BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016535
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPI 383
+S+E K GNV+ +L R+ V+ L G+V V I S E FG+ +E M GAIPI
Sbjct: 88 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPI 143
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPI 383
+S+E K GNV+ +L R+ V+ L G+V V I S E FG+ +E M GAIPI
Sbjct: 303 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPI 358
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPI 383
+S+E K GNV+ +L R+ V+ L G+V V I S E FG+ +E M GAIPI
Sbjct: 303 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPI 358
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPI 383
+S+E K GNV+ +L R+ V+ L G+V V I S E FG+ +E M GAIPI
Sbjct: 304 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPI 359
>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
Length = 652
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLA 157
Y SW ++C+ TPLY D G +FT+P A
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAA 424
>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
Length = 652
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLA 157
Y SW ++C+ TPLY D G +FT+P A
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAA 424
>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
Length = 652
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLA 157
Y SW ++C+ TPLY D G +FT+P A
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAA 424
>pdb|3CGM|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3CGN|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3LUO|A Chain A, Crystal Structure And Functional Characterization Of The
The Prolyl Isomerase And Chaperone Slyd
Length = 158
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 247 KRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPE--KAHPLQLEAFSVALRKLDADLPR 304
++ Y P D G+QV+PL E ++ AQF + + +P+ L +V ++ D
Sbjct: 60 EKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNH 119
Query: 305 P 305
P
Sbjct: 120 P 120
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 319 EERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV-VGIHSMIDEHFGISVVEYMA 377
EE++ + +K IEL DG + Y+ LL + L G + + +HS++++ E+
Sbjct: 538 EEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGVEINLAVHSVMEKPEEFEAKEFEV 597
Query: 378 AGAIPIGK 385
IGK
Sbjct: 598 NDPYGIGK 605
>pdb|4G59|C Chain C, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
Homolog M152 With Ligand Rae-1 Gamma
pdb|4G59|D Chain D, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
Homolog M152 With Ligand Rae-1 Gamma
Length = 321
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 171 PTISLDMISRVREGS--SMYNNNASIAQSNWLSQCKIV 206
P +S D I+R +GS S+ +NA++ Q W S C+ +
Sbjct: 138 PDVSEDDIARYGQGSGISILRDNAALLQKRWTSFCRKI 175
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL 332
+SV + PEK LQLE F L +L VG ER + I
Sbjct: 27 LSVNRIYPEKRIELQLEVFK--------KLQDEKLYIVGWFSKGDHAERYA----RKIXK 74
Query: 333 KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG 379
NV+F ++ +L+ L + + DE FG++ +E A+G
Sbjct: 75 IAPDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASG 121
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339
PEK P + +F + ++ + L +PR + + + D L+ + + ++ + V+
Sbjct: 343 PEKPQPRRRSSFGIMIKAEEYILKKPRSELM--FEEQKDRHGLKRVNKMTSDIDIGTTVD 400
Query: 340 FYKNL 344
YK+L
Sbjct: 401 LYKDL 405
>pdb|1K1W|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
Length = 659
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 319 EERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV-VGIHSMIDEHFGISVVEYMA 377
EE++ + +K IEL DG + Y+ LL + L G + + +HS+ ++ E+
Sbjct: 538 EEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGVEINLAVHSVXEKPEEFEAKEFEV 597
Query: 378 AGAIPIGK 385
IGK
Sbjct: 598 NDPYGIGK 605
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339
PEK P + +F + ++ + L +PR + + + D L+ + + ++ + V+
Sbjct: 126 PEKPQPRRRSSFGIMIKAEEYILKKPRSELM--FEEQKDRHGLKRVNKMTSDIDIGTTVD 183
Query: 340 FYKNL 344
YK+L
Sbjct: 184 LYKDL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,243,568
Number of Sequences: 62578
Number of extensions: 514440
Number of successful extensions: 1100
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 16
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)