~l~~l 297 (388)
.+.........|+.+.+.... +.+. ...+..+..++.+.+..+... ......+..+
T Consensus 221 --~i~~~~~~~~~l~~i~ip~~~-~~i~-~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~ 296 (394)
T 4fs7_A 221 --YLGDFALSKTGVKNIIIPDSF-TELG-KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGC 296 (394)
T ss_dssp --EECTTTTTTCCCCEEEECTTC-CEEC-SSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTC
T ss_pred --EeehhhcccCCCceEEECCCc-eecc-cccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccc
Confidence 111112222334444433221 1100 112233344444443322110 0112345567
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCC-CCCCCCCCCccccc
Q 016534 298 PMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCP-VSSQLCSPSQKSYS 376 (388)
Q Consensus 298 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p-~~~~~~~~L~~l~l 376 (388)
.+|+.+.+.++ ++..-..+|..+.+|+.+++.++ ++.....+|.+|.+|+.+++..+ ++.+. ..+.+|.+|+.+++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 77787777654 55444556778888888888654 44444556777788888888765 55554 34778888888877
Q ss_pred cc
Q 016534 377 VC 378 (388)
Q Consensus 377 ~~ 378 (388)
..
T Consensus 374 p~ 375 (394)
T 4fs7_A 374 PK 375 (394)
T ss_dssp EG
T ss_pred CC
Confidence 54
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=2.9e-09 Score=100.62 Aligned_cols=284 Identities=13% Similarity=0.076 Sum_probs=145.4
Q ss_pred eEEEEeCCCCCCCCCcccccCCCCCCEEEccCCc---CCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEE
Q 016534 85 VTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNY---FFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLD 161 (388)
Q Consensus 85 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 161 (388)
++++.+... ++.--..+|.++++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 455555432 222223456777777777776652 44444556667777776665443 3323445566777777777
Q ss_pred ccCCcCCCCcCccccCCCCCcEEEcccCcCC-CCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcC---
Q 016534 162 LSYNSLSGSLPKNTFLMSSLRRLDLSYNKLT-GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSF--- 237 (388)
Q Consensus 162 L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l--- 237 (388)
+..+. .......+..+.+|+.+.+..+--. +...-...+|+.+.+..+-.. +...++..+..++......+..
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~--i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTR--IGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCE--ECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccee-eeecccceecccccccccccceeeEeccccccccceeEEEECCcccc--cccchhhhccccceecccccccccc
Confidence 75432 2123344556667777766544111 000000134555555432211 1133444555554444332211
Q ss_pred ---------------------------------CCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCC
Q 016534 238 ---------------------------------TGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFN 284 (388)
Q Consensus 238 ---------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n 284 (388)
+..-...|..+..|+.+.+.++... + ....+.++..|+.+.+. +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I-~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-I-GTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-E-CTTTTTTCTTCCEEECC-T
T ss_pred cceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-e-cCcccccccccccccCC-C
Confidence 1111234555666777766554322 1 13345567777777774 3
Q ss_pred cCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCCCC
Q 016534 285 KIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCPVS 364 (388)
Q Consensus 285 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p~~ 364 (388)
.++......|..+.+|+.+++..+ ++..-..+|..+.+|+.+.+..+ ++.....+|.+|++|+.+++.++.... ..
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~ 373 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NA 373 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HT
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hh
Confidence 455455566777777777777653 54344556777777777777544 443334566677777777777664221 13
Q ss_pred CCCCCCCccccccccC
Q 016534 365 SQLCSPSQKSYSVCKQ 380 (388)
Q Consensus 365 ~~~~~~L~~l~l~~n~ 380 (388)
+..|.+|+.+.+..|.
T Consensus 374 ~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CBCCCCC---------
T ss_pred hhccCCCCEEEeCCCC
Confidence 4556667766665543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=9e-11 Score=109.22 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=71.8
Q ss_pred CCccCEEEccCCcCCCcchHHhh--cCCCCCEEEccC--CCCCCC----CCCCCC--CCCCCCCEEEccCCcCCCCCccc
Q 016534 224 LTQLEVIELSENSFTGTLEAWFF--LLPALQQVNLSN--NTLTRV----GISKPV--DGRSDLVAVDLGFNKIQGYLPVN 293 (388)
Q Consensus 224 l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~----~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~ 293 (388)
+++|++|++..+.+.......+. .+++|++|+|+. +...+. .+...+ ..+++|++|++.+|.+++..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45666666666655533333333 456666666542 111110 001111 23677778887777776433222
Q ss_pred cc---CCCCCCEEEccCCccccc----CCccccCCCCCcEEeCcCCcCccCCCccCcC-CCCCcEEEcCCCc
Q 016534 294 FA---DYPMLSSLSMRYNRLRGG----IPLEFSHKKSLKRLFLDGNFLIGKAPIGFFT-GDVPVAGSLGDNC 357 (388)
Q Consensus 294 l~---~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~l~l~~n~ 357 (388)
+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.+++.....+.. + ...++++.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 22 456788888887777653 3333445677888888877776554333332 2 3456776665
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.03 E-value=5.4e-08 Score=91.85 Aligned_cols=268 Identities=13% Similarity=0.130 Sum_probs=182.4
Q ss_pred cccCCC-CCCEEEccCCcCCccCcccccCCCCCCEEeeecCc---CCCCCchhhcCCCCCCEEEccCCcCCCCcCccccC
Q 016534 102 LISQLT-QLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNS---FSSSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTFL 177 (388)
Q Consensus 102 ~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 177 (388)
+|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++..-...+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 466664 5999999764 666667889999999999998763 55445667888999998887654 33233456778
Q ss_pred CCCCcEEEcccCcCC--CCCCCCCCCCCEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEE
Q 016534 178 MSSLRRLDLSYNKLT--GSLPKLPPNLSELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVN 255 (388)
Q Consensus 178 ~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 255 (388)
+.+|+.+.+..+... ........+|+.+.+..+- . .+...+|.. ..|+.+.+..+. +......+..+.+++...
T Consensus 136 c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEE
T ss_pred hcccccccccceeeeecccceeccccccccccccee-e-Eeccccccc-cceeEEEECCcc-cccccchhhhccccceec
Confidence 899999998654221 1222233678888876542 2 233445654 678888887643 324445566666666665
Q ss_pred ccCCCCCC---------------------------CCC--------CCCCCCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 016534 256 LSNNTLTR---------------------------VGI--------SKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPML 300 (388)
Q Consensus 256 L~~n~l~~---------------------------~~~--------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 300 (388)
...+.... +.+ ...+.++..|+.+.+..+.. ......|..++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L 290 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPAL 290 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTC
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCccccccccc
Confidence 44332111 111 22456678888888866543 3445677888999
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCCCcCCCCC-CCCCCCCCCcccccccc
Q 016534 301 SSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGDNCLQGCP-VSSQLCSPSQKSYSVCK 379 (388)
Q Consensus 301 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~n~l~~~p-~~~~~~~~L~~l~l~~n 379 (388)
+.+.+. +.++......|..+.+|+.++|..+ ++.....+|.+|.+|+.+.+..+ ++.+. ..+.+|.+|+.+++.++
T Consensus 291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 999996 4566455667889999999999765 44444567888999999999654 66665 34889999999998765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.2e-09 Score=101.64 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=120.0
Q ss_pred CCceEEEEeCCCCCCC-CC-------cccccCCCCCCEEEccCCcCC---------ccCcccccCCCCCCEEeeecCcCC
Q 016534 82 STRVTQLTLDPAGYSG-QL-------TPLISQLTQLTILDLSDNYFF---------GPIPASISSLSNLQMLTLRSNSFS 144 (388)
Q Consensus 82 ~~~l~~L~l~~~~l~~-~~-------~~~l~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~L~~n~l~ 144 (388)
..+|+.|.+....+.| .. ..++.++++|+.|.+.+.... +.+...+..+|+|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4678899988766653 22 334567889999988665321 123344566788888888876311
Q ss_pred CCCchhhcCCCCCCEEEccCCcCCCCcCcccc--CCCCCcEEEccc--CcCCCCCCCCCCCCCEEEccCCccCcccCccc
Q 016534 145 SSVPDSLTQLKNLDSLDLSYNSLSGSLPKNTF--LMSSLRRLDLSY--NKLTGSLPKLPPNLSELALKNNVLSGVITKNS 220 (388)
Q Consensus 145 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~l~~--n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (388)
.++. + .+++|++|++..+.+.......+. .+++|+.|+++. +...+.. . +. .+ ...
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~--------------~~-~l-~~~ 245 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-D--------------MN-VF-RPL 245 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-C--------------GG-GT-GGG
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-h--------------HH-HH-HHH
Confidence 2333 3 377888888877776533333332 577788877753 1111100 0 00 00 011
Q ss_pred c--CCCCccCEEEccCCcCCCcchHHhh---cCCCCCEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCCcCCCCCcc
Q 016534 221 F--DGLTQLEVIELSENSFTGTLEAWFF---LLPALQQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFNKIQGYLPV 292 (388)
Q Consensus 221 l--~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~ 292 (388)
+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+++.. ++..+..+++|+.|++++|.++.....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 1 2467888888887777644433343 3567888888888776521 222233467888888888887754333
Q ss_pred cccC-CCCCCEEEccCCc
Q 016534 293 NFAD-YPMLSSLSMRYNR 309 (388)
Q Consensus 293 ~l~~-l~~L~~L~L~~n~ 309 (388)
.+.. + ...+++++++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3332 2 3556776665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=6.9e-07 Score=83.66 Aligned_cols=260 Identities=14% Similarity=0.148 Sum_probs=122.4
Q ss_pred ceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 84 RVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 84 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
+++++.+.. +++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +......+|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 455665543 233222345777888888888643 554455666665 5666666433 33233334444 467887776
Q ss_pred CCcCCCCcCccccCCCCCcEEEcccCcC--CCCCCCCCCCCCEEEccCCccCc---------------------------
Q 016534 164 YNSLSGSLPKNTFLMSSLRRLDLSYNKL--TGSLPKLPPNLSELALKNNVLSG--------------------------- 214 (388)
Q Consensus 164 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l--~~~~~~~~~~L~~L~l~~n~~~~--------------------------- 214 (388)
.+- . .+........+++.+.+..+-- .........+++.+.+..+....
T Consensus 122 ~~~-~-~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 122 GAT-T-EIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp TTC-C-EECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred Ccc-c-cccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 542 2 2222222333555555543311 11111111333333332211100
Q ss_pred -------ccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 016534 215 -------VITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQ 287 (388)
Q Consensus 215 -------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 287 (388)
.+....+..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++.+. ...+..+.+|+.+.+..+ ++
T Consensus 200 ~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~-~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 200 TIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG-SFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp ECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC-TTTTTTCTTCCEEEECCC-CS
T ss_pred ccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC-ccccceeehhcccccccc-ce
Confidence 011122333344444444332 22222334445555555555543 33221 234445556666665432 33
Q ss_pred CCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCCCCCcEEEcCC
Q 016534 288 GYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTGDVPVAGSLGD 355 (388)
Q Consensus 288 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~l~l~~ 355 (388)
......|..+.+|+.+.+.++.++..-...|..+.+|+.+.|..+ ++.....+|.+|.+|+.+.+..
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 333445556666666666665555444455666666666666543 3333334555566666665543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.71 E-value=2.8e-06 Score=79.47 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=150.1
Q ss_pred CCCceEEEEeCCCCCCCCCcccccCCCCCCEEEccCCcCCccCcccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEE
Q 016534 81 DSTRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDNYFFGPIPASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSL 160 (388)
Q Consensus 81 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 160 (388)
+..+++++++..+ ++..-..+|.++ .|+.+.+..+ ++..-..+|... +|+.+.+..+ +.......|.+ .+++.+
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~ 140 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYN-SSVKRI 140 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEE
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-ccccccccccc-ceeeee
Confidence 3467888888643 432223456665 5777766543 333333445443 6777777543 22122223332 244444
Q ss_pred EccCCcCCCCcCccccCCCCCcEEEcccCcCC--------------------------------------CCCCCCCCCC
Q 016534 161 DLSYNSLSGSLPKNTFLMSSLRRLDLSYNKLT--------------------------------------GSLPKLPPNL 202 (388)
Q Consensus 161 ~L~~n~l~~~~p~~l~~~~~L~~L~l~~n~l~--------------------------------------~~~~~~~~~L 202 (388)
.+..+ ++..-...+..+..++.+.+..+... ........++
T Consensus 141 ~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l 219 (379)
T 4h09_A 141 VIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNL 219 (379)
T ss_dssp EECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSC
T ss_pred eccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccccccc
Confidence 44322 11112223333444444433222110 0000112566
Q ss_pred CEEEccCCccCcccCccccCCCCccCEEEccCCcCCCcchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEcc
Q 016534 203 SELALKNNVLSGVITKNSFDGLTQLEVIELSENSFTGTLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLG 282 (388)
Q Consensus 203 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 282 (388)
+.+.+..+- . .+....+..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ +..++ ...+.++.+|+.+.+.
T Consensus 220 ~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~-~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 220 KKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVP-YLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEEC-TTTTTTCTTCCEEEEC
T ss_pred ceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecc-cccccccccccccccc
Confidence 776665432 2 233567888999999999875 65455677888999999999764 44422 4467889999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCccCCCccCcCC
Q 016534 283 FNKIQGYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLIGKAPIGFFTG 345 (388)
Q Consensus 283 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 345 (388)
++.++......|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.++
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 99898777789999999999999764 66455678999999999998655 433333445444
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=7.3e-09 Score=87.04 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=59.7
Q ss_pred ccCCCCccCEEEccCC-cCCCc----chHHhhcCCCCCEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCCcCCCC--
Q 016534 220 SFDGLTQLEVIELSEN-SFTGT----LEAWFFLLPALQQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFNKIQGY-- 289 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~-- 289 (388)
.+...+.|++|++++| .+... +...+...++|++|+|++|.+.+.. +...+...+.|++|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455566777777766 66532 2334444566666666666655411 111122345566666666666542
Q ss_pred --CcccccCCCCCCEEEc--cCCccccc----CCccccCCCCCcEEeCcCCcCc
Q 016534 290 --LPVNFADYPMLSSLSM--RYNRLRGG----IPLEFSHKKSLKRLFLDGNFLI 335 (388)
Q Consensus 290 --~~~~l~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~ 335 (388)
+...+...++|++|++ ++|.+... +...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333444555666666 55555532 2233344455666666665543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=6.5e-09 Score=87.32 Aligned_cols=120 Identities=14% Similarity=0.042 Sum_probs=87.0
Q ss_pred cchHHhhcCCCCCEEEccCC-CCCCCC---CCCCCCCCCCCCEEEccCCcCCCCC----cccccCCCCCCEEEccCCccc
Q 016534 240 TLEAWFFLLPALQQVNLSNN-TLTRVG---ISKPVDGRSDLVAVDLGFNKIQGYL----PVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 311 (388)
.+...+...+.|++|+|++| .+.... +...+...++|++|+|++|.++... ...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34556777889999999999 887521 2223455788999999999987542 334455678999999999887
Q ss_pred cc----CCccccCCCCCcEEeC--cCCcCccCC----CccCcCCCCCcEEEcCCCcCC
Q 016534 312 GG----IPLEFSHKKSLKRLFL--DGNFLIGKA----PIGFFTGDVPVAGSLGDNCLQ 359 (388)
Q Consensus 312 ~~----~p~~~~~l~~L~~L~L--s~n~l~~~~----p~~~~~~~~L~~l~l~~n~l~ 359 (388)
.. +...+...++|++|+| ++|.++... ...+...+.|+.|++++|.++
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 53 4556777788999999 778887653 334445578888888888764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=2.3e-08 Score=88.41 Aligned_cols=104 Identities=25% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCCccCE--EEccCCcCC---CcchHHhhcCCCCCEEEccCCCCCCCC-CCCCCCCCCCCCEEEccCCcCCCCCcccccC
Q 016534 223 GLTQLEV--IELSENSFT---GTLEAWFFLLPALQQVNLSNNTLTRVG-ISKPVDGRSDLVAVDLGFNKIQGYLPVNFAD 296 (388)
Q Consensus 223 ~l~~L~~--L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 296 (388)
..+.|+. ++++.|... +.++....++++|+.|+|++|++++++ ++..+..+++|+.|+|++|++++. ..+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh
Confidence 3344444 555666432 112222245677888888888777642 233344567777777777777754 22222
Q ss_pred CC--CCCEEEccCCcccccCCc-------cccCCCCCcEEe
Q 016534 297 YP--MLSSLSMRYNRLRGGIPL-------EFSHKKSLKRLF 328 (388)
Q Consensus 297 l~--~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~ 328 (388)
+. +|++|++++|.+.+.+|. .+..+++|+.||
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 22 677777777777665542 245566666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=7.1e-07 Score=78.89 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=65.7
Q ss_pred CCCCccCEEEccCCcCCC--cchHHhhcCCCCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc-------c
Q 016534 222 DGLTQLEVIELSENSFTG--TLEAWFFLLPALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLP-------V 292 (388)
Q Consensus 222 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~ 292 (388)
.++++|+.|++++|.+++ .++..+..+++|+.|+|++|++++..-...+..+ +|++|+|++|.+++..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 467899999999999997 5567788999999999999999985322223334 99999999999987655 2
Q ss_pred cccCCCCCCEEEc
Q 016534 293 NFADYPMLSSLSM 305 (388)
Q Consensus 293 ~l~~l~~L~~L~L 305 (388)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567899998873
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=7.9e-07 Score=73.11 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=42.6
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCCCEEEccCCc-CCCCCcccccCC----CCCCEEEccCC-cccccCCccccCCCC
Q 016534 250 ALQQVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNK-IQGYLPVNFADY----PMLSSLSMRYN-RLRGGIPLEFSHKKS 323 (388)
Q Consensus 250 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n-~l~~~~p~~~~~l~~ 323 (388)
.|+.|+++++.+++..+ ..+.++++|++|+|++|. +++..-..+..+ ++|++|++++| +++..--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46666666666555322 234456666666666653 444333333332 24666666655 255433344455555
Q ss_pred CcEEeCcCC
Q 016534 324 LKRLFLDGN 332 (388)
Q Consensus 324 L~~L~Ls~n 332 (388)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=2.1e-06 Score=70.63 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCCCCCCcccccCCCCCCEEEccCC-cCCccCcccccCC----CCCCEEeeecCc-CCCCCchhhcCCCC
Q 016534 83 TRVTQLTLDPAGYSGQLTPLISQLTQLTILDLSDN-YFFGPIPASISSL----SNLQMLTLRSNS-FSSSVPDSLTQLKN 156 (388)
Q Consensus 83 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 156 (388)
-++++|+++++.++..--..+..+++|++|+|++| .+++.--..+..+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45788888877776655555677777888888777 4665444445553 357777777764 66544445666777
Q ss_pred CCEEEccCCc
Q 016534 157 LDSLDLSYNS 166 (388)
Q Consensus 157 L~~L~L~~n~ 166 (388)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=3.8e-05 Score=64.29 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCCCccCEEEccCC-cCCC----cchHHhhcCCCCCEEEccCCCCCCCC---CCCCCCCCCCCCEEEccCCcCCCC----
Q 016534 222 DGLTQLEVIELSEN-SFTG----TLEAWFFLLPALQQVNLSNNTLTRVG---ISKPVDGRSDLVAVDLGFNKIQGY---- 289 (388)
Q Consensus 222 ~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~---- 289 (388)
.+-+.|++|++++| .+.. .+.+.+..-+.|+.|+|++|++.+.. +.+.+...+.|++|+|++|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666654 5542 12344444556666666666665411 111122345566666666666532
Q ss_pred CcccccCCCCCCEEEccCCc---ccc----cCCccccCCCCCcEEeCcCCc
Q 016534 290 LPVNFADYPMLSSLSMRYNR---LRG----GIPLEFSHKKSLKRLFLDGNF 333 (388)
Q Consensus 290 ~~~~l~~l~~L~~L~L~~n~---l~~----~~p~~~~~l~~L~~L~Ls~n~ 333 (388)
+...+..-+.|++|+|++|. +.. .+...+...+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 12223334455666665432 221 122334444555555555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=2.5e-05 Score=65.39 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=80.8
Q ss_pred chHHhhcCCCCCEEEccCC-CCCCCC---CCCCCCCCCCCCEEEccCCcCCCCC----cccccCCCCCCEEEccCCcccc
Q 016534 241 LEAWFFLLPALQQVNLSNN-TLTRVG---ISKPVDGRSDLVAVDLGFNKIQGYL----PVNFADYPMLSSLSMRYNRLRG 312 (388)
Q Consensus 241 ~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~ 312 (388)
+...+.+-+.|++|+|++| ++.... +.+.+.....|+.|+|++|.+.... ...+..-+.|++|+|++|.|..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3445556788999999986 766421 2234555788999999999998543 3344456889999999999874
Q ss_pred c----CCccccCCCCCcEEeCcCC---cCccC----CCccCcCCCCCcEEEcCCCcC
Q 016534 313 G----IPLEFSHKKSLKRLFLDGN---FLIGK----APIGFFTGDVPVAGSLGDNCL 358 (388)
Q Consensus 313 ~----~p~~~~~l~~L~~L~Ls~n---~l~~~----~p~~~~~~~~L~~l~l~~n~l 358 (388)
. +-+.+...+.|++|+|++| .+... +...+...+.|+.++++.|..
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3 3345666778999999865 33332 233445557888888887654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0037 Score=48.58 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=30.5
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCccc
Q 016534 253 QVNLSNNTLTRVGISKPVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMRYNRLR 311 (388)
Q Consensus 253 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 311 (388)
.++.+++.++...+|..+ ..++++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 455555555511133322 345666666666666555555556666666666666443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0034 Score=48.74 Aligned_cols=57 Identities=23% Similarity=0.199 Sum_probs=45.2
Q ss_pred CEEEccCCcCC-CCCcccccCCCCCCEEEccCCcccccCCccccCCCCCcEEeCcCCcCc
Q 016534 277 VAVDLGFNKIQ-GYLPVNFADYPMLSSLSMRYNRLRGGIPLEFSHKKSLKRLFLDGNFLI 335 (388)
Q Consensus 277 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 335 (388)
.+++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 23555443 57899999999999666677888999999999999764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.09 E-value=36 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=16.6
Q ss_pred cccccCCCCCCEEeeecCcCCCCCchhhcCCCCCCEEEcc
Q 016534 124 PASISSLSNLQMLTLRSNSFSSSVPDSLTQLKNLDSLDLS 163 (388)
Q Consensus 124 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 163 (388)
..+|.++..|+.+.+-.+ ++..-..+|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444444444444332 222223344444555554444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.13 E-value=61 Score=23.00 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=14.9
Q ss_pred CCCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 016534 269 PVDGRSDLVAVDLGFNKIQGYLPVNFADYPMLSSLSMR 306 (388)
Q Consensus 269 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 306 (388)
.|.++.+|+.+.+-.+ ++.+....|..|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444444444444332 222223334444444444443
No 167
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=41.84 E-value=14 Score=19.58 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=12.0
Q ss_pred Ccchhhh-HHHHHHHHHHHHHHhh
Q 016534 1 MKLSSIS-NAASCFLLVIVQISLA 23 (388)
Q Consensus 1 ~~~~~~~-~~~~~~~l~~~~~~~~ 23 (388)
|++|.-. +...+++|++..+..+
T Consensus 1 MrkhLG~~wlai~c~LLfs~Ls~v 24 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASHLSTV 24 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHHTTTT
T ss_pred CcchhhhhHHHHHHHHHHhhHHHH
Confidence 7777755 3334455555444433
Done!