Query 016535
Match_columns 388
No_of_seqs 149 out of 2046
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02949 transferase, transfer 100.0 1.7E-58 3.7E-63 439.7 42.5 362 27-388 26-387 (463)
2 cd03806 GT1_ALG11_like This fa 100.0 4.8E-53 1E-57 401.7 37.9 353 35-387 1-356 (419)
3 KOG1387 Glycosyltransferase [C 100.0 7.5E-52 1.6E-56 356.2 33.1 354 23-388 33-389 (465)
4 cd03805 GT1_ALG2_like This fam 100.0 3.9E-37 8.4E-42 292.1 30.4 317 35-388 1-332 (392)
5 cd03796 GT1_PIG-A_like This fa 100.0 6.6E-35 1.4E-39 277.0 29.7 296 36-388 1-302 (398)
6 PRK10307 putative glycosyl tra 100.0 2.7E-33 5.9E-38 267.3 27.1 316 35-387 1-339 (412)
7 TIGR03088 stp2 sugar transfera 100.0 4.6E-32 9.9E-37 255.7 30.1 292 35-388 2-305 (374)
8 TIGR03449 mycothiol_MshA UDP-N 100.0 2.3E-32 4.9E-37 260.6 27.5 306 42-387 14-334 (405)
9 PLN02871 UDP-sulfoquinovose:DA 100.0 5E-32 1.1E-36 261.9 28.6 293 32-388 56-364 (465)
10 PRK15427 colanic acid biosynth 100.0 4.6E-32 9.9E-37 256.9 26.8 311 35-388 1-337 (406)
11 cd03812 GT1_CapH_like This fam 100.0 1E-31 2.2E-36 251.6 28.3 288 36-388 1-299 (358)
12 cd04962 GT1_like_5 This family 100.0 9.4E-32 2E-36 253.2 26.0 289 35-388 1-303 (371)
13 cd03818 GT1_ExpC_like This fam 100.0 1E-30 2.3E-35 248.2 31.8 310 36-388 1-333 (396)
14 PRK15179 Vi polysaccharide bio 100.0 1.1E-30 2.3E-35 257.5 32.4 310 33-388 279-624 (694)
15 PRK09922 UDP-D-galactose:(gluc 100.0 1.8E-31 4E-36 249.9 24.4 279 35-386 1-288 (359)
16 PLN02939 transferase, transfer 100.0 3E-30 6.6E-35 255.0 32.5 336 32-388 479-889 (977)
17 TIGR02472 sucr_P_syn_N sucrose 100.0 1.9E-30 4E-35 249.0 28.7 317 48-388 26-373 (439)
18 cd04955 GT1_like_6 This family 100.0 3.1E-30 6.7E-35 242.0 29.3 291 36-388 1-301 (363)
19 KOG1111 N-acetylglucosaminyltr 100.0 1.9E-32 4.2E-37 238.1 12.7 289 39-388 9-304 (426)
20 PRK00654 glgA glycogen synthas 100.0 2.2E-30 4.9E-35 250.0 28.0 322 35-388 1-389 (466)
21 cd03800 GT1_Sucrose_synthase T 100.0 7.9E-30 1.7E-34 242.3 29.5 302 47-387 20-334 (398)
22 cd03795 GT1_like_4 This family 100.0 9.1E-30 2E-34 238.2 29.3 287 36-388 1-298 (357)
23 cd03819 GT1_WavL_like This fam 100.0 9E-30 2E-34 238.2 29.3 279 40-388 3-297 (355)
24 PLN02316 synthase/transferase 100.0 1.3E-29 2.8E-34 255.0 31.8 308 32-388 585-952 (1036)
25 cd03816 GT1_ALG1_like This fam 100.0 7.8E-30 1.7E-34 242.9 28.2 309 33-388 2-350 (415)
26 cd03821 GT1_Bme6_like This fam 100.0 1.4E-29 3E-34 237.4 28.2 301 36-387 1-313 (375)
27 TIGR02095 glgA glycogen/starch 100.0 1.3E-29 2.9E-34 245.7 28.8 326 35-388 1-398 (473)
28 cd03804 GT1_wbaZ_like This fam 100.0 7.3E-30 1.6E-34 238.7 25.9 292 36-387 1-292 (351)
29 cd03802 GT1_AviGT4_like This f 100.0 6.9E-30 1.5E-34 237.0 25.5 270 35-388 1-277 (335)
30 cd03809 GT1_mtfB_like This fam 100.0 7.5E-30 1.6E-34 239.0 25.8 296 36-388 1-305 (365)
31 cd03791 GT1_Glycogen_synthase_ 100.0 3.1E-29 6.8E-34 243.8 29.4 326 36-388 1-403 (476)
32 PRK14099 glycogen synthase; Pr 100.0 4.8E-29 1E-33 240.3 30.3 329 33-388 2-402 (485)
33 PRK15484 lipopolysaccharide 1, 100.0 1.4E-29 3E-34 238.5 25.9 162 220-388 138-310 (380)
34 PRK14098 glycogen synthase; Pr 100.0 3.2E-29 6.9E-34 241.7 28.8 328 35-388 6-414 (489)
35 cd03799 GT1_amsK_like This is 100.0 2.1E-29 4.6E-34 235.5 26.6 284 36-388 1-294 (355)
36 cd05844 GT1_like_7 Glycosyltra 100.0 1.2E-29 2.7E-34 238.4 25.0 219 135-388 77-303 (367)
37 cd03811 GT1_WabH_like This fam 100.0 2E-29 4.3E-34 233.9 25.2 288 36-388 1-296 (353)
38 TIGR02468 sucrsPsyn_pln sucros 100.0 3.4E-29 7.3E-34 251.3 28.2 339 31-388 166-604 (1050)
39 PRK10125 putative glycosyl tra 100.0 6.4E-29 1.4E-33 234.7 28.0 314 35-388 1-339 (405)
40 cd04951 GT1_WbdM_like This fam 100.0 5.1E-29 1.1E-33 233.4 27.0 282 36-388 1-295 (360)
41 cd03817 GT1_UGDG_like This fam 100.0 1.1E-28 2.3E-33 231.5 28.2 299 36-388 1-311 (374)
42 cd03822 GT1_ecORF704_like This 100.0 2.6E-28 5.6E-33 228.7 29.8 286 36-388 1-302 (366)
43 TIGR02149 glgA_Coryne glycogen 100.0 1.2E-28 2.6E-33 233.6 27.1 297 35-388 1-313 (388)
44 PRK15490 Vi polysaccharide bio 100.0 6.5E-29 1.4E-33 234.4 24.7 218 130-388 270-505 (578)
45 cd03820 GT1_amsD_like This fam 100.0 1.9E-28 4.1E-33 227.1 27.6 283 36-387 1-284 (348)
46 cd03798 GT1_wlbH_like This fam 100.0 3.2E-28 7E-33 227.7 29.0 298 37-388 1-311 (377)
47 cd03792 GT1_Trehalose_phosphor 100.0 2E-28 4.3E-33 230.7 27.5 290 36-388 1-306 (372)
48 cd03807 GT1_WbnK_like This fam 100.0 4.2E-28 9.2E-33 226.4 28.3 288 36-388 1-301 (365)
49 cd03801 GT1_YqgM_like This fam 100.0 4.9E-28 1.1E-32 225.8 28.4 297 36-387 1-307 (374)
50 TIGR02470 sucr_synth sucrose s 100.0 5.4E-28 1.2E-32 238.1 29.4 332 30-388 251-676 (784)
51 cd03823 GT1_ExpE7_like This fa 100.0 5.9E-28 1.3E-32 225.4 26.6 287 36-388 1-296 (359)
52 PLN02275 transferase, transfer 100.0 1.5E-27 3.3E-32 224.0 29.4 222 136-388 96-342 (371)
53 cd03808 GT1_cap1E_like This fa 100.0 2.9E-27 6.2E-32 220.1 28.7 290 36-388 1-296 (359)
54 cd03814 GT1_like_2 This family 100.0 8.3E-28 1.8E-32 224.9 24.2 288 36-388 1-299 (364)
55 cd03813 GT1_like_3 This family 100.0 6.5E-28 1.4E-32 233.5 23.5 227 140-388 173-403 (475)
56 PLN02846 digalactosyldiacylgly 100.0 5.4E-27 1.2E-31 220.7 27.4 309 32-387 2-332 (462)
57 cd03794 GT1_wbuB_like This fam 100.0 7.4E-27 1.6E-31 220.0 27.8 313 36-388 1-332 (394)
58 TIGR03087 stp1 sugar transfera 100.0 1.8E-26 4E-31 219.1 26.5 224 134-387 98-330 (397)
59 PLN00142 sucrose synthase 100.0 9.1E-27 2E-31 229.5 24.4 229 139-388 407-699 (815)
60 cd03825 GT1_wcfI_like This fam 100.0 3.3E-26 7.2E-31 214.7 25.5 279 35-388 1-297 (365)
61 TIGR02918 accessory Sec system 99.9 8.3E-26 1.8E-30 217.8 23.3 153 219-387 268-424 (500)
62 cd04946 GT1_AmsK_like This fam 99.9 4.4E-25 9.5E-30 209.7 21.8 164 215-388 177-343 (407)
63 PHA01630 putative group 1 glyc 99.9 2.3E-24 5E-29 197.7 23.8 155 214-388 86-242 (331)
64 PLN02501 digalactosyldiacylgly 99.9 9.1E-25 2E-29 208.7 20.4 212 133-387 427-650 (794)
65 cd04949 GT1_gtfA_like This fam 99.9 4.3E-24 9.4E-29 201.3 21.0 156 219-387 155-310 (372)
66 PHA01633 putative glycosyl tra 99.9 1.1E-22 2.4E-27 184.6 18.7 152 220-387 91-255 (335)
67 PRK05749 3-deoxy-D-manno-octul 99.9 6.7E-21 1.4E-25 182.6 29.3 269 48-386 60-351 (425)
68 cd01635 Glycosyltransferase_GT 99.9 9.2E-21 2E-25 165.4 22.0 105 274-388 109-214 (229)
69 cd03785 GT1_MurG MurG is an N- 99.9 1.1E-20 2.4E-25 176.6 21.6 261 48-386 10-279 (350)
70 PRK00726 murG undecaprenyldiph 99.9 1.3E-20 2.8E-25 176.5 20.5 271 35-386 2-279 (357)
71 TIGR02400 trehalose_OtsA alpha 99.9 1.3E-20 2.9E-25 179.5 20.8 220 139-387 125-391 (456)
72 KOG0853 Glycosyltransferase [C 99.9 9.7E-21 2.1E-25 175.8 17.1 325 33-388 33-398 (495)
73 cd03788 GT1_TPS Trehalose-6-Ph 99.9 8.7E-21 1.9E-25 182.2 16.9 220 140-387 131-396 (460)
74 cd04950 GT1_like_1 Glycosyltra 99.9 7.9E-20 1.7E-24 172.0 23.1 154 213-387 145-310 (373)
75 PRK13609 diacylglycerol glucos 99.9 4.3E-20 9.4E-25 174.4 20.9 284 33-386 3-300 (380)
76 TIGR01133 murG undecaprenyldip 99.9 2.1E-20 4.5E-25 174.6 18.5 271 35-387 1-278 (348)
77 cd03793 GT1_Glycogen_synthase_ 99.8 4E-19 8.7E-24 168.4 24.2 243 138-387 146-506 (590)
78 COG0297 GlgA Glycogen synthase 99.8 4.9E-18 1.1E-22 160.4 26.1 319 40-388 10-401 (487)
79 PF00534 Glycos_transf_1: Glyc 99.8 6.5E-19 1.4E-23 147.4 12.1 112 267-388 13-125 (172)
80 PLN03063 alpha,alpha-trehalose 99.8 3.3E-18 7.2E-23 173.0 18.3 220 139-387 145-411 (797)
81 PLN02605 monogalactosyldiacylg 99.8 1.5E-17 3.3E-22 156.9 20.4 156 217-387 146-310 (382)
82 PRK13608 diacylglycerol glucos 99.8 3.4E-17 7.3E-22 154.9 20.7 149 219-387 145-301 (391)
83 PRK14501 putative bifunctional 99.7 3.2E-17 7E-22 166.0 16.4 220 139-387 131-398 (726)
84 TIGR02398 gluc_glyc_Psyn gluco 99.7 6.9E-16 1.5E-20 146.5 19.8 144 244-387 248-417 (487)
85 KOG2941 Beta-1,4-mannosyltrans 99.7 1.2E-14 2.6E-19 126.8 24.7 314 31-388 10-374 (444)
86 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 7.2E-15 1.6E-19 138.0 21.2 152 219-387 139-304 (363)
87 TIGR00236 wecB UDP-N-acetylglu 99.6 3.2E-14 7E-19 133.7 21.8 149 221-385 141-299 (365)
88 COG0438 RfaG Glycosyltransfera 99.6 3.8E-14 8.3E-19 131.0 19.9 158 221-388 150-309 (381)
89 PRK09814 beta-1,6-galactofuran 99.6 7.5E-14 1.6E-18 129.2 19.6 143 213-387 115-268 (333)
90 PRK00025 lpxB lipid-A-disaccha 99.6 3.2E-14 6.8E-19 134.5 16.3 201 126-385 71-286 (380)
91 TIGR00215 lpxB lipid-A-disacch 99.6 3.2E-13 6.9E-18 127.2 19.9 204 126-385 75-292 (385)
92 PF13692 Glyco_trans_1_4: Glyc 99.5 2.3E-14 4.9E-19 114.7 8.8 100 269-387 2-103 (135)
93 PF13439 Glyco_transf_4: Glyco 99.5 2.2E-13 4.8E-18 113.8 12.5 176 37-259 1-177 (177)
94 PLN03064 alpha,alpha-trehalose 99.4 6.9E-12 1.5E-16 127.0 18.9 216 139-383 229-492 (934)
95 TIGR03713 acc_sec_asp1 accesso 99.4 6.3E-12 1.4E-16 121.7 15.0 153 219-384 270-456 (519)
96 PF05693 Glycogen_syn: Glycoge 99.4 5.7E-11 1.2E-15 112.8 20.3 174 213-387 213-501 (633)
97 PF13579 Glyco_trans_4_4: Glyc 99.2 6.8E-11 1.5E-15 96.9 10.6 156 48-252 1-160 (160)
98 COG0707 MurG UDP-N-acetylgluco 99.2 5.8E-09 1.3E-13 96.2 22.5 261 48-384 11-277 (357)
99 TIGR02919 accessory Sec system 99.2 3E-10 6.6E-15 107.5 14.1 142 220-387 238-379 (438)
100 TIGR02094 more_P_ylases alpha- 99.2 3.6E-09 7.7E-14 104.0 20.7 174 213-386 254-510 (601)
101 COG1519 KdtA 3-deoxy-D-manno-o 99.1 2.6E-08 5.7E-13 91.0 23.0 264 49-384 60-347 (419)
102 COG3914 Spy Predicted O-linked 99.1 6.3E-08 1.4E-12 91.1 24.5 277 28-385 253-537 (620)
103 TIGR03492 conserved hypothetic 99.1 3.3E-08 7.1E-13 93.5 21.2 294 46-386 5-322 (396)
104 TIGR03590 PseG pseudaminic aci 99.0 5E-08 1.1E-12 87.8 20.2 96 269-385 171-266 (279)
105 PF13528 Glyco_trans_1_3: Glyc 99.0 3.6E-08 7.9E-13 90.8 19.9 268 35-385 1-276 (318)
106 PRK12446 undecaprenyldiphospho 99.0 3.7E-08 8.1E-13 91.7 19.1 250 54-385 18-278 (352)
107 PF09314 DUF1972: Domain of un 99.0 1.9E-08 4.2E-13 83.2 14.9 174 36-254 3-185 (185)
108 PRK10117 trehalose-6-phosphate 99.0 9.2E-09 2E-13 97.3 13.4 213 139-380 121-376 (474)
109 cd04299 GT1_Glycogen_Phosphory 99.0 1E-07 2.3E-12 95.7 20.9 117 270-386 479-599 (778)
110 PF00982 Glyco_transf_20: Glyc 98.9 3E-08 6.5E-13 95.0 15.2 215 139-381 139-398 (474)
111 COG0380 OtsA Trehalose-6-phosp 98.8 2E-07 4.4E-12 88.0 16.6 210 142-379 149-402 (486)
112 PLN02205 alpha,alpha-trehalose 98.8 1.9E-07 4.1E-12 95.6 15.7 214 139-380 198-460 (854)
113 TIGR00661 MJ1255 conserved hyp 98.6 1.8E-05 3.9E-10 73.0 22.0 47 335-386 228-274 (321)
114 PF02684 LpxB: Lipid-A-disacch 98.5 9.9E-06 2.1E-10 75.1 16.3 145 220-385 132-285 (373)
115 PF04007 DUF354: Protein of un 98.4 0.0001 2.2E-09 67.5 21.0 260 35-387 1-275 (335)
116 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 0.00018 3.9E-09 67.4 22.9 210 130-386 83-307 (365)
117 cd03784 GT1_Gtf_like This fami 98.4 6.9E-05 1.5E-09 71.4 20.1 89 267-385 238-330 (401)
118 PRK02797 4-alpha-L-fucosyltran 98.3 0.00022 4.7E-09 63.3 19.8 170 206-386 83-257 (322)
119 PF07429 Glyco_transf_56: 4-al 98.2 0.00015 3.3E-09 65.1 17.2 168 208-386 124-296 (360)
120 PF08323 Glyco_transf_5: Starc 98.2 1.1E-05 2.3E-10 71.3 9.7 189 36-239 1-233 (245)
121 KOG3742 Glycogen synthase [Car 98.2 2.8E-06 6.1E-11 77.5 5.6 180 205-387 238-532 (692)
122 TIGR01426 MGT glycosyltransfer 98.1 0.00039 8.5E-09 66.1 20.0 45 334-385 273-317 (392)
123 PRK10017 colanic acid biosynth 98.1 0.001 2.2E-08 63.3 21.9 301 35-385 1-352 (426)
124 COG0763 LpxB Lipid A disacchar 98.1 5.1E-05 1.1E-09 69.1 11.7 146 219-385 134-289 (381)
125 PF13477 Glyco_trans_4_2: Glyc 98.1 0.00011 2.4E-09 58.6 12.7 126 51-229 10-139 (139)
126 PHA03392 egt ecdysteroid UDP-g 98.1 0.00065 1.4E-08 66.4 20.0 87 269-385 297-390 (507)
127 PRK01021 lpxB lipid-A-disaccha 98.0 0.00063 1.4E-08 66.3 18.9 142 220-385 360-513 (608)
128 PF13844 Glyco_transf_41: Glyc 98.0 4.9E-05 1.1E-09 72.0 10.6 107 267-385 283-390 (468)
129 PF02350 Epimerase_2: UDP-N-ac 97.9 0.00012 2.6E-09 68.0 12.1 150 218-385 119-283 (346)
130 PF12000 Glyco_trans_4_3: Gkyc 97.9 0.0003 6.5E-09 57.6 12.6 106 138-258 64-170 (171)
131 KOG4626 O-linked N-acetylgluco 97.8 0.0033 7.2E-08 60.5 18.3 106 267-384 757-863 (966)
132 COG4671 Predicted glycosyl tra 97.7 0.014 3E-07 52.7 20.2 151 215-384 161-319 (400)
133 cd03789 GT1_LPS_heptosyltransf 97.6 0.011 2.5E-07 53.2 19.7 96 272-384 125-222 (279)
134 PRK10422 lipopolysaccharide co 97.6 0.014 3E-07 54.6 19.8 101 269-384 184-286 (352)
135 PF12038 DUF3524: Domain of un 97.5 0.0015 3.3E-08 52.5 10.8 79 136-238 55-136 (168)
136 COG1817 Uncharacterized protei 97.5 0.044 9.6E-07 48.7 20.4 252 50-388 12-280 (346)
137 COG0859 RfaF ADP-heptose:LPS h 97.5 0.025 5.5E-07 52.4 19.9 98 269-385 176-276 (334)
138 COG3980 spsG Spore coat polysa 97.4 0.0064 1.4E-07 53.1 14.1 88 270-381 160-248 (318)
139 TIGR02201 heptsyl_trn_III lipo 97.3 0.048 1E-06 50.8 19.4 100 270-384 183-284 (344)
140 PRK10964 ADP-heptose:LPS hepto 97.2 0.11 2.3E-06 47.9 21.0 96 270-384 180-277 (322)
141 TIGR03609 S_layer_CsaB polysac 97.2 0.17 3.6E-06 46.1 23.1 152 213-386 119-276 (298)
142 TIGR02195 heptsyl_trn_II lipop 97.2 0.14 3E-06 47.5 21.2 98 269-384 175-275 (334)
143 COG1819 Glycosyl transferases, 97.1 0.039 8.4E-07 52.5 17.4 88 269-384 238-325 (406)
144 PRK14089 ipid-A-disaccharide s 97.1 0.0033 7.1E-08 58.2 9.5 132 221-385 127-260 (347)
145 PF04464 Glyphos_transf: CDP-G 97.1 0.037 8E-07 52.1 16.7 144 218-385 131-294 (369)
146 TIGR02193 heptsyl_trn_I lipopo 97.0 0.11 2.4E-06 47.7 18.8 98 268-384 179-278 (319)
147 PLN03007 UDP-glucosyltransfera 97.0 0.4 8.7E-06 46.8 24.0 46 335-385 344-389 (482)
148 PLN02448 UDP-glycosyltransfera 96.9 0.43 9.2E-06 46.4 23.3 45 336-385 323-367 (459)
149 COG0381 WecB UDP-N-acetylgluco 96.9 0.38 8.2E-06 44.5 23.0 151 219-386 143-307 (383)
150 PF13524 Glyco_trans_1_2: Glyc 96.7 0.0018 3.9E-08 47.5 3.3 30 358-387 1-30 (92)
151 COG4641 Uncharacterized protei 96.5 0.11 2.4E-06 47.5 14.2 146 225-387 142-295 (373)
152 PRK10916 ADP-heptose:LPS hepto 96.5 0.72 1.6E-05 43.0 21.5 98 270-384 182-285 (348)
153 PF04413 Glycos_transf_N: 3-De 96.2 0.15 3.3E-06 42.8 12.5 146 49-251 32-179 (186)
154 PF04101 Glyco_tran_28_C: Glyc 96.0 0.0009 2E-08 55.3 -2.0 43 336-384 55-97 (167)
155 COG3660 Predicted nucleoside-d 95.9 1 2.2E-05 39.3 16.5 106 267-384 160-270 (329)
156 KOG1050 Trehalose-6-phosphate 95.7 0.17 3.6E-06 51.4 12.5 135 244-379 239-396 (732)
157 PF06258 Mito_fiss_Elm1: Mitoc 95.6 0.15 3.2E-06 46.6 10.7 106 267-385 145-255 (311)
158 PF00343 Phosphorylase: Carboh 95.2 0.6 1.3E-05 47.0 14.2 118 267-386 442-575 (713)
159 COG2327 WcaK Polysaccharide py 95.0 3.2 6.8E-05 38.8 24.4 159 209-385 140-310 (385)
160 PF10087 DUF2325: Uncharacteri 94.8 0.076 1.7E-06 39.3 5.4 74 307-387 2-83 (97)
161 PF08660 Alg14: Oligosaccharid 94.5 0.71 1.5E-05 38.1 10.8 110 48-166 8-126 (170)
162 PRK14986 glycogen phosphorylas 94.1 0.41 8.9E-06 48.9 10.3 120 267-386 541-674 (815)
163 TIGR02093 P_ylase glycogen/sta 94.1 0.23 4.9E-06 50.5 8.4 118 267-386 525-658 (794)
164 PF01075 Glyco_transf_9: Glyco 94.1 0.51 1.1E-05 41.5 10.0 102 267-384 104-207 (247)
165 COG0058 GlgP Glucan phosphoryl 94.0 0.49 1.1E-05 47.8 10.3 119 268-386 486-609 (750)
166 PF04230 PS_pyruv_trans: Polys 93.9 4.3 9.3E-05 35.8 15.8 159 214-387 120-284 (286)
167 cd04300 GT1_Glycogen_Phosphory 93.6 0.66 1.4E-05 47.5 10.7 120 267-386 528-661 (797)
168 PF05159 Capsule_synth: Capsul 93.4 0.88 1.9E-05 40.7 10.3 86 283-386 138-225 (269)
169 PF00862 Sucrose_synth: Sucros 93.3 0.62 1.3E-05 44.6 9.2 116 48-170 296-433 (550)
170 PF15024 Glyco_transf_18: Glyc 93.1 0.68 1.5E-05 45.0 9.4 83 279-386 288-371 (559)
171 PRK14985 maltodextrin phosphor 90.7 0.95 2.1E-05 46.2 7.8 118 267-386 527-660 (798)
172 COG2984 ABC-type uncharacteriz 90.5 12 0.00026 33.9 13.6 157 215-387 82-247 (322)
173 PF04392 ABC_sub_bind: ABC tra 88.3 5.7 0.00012 36.0 10.5 157 215-386 53-218 (294)
174 KOG3339 Predicted glycosyltran 87.7 12 0.00026 30.9 10.5 123 14-149 13-141 (211)
175 PF00201 UDPGT: UDP-glucoronos 87.5 1.3 2.8E-05 43.6 6.2 91 269-385 277-367 (500)
176 PF06925 MGDG_synth: Monogalac 87.4 2.4 5.3E-05 34.8 6.9 33 220-252 136-168 (169)
177 PLN02992 coniferyl-alcohol glu 85.8 37 0.0008 33.2 23.0 45 336-385 338-382 (481)
178 PLN02863 UDP-glucoronosyl/UDP- 85.1 5.9 0.00013 38.7 9.1 43 336-385 343-387 (477)
179 PF12273 RCR: Chitin synthesis 84.0 0.95 2E-05 35.5 2.7 26 8-33 4-29 (130)
180 PLN03004 UDP-glycosyltransfera 83.6 5.4 0.00012 38.6 8.1 45 336-385 334-378 (451)
181 PRK13398 3-deoxy-7-phosphohept 83.2 32 0.0007 30.7 12.2 105 272-386 28-141 (266)
182 TIGR02990 ectoine_eutA ectoine 82.8 9.7 0.00021 33.4 8.7 46 341-387 162-214 (239)
183 PF01113 DapB_N: Dihydrodipico 82.5 1.6 3.5E-05 33.8 3.4 41 347-387 59-99 (124)
184 cd03146 GAT1_Peptidase_E Type 81.0 15 0.00033 31.5 9.2 81 303-386 30-121 (212)
185 PLN02534 UDP-glycosyltransfera 81.0 59 0.0013 31.9 28.3 45 336-385 344-388 (491)
186 TIGR02069 cyanophycinase cyano 80.6 29 0.00062 30.7 10.9 98 283-387 12-124 (250)
187 PF12996 DUF3880: DUF based on 80.5 5.3 0.00012 28.1 5.2 60 219-280 16-78 (79)
188 TIGR03682 arCOG04112 arCOG0411 80.2 7.2 0.00016 35.6 7.2 60 304-365 213-272 (308)
189 PF08288 PIGA: PIGA (GPI ancho 79.9 4.2 9.2E-05 29.1 4.3 73 92-170 7-84 (90)
190 PF11997 DUF3492: Domain of un 79.5 15 0.00033 32.7 9.0 86 140-239 172-263 (268)
191 PLN02764 glycosyltransferase f 79.2 16 0.00034 35.4 9.5 103 267-385 256-361 (453)
192 PLN02562 UDP-glycosyltransfera 78.3 17 0.00038 35.2 9.6 46 335-385 327-372 (448)
193 cd03129 GAT1_Peptidase_E_like 78.3 32 0.00069 29.3 10.4 84 303-387 28-122 (210)
194 PLN00164 glucosyltransferase; 77.6 75 0.0016 31.2 27.7 44 337-385 340-383 (480)
195 COG3473 Maleate cis-trans isom 77.5 24 0.00051 29.9 8.6 54 333-387 153-212 (238)
196 PLN02207 UDP-glycosyltransfera 77.3 9.7 0.00021 37.1 7.5 46 335-385 331-376 (468)
197 PLN02152 indole-3-acetate beta 76.8 11 0.00023 36.7 7.6 46 335-385 326-371 (455)
198 TIGR00272 DPH2 diphthamide bio 75.3 11 0.00024 36.8 7.4 78 304-385 282-359 (496)
199 PLN02410 UDP-glucoronosyl/UDP- 75.0 24 0.00052 34.2 9.6 44 335-385 323-368 (451)
200 PLN02167 UDP-glycosyltransfera 74.6 12 0.00025 36.6 7.4 43 336-385 340-384 (475)
201 PF00205 TPP_enzyme_M: Thiamin 74.4 9 0.0002 30.1 5.6 57 304-362 12-84 (137)
202 PLN02210 UDP-glucosyl transfer 74.2 90 0.0019 30.4 26.3 45 336-385 324-368 (456)
203 PF00185 OTCace: Aspartate/orn 74.0 12 0.00027 30.3 6.4 79 270-365 3-83 (158)
204 cd03145 GAT1_cyanophycinase Ty 73.7 58 0.0013 28.0 10.8 82 303-386 28-124 (217)
205 PLN00414 glycosyltransferase f 73.0 37 0.0008 32.9 10.3 101 269-385 253-356 (446)
206 PLN02173 UDP-glucosyl transfer 72.9 28 0.0006 33.8 9.4 45 336-385 317-361 (449)
207 PRK10494 hypothetical protein; 72.9 26 0.00057 31.1 8.6 95 285-385 107-207 (259)
208 COG1692 Calcineurin-like phosp 72.1 29 0.00062 30.3 8.1 87 271-364 2-90 (266)
209 PLN02670 transferase, transfer 71.8 17 0.00036 35.5 7.6 44 337-385 340-383 (472)
210 PLN02208 glycosyltransferase f 71.7 37 0.00079 32.9 9.9 103 269-385 252-355 (442)
211 TIGR01768 GGGP-family geranylg 70.9 13 0.00029 32.0 6.0 76 277-365 5-81 (223)
212 PLN02555 limonoid glucosyltran 70.4 37 0.0008 33.2 9.7 46 335-385 336-381 (480)
213 KOG1192 UDP-glucuronosyl and U 69.8 12 0.00025 36.7 6.3 39 33-77 5-43 (496)
214 KOG0832 Mitochondrial/chloropl 69.4 24 0.00052 30.3 7.0 93 270-384 109-201 (251)
215 PLN02554 UDP-glycosyltransfera 69.2 14 0.0003 36.2 6.6 41 34-77 2-42 (481)
216 PRK13397 3-deoxy-7-phosphohept 68.4 78 0.0017 27.9 10.3 96 281-386 25-129 (250)
217 TIGR00322 diphth2_R diphthamid 68.3 19 0.0004 33.4 6.8 61 304-365 233-293 (332)
218 cd05565 PTS_IIB_lactose PTS_II 68.3 15 0.00031 27.3 5.0 75 307-386 4-79 (99)
219 COG0036 Rpe Pentose-5-phosphat 68.2 40 0.00086 29.0 8.1 75 282-369 71-145 (220)
220 PRK10834 vancomycin high tempe 68.0 17 0.00036 31.8 6.0 95 285-386 68-168 (239)
221 PRK05282 (alpha)-aspartyl dipe 66.9 87 0.0019 27.3 11.0 80 304-387 31-121 (233)
222 PRK05447 1-deoxy-D-xylulose 5- 66.3 60 0.0013 30.6 9.7 92 270-386 28-122 (385)
223 KOG2648 Diphthamide biosynthes 65.6 26 0.00056 33.3 7.1 78 304-382 267-354 (453)
224 PRK02261 methylaspartate mutas 65.5 51 0.0011 26.0 7.9 102 245-355 31-132 (137)
225 cd05564 PTS_IIB_chitobiose_lic 65.3 18 0.00039 26.5 5.0 74 307-386 3-78 (96)
226 KOG1021 Acetylglucosaminyltran 65.3 20 0.00043 34.9 6.7 41 346-386 334-375 (464)
227 TIGR00853 pts-lac PTS system, 63.1 13 0.00028 27.3 3.9 74 307-386 7-82 (95)
228 PF01102 Glycophorin_A: Glycop 61.9 11 0.00024 29.0 3.4 25 8-32 70-94 (122)
229 PRK13396 3-deoxy-7-phosphohept 61.6 1.4E+02 0.003 27.9 12.1 104 272-386 103-215 (352)
230 PF13407 Peripla_BP_4: Peripla 61.5 43 0.00092 29.2 7.8 32 356-387 56-88 (257)
231 TIGR01361 DAHP_synth_Bsub phos 60.8 1.1E+02 0.0023 27.2 10.0 102 275-386 29-139 (260)
232 TIGR01012 Sa_S2_E_A ribosomal 60.1 77 0.0017 26.8 8.4 92 281-384 43-136 (196)
233 PRK04020 rps2P 30S ribosomal p 59.8 51 0.0011 28.1 7.3 91 281-384 49-142 (204)
234 cd01967 Nitrogenase_MoFe_alpha 59.5 52 0.0011 31.3 8.5 101 280-386 134-238 (406)
235 PF05393 Hum_adeno_E3A: Human 58.3 14 0.0003 26.2 3.1 30 5-34 32-64 (94)
236 PF10933 DUF2827: Protein of u 58.2 1.6E+02 0.0035 27.4 13.9 205 140-385 73-300 (364)
237 PF01866 Diphthamide_syn: Puta 57.7 12 0.00027 34.1 3.7 77 304-384 210-286 (307)
238 cd05312 NAD_bind_1_malic_enz N 57.7 72 0.0016 28.6 8.2 39 347-385 95-138 (279)
239 PF13433 Peripla_BP_5: Peripla 57.4 63 0.0014 30.2 8.1 79 286-368 23-104 (363)
240 TIGR01088 aroQ 3-dehydroquinat 57.3 52 0.0011 26.0 6.4 61 321-383 29-95 (141)
241 PF06189 5-nucleotidase: 5'-nu 57.2 48 0.001 29.3 6.8 86 287-382 19-105 (264)
242 PRK13015 3-dehydroquinate dehy 57.0 40 0.00086 26.8 5.8 59 323-383 33-97 (146)
243 PF03435 Saccharop_dh: Sacchar 56.9 50 0.0011 31.2 7.8 73 303-385 21-97 (386)
244 PF00389 2-Hacid_dh: D-isomer 56.5 79 0.0017 24.5 7.7 48 337-386 20-67 (133)
245 PRK00048 dihydrodipicolinate r 56.3 13 0.00029 32.9 3.5 40 347-386 52-91 (257)
246 PF13844 Glyco_transf_41: Glyc 56.2 1E+02 0.0022 30.0 9.6 103 35-166 1-105 (468)
247 PRK10481 hypothetical protein; 55.9 1.4E+02 0.003 25.9 9.7 92 279-387 114-214 (224)
248 TIGR03141 cytochro_ccmD heme e 55.6 20 0.00043 22.1 3.2 10 1-10 1-10 (45)
249 TIGR00460 fmt methionyl-tRNA f 55.5 80 0.0017 28.9 8.6 96 271-380 2-103 (313)
250 PRK05395 3-dehydroquinate dehy 55.0 47 0.001 26.5 5.9 59 323-383 33-97 (146)
251 cd00316 Oxidoreductase_nitroge 54.9 47 0.001 31.5 7.3 100 281-385 127-230 (399)
252 cd03174 DRE_TIM_metallolyase D 54.5 1.5E+02 0.0033 26.0 11.5 97 283-384 113-220 (265)
253 PF15330 SIT: SHP2-interacting 54.1 12 0.00025 28.2 2.3 8 27-34 23-30 (107)
254 COG1703 ArgK Putative periplas 54.1 1.7E+02 0.0038 26.6 10.4 105 29-149 46-153 (323)
255 cd01425 RPS2 Ribosomal protein 54.1 1.3E+02 0.0029 25.2 9.7 32 353-385 125-156 (193)
256 PF01012 ETF: Electron transfe 53.8 35 0.00075 27.7 5.4 92 285-385 18-120 (164)
257 TIGR01769 GGGP geranylgeranylg 53.6 64 0.0014 27.5 7.0 75 277-365 4-79 (205)
258 PRK02255 putrescine carbamoylt 53.4 74 0.0016 29.5 8.0 79 269-365 154-232 (338)
259 PF03575 Peptidase_S51: Peptid 53.0 14 0.00031 29.7 2.9 64 321-386 1-76 (154)
260 TIGR00658 orni_carb_tr ornithi 52.8 95 0.0021 28.3 8.5 77 270-364 149-225 (304)
261 COG1056 NadR Nicotinamide mono 52.7 89 0.0019 25.8 7.4 58 270-335 4-69 (172)
262 PF14990 DUF4516: Domain of un 52.6 23 0.0005 22.0 3.0 24 7-31 10-33 (47)
263 PF03016 Exostosin: Exostosin 51.9 18 0.00038 32.7 3.7 41 346-386 227-268 (302)
264 PRK06988 putative formyltransf 51.2 86 0.0019 28.7 8.0 96 271-380 4-102 (312)
265 cd00466 DHQase_II Dehydroquina 51.2 48 0.001 26.2 5.4 59 323-383 31-95 (140)
266 PLN03015 UDP-glucosyl transfer 51.0 77 0.0017 30.9 8.0 43 338-385 337-379 (470)
267 PF02951 GSH-S_N: Prokaryotic 50.9 30 0.00066 26.6 4.2 39 35-76 1-40 (119)
268 PF05014 Nuc_deoxyrib_tr: Nucl 50.8 35 0.00076 25.7 4.7 38 350-387 56-97 (113)
269 cd01971 Nitrogenase_VnfN_like 50.5 1E+02 0.0022 29.7 8.8 103 280-386 131-238 (427)
270 PF01220 DHquinase_II: Dehydro 50.0 49 0.0011 26.2 5.3 62 320-383 29-96 (140)
271 cd01574 PBP1_LacI Ligand-bindi 50.0 1.1E+02 0.0024 26.6 8.5 22 285-311 15-36 (264)
272 PRK00207 sulfur transfer compl 49.6 35 0.00076 26.6 4.5 33 35-67 1-33 (128)
273 PRK04169 geranylgeranylglycery 49.6 63 0.0014 28.2 6.5 78 273-365 9-86 (232)
274 PRK03515 ornithine carbamoyltr 49.2 1.1E+02 0.0025 28.3 8.5 79 269-364 156-234 (336)
275 PRK04284 ornithine carbamoyltr 49.1 1.3E+02 0.0027 27.9 8.8 79 269-364 155-233 (332)
276 COG3613 Nucleoside 2-deoxyribo 48.1 69 0.0015 26.3 6.0 84 304-387 4-106 (172)
277 PRK12562 ornithine carbamoyltr 47.9 1.3E+02 0.0029 27.8 8.7 79 269-364 156-234 (334)
278 COG1736 DPH2 Diphthamide synth 46.6 63 0.0014 30.0 6.3 77 305-385 239-315 (347)
279 TIGR00036 dapB dihydrodipicoli 46.5 22 0.00048 31.7 3.4 33 354-386 67-99 (266)
280 TIGR00640 acid_CoA_mut_C methy 46.1 1.1E+02 0.0024 23.9 6.9 96 244-355 29-125 (132)
281 COG1879 RbsB ABC-type sugar tr 46.1 1E+02 0.0022 28.1 7.8 34 354-387 90-124 (322)
282 TIGR01658 EYA-cons_domain eyes 45.6 37 0.00081 29.6 4.3 37 288-335 216-252 (274)
283 PF09949 DUF2183: Uncharacteri 45.5 79 0.0017 23.4 5.6 42 288-339 52-93 (100)
284 TIGR01283 nifE nitrogenase mol 45.3 2.1E+02 0.0046 27.8 10.2 159 219-384 96-273 (456)
285 PRK02910 light-independent pro 45.3 1.6E+02 0.0034 29.3 9.4 78 304-384 158-238 (519)
286 PRK01713 ornithine carbamoyltr 45.1 1.3E+02 0.0029 27.8 8.3 79 269-364 156-234 (334)
287 PRK00005 fmt methionyl-tRNA fo 44.9 1.7E+02 0.0036 26.7 8.9 54 324-379 47-102 (309)
288 PRK08883 ribulose-phosphate 3- 44.8 1.3E+02 0.0028 25.9 7.7 75 283-370 69-143 (220)
289 PRK05380 pyrG CTP synthetase; 44.3 1.8E+02 0.0039 28.8 9.3 97 289-385 273-378 (533)
290 PRK08673 3-deoxy-7-phosphohept 43.9 2.7E+02 0.0058 25.8 11.0 102 275-386 97-207 (335)
291 cd02071 MM_CoA_mut_B12_BD meth 43.6 1E+02 0.0022 23.6 6.3 95 245-354 27-121 (122)
292 TIGR00075 hypD hydrogenase exp 43.5 2.8E+02 0.0061 26.0 9.8 83 303-387 135-226 (369)
293 cd00762 NAD_bind_malic_enz NAD 43.3 70 0.0015 28.3 5.8 39 347-385 96-139 (254)
294 PRK02102 ornithine carbamoyltr 43.3 1.6E+02 0.0034 27.3 8.4 80 268-364 154-233 (331)
295 cd00027 BRCT Breast Cancer Sup 43.0 64 0.0014 20.9 4.7 65 305-387 2-66 (72)
296 COG3340 PepE Peptidase E [Amin 42.9 2.2E+02 0.0047 24.5 9.9 75 314-388 43-127 (224)
297 PF10649 DUF2478: Protein of u 42.8 38 0.00082 27.5 3.8 35 351-385 88-129 (159)
298 PLN02285 methionyl-tRNA formyl 42.4 2.1E+02 0.0045 26.5 9.2 106 269-380 6-118 (334)
299 PF12273 RCR: Chitin synthesis 42.2 13 0.00027 29.1 1.0 27 9-36 2-29 (130)
300 PTZ00408 NAD-dependent deacety 42.2 1.2E+02 0.0025 26.7 7.1 54 334-387 149-207 (242)
301 PF01531 Glyco_transf_11: Glyc 42.1 2.1E+02 0.0045 25.9 9.1 65 283-362 189-254 (298)
302 COG1646 Predicted phosphate-bi 42.0 88 0.0019 27.1 6.0 54 304-364 41-95 (240)
303 PRK15408 autoinducer 2-binding 41.8 89 0.0019 28.9 6.7 33 355-387 80-113 (336)
304 COG3114 CcmD Heme exporter pro 41.8 42 0.00092 22.3 3.1 21 1-24 12-32 (67)
305 PF02670 DXP_reductoisom: 1-de 41.7 1.7E+02 0.0037 22.9 10.1 91 269-383 24-118 (129)
306 PRK13125 trpA tryptophan synth 41.4 2.3E+02 0.005 24.8 9.0 80 281-370 87-166 (244)
307 PRK08745 ribulose-phosphate 3- 41.0 1.7E+02 0.0036 25.4 7.8 48 322-369 99-146 (223)
308 TIGR01501 MthylAspMutase methy 41.0 1.8E+02 0.0038 22.9 8.3 102 245-355 29-130 (134)
309 PF01884 PcrB: PcrB family; I 40.7 91 0.002 27.1 6.0 76 273-365 9-85 (230)
310 PRK06849 hypothetical protein; 40.7 48 0.001 31.4 4.9 37 32-77 2-38 (389)
311 PF00731 AIRC: AIR carboxylase 40.6 1.9E+02 0.0042 23.2 8.0 14 372-385 99-112 (150)
312 TIGR01167 LPXTG_anchor LPXTG-m 40.6 46 0.001 18.7 3.0 9 18-26 19-27 (34)
313 PRK08125 bifunctional UDP-gluc 40.5 1.6E+02 0.0035 30.2 8.9 96 272-381 3-101 (660)
314 PRK11858 aksA trans-homoaconit 40.0 3.3E+02 0.0071 25.7 10.3 65 318-383 143-217 (378)
315 cd01965 Nitrogenase_MoFe_beta_ 40.0 2.8E+02 0.006 26.7 10.0 101 281-386 132-252 (428)
316 PRK12862 malic enzyme; Reviewe 39.5 1.1E+02 0.0023 32.0 7.3 37 348-385 254-290 (763)
317 cd07382 MPP_DR1281 Deinococcus 39.4 1.1E+02 0.0023 27.2 6.5 87 271-364 1-89 (255)
318 PRK08005 epimerase; Validated 38.6 2.1E+02 0.0044 24.6 7.8 48 322-369 95-142 (210)
319 PRK10310 PTS system galactitol 38.3 80 0.0017 23.0 4.7 54 307-364 6-59 (94)
320 TIGR01278 DPOR_BchB light-inde 38.2 2.3E+02 0.0049 28.1 9.3 78 304-384 158-238 (511)
321 PRK15395 methyl-galactoside AB 37.9 96 0.0021 28.5 6.3 58 11-75 6-63 (330)
322 PF10093 DUF2331: Uncharacteri 37.7 2.1E+02 0.0045 27.0 8.3 42 337-383 245-286 (374)
323 PRK09271 flavodoxin; Provision 37.7 57 0.0012 26.4 4.2 35 35-73 1-35 (160)
324 COG0673 MviM Predicted dehydro 37.6 1E+02 0.0022 28.3 6.5 53 324-385 42-97 (342)
325 COG0300 DltE Short-chain dehyd 37.6 2.3E+02 0.005 25.2 8.2 22 54-77 19-40 (265)
326 TIGR03316 ygeW probable carbam 37.6 1.8E+02 0.004 27.2 8.0 64 285-364 191-254 (357)
327 PF00763 THF_DHG_CYH: Tetrahyd 37.6 1.5E+02 0.0032 22.6 6.3 52 303-356 30-82 (117)
328 PTZ00254 40S ribosomal protein 37.3 1.2E+02 0.0027 26.6 6.3 93 281-384 52-146 (249)
329 TIGR01319 glmL_fam conserved h 37.3 2.1E+02 0.0045 27.8 8.3 54 269-333 121-174 (463)
330 PRK04207 glyceraldehyde-3-phos 37.1 1E+02 0.0022 28.7 6.3 39 349-387 72-110 (341)
331 COG4635 HemG Flavodoxin [Energ 37.0 57 0.0012 26.5 3.9 35 35-73 1-35 (175)
332 PRK12595 bifunctional 3-deoxy- 36.8 3.6E+02 0.0079 25.3 11.9 95 282-386 129-232 (360)
333 COG0159 TrpA Tryptophan syntha 36.6 2.2E+02 0.0048 25.4 7.8 78 270-361 97-175 (265)
334 PRK10355 xylF D-xylose transpo 36.4 1.3E+02 0.0029 27.5 7.1 61 10-77 5-65 (330)
335 cd07940 DRE_TIM_IPMS 2-isoprop 36.2 3.1E+02 0.0067 24.3 10.1 95 283-384 112-219 (268)
336 TIGR01915 npdG NADPH-dependent 36.2 63 0.0014 27.7 4.5 33 35-76 1-33 (219)
337 PF03808 Glyco_tran_WecB: Glyc 36.1 2.4E+02 0.0052 23.1 7.8 106 219-342 3-108 (172)
338 cd01973 Nitrogenase_VFe_beta_l 36.0 1.7E+02 0.0036 28.5 7.8 96 281-385 141-256 (454)
339 PF07279 DUF1442: Protein of u 36.0 2.7E+02 0.0059 23.9 8.0 68 318-386 78-149 (218)
340 cd06284 PBP1_LacI_like_6 Ligan 35.9 2.8E+02 0.0062 23.8 9.3 11 374-384 72-82 (267)
341 TIGR00433 bioB biotin syntheta 35.9 2.3E+02 0.005 25.4 8.4 71 280-355 60-131 (296)
342 PRK06719 precorrin-2 dehydroge 35.8 69 0.0015 25.9 4.4 26 49-76 20-45 (157)
343 PF00070 Pyr_redox: Pyridine n 35.7 1.4E+02 0.0031 20.5 5.6 28 49-78 6-33 (80)
344 PRK09722 allulose-6-phosphate 35.7 2.5E+02 0.0054 24.4 8.0 48 322-369 97-144 (229)
345 PLN02696 1-deoxy-D-xylulose-5- 35.6 4E+02 0.0086 25.9 9.9 86 281-386 92-180 (454)
346 cd01410 SIRT7 SIRT7: Eukaryoti 35.5 1.5E+02 0.0033 25.2 6.6 53 335-387 131-190 (206)
347 COG3414 SgaB Phosphotransferas 35.0 43 0.00092 24.5 2.7 53 307-363 5-57 (93)
348 PRK05583 ribosomal protein L7A 35.0 1.9E+02 0.0041 21.5 7.3 66 304-376 33-98 (104)
349 PF02441 Flavoprotein: Flavopr 34.6 71 0.0015 24.7 4.2 36 35-76 1-36 (129)
350 PRK04531 acetylglutamate kinas 34.5 68 0.0015 30.5 4.7 53 270-337 38-91 (398)
351 PF02826 2-Hacid_dh_C: D-isome 34.5 42 0.00092 27.7 3.1 39 347-385 83-126 (178)
352 PLN02342 ornithine carbamoyltr 34.5 2.4E+02 0.0052 26.3 8.2 48 30-86 190-237 (348)
353 PRK10076 pyruvate formate lyas 34.3 3E+02 0.0065 23.6 9.1 77 282-361 19-95 (213)
354 cd01080 NAD_bind_m-THF_DH_Cycl 34.2 2.6E+02 0.0057 22.9 9.1 69 289-365 29-97 (168)
355 TIGR00262 trpA tryptophan synt 34.0 2.9E+02 0.0063 24.4 8.4 79 272-363 92-172 (256)
356 PF02606 LpxK: Tetraacyldisacc 33.9 1.6E+02 0.0035 27.1 7.0 34 42-78 41-76 (326)
357 PF03033 Glyco_transf_28: Glyc 33.9 53 0.0011 25.4 3.4 23 52-76 13-35 (139)
358 PF10727 Rossmann-like: Rossma 33.8 32 0.0007 26.7 2.1 36 31-76 7-42 (127)
359 cd04724 Tryptophan_synthase_al 33.8 3.1E+02 0.0068 23.9 8.6 65 280-357 89-154 (242)
360 cd01452 VWA_26S_proteasome_sub 33.8 2.1E+02 0.0046 24.0 7.1 53 270-329 109-161 (187)
361 cd01972 Nitrogenase_VnfE_like 33.7 1.9E+02 0.004 27.9 7.7 102 281-385 137-243 (426)
362 TIGR00288 conserved hypothetic 33.7 2.1E+02 0.0046 23.3 6.8 68 282-363 89-156 (160)
363 COG1887 TagB Putative glycosyl 33.7 4.2E+02 0.0092 25.1 12.1 147 220-385 147-311 (388)
364 PRK08091 ribulose-phosphate 3- 33.7 2.5E+02 0.0053 24.5 7.6 48 322-369 105-154 (228)
365 cd06289 PBP1_MalI_like Ligand- 33.5 3.1E+02 0.0068 23.6 9.2 12 374-385 74-85 (268)
366 COG0111 SerA Phosphoglycerate 33.5 79 0.0017 29.1 4.9 34 347-380 189-227 (324)
367 COG2102 Predicted ATPases of P 33.1 3E+02 0.0066 23.7 7.8 78 279-369 70-149 (223)
368 PLN02331 phosphoribosylglycina 33.1 3.1E+02 0.0067 23.4 8.7 60 324-384 69-137 (207)
369 cd01540 PBP1_arabinose_binding 32.9 2.4E+02 0.0052 24.8 8.0 12 375-386 75-86 (289)
370 COG2910 Putative NADH-flavin r 32.9 71 0.0015 26.8 3.9 34 35-77 1-34 (211)
371 PRK10653 D-ribose transporter 32.7 1.7E+02 0.0036 26.1 7.0 59 14-76 7-65 (295)
372 cd06306 PBP1_TorT-like TorT-li 32.7 2.4E+02 0.0052 24.6 7.9 13 372-384 74-86 (268)
373 PRK07714 hypothetical protein; 32.7 2E+02 0.0044 21.1 7.5 65 304-375 34-98 (100)
374 PF03358 FMN_red: NADPH-depend 32.4 89 0.0019 24.7 4.6 40 35-76 1-40 (152)
375 COG0078 ArgF Ornithine carbamo 32.3 3.1E+02 0.0066 25.0 8.1 50 32-90 151-200 (310)
376 COG1091 RfbD dTDP-4-dehydrorha 32.1 1.6E+02 0.0035 26.5 6.4 24 48-74 7-30 (281)
377 cd06305 PBP1_methylthioribose_ 32.1 2.5E+02 0.0054 24.4 7.9 8 304-311 29-36 (273)
378 PF01408 GFO_IDH_MocA: Oxidore 32.1 1.7E+02 0.0036 21.8 5.9 54 324-386 38-93 (120)
379 cd06295 PBP1_CelR Ligand bindi 31.9 2E+02 0.0043 25.1 7.2 21 286-311 27-47 (275)
380 PF15086 UPF0542: Uncharacteri 31.9 65 0.0014 22.1 2.9 23 2-25 18-40 (74)
381 PF03949 Malic_M: Malic enzyme 31.6 2.9E+02 0.0064 24.4 7.8 93 287-385 12-139 (255)
382 COG0062 Uncharacterized conser 31.6 1.8E+02 0.004 24.7 6.3 100 270-387 51-159 (203)
383 PRK07283 hypothetical protein; 31.5 2.1E+02 0.0046 21.0 6.8 63 304-374 34-96 (98)
384 PRK09492 treR trehalose repres 31.3 1.3E+02 0.0029 27.0 6.1 46 29-77 57-102 (315)
385 KOG0090 Signal recognition par 31.2 1E+02 0.0022 26.5 4.7 49 9-60 13-61 (238)
386 cd01538 PBP1_ABC_xylose_bindin 31.2 2.9E+02 0.0064 24.4 8.3 23 285-312 15-37 (288)
387 PF01975 SurE: Survival protei 31.1 1.3E+02 0.0027 25.5 5.3 38 35-78 1-38 (196)
388 TIGR00670 asp_carb_tr aspartat 30.8 1.8E+02 0.004 26.4 6.7 76 269-364 150-225 (301)
389 PRK15438 erythronate-4-phospha 30.7 1.7E+02 0.0037 27.6 6.7 76 303-386 115-207 (378)
390 PRK07232 bifunctional malic en 30.7 1.4E+02 0.003 31.1 6.5 38 347-385 245-282 (752)
391 KOG3107 Predicted haloacid deh 30.7 82 0.0018 29.4 4.3 69 274-358 392-465 (468)
392 TIGR02405 trehalos_R_Ecol treh 30.7 1.3E+02 0.0028 27.1 6.0 47 28-77 53-99 (311)
393 TIGR01281 DPOR_bchL light-inde 30.6 86 0.0019 27.7 4.6 36 35-77 1-38 (268)
394 PF12191 stn_TNFRSF12A: Tumour 30.6 17 0.00036 27.9 0.0 20 17-36 92-111 (129)
395 COG0757 AroQ 3-dehydroquinate 30.5 2.7E+02 0.0059 22.0 6.6 26 358-383 70-96 (146)
396 PRK13932 stationary phase surv 30.5 3.9E+02 0.0084 23.7 9.0 40 32-78 3-42 (257)
397 PRK11914 diacylglycerol kinase 30.4 1.1E+02 0.0024 27.8 5.3 39 35-76 9-48 (306)
398 KOG1160 Fe-S oxidoreductase [E 30.3 1.3E+02 0.0029 28.7 5.6 51 286-343 432-482 (601)
399 PRK12861 malic enzyme; Reviewe 30.3 1.1E+02 0.0025 31.7 5.8 38 347-385 249-286 (764)
400 cd00405 PRAI Phosphoribosylant 30.3 2.5E+02 0.0055 23.6 7.3 86 284-385 62-158 (203)
401 PRK00779 ornithine carbamoyltr 30.3 3.4E+02 0.0073 24.8 8.4 75 269-364 152-226 (304)
402 cd05566 PTS_IIB_galactitol PTS 30.1 1.5E+02 0.0033 20.9 5.1 55 307-365 4-58 (89)
403 TIGR02491 NrdG anaerobic ribon 30.1 2.9E+02 0.0062 22.1 7.8 57 306-362 66-129 (154)
404 PF00533 BRCT: BRCA1 C Terminu 30.0 46 0.001 22.5 2.3 68 302-387 6-73 (78)
405 PF08902 DUF1848: Domain of un 30.0 3.9E+02 0.0084 23.9 8.3 101 221-335 7-112 (266)
406 PF11440 AGT: DNA alpha-glucos 29.9 4.2E+02 0.0091 23.9 8.4 103 273-384 187-308 (355)
407 TIGR02090 LEU1_arch isopropylm 29.8 4.7E+02 0.01 24.5 10.2 93 284-383 111-213 (363)
408 PF01008 IF-2B: Initiation fac 29.7 2.4E+02 0.0051 25.2 7.3 97 270-385 109-216 (282)
409 PF09861 DUF2088: Domain of un 29.7 79 0.0017 26.9 3.9 34 33-66 53-86 (204)
410 cd02168 NMNAT_Nudix Nicotinami 29.5 2.2E+02 0.0048 23.7 6.5 62 272-342 2-73 (181)
411 PRK09590 celB cellobiose phosp 29.5 1.7E+02 0.0036 21.8 5.2 52 307-363 5-58 (104)
412 PRK08410 2-hydroxyacid dehydro 29.4 94 0.002 28.4 4.7 39 347-385 188-231 (311)
413 PLN02695 GDP-D-mannose-3',5'-e 29.4 86 0.0019 29.4 4.6 36 31-75 18-53 (370)
414 PRK06932 glycerate dehydrogena 29.3 88 0.0019 28.7 4.5 40 347-386 189-233 (314)
415 PF10717 ODV-E18: Occlusion-de 29.2 59 0.0013 22.9 2.5 18 11-28 29-46 (85)
416 TIGR02932 vnfK_nitrog V-contai 29.1 4.6E+02 0.01 25.5 9.6 97 281-385 144-260 (457)
417 PF12738 PTCB-BRCT: twin BRCT 29.1 1.4E+02 0.003 19.4 4.4 50 323-387 14-63 (63)
418 PF13277 YmdB: YmdB-like prote 29.1 1.1E+02 0.0024 27.0 4.7 85 273-364 1-87 (253)
419 PTZ00345 glycerol-3-phosphate 29.0 1.7E+02 0.0037 27.5 6.4 44 25-77 3-51 (365)
420 PF12669 P12: Virus attachment 29.0 69 0.0015 21.0 2.7 10 22-31 17-26 (58)
421 PF03447 NAD_binding_3: Homose 29.0 33 0.00072 25.9 1.5 40 348-387 50-91 (117)
422 PRK13527 glutamine amidotransf 29.0 2E+02 0.0042 24.2 6.3 62 318-385 12-83 (200)
423 PLN00016 RNA-binding protein; 28.9 70 0.0015 30.0 3.9 40 33-77 51-90 (378)
424 PF11238 DUF3039: Protein of u 28.9 41 0.00089 21.9 1.5 15 371-385 16-30 (58)
425 TIGR03646 YtoQ_fam YtoQ family 28.9 92 0.002 24.3 3.7 37 350-386 70-110 (144)
426 TIGR01761 thiaz-red thiazoliny 28.9 2.7E+02 0.0059 25.9 7.6 89 269-385 3-96 (343)
427 cd01408 SIRT1 SIRT1: Eukaryoti 28.8 2.1E+02 0.0045 25.0 6.5 54 334-387 150-209 (235)
428 PF13179 DUF4006: Family of un 28.7 1E+02 0.0022 20.8 3.4 24 9-32 20-43 (66)
429 PF14316 DUF4381: Domain of un 28.4 56 0.0012 26.0 2.7 30 3-32 18-48 (146)
430 PRK06756 flavodoxin; Provision 28.3 1E+02 0.0022 24.4 4.2 35 35-73 2-36 (148)
431 cd06309 PBP1_YtfQ_like Peripla 28.2 2.9E+02 0.0063 24.0 7.7 22 286-312 16-37 (273)
432 PRK13302 putative L-aspartate 28.2 1.7E+02 0.0038 26.1 6.1 69 303-386 30-98 (271)
433 PRK13602 putative ribosomal pr 28.1 2.2E+02 0.0047 20.1 7.1 44 304-354 27-70 (82)
434 cd01968 Nitrogenase_NifE_I Nit 28.0 2.7E+02 0.0059 26.5 7.8 98 281-384 133-234 (410)
435 cd06267 PBP1_LacI_sugar_bindin 27.9 3.8E+02 0.0082 22.8 8.4 8 304-311 29-36 (264)
436 KOG1192 UDP-glucuronosyl and U 27.9 86 0.0019 30.6 4.5 45 336-384 335-379 (496)
437 cd02166 NMNAT_Archaea Nicotina 27.8 3.3E+02 0.0072 22.1 7.9 22 273-294 3-25 (163)
438 TIGR01007 eps_fam capsular exo 27.7 1.2E+02 0.0027 25.4 4.9 27 49-77 30-56 (204)
439 PLN02928 oxidoreductase family 27.6 81 0.0018 29.4 4.0 40 346-385 217-261 (347)
440 PRK00257 erythronate-4-phospha 27.5 2.4E+02 0.0051 26.8 7.0 76 303-386 115-207 (381)
441 COG0796 MurI Glutamate racemas 27.5 3.5E+02 0.0076 24.2 7.6 30 31-64 2-31 (269)
442 TIGR03609 S_layer_CsaB polysac 27.5 4.5E+02 0.0098 23.5 11.4 91 275-386 4-106 (298)
443 cd02032 Bchl_like This family 27.3 1E+02 0.0023 27.2 4.6 37 35-77 1-38 (267)
444 PRK14188 bifunctional 5,10-met 27.0 3.4E+02 0.0074 24.7 7.7 67 287-356 18-85 (296)
445 cd01981 Pchlide_reductase_B Pc 27.0 1.9E+02 0.004 27.9 6.5 79 304-385 162-243 (430)
446 PF13344 Hydrolase_6: Haloacid 27.0 2.6E+02 0.0056 20.5 6.3 71 283-363 15-88 (101)
447 PF06180 CbiK: Cobalt chelatas 26.9 4.4E+02 0.0095 23.5 8.2 59 303-362 140-204 (262)
448 PLN02204 diacylglycerol kinase 26.9 2.4E+02 0.0052 28.4 7.1 38 37-77 163-200 (601)
449 CHL00200 trpA tryptophan synth 26.8 4.6E+02 0.0099 23.4 9.0 69 280-362 104-173 (263)
450 PRK06487 glycerate dehydrogena 26.8 83 0.0018 28.9 3.9 38 348-385 190-232 (317)
451 PRK08306 dipicolinate synthase 26.8 2.6E+02 0.0055 25.4 7.0 74 304-385 2-100 (296)
452 PF13241 NAD_binding_7: Putati 26.7 1.1E+02 0.0024 22.5 3.9 33 34-76 7-39 (103)
453 PRK11041 DNA-binding transcrip 26.5 1.6E+02 0.0034 26.4 5.7 47 27-76 28-74 (309)
454 TIGR02494 PFLE_PFLC glycyl-rad 26.4 4.7E+02 0.01 23.4 8.9 54 306-360 128-181 (295)
455 PRK04175 rpl7ae 50S ribosomal 26.3 3E+02 0.0066 21.1 7.8 79 282-375 33-112 (122)
456 cd01974 Nitrogenase_MoFe_beta 26.0 5.7E+02 0.012 24.6 9.6 102 280-386 135-256 (435)
457 cd06308 PBP1_sensor_kinase_lik 25.7 4.4E+02 0.0095 22.8 9.1 24 285-312 15-38 (270)
458 cd06324 PBP1_ABC_sugar_binding 25.7 3.9E+02 0.0084 23.9 8.2 11 375-385 78-88 (305)
459 PF00290 Trp_syntA: Tryptophan 25.7 4E+02 0.0086 23.7 7.7 69 280-362 100-169 (259)
460 PRK07742 phosphate butyryltran 25.7 4.7E+02 0.01 23.7 8.5 75 270-363 16-98 (299)
461 TIGR00381 cdhD CO dehydrogenas 25.6 4.6E+02 0.01 24.8 8.3 44 281-329 170-213 (389)
462 PF06189 5-nucleotidase: 5'-nu 25.6 2.3E+02 0.0049 25.2 6.0 71 285-360 167-238 (264)
463 PRK08883 ribulose-phosphate 3- 25.5 2.6E+02 0.0056 24.1 6.5 26 338-363 170-196 (220)
464 cd03466 Nitrogenase_NifN_2 Nit 25.5 6.1E+02 0.013 24.4 10.3 98 281-384 134-251 (429)
465 COG0036 Rpe Pentose-5-phosphat 25.5 4.4E+02 0.0096 22.7 12.6 29 336-364 170-199 (220)
466 PF03807 F420_oxidored: NADP o 25.4 2.4E+02 0.0051 20.0 5.5 28 49-76 6-34 (96)
467 PRK14170 bifunctional 5,10-met 25.4 3.2E+02 0.007 24.7 7.1 65 288-356 19-84 (284)
468 COG0052 RpsB Ribosomal protein 25.4 3.7E+02 0.008 23.7 7.1 16 369-384 169-184 (252)
469 COG5148 RPN10 26S proteasome r 25.3 3.9E+02 0.0085 22.3 6.9 70 269-349 108-177 (243)
470 PLN02819 lysine-ketoglutarate 25.2 4.1E+02 0.0089 29.0 9.0 42 344-385 637-678 (1042)
471 KOG1429 dTDP-glucose 4-6-dehyd 25.2 1.3E+02 0.0029 27.1 4.5 35 31-74 24-58 (350)
472 cd04795 SIS SIS domain. SIS (S 25.1 2.3E+02 0.0051 19.4 5.4 72 308-384 2-79 (87)
473 PRK11486 flagellar biosynthesi 25.1 1.5E+02 0.0032 23.0 4.2 20 10-29 23-42 (124)
474 TIGR02015 BchY chlorophyllide 25.1 5.1E+02 0.011 24.9 9.0 97 280-384 131-237 (422)
475 KOG3349 Predicted glycosyltran 25.0 3.7E+02 0.0081 21.7 7.3 44 338-385 63-106 (170)
476 PF01372 Melittin: Melittin; 24.8 1.1E+02 0.0024 16.1 2.3 13 19-31 13-25 (26)
477 COG1105 FruK Fructose-1-phosph 24.8 1.6E+02 0.0034 27.0 5.1 85 272-366 104-188 (310)
478 PF06345 Drf_DAD: DRF Autoregu 24.6 73 0.0016 14.2 1.5 10 371-380 5-14 (15)
479 COG1869 RbsD ABC-type ribose t 24.6 29 0.00062 26.9 0.3 87 281-375 45-131 (135)
480 PF02302 PTS_IIB: PTS system, 24.5 1.2E+02 0.0026 21.4 3.7 54 307-365 3-57 (90)
481 PRK11797 D-ribose pyranase; Pr 24.4 79 0.0017 25.1 2.8 86 281-373 45-133 (139)
482 PLN02166 dTDP-glucose 4,6-dehy 24.3 1.2E+02 0.0025 29.4 4.5 36 31-75 117-152 (436)
483 COG0426 FpaA Uncharacterized f 24.3 6.2E+02 0.013 24.0 9.7 79 281-363 227-305 (388)
484 cd02812 PcrB_like PcrB_like pr 24.3 2.3E+02 0.0049 24.5 5.8 75 277-366 5-81 (219)
485 cd06278 PBP1_LacI_like_2 Ligan 24.2 4.6E+02 0.0099 22.5 8.4 22 286-312 16-37 (266)
486 COG0281 SfcA Malic enzyme [Ene 24.2 2.6E+02 0.0057 26.7 6.5 32 353-385 267-298 (432)
487 PF14597 Lactamase_B_5: Metall 24.2 1.5E+02 0.0033 24.7 4.4 44 281-330 154-197 (199)
488 PF14639 YqgF: Holliday-juncti 24.2 2.6E+02 0.0057 22.4 5.8 75 276-358 40-117 (150)
489 PF12683 DUF3798: Protein of u 24.1 2.9E+02 0.0064 24.6 6.4 21 283-307 71-91 (275)
490 TIGR02853 spore_dpaA dipicolin 24.1 2.4E+02 0.0053 25.4 6.3 25 48-75 8-32 (287)
491 PRK14194 bifunctional 5,10-met 24.1 3.7E+02 0.0079 24.5 7.3 66 287-356 20-86 (301)
492 cd06361 PBP1_GPC6A_like Ligand 24.1 3.9E+02 0.0085 25.4 8.1 67 318-386 185-267 (403)
493 TIGR01921 DAP-DH diaminopimela 24.0 1.5E+02 0.0032 27.4 4.9 38 348-385 53-90 (324)
494 PF13788 DUF4180: Domain of un 23.9 2.4E+02 0.0053 21.4 5.2 39 303-344 68-106 (113)
495 cd01539 PBP1_GGBP Periplasmic 23.9 3.7E+02 0.008 24.0 7.6 15 372-386 75-89 (303)
496 KOG2741 Dimeric dihydrodiol de 23.9 2.2E+02 0.0048 26.4 5.8 57 323-385 44-102 (351)
497 COG1519 KdtA 3-deoxy-D-manno-o 23.8 6.5E+02 0.014 24.1 9.1 101 270-386 51-153 (419)
498 PRK14478 nitrogenase molybdenu 23.8 4.3E+02 0.0093 25.9 8.4 99 280-384 165-267 (475)
499 PRK10886 DnaA initiator-associ 23.7 2.3E+02 0.0049 24.0 5.6 71 285-366 97-167 (196)
500 PTZ00367 squalene epoxidase; P 23.6 2E+02 0.0044 28.9 6.1 52 12-73 6-62 (567)
No 1
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-58 Score=439.73 Aligned_cols=362 Identities=80% Similarity=1.351 Sum_probs=324.7
Q ss_pred hhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEec
Q 016535 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLY 106 (388)
Q Consensus 27 ~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 106 (388)
.|.|.+++++|+|+||+++.|||+||++++.+.+|++.|++++|+++|++.+.+++++..+..+.+++++..+..++++.
T Consensus 26 ~~~~~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~ 105 (463)
T PLN02949 26 LRARRSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLR 105 (463)
T ss_pred HhcccCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEec
Confidence 67777889999999999999999999999999999999988899999999877777777767778999988777888887
Q ss_pred cccccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCc
Q 016535 107 RRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSS 186 (388)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~ 186 (388)
++.|+++..|++++.++++++.++.++.++.+..||+++++.++++++|++++.++|+++|+|+|+...||+..++.+..
T Consensus 106 ~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~~~~dm~~~v~~~~~ 185 (463)
T PLN02949 106 KRKWIEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPLARLFGCKVVCYTHYPTISSDMISRVRDRSS 185 (463)
T ss_pred cccccccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhccc
Confidence 79999999999999999999999999998887788999999999999998888899999999999999999999999999
Q ss_pred cccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCC
Q 016535 187 MYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERS 266 (388)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~ 266 (388)
.|++...+.++.+....+.+|++.+.+++++..+.+|.++++|+++++.+++.++.+.++.+++||+|.+.+...+....
T Consensus 186 ~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~~~ 265 (463)
T PLN02949 186 MYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLERS 265 (463)
T ss_pred ccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCcccc
Confidence 99999999998888899999999999999999999999999999999999887776667889999998765532222222
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
.++..++++||+.++||++.+|+|++.+.++.+...++++|+++|+++..++.++.+++++++++++++++|+|+|.++.
T Consensus 266 ~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~ 345 (463)
T PLN02949 266 EDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSY 345 (463)
T ss_pred CCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCH
Confidence 34578999999999999999999999987653322378999999998776677888999999999999999999999999
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+++.++|+.||++++||++|+||++++|||++|+|||++|++
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g 387 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA 387 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC
Confidence 999999999999999999999999999999999999999864
No 2
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=4.8e-53 Score=401.71 Aligned_cols=353 Identities=50% Similarity=0.889 Sum_probs=310.5
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEec-ccccccc
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLY-RRKWIEE 113 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~ 113 (388)
+.|+|+||+++.|||+||++++.+.+|++.+.+++|+++|++.+.....++.+..+.++++..++..++.+. .+.|++.
T Consensus 1 ~~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 80 (419)
T cd03806 1 NTVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEA 80 (419)
T ss_pred CeEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeecc
Confidence 368999999999999999999999999999777999999999876555677777778888888888877764 6789999
Q ss_pred CCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhh-hcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
+.+++++..+++++.....++.+.+.+||++++++++++++++++ ..++|+++|+|+|....+++..+..+...|++..
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~ 160 (419)
T cd03806 81 STYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSA 160 (419)
T ss_pred ccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccCcc
Confidence 999999999999999998888877778999999999888888666 5688999999999888888888888888999999
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEE
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAI 272 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~i 272 (388)
.+++.+.....+.+||+.+.+++++..+.+|.++++|+++++.+.+.++...++.+++||+|++.+.+.+.....+...+
T Consensus 161 ~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~~~~~~~~i 240 (419)
T cd03806 161 TIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDEKTRENQI 240 (419)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccccccCCcEE
Confidence 99999888899999999999999999999999999999999999988765458899999999876654332122445899
Q ss_pred EEEcccCCCCChHHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 273 ISVAQFRPEKAHPLQLEAFSVALRKLDAD-LPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 273 l~vgrl~~~Kg~~~ll~a~~~l~~~~~~~-~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
+|+||+.++||++.+++|++++.++.+.. .++++|+++|++...++.++.++|+++++++++.++|+|+|.+|++++.+
T Consensus 241 l~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~ 320 (419)
T cd03806 241 LSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLE 320 (419)
T ss_pred EEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHH
Confidence 99999999999999999999998764110 13599999999877777788999999999999999999999999999999
Q ss_pred HHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 352 LLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 352 ~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+|+.||++|+||..|+||++++||||||+|||++++
T Consensus 321 ~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ 356 (419)
T cd03806 321 ELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHAS 356 (419)
T ss_pred HHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcC
Confidence 999999999999999999999999999999999986
No 3
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=7.5e-52 Score=356.16 Aligned_cols=354 Identities=43% Similarity=0.748 Sum_probs=315.2
Q ss_pred HHHHhhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCC-CCe
Q 016535 23 ASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLH-PPK 101 (388)
Q Consensus 23 ~~~~~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 101 (388)
.+++++.++| .+.++|+|||+..|||+||++|...+.+++...++..++++++-+.++++++.+.++.+++++++ ++.
T Consensus 33 ~sl~~~~~k~-~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~ 111 (465)
T KOG1387|consen 33 SSLLNRAEKN-VKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIF 111 (465)
T ss_pred HHhhhhhhhh-ceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceE
Confidence 5555665444 77899999999999999999999999999999999999999998889999999999999999986 558
Q ss_pred eEEeccccccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc-hhhhcCCeEEEEEeccccchhhhhh
Q 016535 102 VVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISR 180 (388)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~-~~~~~~~~~i~~~h~p~~~~~~~~~ 180 (388)
++++..+.|+....|++++.+++++....+++.++.+..||+.|+++|+++++| +.++.+.|+++|+|+|.++.||+..
T Consensus 112 Fi~Lk~R~lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~ 191 (465)
T KOG1387|consen 112 FIYLKLRYLVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKK 191 (465)
T ss_pred EEEEEeeeeeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 4558999999999999999999998
Q ss_pred hhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCcc
Q 016535 181 VREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV 260 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~ 260 (388)
+.++.. ++.+.+.+..||+.|..++..+..+||.++++|.|+.+++.+.+.. .++.++++|++++..+.
T Consensus 192 l~qrq~----------s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~-~~~~iVyPPC~~e~lks 260 (465)
T KOG1387|consen 192 LFQRQK----------SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQS-NTCSIVYPPCSTEDLKS 260 (465)
T ss_pred HHhhhh----------cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhc-cceeEEcCCCCHHHHHH
Confidence 886522 2367888899999999999999999999999999999999999985 78889999999876554
Q ss_pred CCCCCCCCCcEEEEEcccCCCCChH-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEE
Q 016535 261 LPLERSTEYPAIISVAQFRPEKAHP-LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339 (388)
Q Consensus 261 ~~~~~~~~~~~il~vgrl~~~Kg~~-~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~ 339 (388)
....+.++.+.++++|.+.|+|++. +-++|+-...+......++++|+++|++..++|.++.+.++..++++.++.+|.
T Consensus 261 ~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~ 340 (465)
T KOG1387|consen 261 KFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQ 340 (465)
T ss_pred HhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceE
Confidence 3333446679999999999999999 334444444333222347899999999999999999999999999999999999
Q ss_pred EccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 340 ~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
|.-.+|.+++.++|..|.+.|+.-+.|.||+++.|+||+|+.+|+.|++
T Consensus 341 F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg 389 (465)
T KOG1387|consen 341 FEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG 389 (465)
T ss_pred EEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC
Confidence 9999999999999999999999999999999999999999999999985
No 4
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=3.9e-37 Score=292.12 Aligned_cols=317 Identities=26% Similarity=0.378 Sum_probs=223.5
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|||+|++|+...| |+|+++.+++++|.++| |+|+++|...+ ......+..+ + ...+... +.+.+..
T Consensus 1 mkIl~~~~~~~~g-G~e~~~~~la~~L~~~G--~~V~v~~~~~~--~~~~~~~~~~--~-----~~~i~~~--~~~~~~~ 66 (392)
T cd03805 1 LRVAFIHPDLGIG-GAERLVVDAALALQSRG--HEVTIYTSHHD--PSHCFEETKD--G-----TLPVRVR--GDWLPRS 66 (392)
T ss_pred CeEEEECCCCCCc-hHHHHHHHHHHHHHhCC--CeEEEEcCCCC--chhcchhccC--C-----eeEEEEE--eEEEcch
Confidence 7899999999866 99999999999999999 88899886531 1111111111 0 0111111 1122222
Q ss_pred CCCceehhhhhhhHHHHHHH--HHhhcCCcEEEecCCcccccchhh-hcCCeEEEEEeccccchhhhhhhhcCCccccCC
Q 016535 115 TYPRFTMIGQSFGSVYLSWE--ALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~Div~~~~~~~~~~~~~~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (388)
.+.++..+...++....... .....++|++|.+.. ....++.+ ..+.|+++++|+|+.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~-------------- 131 (392)
T cd03805 67 IFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQV-SACVPLLKLFSPSKILFYCHFPDQLLAQ-------------- 131 (392)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCc-chHHHHHHHhcCCcEEEEEecChHHhcC--------------
Confidence 22222222223333222222 245568999876543 22233333 3347899999976521100
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-C-CceEEEcCCCCCCCCccCCCC-----
Q 016535 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-P-DRIKRVYPPCDTSGLQVLPLE----- 264 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~-~~~~vi~ngvd~~~~~~~~~~----- 264 (388)
. ....+..+...+.+++++.++.+|.++++|+++++.+.+.++. . ..+.+++||+|.+.+.+.+..
T Consensus 132 ----~---~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~ 204 (392)
T cd03805 132 ----R---GSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGL 204 (392)
T ss_pred ----C---CcHHHHHHHHHHHHHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccc
Confidence 0 1233345556677889999999999999999999999876654 2 234589999998776543221
Q ss_pred --CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHHHh-cCCCCcEE
Q 016535 265 --RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIE-LKVDGNVE 339 (388)
Q Consensus 265 --~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~--~~~~~~~~l~~~~~~-~~l~~~V~ 339 (388)
...+.+.++++||+.+.||++.+++|++++.++.. +.++++|+++|+++.+ ++.++.+++++.+++ +++.++|.
T Consensus 205 ~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~ 283 (392)
T cd03805 205 LIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLA-EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVI 283 (392)
T ss_pred cccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcc-cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEE
Confidence 12456889999999999999999999999977631 1158999999988643 334567899999999 99999999
Q ss_pred EccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 340 ~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
|+|+++++++.++|+.||++++||..|+||++++|||+||+|||++|.+
T Consensus 284 f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~ 332 (392)
T cd03805 284 FLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSG 332 (392)
T ss_pred EeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCC
Confidence 9999999999999999999999999999999999999999999999863
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.6e-35 Score=277.02 Aligned_cols=296 Identities=16% Similarity=0.157 Sum_probs=207.0
Q ss_pred eEEEecc-ccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHP-NTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p-~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+++.+ +.+..||+++.+.+++++|.++| |+|+++|...+.... .+ ....++.+.+++...+....
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G--~~V~v~~~~~~~~~~---~~-------~~~~~i~v~~~p~~~~~~~~ 68 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRG--HKVVVITHAYGNRVG---IR-------YLTNGLKVYYLPFVVFYNQS 68 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcC--CeeEEEeccCCcCCC---cc-------cccCceeEEEecceeccCCc
Confidence 4566554 33345799999999999999999 888998865311100 00 00112233333221111111
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc----hhhhcCCeEEEEEeccccchhhhhhhhcCCccccC
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~----~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (388)
... ..+.......+.+.+.+||+||.+..+..... .++..++|.+++.|......+
T Consensus 69 ~~~------~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~-------------- 128 (398)
T cd03796 69 TLP------TFFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFAD-------------- 128 (398)
T ss_pred ccc------chhhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccc--------------
Confidence 110 11111222233456779999988865433221 345678899988885220000
Q ss_pred CccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCCCCCC
Q 016535 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEY 269 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~~~~~ 269 (388)
......+++.++..+++|.++++|+..++.+....+. ..++.++|||+|.+.|.+......+++
T Consensus 129 ---------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~~~~~~ 193 (398)
T cd03796 129 ---------------ASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSKRDNDK 193 (398)
T ss_pred ---------------hhhHHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCcccCCCCc
Confidence 0001122345677889999999999998876433333 467899999999877755332223456
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
++++++||+.++||++.+++|+..+.++. ++++|+++|+++.. +.++++++++++.++|+|+|+++++++
T Consensus 194 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~------~~l~~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 194 ITIVVISRLVYRKGIDLLVGIIPEICKKH----PNVRFIIGGDGPKR------ILLEEMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred eEEEEEeccchhcCHHHHHHHHHHHHhhC----CCEEEEEEeCCchH------HHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 89999999999999999999999998775 89999999976533 478999999999999999999999999
Q ss_pred HHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 350 ~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.++|+.||++++||..|+||++++|||+||+|||+++.+
T Consensus 264 ~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 264 RDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred HHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 999999999999999999999999999999999999864
No 6
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.7e-33 Score=267.29 Aligned_cols=316 Identities=12% Similarity=-0.001 Sum_probs=206.4
Q ss_pred ceEEEecc-ccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh-hhceecCCCCeeEEeccccccc
Q 016535 35 TSVAFFHP-NTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD-RFGVELLHPPKVVHLYRRKWIE 112 (388)
Q Consensus 35 ~~I~~~~p-~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 112 (388)
|||+++.. +.+.-||+++.+.+++++|.++| |+|+++|+.+..+......+..+ ........++.+++++. +.+
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G--~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~--~~~ 76 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG--HEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPL--YVP 76 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC--CeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccc--cCC
Confidence 67887753 33334699999999999999999 88999997643221111100000 01111123334444332 111
Q ss_pred cCCCCceehhhhhhhHHHHHHHH-Hh--hcCCcEEEecCCcccccc----hhhhcCCeEEEEEeccccchhhhhhhhcCC
Q 016535 113 ESTYPRFTMIGQSFGSVYLSWEA-LC--KFTPLYYFDTSGYAFTYP----LARIFGCRVICYTHYPTISLDMISRVREGS 185 (388)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-l~--~~~~Div~~~~~~~~~~~----~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~ 185 (388)
.. ...+..+..........+.. .. ..+||+||.+....+..+ +++..++|.++++|... .+..... .
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~--~~~~~~~--~- 150 (412)
T PRK10307 77 KQ-PSGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYE--VDAAFGL--G- 150 (412)
T ss_pred CC-ccHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCC--HHHHHHh--C-
Confidence 00 00000011111111111111 11 268999987654322222 44567888888777422 1111000 0
Q ss_pred ccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCC
Q 016535 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER 265 (388)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~ 265 (388)
. .......+...+++++.++.+|.++++|+..++.+.+......++.++|||+|.+.+.+.....
T Consensus 151 -------------~--~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~ 215 (412)
T PRK10307 151 -------------L--LKGGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADAD 215 (412)
T ss_pred -------------C--ccCcHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccc
Confidence 0 0011233445567888999999999999999999987643356899999999987665432110
Q ss_pred ----------CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC
Q 016535 266 ----------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (388)
Q Consensus 266 ----------~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 335 (388)
..++.+++|+|++.++||++.+++|++.+.+. ++++|+++|+|+.. +++++++++++++
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~~-----~~~~l~ivG~g~~~------~~l~~~~~~~~l~ 284 (412)
T PRK10307 216 VDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRDR-----PDLIFVICGQGGGK------ARLEKMAQCRGLP 284 (412)
T ss_pred hHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhccC-----CCeEEEEECCChhH------HHHHHHHHHcCCC
Confidence 13457899999999999999999999988543 68999999977543 3888899999986
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCC----CChHHHHHHHhCCceEeeCC
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEH----FGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~----~~~~vlEAma~G~PVI~~~~ 387 (388)
+|.|+|+++++++.++|+.||++++||..|+ +|..++|||+||+|||+++.
T Consensus 285 -~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~ 339 (412)
T PRK10307 285 -NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAE 339 (412)
T ss_pred -ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeC
Confidence 8999999999999999999999999999998 56678999999999999974
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.6e-32 Score=255.74 Aligned_cols=292 Identities=15% Similarity=0.130 Sum_probs=200.9
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
.+|+++.+....| |+|+++.+++++|.+.| +++++++... .+....+... .++ .++.+....
T Consensus 2 ~~il~ii~~~~~G-G~e~~~~~l~~~l~~~~--~~~~v~~~~~---~~~~~~~~~~-~~i------~~~~~~~~~----- 63 (374)
T TIGR03088 2 PLIVHVVYRFDVG-GLENGLVNLINHLPADR--YRHAVVALTE---VSAFRKRIQR-PDV------AFYALHKQP----- 63 (374)
T ss_pred ceEEEEeCCCCCC-cHHHHHHHHHhhccccc--cceEEEEcCC---CChhHHHHHh-cCc------eEEEeCCCC-----
Confidence 5789999999776 99999999999999999 5555555322 1222222221 122 233332210
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc-hhhhcCCeEEE-EEeccccchhhhhhhhcCCccccCCc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVIC-YTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~-~~~~~~~~~i~-~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
... +......++.+.+.+||+||.+........ +++..+.|..+ ..|.... ..
T Consensus 64 -~~~-------~~~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~----~~------------- 118 (374)
T TIGR03088 64 -GKD-------VAVYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDV----FD------------- 118 (374)
T ss_pred -CCC-------hHHHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCccc----cc-------------
Confidence 001 112233445677889999987643221111 33445555422 2222110 00
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCC------
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLER------ 265 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~------ 265 (388)
.... ...+.++.+...+.+|.++++|+..++.+.+.++. ..++.+++||+|.+.+.+.....
T Consensus 119 --------~~~~---~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~ 187 (374)
T TIGR03088 119 --------LDGS---NWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPP 187 (374)
T ss_pred --------chhh---HHHHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHh
Confidence 0000 01122345556667899999999999999877664 46788999999987765432111
Q ss_pred ---CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 016535 266 ---STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (388)
Q Consensus 266 ---~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g 342 (388)
..++.+++++||+.++||++.+++|++.+.++.+...++++|+++|+|+.. +++++.++++++++++.|.|
T Consensus 188 ~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~~g 261 (374)
T TIGR03088 188 DFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR------GACEQMVRAAGLAHLVWLPG 261 (374)
T ss_pred hcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchH------HHHHHHHHHcCCcceEEEcC
Confidence 145689999999999999999999999998775322247999999977543 37889999999998999999
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.. +|+.++|+.||++++||..|+||++++|||+||+|||+||.+
T Consensus 262 ~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~ 305 (374)
T TIGR03088 262 ER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVG 305 (374)
T ss_pred Cc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCC
Confidence 75 799999999999999999999999999999999999999864
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.3e-32 Score=260.57 Aligned_cols=306 Identities=16% Similarity=0.119 Sum_probs=202.4
Q ss_pred cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceeh
Q 016535 42 PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTM 121 (388)
Q Consensus 42 p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (388)
|.....||+|+++.+++++|.++| |+|+++|......... .....+++.+.++....+.. ......
T Consensus 14 ~~~~~~GG~e~~v~~la~~L~~~G--~~V~v~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~---~~~~~~ 79 (405)
T TIGR03449 14 PGTGDAGGMNVYILETATELARRG--IEVDIFTRATRPSQPP---------VVEVAPGVRVRNVVAGPYEG---LDKEDL 79 (405)
T ss_pred CCCcCCCCceehHHHHHHHHhhCC--CEEEEEecccCCCCCC---------ccccCCCcEEEEecCCCccc---CCHHHH
Confidence 344444699999999999999999 8899998753211000 11122333444432211110 000000
Q ss_pred hhhhhhHHHHHH-HHHh--hcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccc
Q 016535 122 IGQSFGSVYLSW-EALC--KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQ 196 (388)
Q Consensus 122 ~~~~~~~~~~~~-~~l~--~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
...........+ ..+. ..++|+||.+........ +.+..++|.+.++|.... ...... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~---~~~~~~------------~~ 144 (405)
T TIGR03449 80 PTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAA---VKNAAL------------AD 144 (405)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHH---HHHHhc------------cC
Confidence 000000011112 1222 247999987653221111 334678899998885321 000000 00
Q ss_pred cchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCC-------CCCC
Q 016535 197 SNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-------RSTE 268 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~-------~~~~ 268 (388)
. .. .......++++..++.+|.++++|+...+.+.+.++. ..++.+++||+|.+.+.+.+.. ...+
T Consensus 145 ~---~~---~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~ 218 (405)
T TIGR03449 145 G---DT---PEPEARRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLD 218 (405)
T ss_pred C---CC---CchHHHHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCC
Confidence 0 00 0001122346777889999999999999988776654 4678999999998776543211 1134
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCC--cEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPR--PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~--~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
+.+++++||+.+.||++.+++|++.+.++. ++ ++|+++|++... ..++.++++++++++++.++|+|+|++++
T Consensus 219 ~~~i~~~G~l~~~K~~~~li~a~~~l~~~~----~~~~~~l~ivG~~~~~-g~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 293 (405)
T TIGR03449 219 TKVVAFVGRIQPLKAPDVLLRAVAELLDRD----PDRNLRVIVVGGPSGS-GLATPDALIELAAELGIADRVRFLPPRPP 293 (405)
T ss_pred CcEEEEecCCCcccCHHHHHHHHHHHHhhC----CCcceEEEEEeCCCCC-cchHHHHHHHHHHHcCCCceEEECCCCCH
Confidence 588999999999999999999999997775 44 999999964321 11455689999999999999999999999
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+++.++|+.||++++||..|+||++++|||++|+|||+++.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~ 334 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARV 334 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecC
Confidence 99999999999999999999999999999999999999985
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=5e-32 Score=261.94 Aligned_cols=293 Identities=18% Similarity=0.186 Sum_probs=197.9
Q ss_pred CccceEEEe-cc--ccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccc
Q 016535 32 NRTTSVAFF-HP--NTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR 108 (388)
Q Consensus 32 ~~~~~I~~~-~p--~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 108 (388)
+++|||+++ +| .... ||.++.+.+++++|.++| |+|++++.....+ + + ..++.+ +.....
T Consensus 56 ~~~mrI~~~~~~~~~~~~-gG~~~~~~~l~~~L~~~G--~eV~vlt~~~~~~-~----~---~~g~~v------~~~~~~ 118 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYV-SGYKNRFQNFIRYLREMG--DEVLVVTTDEGVP-Q----E---FHGAKV------IGSWSF 118 (465)
T ss_pred CCCceEEEEECCcCCccc-ccHHHHHHHHHHHHHHCC--CeEEEEecCCCCC-c----c---ccCcee------eccCCc
Confidence 678999977 33 3334 499999999999999999 8888988764211 1 0 011111 110000
Q ss_pred cccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCC
Q 016535 109 KWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGS 185 (388)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~ 185 (388)
. .+ .+..+.. .+.......+.+.+.+||+||.+........ +++..++|.+...|.... ....
T Consensus 119 ~-~~--~~~~~~~---~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~--~~~~------ 184 (465)
T PLN02871 119 P-CP--FYQKVPL---SLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVP--VYIP------ 184 (465)
T ss_pred C-Cc--cCCCcee---eccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCch--hhhh------
Confidence 0 00 0000000 0000112334567789999987754322222 345678999988885220 0000
Q ss_pred ccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCC
Q 016535 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE 264 (388)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~ 264 (388)
...+ .. .. +....++++..+.+|.++++|+..++.+.+.+.. ..++.++|||+|.+.|.+....
T Consensus 185 ----------~~~~-~~---~~-~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~ 249 (465)
T PLN02871 185 ----------RYTF-SW---LV-KPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRS 249 (465)
T ss_pred ----------cccc-hh---hH-HHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCcccc
Confidence 0000 00 11 1112245677788999999999999999876532 4689999999998877543211
Q ss_pred ---------CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC
Q 016535 265 ---------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (388)
Q Consensus 265 ---------~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 335 (388)
..++.+.++|+||+.++||++.++++++.+ ++++|+++|+|+. .+++++++++
T Consensus 250 ~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~--------~~~~l~ivG~G~~------~~~l~~~~~~---- 311 (465)
T PLN02871 250 EEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL--------PGARLAFVGDGPY------REELEKMFAG---- 311 (465)
T ss_pred HHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC--------CCcEEEEEeCChH------HHHHHHHhcc----
Confidence 113457899999999999999999998766 7899999996643 3477777664
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.+|+|+|+++++|+.++|+.||++|+||..|+||++++|||+||+|||+++.+
T Consensus 312 ~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g 364 (465)
T PLN02871 312 TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAG 364 (465)
T ss_pred CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCC
Confidence 47999999999999999999999999999999999999999999999999853
No 10
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=4.6e-32 Score=256.94 Aligned_cols=311 Identities=16% Similarity=0.107 Sum_probs=201.6
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCc--hhHHHHhhhhhceecCCCCee---EEec---
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFP--DSLLARAVDRFGVELLHPPKV---VHLY--- 106 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~---~~~~--- 106 (388)
|+|+|+.+..+. -.|+++.+-+.+|.++| ++|.+++-.+..+. ..........-.+...+.... ..+.
T Consensus 1 m~ia~~~~~~P~--~setFi~~ei~~l~~~G--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (406)
T PRK15427 1 MKVGFFLLKFPL--SSETFVLNQITAFIDMG--FEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRA 76 (406)
T ss_pred CeEEEEeccCCc--cchhhHHHHHHHHHHcC--ceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhh
Confidence 689999776664 47999999999999999 78888875542110 000010000001111100000 0000
Q ss_pred ---cccccccCCCCceehhh--hhhhHHHHH---HHHHhhcCCcEEEecCCcccccc--hhh--hcCCeEEEEEeccccc
Q 016535 107 ---RRKWIEESTYPRFTMIG--QSFGSVYLS---WEALCKFTPLYYFDTSGYAFTYP--LAR--IFGCRVICYTHYPTIS 174 (388)
Q Consensus 107 ---~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~l~~~~~Div~~~~~~~~~~~--~~~--~~~~~~i~~~h~p~~~ 174 (388)
...+........+.+.. .....+... ...+.+.++|++|++.+...... +.. ..+.+.+.++|..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~ 156 (406)
T PRK15427 77 SQTLRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDIS 156 (406)
T ss_pred hhHhhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEcccccc
Confidence 00000000000001100 001111111 11245668999998765332211 222 2234667788865421
Q ss_pred hhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCC
Q 016535 175 LDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD 254 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd 254 (388)
... ....+. ...+..++++|.++++|+..++.+.+.....+++.++|||+|
T Consensus 157 ~~~-------------------------~~~~~~----~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~nGvd 207 (406)
T PRK15427 157 SRE-------------------------VLNHYT----PEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSRMGVD 207 (406)
T ss_pred cch-------------------------hhhhhh----HHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcCCCCC
Confidence 100 000111 124445678999999999999999775332568999999999
Q ss_pred CCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC
Q 016535 255 TSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV 334 (388)
Q Consensus 255 ~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l 334 (388)
.+.|.+.+.....++..++++||+.+.||++.+++|++.+++++ ++++++++|+|+. .+++++.++++++
T Consensus 208 ~~~f~~~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~----~~~~l~ivG~G~~------~~~l~~~~~~~~l 277 (406)
T PRK15427 208 MTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQG----VAFRYRILGIGPW------ERRLRTLIEQYQL 277 (406)
T ss_pred HHHcCCCccccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC----CCEEEEEEECchh------HHHHHHHHHHcCC
Confidence 88776433222244578999999999999999999999998775 7999999996643 3489999999999
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCC------CCCCChHHHHHHHhCCceEeeCCC
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMI------DEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~------~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.++|.|+|+++++++.++|+.||++|+||. .||+|++++|||+||+|||+|+.+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~ 337 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS 337 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC
Confidence 999999999999999999999999999997 499999999999999999999853
No 11
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1e-31 Score=251.60 Aligned_cols=288 Identities=17% Similarity=0.110 Sum_probs=201.3
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||++++++.+ .||+++++.+++++|.+.| ++|++++..... ........ ..+. .++.... ..
T Consensus 1 kIl~~~~~~~-~GG~~~~~~~l~~~L~~~~--~~v~~i~~~~~~--~~~~~~~~-~~~~------~~~~~~~------~~ 62 (358)
T cd03812 1 KILHIVGTMN-RGGIETFIMNYYRNLDRSK--IQFDFLVTSKEE--GDYDDEIE-KLGG------KIYYIPA------RK 62 (358)
T ss_pred CEEEEeCCCC-CccHHHHHHHHHHhcCccc--eEEEEEEeCCCC--cchHHHHH-HcCC------eEEEecC------CC
Confidence 6899999884 4599999999999999999 888888876421 11111111 1121 2222111 00
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeE-EEEEeccccchhhhhhhhcCCccccCCc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRV-ICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~-i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
. ....+ .....+.+.+.+||+||.+......+. +.+..+.+. +.+.|........
T Consensus 63 ~----~~~~~---~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------- 120 (358)
T cd03812 63 K----NPLKY---FKKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDK--------------- 120 (358)
T ss_pred c----cHHHH---HHHHHHHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccccc---------------
Confidence 0 01111 122233456789999987655322222 223445554 4555643211000
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC--------
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------- 264 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~-------- 264 (388)
....... .++++...+.++.+++.|+..++.+.+. ....++.++|||+|.+.+.+....
T Consensus 121 ----------~~~~~~~--~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~ 187 (358)
T cd03812 121 ----------KKKILKY--KVLRKLINRLATDYLACSEEAGKWLFGK-VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELG 187 (358)
T ss_pred ----------cchhhHH--HHHHHHHHhcCCEEEEcCHHHHHHHHhC-CCcccEEEEeccCcHHHcCCCchhhhHHHHcC
Confidence 0000101 3456777888999999999999998765 225689999999998765443211
Q ss_pred CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016535 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (388)
Q Consensus 265 ~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v 344 (388)
...+++.++|+||+.++||++.+++|++.+.+++ ++++++++|+|+..+ .+++.+++++++++|.++|.
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~----~~~~l~ivG~g~~~~------~~~~~~~~~~~~~~v~~~g~- 256 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKN----PNAKLLLVGDGELEE------EIKKKVKELGLEDKVIFLGV- 256 (358)
T ss_pred CCCCCEEEEEEeccccccChHHHHHHHHHHHHhC----CCeEEEEEeCCchHH------HHHHHHHhcCCCCcEEEecc-
Confidence 1245689999999999999999999999998875 899999999775443 78888889999999999998
Q ss_pred CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 345 ~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.+++.++|+.||++|+||..|++|++++||||+|+|||+++.+
T Consensus 257 -~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~ 299 (358)
T cd03812 257 -RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTI 299 (358)
T ss_pred -cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCC
Confidence 4889999999999999999999999999999999999999864
No 12
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=9.4e-32 Score=253.20 Aligned_cols=289 Identities=18% Similarity=0.146 Sum_probs=199.6
Q ss_pred ceEEEec-cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecccccccc
Q 016535 35 TSVAFFH-PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (388)
Q Consensus 35 ~~I~~~~-p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (388)
|||++++ |.. ||.++++.+++++|.++| |+|++++...+. ..... . .++ .+....... .+.
T Consensus 1 mki~~~~~p~~---gG~~~~~~~la~~L~~~G--~~v~v~~~~~~~---~~~~~-~--~~~------~~~~~~~~~-~~~ 62 (371)
T cd04962 1 MKIGIVCYPTY---GGSGVVATELGKALARRG--HEVHFITSSRPF---RLDEY-S--PNI------FFHEVEVPQ-YPL 62 (371)
T ss_pred CceeEEEEeCC---CCccchHHHHHHHHHhcC--CceEEEecCCCc---chhhh-c--cCe------EEEEecccc-cch
Confidence 5777774 343 799999999999999999 778888765311 11000 0 011 111111100 000
Q ss_pred CCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hh-hh---cCCeEEEEEeccccchhhhhhhhcCCcc
Q 016535 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LA-RI---FGCRVICYTHYPTISLDMISRVREGSSM 187 (388)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~-~~---~~~~~i~~~h~p~~~~~~~~~~~~~~~~ 187 (388)
...+. ..........+.+.+.+||+||.+...+.... ++ +. .++|.+++.|....... .
T Consensus 63 ~~~~~-----~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~-------- 127 (371)
T cd04962 63 FQYPP-----YDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLV--G-------- 127 (371)
T ss_pred hhcch-----hHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccc--c--------
Confidence 00000 11112223344567789999987654332222 22 22 27889988885431100 0
Q ss_pred ccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC---
Q 016535 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE--- 264 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~--- 264 (388)
. ...+.++.+...+.+|.+++.|+..++.+.+.++...++.++|||+|...+.+....
T Consensus 128 --------~-----------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~ 188 (371)
T cd04962 128 --------Q-----------DPSFQPATRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALK 188 (371)
T ss_pred --------c-----------cccchHHHHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHH
Confidence 0 001122456677889999999999999998776556789999999997655432211
Q ss_pred ----CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE
Q 016535 265 ----RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF 340 (388)
Q Consensus 265 ----~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~ 340 (388)
...+..+++++||+.+.||++.+++|+..+.++ ++++++++|.+++.+ .+++.+++++++++|.|
T Consensus 189 ~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-----~~~~l~i~G~g~~~~------~~~~~~~~~~~~~~v~~ 257 (371)
T cd04962 189 RRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-----VPARLLLVGDGPERS------PAERLARELGLQDDVLF 257 (371)
T ss_pred HhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-----CCceEEEEcCCcCHH------HHHHHHHHcCCCceEEE
Confidence 113457899999999999999999999999766 479999999876443 78888889999889999
Q ss_pred ccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 341 YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 341 ~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+|.. +++.++|+.||++++||..|+||++++|||++|+|||+++.+
T Consensus 258 ~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~ 303 (371)
T cd04962 258 LGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG 303 (371)
T ss_pred ecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC
Confidence 9987 689999999999999999999999999999999999999853
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1e-30 Score=248.17 Aligned_cols=310 Identities=20% Similarity=0.194 Sum_probs=198.2
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
+|+|+|+..+.. ..+++++|.++| |+|+++|........ . +++++.+..........
T Consensus 1 ~il~~~~~~p~~------~~~la~~L~~~G--~~v~~~~~~~~~~~~----------~-----~v~~~~~~~~~~~~~~~ 57 (396)
T cd03818 1 RILFVHQNFPGQ------FRHLAPALAAQG--HEVVFLTEPNAAPPP----------G-----GVRVVRYRPPRGPTSGT 57 (396)
T ss_pred CEEEECCCCchh------HHHHHHHHHHCC--CEEEEEecCCCCCCC----------C-----CeeEEEecCCCCCCCCC
Confidence 589999888533 457999999999 888888876521101 0 22333332211111111
Q ss_pred CCceehhhhhhh---HHHHHHHH--HhhcCCcEEEecCCcccccchhh-hcCCeEEEEEeccccchhhhhhhhcCCcccc
Q 016535 116 YPRFTMIGQSFG---SVYLSWEA--LCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (388)
Q Consensus 116 ~~~~~~~~~~~~---~~~~~~~~--l~~~~~Div~~~~~~~~~~~~~~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~ 189 (388)
++.......... ........ ....+||+||.+.++.....+.. ..++|.+.++|+.... ......+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~-------~~~~~~~~ 130 (396)
T cd03818 58 HPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRA-------EGADVGFD 130 (396)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecC-------CCCCCCCC
Confidence 222211111111 11111111 23457999999988765544444 3568999888753210 00000111
Q ss_pred CCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCC----
Q 016535 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER---- 265 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~---- 265 (388)
.. . .. ........+...++....++.+|.++++|+++++.+.+.++ .++.+||||+|++.+.+.+...
T Consensus 131 ~~-~-~~----~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~--~ki~vI~ngvd~~~f~~~~~~~~~~~ 202 (396)
T cd03818 131 PE-F-PP----SLDDALRLRNRNALILLALAQADAGVSPTRWQRSTFPAELR--SRISVIHDGIDTDRLRPDPQARLRLP 202 (396)
T ss_pred CC-C-CC----chhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhhc--cceEEeCCCccccccCCCchhhhccc
Confidence 00 0 00 00000111222223567788999999999999999877653 5899999999988776533211
Q ss_pred -----CCCCcEEEEEcc-cCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC-----CccHH-HHHHHHHHHH-hc
Q 016535 266 -----STEYPAIISVAQ-FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN-----KSDEE-RLQSLKDKSI-EL 332 (388)
Q Consensus 266 -----~~~~~~il~vgr-l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~-----~~~~~-~~~~l~~~~~-~~ 332 (388)
..+...++|+|| +.+.||++.+++|++.+.++. |+++|+++|++.. .++++ +.+++.+... ++
T Consensus 203 ~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~----~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 203 NGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRAR----PDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred ccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHC----CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 124578999997 999999999999999998875 8999999997421 11111 2333333222 22
Q ss_pred CCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 333 KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 333 ~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+ .++|+|+|++|++++.++|+.||++++||..|++|++++||||||+|||++|.+
T Consensus 279 ~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~ 333 (396)
T cd03818 279 D-LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA 333 (396)
T ss_pred C-cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC
Confidence 2 368999999999999999999999999999999999999999999999999863
No 14
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.1e-30 Score=257.50 Aligned_cols=310 Identities=15% Similarity=0.064 Sum_probs=202.8
Q ss_pred ccc-eEEEeccccCCCCChhhHHHHHHHHHhhcCC------------CceEEEEecCCCCCchhHHHHhhhhhceecCCC
Q 016535 33 RTT-SVAFFHPNTNDGGGGERVLWCAVKAIQEESP------------DLDCIVYTGDHDAFPDSLLARAVDRFGVELLHP 99 (388)
Q Consensus 33 ~~~-~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~------------~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~ 99 (388)
+.. +|+++.+..+.| |+|+++.+|+++|.+.+. .+.|++++.......+....+.. ..++++
T Consensus 279 ~~~~rIl~vi~sl~~G-GAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~-~~Gv~v--- 353 (694)
T PRK15179 279 SFVGPVLMINGSLGAG-GAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLA-DAGIPV--- 353 (694)
T ss_pred CCcceEEEEeCCCCCC-cHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHH-hCCCeE---
Confidence 345 899999999888 999999999999999953 24566653221000011222221 223322
Q ss_pred CeeEEecccc-cccc---CCCCcee----hh-hhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEE
Q 016535 100 PKVVHLYRRK-WIEE---STYPRFT----MI-GQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYT 168 (388)
Q Consensus 100 ~~~~~~~~~~-~~~~---~~~~~~~----~~-~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~ 168 (388)
..+.... +... .....+. .+ .......+...+++++.+||+||.+......+. .++..++|.+++.
T Consensus 354 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~t 430 (694)
T PRK15179 354 ---SVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVLS 430 (694)
T ss_pred ---EEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEEE
Confidence 2222211 0000 0000000 00 011222334455678889999997765443222 3446678877644
Q ss_pred -eccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCce
Q 016535 169 -HYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRI 246 (388)
Q Consensus 169 -h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~ 246 (388)
|.-. . .. .. ...+..+...+. ......++.++++|+..++.+.+.++. ..++
T Consensus 431 ~h~~~--~-~~-----------------~~---~~~~~~~~~l~~---~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI 484 (694)
T PRK15179 431 VRTMP--P-VD-----------------RP---DRYRVEYDIIYS---ELLKMRGVALSSNSQFAAHRYADWLGVDERRI 484 (694)
T ss_pred eCCCc--c-cc-----------------ch---hHHHHHHHHHHH---HHHhcCCeEEEeCcHHHHHHHHHHcCCChhHE
Confidence 4210 0 00 00 011111222211 122234567888899988888776555 4689
Q ss_pred EEEcCCCCCCCCccCCCC----------CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 016535 247 KRVYPPCDTSGLQVLPLE----------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK 316 (388)
Q Consensus 247 ~vi~ngvd~~~~~~~~~~----------~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~ 316 (388)
.+||||+|...+.+.+.. ...+.++|+++||+.+.||++.+++|++.+.++. |+++|+|+|+|+..
T Consensus 485 ~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~----p~~~LvIvG~G~~~ 560 (694)
T PRK15179 485 PVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASH----PKVRFIMVGGGPLL 560 (694)
T ss_pred EEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHC----cCeEEEEEccCcch
Confidence 999999997766432210 1123468999999999999999999999998775 89999999987644
Q ss_pred ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 317 SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 317 ~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+ +++++++++++.++|.|+|++ +++..+|+.+|++|+||.+|+||++++|||+||+|||+|+.+
T Consensus 561 ~------~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g 624 (694)
T PRK15179 561 E------SVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG 624 (694)
T ss_pred H------HHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCC
Confidence 3 899999999999999999997 689999999999999999999999999999999999999853
No 15
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.8e-31 Score=249.95 Aligned_cols=279 Identities=15% Similarity=0.152 Sum_probs=190.7
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhcee-cCCCCeeEEecccccccc
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVE-LLHPPKVVHLYRRKWIEE 113 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~ 113 (388)
|||+++.+.....||+|+++.+++++|.++|+.+++++++...... .... +..+.. ..+.. .+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~-~~~~----~~~~~~~~~~~~---~~-------- 64 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMD-KAWL----KEIKYAQSFSNI---KL-------- 64 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCC-hHHH----Hhcchhcccccc---hh--------
Confidence 7999999887655699999999999999995559999888764211 1111 111100 00000 00
Q ss_pred CCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCe--EEEEEeccccchhhhhhhhcCCcccc
Q 016535 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCR--VICYTHYPTISLDMISRVREGSSMYN 189 (388)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~--~i~~~h~p~~~~~~~~~~~~~~~~~~ 189 (388)
..+.. ........+.+.+.+||+||++......+. +.+..+.| .+.+.|....
T Consensus 65 ---~~~~~----~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---------------- 121 (359)
T PRK09922 65 ---SFLRR----AKHVYNFSKWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLD---------------- 121 (359)
T ss_pred ---hhhcc----cHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCccc----------------
Confidence 00000 011122335677889999987754332221 22334444 3444443110
Q ss_pred CCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCC
Q 016535 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEY 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~ 269 (388)
.. .... . ..+..+|.++++|+.+++.+.+.+....++.++|||+|.+.+..... ...++
T Consensus 122 -----------~~---~~~~----~--~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~-~~~~~ 180 (359)
T PRK09922 122 -----------HK---KHAE----C--KKITCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPP-ERDKP 180 (359)
T ss_pred -----------cc---chhh----h--hhhhcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCc-ccCCC
Confidence 00 0000 0 11267999999999999999875333567999999999654322111 12345
Q ss_pred cEEEEEcccC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC--
Q 016535 270 PAIISVAQFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL-- 345 (388)
Q Consensus 270 ~~il~vgrl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~-- 345 (388)
..++++||+. +.||++.+++|+.++. ++++|+++|+|++.+ ++++.+++++++++|.|+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~-------~~~~l~ivG~g~~~~------~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTT-------GEWQLHIIGDGSDFE------KCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhC-------CCeEEEEEeCCccHH------HHHHHHHHcCCCCeEEEecccCCc
Confidence 8899999996 4699999999999872 479999999876543 7899999999999999999885
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+++.++|+.+|++|+||..|+||++++||||||+|||++|
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~ 288 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSD 288 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeC
Confidence 48899999999999999999999999999999999999998
No 16
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=3e-30 Score=255.04 Aligned_cols=336 Identities=12% Similarity=0.027 Sum_probs=211.0
Q ss_pred CccceEEEec----cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh-hhce------------
Q 016535 32 NRTTSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD-RFGV------------ 94 (388)
Q Consensus 32 ~~~~~I~~~~----p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~-~~~i------------ 94 (388)
...|+|+|+. |....| |.+-++..|.++|+++| |+|.|+++.++.-.......... ....
T Consensus 479 ~~~mkILfVasE~aP~aKtG-GLaDVv~sLPkAL~~~G--hdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 555 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVG-GLADVVSGLGKALQKKG--HLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNK 555 (977)
T ss_pred CCCCEEEEEEcccccccccc-cHHHHHHHHHHHHHHcC--CeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEE
Confidence 4689999974 666666 99999999999999999 88889988763211110000000 0000
Q ss_pred ---ecCCCCeeEEeccc---ccccc-CCCCceehhhhhhhHHHHHHHHHh--hcCCcEEEecCCccccc-chhh------
Q 016535 95 ---ELLHPPKVVHLYRR---KWIEE-STYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTY-PLAR------ 158 (388)
Q Consensus 95 ---~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~-~~~~------ 158 (388)
...+++.++.+... .+..+ ..+....-..++..+-.....++. ..+|||||++.+....+ |+.+
T Consensus 556 v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~ 635 (977)
T PLN02939 556 IWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPK 635 (977)
T ss_pred EEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhc
Confidence 01122333433210 01111 111111111111111111222333 35899999887655443 3322
Q ss_pred -hcCCeEEEEEeccccchhh-hhhhhcCCccccCCc--cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHH
Q 016535 159 -IFGCRVICYTHYPTISLDM-ISRVREGSSMYNNNA--SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQS 234 (388)
Q Consensus 159 -~~~~~~i~~~h~p~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~ 234 (388)
..++++++++|.-.+.-.. ...+. ....+ .+... ..+...++... .+.+..+..+|.++++|+..++
T Consensus 636 ~~~~~ktVfTIHNl~yQG~f~~~~l~-----~lGL~~~~l~~~---d~le~~~~~~i-N~LK~GIv~AD~VtTVSptYA~ 706 (977)
T PLN02939 636 GFNSARICFTCHNFEYQGTAPASDLA-----SCGLDVHQLDRP---DRMQDNAHGRI-NVVKGAIVYSNIVTTVSPTYAQ 706 (977)
T ss_pred cCCCCcEEEEeCCCcCCCcCCHHHHH-----HcCCCHHHccCh---hhhhhccCCch-HHHHHHHHhCCeeEeeeHHHHH
Confidence 2457899999964311100 00000 00000 00000 00000011111 1345556679999999999999
Q ss_pred HHHHHhCC---------CCceEEEcCCCCCCCCccCCCC-----------------C---------C---CCCcEEEEEc
Q 016535 235 HIEKLWGI---------PDRIKRVYPPCDTSGLQVLPLE-----------------R---------S---TEYPAIISVA 276 (388)
Q Consensus 235 ~l~~~~~~---------~~~~~vi~ngvd~~~~~~~~~~-----------------~---------~---~~~~~il~vg 276 (388)
.+...++. ..++.+|+||+|++.+.|.... . . .+.+.|++||
T Consensus 707 EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VG 786 (977)
T PLN02939 707 EVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCIT 786 (977)
T ss_pred HHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEee
Confidence 98763321 4688999999998877653210 0 0 1347899999
Q ss_pred ccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC
Q 016535 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 277 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a 356 (388)
|+.++||++.+++|+..+.+ ++++|+++|+|++ ..+.+.+++++++++..++|.|+|..++.....+|+.|
T Consensus 787 RL~~QKGiDlLleA~~~Ll~------~dvqLVIvGdGp~---~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaA 857 (977)
T PLN02939 787 RLVPQKGVHLIRHAIYKTAE------LGGQFVLLGSSPV---PHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAAS 857 (977)
T ss_pred cCCcccChHHHHHHHHHHhh------cCCEEEEEeCCCc---HHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhC
Confidence 99999999999999998864 3799999998863 34456888999999998899999999877788999999
Q ss_pred cEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 357 VVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 357 dv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
|+||+||.+|+||++++|||+||+|+|+++++
T Consensus 858 DIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vG 889 (977)
T PLN02939 858 DMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTG 889 (977)
T ss_pred CEEEECCCccCCcHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999864
No 17
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.9e-30 Score=249.05 Aligned_cols=317 Identities=16% Similarity=0.103 Sum_probs=191.0
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhh
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
||+++++.+|+++|.++|+-++|+++|..... .....+.... ..+..+++.+.+++... ..+........++.
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~--~~~~~~~~~~-~~~~~~gv~v~r~~~~~----~~~~~~~~~~~~~~ 98 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKD--AKVSPDYAQP-IERIAPGARIVRLPFGP----RRYLRKELLWPYLD 98 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccC--cCCCCccCCC-eeEeCCCcEEEEecCCC----CCCcChhhhhhhHH
Confidence 79999999999999999942388888864210 0000000000 11223344555543211 11111111111111
Q ss_pred HH-HHHHHHHhh--cCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhh
Q 016535 128 SV-YLSWEALCK--FTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (388)
Q Consensus 128 ~~-~~~~~~l~~--~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (388)
.+ ....+.+.+ .+||+||++........ +++..++|.+.+.|..... ....+.. .......
T Consensus 99 ~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~~~~~--~~~~~~~------------~~~~~~~ 164 (439)
T TIGR02472 99 ELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGHSLGRE--KRRRLLA------------AGLKPQQ 164 (439)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecccccch--hhhhccc------------CCCChhh
Confidence 11 112223443 36999997753221111 3346789999999953210 0000000 0000000
Q ss_pred hhhHHHHH-HHHHHHHHhccCCEEEECChhHHHH-HHHHhCC-CCceEEEcCCCCCCCCccCCCCC--------------
Q 016535 203 CKIVYYTF-FSWMYGLVGSCADLAMVNSSWTQSH-IEKLWGI-PDRIKRVYPPCDTSGLQVLPLER-------------- 265 (388)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~a~~ii~~S~~~~~~-l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~-------------- 265 (388)
....+... ....++..++.+|.++++|+...+. +....+. +.++.+||||+|++.|.+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~ 244 (439)
T TIGR02472 165 IEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLK 244 (439)
T ss_pred hhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhcc
Confidence 11111100 0114678889999999998764433 3332222 46899999999988776532110
Q ss_pred CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcc-----HHHHHHHHHHHHhcCCCCcEEE
Q 016535 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD-----EERLQSLKDKSIELKVDGNVEF 340 (388)
Q Consensus 266 ~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~-----~~~~~~l~~~~~~~~l~~~V~~ 340 (388)
.++...++++||+.+.||++.+++|++.+..... .+++. +++|++++.+. .++.+++.++++++++.++|+|
T Consensus 245 ~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~--~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f 321 (439)
T TIGR02472 245 DPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQE--MANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAY 321 (439)
T ss_pred ccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhh--hccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEe
Confidence 1345789999999999999999999986432110 03333 35677654321 1344567778899999999999
Q ss_pred ccCCCHHHHHHHHHhC----cEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 341 YKNLLYRDLVKLLGGA----VVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 341 ~g~v~~~~l~~~~~~a----dv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+|+++++++.++|+.| |++|+||.+|+||++++||||||+|||+|+.+
T Consensus 322 ~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g 373 (439)
T TIGR02472 322 PKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG 373 (439)
T ss_pred cCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC
Confidence 9999999999999987 99999999999999999999999999999864
No 18
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=3.1e-30 Score=241.97 Aligned_cols=291 Identities=15% Similarity=0.074 Sum_probs=192.6
Q ss_pred eEEEecc--ccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecccccccc
Q 016535 36 SVAFFHP--NTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (388)
Q Consensus 36 ~I~~~~p--~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (388)
||+++.. +...+||+++++.+++++|.++| |+|++++........ .....++.+..++...
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g--~~v~v~~~~~~~~~~-----------~~~~~~i~~~~~~~~~---- 63 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARG--HEVTVYCRSPYPKQK-----------ETEYNGVRLIHIPAPE---- 63 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcC--CCEEEEEccCCCCCc-----------ccccCCceEEEcCCCC----
Confidence 4677744 23456799999999999999999 778888865421110 0011222333322211
Q ss_pred CCCCceehhhhhhhHHHHHHHHH-hhcCCcEEEecCCcccc-cchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCC
Q 016535 114 STYPRFTMIGQSFGSVYLSWEAL-CKFTPLYYFDTSGYAFT-YPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (388)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Div~~~~~~~~~-~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (388)
...+ ..........+..+ .+.++|++|........ ..+++..+.|.+++.|.......
T Consensus 64 --~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--------------- 123 (363)
T cd04955 64 --IGGL---GTIIYDILAILHALFVKRDIDHVHALGPAIAPFLPLLRLKGKKVVVNMDGLEWKRA--------------- 123 (363)
T ss_pred --ccch---hhhHHHHHHHHHHHhccCCeEEEEecCccHHHHHHHHHhcCCCEEEEccCcceeec---------------
Confidence 0000 01111111112222 24456666654332111 12344558899988885331100
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCcc-CCC---CCCC
Q 016535 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV-LPL---ERST 267 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~-~~~---~~~~ 267 (388)
.+....++.+.+.++...+.+|.++++|+..++.+++.++... .++|||+|...+.+ ... ....
T Consensus 124 ----------~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~--~~i~ngv~~~~~~~~~~~~~~~~~~ 191 (363)
T cd04955 124 ----------KWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRDS--TYIPYGADHVVSSEEDEILKKYGLE 191 (363)
T ss_pred ----------ccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCCC--eeeCCCcChhhcchhhhhHHhcCCC
Confidence 0001122344456778889999999999999999987777533 79999999766543 111 0112
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHH-hcCCCCcEEEccCCCH
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLY 346 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~v~~ 346 (388)
+...++++||+.+.||++.+++|++++. .+++|+++|+++... .+.+.++ +++..++|+|+|++++
T Consensus 192 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~-------~~~~l~ivG~~~~~~------~~~~~~~~~~~~~~~V~~~g~~~~ 258 (363)
T cd04955 192 PGRYYLLVGRIVPENNIDDLIEAFSKSN-------SGKKLVIVGNADHNT------PYGKLLKEKAAADPRIIFVGPIYD 258 (363)
T ss_pred CCcEEEEEecccccCCHHHHHHHHHhhc-------cCceEEEEcCCCCcc------hHHHHHHHHhCCCCcEEEccccCh
Confidence 3456899999999999999999999872 379999999885443 3333333 5677789999999999
Q ss_pred HHHHHHHHhCcEEEEcCCC-CCCChHHHHHHHhCCceEeeCCC
Q 016535 347 RDLVKLLGGAVVGIHSMID-EHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~-E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+++.++|+.||++++||.. |+||++++|||+||+|||+++.+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 9999999999999999988 99999999999999999999863
No 19
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.98 E-value=1.9e-32 Score=238.09 Aligned_cols=289 Identities=17% Similarity=0.185 Sum_probs=218.1
Q ss_pred EeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCC-CeeEEeccccccccCCCC
Q 016535 39 FFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHP-PKVVHLYRRKWIEESTYP 117 (388)
Q Consensus 39 ~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 117 (388)
|+.|.. ||.|..++.+.+.|-+.| |.|+++|..+. ++.+++...+ .++++++.........++
T Consensus 9 ff~P~~---ggveshiy~lSq~li~lg--hkVvvithayg-----------~r~girylt~glkVyylp~~v~~n~tT~p 72 (426)
T KOG1111|consen 9 FFYPST---GGVESHIYALSQCLIRLG--HKVVVITHAYG-----------NRVGIRYLTNGLKVYYLPAVVGYNQTTFP 72 (426)
T ss_pred ccccCC---CChhhhHHHhhcchhhcC--CeEEEEecccc-----------CccceeeecCCceEEEEeeeeeecccchh
Confidence 555666 899999999999999999 89999998751 2235666554 477776553333322222
Q ss_pred ceehhhhhhhHHHHHHHHHhhcCCcEEEecCCccccc----chhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCcc
Q 016535 118 RFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY----PLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (388)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~----~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+ +..+-.....+.+.+..++|.++++.... ..++.+|.+++++-|.-.-..+.
T Consensus 73 tv------~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~---------------- 130 (426)
T KOG1111|consen 73 TV------FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADI---------------- 130 (426)
T ss_pred hh------hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccch----------------
Confidence 21 11111112233455788888776533211 13456789999988853211111
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCCC-CCCcE
Q 016535 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERS-TEYPA 271 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~~-~~~~~ 271 (388)
-...++.+..+.+...|.+||+|++.++...-+... ++++.+|||.++...|.|.+.... .+...
T Consensus 131 -------------~si~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~~S~~i~~ 197 (426)
T KOG1111|consen 131 -------------GSILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADKPSADIIT 197 (426)
T ss_pred -------------hhhhhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccccCCCCeeE
Confidence 112233456777889999999999998875433333 689999999999999988544433 33478
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
++.++|+.++||+|.+++++..+.+++ |+++|+++|+||.+. .+++..+++.+.++|.++|.++++++.+
T Consensus 198 ivv~sRLvyrKGiDll~~iIp~vc~~~----p~vrfii~GDGPk~i------~lee~lEk~~l~~rV~~lG~v~h~~Vr~ 267 (426)
T KOG1111|consen 198 IVVASRLVYRKGIDLLLEIIPSVCDKH----PEVRFIIIGDGPKRI------DLEEMLEKLFLQDRVVMLGTVPHDRVRD 267 (426)
T ss_pred EEEEeeeeeccchHHHHHHHHHHHhcC----CCeeEEEecCCcccc------hHHHHHHHhhccCceEEecccchHHHHH
Confidence 999999999999999999999999997 999999999999887 8999999999999999999999999999
Q ss_pred HHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 352 LLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 352 ~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.|...|+|++||..|.|+++++|||+||+|||+++.|
T Consensus 268 vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVG 304 (426)
T KOG1111|consen 268 VLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVG 304 (426)
T ss_pred HHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 9999999999999999999999999999999999864
No 20
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.98 E-value=2.2e-30 Score=250.04 Aligned_cols=322 Identities=14% Similarity=0.045 Sum_probs=201.4
Q ss_pred ceEEEec----cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhh---hce---------ecCC
Q 016535 35 TSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDR---FGV---------ELLH 98 (388)
Q Consensus 35 ~~I~~~~----p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~---~~i---------~~~~ 98 (388)
|+|+++. |....| |.+.++..|+++|.++| |+|.|+++.++. +.....+. ... ...+
T Consensus 1 m~i~~vs~e~~P~~k~G-Gl~~~v~~L~~~L~~~G--~~V~v~~p~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (466)
T PRK00654 1 MKILFVASECAPLIKTG-GLGDVVGALPKALAALG--HDVRVLLPGYPA----IREKLRDAQVVGRLDLFTVLFGHLEGD 73 (466)
T ss_pred CeEEEEEcccccCcccC-cHHHHHHHHHHHHHHCC--CcEEEEecCCcc----hhhhhcCceEEEEeeeEEEEEEeEEcC
Confidence 6788765 444445 99999999999999999 888899876521 11111000 000 0123
Q ss_pred CCeeEEeccccccccC-CCCceehhhhhhhHHHHHHHHHh--hcCCcEEEecCCcccccc-hhh-h-----cCCeEEEEE
Q 016535 99 PPKVVHLYRRKWIEES-TYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP-LAR-I-----FGCRVICYT 168 (388)
Q Consensus 99 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~~-~~~-~-----~~~~~i~~~ 168 (388)
+++++.+....+..+. .+.......++..........+. ..+||+||++.+.....+ +++ . .++|.++++
T Consensus 74 gv~v~~v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~Ti 153 (466)
T PRK00654 74 GVPVYLIDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTI 153 (466)
T ss_pred CceEEEEeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEc
Confidence 4555655443322211 12111111111100111122222 248999998865433333 222 2 268999999
Q ss_pred eccccch----hhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHH-hC--
Q 016535 169 HYPTISL----DMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-WG-- 241 (388)
Q Consensus 169 h~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~-~~-- 241 (388)
|.....- +...... -.. . .. ............+.+..++.+|.++++|+..++++.+. ++
T Consensus 154 H~~~~~g~~~~~~~~~~~-------~~~----~-~~-~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~g 220 (466)
T PRK00654 154 HNLAYQGLFPAEILGELG-------LPA----E-AF-HLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYG 220 (466)
T ss_pred CCCcCCCcCCHHHHHHcC-------CCh----H-Hc-CchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcC
Confidence 9754210 0000000 000 0 00 00000000001235667889999999999999888652 11
Q ss_pred -------CCCceEEEcCCCCCCCCccCCCC---------------------------CCCCCcEEEEEcccCCCCChHHH
Q 016535 242 -------IPDRIKRVYPPCDTSGLQVLPLE---------------------------RSTEYPAIISVAQFRPEKAHPLQ 287 (388)
Q Consensus 242 -------~~~~~~vi~ngvd~~~~~~~~~~---------------------------~~~~~~~il~vgrl~~~Kg~~~l 287 (388)
...++.+|+||+|.+.+.+.... ...+.+.++++||+.++||++.+
T Consensus 221 l~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~l 300 (466)
T PRK00654 221 LEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLV 300 (466)
T ss_pred hHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHH
Confidence 14689999999999877653210 01245789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCC
Q 016535 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEH 367 (388)
Q Consensus 288 l~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~ 367 (388)
++|++++.++ +++|+++|+| +..+.+++++++++++ +++.+.+..+.+++..+|++||++|+||.+|+
T Consensus 301 i~a~~~l~~~------~~~lvivG~g----~~~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~ 368 (466)
T PRK00654 301 LEALPELLEQ------GGQLVLLGTG----DPELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSRFEP 368 (466)
T ss_pred HHHHHHHHhc------CCEEEEEecC----cHHHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCC
Confidence 9999998653 7999999987 4445668888888876 45765433466667899999999999999999
Q ss_pred CChHHHHHHHhCCceEeeCCC
Q 016535 368 FGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 368 ~~~~vlEAma~G~PVI~~~~~ 388 (388)
||++++|||+||+|+|+++.+
T Consensus 369 ~gl~~lEAma~G~p~V~~~~g 389 (466)
T PRK00654 369 CGLTQLYALRYGTLPIVRRTG 389 (466)
T ss_pred chHHHHHHHHCCCCEEEeCCC
Confidence 999999999999999999864
No 21
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.98 E-value=7.9e-30 Score=242.27 Aligned_cols=302 Identities=19% Similarity=0.133 Sum_probs=203.6
Q ss_pred CCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhh
Q 016535 47 GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSF 126 (388)
Q Consensus 47 gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (388)
.||+++++.+++++|.++| |+|++++......... .....+++.+.++.............+....
T Consensus 20 ~GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (398)
T cd03800 20 TGGQNVYVLELARALARLG--HEVDIFTRRIDDALPP---------IVELAPGVRVVRVPAGPAEYLPKEELWPYLD--- 85 (398)
T ss_pred CCceeehHHHHHHHHhccC--ceEEEEEecCCcccCC---------ccccccceEEEecccccccCCChhhcchhHH---
Confidence 3699999999999999999 8888887653211110 0111122233332211100000000000110
Q ss_pred hHHHHHHHHHhhc--CCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhh
Q 016535 127 GSVYLSWEALCKF--TPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (388)
Q Consensus 127 ~~~~~~~~~l~~~--~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (388)
.........+.+. +||+||.+........ +++..++|.+.+.|......... . . ..
T Consensus 86 ~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--------------~-~-----~~ 145 (398)
T cd03800 86 EFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKRRH--------------L-G-----AA 145 (398)
T ss_pred HHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccccCCcc--------------c-c-----cc
Confidence 1111222334455 8999986643222112 44567889888888532100000 0 0 00
Q ss_pred hhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCC--------CCCCCCcEEE
Q 016535 203 CKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL--------ERSTEYPAII 273 (388)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~--------~~~~~~~~il 273 (388)
. ..........++..++.+|.++++|+..++.+.+.+.. ..++.+++||+|.+.+.+... ....+.++++
T Consensus 146 ~-~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (398)
T cd03800 146 D-TYEPARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRIL 224 (398)
T ss_pred c-ccchhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEE
Confidence 0 00111222356778899999999999999999887654 345889999999876654322 1124568999
Q ss_pred EEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016535 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (388)
Q Consensus 274 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~ 353 (388)
|+||+.+.||++.+++|+..+.++. ++++++++|++.......+...+++.++++++.+++.|+|+++.+++.++|
T Consensus 225 ~~gr~~~~k~~~~ll~a~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 300 (398)
T cd03800 225 AVGRLDPRKGIDTLIRAYAELPELR----ERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALY 300 (398)
T ss_pred EEcccccccCHHHHHHHHHHHHHhC----CCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHH
Confidence 9999999999999999999998774 789999999986654444456678888999998999999999999999999
Q ss_pred HhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 354 ~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+.||++++||..|++|++++|||++|+|||+++.
T Consensus 301 ~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~ 334 (398)
T cd03800 301 RAADVFVNPALYEPFGLTALEAMACGLPVVATAV 334 (398)
T ss_pred HhCCEEEecccccccCcHHHHHHhcCCCEEECCC
Confidence 9999999999999999999999999999999975
No 22
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=9.1e-30 Score=238.16 Aligned_cols=287 Identities=16% Similarity=0.098 Sum_probs=198.3
Q ss_pred eEEEeccccCC-CCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHPNTND-GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p~~~~-gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+.+.++... .||.++++.+++++|.++| ++|++++........ .... ....+..+... ....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~---~~~~--------~~~~~~~~~~~--~~~~ 65 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARG--IEVAVLCASPEPKGR---DEER--------NGHRVIRAPSL--LNVA 65 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCC--CceEEEecCCCCcch---hhhc--------cCceEEEeecc--cccc
Confidence 45555544432 5699999999999999999 777777765421111 0000 11112222110 0000
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
.... . ......+. +...++|++|.+........... ..++|.+.++|......
T Consensus 66 ~~~~---~----~~~~~~~~-~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------------- 120 (357)
T cd03795 66 STPF---S----PSFFKQLK-KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQ----------------- 120 (357)
T ss_pred cccc---c----HHHHHHHH-hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhcc-----------------
Confidence 0000 0 00111111 45678999877655433322221 34778888888522100
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC------CCC
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------ERS 266 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~------~~~ 266 (388)
......+.++++..++.+|.+++.|+...+.+...+....++.++|||+|...+.+... ...
T Consensus 121 ------------~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~~~~~~~ 188 (357)
T cd03795 121 ------------KLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEEAIWRRA 188 (357)
T ss_pred ------------chhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhhHhhcCC
Confidence 01223444567778899999999999999988776554578999999999876654332 122
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
.+++.++|+||+.+.||++.+++|++++ .+++++++|+|+.. +.+++.+++.+..++|.|+|++++
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l--------~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~V~~~g~v~~ 254 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAAL--------PDAPLVIVGEGPLE------AELEALAAALGLLDRVRFLGRLDD 254 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhc--------cCcEEEEEeCChhH------HHHHHHHHhcCCcceEEEcCCCCH
Confidence 4568999999999999999999999988 37999999976433 378888888889899999999999
Q ss_pred HHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeCCC
Q 016535 347 RDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+++.++|+.||++++||. .|++|++++|||+||+|||+++.+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~ 298 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIG 298 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCC
Confidence 999999999999999985 599999999999999999999853
No 23
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.98 E-value=9e-30 Score=238.16 Aligned_cols=279 Identities=18% Similarity=0.154 Sum_probs=199.0
Q ss_pred eccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCce
Q 016535 40 FHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRF 119 (388)
Q Consensus 40 ~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (388)
+.|.+..| |+|+++.+++++|.++| ++|++++.... ...... ..+++ +..+.... ... +
T Consensus 3 ~~~~~~~g-G~e~~~~~l~~~L~~~g--~~v~v~~~~~~-----~~~~~~-~~~~~------~~~~~~~~---~~~---~ 61 (355)
T cd03819 3 VLPALESG-GVERGTLELARALVERG--HRSLVASAGGR-----LVAELE-AEGSR------HIKLPFIS---KNP---L 61 (355)
T ss_pred cchhhccC-cHHHHHHHHHHHHHHcC--CEEEEEcCCCc-----hHHHHH-hcCCe------EEEccccc---cch---h
Confidence 34666655 99999999999999999 88888876431 111111 11221 11111100 000 0
Q ss_pred ehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCcccccc
Q 016535 120 TMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQS 197 (388)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
..+.......+.+.+.+||+||.++..+.... ..+..++|.+.++|.....
T Consensus 62 ----~~~~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----------------------- 114 (355)
T cd03819 62 ----RILLNVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSV----------------------- 114 (355)
T ss_pred ----hhHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhh-----------------------
Confidence 11112223344567789999987754332222 2345689999888852200
Q ss_pred chhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCC------------
Q 016535 198 NWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE------------ 264 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~------------ 264 (388)
.. +.+...+.+|.++++|+..++.+.+.++. ..++.++|||+|...+.+....
T Consensus 115 ---~~-----------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~ 180 (355)
T cd03819 115 ---NF-----------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWP 180 (355)
T ss_pred ---HH-----------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcC
Confidence 00 12334567999999999999999876665 4689999999998777543221
Q ss_pred CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016535 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (388)
Q Consensus 265 ~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v 344 (388)
..++.+.++++||+.++||++.+++++..++++. ++++++++|.++..+ .+.+.+.+.++++++.++|.|+|+
T Consensus 181 ~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~----~~~~l~ivG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~g~- 253 (355)
T cd03819 181 LPKGKPVILLPGRLTRWKGQEVFIEALARLKKDD----PDVHLLIVGDAQGRR--FYYAELLELIKRLGLQDRVTFVGH- 253 (355)
T ss_pred CCCCceEEEEeeccccccCHHHHHHHHHHHHhcC----CCeEEEEEECCcccc--hHHHHHHHHHHHcCCcceEEEcCC-
Confidence 1245678999999999999999999999998874 689999999876432 445667778888888889999999
Q ss_pred CHHHHHHHHHhCcEEEEcC-CCCCCChHHHHHHHhCCceEeeCCC
Q 016535 345 LYRDLVKLLGGAVVGIHSM-IDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 345 ~~~~l~~~~~~adv~v~ps-~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.+++.++|+.||++++|| ..|++|++++|||+||+|||++|.+
T Consensus 254 -~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~ 297 (355)
T cd03819 254 -CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG 297 (355)
T ss_pred -cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC
Confidence 489999999999999999 8999999999999999999999853
No 24
>PLN02316 synthase/transferase
Probab=99.97 E-value=1.3e-29 Score=254.98 Aligned_cols=308 Identities=14% Similarity=0.068 Sum_probs=202.2
Q ss_pred CccceEEEec----cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh--hhc---------eec
Q 016535 32 NRTTSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD--RFG---------VEL 96 (388)
Q Consensus 32 ~~~~~I~~~~----p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~--~~~---------i~~ 96 (388)
...|+|+++. |....| |.+.++..|+++|++.| |+|.|+++.++............ .+. ...
T Consensus 585 ~~pM~Il~VSsE~~P~aKvG-GLgDVV~sLp~ALa~~G--h~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 661 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVG-GLGDVVTSLSRAVQDLN--HNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGK 661 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcC-cHHHHHHHHHHHHHHcC--CEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEE
Confidence 3569999875 555555 99999999999999999 88999998763210000000000 000 001
Q ss_pred CCCCeeEEeccc-ccccc-CCCCceehhhhhhhHHHHHHHHHh--hcCCcEEEecCCcccccc-hhh-------hcCCeE
Q 016535 97 LHPPKVVHLYRR-KWIEE-STYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP-LAR-------IFGCRV 164 (388)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~~-~~~-------~~~~~~ 164 (388)
.+++.++.+... .+..+ ..+....-..++...-......+. ..+|||||++.......+ +++ ..++|+
T Consensus 662 ~~GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~ 741 (1036)
T PLN02316 662 VEGLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARV 741 (1036)
T ss_pred ECCcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCE
Confidence 123334443321 11111 011111111111111111122222 358999998865333333 222 235789
Q ss_pred EEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC--
Q 016535 165 ICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-- 242 (388)
Q Consensus 165 i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-- 242 (388)
++++|...+. . .+.+..+..+|.++++|+..++.+...+..
T Consensus 742 V~TiHnl~~~----------------------------------~---n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~ 784 (1036)
T PLN02316 742 VFTIHNLEFG----------------------------------A---NHIGKAMAYADKATTVSPTYSREVSGNSAIAP 784 (1036)
T ss_pred EEEeCCcccc----------------------------------h---hHHHHHHHHCCEEEeCCHHHHHHHHhccCccc
Confidence 9999963310 0 012345577999999999999998765432
Q ss_pred -CCceEEEcCCCCCCCCccCCC-----------------C-C----------CCCCcEEEEEcccCCCCChHHHHHHHHH
Q 016535 243 -PDRIKRVYPPCDTSGLQVLPL-----------------E-R----------STEYPAIISVAQFRPEKAHPLQLEAFSV 293 (388)
Q Consensus 243 -~~~~~vi~ngvd~~~~~~~~~-----------------~-~----------~~~~~~il~vgrl~~~Kg~~~ll~a~~~ 293 (388)
..++.+|+||+|++.+.+... . . ..+.+.+++|||+.++||++.+++|+..
T Consensus 785 ~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ 864 (1036)
T PLN02316 785 HLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWR 864 (1036)
T ss_pred ccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHH
Confidence 368999999999876654210 0 0 0235789999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChH
Q 016535 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGIS 371 (388)
Q Consensus 294 l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~ 371 (388)
+.+. +++|+++|+|+ +.++.+.++++++++++ +++|.|.|..+......+|+.||+||+||.+|+||++
T Consensus 865 ll~~------~~qlVIvG~Gp---d~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLv 935 (1036)
T PLN02316 865 TLER------NGQVVLLGSAP---DPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLT 935 (1036)
T ss_pred Hhhc------CcEEEEEeCCC---CHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHH
Confidence 8653 79999999986 33456788899998865 5789999887554445899999999999999999999
Q ss_pred HHHHHHhCCceEeeCCC
Q 016535 372 VVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 372 vlEAma~G~PVI~~~~~ 388 (388)
.+|||+||+|+|+++++
T Consensus 936 qLEAMa~GtppVvs~vG 952 (1036)
T PLN02316 936 QLTAMRYGSIPVVRKTG 952 (1036)
T ss_pred HHHHHHcCCCeEEEcCC
Confidence 99999999999999864
No 25
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=7.8e-30 Score=242.85 Aligned_cols=309 Identities=13% Similarity=0.130 Sum_probs=196.3
Q ss_pred ccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccc
Q 016535 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (388)
Q Consensus 33 ~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 112 (388)
++++|+.+.-.. +|.+..+.+++++|+++| |+|++++...... . .+.... .++.++.+...+
T Consensus 2 ~~~~~~~~~~~~---~~~~~R~~~~a~~L~~~G--~~V~ii~~~~~~~-~---~~~~~~------~~v~~~~~~~~~--- 63 (415)
T cd03816 2 KRKRVCVLVLGD---IGRSPRMQYHALSLAKHG--WKVDLVGYLETPP-H---DEILSN------PNITIHPLPPPP--- 63 (415)
T ss_pred CccEEEEEEecc---cCCCHHHHHHHHHHHhcC--ceEEEEEecCCCC-C---HHHhcC------CCEEEEECCCCc---
Confidence 456666664433 366666788999999999 7888887653111 1 111111 122333333211
Q ss_pred cCCCCceehhhhh----hhHHHH-HHHHHhhcCCcEEEecCCccccc---c--hhhhcCCeEEEEEeccccchhhhhhhh
Q 016535 113 ESTYPRFTMIGQS----FGSVYL-SWEALCKFTPLYYFDTSGYAFTY---P--LARIFGCRVICYTHYPTISLDMISRVR 182 (388)
Q Consensus 113 ~~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~Div~~~~~~~~~~---~--~~~~~~~~~i~~~h~p~~~~~~~~~~~ 182 (388)
...........+ +...+. .+.++...+||+||.+....... . +.+..++|.++++|..... ... ..
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~--~~~-~~ 139 (415)
T cd03816 64 -QRLNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYT--ILA-LK 139 (415)
T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHH--HHh-cc
Confidence 001111111111 111111 12234556899988665322211 1 2345789999988853211 000 00
Q ss_pred cCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCC
Q 016535 183 EGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP 262 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~ 262 (388)
+ . ......+.+.+++++.++.+|.++++|+.+++.+.+......++.+||||.+ ..|.+.+
T Consensus 140 -----~------------~-~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~~-~~f~p~~ 200 (415)
T cd03816 140 -----L------------G-ENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPP-EQFRPLP 200 (415)
T ss_pred -----c------------C-CCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCCH-HHceeCc
Confidence 0 0 0112234666778999999999999999999999874333688999999854 3333211
Q ss_pred CC-------------------------CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCC
Q 016535 263 LE-------------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDA--DLPRPRLQFVGSCRN 315 (388)
Q Consensus 263 ~~-------------------------~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~--~~~~~~l~ivG~~~~ 315 (388)
.. ..++...++++||+.+.||++.+++|++.+++.... ..|+++|+++|+|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~ 280 (415)
T cd03816 201 LEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL 280 (415)
T ss_pred HHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc
Confidence 00 012335778899999999999999999999763210 126899999998764
Q ss_pred CccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcC---CCCCCChHHHHHHHhCCceEeeCCC
Q 016535 316 KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM---IDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps---~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.+ +++++++++++++.+.+.|+++.+++.++|+.||+++.|+ ..|++|++++||||||+|||+++.+
T Consensus 281 ~~------~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~ 350 (415)
T cd03816 281 KE------KYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK 350 (415)
T ss_pred HH------HHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC
Confidence 43 8999999999974444557899999999999999999753 3578999999999999999999863
No 26
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.97 E-value=1.4e-29 Score=237.37 Aligned_cols=301 Identities=20% Similarity=0.165 Sum_probs=200.5
Q ss_pred eEEEeccccC-CCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHPNTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p~~~-~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+++.+... ..||+++++.+++++|.+.| ++|++++........ ... . ... ..........
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~--~~~-~--~~~------~~~~~~~~~~---- 63 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLG--HEVTVATTDAGGDPL--LVA-L--NGV------PVKLFSINVA---- 63 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcC--CcEEEEecCCCCccc--hhh-c--cCc------eeeecccchh----
Confidence 5788877763 56699999999999999999 778888765421111 000 0 000 0000000000
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCccccc-c---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccC
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY-P---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~-~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (388)
.........+......+......++|+++.+..+.... . .++..++|.+++.|........
T Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------- 128 (375)
T cd03821 64 --YGLNLARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWAL------------- 128 (375)
T ss_pred --hhhhhhhhccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEcccccccccc-------------
Confidence 00000000011111222233456899887665322221 2 2335688998888853210000
Q ss_pred CccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC-------
Q 016535 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------- 263 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~------- 263 (388)
. .......... ...++...+.++.+++.|+........... ..++.++|||+|.+.+.....
T Consensus 129 ----~----~~~~~~~~~~--~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 197 (375)
T cd03821 129 ----P----HKALKKRLAW--FLFERRLLQAAAAVHATSEQEAAEIRRLGL-KAPIAVIPNGVDIPPFAALPSRGRRRKF 197 (375)
T ss_pred ----c----cchhhhHHHH--HHHHHHHHhcCCEEEECCHHHHHHHHhhCC-cccEEEcCCCcChhccCcchhhhhhhhc
Confidence 0 0111111111 124567778899999999887777765433 568999999999877654321
Q ss_pred CCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 264 ~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
....++.+++++||+.+.||++.+++|+..+.++. ++++++++|.+.. .+...++..++++++.++|+|+|+
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~----~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~~v~~~g~ 269 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERF----PDWHLVIAGPDEG----GYRAELKQIAAALGLEDRVTFTGM 269 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhc----CCeEEEEECCCCc----chHHHHHHHHHhcCccceEEEcCC
Confidence 12245689999999999999999999999998875 7999999998733 334456666688899999999999
Q ss_pred CCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
++++++.++|+.||++++||..|+||++++|||+||+|||+++.
T Consensus 270 ~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~ 313 (375)
T cd03821 270 LYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK 313 (375)
T ss_pred CChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC
Confidence 99999999999999999999999999999999999999999985
No 27
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.97 E-value=1.3e-29 Score=245.68 Aligned_cols=326 Identities=15% Similarity=0.082 Sum_probs=206.0
Q ss_pred ceEEEeccc----cCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh------hhce----------
Q 016535 35 TSVAFFHPN----TNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD------RFGV---------- 94 (388)
Q Consensus 35 ~~I~~~~p~----~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~------~~~i---------- 94 (388)
|+|+++.+. .. .||.+.++..|+++|+++| |+|.|+++.+.. ...+..+ ...+
T Consensus 1 m~i~~vs~E~~P~~k-~GGl~~~v~~L~~aL~~~G--~~v~v~~p~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (473)
T TIGR02095 1 MRVLFVAAEMAPFAK-TGGLADVVGALPKALAALG--HDVRVLLPAYGC----IEDEVDDQVKVVELVDLSVGPRTLYVK 73 (473)
T ss_pred CeEEEEEeccccccC-cCcHHHHHHHHHHHHHHcC--CeEEEEecCCcC----hhhhhccCeEEEEEEEEeecCceeEEE
Confidence 678887544 33 4599999999999999999 888899877632 1111100 0000
Q ss_pred ---ecCCCCeeEEecccccccc--CCCC--ceehhhhhhhHHHHHHHHHh--hcCCcEEEecCCcccccc-hh-hhcC--
Q 016535 95 ---ELLHPPKVVHLYRRKWIEE--STYP--RFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP-LA-RIFG-- 161 (388)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~~-~~-~~~~-- 161 (388)
...+++.++.+.......+ ..+. ......++..........+. ..+||+||++.+.....+ ++ +..+
T Consensus 74 ~~~~~~~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~ 153 (473)
T TIGR02095 74 VFEGVVEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPN 153 (473)
T ss_pred EEEEEECCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCC
Confidence 1113445555443322222 1221 11111111111111222232 358999998865443333 23 2333
Q ss_pred -CeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHH-
Q 016535 162 -CRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL- 239 (388)
Q Consensus 162 -~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~- 239 (388)
+|.++++|.....-......... .... ..........+.. .-.+.+..++.+|.++++|+..++.+.+.
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~---~~~~-----~~~~~~~~~~~~~-~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~ 224 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSE---LGLP-----PEYFHMEGLEFYG-RVNFLKGGIVYADRVTTVSPTYAREILTPE 224 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHH---cCCC-----hHHcCchhhhcCC-chHHHHHHHHhCCcCeecCHhHHHHhcCCc
Confidence 89999999754210000000000 0000 0000000000000 11246777899999999999999888642
Q ss_pred hC---------CCCceEEEcCCCCCCCCccCCCC----------------------------CCCCCcEEEEEcccCCCC
Q 016535 240 WG---------IPDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAIISVAQFRPEK 282 (388)
Q Consensus 240 ~~---------~~~~~~vi~ngvd~~~~~~~~~~----------------------------~~~~~~~il~vgrl~~~K 282 (388)
++ .+.++.+|+||+|.+.+.+.... ...+.+.++++||+.++|
T Consensus 225 ~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~K 304 (473)
T TIGR02095 225 FGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQK 304 (473)
T ss_pred CCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCcccc
Confidence 11 13589999999998877643110 012568899999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEc
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~p 362 (388)
|++.+++|++.+.++ +++|+++|.| +.++.+++++++++++ +++.+.+..+.+++..+|++||++++|
T Consensus 305 g~~~li~a~~~l~~~------~~~lvi~G~g----~~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~p 372 (473)
T TIGR02095 305 GVDLLLAALPELLEL------GGQLVVLGTG----DPELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMP 372 (473)
T ss_pred ChHHHHHHHHHHHHc------CcEEEEECCC----CHHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeC
Confidence 999999999999754 6999999987 3445567888887764 579998888888899999999999999
Q ss_pred CCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 363 MIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 363 s~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
|.+|+||++++|||+||+|||+++.+
T Consensus 373 S~~E~~gl~~lEAma~G~pvI~s~~g 398 (473)
T TIGR02095 373 SRFEPCGLTQLYAMRYGTVPIVRRTG 398 (473)
T ss_pred CCcCCcHHHHHHHHHCCCCeEEccCC
Confidence 99999999999999999999999864
No 28
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=7.3e-30 Score=238.67 Aligned_cols=292 Identities=21% Similarity=0.221 Sum_probs=188.9
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++|++....||+|+++.++++.|.+. ++.+...+.... ...... .......+...+...+..
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~----~v~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~ 65 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA----DIFTLVDDPDKL-PRLLRL----------KKIRTSFIQKLPFARRRY 65 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC----CEEEEeecCCcc-chhhcC----------CceeechhhhchhhHhhH
Confidence 68999999987789999999999998753 333333222100 100000 000001111100000000
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCcccc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIA 195 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
..........++.+...++|+|+.++.+. ...+....+++.+.++|.|.... +.....+....
T Consensus 66 -------~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~--- 128 (351)
T cd03804 66 -------RKYLPLMPLAIEQFDLSGYDLVISSSHAV-AKGVITRPDQLHICYCHTPMRYA------WDLYHDYLKES--- 128 (351)
T ss_pred -------hhhCchhhHHHHhccccCCCEEEEcCcHH-hccccCCCCCcEEEEeCCchHHH------hcCchHhhhhc---
Confidence 00011111233345566899988765422 22233456788899999753110 00000000000
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEE
Q 016535 196 QSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISV 275 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~v 275 (388)
..............+..+++..++++|.++++|+.+++.+.+.++. +..+++||+|.+.+.+.. ..+..++++
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~--~~~vi~~~~d~~~~~~~~----~~~~~il~~ 201 (351)
T cd03804 129 -GLGKRLALRLLLHYLRIWDRRSAARVDYFIANSRFVARRIKKYYGR--DATVIYPPVDTDRFTPAE----EKEDYYLSV 201 (351)
T ss_pred -ccchhhHHHHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHHHhCC--CcEEECCCCCHhhcCcCC----CCCCEEEEE
Confidence 0000111122334455567888999999999999999999887653 567899999987775432 233679999
Q ss_pred cccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh
Q 016535 276 AQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 276 grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
|++.+.||++.+++|++.+ + ++|+++|+|++.+ .+++ +..++|+|+|+++++++.++|+.
T Consensus 202 G~~~~~K~~~~li~a~~~~--------~-~~l~ivG~g~~~~------~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 202 GRLVPYKRIDLAIEAFNKL--------G-KRLVVIGDGPELD------RLRA-----KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EcCccccChHHHHHHHHHC--------C-CcEEEEECChhHH------HHHh-----hcCCCEEEecCCCHHHHHHHHHh
Confidence 9999999999999999876 4 8999999875322 4444 34579999999999999999999
Q ss_pred CcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 356 AVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 356 adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
||++++||. |+||++++|||+||+|||+++.
T Consensus 262 ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~ 292 (351)
T cd03804 262 ARAFLFPAE-EDFGIVPVEAMASGTPVIAYGK 292 (351)
T ss_pred CCEEEECCc-CCCCchHHHHHHcCCCEEEeCC
Confidence 999999999 9999999999999999999985
No 29
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=6.9e-30 Score=237.03 Aligned_cols=270 Identities=16% Similarity=0.111 Sum_probs=187.5
Q ss_pred ceEEEecccc-----CCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecccc
Q 016535 35 TSVAFFHPNT-----NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (388)
Q Consensus 35 ~~I~~~~p~~-----~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 109 (388)
|||+++.+.. ...||+++++.+++++|.++| |+|++++.......... ..... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~~---------~~~~~--------~~~ 61 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG--HEVTLFASGDSKTAAPL---------VPVVP--------EPL 61 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC--ceEEEEecCCCCcccce---------eeccC--------CCc
Confidence 7899987764 256699999999999999999 88888887642111000 00000 000
Q ss_pred ccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCcccc
Q 016535 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (388)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~ 189 (388)
+.. . ...............+.+.+.++|+||.+....... .++..++|.+.+.|.......
T Consensus 62 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~v~~~h~~~~~~~------------- 122 (335)
T cd03802 62 RLD--A---PGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP-FARPLPVPVVTTLHGPPDPEL------------- 122 (335)
T ss_pred ccc--c---chhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh-hhcccCCCEEEEecCCCCccc-------------
Confidence 000 0 000001111222333456778999998776543322 455778899998886431000
Q ss_pred CCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCC
Q 016535 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEY 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~ 269 (388)
. . ........+.+++.|+..++.+... .++.++|||+|++.+.+. ..++
T Consensus 123 -----------~-------~-----~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~vi~ngvd~~~~~~~----~~~~ 171 (335)
T cd03802 123 -----------L-------K-----LYYAARPDVPFVSISDAQRRPWPPL----PWVATVHNGIDLDDYPFR----GPKG 171 (335)
T ss_pred -----------c-------h-----HHHhhCcCCeEEEecHHHHhhcccc----cccEEecCCcChhhCCCC----CCCC
Confidence 0 0 1223356788999999988877543 578899999998877642 1344
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcC-CCCcEEEccCCCHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK-VDGNVEFYKNLLYRD 348 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~-l~~~V~~~g~v~~~~ 348 (388)
..++++||+.+.||++.++++++. .+++++++|.+++.+ .+.+..++.. +.++|+|+|++++++
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~---------~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARR---------AGIPLKLAGPVSDPD------YFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHh---------cCCeEEEEeCCCCHH------HHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 789999999999999999998754 389999999886443 3334333332 457999999999999
Q ss_pred HHHHHHhCcEEEEcCC-CCCCChHHHHHHHhCCceEeeCCC
Q 016535 349 LVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 349 l~~~~~~adv~v~ps~-~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+.++|+.+|++++||. .|+||++++||||||+|||++|.+
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~ 277 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG 277 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC
Confidence 9999999999999997 599999999999999999999864
No 30
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=7.5e-30 Score=239.00 Aligned_cols=296 Identities=19% Similarity=0.112 Sum_probs=203.5
Q ss_pred eEEEeccccCC--CCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecccccccc
Q 016535 36 SVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (388)
Q Consensus 36 ~I~~~~p~~~~--gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (388)
||++...+... +||+++++.+++++|.+.| +++++++........ ...... .... . ......
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~--~~~~~~--~~~~------~----~~~~~~ 64 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLD--PEEVLLLLPGAPGLL--LLPLRA--ALRL------L----LRLPRR 64 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcC--CceEEEEecCccccc--cccchh--cccc------c----cccccc
Confidence 46666655543 6799999999999999999 555555544311111 000000 0000 0 000000
Q ss_pred CCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCcc
Q 016535 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (388)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+ ...+...+.......+.++|++|.++...... +..++|.+.++|........
T Consensus 65 ~~~------~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~---~~~~~~~i~~~hd~~~~~~~---------------- 119 (365)
T cd03809 65 LLW------GLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL---RLRGVPVVVTIHDLIPLRFP---------------- 119 (365)
T ss_pred ccc------chhhHHHHHHHHHhhhcCCCeeeecccccCcc---cCCCCCEEEEeccchhhhCc----------------
Confidence 000 11111122223334557899998776533222 66789999999953210000
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCC------CCC
Q 016535 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL------ERS 266 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~------~~~ 266 (388)
..........+.++++..++.+|.++++|+..++.+.+.++. ..++.+++||+|...+..... ...
T Consensus 120 -------~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 192 (365)
T cd03809 120 -------EYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAEVLRALYL 192 (365)
T ss_pred -------ccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHHHHHHhcC
Confidence 000011234445567888899999999999999999988764 468899999999877654321 222
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
.++..++++|++.+.||++.+++++..+.+.. ++++|+++|.+.... ....+..++.+..++|+++|.++.
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~----~~~~l~i~G~~~~~~-----~~~~~~~~~~~~~~~v~~~g~~~~ 263 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAFARLPAKG----PDPKLVIVGKRGWLN-----EELLARLRELGLGDRVRFLGYVSD 263 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHHHHHHHhc----CCCCEEEecCCcccc-----HHHHHHHHHcCCCCeEEECCCCCh
Confidence 45689999999999999999999999998875 689999999875443 123333366788899999999999
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+++.++|+.||++++||..|++|++++|||++|+|||+++.+
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 305 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNIS 305 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCC
Confidence 999999999999999999999999999999999999999863
No 31
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=3.1e-29 Score=243.81 Aligned_cols=326 Identities=15% Similarity=0.054 Sum_probs=205.4
Q ss_pred eEEEeccccC---CCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhh---------------ce---
Q 016535 36 SVAFFHPNTN---DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRF---------------GV--- 94 (388)
Q Consensus 36 ~I~~~~p~~~---~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~---------------~i--- 94 (388)
+|+++.+... ..||.+.++..|+++|+++| |+|.|+++.++. ......... .+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G--~~V~Vi~p~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLG--HDVRVIMPKYGR----ILDELRGQLLVLRLFGVPVGGRPEYVGVF 74 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCC--CeEEEEecCCcc----hhhHhccCeEEEEEEeeccCCceeEEEEE
Confidence 4666654421 34599999999999999999 889999977531 111111000 00
Q ss_pred -ecCCCCeeEEeccccccccCC------CCceehhhhhhhHHHHHHHHHhh--cCCcEEEecCCcccccc-hhh-h----
Q 016535 95 -ELLHPPKVVHLYRRKWIEEST------YPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LAR-I---- 159 (388)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~--~~~Div~~~~~~~~~~~-~~~-~---- 159 (388)
...++++++.+....+..+.. ........++..........+.+ .+||+||++.+.....+ ..+ .
T Consensus 75 ~~~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~ 154 (476)
T cd03791 75 ELPVDGVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADP 154 (476)
T ss_pred EEEeCCceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccc
Confidence 011344555554322222111 11111111111111222333443 68999998765433333 222 3
Q ss_pred --cCCeEEEEEeccccchhh-hhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHH
Q 016535 160 --FGCRVICYTHYPTISLDM-ISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHI 236 (388)
Q Consensus 160 --~~~~~i~~~h~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l 236 (388)
.++|.++++|........ ......... ... . ..............+++..++.+|.++++|+..++.+
T Consensus 155 ~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~----~~~----~-~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i 225 (476)
T cd03791 155 FFKNIKTVFTIHNLAYQGVFPLEALEDLGL----PWE----E-LFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREI 225 (476)
T ss_pred cCCCCCEEEEeCCCCCCCCCCHHHHHHcCC----Ccc----c-hhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHh
Confidence 378999999975421100 000000000 000 0 0000000000112357788899999999999999888
Q ss_pred HHH---------hC-CCCceEEEcCCCCCCCCccCCCCC----------------------------CCCCcEEEEEccc
Q 016535 237 EKL---------WG-IPDRIKRVYPPCDTSGLQVLPLER----------------------------STEYPAIISVAQF 278 (388)
Q Consensus 237 ~~~---------~~-~~~~~~vi~ngvd~~~~~~~~~~~----------------------------~~~~~~il~vgrl 278 (388)
.+. .. ...++.+|+||+|.+.+.+..... .++.+.++|+||+
T Consensus 226 ~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl 305 (476)
T cd03791 226 LTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRL 305 (476)
T ss_pred CCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeec
Confidence 641 11 146899999999988776532110 1456889999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcE
Q 016535 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 279 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv 358 (388)
.++||++.+++|+..+.++ +++|+++|.| +.++.+.++++++++ .+++.+.+..+.+++..+|+.||+
T Consensus 306 ~~~Kg~~~li~a~~~l~~~------~~~lvi~G~g----~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv 373 (476)
T cd03791 306 TEQKGIDLLLEALPELLEL------GGQLVILGSG----DPEYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADF 373 (476)
T ss_pred cccccHHHHHHHHHHHHHc------CcEEEEEecC----CHHHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCE
Confidence 9999999999999999765 5999999987 445566777777765 468888777778888899999999
Q ss_pred EEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 359 GIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+++||.+|+||++++|||+||+|||+++.+
T Consensus 374 ~l~pS~~E~~gl~~lEAma~G~pvI~~~~g 403 (476)
T cd03791 374 FLMPSRFEPCGLTQMYAMRYGTVPIVRATG 403 (476)
T ss_pred EECCCCCCCCcHHHHHHhhCCCCCEECcCC
Confidence 999999999999999999999999999864
No 32
>PRK14099 glycogen synthase; Provisional
Probab=99.97 E-value=4.8e-29 Score=240.28 Aligned_cols=329 Identities=15% Similarity=0.045 Sum_probs=203.0
Q ss_pred ccceEEEec----cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhh--hhhcee----------c
Q 016535 33 RTTSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAV--DRFGVE----------L 96 (388)
Q Consensus 33 ~~~~I~~~~----p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~--~~~~i~----------~ 96 (388)
++|+|+|+. |....| |.+-++..|.++|+++| |+|.|+++.+..-... ..... ..+... .
T Consensus 2 ~~~~il~v~~E~~p~~k~g-gl~dv~~~lp~~l~~~g--~~v~v~~P~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTG-GLADVAGALPAALKAHG--VEVRTLVPGYPAVLAG-IEDAEQVHSFPDLFGGPARLLAAR 77 (485)
T ss_pred CCcEEEEEEeccccccCCC-cHHHHHHHHHHHHHHCC--CcEEEEeCCCcchhhh-hcCceEEEEEeeeCCceEEEEEEE
Confidence 569999974 777777 99999999999999999 7888888865321000 00000 001100 0
Q ss_pred CCCCeeEEeccccccccC--CCC------ceehhhhhhhHHHHHHHHH----hhcCCcEEEecCCcccccc-hhh---hc
Q 016535 97 LHPPKVVHLYRRKWIEES--TYP------RFTMIGQSFGSVYLSWEAL----CKFTPLYYFDTSGYAFTYP-LAR---IF 160 (388)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~l----~~~~~Div~~~~~~~~~~~-~~~---~~ 160 (388)
.+++.++.+....+..+. .+. +..-..++...-.....++ .+.+|||||++.+....++ +.+ ..
T Consensus 78 ~~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~ 157 (485)
T PRK14099 78 AGGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRP 157 (485)
T ss_pred eCCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCC
Confidence 123344444332222221 111 0011111111111111222 2468999998875444444 222 23
Q ss_pred CCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHh
Q 016535 161 GCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLW 240 (388)
Q Consensus 161 ~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~ 240 (388)
++|.++++|...+........... .+ -. ......-...++.. ..+.+..++.+|.++++|+..++++.+.+
T Consensus 158 ~~~~V~TiHn~~~qg~~~~~~~~~-~~--~~-----~~~~~~~~~~~~~~-~~~~k~~i~~ad~vitVS~~~a~ei~~~~ 228 (485)
T PRK14099 158 APGTVFTIHNLAFQGQFPRELLGA-LG--LP-----PSAFSLDGVEYYGG-IGYLKAGLQLADRITTVSPTYALEIQGPE 228 (485)
T ss_pred CCCEEEeCCCCCCCCcCCHHHHHH-cC--CC-----hHHcCchhhhhCCC-ccHHHHHHHhcCeeeecChhHHHHHhccc
Confidence 578999999643211000000000 00 00 00000000000000 02467778899999999999999997532
Q ss_pred -C---------CCCceEEEcCCCCCCCCccCCCC----------------------------CCCCCcEEEEEcccCCCC
Q 016535 241 -G---------IPDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAIISVAQFRPEK 282 (388)
Q Consensus 241 -~---------~~~~~~vi~ngvd~~~~~~~~~~----------------------------~~~~~~~il~vgrl~~~K 282 (388)
+ ...++.+|+||+|++.+.+.... ...+.+.++++||+.++|
T Consensus 229 ~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~K 308 (485)
T PRK14099 229 AGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQK 308 (485)
T ss_pred CCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccc
Confidence 1 14689999999998877653210 012356888999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHH-HhCcEEE
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRDLVKLL-GGAVVGI 360 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V-~~~g~v~~~~l~~~~-~~adv~v 360 (388)
|++.+++|+..+.++ +++|+++|+| +.++.+++++++++++ +++ .++|+ ++++..+| +.||++|
T Consensus 309 G~d~Li~A~~~l~~~------~~~lvivG~G----~~~~~~~l~~l~~~~~--~~v~~~~G~--~~~l~~~~~a~aDifv 374 (485)
T PRK14099 309 GLDLLLEALPTLLGE------GAQLALLGSG----DAELEARFRAAAQAYP--GQIGVVIGY--DEALAHLIQAGADALL 374 (485)
T ss_pred cHHHHHHHHHHHHhc------CcEEEEEecC----CHHHHHHHHHHHHHCC--CCEEEEeCC--CHHHHHHHHhcCCEEE
Confidence 999999999998643 7999999987 4455668888888764 455 68898 48899887 5799999
Q ss_pred EcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 361 HSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 361 ~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+||.+|+||++++|||+||+|+|+++++
T Consensus 375 ~PS~~E~fGl~~lEAma~G~ppVvs~~G 402 (485)
T PRK14099 375 VPSRFEPCGLTQLCALRYGAVPVVARVG 402 (485)
T ss_pred ECCccCCCcHHHHHHHHCCCCcEEeCCC
Confidence 9999999999999999999988888753
No 33
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=238.54 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=135.2
Q ss_pred ccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC-------CCCCCcEEEEEcccCCCCChHHHHHHHH
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------RSTEYPAIISVAQFRPEKAHPLQLEAFS 292 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~-------~~~~~~~il~vgrl~~~Kg~~~ll~a~~ 292 (388)
..++.++++|++.++.+.+.++ ..++.++|||+|.+.+.+.... ...+..+++|+||+.+.||++.+++|++
T Consensus 138 ~~~~~ii~~S~~~~~~~~~~~~-~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~ 216 (380)
T PRK15484 138 DKNAKIIVPSQFLKKFYEERLP-NADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFE 216 (380)
T ss_pred ccCCEEEEcCHHHHHHHHhhCC-CCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHH
Confidence 3578999999999999987655 5678999999998766542211 1124578999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEeCCCCC---ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC-CCCC
Q 016535 293 VALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI-DEHF 368 (388)
Q Consensus 293 ~l~~~~~~~~~~~~l~ivG~~~~~---~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~-~E~~ 368 (388)
.+.++. |+++|+++|+++.. +..++.+++++++++++ +++.|+|.++.+++.++|+.||++|+||. .|+|
T Consensus 217 ~l~~~~----p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 217 KLATAH----SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHhC----CCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 998775 89999999987643 22356667777877765 57999999999999999999999999996 5999
Q ss_pred ChHHHHHHHhCCceEeeCCC
Q 016535 369 GISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 369 ~~~vlEAma~G~PVI~~~~~ 388 (388)
|++++|||+||+|||+++.+
T Consensus 291 ~~~~lEAma~G~PVI~s~~g 310 (380)
T PRK15484 291 CMVAVEAMAAGKPVLASTKG 310 (380)
T ss_pred ccHHHHHHHcCCCEEEeCCC
Confidence 99999999999999999864
No 34
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=3.2e-29 Score=241.72 Aligned_cols=328 Identities=16% Similarity=0.102 Sum_probs=207.0
Q ss_pred ceEEEec----cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhH--HHHh--hhhhceecC---------
Q 016535 35 TSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL--LARA--VDRFGVELL--------- 97 (388)
Q Consensus 35 ~~I~~~~----p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~--~~~~--~~~~~i~~~--------- 97 (388)
|+|+|+. |....| |.+-++..|.++|+++| |+|.|+++.+..-.... ..+. ...+.+.+.
T Consensus 6 ~~il~v~~E~~p~~k~G-gl~dv~~~Lp~al~~~g--~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVS-ALADFMASFPQALEEEG--FEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVK 82 (489)
T ss_pred cEEEEEeecchhhcccc-hHHHHHHHHHHHHHHCC--CeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEE
Confidence 9999974 776676 99999999999999999 88888888753111100 0000 000111111
Q ss_pred ----C--CCeeEEeccccccccC-CCCc------e-ehhhhhhhHHHHHHHHHh--hcCCcEEEecCCcccccc-hhh-h
Q 016535 98 ----H--PPKVVHLYRRKWIEES-TYPR------F-TMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP-LAR-I 159 (388)
Q Consensus 98 ----~--~~~~~~~~~~~~~~~~-~~~~------~-~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~~-~~~-~ 159 (388)
+ ++.++.+....+..+. .+.. + .-..++..........+. ..+||+||++.+.....+ +.+ .
T Consensus 83 ~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~ 162 (489)
T PRK14098 83 VTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTV 162 (489)
T ss_pred EecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHH
Confidence 0 1222322222221111 1110 0 111111111111222233 258999998865444444 222 2
Q ss_pred -------cCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhH
Q 016535 160 -------FGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWT 232 (388)
Q Consensus 160 -------~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~ 232 (388)
.++|.++++|..... ..... . .+. .+....+..... .+. ....+.+..+..||.++++|+..
T Consensus 163 ~~~~~~~~~~~~V~TiHn~~~q-g~~~~-~----~~~---~~~~~~~~~~~~-~~~-~~~n~lk~~i~~ad~VitVS~~~ 231 (489)
T PRK14098 163 YADHEFFKDIKTVLTIHNVYRQ-GVLPF-K----VFQ---KLLPEEVCSGLH-REG-DEVNMLYTGVEHADLLTTTSPRY 231 (489)
T ss_pred hhhccccCCCCEEEEcCCCccc-CCCCH-H----HHH---HhCCHHhhhhhh-hcC-CcccHHHHHHHhcCcceeeCHHH
Confidence 278999999964310 00000 0 000 000000000000 000 01134677888999999999999
Q ss_pred HHHHHHH----hCC-------CCceEEEcCCCCCCCCccCCCC----------------------------CCCCCcEEE
Q 016535 233 QSHIEKL----WGI-------PDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAII 273 (388)
Q Consensus 233 ~~~l~~~----~~~-------~~~~~vi~ngvd~~~~~~~~~~----------------------------~~~~~~~il 273 (388)
++++.+. ++. ..++.+|+||+|++.+.+.... ..++.+.++
T Consensus 232 a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~ 311 (489)
T PRK14098 232 AEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVG 311 (489)
T ss_pred HHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEE
Confidence 9998752 121 4689999999999877653210 012457899
Q ss_pred EEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016535 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (388)
Q Consensus 274 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~ 353 (388)
++||+.++||++.+++|+..+.+. +++|+++|+| +.++.+++++++++++ ++|.|.|.++++++.++|
T Consensus 312 ~vgRl~~~KG~d~li~a~~~l~~~------~~~lvivG~G----~~~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 312 VIINFDDFQGAELLAESLEKLVEL------DIQLVICGSG----DKEYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred EeccccccCcHHHHHHHHHHHHhc------CcEEEEEeCC----CHHHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHH
Confidence 999999999999999999998643 7999999987 4445668888888864 689999999999999999
Q ss_pred HhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 354 ~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++||++|+||..|+||++.+|||+||+|+|+++.+
T Consensus 380 a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~G 414 (489)
T PRK14098 380 AGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGG 414 (489)
T ss_pred HhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCC
Confidence 99999999999999999999999999999998764
No 35
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=2.1e-29 Score=235.46 Aligned_cols=284 Identities=16% Similarity=0.130 Sum_probs=202.6
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++.+..+. |+++.+++++++|.++| ++|++++........ .. .. ...... . ..+.
T Consensus 1 ki~~~~~~~~~--~~~~~~~~~~~~L~~~g--~~v~v~~~~~~~~~~--~~---~~-~~~~~~--~------~~~~---- 58 (355)
T cd03799 1 KIAYLVKEFPR--LSETFILREILALEAAG--HEVEIFSLRPPEDTL--VH---PE-DRAELA--R------TRYL---- 58 (355)
T ss_pred CEEEECCCCCC--cchHHHHHHHHHHHhCC--CeEEEEEecCccccc--cc---cc-cccccc--c------hHHH----
Confidence 58888887743 48899999999999999 788888765421100 00 00 000000 0 0000
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
......+.......+.+.+.++|++|.+........ ..+..+.+.+.+.|.......
T Consensus 59 ----~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 118 (355)
T cd03799 59 ----ARSLALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRS---------------- 118 (355)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEeccccccc----------------
Confidence 000111112222333456679999987755322222 222456888888885431100
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCCCCCCcE
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPA 271 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~~~~~~~ 271 (388)
.. .+.++..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.+.......++..
T Consensus 119 ---------~~--------~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~~~~~~~~~ 181 (355)
T cd03799 119 ---------PD--------AIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPPPGEPLR 181 (355)
T ss_pred ---------Cc--------hHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccccccCCCeE
Confidence 00 0245666788999999999999999887433 57899999999987776543122245688
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
++++|++.+.||++.++++++.+.++. ++++++++|.++..+ .+++.++++++.++|.+.|+++.+++.+
T Consensus 182 i~~~g~~~~~k~~~~l~~~~~~l~~~~----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 251 (355)
T cd03799 182 ILSVGRLVEKKGLDYLLEALALLKDRG----IDFRLDIVGDGPLRD------ELEALIAELGLEDRVTLLGAKSQEEVRE 251 (355)
T ss_pred EEEEeeeccccCHHHHHHHHHHHhhcC----CCeEEEEEECCccHH------HHHHHHHHcCCCCeEEECCcCChHHHHH
Confidence 999999999999999999999998764 799999999875443 7888888888889999999999999999
Q ss_pred HHHhCcEEEEcCCC------CCCChHHHHHHHhCCceEeeCCC
Q 016535 352 LLGGAVVGIHSMID------EHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 352 ~~~~adv~v~ps~~------E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+|++||++++||.. |++|++++|||++|+|||+++.+
T Consensus 252 ~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~ 294 (355)
T cd03799 252 LLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS 294 (355)
T ss_pred HHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC
Confidence 99999999999998 99999999999999999999853
No 36
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=1.2e-29 Score=238.43 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=169.2
Q ss_pred HHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHH
Q 016535 135 ALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (388)
Q Consensus 135 ~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (388)
.+++.+||+||.+.+...... +++..++|.+++.|..+....... .... .++.+.
T Consensus 77 ~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~--------------------~~~~---~~~~~~ 133 (367)
T cd05844 77 LLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLAL--------------------LLRS---RWALYA 133 (367)
T ss_pred HHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccchh--------------------hccc---chhHHH
Confidence 466789999987654322111 445778999999995432111000 0000 022334
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHH
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFS 292 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~ 292 (388)
.+++...+.+|.++++|+.+++.+.+......++.+++||+|.+.+.+.. ...++..++|+|++.+.||++.+++|++
T Consensus 134 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~--~~~~~~~i~~~G~~~~~K~~~~li~a~~ 211 (367)
T cd05844 134 RRRRRLARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPAT--PARRPPRILFVGRFVEKKGPLLLLEAFA 211 (367)
T ss_pred HHHHHHHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCC--CCCCCcEEEEEEeeccccChHHHHHHHH
Confidence 45677788999999999999999987633346789999999987765432 2244578999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC------CC
Q 016535 293 VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI------DE 366 (388)
Q Consensus 293 ~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~------~E 366 (388)
.+.++. ++++|+++|.++ +.+++++.++++++.++|+|+|.++.+++.++|+.||++++||. .|
T Consensus 212 ~l~~~~----~~~~l~ivG~g~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E 281 (367)
T cd05844 212 RLARRV----PEVRLVIIGDGP------LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAE 281 (367)
T ss_pred HHHHhC----CCeEEEEEeCch------HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCcc
Confidence 998775 799999999653 33478889999888899999999999999999999999999996 59
Q ss_pred CCChHHHHHHHhCCceEeeCCC
Q 016535 367 HFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 367 ~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+||++++|||+||+|||+++.+
T Consensus 282 ~~~~~~~EA~a~G~PvI~s~~~ 303 (367)
T cd05844 282 GLPVVLLEAQASGVPVVATRHG 303 (367)
T ss_pred CCchHHHHHHHcCCCEEEeCCC
Confidence 9999999999999999999863
No 37
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=2e-29 Score=233.92 Aligned_cols=288 Identities=22% Similarity=0.244 Sum_probs=202.8
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++.+.... ||+++++.+++++|.+.| ++|.+++........... .. ... ........ ...
T Consensus 1 kIl~~~~~~~~-gG~~~~~~~l~~~l~~~g--~~v~v~~~~~~~~~~~~~---~~--~~~---~~~~~~~~------~~~ 63 (353)
T cd03811 1 KILFVIPSLGG-GGAERVLLNLANGLDKRG--YDVTLVVLRDEGDYLELL---PS--NVK---LIPVRVLK------LKS 63 (353)
T ss_pred CeEEEeecccC-CCcchhHHHHHHHHHhcC--ceEEEEEcCCCCcccccc---cc--chh---hhceeeee------ccc
Confidence 58888888874 599999999999999999 777777765421110000 00 000 00000000 000
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCC-cccccc-hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCcc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSG-YAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~-~~~~~~-~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
. ..........+.+.+.+||+++.+.. ...... +....++|.+.++|........
T Consensus 64 ~-------~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------- 120 (353)
T cd03811 64 L-------RDLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELK---------------- 120 (353)
T ss_pred c-------cchhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhc----------------
Confidence 0 00111222334566779999877765 221111 2222268999999964311000
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCC-----CCC
Q 016535 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-----RST 267 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~-----~~~ 267 (388)
.. .... .+++..++.+|.+++.|+..++.+.+.++. ..++.++|||+|...+.+.... ...
T Consensus 121 -------~~---~~~~---~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 187 (353)
T cd03811 121 -------RK---LRLL---LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPLELGIPP 187 (353)
T ss_pred -------cc---hhHH---HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhhhcCCCC
Confidence 00 0000 357778899999999999999999988775 4689999999998776544322 135
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
+...++++|++.+.||++.+++|++.+.++. ++++|+++|.++..+ .+++.++++++.++|.+.|.+ +
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~v~~~g~~--~ 255 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEG----PDARLVILGDGPLRE------ELEALAKELGLADRVHFLGFQ--S 255 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcC----CCceEEEEcCCccHH------HHHHHHHhcCCCccEEEeccc--C
Confidence 5689999999999999999999999998774 799999999765433 677888899998999999997 6
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++.++|+.||++++||..|++|++++|||++|+|||++|.+
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~ 296 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP 296 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC
Confidence 78999999999999999999999999999999999999864
No 38
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.97 E-value=3.4e-29 Score=251.26 Aligned_cols=339 Identities=14% Similarity=0.102 Sum_probs=213.3
Q ss_pred cCccceEEEecccc------------CCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCc-h-h--HHHHhh-----
Q 016535 31 RNRTTSVAFFHPNT------------NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFP-D-S--LLARAV----- 89 (388)
Q Consensus 31 ~~~~~~I~~~~p~~------------~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~-~-~--~~~~~~----- 89 (388)
+.++|.|+++.+.- ...||...++.+|+++|.+.|.-++|.++|.....+. . . -..+..
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 45678888874221 1236889999999999999864458899987542110 0 0 000000
Q ss_pred hh--hceecCCCCeeEEecccc---ccccC-CCCceehhhhhhhHHHHHH-HHH-h------hcCCcEEEecCCcccccc
Q 016535 90 DR--FGVELLHPPKVVHLYRRK---WIEES-TYPRFTMIGQSFGSVYLSW-EAL-C------KFTPLYYFDTSGYAFTYP 155 (388)
Q Consensus 90 ~~--~~i~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~-~~l-~------~~~~Div~~~~~~~~~~~ 155 (388)
+. ......++..+++++-++ +++.. .|+++..+...+....... +.+ . ...||+||.+........
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 00 011123345555654321 22221 2333322222221111100 000 1 114999997754332222
Q ss_pred --hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccc-hhhhhhhHH---HHHHHHHHHHHhccCCEEEECC
Q 016535 156 --LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSN-WLSQCKIVY---YTFFSWMYGLVGSCADLAMVNS 229 (388)
Q Consensus 156 --~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~a~~ii~~S 229 (388)
+++..++|.+++.|... ..+... .+.... ....+...| +++ ..+..++..||.+|+.|
T Consensus 326 ~~L~~~lgVP~V~T~HSLg-------r~K~~~-------ll~~g~~~~~~~~~~y~~~~Ri--~~Ee~~l~~Ad~VIasT 389 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLG-------RDKLEQ-------LLKQGRMSKEEINSTYKIMRRI--EAEELSLDASEIVITST 389 (1050)
T ss_pred HHHHHhhCCCEEEECccch-------hhhhhh-------hcccccccccccccccchHHHH--HHHHHHHHhcCEEEEeC
Confidence 44578999999999632 011000 000000 000000011 122 25788999999999999
Q ss_pred hhHHHHHHHHhCC-----------------------CCceEEEcCCCCCCCCccCCCCC---------------------
Q 016535 230 SWTQSHIEKLWGI-----------------------PDRIKRVYPPCDTSGLQVLPLER--------------------- 265 (388)
Q Consensus 230 ~~~~~~l~~~~~~-----------------------~~~~~vi~ngvd~~~~~~~~~~~--------------------- 265 (388)
+..++.+...|.. ..++.|||||+|+..|.+.....
T Consensus 390 ~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1050)
T TIGR02468 390 RQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSE 469 (1050)
T ss_pred HHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHH
Confidence 9999876666531 13889999999998887632110
Q ss_pred ------CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-----cHHHHHHHHHHHHhcCC
Q 016535 266 ------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS-----DEERLQSLKDKSIELKV 334 (388)
Q Consensus 266 ------~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~-----~~~~~~~l~~~~~~~~l 334 (388)
.++++.|+++||+.++||++.+|+|+..+.+... .+++. +++|++++.+ ..++..+++++++++++
T Consensus 470 l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~--~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL 546 (1050)
T TIGR02468 470 IMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRE--LANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL 546 (1050)
T ss_pred HHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhcc--CCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC
Confidence 1345689999999999999999999999965421 14665 4667664321 23456789999999999
Q ss_pred CCcEEEccCCCHHHHHHHHHhC----cEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGA----VVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~a----dv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.++|.|+|++++++++++|+.| |+||+||.+|+||++++||||||+|||+|+.+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG 604 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG 604 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC
Confidence 9999999999999999999988 69999999999999999999999999999864
No 39
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=6.4e-29 Score=234.68 Aligned_cols=314 Identities=12% Similarity=0.066 Sum_probs=184.6
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|||+++.-.++.| |+|+++.+|++.|.++|+++++........ .. .+ ..+...........+....
T Consensus 1 mkil~i~~~l~~G-Gaeri~~~L~~~l~~~G~~~~i~~~~~~~~--~~---~~--------~~~~~~~~~~~~~~~~~~~ 66 (405)
T PRK10125 1 MNILQFNVRLAEG-GAAGVALDLHQRALQQGLASHFVYGYGKGG--KE---SV--------SHQNYPQVIKHTPRMTAMA 66 (405)
T ss_pred CeEEEEEeeecCC-chhHHHHHHHHHHHhcCCeEEEEEecCCCc--cc---cc--------ccCCcceEEEecccHHHHH
Confidence 7899998878777 999999999999999995544444333221 10 00 0010000000000000000
Q ss_pred CCCceehh-hhhhhHHHHHHHHH-hhcCCcEEEecCCccc--ccc-hh--------hhcCCeEEEEEeccccchhhhhh-
Q 016535 115 TYPRFTMI-GQSFGSVYLSWEAL-CKFTPLYYFDTSGYAF--TYP-LA--------RIFGCRVICYTHYPTISLDMISR- 180 (388)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~l-~~~~~Div~~~~~~~~--~~~-~~--------~~~~~~~i~~~h~p~~~~~~~~~- 180 (388)
.....+.. ...+.......+.+ .+.+|||||.+.-... .++ +. +..++|+++++|........+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~ 146 (405)
T PRK10125 67 NIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFT 146 (405)
T ss_pred HHHHHHhcchhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCC
Confidence 00000000 01112222333334 5779999975533221 222 11 23468999999964422111110
Q ss_pred --hhcCCccccCCcccccc--chhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCC
Q 016535 181 --VREGSSMYNNNASIAQS--NWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS 256 (388)
Q Consensus 181 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~ 256 (388)
.......|...+.+... ......++.+.+. ....+...+.++.++++|++.++.+.+.++ ..++.+||||+|++
T Consensus 147 ~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k-~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~-~~~i~vI~NGid~~ 224 (405)
T PRK10125 147 DGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGK-RQLFREMLALGCQFISPSQHVADAFNSLYG-PGRCRIINNGIDMA 224 (405)
T ss_pred cccccccccCCCCCCccCCCCCccchHHHHHHHH-HHHHHHHhhcCcEEEEcCHHHHHHHHHHcC-CCCEEEeCCCcCcc
Confidence 00111112222121100 0011111111111 112333345678999999999999887766 46899999999964
Q ss_pred CCc---cC-CCCCCCCCcEEEEEccc--CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHH
Q 016535 257 GLQ---VL-PLERSTEYPAIISVAQF--RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI 330 (388)
Q Consensus 257 ~~~---~~-~~~~~~~~~~il~vgrl--~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~ 330 (388)
.+. +. ......++..++++|+. .+.||++.+++|+..+ .++++|+++|.+++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l-------~~~~~L~ivG~g~~~~------------- 284 (405)
T PRK10125 225 TEAILAELPPVRETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL-------GDKIELHTFGKFSPFT------------- 284 (405)
T ss_pred cccccccccccccCCCCCEEEEEEeccccCCccHHHHHHHHHhC-------CCCeEEEEEcCCCccc-------------
Confidence 221 11 11112355789999994 3689999999999986 2579999999763211
Q ss_pred hcCCCCcEEEccCC-CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 331 ELKVDGNVEFYKNL-LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 331 ~~~l~~~V~~~g~v-~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.+++.++|.. +.+++.++|++||+||+||.+|+||++++||||||+|||+||.+
T Consensus 285 ----~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 285 ----AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred ----ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 1468889976 56899999999999999999999999999999999999999974
No 40
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=5.1e-29 Score=233.38 Aligned_cols=282 Identities=17% Similarity=0.143 Sum_probs=196.2
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
+|+++.+..+.| |+++.+.+++++|.++| |+|++++........ .. .. .. ....+... ...
T Consensus 1 ~il~~~~~~~~g-G~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~-~~---~~--~~------~~~~~~~~----~~~ 61 (360)
T cd04951 1 KILYVITGLGLG-GAEKQVVDLADQFVAKG--HQVAIISLTGESEVK-PP---ID--AT------IILNLNMS----KNP 61 (360)
T ss_pred CeEEEecCCCCC-CHHHHHHHHHHhcccCC--ceEEEEEEeCCCCcc-ch---hh--cc------ceEEeccc----ccc
Confidence 478888877665 99999999999999999 777777654321100 00 00 00 00011100 000
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
...+.......+.+.+.+||++|.+...+..+. +.+ ..+.+.+.+.|....
T Consensus 62 -------~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~------------------- 115 (360)
T cd04951 62 -------LSFLLALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNE------------------- 115 (360)
T ss_pred -------hhhHHHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCc-------------------
Confidence 011122233345567789999987654332222 222 235677777775220
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCC--------
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL-------- 263 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~-------- 263 (388)
. . +...++.+.....++.++++|+...+.+.+.... ..++.++|||+|...+.+...
T Consensus 116 ----~---~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~ 181 (360)
T cd04951 116 ----G---G-------RLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNA 181 (360)
T ss_pred ----h---h-------HHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHH
Confidence 0 0 0111233444455788888999999998876543 468999999999776643221
Q ss_pred -CCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 016535 264 -ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (388)
Q Consensus 264 -~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g 342 (388)
...++++.++++|++.+.||++.+++|++++.++. |+++|+++|+|+..+ ++++.+++++..++|.|+|
T Consensus 182 ~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~~------~~~~~~~~~~~~~~v~~~g 251 (360)
T cd04951 182 LGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDY----LDIKLLIAGDGPLRA------TLERLIKALGLSNRVKLLG 251 (360)
T ss_pred cCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhC----CCeEEEEEcCCCcHH------HHHHHHHhcCCCCcEEEec
Confidence 11234588999999999999999999999998775 799999999876443 7888888888888999999
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++ +++.++|+.||++++||..|++|++++|||++|+|||++|.+
T Consensus 252 ~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~ 295 (360)
T cd04951 252 LR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAG 295 (360)
T ss_pred cc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCC
Confidence 87 789999999999999999999999999999999999999853
No 41
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=1.1e-28 Score=231.45 Aligned_cols=299 Identities=16% Similarity=0.172 Sum_probs=202.8
Q ss_pred eEEEeccc-cCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHPN-TNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p~-~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+++..+ .+..||+++.+.+++++|.++| ++|++++........ . ...... ........
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~--~---~~~~~~------~~~~~~~~------ 61 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRG--HEVYVVAPSYPGAPE--E---EEVVVV------RPFRVPTF------ 61 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcC--CeEEEEeCCCCCCCc--c---cccccc------cccccccc------
Confidence 35555433 3445799999999999999999 788888765421100 0 000000 00000000
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCC
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (388)
........ +.........+.+.+||+++....+..... +.+..++|.+...|.... +.....
T Consensus 62 ~~~~~~~~---~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~---------- 126 (374)
T cd03817 62 KYPDFRLP---LPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYE--DYTHYV---------- 126 (374)
T ss_pred hhhhhhcc---ccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHH--HHHHHH----------
Confidence 00000000 011112223466789999877655332222 334678899988886431 110000
Q ss_pred ccccccchhhhhhhHHHHHHH-HHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC-------
Q 016535 192 ASIAQSNWLSQCKIVYYTFFS-WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------- 263 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~------- 263 (388)
............ ++++...+.+|.+++.|+..++.+.+. +...++.++|||+|...+.+.+.
T Consensus 127 ---------~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 196 (374)
T cd03817 127 ---------PLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGDDERRKL 196 (374)
T ss_pred ---------hcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhc-CCCCceEEcCCccchhccCccchhHHHHhc
Confidence 000001111111 467888899999999999999988765 33556899999999877654332
Q ss_pred CCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 264 ~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
....++..++++|++.+.||++.++++++.+.++. ++++++++|.++. .+.+++.++++++.++|.++|.
T Consensus 197 ~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~v~~~g~ 266 (374)
T cd03817 197 GIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEE----PDVKLVIVGDGPE------REELEELARELGLADRVIFTGF 266 (374)
T ss_pred CCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhC----CCeEEEEEeCCch------HHHHHHHHHHcCCCCcEEEecc
Confidence 11245688999999999999999999999998774 7999999997643 3478888888899899999999
Q ss_pred CCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++++++.++|+.||++++||..|++|++++|||+||+|||+++.+
T Consensus 267 ~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 267 VPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred CChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 999999999999999999999999999999999999999999864
No 42
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=2.6e-28 Score=228.70 Aligned_cols=286 Identities=16% Similarity=0.052 Sum_probs=194.2
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+|+.|+....||.++++.+++++|.+.| +++++++........ .. ... .. . ..... .
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~---~~----~~~--~~-~-~~~~~--------~ 59 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARG--PDVLVVSVAALYPSL---LY----GGE--QE-V-VRVIV--------L 59 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcC--CeEEEEEeecccCcc---cC----CCc--cc-c-eeeee--------c
Confidence 689999998867799999999999999999 667666654311100 00 000 00 0 00000 0
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc----hhh----hcCCeEEEEEeccccchhhhhhhhcCCcc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LAR----IFGCRVICYTHYPTISLDMISRVREGSSM 187 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~----~~~----~~~~~~i~~~h~p~~~~~~~~~~~~~~~~ 187 (388)
.. ........+.+.+.+||++|.+.......+ ... ..++|+++++|......
T Consensus 60 ~~--------~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------ 119 (366)
T cd03822 60 DN--------PLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHE------------ 119 (366)
T ss_pred CC--------chhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccc------------
Confidence 00 001122344567779999876653222211 111 27899999999741000
Q ss_pred ccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECC-hhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC---
Q 016535 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNS-SWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--- 263 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S-~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~--- 263 (388)
......++.+...+.+|.++++| +..++.+...+ ..++.+++||++...+.....
T Consensus 120 -------------------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 178 (366)
T cd03822 120 -------------------PRPGDRALLRLLLRRADAVIVMSSELLRALLLRAY--PEKIAVIPHGVPDPPAEPPESLKA 178 (366)
T ss_pred -------------------cchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC--CCcEEEeCCCCcCcccCCchhhHh
Confidence 00111234566678899999996 33333333222 368999999999766654311
Q ss_pred -CCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 016535 264 -ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (388)
Q Consensus 264 -~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g 342 (388)
....++.+++|+|++.+.||++.+++|++.+.+++ ++++|+++|.+.+..... .....++++++++.++|.|+|
T Consensus 179 ~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~----~~~~l~i~G~~~~~~~~~-~~~~~~~i~~~~~~~~v~~~~ 253 (366)
T cd03822 179 LGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKH----PDVRLLVAGETHPDLERY-RGEAYALAERLGLADRVIFIN 253 (366)
T ss_pred hcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhC----CCeEEEEeccCccchhhh-hhhhHhHHHhcCCCCcEEEec
Confidence 12245689999999999999999999999998875 799999999875543111 111114478889999999998
Q ss_pred C-CCHHHHHHHHHhCcEEEEcCCCC--CCChHHHHHHHhCCceEeeCCC
Q 016535 343 N-LLYRDLVKLLGGAVVGIHSMIDE--HFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 343 ~-v~~~~l~~~~~~adv~v~ps~~E--~~~~~vlEAma~G~PVI~~~~~ 388 (388)
. ++.+++.++|+.||++++||..| ++|++++|||+||+|||+++.+
T Consensus 254 ~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~ 302 (366)
T cd03822 254 RYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVG 302 (366)
T ss_pred CcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCC
Confidence 7 99999999999999999999999 9999999999999999999863
No 43
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.97 E-value=1.2e-28 Score=233.63 Aligned_cols=297 Identities=17% Similarity=0.188 Sum_probs=195.2
Q ss_pred ceEEEeccccC-C-CCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccc
Q 016535 35 TSVAFFHPNTN-D-GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (388)
Q Consensus 35 ~~I~~~~p~~~-~-gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 112 (388)
|||+++.+... . .||+++.+.+++++|.++ ++++|.++.... . . ..++.+..+.. +..
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------~-----~------~~~~~~~~~~~--~~~ 60 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------F-----D------SEGLTVKGYRP--WSE 60 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------h-----c------CCCeEEEEecC--hhh
Confidence 68888866554 2 479999999999999886 346555432211 0 0 11122222211 100
Q ss_pred cCCCCceehhhhhhhHHHHHHHHH-hhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCcccc
Q 016535 113 ESTYPRFTMIGQSFGSVYLSWEAL-CKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (388)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~ 189 (388)
+......+......+... ...++|++|.+..+..... ..+..++|.+.+.|....... +..
T Consensus 61 ------~~~~~~~~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~-----~~~----- 124 (388)
T TIGR02149 61 ------LKEANKALGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVVTAHSLEPLRP-----WKE----- 124 (388)
T ss_pred ------ccchhhhhhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEEEeeccccccc-----ccc-----
Confidence 000111111111111112 2346999987764332222 234678999999995321000 000
Q ss_pred CCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhC-C-CCceEEEcCCCCCCCCccCCCC---
Q 016535 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWG-I-PDRIKRVYPPCDTSGLQVLPLE--- 264 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~-~-~~~~~vi~ngvd~~~~~~~~~~--- 264 (388)
.... ..+....++++...+.+|.++++|+..++.+.+.++ . ..++.++|||+|.+.+.+....
T Consensus 125 -----------~~~~-~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~ 192 (388)
T TIGR02149 125 -----------EQLG-GGYKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVL 192 (388)
T ss_pred -----------cccc-cchhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHH
Confidence 0000 011234567888899999999999999999988763 2 4678999999998776542211
Q ss_pred ----CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC-CCcEE
Q 016535 265 ----RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVE 339 (388)
Q Consensus 265 ----~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l-~~~V~ 339 (388)
...+..+++|+||+.++||++.+++|++.+. ++++++++|+++.. .++.+++++.+++++. .+++.
T Consensus 193 ~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~-------~~~~l~i~g~g~~~--~~~~~~~~~~~~~~~~~~~~v~ 263 (388)
T TIGR02149 193 DRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP-------KDVQVVLCAGAPDT--PEVAEEVRQAVALLDRNRTGII 263 (388)
T ss_pred HHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh-------hcCcEEEEeCCCCc--HHHHHHHHHHHHHhccccCceE
Confidence 1134568999999999999999999999883 37889998876542 2345677777777665 23577
Q ss_pred Ec-cCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 340 FY-KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 340 ~~-g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+. |.++.+++.++|+.||++|+||..|++|++++|||+||+|||++|.+
T Consensus 264 ~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~ 313 (388)
T TIGR02149 264 WINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG 313 (388)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC
Confidence 65 68999999999999999999999999999999999999999999863
No 44
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=6.5e-29 Score=234.41 Aligned_cols=218 Identities=17% Similarity=0.083 Sum_probs=162.1
Q ss_pred HHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEE-Eec-cccchhhhhhhhcCCccccCCccccccchhhhhhh
Q 016535 130 YLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICY-THY-PTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (388)
Q Consensus 130 ~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~-~h~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (388)
.....++++.+||+||.+...+..+. .+++.+.|++++ .|. +. .. ..+
T Consensus 270 ~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~---~~-------------------------~~r 321 (578)
T PRK15490 270 KHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPP---VV-------------------------RKR 321 (578)
T ss_pred HHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCC---cc-------------------------hhh
Confidence 33445688899999998766442232 556778898654 442 11 00 000
Q ss_pred HHHHHHHHHHH--HHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCC-----------CCCCCcE
Q 016535 206 VYYTFFSWMYG--LVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-----------RSTEYPA 271 (388)
Q Consensus 206 ~~~~~~~~~~~--~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~-----------~~~~~~~ 271 (388)
....-+....+ .....+| ++++|..+++.+.+.++. ++++.+||||+|+..|.+.... ...+...
T Consensus 322 ~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~v 400 (578)
T PRK15490 322 LFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTT 400 (578)
T ss_pred HHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcE
Confidence 11111111111 2244556 788999999999877655 5789999999998766552210 0134468
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
++++||+.+.||+..+++++..+.++. |+++|+++|+|+.. ++++++++++++.++|.|+|+. +|+.+
T Consensus 401 Ig~VgRl~~~Kg~~~LI~A~a~llk~~----pdirLvIVGdG~~~------eeLk~la~elgL~d~V~FlG~~--~Dv~~ 468 (578)
T PRK15490 401 IGGVFRFVGDKNPFAWIDFAARYLQHH----PATRFVLVGDGDLR------AEAQKRAEQLGILERILFVGAS--RDVGY 468 (578)
T ss_pred EEEEEEEehhcCHHHHHHHHHHHHhHC----CCeEEEEEeCchhH------HHHHHHHHHcCCCCcEEECCCh--hhHHH
Confidence 899999999999999999999887774 89999999976543 4899999999999999999995 78999
Q ss_pred HHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 352 LLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 352 ~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+|+.+|++|+||.+|+||++++|||+||+|||+++.+
T Consensus 469 ~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG 505 (578)
T PRK15490 469 WLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG 505 (578)
T ss_pred HHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC
Confidence 9999999999999999999999999999999999864
No 45
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=1.9e-28 Score=227.11 Aligned_cols=283 Identities=18% Similarity=0.163 Sum_probs=196.8
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++.+.....||+++++.+++++|.+.| ++|++++..... .. .....++..+..+..... .
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~--~-- 63 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG--HEVTIISLDKGE--PP---------FYELDPKIKVIDLGDKRD--S-- 63 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC--CeEEEEecCCCC--CC---------ccccCCccceeecccccc--c--
Confidence 588888888745699999999999999999 788888766421 00 001112222222211100 0
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcC-CeEEEEEeccccchhhhhhhhcCCccccCCccc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFG-CRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~-~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.....+.......+.+.+.+||+++.+......+......+ +|.+.+.|.......
T Consensus 64 -----~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------ 120 (348)
T cd03820 64 -----KLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAYK------------------ 120 (348)
T ss_pred -----chhccccchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccchh------------------
Confidence 00001111223334566789999987765411111122333 488888775331000
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEE
Q 016535 195 AQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIIS 274 (388)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~ 274 (388)
........++..++.+|.+++.|+..+..... ....++.++|||++...+... ...++..+++
T Consensus 121 ------------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~---~~~~~~~i~~ 183 (348)
T cd03820 121 ------------KRLRRLLLRRLLYRRADAVVVLTEEDRALYYK--KFNKNVVVIPNPLPFPPEEPS---SDLKSKRILA 183 (348)
T ss_pred ------------hhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhc--cCCCCeEEecCCcChhhcccc---CCCCCcEEEE
Confidence 00001114677788999999999999832222 225789999999997766543 1245588999
Q ss_pred EcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHH
Q 016535 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG 354 (388)
Q Consensus 275 vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~ 354 (388)
+|++.+.||++.+++|++.+.++. ++++|+++|.+.+.+ .+.+.++++++.++|.+.|. .+++.++|+
T Consensus 184 ~g~~~~~K~~~~l~~~~~~l~~~~----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~ 251 (348)
T cd03820 184 VGRLVPQKGFDLLIEAWAKIAKKH----PDWKLRIVGDGPERE------ALEALIKELGLEDRVILLGF--TKNIEEYYA 251 (348)
T ss_pred EEeeccccCHHHHHHHHHHHHhcC----CCeEEEEEeCCCCHH------HHHHHHHHcCCCCeEEEcCC--cchHHHHHH
Confidence 999999999999999999997764 899999999775443 67778888899899999998 589999999
Q ss_pred hCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 355 GAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 355 ~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
.||++++||..|++|++++|||+||+|||+++.
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~ 284 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEAMAFGLPVISFDC 284 (348)
T ss_pred hCCEEEeCccccccCHHHHHHHHcCCCEEEecC
Confidence 999999999999999999999999999999974
No 46
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=3.2e-28 Score=227.68 Aligned_cols=298 Identities=16% Similarity=0.148 Sum_probs=204.0
Q ss_pred EEEeccccCC--CCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 37 VAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 37 I~~~~p~~~~--gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|+++.+.... .||+++.+.+++++|.+.| ++|++++........... ... .. .. .........
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g--~~v~v~~~~~~~~~~~~~--~~~---~~-~~-~~~~~~~~~------ 65 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRG--VEVTVLAPGPWGPKLLDL--LKG---RL-VG-VERLPVLLP------ 65 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCC--CceEEEecCCCCCCchhh--ccc---cc-cc-ccccccCcc------
Confidence 3455444443 4699999999999999999 778888766432111100 000 00 00 000000000
Q ss_pred CCCceehhhhhhhHHHHHHHHHh--hcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCcccc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~ 189 (388)
.....................+. ..++|+++.+........ +.+..++|.+.+.|........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------------ 133 (377)
T cd03798 66 VVPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLP------------ 133 (377)
T ss_pred hhhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccC------------
Confidence 00000001111111222233455 779998876644332222 2235567999999964421100
Q ss_pred CCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC------
Q 016535 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------ 263 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~------ 263 (388)
........++...+.+|.+++.|+..++.+.+.+....++.+++||+|...+.+...
T Consensus 134 -----------------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (377)
T cd03798 134 -----------------RKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEARKL 196 (377)
T ss_pred -----------------chhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHHHhc
Confidence 000223356777889999999999999999887433578999999999877765432
Q ss_pred CCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 264 ~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
....+...++++|++.+.||++.++++++.+.+++ ++++++++|.+.+.+ .+++.+++.+..++|.+.|+
T Consensus 197 ~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~----~~~~l~i~g~~~~~~------~~~~~~~~~~~~~~v~~~g~ 266 (377)
T cd03798 197 GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR----PDVHLVIVGDGPLRE------ALEALAAELGLEDRVTFLGA 266 (377)
T ss_pred cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcC----CCeEEEEEcCCcchH------HHHHHHHhcCCcceEEEeCC
Confidence 12245689999999999999999999999997774 789999999765443 77888888888899999999
Q ss_pred CCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++++++.++|+.||++++||..|++|.+++|||++|+|||+++.+
T Consensus 267 ~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~ 311 (377)
T cd03798 267 VPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG 311 (377)
T ss_pred CCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC
Confidence 999999999999999999999999999999999999999999853
No 47
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.97 E-value=2e-28 Score=230.71 Aligned_cols=290 Identities=17% Similarity=0.128 Sum_probs=180.1
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++.+.... ||+++++.+++++|.+.| |+|++++.... +...+...+ ...... +... .++. .
T Consensus 1 ki~~~~~~~~~-GGv~~~~~~l~~~l~~~g--~~v~~~~~~~~---~~~~~~~~~-~~~~~~-g~~~-~~~~------~- 64 (372)
T cd03792 1 KVLHVNSTPYG-GGVAEILHSLVPLMRDLG--VDTRWEVIKGD---PEFFNVTKK-FHNALQ-GADI-ELSE------E- 64 (372)
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHHcC--CCceEEecCCC---hhHHHHHHH-hhHhhc-CCCC-CCCH------H-
Confidence 57888776644 599999999999999999 55555544321 111111000 000000 0000 0000 0
Q ss_pred CCceehhhhhhhHHHHHHH-HHhhcCCcEEEecCCcccccchhh-hcCCeEEEEEeccccchhhhhhhhcCCccccCCcc
Q 016535 116 YPRFTMIGQSFGSVYLSWE-ALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~l~~~~~Div~~~~~~~~~~~~~~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
....+......... .+...+||+||.+...+...+.++ ..++|.+.++|.+....
T Consensus 65 -----~~~~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~------------------ 121 (372)
T cd03792 65 -----EKEIYLEWNEENAERPLLDLDADVVVIHDPQPLALPLFKKKRGRPWIWRCHIDLSSP------------------ 121 (372)
T ss_pred -----HHHHHHHHHHHHhccccccCCCCEEEECCCCchhHHHhhhcCCCeEEEEeeeecCCC------------------
Confidence 00000000000000 133568999987655433333333 34789888888633100
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCC-----------
Q 016535 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----------- 262 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~----------- 262 (388)
. ...++ +.+...+.+|.+++.|+ +......+ ..+. ++|||+|........
T Consensus 122 -------~---~~~~~----~~~~~~~~~d~~i~~~~---~~~~~~~~-~~~~-vipngvd~~~~~~~~~~~~~~~~~~~ 182 (372)
T cd03792 122 -------N---RRVWD----FLQPYIEDYDAAVFHLP---EYVPPQVP-PRKV-IIPPSIDPLSGKNRELSPADIEYILE 182 (372)
T ss_pred -------c---HHHHH----HHHHHHHhCCEEeecHH---HhcCCCCC-CceE-EeCCCCCCCccccCCCCHHHHHHHHH
Confidence 0 01111 23445567888888773 22222222 3344 999999964211100
Q ss_pred -CCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 016535 263 -LERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (388)
Q Consensus 263 -~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~ 341 (388)
.....++.+++++||+.+.||++.+++|++.+.++. ++++|+++|+++..+ .+..+.+++..++.+..++|.|.
T Consensus 183 ~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~----~~~~l~i~G~g~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 257 (372)
T cd03792 183 KYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERV----PDPQLVLVGSGATDD-PEGWIVYEEVLEYAEGDPDIHVL 257 (372)
T ss_pred HhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhC----CCCEEEEEeCCCCCC-chhHHHHHHHHHHhCCCCCeEEE
Confidence 011145688999999999999999999999997764 789999999986542 22223345555566777889999
Q ss_pred cCC--CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 342 KNL--LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 342 g~v--~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
|.. +++++.++|+.||++++||..|+||++++|||+||+|||+++.+
T Consensus 258 ~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~ 306 (372)
T cd03792 258 TLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVG 306 (372)
T ss_pred ecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCC
Confidence 886 89999999999999999999999999999999999999999853
No 48
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=4.2e-28 Score=226.42 Aligned_cols=288 Identities=22% Similarity=0.206 Sum_probs=200.6
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++.+....| |+++++.+++++|.+.| +++.+++.... ......... .+ +.+..+.....
T Consensus 1 ~i~~i~~~~~~g-G~~~~~~~l~~~l~~~~--~~v~~~~~~~~---~~~~~~~~~-~~------i~v~~~~~~~~----- 62 (365)
T cd03807 1 KVLHVITGLDVG-GAERMLVRLLKGLDRDR--FEHVVISLTDR---GELGEELEE-AG------VPVYCLGKRPG----- 62 (365)
T ss_pred CeEEEEeeccCc-cHHHHHHHHHHHhhhcc--ceEEEEecCcc---hhhhHHHHh-cC------CeEEEEecccc-----
Confidence 588888888775 99999999999999999 66666665431 111111111 12 22333322110
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhh-cCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARI-FGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~-~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
.. .........+.+.+.+||+++.......... ..+. .+.+.++..|.......
T Consensus 63 ~~-------~~~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------- 119 (365)
T cd03807 63 RP-------DPGALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLG---------------- 119 (365)
T ss_pred cc-------cHHHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCccccc----------------
Confidence 00 1112233445567789999976644322222 2233 57788887775331000
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC--------
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------- 264 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~-------- 264 (388)
........++.+...+.++.++++|+..++.+.+......++.+++||+|...+.+....
T Consensus 120 ------------~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 187 (365)
T cd03807 120 ------------KKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREEL 187 (365)
T ss_pred ------------chhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhc
Confidence 011122334566777889999999999999998753224688899999997665432211
Q ss_pred -CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHH-hcCCCCcEEEcc
Q 016535 265 -RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYK 342 (388)
Q Consensus 265 -~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~~V~~~g 342 (388)
...+...++++|++.+.||++.+++|+..+.++. ++++++++|.++..+ .+++..+ ++++.++|.+.|
T Consensus 188 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~g 257 (365)
T cd03807 188 GLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKF----PNARLLLVGDGPDRA------NLELLALKELGLEDKVILLG 257 (365)
T ss_pred CCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhC----CCeEEEEecCCcchh------HHHHHHHHhcCCCceEEEcc
Confidence 1134578999999999999999999999998874 799999999876543 4455554 778889999999
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.. +|+.++|+.||++++||..|++|++++|||+||+|||+++.+
T Consensus 258 ~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~ 301 (365)
T cd03807 258 ER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG 301 (365)
T ss_pred cc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC
Confidence 76 789999999999999999999999999999999999999863
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=4.9e-28 Score=225.80 Aligned_cols=297 Identities=21% Similarity=0.197 Sum_probs=209.3
Q ss_pred eEEEeccccCCC-CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p~~~~g-GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+++.+..... ||++..+.+++++|.+.| ++|++++......... . . ... ...... .
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~i~~~~~~~~~~~-----~---~--~~~-~~~~~~--------~ 59 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARG--HEVTVLTPGDGGLPDE-----E---E--VGG-IVVVRP--------P 59 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcC--ceEEEEecCCCCCCce-----e---e--ecC-cceecC--------C
Confidence 467776665433 799999999999999999 7888888764211110 0 0 000 000000 0
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
.....................+.+.++|+++.+........ ..+..++|.+.++|.........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-------------- 125 (374)
T cd03801 60 PLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGN-------------- 125 (374)
T ss_pred cccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcccc--------------
Confidence 00001111111122223334566779999877765433332 34467899999999644211000
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCC-CceEEEcCCCCCCCCccC------CCCC
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIP-DRIKRVYPPCDTSGLQVL------PLER 265 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~-~~~~vi~ngvd~~~~~~~------~~~~ 265 (388)
. ...........++...+.+|.+++.|+..++.+.+.++.. .++.++|||+|...+.+. ....
T Consensus 126 --------~--~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 195 (374)
T cd03801 126 --------E--LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGI 195 (374)
T ss_pred --------c--hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcCC
Confidence 0 1122233444677888899999999999999999887653 689999999998776431 1222
Q ss_pred CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016535 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (388)
Q Consensus 266 ~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~ 345 (388)
..+...++++|++.+.||++.+++++..+.++. ++++|+++|.+ ...+.+++.+++++..++|.+.|+++
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~----~~~~l~i~G~~------~~~~~~~~~~~~~~~~~~v~~~g~~~ 265 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEY----PDVRLVIVGDG------PLREELEALAAELGLGDRVTFLGFVP 265 (374)
T ss_pred cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhc----CCeEEEEEeCc------HHHHHHHHHHHHhCCCcceEEEeccC
Confidence 245689999999999999999999999998775 78999999944 33457888888888989999999999
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
.+++.++|+.||++++|+..|++|++++|||++|+|||+++.
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV 307 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCC
Confidence 999999999999999999999999999999999999999984
No 50
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=5.4e-28 Score=238.11 Aligned_cols=332 Identities=15% Similarity=0.150 Sum_probs=199.9
Q ss_pred ccCccceEEEeccccC----------CCCChhhHHHHHHHHH--------hhcCCCc--eEEEEecCCCCCchhHHHHhh
Q 016535 30 RRNRTTSVAFFHPNTN----------DGGGGERVLWCAVKAI--------QEESPDL--DCIVYTGDHDAFPDSLLARAV 89 (388)
Q Consensus 30 ~~~~~~~I~~~~p~~~----------~gGG~~~~~~~l~~~L--------~~~g~~~--~v~v~~~~~~~~~~~~~~~~~ 89 (388)
|=...|+|+++.+... ..||...++.+++++| .++|+++ +|+++|...+.... .++.
T Consensus 251 ~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~---~~~~ 327 (784)
T TIGR02470 251 RIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG---TTCN 327 (784)
T ss_pred hCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc---cccc
Confidence 4456789998765441 2469999999999985 6889532 67888875321100 0000
Q ss_pred hhh-ceecCCCCeeEEecccc--------cccc-CCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hh
Q 016535 90 DRF-GVELLHPPKVVHLYRRK--------WIEE-STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LA 157 (388)
Q Consensus 90 ~~~-~i~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~ 157 (388)
+.. .+...++..+++++-++ |+++ ..|++ +..+.......+..-.+.+||+||.+.+...... ++
T Consensus 328 ~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~---l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla 404 (784)
T TIGR02470 328 QRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPY---LETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLA 404 (784)
T ss_pred cccccccCCCceEEEEecCCCCcccccccccCHHHHHHH---HHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHH
Confidence 000 01111233444443222 2221 11122 1111111111111111347999998765332222 55
Q ss_pred hhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHH-HHHHHHhccCCEEEECChhHHH--
Q 016535 158 RIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS-WMYGLVGSCADLAMVNSSWTQS-- 234 (388)
Q Consensus 158 ~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~ii~~S~~~~~-- 234 (388)
+..++|.+.+.|.... .+..... ..+. .....+....+ .-+..+...||.||+.|.....
T Consensus 405 ~~lgVP~v~t~HsL~~-------~K~~~~g---------~~~~-~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~ 467 (784)
T TIGR02470 405 RKLGVTQCTIAHALEK-------TKYPDSD---------IYWQ-EFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGT 467 (784)
T ss_pred HhcCCCEEEECCcchh-------hcccccc---------cccc-cchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhh
Confidence 6789999888885321 1100000 0000 00001111100 1155778899999999964322
Q ss_pred --HHHH-----------HhC-------CCCceEEEcCCCCCCCCccCCCC----------------------------CC
Q 016535 235 --HIEK-----------LWG-------IPDRIKRVYPPCDTSGLQVLPLE----------------------------RS 266 (388)
Q Consensus 235 --~l~~-----------~~~-------~~~~~~vi~ngvd~~~~~~~~~~----------------------------~~ 266 (388)
.+.. .++ ...++.++|||+|+..|.+.... ..
T Consensus 468 ~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d 547 (784)
T TIGR02470 468 KDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKD 547 (784)
T ss_pred hhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCC
Confidence 2211 111 13588999999998866543210 01
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC---C---ccHHHHHHHHHHHHhcCCCCcEEE
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN---K---SDEERLQSLKDKSIELKVDGNVEF 340 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~---~---~~~~~~~~l~~~~~~~~l~~~V~~ 340 (388)
.+++.|+++||+.+.||++.+++|+.++.+.. ++++|+++|++.. . +..++.+++.++++++++.++|.|
T Consensus 548 ~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~----~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~f 623 (784)
T TIGR02470 548 PNKPIIFSMARLDRVKNLTGLVECYGRSPKLR----ELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRW 623 (784)
T ss_pred CCCcEEEEEeCCCccCCHHHHHHHHHHhHhhC----CCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34578999999999999999999999875432 5799999998743 1 122356788999999999999999
Q ss_pred ccCC-CHHHHHHHHH----hCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 341 YKNL-LYRDLVKLLG----GAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 341 ~g~v-~~~~l~~~~~----~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+|.+ +..+..++|. .+|+||+||++|+||++++|||+||+|||+|+.+
T Consensus 624 lG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G 676 (784)
T TIGR02470 624 IGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG 676 (784)
T ss_pred ccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC
Confidence 9975 5566666665 3479999999999999999999999999999875
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=5.9e-28 Score=225.39 Aligned_cols=287 Identities=18% Similarity=0.084 Sum_probs=189.0
Q ss_pred eEEEeccccCC--CCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecccccccc
Q 016535 36 SVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (388)
Q Consensus 36 ~I~~~~p~~~~--gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (388)
||+|+.+.... +||+++++.+++++|.++| ++|++++.......... .. .......... .+...
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~----~~-------~~~~~~~~~~-~~~~~ 66 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRG--HEVAVLTAGEDPPRQDK----EV-------IGVVVYGRPI-DEVLR 66 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcC--CceEEEeCCCCCCCccc----cc-------ccceeecccc-ccccC
Confidence 46777655543 3699999999999999999 77888876642111100 00 0000000000 00000
Q ss_pred CCCCc--eehh-hhhhhHHHHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCcc
Q 016535 114 STYPR--FTMI-GQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSM 187 (388)
Q Consensus 114 ~~~~~--~~~~-~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~ 187 (388)
..... .... ...........+.+.+.+||+++.+........ .++..++|.+.++|........
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~---------- 136 (359)
T cd03823 67 SALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPR---------- 136 (359)
T ss_pred CCchhhhhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecch----------
Confidence 00000 0000 001111222334567789999887764322222 2345678999988853210000
Q ss_pred ccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCC
Q 016535 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERST 267 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~ 267 (388)
........|.++++|+..++.+.+.+....++.+++||+|...+.+.......
T Consensus 137 ---------------------------~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~~~~~ 189 (359)
T cd03823 137 ---------------------------QGLFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRRAPPG 189 (359)
T ss_pred ---------------------------hhhhccCCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhccccccCCCC
Confidence 01111223999999999999998765445689999999998776543321234
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
++.+++++|++.+.||++.++++++.+.+ ++++|+++|.++... ...... +..++|+++|+++.+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~------~~~~l~i~G~~~~~~------~~~~~~---~~~~~v~~~g~~~~~ 254 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPR------GDIELVIVGNGLELE------EESYEL---EGDPRVEFLGAYPQE 254 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHh------cCcEEEEEcCchhhh------HHHHhh---cCCCeEEEeCCCCHH
Confidence 56889999999999999999999999865 389999999875443 222221 455799999999999
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCChHHHHHHHhCCceEeeCCC
Q 016535 348 DLVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~-~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++.++|+.||++++||. .|++|++++|||+||+|||+++.+
T Consensus 255 ~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~ 296 (359)
T cd03823 255 EIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG 296 (359)
T ss_pred HHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC
Confidence 99999999999999997 799999999999999999999863
No 52
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.5e-27 Score=223.99 Aligned_cols=222 Identities=17% Similarity=0.203 Sum_probs=159.7
Q ss_pred HhhcCCcEEEecCCccccc--c---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHH
Q 016535 136 LCKFTPLYYFDTSGYAFTY--P---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTF 210 (388)
Q Consensus 136 l~~~~~Div~~~~~~~~~~--~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
.+..+||+||.+...+... . +++..+.|.++++|.... ..... . ........+.
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~--~~~~~---~----------------~~~~~~~~~~ 154 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGY--TLLAL---S----------------LGRSHPLVRL 154 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccH--HHHhc---c----------------cCCCCHHHHH
Confidence 3457999998754322221 1 334678899988885320 11000 0 0001123456
Q ss_pred HHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCC---CCCCcEEEEEcccCCCCChHHH
Q 016535 211 FSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER---STEYPAIISVAQFRPEKAHPLQ 287 (388)
Q Consensus 211 ~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~---~~~~~~il~vgrl~~~Kg~~~l 287 (388)
+.+++++.++++|.++++|+.+++.+.+.++.+ +.++||+.+ +.|.+..... ......++++||+.+.||++.+
T Consensus 155 ~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~--i~vi~n~~~-~~f~~~~~~~~~~~~~~~~i~~~grl~~~k~~~~l 231 (371)
T PLN02275 155 YRWYERHYGKMADGHLCVTKAMQHELDQNWGIR--ATVLYDQPP-EFFRPASLEIRLRPNRPALVVSSTSWTPDEDFGIL 231 (371)
T ss_pred HHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC--eEEECCCCH-HHcCcCCchhcccCCCcEEEEEeCceeccCCHHHH
Confidence 667789999999999999999999998765543 789999853 4444322111 1234578899999999999999
Q ss_pred HHHHHHHHHHhc-------------CCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc-CCCHHHHHHHH
Q 016535 288 LEAFSVALRKLD-------------ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK-NLLYRDLVKLL 353 (388)
Q Consensus 288 l~a~~~l~~~~~-------------~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~v~~~~l~~~~ 353 (388)
++|+..+..+.. ...|+++|+++|+|+.++ ++++++++++++ ++.|.+ +++.+|++++|
T Consensus 232 i~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~------~l~~~~~~~~l~-~v~~~~~~~~~~~~~~~l 304 (371)
T PLN02275 232 LEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKA------MYEEKISRLNLR-HVAFRTMWLEAEDYPLLL 304 (371)
T ss_pred HHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCHH------HHHHHHHHcCCC-ceEEEcCCCCHHHHHHHH
Confidence 999998853210 113789999999887654 899999999997 488765 69999999999
Q ss_pred HhCcEEEEcC---CCCCCChHHHHHHHhCCceEeeCCC
Q 016535 354 GGAVVGIHSM---IDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 354 ~~adv~v~ps---~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+.||++|.|+ ..|++|++++||||||+|||+++.+
T Consensus 305 ~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g 342 (371)
T PLN02275 305 GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 342 (371)
T ss_pred HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC
Confidence 9999999763 3489999999999999999999853
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=2.9e-27 Score=220.13 Aligned_cols=290 Identities=19% Similarity=0.130 Sum_probs=197.8
Q ss_pred eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCC
Q 016535 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (388)
Q Consensus 36 ~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (388)
||+++.+. +||.++.+.+++++|.+.| ++|++++....... .....+ +.+..++.... .
T Consensus 1 kIl~i~~~---~~g~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~------~~~~~~------~~~~~~~~~~~---~- 59 (359)
T cd03808 1 KILHIVTV---DGGLYSFRLPLIKALRAAG--YEVHVVAPPGDELE------ELEALG------VKVIPIPLDRR---G- 59 (359)
T ss_pred CeeEEEec---chhHHHHHHHHHHHHHhcC--CeeEEEecCCCccc------ccccCC------ceEEecccccc---c-
Confidence 57888777 3699999999999999999 78888887642111 001111 12222211100 0
Q ss_pred CCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc-hh-h-hcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LA-R-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~-~~-~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
... ...+.......+.+.+.+||+++.....+..+. +. + ....+++...|......
T Consensus 60 ~~~----~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------- 118 (359)
T cd03808 60 INP----FKDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF----------------- 118 (359)
T ss_pred cCh----HhHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-----------------
Confidence 000 111222233344567789999876654333222 22 3 23444555555322100
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC--CCceEEEcCCCCCCCCccCCCCCCCCCc
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRIKRVYPPCDTSGLQVLPLERSTEYP 270 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~--~~~~~vi~ngvd~~~~~~~~~~~~~~~~ 270 (388)
.........+.++++...+.+|.++++|+..++.+.+.+.. ..++.+.++++|...+.........++.
T Consensus 119 ---------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (359)
T cd03808 119 ---------TSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEPIPEDDP 189 (359)
T ss_pred ---------ccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccccCCCCc
Confidence 00001234455567888889999999999999999887654 3567778889987766543321124568
Q ss_pred EEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHH-HHHhcCCCCcEEEccCCCHHHH
Q 016535 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD-KSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 271 ~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~-~~~~~~l~~~V~~~g~v~~~~l 349 (388)
.++++|++.+.||++.++++++.+.+++ ++++|+++|.+...+ .... .+++.+..++|.+.|+. +++
T Consensus 190 ~i~~~G~~~~~k~~~~li~~~~~l~~~~----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~g~~--~~~ 257 (359)
T cd03808 190 VFLFVARLLKDKGIDELLEAARILKAKG----PNVRLLLVGDGDEEN------PAAILEIEKLGLEGRVEFLGFR--DDV 257 (359)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhcC----CCeEEEEEcCCCcch------hhHHHHHHhcCCcceEEEeecc--ccH
Confidence 9999999999999999999999997764 799999999986554 2222 35666777899999994 899
Q ss_pred HHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 350 ~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.++|+.||++++||..|++|++++|||+||+|||+++.+
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~ 296 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVP 296 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCC
Confidence 999999999999999999999999999999999999863
No 54
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=8.3e-28 Score=224.95 Aligned_cols=288 Identities=19% Similarity=0.135 Sum_probs=190.3
Q ss_pred eEEEecccc-CCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHPNT-NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p~~-~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+++.+.. +..||+++.+.+++++|.++| |+|++++......... ... ...+. ......
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~----~~~--~~~~~----~~~~~~------- 61 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARG--HEVLVIAPGPFRESEG----PAR--VVPVP----SVPLPG------- 61 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCC--CEEEEEeCCchhhccC----CCC--ceeec----ccccCc-------
Confidence 466665333 333799999999999999999 8888888764210000 000 00000 000000
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCC
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (388)
....... +.......+.+.+.+||+++.......... ..+..++|.+.++|.... ....
T Consensus 62 -~~~~~~~---~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~------------ 123 (364)
T cd03814 62 -YPEIRLA---LPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFP--EYLR------------ 123 (364)
T ss_pred -ccceEec---ccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChH--HHhh------------
Confidence 0000000 111112233456779999876544322221 334678999988885321 0000
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCC------
Q 016535 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER------ 265 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~------ 265 (388)
.............+.+...+.+|.+++.|+...+.+.+.. ..++.+++||+|.+.+.+.....
T Consensus 124 ---------~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 192 (364)
T cd03814 124 ---------YYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARG--FRRVRLWPRGVDTELFHPRRRDEALRARL 192 (364)
T ss_pred ---------hcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccC--CCceeecCCCccccccCcccccHHHHHHh
Confidence 0000011122234567778889999999999999665543 35788999999987665432211
Q ss_pred -CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016535 266 -STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (388)
Q Consensus 266 -~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v 344 (388)
..++..++++|++.+.||++.++++++.+.++ ++++++++|.+++.+ .++ +..++|.+.|++
T Consensus 193 ~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-----~~~~l~i~G~~~~~~------~~~------~~~~~v~~~g~~ 255 (364)
T cd03814 193 GPPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-----PPVRLVIVGDGPARA------RLE------ARYPNVHFLGFL 255 (364)
T ss_pred CCCCCeEEEEEeccccccCHHHHHHHHHHhhhc-----CCceEEEEeCCchHH------HHh------ccCCcEEEEecc
Confidence 12357899999999999999999999999765 589999999875332 333 345789999999
Q ss_pred CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 345 ~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+.+++.++|++||++++||..|++|++++|||+||+|||+++.+
T Consensus 256 ~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~ 299 (364)
T cd03814 256 DGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG 299 (364)
T ss_pred CHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999863
No 55
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=6.5e-28 Score=233.48 Aligned_cols=227 Identities=16% Similarity=0.121 Sum_probs=173.5
Q ss_pred CCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHH
Q 016535 140 TPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (388)
Q Consensus 140 ~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
++|++|.++.....+. +++..++|.+++.|.-... +....+.. ..+.....+..+.+.+..+++
T Consensus 173 ~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~-e~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~ 239 (475)
T cd03813 173 KADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTR-ERKIELLQ------------ADWEMSYFRRLWIRFFESLGR 239 (475)
T ss_pred CCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHH-HHHHHHHh------------cccchHHHHHHHHHHHHHHHH
Confidence 6799987654222222 3457899999999963210 00000000 000112333444556677788
Q ss_pred HHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC-CCCCCcEEEEEcccCCCCChHHHHHHHHHHH
Q 016535 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-RSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (388)
Q Consensus 217 ~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~-~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~ 295 (388)
.+++.+|.+++.|+..++...+....++++.+||||+|.+.+.+.... ...+.+.++++||+.+.||++.+++|++.++
T Consensus 240 ~~~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 319 (475)
T cd03813 240 LAYQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRARPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVR 319 (475)
T ss_pred HHHHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCccccccCCCCcEEEEEeccccccCHHHHHHHHHHHH
Confidence 999999999999999998876653335789999999998877654321 2245689999999999999999999999998
Q ss_pred HHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHH
Q 016535 296 RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEY 375 (388)
Q Consensus 296 ~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEA 375 (388)
++. |+++++++|++++ +.++.++++++++++++.++|+|+| .+++.++|+.+|++|+||..|++|++++||
T Consensus 320 ~~~----p~~~l~IvG~g~~--~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEA 390 (475)
T cd03813 320 KKI----PDAEGWVIGPTDE--DPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEA 390 (475)
T ss_pred HhC----CCeEEEEECCCCc--ChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHH
Confidence 875 8999999998752 4577889999999999999999999 378999999999999999999999999999
Q ss_pred HHhCCceEeeCCC
Q 016535 376 MAAGAIPIGKHFK 388 (388)
Q Consensus 376 ma~G~PVI~~~~~ 388 (388)
|+||+|||+||.+
T Consensus 391 ma~G~PVVatd~g 403 (475)
T cd03813 391 MAAGIPVVATDVG 403 (475)
T ss_pred HHcCCCEEECCCC
Confidence 9999999999864
No 56
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=5.4e-27 Score=220.69 Aligned_cols=309 Identities=12% Similarity=0.018 Sum_probs=183.1
Q ss_pred CccceEEEec-cccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhH-HH------Hh-hhhhceecCCCCee
Q 016535 32 NRTTSVAFFH-PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL-LA------RA-VDRFGVELLHPPKV 102 (388)
Q Consensus 32 ~~~~~I~~~~-p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~-~~------~~-~~~~~i~~~~~~~~ 102 (388)
+++|+|+++. -+++.-+|.......++.+|.++|+ |+|+++.+......... .. .. .+.-.++-..+..+
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~-heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v 80 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGD-REVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERI 80 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCC-cEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeE
Confidence 4579999985 3334447999999999999999993 47888877542100000 00 00 00000000000111
Q ss_pred EEeccccccccCCCCc-eehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccch--hh-h--cCCeEEEEEeccccchh
Q 016535 103 VHLYRRKWIEESTYPR-FTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPL--AR-I--FGCRVICYTHYPTISLD 176 (388)
Q Consensus 103 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~--~~-~--~~~~~i~~~h~p~~~~~ 176 (388)
++++..++ ..++. +..-...+.......+.+.+.+||+||..+.+.... . +. . +..+++...|... ...
T Consensus 81 ~r~~s~~~---p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~-~~~g~~~~~k~~~vV~tyHT~y-~~Y 155 (462)
T PLN02846 81 SFLPKFSI---KFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTW-YHHGKRWKTKFRLVIGIVHTNY-LEY 155 (462)
T ss_pred EEeccccc---ccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhh-HHHHHHHHhcCCcEEEEECCCh-HHH
Confidence 22211111 00111 100001111112233456778999998776533322 2 22 1 1133565677522 000
Q ss_pred hhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCC
Q 016535 177 MISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS 256 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~ 256 (388)
. . .|. .+.......+....+.++. ++|.+++.|+.+.+ +.+ ......+|+|.+
T Consensus 156 ~-~-------~~~----------~g~~~~~l~~~~~~~~~r~--~~d~vi~pS~~~~~-l~~------~~i~~v~GVd~~ 208 (462)
T PLN02846 156 V-K-------REK----------NGRVKAFLLKYINSWVVDI--YCHKVIRLSAATQD-YPR------SIICNVHGVNPK 208 (462)
T ss_pred H-H-------Hhc----------cchHHHHHHHHHHHHHHHH--hcCEEEccCHHHHH-Hhh------CEEecCceechh
Confidence 0 0 000 0011112222222222221 37899999986655 432 233446899988
Q ss_pred CCccCCCCC-----CCC--CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHH
Q 016535 257 GLQVLPLER-----STE--YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS 329 (388)
Q Consensus 257 ~~~~~~~~~-----~~~--~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~ 329 (388)
.|.+..... ..+ ...++|+||+.++||++.+|+|++.+.++. ++++|+|+|+|++++ +|++++
T Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~----~~~~l~ivGdGp~~~------~L~~~a 278 (462)
T PLN02846 209 FLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKEL----SGLEVDLYGSGEDSD------EVKAAA 278 (462)
T ss_pred hcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhC----CCeEEEEECCCccHH------HHHHHH
Confidence 776542211 122 235899999999999999999999998764 789999999887666 899999
Q ss_pred HhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 330 IELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 330 ~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+++++..++ |.|..+. .++|+.+|+||+||..|+||++++||||||+|||++|.
T Consensus 279 ~~l~l~~~v-f~G~~~~---~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~ 332 (462)
T PLN02846 279 EKLELDVRV-YPGRDHA---DPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 332 (462)
T ss_pred HhcCCcEEE-ECCCCCH---HHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecC
Confidence 999886444 7887543 36999999999999999999999999999999999985
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.96 E-value=7.4e-27 Score=219.99 Aligned_cols=313 Identities=17% Similarity=0.135 Sum_probs=201.9
Q ss_pred eEEEeccccC-CCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 36 SVAFFHPNTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 36 ~I~~~~p~~~-~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
||+++.+... ..||+++.+.+++++|.++| ++|++++............. .......+..+..+.......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-- 72 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRG--HEVTVITGSPNYPSGKIYKG----YKREEVDGVRVHRVPLPPYKK-- 72 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCC--ceEEEEecCCCccccccccc----ceEEecCCeEEEEEecCCCCc--
Confidence 4677766543 33699999999999999999 78888876542111100000 001122233333332211100
Q ss_pred CCCceehhhhhhhHHHHHHHHH--hhcCCcEEEecCCcccc-cc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEAL--CKFTPLYYFDTSGYAFT-YP---LARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~Div~~~~~~~~~-~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~ 188 (388)
...+..+...+.........+ ...+||+|+........ .+ +.+..++|.+.++|...........
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~-------- 143 (394)
T cd03794 73 -NGLLKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALG-------- 143 (394)
T ss_pred -cchHHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHcc--------
Confidence 001011111122222222223 36789998777522222 12 2234578999988853211100000
Q ss_pred cCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC-----
Q 016535 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL----- 263 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~----- 263 (388)
.........+...++++..++.+|.+++.|+..++.+........++.++|||+|...+.+...
T Consensus 144 -----------~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (394)
T cd03794 144 -----------LLKNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLR 212 (394)
T ss_pred -----------CccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhh
Confidence 0000011124445568888999999999999999999733222578999999998765544321
Q ss_pred --CCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 016535 264 --ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (388)
Q Consensus 264 --~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~ 341 (388)
....++..++++|++.+.||++.+++|+..+.+. ++++++++|.++..+ .+.+.+...+. ++|.++
T Consensus 213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-----~~~~l~i~G~~~~~~------~~~~~~~~~~~-~~v~~~ 280 (394)
T cd03794 213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-----PDIRFLIVGDGPEKE------ELKELAKALGL-DNVTFL 280 (394)
T ss_pred hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-----CCeEEEEeCCcccHH------HHHHHHHHcCC-CcEEEe
Confidence 1224568899999999999999999999999665 589999999765433 66666666655 589999
Q ss_pred cCCCHHHHHHHHHhCcEEEEcCCCCCC-----ChHHHHHHHhCCceEeeCCC
Q 016535 342 KNLLYRDLVKLLGGAVVGIHSMIDEHF-----GISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 342 g~v~~~~l~~~~~~adv~v~ps~~E~~-----~~~vlEAma~G~PVI~~~~~ 388 (388)
|.++++++.++|+.||++++||..|++ |.+++|||++|+|||+++.+
T Consensus 281 g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 281 GRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred CCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 999999999999999999999998865 78899999999999999853
No 58
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=1.8e-26 Score=219.11 Aligned_cols=224 Identities=12% Similarity=-0.040 Sum_probs=153.8
Q ss_pred HHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHH
Q 016535 134 EALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSW 213 (388)
Q Consensus 134 ~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (388)
+++.+.++|+||..+.....+......++|.++..|... .+........ .............+.+.+
T Consensus 98 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~p~i~~~~d~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 164 (397)
T TIGR03087 98 ALLAAEPVDAIVVFSSAMAQYVTPHVRGVPRIVDFVDVD--SDKWLQYART-----------KRWPLRWIYRREGRLLLA 164 (397)
T ss_pred HHHhhCCCCEEEEeccccceeccccccCCCeEeehhhHH--HHHHHHHHhc-----------cCcchhHHHHHHHHHHHH
Confidence 446667899987765422111111345788888777321 1111100000 000001111111234456
Q ss_pred HHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCC---CCCCcEEEEEcccCCCCChHHHHH
Q 016535 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLER---STEYPAIISVAQFRPEKAHPLQLE 289 (388)
Q Consensus 214 ~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~---~~~~~~il~vgrl~~~Kg~~~ll~ 289 (388)
+++..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.|.+..... ..+...++|+|++.+.||++.+++
T Consensus 165 ~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~~~~~~~~~ilf~G~l~~~k~~~~l~~ 244 (397)
T TIGR03087 165 YERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPNPYPPGKRVLVFTGAMDYWPNIDAVVW 244 (397)
T ss_pred HHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccCCCCCCCcEEEEEEecCCccCHHHHHH
Confidence 78999999999999999999999876543 46889999999988776532211 123478999999999999999884
Q ss_pred ----HHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC-
Q 016535 290 ----AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI- 364 (388)
Q Consensus 290 ----a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~- 364 (388)
++..++++. |+++|+++|+++.. +++++ +..++|+|+|+++ |+..+|+.||++|+||.
T Consensus 245 ~~~~~~~~l~~~~----p~~~l~ivG~g~~~-------~~~~l----~~~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~ 307 (397)
T TIGR03087 245 FAERVFPAVRARR----PAAEFYIVGAKPSP-------AVRAL----AALPGVTVTGSVA--DVRPYLAHAAVAVAPLRI 307 (397)
T ss_pred HHHHHHHHHHHHC----CCcEEEEECCCChH-------HHHHh----ccCCCeEEeeecC--CHHHHHHhCCEEEecccc
Confidence 555565554 89999999987421 23332 3346899999995 78999999999999996
Q ss_pred CCCCChHHHHHHHhCCceEeeCC
Q 016535 365 DEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 365 ~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
.||+|++++|||+||+|||+|+.
T Consensus 308 ~eG~~~~~lEAma~G~PVV~t~~ 330 (397)
T TIGR03087 308 ARGIQNKVLEAMAMAKPVVASPE 330 (397)
T ss_pred cCCcccHHHHHHHcCCCEEecCc
Confidence 69999999999999999999974
No 59
>PLN00142 sucrose synthase
Probab=99.95 E-value=9.1e-27 Score=229.54 Aligned_cols=229 Identities=16% Similarity=0.126 Sum_probs=155.9
Q ss_pred cCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHH-HHHH
Q 016535 139 FTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF-SWMY 215 (388)
Q Consensus 139 ~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 215 (388)
.+||+||.+.+...... +++..++|.+.+.|... +.+....... |.. ....|.... ...+
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~-------k~K~~~~~~~---------~~~-~e~~y~~~~r~~aE 469 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALE-------KTKYPDSDIY---------WKK-FDDKYHFSCQFTAD 469 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccch-------hhhccccCCc---------ccc-cchhhhhhhchHHH
Confidence 46999998855332222 55688999999999532 1111100000 000 000111110 1136
Q ss_pred HHHhccCCEEEECChhHHHHHH-------HHh------------CC---CCceEEEcCCCCCCCCccCCCC---------
Q 016535 216 GLVGSCADLAMVNSSWTQSHIE-------KLW------------GI---PDRIKRVYPPCDTSGLQVLPLE--------- 264 (388)
Q Consensus 216 ~~~~~~a~~ii~~S~~~~~~l~-------~~~------------~~---~~~~~vi~ngvd~~~~~~~~~~--------- 264 (388)
..+...||.||+.|......+. ... +. ..++.++++|+|...|.+....
T Consensus 470 ~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n 549 (815)
T PLN00142 470 LIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHP 549 (815)
T ss_pred HHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcc
Confidence 7788899999998866653221 110 11 3478899999998766532100
Q ss_pred -------------------CCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC-C-----ccH
Q 016535 265 -------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN-K-----SDE 319 (388)
Q Consensus 265 -------------------~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~-~-----~~~ 319 (388)
...++.+|+++||+.+.||++.+++|++++.+.. ++++|+++|++.+ . +..
T Consensus 550 ~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~----~~~~LVIVGgg~d~~~s~d~ee~ 625 (815)
T PLN00142 550 SIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLR----ELVNLVVVGGFIDPSKSKDREEI 625 (815)
T ss_pred cchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhC----CCcEEEEEECCccccccccHHHH
Confidence 0134568999999999999999999999886653 6899999998721 1 112
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCC----CHHHHHHHHHh-CcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 320 ERLQSLKDKSIELKVDGNVEFYKNL----LYRDLVKLLGG-AVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~V~~~g~v----~~~~l~~~~~~-adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+..+++.++++++++.++|.|+|.. +.+++..+++. +|+||+||.+|+||++++||||||+|||+|+.+
T Consensus 626 ~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvG 699 (815)
T PLN00142 626 AEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQG 699 (815)
T ss_pred HHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCC
Confidence 2346788899999999999999854 34678777774 799999999999999999999999999999864
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.95 E-value=3.3e-26 Score=214.69 Aligned_cols=279 Identities=12% Similarity=-0.001 Sum_probs=182.8
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|||+++.+....| |+++.+.+++++|.++| |+|++++.... . +
T Consensus 1 MkIl~~~~~~~~g-G~~~~~~~l~~~l~~~G--~~v~v~~~~~~----~------------~------------------ 43 (365)
T cd03825 1 MKVLHLNTSDISG-GAARAAYRLHRALQAAG--VDSTMLVQEKK----A------------L------------------ 43 (365)
T ss_pred CeEEEEecCCCCC-cHHHHHHHHHHHHHhcC--CceeEEEeecc----h------------h------------------
Confidence 7899998776555 99999999999999999 77777775531 0 0
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhh-h-cCCeEEEEEeccccchhhhhhhhcCCc---c
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LAR-I-FGCRVICYTHYPTISLDMISRVREGSS---M 187 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~-~-~~~~~i~~~h~p~~~~~~~~~~~~~~~---~ 187 (388)
.+.+...++|+||.+......+. ... . .++|.++++|................. .
T Consensus 44 ------------------~~~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~ 105 (365)
T cd03825 44 ------------------ISKIEIINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTE 105 (365)
T ss_pred ------------------hhChhcccCCEEEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCcccccccccc
Confidence 00123458998875542222222 222 2 388999998853321100000000000 0
Q ss_pred ccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCC--
Q 016535 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-- 264 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~-- 264 (388)
+......... .. . ......+.+........++.++++|++.++.+.+.++. ..++.++|||+|.+.+.+....
T Consensus 106 ~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~ 181 (365)
T cd03825 106 CGNCPQLGSY--PE-K-DLSRWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREA 181 (365)
T ss_pred CCCCCCCCCC--Cc-c-cHHHHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHHH
Confidence 0000000000 00 0 01112222223333367889999999999999876533 4689999999998776432211
Q ss_pred -----CCCCCcEEEEEcccCC--CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCc
Q 016535 265 -----RSTEYPAIISVAQFRP--EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN 337 (388)
Q Consensus 265 -----~~~~~~~il~vgrl~~--~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~ 337 (388)
...+...+++.|+... .||++.+++|++.+.++. .++++++++|.++... .. +..++
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~---~~~~~~~i~G~~~~~~------~~-------~~~~~ 245 (365)
T cd03825 182 RKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERW---KDDIELVVFGASDPEI------PP-------DLPFP 245 (365)
T ss_pred HHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhcc---CCCeEEEEeCCCchhh------hc-------cCCCc
Confidence 1133456667777655 899999999999997751 2689999999864322 11 34578
Q ss_pred EEEccCCC-HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 338 VEFYKNLL-YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 338 V~~~g~v~-~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
|.++|+++ .+++.++|+.||++++||..|+||++++|||+||+|||+++.+
T Consensus 246 v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~ 297 (365)
T cd03825 246 VHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVG 297 (365)
T ss_pred eEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCC
Confidence 99999999 8899999999999999999999999999999999999999863
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.95 E-value=8.3e-26 Score=217.76 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=130.5
Q ss_pred hccCCEEEECChhHHHHHHHHhCC----CCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGI----PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVA 294 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~----~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l 294 (388)
.+.+|.+++.|+..++.+.+.++. ..++.++|||++...+.+. ...++..++++||+.++||++.+++|++.+
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~---~~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE---QERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc---cccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 467899999999999988776542 4678999999875544321 123447899999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHH
Q 016535 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVE 374 (388)
Q Consensus 295 ~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlE 374 (388)
.++. |+++|.++|.|+.. +.++++++++++.++|.|.|+. ++.++|+.||++|+||..|+||++++|
T Consensus 345 ~~~~----p~~~l~i~G~G~~~------~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lE 411 (500)
T TIGR02918 345 KKSV----PELTFDIYGEGGEK------QKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLME 411 (500)
T ss_pred HhhC----CCeEEEEEECchhH------HHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHH
Confidence 8875 89999999976533 4899999999999999999975 678899999999999999999999999
Q ss_pred HHHhCCceEeeCC
Q 016535 375 YMAAGAIPIGKHF 387 (388)
Q Consensus 375 Ama~G~PVI~~~~ 387 (388)
|||||+|||++|.
T Consensus 412 Ama~G~PVI~~dv 424 (500)
T TIGR02918 412 AVGSGLGMIGFDV 424 (500)
T ss_pred HHHhCCCEEEecC
Confidence 9999999999985
No 62
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.94 E-value=4.4e-25 Score=209.73 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=138.2
Q ss_pred HHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHH
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~ 293 (388)
.+..++.+|.++++|+..++.+.+.++. ..++.+++||++...+.+. ....+...++++|++.+.||++.+++|+..
T Consensus 177 ~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~--~~~~~~~~il~~Grl~~~Kg~~~li~a~~~ 254 (407)
T cd04946 177 RRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISK--PSKDDTLRIVSCSYLVPVKRVDLIIKALAA 254 (407)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCC--CCCCCCEEEEEeeccccccCHHHHHHHHHH
Confidence 4555788999999999999999988775 4678899999987655432 122456889999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh--CcEEEEcCCCCCCChH
Q 016535 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGIS 371 (388)
Q Consensus 294 l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~E~~~~~ 371 (388)
++++.+. .++.++++|+|+.. +.+++++++++..++|.|+|+++++++.++|+. +|++++||..||+|++
T Consensus 255 l~~~~p~--~~l~~~iiG~g~~~------~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~ 326 (407)
T cd04946 255 LAKARPS--IKIKWTHIGGGPLE------DTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVS 326 (407)
T ss_pred HHHhCCC--ceEEEEEEeCchHH------HHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHH
Confidence 9887521 25777889976433 478888888888889999999999999999986 7899999999999999
Q ss_pred HHHHHHhCCceEeeCCC
Q 016535 372 VVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 372 vlEAma~G~PVI~~~~~ 388 (388)
++|||+||+|||+||.+
T Consensus 327 llEAma~G~PVIas~vg 343 (407)
T cd04946 327 IMEAMSFGIPVIATNVG 343 (407)
T ss_pred HHHHHHcCCCEEeCCCC
Confidence 99999999999999864
No 63
>PHA01630 putative group 1 glycosyl transferase
Probab=99.93 E-value=2.3e-24 Score=197.73 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=123.4
Q ss_pred HHHHH-hccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHH
Q 016535 214 MYGLV-GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAF 291 (388)
Q Consensus 214 ~~~~~-~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~ 291 (388)
++.+. .+.+|.++++|+.+++.+.+.+.. +.++.+||||+|.+.|.+.... ...+..++++|++.++||++.+++|+
T Consensus 86 ~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~-~~~~~vl~~~g~~~~~Kg~d~Li~A~ 164 (331)
T PHA01630 86 ALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKE-KPHPCVLAILPHSWDRKGGDIVVKIF 164 (331)
T ss_pred HHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCccc-cCCCEEEEEeccccccCCHHHHHHHH
Confidence 35555 678999999999999999776322 4589999999998877653322 23446677888999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChH
Q 016535 292 SVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGIS 371 (388)
Q Consensus 292 ~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~ 371 (388)
+.+.++. ++++++++|++.... ++. ++. .+.|.++.+++.++|+.||++++||..|+||++
T Consensus 165 ~~l~~~~----~~~~llivG~~~~~~------~l~------~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~ 225 (331)
T PHA01630 165 HELQNEG----YDFYFLIKSSNMLDP------RLF------GLN---GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIP 225 (331)
T ss_pred HHHHhhC----CCEEEEEEeCcccch------hhc------ccc---ceeccCCHHHHHHHHHhCCEEEECCccccCChH
Confidence 9998774 799999999643211 111 222 135678999999999999999999999999999
Q ss_pred HHHHHHhCCceEeeCCC
Q 016535 372 VVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 372 vlEAma~G~PVI~~~~~ 388 (388)
++||||||+|||+||.+
T Consensus 226 ~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 226 VIEALALGLDVVVTEKG 242 (331)
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 99999999999999864
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=9.1e-25 Score=208.66 Aligned_cols=212 Identities=10% Similarity=0.018 Sum_probs=147.6
Q ss_pred HHHHhhcCCcEEEecCCcccccc-----hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHH
Q 016535 133 WEALCKFTPLYYFDTSGYAFTYP-----LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVY 207 (388)
Q Consensus 133 ~~~l~~~~~Div~~~~~~~~~~~-----~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (388)
.+.+...+||++|.......... .++..+ |++..+|..... +... | ..+.+....
T Consensus 427 ~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~e-Yl~~--------y----------~~g~L~~~l 486 (794)
T PLN02501 427 SQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLE-YIKR--------E----------KNGALQAFF 486 (794)
T ss_pred HHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcHH-HHhH--------h----------cchhHHHHH
Confidence 34567789999976654222211 233455 788888864311 1100 0 012233333
Q ss_pred HHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCC-------CCCcEEEEEcccCC
Q 016535 208 YTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERS-------TEYPAIISVAQFRP 280 (388)
Q Consensus 208 ~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~-------~~~~~il~vgrl~~ 280 (388)
++..+++...+. +|.+++.|+.++ .+ + . ......||||++.|.+...... .....++|+||+.+
T Consensus 487 lk~l~~~v~r~h--cD~VIaPS~atq-~L----~-~-~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~ 557 (794)
T PLN02501 487 VKHINNWVTRAY--CHKVLRLSAATQ-DL----P-K-SVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVW 557 (794)
T ss_pred HHHHHHHHHHhh--CCEEEcCCHHHH-Hh----c-c-cceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccc
Confidence 333323333322 899999997776 33 1 1 2222237999998876432110 11245899999999
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 360 (388)
+||++.+++|++.+.++. ++++|+|+|+|+.++ +++++++++++. |.|+|.. ++..++|+.+|+||
T Consensus 558 EKGld~LLeAla~L~~~~----pnvrLvIVGDGP~re------eLe~la~eLgL~--V~FLG~~--dd~~~lyasaDVFV 623 (794)
T PLN02501 558 AKGYRELIDLLAKHKNEL----DGFNLDVFGNGEDAH------EVQRAAKRLDLN--LNFLKGR--DHADDSLHGYKVFI 623 (794)
T ss_pred cCCHHHHHHHHHHHHhhC----CCeEEEEEcCCccHH------HHHHHHHHcCCE--EEecCCC--CCHHHHHHhCCEEE
Confidence 999999999999997764 789999999887654 888889988874 9999997 55668999999999
Q ss_pred EcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 361 HSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 361 ~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+||..|+||++++||||||+|||++|.
T Consensus 624 lPS~sEgFGlVlLEAMA~GlPVVATd~ 650 (794)
T PLN02501 624 NPSISDVLCTATAEALAMGKFVVCADH 650 (794)
T ss_pred ECCCcccchHHHHHHHHcCCCEEEecC
Confidence 999999999999999999999999985
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.92 E-value=4.3e-24 Score=201.26 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=134.7
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHh
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~ 298 (388)
.+.+|.+++.|+..++.+.+.++...++.++|||++...+.+... ....+..++++||+.++||++.+++|+..+.++.
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~~-~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~ 233 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQF-KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQV 233 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhcccch-hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhC
Confidence 467899999999999999988776556889999999776654321 1234578999999999999999999999998885
Q ss_pred cCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHh
Q 016535 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAA 378 (388)
Q Consensus 299 ~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~ 378 (388)
|+++|+++|.++... .+.+.+++++++++|.|.|+. +++.++|+.||++|+||..|+||++++|||++
T Consensus 234 ----~~~~l~i~G~g~~~~------~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~ 301 (372)
T cd04949 234 ----PDATLDIYGYGDEEE------KLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSH 301 (372)
T ss_pred ----CCcEEEEEEeCchHH------HHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHhC
Confidence 899999999875433 677788888999999999965 78999999999999999999999999999999
Q ss_pred CCceEeeCC
Q 016535 379 GAIPIGKHF 387 (388)
Q Consensus 379 G~PVI~~~~ 387 (388)
|+|||++|.
T Consensus 302 G~PvI~~~~ 310 (372)
T cd04949 302 GLPVISYDV 310 (372)
T ss_pred CCCEEEecC
Confidence 999999975
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=99.90 E-value=1.1e-22 Score=184.56 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred ccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC---------C-CCCCCcEEEEEcccCCCCChHHHHH
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL---------E-RSTEYPAIISVAQFRPEKAHPLQLE 289 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~---------~-~~~~~~~il~vgrl~~~Kg~~~ll~ 289 (388)
.+.+.++++|+.+++.+++. +.+..+ ++++|+|++.|.+... . ...+...++++||+.++||++.+++
T Consensus 91 ~~~~~vIavS~~t~~~L~~~-G~~~~i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~ 168 (335)
T PHA01633 91 LQDVKFIPNSKFSAENLQEV-GLQVDL-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQ 168 (335)
T ss_pred hcCCEEEeCCHHHHHHHHHh-CCCCce-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHH
Confidence 34568999999999999875 433344 5789999887765321 0 0134578999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCCHHHHHHHHHhCcEEEEcCCCC
Q 016535 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGAVVGIHSMIDE 366 (388)
Q Consensus 290 a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~---g~v~~~~l~~~~~~adv~v~ps~~E 366 (388)
|++.+.++.+...++++++++|. . . .++++++++|+|. |.++.+++.++|+.||++|+||..|
T Consensus 169 A~~~L~~~~p~~~~~i~l~ivG~------~----~----~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~E 234 (335)
T PHA01633 169 VFNELNTKYPDIAKKIHFFVISH------K----Q----FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTE 234 (335)
T ss_pred HHHHHHHhCCCccccEEEEEEcH------H----H----HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccc
Confidence 99999887522112468888872 1 1 2345677899998 5668899999999999999999999
Q ss_pred CCChHHHHHHHhCCceEeeCC
Q 016535 367 HFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 367 ~~~~~vlEAma~G~PVI~~~~ 387 (388)
+||++++|||+||+|||++|.
T Consensus 235 gfGlvlLEAMA~G~PVVas~~ 255 (335)
T PHA01633 235 GFGMPVLESMAMGTPVIHQLM 255 (335)
T ss_pred cCCHHHHHHHHcCCCEEEccC
Confidence 999999999999999999975
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.90 E-value=6.7e-21 Score=182.60 Aligned_cols=269 Identities=16% Similarity=0.082 Sum_probs=167.8
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhh
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
.|-.+.+..++++|.++++++.+.+.+.+. +......+. + .+...+.+++.. .
T Consensus 60 ~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~--~~~~~~~~~---~----~~~~~~~~~P~d-------~----------- 112 (425)
T PRK05749 60 VGETRAAIPLIRALRKRYPDLPILVTTMTP--TGSERAQAL---F----GDDVEHRYLPYD-------L----------- 112 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeCCCc--cHHHHHHHh---c----CCCceEEEecCC-------c-----------
Confidence 367778899999999998777766555432 112222111 1 111222222210 0
Q ss_pred HHHHHHHHHhhcCCcEEEecCC--cccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhh
Q 016535 128 SVYLSWEALCKFTPLYYFDTSG--YAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (388)
Q Consensus 128 ~~~~~~~~l~~~~~Div~~~~~--~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (388)
.....+.++..+||+++...+ |+..+..++..++|++...|... .. + .
T Consensus 113 -~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~--~~------------------------s-~-- 162 (425)
T PRK05749 113 -PGAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLANARLS--ER------------------------S-F-- 162 (425)
T ss_pred -HHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCC--hh------------------------h-H--
Confidence 012223467789998865433 22222233467788876543210 00 0 0
Q ss_pred HHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCC-CCCCCCccCCCC-------CCCCCcEEEEEcc
Q 016535 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP-CDTSGLQVLPLE-------RSTEYPAIISVAQ 277 (388)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ng-vd~~~~~~~~~~-------~~~~~~~il~vgr 277 (388)
..++.+.++.+..++.+|.+++.|+..++.+.+....++ +.+++|+ .|.......... -..+..+++++|+
T Consensus 163 ~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~~~~~vil~~~~ 241 (425)
T PRK05749 163 KRYQKFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLAPNRPVWIAAST 241 (425)
T ss_pred HHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEecccccccCCCChhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 111223456777788899999999999999987532233 7788885 332211110000 0023466788876
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC------------C
Q 016535 278 FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL------------L 345 (388)
Q Consensus 278 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v------------~ 345 (388)
. .|+.+.+++|++.+.+++ |+++|+++|.++++ .+++++.++++|+. .+.+.|.. +
T Consensus 242 ~--~~~~~~ll~A~~~l~~~~----~~~~liivG~g~~r-----~~~l~~~~~~~gl~-~~~~~~~~~~~~~~~v~l~~~ 309 (425)
T PRK05749 242 H--EGEEELVLDAHRALLKQF----PNLLLILVPRHPER-----FKEVEELLKKAGLS-YVRRSQGEPPSADTDVLLGDT 309 (425)
T ss_pred C--chHHHHHHHHHHHHHHhC----CCcEEEEcCCChhh-----HHHHHHHHHhCCCc-EEEccCCCCCCCCCcEEEEec
Confidence 4 688999999999987775 89999999986543 24788889988885 34443321 1
Q ss_pred HHHHHHHHHhCcEEEE-cCCCCCCChHHHHHHHhCCceEeeC
Q 016535 346 YRDLVKLLGGAVVGIH-SMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~-ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+|+.++|+.||+++. +|..|++|.+++|||+||+|||+++
T Consensus 310 ~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~ 351 (425)
T PRK05749 310 MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGP 351 (425)
T ss_pred HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECC
Confidence 3799999999998555 6778999999999999999999864
No 68
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=9.2e-21 Score=165.38 Aligned_cols=105 Identities=28% Similarity=0.299 Sum_probs=89.7
Q ss_pred EEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC-HHHHHHH
Q 016535 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL-YRDLVKL 352 (388)
Q Consensus 274 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~-~~~l~~~ 352 (388)
|+|++.+.||++.+++|+..+.++. ++++++++|.+.+.. ...+.+.+.+..++|.+.|.++ .+++..+
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~----~~~~~~i~G~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERG----PDLKLVIAGDGPERE------YLEELLAALLLLDRVIFLGGLDPEELLALL 178 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhC----CCeEEEEEeCCCChH------HHHHHHHhcCCcccEEEeCCCCcHHHHHHH
Confidence 9999999999999999999998775 799999999875443 4444466677788999999984 5666666
Q ss_pred HHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 353 ~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++.||++++||..|++|.+++|||++|+|+|+++.+
T Consensus 179 ~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 179 LAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred hhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 666999999999999999999999999999999863
No 69
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=1.1e-20 Score=176.59 Aligned_cols=261 Identities=17% Similarity=0.160 Sum_probs=163.0
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhh
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
||.++.+.+++++|.++| |+|++++..... . . +.... .++++..++.........+..+......+.
T Consensus 10 gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~--~--~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 10 GGHIFPALALAEELRERG--AEVLFLGTKRGL--E--A-RLVPK------AGIPLHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred hhhhhHHHHHHHHHHhCC--CEEEEEECCCcc--h--h-hcccc------cCCceEEEEecCcCCCChHHHHHHHHHHHH
Confidence 699999999999999999 888888765310 0 0 00000 122333332211100011111111111122
Q ss_pred HHHHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhh
Q 016535 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCK 204 (388)
Q Consensus 128 ~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (388)
......+.+++.+||+||.++..+ .++ .++..++|++++.|... . .
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~~~-~~~~~~~a~~~~~p~v~~~~~~~------------------------~---~--- 125 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGGYV-SGPVGLAAKLLGIPLVIHEQNAV------------------------P---G--- 125 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCc-chHHHHHHHHhCCCEEEEcCCCC------------------------c---c---
Confidence 223334457778999998776533 222 34567888876544211 0 0
Q ss_pred hHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCC----CCCCCCCcEEEEEcccCC
Q 016535 205 IVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERSTEYPAIISVAQFRP 280 (388)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~----~~~~~~~~~il~vgrl~~ 280 (388)
...++..+.+|.+++.|+..++. .+ ..++.+++||+|.+.+...+ .....++..++++|+...
T Consensus 126 --------~~~~~~~~~~~~vi~~s~~~~~~----~~-~~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 192 (350)
T cd03785 126 --------LANRLLARFADRVALSFPETAKY----FP-KDKAVVTGNPVREEILALDRERARLGLRPGKPTLLVFGGSQG 192 (350)
T ss_pred --------HHHHHHHHhhCEEEEcchhhhhc----CC-CCcEEEECCCCchHHhhhhhhHHhcCCCCCCeEEEEECCcHh
Confidence 11334455689999999988776 22 46888999999976554321 111234567778877667
Q ss_pred CCChHH-HHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcE
Q 016535 281 EKAHPL-QLEAFSVALRKLDADLPRPRL-QFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 281 ~Kg~~~-ll~a~~~l~~~~~~~~~~~~l-~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv 358 (388)
.|+.+. +++|++.+.+ +++.+ .++|.+ + .+++++.++++ .++|.+.|++ +++.++|+.||+
T Consensus 193 ~~~~~~~l~~a~~~l~~------~~~~~~~i~G~g-~------~~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~~ad~ 255 (350)
T cd03785 193 ARAINEAVPEALAELLR------KRLQVIHQTGKG-D------LEEVKKAYEEL--GVNYEVFPFI--DDMAAAYAAADL 255 (350)
T ss_pred HHHHHHHHHHHHHHhhc------cCeEEEEEcCCc-c------HHHHHHHHhcc--CCCeEEeehh--hhHHHHHHhcCE
Confidence 777765 4588888852 35554 466754 2 23677777776 4689999998 899999999999
Q ss_pred EEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 359 GIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+|.+|- +.+++|||++|+|+|+++
T Consensus 256 ~v~~sg----~~t~~Eam~~G~Pvv~~~ 279 (350)
T cd03785 256 VISRAG----ASTVAELAALGLPAILIP 279 (350)
T ss_pred EEECCC----HhHHHHHHHhCCCEEEee
Confidence 998662 688999999999999964
No 70
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.3e-20 Score=176.53 Aligned_cols=271 Identities=11% Similarity=0.070 Sum_probs=170.1
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|||+++.... ||.++...+++++|.++| |+|++++..... . ..... . .+..+..+.........
T Consensus 2 ~~i~i~~~g~---gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~--~--~~~~~-~------~g~~~~~~~~~~~~~~~ 65 (357)
T PRK00726 2 KKILLAGGGT---GGHVFPALALAEELKKRG--WEVLYLGTARGM--E--ARLVP-K------AGIEFHFIPSGGLRRKG 65 (357)
T ss_pred cEEEEEcCcc---hHhhhHHHHHHHHHHhCC--CEEEEEECCCch--h--hhccc-c------CCCcEEEEeccCcCCCC
Confidence 6788875555 699999999999999999 788888764311 0 00101 0 12223333221110001
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+.++......++.+....+.+++.+||+||++........ ..+..+.|.+++.|...
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-------------------- 125 (357)
T PRK00726 66 SLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV-------------------- 125 (357)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC--------------------
Confidence 01111112223344445556677889999998865332222 34467788886544211
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC----CCCC
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE----RSTE 268 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~----~~~~ 268 (388)
. . ...++.++.+|.+++.++... .+ ....++.+++||+|.+.+.+.... ...+
T Consensus 126 ----~---~-----------~~~r~~~~~~d~ii~~~~~~~---~~--~~~~~i~vi~n~v~~~~~~~~~~~~~~~~~~~ 182 (357)
T PRK00726 126 ----P---G-----------LANKLLARFAKKVATAFPGAF---PE--FFKPKAVVTGNPVREEILALAAPPARLAGREG 182 (357)
T ss_pred ----c---c-----------HHHHHHHHHhchheECchhhh---hc--cCCCCEEEECCCCChHhhcccchhhhccCCCC
Confidence 0 0 123445566899999887442 22 225789999999987654432111 1134
Q ss_pred CcEEEEEcccCCCCChHHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPLQL-EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll-~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
...++++|+....|++..++ +|++++.+. + ..+.++|.+.. +++.+..+ +++. |.+.|++ +
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-----~-~~~~~~G~g~~-------~~~~~~~~-~~~~--v~~~g~~--~ 244 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEA-----L-QVIHQTGKGDL-------EEVRAAYA-AGIN--AEVVPFI--D 244 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhC-----c-EEEEEcCCCcH-------HHHHHHhh-cCCc--EEEeehH--h
Confidence 57788999888888876655 888888432 3 56778897632 24555455 6664 9999998 7
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
++.++|+.||+++.+| .+.+++|||++|+|+|++.
T Consensus 245 ~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~ 279 (357)
T PRK00726 245 DMAAAYAAADLVICRA----GASTVAELAAAGLPAILVP 279 (357)
T ss_pred hHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEec
Confidence 9999999999999876 2688999999999999964
No 71
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.87 E-value=1.3e-20 Score=179.52 Aligned_cols=220 Identities=17% Similarity=0.094 Sum_probs=149.2
Q ss_pred cCC-cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 139 FTP-LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 139 ~~~-Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.++ |+|+.+.-+...+| +.+ ....++.+++|.|....+....+.-+ ..
T Consensus 125 ~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~r-----------------------~~----- 176 (456)
T TIGR02400 125 LQPGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPWR-----------------------RE----- 176 (456)
T ss_pred CCCCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCcH-----------------------HH-----
Confidence 355 57654444344445 333 34568889999988766655432110 01
Q ss_pred HHHHhccCCEEEECChhHHHHHHHH----h------------CCCCceEEEcCCCCCCCCccCCCCC------------C
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKL----W------------GIPDRIKRVYPPCDTSGLQVLPLER------------S 266 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~----~------------~~~~~~~vi~ngvd~~~~~~~~~~~------------~ 266 (388)
.-..+-.+|.|-..+..-++.+.+. . +...++.++|||+|++.|.+..... -
T Consensus 177 il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~ 256 (456)
T TIGR02400 177 LLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL 256 (456)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc
Confidence 1223356788888888877776542 1 2245688999999998775432111 0
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhc-----------CCC
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-----------KVD 335 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-----------~l~ 335 (388)
.++.+++++||+++.||++.+++|++.+.++++....++.|+++|.. .+.+.+..+++++.++++ +..
T Consensus 257 ~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p-~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~ 335 (456)
T TIGR02400 257 KGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVP-SRGDVPEYQQLRRQVEELVGRINGRFGTLDWT 335 (456)
T ss_pred CCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecC-CccCchHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 34578999999999999999999999998876322224678888642 222333334555555443 111
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc----eEeeCC
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIGKHF 387 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P----VI~~~~ 387 (388)
+.+.+.|.++.+++.++|+.||++|+||..||||++++||||||+| +|+|+.
T Consensus 336 pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~ 391 (456)
T TIGR02400 336 PIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEF 391 (456)
T ss_pred cEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCC
Confidence 2344567899999999999999999999999999999999999999 888864
No 72
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.86 E-value=9.7e-21 Score=175.83 Aligned_cols=325 Identities=20% Similarity=0.230 Sum_probs=215.0
Q ss_pred ccceEEEeccccCCCCChhhHHHHHHHHHhh---------cCCCceEEEEecCCCCCchhH-HHHhhhhhceecCCCCee
Q 016535 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQE---------ESPDLDCIVYTGDHDAFPDSL-LARAVDRFGVELLHPPKV 102 (388)
Q Consensus 33 ~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~---------~g~~~~v~v~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 102 (388)
..+++.|.||+.+.| |+++-..+-+-.+.. .| ++|.+++.+.+.-.... ......... ....+.+
T Consensus 33 ~~~~~~~~~~~~~~g-g~er~~v~~~~~l~s~~~~lg~~d~G--~qV~~l~~h~~al~~~~~~~~~~~~l~--~~~~i~v 107 (495)
T KOG0853|consen 33 PFEHVTFIHPDLGIG-GAERLVVDAAVHLLSGQDVLGLPDTG--GQVVYLTSHEDALEMPLLLRCFAETLD--GTPPILV 107 (495)
T ss_pred cchhheeeccccccC-chHHHhHHHHHHHHhcccccCCCCCC--ceEEEEehhhhhhcchHHHHHHHHHhc--CCCceEE
Confidence 566799999999888 999999888888888 99 88999998763211111 111121111 1111222
Q ss_pred EEeccccccccCC--CCceehhhhhhhHHHHHHHHHh--hcCCcEEEecCCcccccchhh-hc----CCeEEEEEecccc
Q 016535 103 VHLYRRKWIEEST--YPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYPLAR-IF----GCRVICYTHYPTI 173 (388)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~--~~~~Div~~~~~~~~~~~~~~-~~----~~~~i~~~h~p~~ 173 (388)
+ ..|+++.. +........+.+.++..+..+. ..+.|.++.... ..+.++.+ +. ...+.+|+|+|+.
T Consensus 108 v----~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~-~~~~~l~~~~~~p~~~~~i~~~~h~~~~ 182 (495)
T KOG0853|consen 108 V----GDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFV-SACVPLLKQLSGPDVIIKIYFYCHFPDS 182 (495)
T ss_pred E----EeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchH-HHHHHHHHHhcCCcccceeEEeccchHH
Confidence 2 33444433 2111112221111111111111 135676654433 23445444 44 3667889998762
Q ss_pred chhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC--CCceEEEcC
Q 016535 174 SLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRIKRVYP 251 (388)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~--~~~~~vi~n 251 (388)
++. + .....+.+++..+.+.+......++.++++|..++..++..+.. ..++.+.+.
T Consensus 183 ---lla----------------~--r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ 241 (495)
T KOG0853|consen 183 ---LLA----------------K--RLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYP 241 (495)
T ss_pred ---Hhc----------------c--ccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeec
Confidence 110 0 01234456677777888888899999999999999999876554 344888999
Q ss_pred CCCCCCCccCCC------CC--------CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcC-CCCCcEEEEEe--CC-
Q 016535 252 PCDTSGLQVLPL------ER--------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDA-DLPRPRLQFVG--SC- 313 (388)
Q Consensus 252 gvd~~~~~~~~~------~~--------~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~-~~~~~~l~ivG--~~- 313 (388)
.+|.+.+.+... .. ......+.-+.++.|.||++.+++|+..+.+.... ..++.++.++| +.
T Consensus 242 ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d 321 (495)
T KOG0853|consen 242 EIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYD 321 (495)
T ss_pred cccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCcc
Confidence 998665542110 00 12356778889999999999999999999887632 23678999999 32
Q ss_pred -CCCccHHHHHHHHHHHHhcCC-CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 314 -RNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 314 -~~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
...++.++.+++.++++++++ .+.|.|+...++.+...+++.+.+.+.....|+||++++|||+||+||+|+|+|
T Consensus 322 ~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~G 398 (495)
T KOG0853|consen 322 ERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNG 398 (495)
T ss_pred ccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCC
Confidence 344567899999999999999 477888888887777777777776666555599999999999999999999986
No 73
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.86 E-value=8.7e-21 Score=182.19 Aligned_cols=220 Identities=16% Similarity=0.102 Sum_probs=144.7
Q ss_pred CCcEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHH
Q 016535 140 TPLYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (388)
Q Consensus 140 ~~Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
..|+|+.+..+...+| +.+ ....++++++|.|....+....+.. ... +.+
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~-----------------------~~~----ll~ 183 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-----------------------REE----LLR 183 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCC-----------------------hHH----HHH
Confidence 3467755544334444 333 3357899999988765554321110 001 111
Q ss_pred HHhccCCEEEECChhHHHHHHHH-----------------hCCCCceEEEcCCCCCCCCccCCCCC------------CC
Q 016535 217 LVGSCADLAMVNSSWTQSHIEKL-----------------WGIPDRIKRVYPPCDTSGLQVLPLER------------ST 267 (388)
Q Consensus 217 ~~~~~a~~ii~~S~~~~~~l~~~-----------------~~~~~~~~vi~ngvd~~~~~~~~~~~------------~~ 267 (388)
.+-.+|.+...+....+.+.+. .+...++.++|||+|++.|.+..... ..
T Consensus 184 -~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (460)
T cd03788 184 -GLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLG 262 (460)
T ss_pred -HHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcC
Confidence 1233777777775544444331 12235688999999987775432111 13
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC---ccHHHHHHHHHHHHhcCCC------CcE
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIELKVD------GNV 338 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~---~~~~~~~~l~~~~~~~~l~------~~V 338 (388)
++..++++||+++.||++.+++|++.+.++++....+++|+++|.+... +..++.+++++++++.+.. ..|
T Consensus 263 ~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v 342 (460)
T cd03788 263 GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPV 342 (460)
T ss_pred CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 5678999999999999999999999998876221124789988764321 1223455555555543211 235
Q ss_pred E-EccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc----eEeeCC
Q 016535 339 E-FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIGKHF 387 (388)
Q Consensus 339 ~-~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P----VI~~~~ 387 (388)
. +.|.++.+++.++|+.||++|+||..|+||++++|||+||+| ||+|+.
T Consensus 343 ~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~ 396 (460)
T cd03788 343 RYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEF 396 (460)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEecc
Confidence 4 458899999999999999999999999999999999999999 888864
No 74
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.86 E-value=7.9e-20 Score=171.98 Aligned_cols=154 Identities=16% Similarity=0.056 Sum_probs=119.7
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCC-------CCCCcEEEEEcccCCCCChH
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER-------STEYPAIISVAQFRPEKAHP 285 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~-------~~~~~~il~vgrl~~~Kg~~ 285 (388)
..++..++.+|.+++.|+..++.+.+.. .++.+++||+|.+.|.+..... ..+.+.++|+|++.+.++++
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~~~---~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRRLN---PNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhhCC---CCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHH
Confidence 4588888999999999999999887653 5899999999987775432211 13568999999999988876
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
.+.++++ .. |+++|+++|.++... +..+. .-.+||+|+|.++.+++.++|+.+|++++|+..
T Consensus 222 ll~~la~----~~----p~~~~vliG~~~~~~------~~~~~----~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~ 283 (373)
T cd04950 222 LLEALAK----AR----PDWSFVLIGPVDVSI------DPSAL----LRLPNVHYLGPKPYKELPAYLAGFDVAILPFRL 283 (373)
T ss_pred HHHHHHH----HC----CCCEEEEECCCcCcc------ChhHh----ccCCCEEEeCCCCHHHHHHHHHhCCEEecCCcc
Confidence 6554433 22 799999999873222 11111 113699999999999999999999999999753
Q ss_pred -----CCCChHHHHHHHhCCceEeeCC
Q 016535 366 -----EHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 366 -----E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+++|++++||||||+|||+++.
T Consensus 284 ~~~~~~~~P~Kl~EylA~G~PVVat~~ 310 (373)
T cd04950 284 NELTRATSPLKLFEYLAAGKPVVATPL 310 (373)
T ss_pred chhhhcCCcchHHHHhccCCCEEecCc
Confidence 4689999999999999999874
No 75
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.86 E-value=4.3e-20 Score=174.45 Aligned_cols=284 Identities=12% Similarity=0.024 Sum_probs=167.5
Q ss_pred ccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh-hhc--eecCCCCeeEEecccc
Q 016535 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD-RFG--VELLHPPKVVHLYRRK 109 (388)
Q Consensus 33 ~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~-~~~--i~~~~~~~~~~~~~~~ 109 (388)
+.|||+++.-.. |||-...+..++++|.++| ++++++........+ ...+... .+. +...+. .+.+....
T Consensus 3 ~~~rili~t~~~--G~GH~~~a~al~~~l~~~g--~~~~~~~d~~~~~~~-~~~~~~~~~y~~~~~~~~~--~~~~~~~~ 75 (380)
T PRK13609 3 KNPKVLILTAHY--GNGHVQVAKTLEQTFRQKG--IKDVIVCDLFGESHP-VITEITKYLYLKSYTIGKE--LYRLFYYG 75 (380)
T ss_pred CCCeEEEEEcCC--CchHHHHHHHHHHHHHhcC--CCcEEEEEhHHhcch-HHHHHHHHHHHHHHHHhHH--HHHHHHhc
Confidence 567899997555 5578888899999999999 444444433211111 1111100 000 000000 00000000
Q ss_pred ccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCc
Q 016535 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSS 186 (388)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~ 186 (388)
......................+.+.+.+||+||++++.. .++ +.+ ..++|++..++...
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~-~~~~~~~~~~~~ip~~~~~td~~-------------- 138 (380)
T PRK13609 76 --VEKIYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPII-AVPELKKQTGISIPTYNVLTDFC-------------- 138 (380)
T ss_pred --cCcccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHH-HHHHHHHhcCCCCCeEEEeCCCC--------------
Confidence 0000000000000011123344567888999999875533 333 222 33466553222100
Q ss_pred cccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC---
Q 016535 187 MYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--- 263 (388)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~--- 263 (388)
. ..++..+.+|.+++.|+..++.+.+....++++.+++++++..+..+.+.
T Consensus 139 ----------------------~----~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~ 192 (380)
T PRK13609 139 ----------------------L----HKIWVHREVDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDII 192 (380)
T ss_pred ----------------------C----CcccccCCCCEEEECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHH
Confidence 0 02234567999999999999999875333467888877775432211110
Q ss_pred ----CC-CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcE
Q 016535 264 ----ER-STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (388)
Q Consensus 264 ----~~-~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V 338 (388)
.. .+....+++.|++...|+++.+++++... ++++++++|+. +.+..+++++.+++++ ++|
T Consensus 193 ~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~~--------~~~~~viv~G~----~~~~~~~l~~~~~~~~--~~v 258 (380)
T PRK13609 193 YNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMSV--------PDLQVVVVCGK----NEALKQSLEDLQETNP--DAL 258 (380)
T ss_pred HHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhhC--------CCcEEEEEeCC----CHHHHHHHHHHHhcCC--CcE
Confidence 00 12234666779998899999999887532 68999887643 3444567888777665 689
Q ss_pred EEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 339 EFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 339 ~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+|+|++ +++.++|+.||+++. ++.|++++|||+||+|+|+++
T Consensus 259 ~~~g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~ 300 (380)
T PRK13609 259 KVFGYV--ENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYK 300 (380)
T ss_pred EEEech--hhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECC
Confidence 999998 678999999999884 456999999999999999976
No 76
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.86 E-value=2.1e-20 Score=174.59 Aligned_cols=271 Identities=14% Similarity=0.128 Sum_probs=160.3
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|||.|+.=.. ||..+...+++++|.++| |+|++++..... . .+..+..+ ..+..++...+....
T Consensus 1 ~~i~~~~g~~---~g~~~~~~~La~~L~~~g--~eV~vv~~~~~~--~---~~~~~~~g------~~~~~i~~~~~~~~~ 64 (348)
T TIGR01133 1 KKVVLAAGGT---GGHIFPALAVAEELIKRG--VEVLWLGTKRGL--E---KRLVPKAG------IEFYFIPVGGLRRKG 64 (348)
T ss_pred CeEEEEeCcc---HHHHhHHHHHHHHHHhCC--CEEEEEeCCCcc--h---hcccccCC------CceEEEeccCcCCCC
Confidence 4677664333 466666679999999999 888888764310 0 01111112 222232221111111
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (388)
....+......+.......+.+++.+||+||.+........ .++..++|.+.+.+...
T Consensus 65 ~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-------------------- 124 (348)
T TIGR01133 65 SFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV-------------------- 124 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC--------------------
Confidence 11111111112223334445678889999988765332222 34566778764322100
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC----CCCCC
Q 016535 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL----ERSTE 268 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~----~~~~~ 268 (388)
. .+..++..+.+|.+++.|+..++.+ +..+++||+|...+.+... ...++
T Consensus 125 --------~----------~~~~~~~~~~~d~ii~~~~~~~~~~--------~~~~i~n~v~~~~~~~~~~~~~~~~~~~ 178 (348)
T TIGR01133 125 --------P----------GLTNKLLSRFAKKVLISFPGAKDHF--------EAVLVGNPVRQEIRSLPVPRERFGLREG 178 (348)
T ss_pred --------c----------cHHHHHHHHHhCeeEECchhHhhcC--------CceEEcCCcCHHHhcccchhhhcCCCCC
Confidence 0 0123455567899999999876664 2368999998654432111 11234
Q ss_pred CcEEEEEcccCCCCChHH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
..+++++|+....|++.. +++|++.+.+. ++++++++++ .+. +++++.++++++.+.+.|. . +
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~------~~~~~~~~g~-----~~~-~~l~~~~~~~~l~~~v~~~---~-~ 242 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAEK------GIQIVHQTGK-----NDL-EKVKNVYQELGIEAIVTFI---D-E 242 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhhc------CcEEEEECCc-----chH-HHHHHHHhhCCceEEecCc---c-c
Confidence 578899998777888665 55888888543 4555444432 222 4788888888775445554 2 3
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
++.++|+.||++|.+| + |.+++|||++|+|+|+++.
T Consensus 243 ~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 243 NMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPY 278 (348)
T ss_pred CHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeC
Confidence 8899999999999864 2 7899999999999999753
No 77
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.85 E-value=4e-19 Score=168.43 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=144.4
Q ss_pred hcCCcEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 138 KFTPLYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 138 ~~~~Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
..++|++|.+.+...... ..+ ...+|.|++.|.+.....+... ....|++...+- +-.-.....-.....+
T Consensus 146 ~~~~dViH~HeWm~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g---~~~~y~~l~~~~---~d~eA~~~~I~~r~~i 219 (590)
T cd03793 146 DEPAVVAHFHEWQAGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAG---NVDFYNNLDYFD---VDKEAGKRGIYHRYCI 219 (590)
T ss_pred CCCCeEEEEcchhHhHHHHHHHHhCCCCCEEEEecccccccccccC---Ccccchhhhhcc---hhhhhhcccchHHHHH
Confidence 356889887765333222 222 4578899999965432221110 001111110000 0000000111112247
Q ss_pred HHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC------------------------CCCCCCc
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------------------------ERSTEYP 270 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~------------------------~~~~~~~ 270 (388)
|+.+...||.++++|+.+++++...++.+... |+|||+|...|..... .-..++.
T Consensus 220 E~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~t 298 (590)
T cd03793 220 ERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKT 298 (590)
T ss_pred HHHHHhhCCEEEECChHHHHHHHHHhCCCCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCe
Confidence 89999999999999999999999998875444 9999999887754321 0012345
Q ss_pred EEEE-EcccCC-CCChHHHHHHHHHHHHHhcCCCCC---cEEEEEeCCCCCcc------HHHHHHHHHHH----------
Q 016535 271 AIIS-VAQFRP-EKAHPLQLEAFSVALRKLDADLPR---PRLQFVGSCRNKSD------EERLQSLKDKS---------- 329 (388)
Q Consensus 271 ~il~-vgrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~---~~l~ivG~~~~~~~------~~~~~~l~~~~---------- 329 (388)
.++| +||++. .||+|.+|+|++++....+....+ +-|+++-+....-+ ....+++++.+
T Consensus 299 li~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~ 378 (590)
T cd03793 299 LYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKR 378 (590)
T ss_pred EEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhh
Confidence 5555 799998 999999999999997754432343 23333333211000 01111111111
Q ss_pred ---------------------------------------------------------HhcCC----CCc--EEEccC-CC
Q 016535 330 ---------------------------------------------------------IELKV----DGN--VEFYKN-LL 345 (388)
Q Consensus 330 ---------------------------------------------------------~~~~l----~~~--V~~~g~-v~ 345 (388)
+++++ .|+ |.|++. ++
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~ 458 (590)
T cd03793 379 LFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLS 458 (590)
T ss_pred hhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccC
Confidence 11112 122 333321 11
Q ss_pred ------HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 346 ------YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 346 ------~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
..+..++|+.||++|+||.+|+||++++|||+||+|||+|+.
T Consensus 459 ~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 459 STNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNL 506 (590)
T ss_pred CCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccC
Confidence 345788999999999999999999999999999999999986
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4.9e-18 Score=160.37 Aligned_cols=319 Identities=15% Similarity=0.033 Sum_probs=197.5
Q ss_pred eccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh--hhceecC--------------CCCeeE
Q 016535 40 FHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD--RFGVELL--------------HPPKVV 103 (388)
Q Consensus 40 ~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~--~~~i~~~--------------~~~~~~ 103 (388)
+.|....| |-+-++..+.++|.+.| ++|.++.+.++.-.++.....+. .++...- .+++.+
T Consensus 10 ~~p~vK~G-GLaDv~~alpk~L~~~g--~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 86 (487)
T COG0297 10 IFPFVKTG-GLADVVGALPKALAKRG--VDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKDGGVDLY 86 (487)
T ss_pred ecCccccC-cHHHHHHHhHHHHHhcC--CeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeecccCCCcEE
Confidence 35666666 99999999999999999 88888888763211211111011 0110000 001112
Q ss_pred EeccccccccCCCCceehhhhhhhHHHHH---HHHHhh----cCCcEEEecCCcccccc-hhh-----hcCCeEEEEEec
Q 016535 104 HLYRRKWIEESTYPRFTMIGQSFGSVYLS---WEALCK----FTPLYYFDTSGYAFTYP-LAR-----IFGCRVICYTHY 170 (388)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~----~~~Div~~~~~~~~~~~-~~~-----~~~~~~i~~~h~ 170 (388)
.+.......+..-......-...|..... ...+.. ..|||||++..+....+ ..+ ...+|.++++|.
T Consensus 87 lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~tVfTIHN 166 (487)
T COG0297 87 LIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPTVFTIHN 166 (487)
T ss_pred EecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCeEEEEee
Confidence 22211111110000000001111111111 111211 46999998877655555 333 236889999995
Q ss_pred cccchhhhhhhhcCCccccCCccccccchhhhhhhHHH------HHHHHHHHHHhccCCEEEECChhHHHHHHH-HhCC-
Q 016535 171 PTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYY------TFFSWMYGLVGSCADLAMVNSSWTQSHIEK-LWGI- 242 (388)
Q Consensus 171 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~-~~~~- 242 (388)
-.+.- ... .. . ..+.+.-...+. -....+.+..+..||.+.++|++-++++.. .++.
T Consensus 167 l~~qG-~~~-~~----------~---~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~g 231 (487)
T COG0297 167 LAYQG-LFR-LQ----------Y---LEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEG 231 (487)
T ss_pred ceeec-ccc-hh----------h---HHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhcccccccc
Confidence 33110 000 00 0 000000000000 011245788889999999999999998872 2321
Q ss_pred --------CCceEEEcCCCCCCCCccCCC------------C-C---------------CCCCcEEEEEcccCCCCChHH
Q 016535 243 --------PDRIKRVYPPCDTSGLQVLPL------------E-R---------------STEYPAIISVAQFRPEKAHPL 286 (388)
Q Consensus 243 --------~~~~~vi~ngvd~~~~~~~~~------------~-~---------------~~~~~~il~vgrl~~~Kg~~~ 286 (388)
..++.-|-||+|.....+... . . ..+.+.+.++||+..+||+|.
T Consensus 232 l~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl 311 (487)
T COG0297 232 LEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDL 311 (487)
T ss_pred chhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhH
Confidence 456788999998654433110 0 0 035689999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCC
Q 016535 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDE 366 (388)
Q Consensus 287 ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E 366 (388)
+++++..+.++ .+++++.|.| +..+.+.+.++++++.. ++.+.-..+..-...+|+.+|++++||.+|
T Consensus 312 ~~~~i~~~l~~------~~~~vilG~g----d~~le~~~~~la~~~~~--~~~~~i~~~~~la~~i~agaD~~lmPSrfE 379 (487)
T COG0297 312 LLEAIDELLEQ------GWQLVLLGTG----DPELEEALRALASRHPG--RVLVVIGYDEPLAHLIYAGADVILMPSRFE 379 (487)
T ss_pred HHHHHHHHHHh------CceEEEEecC----cHHHHHHHHHHHHhcCc--eEEEEeeecHHHHHHHHhcCCEEEeCCcCc
Confidence 99999999887 5999999998 66777899999988754 577766666777778999999999999999
Q ss_pred CCChHHHHHHHhCCceEeeCCC
Q 016535 367 HFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 367 ~~~~~vlEAma~G~PVI~~~~~ 388 (388)
++|++-++||++|+++|+..++
T Consensus 380 PcGL~ql~amryGtvpIv~~tG 401 (487)
T COG0297 380 PCGLTQLYAMRYGTLPIVRETG 401 (487)
T ss_pred CCcHHHHHHHHcCCcceEcccC
Confidence 9999999999999999998764
No 79
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.79 E-value=6.5e-19 Score=147.40 Aligned_cols=112 Identities=27% Similarity=0.351 Sum_probs=98.7
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHH-hcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRK-LDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~-~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~ 345 (388)
.++..++++||+.+.||++.+++|+..+.++ . +++.++++|.+ ++...+...++.+++.+++.|+|.++
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~----~~~~l~i~G~~------~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKN----PNYKLVIVGDG------EYKKELKNLIEKLNLKENIIFLGYVP 82 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHH----TTEEEEEESHC------CHHHHHHHHHHHTTCGTTEEEEESHS
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcC----CCeEEEEEccc------cccccccccccccccccccccccccc
Confidence 4568999999999999999999999999874 4 79999999933 33457888899999989999999999
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
.+++.++|+.||++|+||..|+||++++|||++|+|||+++.+
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~ 125 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIG 125 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESST
T ss_pred ccccccccccceeccccccccccccccccccccccceeecccc
Confidence 9999999999999999999999999999999999999999853
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.79 E-value=3.3e-18 Score=172.96 Aligned_cols=220 Identities=15% Similarity=0.079 Sum_probs=145.6
Q ss_pred cCC-cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 139 FTP-LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 139 ~~~-Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.++ |+|..+.-+.+.+| +.+ ....++.+++|.|..+.+.+..+..+ + .+
T Consensus 145 ~~~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r-------------------~----~i---- 197 (797)
T PLN03063 145 YEEGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSR-------------------S----EL---- 197 (797)
T ss_pred cCCCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCH-------------------H----HH----
Confidence 455 57644443334445 433 45688999999999877765532211 0 11
Q ss_pred HHHHhccCCEEEECChhHHHHHHH----------------HhCCCCceEEEcCCCCCCCCccCCCC------------CC
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEK----------------LWGIPDRIKRVYPPCDTSGLQVLPLE------------RS 266 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~----------------~~~~~~~~~vi~ngvd~~~~~~~~~~------------~~ 266 (388)
-..+-.+|.|-..+....+++.+ ..+...++.++|||+|++.|.+.... .-
T Consensus 198 -l~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~ 276 (797)
T PLN03063 198 -LRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFF 276 (797)
T ss_pred -HHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhc
Confidence 11123455555555555555443 11223578899999998776532111 01
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcC--CCCc-------
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--VDGN------- 337 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~--l~~~------- 337 (388)
.++.+|+++||+++.||++.+++|++.+.++++....++.|+.++. +.+.+....+++++.++++. +..+
T Consensus 277 ~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~-psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~ 355 (797)
T PLN03063 277 AGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAV-PTRNDVPEYQKLKSQVHELVGRINGRFGSVSSV 355 (797)
T ss_pred CCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEec-CCCCchHHHHHHHHHHHHHHHHhhcccccCCCc
Confidence 3457899999999999999999999999888632122345665553 33334455556777776663 2211
Q ss_pred -EE-EccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc----eEeeCC
Q 016535 338 -VE-FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIGKHF 387 (388)
Q Consensus 338 -V~-~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P----VI~~~~ 387 (388)
|. +.+.++.+++.++|+.||++|+||..||||++++||||||+| +|.|..
T Consensus 356 pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~ 411 (797)
T PLN03063 356 PIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF 411 (797)
T ss_pred eeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCC
Confidence 33 346889999999999999999999999999999999999999 888764
No 81
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.78 E-value=1.5e-17 Score=156.91 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=112.1
Q ss_pred HHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC--------CCCCCCcEEEEEcccCCCCChHHHH
Q 016535 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--------ERSTEYPAIISVAQFRPEKAHPLQL 288 (388)
Q Consensus 217 ~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~--------~~~~~~~~il~vgrl~~~Kg~~~ll 288 (388)
+..+.+|.+++.|+..++.+.+.+-.++++.++++|++.++..+... .-.++.+.++++|+....|++..++
T Consensus 146 w~~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li 225 (382)
T PLN02605 146 WFHKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETA 225 (382)
T ss_pred cccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHH
Confidence 33467999999999999999876433578999999998654432111 1114568899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcE-EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCC
Q 016535 289 EAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEH 367 (388)
Q Consensus 289 ~a~~~l~~~~~~~~~~~~-l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~ 367 (388)
+++..+........++.+ ++++|. +.+..+++++. ...++|+|+|++ +++.++|+.||++|.++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~vi~G~-----~~~~~~~L~~~----~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~---- 290 (382)
T PLN02605 226 RALGDSLYDKNLGKPIGQVVVICGR-----NKKLQSKLESR----DWKIPVKVRGFV--TNMEEWMGACDCIITKA---- 290 (382)
T ss_pred HHHHHhhccccccCCCceEEEEECC-----CHHHHHHHHhh----cccCCeEEEecc--ccHHHHHHhCCEEEECC----
Confidence 998865311000014565 566674 22333345443 223579999999 68999999999999864
Q ss_pred CChHHHHHHHhCCceEeeCC
Q 016535 368 FGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 368 ~~~~vlEAma~G~PVI~~~~ 387 (388)
.|++++|||+||+|+|+++.
T Consensus 291 g~~ti~EAma~g~PvI~~~~ 310 (382)
T PLN02605 291 GPGTIAEALIRGLPIILNGY 310 (382)
T ss_pred CcchHHHHHHcCCCEEEecC
Confidence 48899999999999999973
No 82
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.77 E-value=3.4e-17 Score=154.86 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=107.0
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCC-------CC-CCCCcEEEEEcccCCCCChHHHHHH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-------ER-STEYPAIISVAQFRPEKAHPLQLEA 290 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~-------~~-~~~~~~il~vgrl~~~Kg~~~ll~a 290 (388)
.+.+|.+++.|+.+++.+.+.+...+++.++.+|++..+..+.+. .- .++...+++.|+++..||++.++++
T Consensus 145 ~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~ 224 (391)
T PRK13608 145 TPYSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITD 224 (391)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHH
Confidence 467899999999999999875333567888888887443322110 00 1233456789999999999999998
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCCh
Q 016535 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGI 370 (388)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~ 370 (388)
+. +.. ++++++++++. +.+..+++++.. +..++|.++|++ +++.++|+.||++|. ++.|+
T Consensus 225 ~~---~~~----~~~~~vvv~G~----~~~l~~~l~~~~---~~~~~v~~~G~~--~~~~~~~~~aDl~I~----k~gg~ 284 (391)
T PRK13608 225 IL---AKS----ANAQVVMICGK----SKELKRSLTAKF---KSNENVLILGYT--KHMNEWMASSQLMIT----KPGGI 284 (391)
T ss_pred HH---hcC----CCceEEEEcCC----CHHHHHHHHHHh---ccCCCeEEEecc--chHHHHHHhhhEEEe----CCchH
Confidence 53 221 57888777543 333334454433 334689999998 789999999999986 35689
Q ss_pred HHHHHHHhCCceEeeCC
Q 016535 371 SVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 371 ~vlEAma~G~PVI~~~~ 387 (388)
++.|||++|+|+|+++.
T Consensus 285 tl~EA~a~G~PvI~~~~ 301 (391)
T PRK13608 285 TISEGLARCIPMIFLNP 301 (391)
T ss_pred HHHHHHHhCCCEEECCC
Confidence 99999999999999863
No 83
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.74 E-value=3.2e-17 Score=166.03 Aligned_cols=220 Identities=18% Similarity=0.152 Sum_probs=140.8
Q ss_pred cCC-cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 139 FTP-LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 139 ~~~-Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.++ |+|+.+.-+.+.+| ..+ ....++.+++|.|....+....+..+. .
T Consensus 131 ~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~~-----------------------~----- 182 (726)
T PRK14501 131 ARPGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWRE-----------------------E----- 182 (726)
T ss_pred cCCCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCChH-----------------------H-----
Confidence 455 56644443334445 333 346788999999987776655322110 0
Q ss_pred HHHHhccCCEEEECChhHHHHHHH----------------HhCCCCceEEEcCCCCCCCCccCCCC------------CC
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEK----------------LWGIPDRIKRVYPPCDTSGLQVLPLE------------RS 266 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~----------------~~~~~~~~~vi~ngvd~~~~~~~~~~------------~~ 266 (388)
.-..+-.+|.|-..+....+.+.+ ..+...++.++|||+|++.|.+.... ..
T Consensus 183 ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~ 262 (726)
T PRK14501 183 ILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL 262 (726)
T ss_pred HHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc
Confidence 011123345555555544444322 11223468899999998877543211 01
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcc----HHHHHHHHHHHHhcC-------CC
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD----EERLQSLKDKSIELK-------VD 335 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~----~~~~~~l~~~~~~~~-------l~ 335 (388)
.++..++++||+++.||++.+++|++.+.++++....+++|+++|.+. +++ .++.+++.+++++.+ ..
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~s-r~~~~~~~~l~~~~~~~v~~in~~~~~~~~~ 341 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPS-RTGVPQYQEMKREIDELVGRINGEFGTVDWT 341 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCC-CcchHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 345789999999999999999999999988763222247899997532 112 223334444433221 11
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHh-----CCceEeeCC
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAA-----GAIPIGKHF 387 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~-----G~PVI~~~~ 387 (388)
+.+.+.|.++++|+.++|+.||++++||..||||++++|||+| |.||++...
T Consensus 342 pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~ 398 (726)
T PRK14501 342 PIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA 398 (726)
T ss_pred eEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEeccc
Confidence 2355779999999999999999999999999999999999999 456666543
No 84
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.71 E-value=6.9e-16 Score=146.54 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=114.7
Q ss_pred CceEEEcCCCCCCCCccCCCCC------------CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 016535 244 DRIKRVYPPCDTSGLQVLPLER------------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG 311 (388)
Q Consensus 244 ~~~~vi~ngvd~~~~~~~~~~~------------~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG 311 (388)
.++.++|.|+|++.|....... -.++.+|+.++|+++.||++..++|++++.++++....++.|+++|
T Consensus 248 v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~ 327 (487)
T TIGR02398 248 VKLGAHPVGTDPERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTAC 327 (487)
T ss_pred EEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEe
Confidence 3478899999988775431111 0356899999999999999999999999999885544568999999
Q ss_pred CCCCCcc---HHHHHHHHHHHHhc-------CCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCC-
Q 016535 312 SCRNKSD---EERLQSLKDKSIEL-------KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA- 380 (388)
Q Consensus 312 ~~~~~~~---~~~~~~l~~~~~~~-------~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~- 380 (388)
.+...+. .++.+++++.+.+. +..+-+.+.+.+|.+++..+|+.||+++.||..|||+++..|+++|+.
T Consensus 328 ~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~ 407 (487)
T TIGR02398 328 VPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGL 407 (487)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcC
Confidence 7643211 23556666666654 556668889999999999999999999999999999999999999988
Q ss_pred ---ceEeeCC
Q 016535 381 ---IPIGKHF 387 (388)
Q Consensus 381 ---PVI~~~~ 387 (388)
|+|.|..
T Consensus 408 ~~GvLILSef 417 (487)
T TIGR02398 408 LDGVLVLSEF 417 (487)
T ss_pred CCCCEEEecc
Confidence 8888764
No 85
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-14 Score=126.83 Aligned_cols=314 Identities=18% Similarity=0.239 Sum_probs=194.8
Q ss_pred cCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccc
Q 016535 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (388)
Q Consensus 31 ~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 110 (388)
+.|+..|+++.-+. |-..|+.+ -|..|++.|.+++.+=|..+. +.+++. + ++++++..+...+.
T Consensus 10 ~~k~ra~vvVLGDv---GRSPRMqY-HA~Sla~~gf~VdliGy~~s~--p~e~l~----~------hprI~ih~m~~l~~ 73 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDV---GRSPRMQY-HALSLAKLGFQVDLIGYVESI--PLEELL----N------HPRIRIHGMPNLPF 73 (444)
T ss_pred cccceEEEEEeccc---CCChHHHH-HHHHHHHcCCeEEEEEecCCC--ChHHHh----c------CCceEEEeCCCCcc
Confidence 34444455665555 56666665 578899999555555555443 333332 1 33334444433222
Q ss_pred cccCCCCceehhhhhhhHHHHHHHHHhhcCCcEE-EecCCcccccchh----hhcCCeEEEEEeccccchhhhhhhhcCC
Q 016535 111 IEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYY-FDTSGYAFTYPLA----RIFGCRVICYTHYPTISLDMISRVREGS 185 (388)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div-~~~~~~~~~~~~~----~~~~~~~i~~~h~p~~~~~~~~~~~~~~ 185 (388)
+.....-.+-.+...+....+.|.++....+|++ +.+.....++.+. .+++++.++.+|.-.++..+ ...
T Consensus 74 ~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l--~~~--- 148 (444)
T KOG2941|consen 74 LQGGPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQL--KLK--- 148 (444)
T ss_pred cCCCchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHH--Hhh---
Confidence 2211100111122222333444555556678976 4443322222222 36799999999975433111 111
Q ss_pred ccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcC--CC-----CC---
Q 016535 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYP--PC-----DT--- 255 (388)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~n--gv-----d~--- 255 (388)
......+.+..+|.|+...+.||.-+|+++.+++++.+.+++. +..++|. +- |.
T Consensus 149 ---------------~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~-ra~v~YDrPps~~~~l~~~H~ 212 (444)
T KOG2941|consen 149 ---------------LGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGIN-RAKVLYDRPPSKPTPLDEQHE 212 (444)
T ss_pred ---------------cCCCCchHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCc-eeEEEecCCCCCCCchhHHHH
Confidence 1112244677788899999999999999999999999999852 3334432 11 10
Q ss_pred ---------CCCccCCCCC--------------------CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHh---cCCCC
Q 016535 256 ---------SGLQVLPLER--------------------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKL---DADLP 303 (388)
Q Consensus 256 ---------~~~~~~~~~~--------------------~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~---~~~~~ 303 (388)
..|..+..+. .+.+..++....+.++.++..+++|+....++. ....|
T Consensus 213 lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP 292 (444)
T KOG2941|consen 213 LFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLP 292 (444)
T ss_pred HHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCC
Confidence 0111100000 033456677777889999999999998542221 11258
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHHhCc--EEEEcCC-CCCCChHHHHHHHhC
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAV--VGIHSMI-DEHFGISVVEYMAAG 379 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~v~~~~l~~~~~~ad--v~v~ps~-~E~~~~~vlEAma~G 379 (388)
++-++|.|.|+.+| .+.+.++++.+. +|.+ ..+.+.+|.+.+++.|| +++++|. .=..|+.++....||
T Consensus 293 ~llciITGKGPlkE------~Y~~~I~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcg 365 (444)
T KOG2941|consen 293 SLLCIITGKGPLKE------KYSQEIHEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCG 365 (444)
T ss_pred cEEEEEcCCCchhH------HHHHHHHHhccc-ceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCC
Confidence 89999999998887 889999999886 6766 58889999999999999 5556654 347999999999999
Q ss_pred CceEeeCCC
Q 016535 380 AIPIGKHFK 388 (388)
Q Consensus 380 ~PVI~~~~~ 388 (388)
+||+|-|.+
T Consensus 366 lPvcA~~fk 374 (444)
T KOG2941|consen 366 LPVCAVNFK 374 (444)
T ss_pred Cceeeecch
Confidence 999998864
No 86
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.67 E-value=7.2e-15 Score=138.02 Aligned_cols=152 Identities=16% Similarity=0.075 Sum_probs=112.4
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCCCccC--C-------CCCCCCCcEEEEEcccCC---CCChH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVL--P-------LERSTEYPAIISVAQFRP---EKAHP 285 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~~~~~--~-------~~~~~~~~~il~vgrl~~---~Kg~~ 285 (388)
.+.+|.+++.|+..++.+.+.+-.+.++.+++||+ |...+... . ....+++..+++.|+... .||++
T Consensus 139 ~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~ 218 (363)
T cd03786 139 DKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLE 218 (363)
T ss_pred HHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHH
Confidence 35679999999999999977643357798999995 43211110 0 001133456778898775 79999
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC-CCcEEEccCCCHHHHHHHHHhCcEEEEcCC
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 364 (388)
.+++|++.+.++ ++.+++.|.++. .+++++.+++++. .++|.|.|..+.+++..+|+.||++|.+|.
T Consensus 219 ~l~~al~~l~~~------~~~vi~~~~~~~------~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg 286 (363)
T cd03786 219 EILEALAELAEE------DVPVVFPNHPRT------RPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG 286 (363)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCh------HHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc
Confidence 999999988432 467766664332 2377777777776 678999998888999999999999999984
Q ss_pred CCCCChHHHHHHHhCCceEeeCC
Q 016535 365 DEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 365 ~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
| +..|||++|+|+|+++.
T Consensus 287 ----g-i~~Ea~~~g~PvI~~~~ 304 (363)
T cd03786 287 ----G-IQEEASFLGVPVLNLRD 304 (363)
T ss_pred ----c-HHhhhhhcCCCEEeeCC
Confidence 3 47899999999999863
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.64 E-value=3.2e-14 Score=133.67 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=106.2
Q ss_pred cCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCCCcc--C---CCCC--CCCCcEEEEEc-ccC-CCCChHHHHHH
Q 016535 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQV--L---PLER--STEYPAIISVA-QFR-PEKAHPLQLEA 290 (388)
Q Consensus 221 ~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~~~~--~---~~~~--~~~~~~il~vg-rl~-~~Kg~~~ll~a 290 (388)
.+|.+++.|+..++.+.+.+-.+.++.+++||+ |...... . .... ..++.++++.+ |.. ..||++.+++|
T Consensus 141 ~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~~~~~vl~~~hr~~~~~k~~~~ll~a 220 (365)
T TIGR00236 141 IADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGEDKRYILLTLHRRENVGEPLENIFKA 220 (365)
T ss_pred HHHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCCCCCEEEEecCchhhhhhHHHHHHHH
Confidence 479999999999999987643356899999996 4211110 0 0000 01234455544 443 46999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCCh
Q 016535 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGI 370 (388)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~ 370 (388)
+..+.++. |+++++++|.++ .+..+.+ .+.++..++|.|+|.++..++..+++.||+++.+| |.
T Consensus 221 ~~~l~~~~----~~~~~vi~~~~~----~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~ 284 (365)
T TIGR00236 221 IREIVEEF----EDVQIVYPVHLN----PVVREPL---HKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GG 284 (365)
T ss_pred HHHHHHHC----CCCEEEEECCCC----hHHHHHH---HHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hh
Confidence 99987764 789999886542 2222222 33345557899999999999999999999999887 55
Q ss_pred HHHHHHHhCCceEee
Q 016535 371 SVVEYMAAGAIPIGK 385 (388)
Q Consensus 371 ~vlEAma~G~PVI~~ 385 (388)
.++|||+||+|||++
T Consensus 285 ~~~EA~a~g~PvI~~ 299 (365)
T TIGR00236 285 VQEEAPSLGKPVLVL 299 (365)
T ss_pred HHHHHHHcCCCEEEC
Confidence 689999999999996
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=3.8e-14 Score=131.03 Aligned_cols=158 Identities=25% Similarity=0.302 Sum_probs=127.8
Q ss_pred cCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCC--CcEEEEEcccCCCCChHHHHHHHHHHHHHh
Q 016535 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTE--YPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (388)
Q Consensus 221 ~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~--~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~ 298 (388)
..+.+++.++.....+..... ..+..+++++++...+.........+ ...++++|++.+.||++.+++++..+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (381)
T COG0438 150 LADRVIAVSPALKELLEALGV-PNKIVVIPNGIDTEKFAPARIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRG 228 (381)
T ss_pred cccEEEECCHHHHHHHHHhCC-CCCceEecCCcCHHHcCccccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhc
Confidence 478889999888666665543 34688899999987766421111122 378999999999999999999999998774
Q ss_pred cCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHh
Q 016535 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAA 378 (388)
Q Consensus 299 ~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~ 378 (388)
+++.+.++|.++.. .+.+.+.+++.+..+++.|+|.++.+++.++++.||++++||..|++|++++|||++
T Consensus 229 ----~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~ 299 (381)
T COG0438 229 ----PDIKLVIVGDGPER-----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAA 299 (381)
T ss_pred ----CCeEEEEEcCCCcc-----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhc
Confidence 45999999988653 225555777777778999999999889999999999999999889999999999999
Q ss_pred CCceEeeCCC
Q 016535 379 GAIPIGKHFK 388 (388)
Q Consensus 379 G~PVI~~~~~ 388 (388)
|+|||+++.+
T Consensus 300 g~pvi~~~~~ 309 (381)
T COG0438 300 GTPVIASDVG 309 (381)
T ss_pred CCcEEECCCC
Confidence 9999999863
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.60 E-value=7.5e-14 Score=129.25 Aligned_cols=143 Identities=13% Similarity=-0.049 Sum_probs=100.3
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHH
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFS 292 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~ 292 (388)
.+++..++.+|.++++|+.+++.+.+......++.++++..+....... ........++|+|++...++
T Consensus 115 ~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~yaG~l~k~~~--------- 183 (333)
T PRK09814 115 KEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIELV--KTPSFQKKINFAGNLEKSPF--------- 183 (333)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccccccccccccc--ccccCCceEEEecChhhchH---------
Confidence 3467788899999999999999998763224567666665543211111 11123468999999984321
Q ss_pred HHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcC-C-------
Q 016535 293 VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM-I------- 364 (388)
Q Consensus 293 ~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps-~------- 364 (388)
+.+. .++++|+++|.|++.+ ...++|+|.|+++.+++.++|+. |+.+.+. .
T Consensus 184 -l~~~----~~~~~l~i~G~g~~~~---------------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~ 242 (333)
T PRK09814 184 -LKNW----SQGIKLTVFGPNPEDL---------------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYG 242 (333)
T ss_pred -HHhc----CCCCeEEEECCCcccc---------------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccch
Confidence 1112 1689999999875432 23479999999999999999998 6544432 1
Q ss_pred ---CCCCChHHHHHHHhCCceEeeCC
Q 016535 365 ---DEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 365 ---~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
.-.+|..+.|+||||+|||+++.
T Consensus 243 ~y~~~~~P~K~~~ymA~G~PVI~~~~ 268 (333)
T PRK09814 243 EYYKYNNPHKLSLYLAAGLPVIVWSK 268 (333)
T ss_pred hhhhccchHHHHHHHHCCCCEEECCC
Confidence 13577789999999999999874
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.59 E-value=3.2e-14 Score=134.55 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHhhcCCcEEEecCCcc-cccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhh
Q 016535 126 FGSVYLSWEALCKFTPLYYFDTSGYA-FTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLS 201 (388)
Q Consensus 126 ~~~~~~~~~~l~~~~~Div~~~~~~~-~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (388)
+.......+.+++.+||+||... +. +... .++..++|++.+.+...+ .
T Consensus 71 ~~~~~~~~~~l~~~kPdivi~~~-~~~~~~~~a~~a~~~~ip~i~~~~~~~~--------------------------~- 122 (380)
T PRK00025 71 LKIRRRLKRRLLAEPPDVFIGID-APDFNLRLEKKLRKAGIPTIHYVSPSVW--------------------------A- 122 (380)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC-CCCCCHHHHHHHHHCCCCEEEEeCCchh--------------------------h-
Confidence 44445555678889999987654 22 2222 234568888765442110 0
Q ss_pred hhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCC-------CCCCCCCcE-EE
Q 016535 202 QCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP-------LERSTEYPA-II 273 (388)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~-------~~~~~~~~~-il 273 (388)
+. ... .+...+.+|.+++.|+..++.+.+. +. ++.++.|++......... .....+... ++
T Consensus 123 ~~----~~~----~~~~~~~~d~i~~~~~~~~~~~~~~-g~--~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~ 191 (380)
T PRK00025 123 WR----QGR----AFKIAKATDHVLALFPFEAAFYDKL-GV--PVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLAL 191 (380)
T ss_pred cC----chH----HHHHHHHHhhheeCCccCHHHHHhc-CC--CeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEE
Confidence 00 000 1112455799999999988888664 32 466777776422111000 011123344 34
Q ss_pred EEc-ccCCC-CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhc-CCCCcEEEccCCCHHHHH
Q 016535 274 SVA-QFRPE-KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRDLV 350 (388)
Q Consensus 274 ~vg-rl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~v~~~~l~ 350 (388)
+.| |.... ++++.+++|++.+.++. |+++++++|+ +.+..+++++.++++ ++. +.+.. +++.
T Consensus 192 ~~gsr~~~~~~~~~~l~~a~~~l~~~~----~~~~~ii~~~-----~~~~~~~~~~~~~~~~~~~--v~~~~----~~~~ 256 (380)
T PRK00025 192 LPGSRGQEIKRLLPPFLKAAQLLQQRY----PDLRFVLPLV-----NPKRREQIEEALAEYAGLE--VTLLD----GQKR 256 (380)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHhC----CCeEEEEecC-----ChhhHHHHHHHHhhcCCCC--eEEEc----ccHH
Confidence 445 33333 45789999999997764 7899999985 233344677777766 554 55543 5899
Q ss_pred HHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 351 KLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 351 ~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++|+.||+++.+| |.+.+|||++|+|+|+.
T Consensus 257 ~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 257 EAMAAADAALAAS-----GTVTLELALLKVPMVVG 286 (380)
T ss_pred HHHHhCCEEEECc-----cHHHHHHHHhCCCEEEE
Confidence 9999999999987 88889999999999975
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.56 E-value=3.2e-13 Score=127.20 Aligned_cols=204 Identities=13% Similarity=0.033 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHhhcCCcEEEecCCcccccch---hhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhh
Q 016535 126 FGSVYLSWEALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (388)
Q Consensus 126 ~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~---~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (388)
++......+.+++.+||+|+...+..+...+ ++..++|++.|+ .|.. |.. ...
T Consensus 75 ~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~--------waw---------------~~~ 130 (385)
T TIGR00215 75 LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQV--------WAW---------------RKW 130 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcH--------hhc---------------Ccc
Confidence 3344455567888999998876642222223 346789988766 3331 100 000
Q ss_pred hhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCc--cCC------CCCCCCCcEEEE
Q 016535 203 CKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ--VLP------LERSTEYPAIIS 274 (388)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~--~~~------~~~~~~~~~il~ 274 (388)
-.+...+.+|.+++.++..++.+.+. + .+..++.||+-..... +.. ....++...++.
T Consensus 131 -----------~~r~l~~~~d~v~~~~~~e~~~~~~~-g--~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilv 196 (385)
T TIGR00215 131 -----------RAKKIEKATDFLLAILPFEKAFYQKK-N--VPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLAL 196 (385)
T ss_pred -----------hHHHHHHHHhHhhccCCCcHHHHHhc-C--CCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEE
Confidence 02333455899999999998888753 3 3666788887322211 100 111133455554
Q ss_pred E-c-ccCC-CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 275 V-A-QFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 275 v-g-rl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
. | |..+ .|+++.+++|++.+.++. |++++++.+.. ....+.+++..++++...+|.+.+. +..+
T Consensus 197 l~GSR~aei~k~~~~ll~a~~~l~~~~----p~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~ 263 (385)
T TIGR00215 197 LPGSRGSEVEKLFPLFLKAAQLLEQQE----PDLRRVLPVVN-----FKRRLQFEQIKAEYGPDLQLHLIDG----DARK 263 (385)
T ss_pred ECCCCHHHHHHhHHHHHHHHHHHHHhC----CCeEEEEEeCC-----chhHHHHHHHHHHhCCCCcEEEECc----hHHH
Confidence 4 3 6665 789999999999998775 78888776542 1122355666666655556776643 4567
Q ss_pred HHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 352 LLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 352 ~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+|+.||++|.+| |.+.+|+|++|+|+|..
T Consensus 264 ~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~ 292 (385)
T TIGR00215 264 AMFAADAALLAS-----GTAALEAALIKTPMVVG 292 (385)
T ss_pred HHHhCCEEeecC-----CHHHHHHHHcCCCEEEE
Confidence 999999999999 77888999999998876
No 92
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.54 E-value=2.3e-14 Score=114.74 Aligned_cols=100 Identities=28% Similarity=0.307 Sum_probs=75.4
Q ss_pred CcEEEEEcccCCCCChHHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLE-AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~-a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
-+++++.|++.+.|+++.+++ ++.++.++. |+++|+++|.+++ +++++ ..++|+++|++ +
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~----p~~~l~i~G~~~~--------~l~~~-----~~~~v~~~g~~--~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKH----PDIELIIIGNGPD--------ELKRL-----RRPNVRFHGFV--E 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHS----TTEEEEEECESS---------HHCCH-----HHCTEEEE-S---H
T ss_pred cccccccccccccccccchhhhHHHHHHHHC----cCEEEEEEeCCHH--------HHHHh-----cCCCEEEcCCH--H
Confidence 367899999999999999999 999999886 8999999998542 23333 12589999999 6
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCChHHHHHHHhCCceEeeCC
Q 016535 348 DLVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~-~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
++.+++++||+++.|+. .|+++.+++|||++|+|||+++.
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~ 103 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN 103 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc
Confidence 89999999999999985 67899999999999999999863
No 93
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.51 E-value=2.2e-13 Score=113.84 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=92.6
Q ss_pred EEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCC
Q 016535 37 VAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTY 116 (388)
Q Consensus 37 I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (388)
|++++.+....||+|+++.+++++|.++| ++|++++........ .+ .. .......... .
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G--~~v~v~~~~~~~~~~---~~-----~~--------~~~~~~~~~~--~- 59 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG--HEVTVVSPGVKDPIE---EE-----LV--------KIFVKIPYPI--R- 59 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT---EEEEEESS-TTS-S---ST-----EE--------EE---TT-SS--T-
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC--CEEEEEEcCCCccch---hh-----cc--------ceeeeeeccc--c-
Confidence 45666666666899999999999999999 889998876421110 00 00 0000000000 0
Q ss_pred CceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccc
Q 016535 117 PRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQ 196 (388)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
+. ....+.......+.+.+.+||+||.+.............++|.+.+.|.+.......
T Consensus 60 ~~---~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~~~~~v~~~H~~~~~~~~~------------------ 118 (177)
T PF13439_consen 60 KR---FLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACRKVPIVYTIHGPYFERRFL------------------ 118 (177)
T ss_dssp SS-----HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHHCSCEEEEE-HHH--HHTT------------------
T ss_pred cc---cchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHhccCCCEEEEeCCCccccccc------------------
Confidence 00 111222233444567778999997665433222222333899999999754210000
Q ss_pred cchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCc
Q 016535 197 SNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQ 259 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~ 259 (388)
......+......+.+...+.+|.++++|+.+++.+.+ ++. +.++.+||||+|++.|+
T Consensus 119 ----~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 119 ----KSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp ----TTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred ----ccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 00001111222223455578999999999999999999 665 58899999999988763
No 94
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.43 E-value=6.9e-12 Score=127.04 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=137.2
Q ss_pred cCC-cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 139 FTP-LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 139 ~~~-Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.++ |+|+.+.-+.+.+| +.+ ....++.+++|.|..+.+.+..+..+ . .+
T Consensus 229 ~~~gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r-------------------~----el---- 281 (934)
T PLN03064 229 YEEGDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSR-------------------S----EL---- 281 (934)
T ss_pred cCCCCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcH-------------------H----HH----
Confidence 455 57654444344445 333 45688999999999877766533211 0 11
Q ss_pred HHHHhccCCEEEECChhHHHHHHHH----h------------CCCCceEEEcCCCCCCCCccCCCCC------------C
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKL----W------------GIPDRIKRVYPPCDTSGLQVLPLER------------S 266 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~----~------------~~~~~~~vi~ngvd~~~~~~~~~~~------------~ 266 (388)
-..+-.+|.|=..+..-+++|.+. . +...++.+.|.|||++.|...-... -
T Consensus 282 -L~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~ 360 (934)
T PLN03064 282 -LRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF 360 (934)
T ss_pred -HHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh
Confidence 122235677777776666665431 1 1123466789999987765321111 0
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHH----Hh----cCCCC--
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS----IE----LKVDG-- 336 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~----~~----~~l~~-- 336 (388)
.++.+|+.++|+++.||+...++|++.+.++++....++.|+-+.... +.+.+..+++++.+ .+ +|-.+
T Consensus 361 ~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~ps-r~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~ 439 (934)
T PLN03064 361 AGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPT-RTDVPEYQKLTSQVHEIVGRINGRFGTLTAV 439 (934)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCC-CCCcHHHHHHHHHHHHHHHHHhhhccCCCcc
Confidence 346799999999999999999999999988874433445666555332 21322223333333 22 11110
Q ss_pred cEEE-ccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHh-----CCceE
Q 016535 337 NVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAA-----GAIPI 383 (388)
Q Consensus 337 ~V~~-~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~-----G~PVI 383 (388)
-|.+ ...++.+++.++|+.||++|+||..|||+++..|||+| |.+|+
T Consensus 440 Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLIL 492 (934)
T PLN03064 440 PIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLIL 492 (934)
T ss_pred eEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEE
Confidence 1443 45589999999999999999999999999999999999 55555
No 95
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.39 E-value=6.3e-12 Score=121.67 Aligned_cols=153 Identities=17% Similarity=0.125 Sum_probs=119.7
Q ss_pred hccCCEEEECChhHHHHHHHHhCCC---CceEEEcCCCCCCCCccCCCCCCCCCcEEEEEc--ccCCCCChHHHHHHHHH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIP---DRIKRVYPPCDTSGLQVLPLERSTEYPAIISVA--QFRPEKAHPLQLEAFSV 293 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~---~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vg--rl~~~Kg~~~ll~a~~~ 293 (388)
...+|.+|+.++..++.+++.++.. .++..||.+.- ... . + ........+++++ |+ ++|.++.+|+|+.+
T Consensus 270 ~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~-~-~s~r~~~~~I~v~idrL-~ek~~~~~I~av~~ 344 (519)
T TIGR03713 270 LSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-L-G-QSQQLYETEIGFWIDGL-SDEELQQILQQLLQ 344 (519)
T ss_pred hhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-c-C-hhhcccceEEEEEcCCC-ChHHHHHHHHHHHH
Confidence 3567899999988888887766521 34566775543 222 1 1 1113346788888 99 99999999999999
Q ss_pred HHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-----------------------------CcEEEccCC
Q 016535 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-----------------------------GNVEFYKNL 344 (388)
Q Consensus 294 l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----------------------------~~V~~~g~v 344 (388)
+..++ |+++|.+.|.+.+ .+..+.+++.++++++. +.|.|.|..
T Consensus 345 ~~~~~----p~~~L~~~gy~~~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~ 417 (519)
T TIGR03713 345 YILKN----PDYELKILTYNND---NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLT 417 (519)
T ss_pred HHhhC----CCeEEEEEEecCc---hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecC
Confidence 99986 9999999998743 23345666666666555 689999999
Q ss_pred CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 345 ~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
+..++.+.|..+.++|.+|..|+|+ +.+||+++|+|+|-
T Consensus 418 ~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqIn 456 (519)
T TIGR03713 418 NEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQIN 456 (519)
T ss_pred CHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCeee
Confidence 8889999999999999999999999 99999999999993
No 96
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.38 E-value=5.7e-11 Score=112.82 Aligned_cols=174 Identities=16% Similarity=0.093 Sum_probs=99.8
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCC-------------------------CC
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER-------------------------ST 267 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~-------------------------~~ 267 (388)
.+|+.+...||...++|+-++.+.+...+.. .-.|+|||++.+.+......+ .+
T Consensus 213 ~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~-pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d 291 (633)
T PF05693_consen 213 SIERAAAHYADVFTTVSEITAKEAEHLLKRK-PDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLD 291 (633)
T ss_dssp HHHHHHHHHSSEEEESSHHHHHHHHHHHSS---SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GG
T ss_pred HHHHHHHHhcCeeeehhhhHHHHHHHHhCCC-CCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 3789999999999999999999998877643 334799999876554321100 03
Q ss_pred CCcEEEEEcccC-CCCChHHHHHHHHHHHHHhcCCCCCcE---EEEEeCCCCCccHH------H----------------
Q 016535 268 EYPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRPR---LQFVGSCRNKSDEE------R---------------- 321 (388)
Q Consensus 268 ~~~~il~vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~---l~ivG~~~~~~~~~------~---------------- 321 (388)
+..++...||.+ ..||+|.+|||+++|....+....+.+ |+++-.....-+.+ .
T Consensus 292 ~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g 371 (633)
T PF05693_consen 292 KTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIG 371 (633)
T ss_dssp GEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 357788889999 489999999999999654322123333 33433321100000 0
Q ss_pred ---------------------------------------------------HHHHHHHHHhcCCC----Cc--EEEcc-C
Q 016535 322 ---------------------------------------------------LQSLKDKSIELKVD----GN--VEFYK-N 343 (388)
Q Consensus 322 ---------------------------------------------------~~~l~~~~~~~~l~----~~--V~~~g-~ 343 (388)
.+.+...++++++. |+ |+|.+ +
T Consensus 372 ~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~y 451 (633)
T PF05693_consen 372 KRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEY 451 (633)
T ss_dssp HHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S-
T ss_pred HHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecc
Confidence 01222222332321 34 44443 2
Q ss_pred CC------HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 344 LL------YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 344 v~------~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
++ .-+..+++..||+.|+||+||++|.+.+|+.++|+|.|+||-
T Consensus 452 L~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnL 501 (633)
T PF05693_consen 452 LSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNL 501 (633)
T ss_dssp --TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETT
T ss_pred ccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccc
Confidence 21 457888999999999999999999999999999999999983
No 97
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.24 E-value=6.8e-11 Score=96.92 Aligned_cols=156 Identities=19% Similarity=0.122 Sum_probs=80.3
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhh
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
||+++++.+++++|.++| |+|++++...+. . ..+ ....+..+..+..... .. .+.. ..
T Consensus 1 GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~--~--~~~-------~~~~~~~~~~~~~~~~----~~-~~~~----~~ 58 (160)
T PF13579_consen 1 GGIERYVRELARALAARG--HEVTVVTPQPDP--E--DDE-------EEEDGVRVHRLPLPRR----PW-PLRL----LR 58 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT---EEEEEEE---G--G--G-S-------EEETTEEEEEE--S-S----SS-GGGH----CC
T ss_pred CCHHHHHHHHHHHHHHCC--CEEEEEecCCCC--c--ccc-------cccCCceEEeccCCcc----ch-hhhh----HH
Confidence 699999999999999999 888888876421 1 000 0112223333322110 00 0000 11
Q ss_pred HHHHHHHHH--hhcCCcEEEecCCcccccc-hhh-hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhh
Q 016535 128 SVYLSWEAL--CKFTPLYYFDTSGYAFTYP-LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (388)
Q Consensus 128 ~~~~~~~~l--~~~~~Div~~~~~~~~~~~-~~~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (388)
........+ .+.+||+||.+........ +++ ..++|.++++|.......
T Consensus 59 ~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~--------------------------- 111 (160)
T PF13579_consen 59 FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLFRRG--------------------------- 111 (160)
T ss_dssp HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T-------------------------------
T ss_pred HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECCCchhhc---------------------------
Confidence 112223334 6789999987764221112 444 678999999995321000
Q ss_pred hhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCC
Q 016535 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP 252 (388)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ng 252 (388)
..+..+.+.++++..++.+|.++++|+..++.+.+....++++.++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 112 SRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRIHVIPNG 160 (160)
T ss_dssp --HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGEEE----
T ss_pred cchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcEEEeCcC
Confidence 1122334456788999999999999999999999954335899999997
No 98
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=5.8e-09 Score=96.21 Aligned_cols=261 Identities=16% Similarity=0.119 Sum_probs=143.8
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhh
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
||--.-..-++++|.++|++ ++.++.+.... +.. -.... ...+..++..++.....+..+......+.
T Consensus 11 GGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~--e~~--------l~~~~-~~~~~~I~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T COG0707 11 GGHVFPALALAEELAKRGWE-QVIVLGTGDGL--EAF--------LVKQY-GIEFELIPSGGLRRKGSLKLLKAPFKLLK 78 (357)
T ss_pred ccchhHHHHHHHHHHhhCcc-EEEEecccccc--eee--------ecccc-CceEEEEecccccccCcHHHHHHHHHHHH
Confidence 45555567899999999965 56665433210 100 00011 22333333322222222221222233344
Q ss_pred HHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhh
Q 016535 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (388)
Q Consensus 128 ~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (388)
....+.+.+++.+||+|+.+.++....+ .++..++|++. |..+....
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i--hEqn~~~G----------------------------- 127 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVII--HEQNAVPG----------------------------- 127 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEE--EecCCCcc-----------------------------
Confidence 5555666789999999999988764433 44577888775 44331110
Q ss_pred HHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCc-cCCC---CCCCCCcEEEEEcccCCC
Q 016535 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ-VLPL---ERSTEYPAIISVAQFRPE 281 (388)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~-~~~~---~~~~~~~~il~vgrl~~~ 281 (388)
.. -++..+.++.+.+.-+. . ..+..+++..+..||+..+... +... ....++.+++.+|.-
T Consensus 128 ~a-------nk~~~~~a~~V~~~f~~----~-~~~~~~~~~~~tG~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~GGS--- 192 (357)
T COG0707 128 LA-------NKILSKFAKKVASAFPK----L-EAGVKPENVVVTGIPVRPEFEELPAAEVRKDGRLDKKTILVTGGS--- 192 (357)
T ss_pred hh-------HHHhHHhhceeeecccc----c-cccCCCCceEEecCcccHHhhccchhhhhhhccCCCcEEEEECCc---
Confidence 11 11222335565554332 1 2222245788899999866554 1111 111245666666543
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE
Q 016535 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 282 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 361 (388)
.|...+-+++..+..... .++.++...+ ... .+++++..++++. +++.++. +++.++|+.||++|.
T Consensus 193 ~Ga~~ln~~v~~~~~~l~---~~~~v~~~~G-----~~~-~~~~~~~~~~~~~---~~v~~f~--~dm~~~~~~ADLvIs 258 (357)
T COG0707 193 QGAKALNDLVPEALAKLA---NRIQVIHQTG-----KND-LEELKSAYNELGV---VRVLPFI--DDMAALLAAADLVIS 258 (357)
T ss_pred chhHHHHHHHHHHHHHhh---hCeEEEEEcC-----cch-HHHHHHHHhhcCc---EEEeeHH--hhHHHHHHhccEEEe
Confidence 233333333333333321 1466666554 222 4466666666554 8888997 889999999998886
Q ss_pred cCCCCCCChHHHHHHHhCCceEe
Q 016535 362 SMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 362 ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
= +-++++.|..++|+|.|-
T Consensus 259 R----aGa~Ti~E~~a~g~P~Il 277 (357)
T COG0707 259 R----AGALTIAELLALGVPAIL 277 (357)
T ss_pred C----CcccHHHHHHHhCCCEEE
Confidence 5 457899999999999985
No 99
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.20 E-value=3e-10 Score=107.54 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=109.8
Q ss_pred ccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhc
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD 299 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~ 299 (388)
.+.|.||+.++...+.+.++++...++.++|-|+-.. + +... .....+++++. +..|++++.+.++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i~~-~---~~~~-r~~~~~l~~t~-------s~~I~~i~~Lv~~l- 304 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYP-F---KKDN-KYRKQALILTN-------SDQIEHLEEIVQAL- 304 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEEEEEEe-e---cccc-CCcccEEEECC-------HHHHHHHHHHHHhC-
Confidence 5679999999999999988887556677777776421 1 1111 22355777772 89999999999996
Q ss_pred CCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhC
Q 016535 300 ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG 379 (388)
Q Consensus 300 ~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G 379 (388)
|+++|.| |.+.+.. ++|.++ +++ +|++.++.....++.++|..||+++..|..|++++++.||++.|
T Consensus 305 ---Pd~~f~I-ga~te~s-----~kL~~L-~~y---~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G 371 (438)
T TIGR02919 305 ---PDYHFHI-AALTEMS-----SKLMSL-DKY---DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYN 371 (438)
T ss_pred ---CCcEEEE-EecCccc-----HHHHHH-Hhc---CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcC
Confidence 9999999 8765422 377777 665 45555555545689999999999999999999999999999999
Q ss_pred CceEeeCC
Q 016535 380 AIPIGKHF 387 (388)
Q Consensus 380 ~PVI~~~~ 387 (388)
+||++.|.
T Consensus 372 ~pI~afd~ 379 (438)
T TIGR02919 372 LLILGFEE 379 (438)
T ss_pred CcEEEEec
Confidence 99999874
No 100
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.17 E-value=3.6e-09 Score=104.03 Aligned_cols=174 Identities=17% Similarity=0.107 Sum_probs=129.5
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHHHhCC--------CCceEEEcCCCCCCCCccC------------C----------
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGI--------PDRIKRVYPPCDTSGLQVL------------P---------- 262 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~--------~~~~~vi~ngvd~~~~~~~------------~---------- 262 (388)
.+.+.++..||.+.++|+.-.+..++.++. ..++.-|-||+|.....+. .
T Consensus 254 nm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~ 333 (601)
T TIGR02094 254 NMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEEL 333 (601)
T ss_pred eHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhh
Confidence 356778889999999999888744432221 2347789999987643221 0
Q ss_pred ------------CC-------------------------------------CCCCCcEEEEEcccCCCCChHHHHHHHHH
Q 016535 263 ------------LE-------------------------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (388)
Q Consensus 263 ------------~~-------------------------------------~~~~~~~il~vgrl~~~Kg~~~ll~a~~~ 293 (388)
.. ..++.+.+++++|+..+||+++++.++..
T Consensus 334 ~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~ 413 (601)
T TIGR02094 334 WEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLER 413 (601)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHH
Confidence 00 01234588999999999999999999998
Q ss_pred HHHHhcCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE-cCC-CCCCC
Q 016535 294 ALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH-SMI-DEHFG 369 (388)
Q Consensus 294 l~~~~~~~~~~~~l~ivG~~~~~--~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~-ps~-~E~~~ 369 (388)
+.+-..+...++++++.|.+.+. ..+++.+.+.+.+++...+++|.|+...+.+--..++++||++++ ||. +|+.|
T Consensus 414 l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacG 493 (601)
T TIGR02094 414 LARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASG 493 (601)
T ss_pred HHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCch
Confidence 87521100137999999998543 223467778888877567789999988877777779999999999 998 99999
Q ss_pred hHHHHHHHhCCceEeeC
Q 016535 370 ISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 370 ~~vlEAma~G~PVI~~~ 386 (388)
++-+=||..|.+.+++-
T Consensus 494 tsqMka~~nGgL~~sv~ 510 (601)
T TIGR02094 494 TSGMKAAMNGVLNLSIL 510 (601)
T ss_pred HHHHHHHHcCCceeecc
Confidence 99999999999988763
No 101
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=2.6e-08 Score=91.01 Aligned_cols=264 Identities=19% Similarity=0.134 Sum_probs=161.0
Q ss_pred ChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhhH
Q 016535 49 GGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGS 128 (388)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
|--+.+.-|+++|.+..+++.+++-|.+. ...+ .....++- .+...+++.. .
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~--Tg~e---~a~~~~~~----~v~h~YlP~D-------~------------ 111 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTP--TGAE---RAAALFGD----SVIHQYLPLD-------L------------ 111 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCc--cHHH---HHHHHcCC----CeEEEecCcC-------c------------
Confidence 44456677999999996667766655442 1122 22222221 1223333321 0
Q ss_pred HHHHHHHHhhcCCcEE--EecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhH
Q 016535 129 VYLSWEALCKFTPLYY--FDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (388)
Q Consensus 129 ~~~~~~~l~~~~~Div--~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
.....+.++..+||++ ..+.-|+..+.-++..++|.+. +.. ..+. . ...
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~L-vNa-RLS~---------------------r------S~~ 162 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVL-VNA-RLSD---------------------R------SFA 162 (419)
T ss_pred hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEE-Eee-eech---------------------h------hhH
Confidence 1122334677899955 4445555544455577888765 221 0000 0 001
Q ss_pred HHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCC-CCCCCCccCC-----CCCC-CC-CcEEEEEccc
Q 016535 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP-CDTSGLQVLP-----LERS-TE-YPAIISVAQF 278 (388)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ng-vd~~~~~~~~-----~~~~-~~-~~~il~vgrl 278 (388)
.|..+..+.+.+.+..|.|++.|+..++++.+.+.. ++.+..|= .|.+.-.... .... .. ..+++..+.
T Consensus 163 ~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~--~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaST- 239 (419)
T COG1519 163 RYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAK--PVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAAST- 239 (419)
T ss_pred HHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCc--ceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEecC-
Confidence 122334456777788899999999999999987542 35555552 1211110000 0000 11 456666665
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-------------CcEEEccCCC
Q 016535 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-------------GNVEFYKNLL 345 (388)
Q Consensus 279 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-------------~~V~~~g~v~ 345 (388)
...--+.++++.+.+++++ |+..+++|=. ..|..+++.+++++.|+. .+|..-..+
T Consensus 240 -H~GEeei~l~~~~~l~~~~----~~~llIlVPR-----HpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm- 308 (419)
T COG1519 240 -HEGEEEIILDAHQALKKQF----PNLLLILVPR-----HPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM- 308 (419)
T ss_pred -CCchHHHHHHHHHHHHhhC----CCceEEEecC-----ChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH-
Confidence 3333345889999999996 8999999987 666678999999998775 234444444
Q ss_pred HHHHHHHHHhCcE-EEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 346 YRDLVKLLGGAVV-GIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 346 ~~~l~~~~~~adv-~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
-|+..+|+.||+ ||--|..+.-|--++|+.++|+|||.
T Consensus 309 -GEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~ 347 (419)
T COG1519 309 -GELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF 347 (419)
T ss_pred -hHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEe
Confidence 789999999995 45567777778899999999999996
No 102
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=6.3e-08 Score=91.09 Aligned_cols=277 Identities=14% Similarity=0.111 Sum_probs=172.7
Q ss_pred hcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecc
Q 016535 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYR 107 (388)
Q Consensus 28 ~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 107 (388)
++|.+|+++|+|+..++... ..+.....+.+++.+.. .+|..|.-.. ...+...+++.. ++
T Consensus 253 ~~~~~~rlRvGylS~dlr~H-avg~l~~~v~e~hDRdk--fEvfay~~g~-~~~dal~~rI~a--------~~------- 313 (620)
T COG3914 253 IKRNGKRLRVGYLSSDLRSH-AVGFLLRWVFEYHDRDK--FEVFAYSLGP-PHTDALQERISA--------AV------- 313 (620)
T ss_pred ccccccceeEEEeccccccc-hHHHHHHHHHHHhchhh--eEEEEEecCC-CCchhHHHHHHH--------hh-------
Confidence 56778999999999999887 88888889999999988 7777775442 111222222211 11
Q ss_pred ccccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEe-ccccchhhhhhhhcC
Q 016535 108 RKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH-YPTISLDMISRVREG 184 (388)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h-~p~~~~~~~~~~~~~ 184 (388)
..|.+.+.... -.....+.+...||+++..++..... +...+..|+.+.+- +|. +..+ .
T Consensus 314 ~~~~~~~~~dd-----------~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~a-T~g~-p----- 375 (620)
T COG3914 314 EKWYPIGRMDD-----------AEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPA-TTGS-P----- 375 (620)
T ss_pred hheeccCCcCH-----------HHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeeccccc-ccCC-C-----
Confidence 12222111111 11223456778999887776443322 44456677755433 222 0000 0
Q ss_pred CccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHH-hCCCCceEEEcCCCCCCCC-ccCC
Q 016535 185 SSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-WGIPDRIKRVYPPCDTSGL-QVLP 262 (388)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~-~~~~~~~~vi~ngvd~~~~-~~~~ 262 (388)
. .-+. -+|..+.. ++..+++.+. +..+ ..+-|.|-... .+.+
T Consensus 376 -----------------~---~DY~-----------I~D~y~vP-p~ae~yysEkl~RLp----~cy~p~d~~~~v~p~~ 419 (620)
T COG3914 376 -----------------N---MDYF-----------ISDPYTVP-PTAEEYYSEKLWRLP----QCYQPVDGFEPVTPPP 419 (620)
T ss_pred -----------------c---ceEE-----------eeCceecC-chHHHHHHHHHHhcc----cccCCCCCcccCCCCc
Confidence 0 0000 13555555 6666666553 3221 34445542211 1111
Q ss_pred CCC--CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC-CCcEE
Q 016535 263 LER--STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVE 339 (388)
Q Consensus 263 ~~~--~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l-~~~V~ 339 (388)
... .-.+..++|.+--...|-.+.+.+-..++.+.. |+-.|++-|+|+ +.+....+++.+++.|+ .++++
T Consensus 420 sR~~lglp~~avVf~c~~n~~K~~pev~~~wmqIL~~v----P~Svl~L~~~~~---~~~~~~~l~~la~~~Gv~~eRL~ 492 (620)
T COG3914 420 SRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAV----PNSVLLLKAGGD---DAEINARLRDLAEREGVDSERLR 492 (620)
T ss_pred chhhcCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEecCCC---cHHHHHHHHHHHHHcCCChhhee
Confidence 111 111223344443456788888888888887775 898999988875 66788899999999999 57899
Q ss_pred EccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 340 ~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
|.+..++++..+.|.-||+++-+..| +-+.+.+||+-+|+||++-
T Consensus 493 f~p~~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~ 537 (620)
T COG3914 493 FLPPAPNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTR 537 (620)
T ss_pred ecCCCCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeee
Confidence 99999999999999999999987666 4478899999999999974
No 103
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.06 E-value=3.3e-08 Score=93.46 Aligned_cols=294 Identities=14% Similarity=0.059 Sum_probs=160.0
Q ss_pred CCCChhhHHHHHHHHHhhcCCCceEE---EEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehh
Q 016535 46 DGGGGERVLWCAVKAIQEESPDLDCI---VYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMI 122 (388)
Q Consensus 46 ~gGG~~~~~~~l~~~L~~~g~~~~v~---v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (388)
.|-|-..+...++++|.++-..++|. .+.+. .....+ .+.... ....++.+++.....+..+..+
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~-----~~~e~~-----~ip~~g--~~~~~~sgg~~~~~~~~~~~~~ 72 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEG-----RAYQNL-----GIPIIG--PTKELPSGGFSYQSLRGLLRDL 72 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCC-----HHHhhC-----CCceeC--CCCCCCCCCccCCCHHHHHHHH
Confidence 45577777889999999842226766 43332 111111 121111 1111222222111111222233
Q ss_pred hh-hhhHHHHHHHHHhhc--CCcEEEecCCcccccchhhhcCCeEEEEE-eccccchhhhhhhhcCCccccCCccccccc
Q 016535 123 GQ-SFGSVYLSWEALCKF--TPLYYFDTSGYAFTYPLARIFGCRVICYT-HYPTISLDMISRVREGSSMYNNNASIAQSN 198 (388)
Q Consensus 123 ~~-~~~~~~~~~~~l~~~--~~Div~~~~~~~~~~~~~~~~~~~~i~~~-h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
.. .++..+..++++++. +||+|+...++. ...++|+.++|.+++. |..... +....+. ...+
T Consensus 73 ~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~-------~~~~~~~------~~~~ 138 (396)
T TIGR03492 73 RAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY-------WESGPRR------SPSD 138 (396)
T ss_pred HhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee-------ecCCCCC------ccch
Confidence 33 455566677778888 999999998855 3337788999987622 432211 0000000 0000
Q ss_pred hhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCC-CCCcEEEEEcc
Q 016535 199 WLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERS-TEYPAIISVAQ 277 (388)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~-~~~~~il~vgr 277 (388)
++..+.-..+..++ -.+...+.|+.+.+..+...+.+.+. + .++.++.|++-............ ....++++.|.
T Consensus 139 ~~~~~~G~~~~p~e-~n~l~~~~a~~v~~~~~~t~~~l~~~-g--~k~~~vGnPv~d~l~~~~~~~l~~~~~~lllLpGS 214 (396)
T TIGR03492 139 EYHRLEGSLYLPWE-RWLMRSRRCLAVFVRDRLTARDLRRQ-G--VRASYLGNPMMDGLEPPERKPLLTGRFRIALLPGS 214 (396)
T ss_pred hhhccCCCccCHHH-HHHhhchhhCEEeCCCHHHHHHHHHC-C--CeEEEeCcCHHhcCccccccccCCCCCEEEEECCC
Confidence 00000000101110 12334467999999999999988754 3 37888999873222211111111 22244445554
Q ss_pred cC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC--------------CcEEEc
Q 016535 278 FR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD--------------GNVEFY 341 (388)
Q Consensus 278 l~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~--------------~~V~~~ 341 (388)
-. ..++++.++++++.+.++ +++++++.-.+.. +. +.+++..++.++. +++.+.
T Consensus 215 R~ae~~~~lp~~l~al~~L~~~-----~~~~~v~~~~~~~--~~---~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~ 284 (396)
T TIGR03492 215 RPPEAYRNLKLLLRALEALPDS-----QPFVFLAAIVPSL--SL---EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVL 284 (396)
T ss_pred CHHHHHccHHHHHHHHHHHhhC-----CCeEEEEEeCCCC--CH---HHHHHHHHhcCceecCCccccchhhccCceEEE
Confidence 32 357788999999999654 4777766542211 11 2455555544443 235665
Q ss_pred cCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 342 g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+. +++.++|+.||++|..| |.+..|++++|+|+|...
T Consensus 285 ~~~--~~~~~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip 322 (396)
T TIGR03492 285 LGR--GAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLP 322 (396)
T ss_pred ech--HhHHHHHHhCCEEEECc-----CHHHHHHHHhCCCEEEEe
Confidence 554 78999999999999884 456699999999999753
No 104
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.03 E-value=5e-08 Score=87.83 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=71.0
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
+.++++.|..++.+....+++++..+... .++.+ ++|.+.. ..+++++.++.. +++++.+++ ++
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~-----~~i~v-v~G~~~~-----~~~~l~~~~~~~---~~i~~~~~~--~~ 234 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQIN-----ISITL-VTGSSNP-----NLDELKKFAKEY---PNIILFIDV--EN 234 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccC-----ceEEE-EECCCCc-----CHHHHHHHHHhC---CCEEEEeCH--HH
Confidence 46788999888877677788888765211 13333 6665422 124677776654 489999998 89
Q ss_pred HHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 349 l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+.++|+.||+.|.+ .|.++.|++++|+|+|+-
T Consensus 235 m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i 266 (279)
T TIGR03590 235 MAELMNEADLAIGA-----AGSTSWERCCLGLPSLAI 266 (279)
T ss_pred HHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEE
Confidence 99999999999984 568999999999999974
No 105
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.03 E-value=3.6e-08 Score=90.81 Aligned_cols=268 Identities=15% Similarity=0.075 Sum_probs=139.4
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|||+|..... |-|-......++++| +| ++|++++.+.. .....+ .+...-.++....... .
T Consensus 1 MkIl~~v~~~--G~GH~~R~~~la~~L--rg--~~v~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~-------~ 61 (318)
T PF13528_consen 1 MKILFYVQGH--GLGHASRCLALARAL--RG--HEVTFITSGPA---PEFLKP---RFPVREIPGLGPIQEN-------G 61 (318)
T ss_pred CEEEEEeCCC--CcCHHHHHHHHHHHH--cc--CceEEEEcCCc---HHHhcc---ccCEEEccCceEeccC-------C
Confidence 7899987664 446777778899999 48 78888887641 122211 1211111111111100 0
Q ss_pred CCCceehhh-------hhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCcc
Q 016535 115 TYPRFTMIG-------QSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSM 187 (388)
Q Consensus 115 ~~~~~~~~~-------~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~ 187 (388)
.......+. ...+......+.+.+.+||+|+.-.. +.+...++..++|.+...|..........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~~~~~-------- 132 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLHPNFW-------- 132 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHcccccCC--------
Confidence 111101111 11122222334577889998876543 33334667889999887775332110000
Q ss_pred ccCCccccccchhhhhhhHHHHHHHHH-HHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCC
Q 016535 188 YNNNASIAQSNWLSQCKIVYYTFFSWM-YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERS 266 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~ 266 (388)
... ..........+ .+.....++..+..+-... . ....+...+++.+....... ...
T Consensus 133 ------------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~----~~~~~~~~~~p~~~~~~~~~---~~~ 190 (318)
T PF13528_consen 133 ------------LPW-DQDFGRLIERYIDRYHFPPADRRLALSFYPP--L----PPFFRVPFVGPIIRPEIREL---PPE 190 (318)
T ss_pred ------------cch-hhhHHHHHHHhhhhccCCcccceecCCcccc--c----cccccccccCchhccccccc---CCC
Confidence 000 00111111111 1112334444444432210 0 00112223333333222211 112
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
+.+.+++++|..+.. .++++++.+ ++..++++|...... -.+||++.+.. .
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~--------~~~~~~v~g~~~~~~----------------~~~ni~~~~~~-~ 241 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL--------PDYQFIVFGPNAADP----------------RPGNIHVRPFS-T 241 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC--------CCCeEEEEcCCcccc----------------cCCCEEEeecC-h
Confidence 345789999987655 556666655 678999998642111 14789988864 3
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+++.+++++||++|.-. --.++.||+++|+|+|.-
T Consensus 242 ~~~~~~m~~ad~vIs~~----G~~t~~Ea~~~g~P~l~i 276 (318)
T PF13528_consen 242 PDFAELMAAADLVISKG----GYTTISEALALGKPALVI 276 (318)
T ss_pred HHHHHHHHhCCEEEECC----CHHHHHHHHHcCCCEEEE
Confidence 78999999999998763 223499999999999874
No 106
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.01 E-value=3.7e-08 Score=91.68 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=130.3
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhhHHHHHH
Q 016535 54 LWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSW 133 (388)
Q Consensus 54 ~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (388)
...++++|.+.| |+|..+++..... .+.....+ ..+..++...+-....+..+......+.......
T Consensus 18 ala~a~~l~~~g--~~v~~vg~~~~~e-----~~l~~~~g------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
T PRK12446 18 NLAIIPYLKEDN--WDISYIGSHQGIE-----KTIIEKEN------IPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAY 84 (352)
T ss_pred HHHHHHHHHhCC--CEEEEEECCCccc-----cccCcccC------CcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 367889999988 8888887664211 11111111 1222222111100001111222233344455566
Q ss_pred HHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHH
Q 016535 134 EALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTF 210 (388)
Q Consensus 134 ~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
+++++.+||+|+.+.++. .+| .+++.++|+++ |...... + .
T Consensus 85 ~i~~~~kPdvvi~~Ggy~-s~p~~~aa~~~~~p~~i--~e~n~~~-------------------------g----~---- 128 (352)
T PRK12446 85 VRIRKLKPDVIFSKGGFV-SVPVVIGGWLNRVPVLL--HESDMTP-------------------------G----L---- 128 (352)
T ss_pred HHHHhcCCCEEEecCchh-hHHHHHHHHHcCCCEEE--ECCCCCc-------------------------c----H----
Confidence 678999999999887755 333 55688999865 4322100 0 0
Q ss_pred HHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCC-C-----CCCCCCcEEEEE-cccCCCCC
Q 016535 211 FSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP-L-----ERSTEYPAIISV-AQFRPEKA 283 (388)
Q Consensus 211 ~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~-~-----~~~~~~~~il~v-grl~~~Kg 283 (388)
..+...+.++.+.+.-+...+ .++ .+++.+..||+..+...... . ...+++..++.+ |..+ -+.
T Consensus 129 ---~nr~~~~~a~~v~~~f~~~~~----~~~-~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~G-a~~ 199 (352)
T PRK12446 129 ---ANKIALRFASKIFVTFEEAAK----HLP-KEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLG-AKK 199 (352)
T ss_pred ---HHHHHHHhhCEEEEEccchhh----hCC-CCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccc-hHH
Confidence 122334457777765433322 223 35778889998755432111 0 111233445544 5444 333
Q ss_pred hHH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEc
Q 016535 284 HPL-QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (388)
Q Consensus 284 ~~~-ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~p 362 (388)
+.. +.+++..+. .++++++.-+. + + +.+..++. +++...+++ .+++.++|+.||++|.-
T Consensus 200 in~~~~~~l~~l~-------~~~~vv~~~G~----~-~----~~~~~~~~---~~~~~~~f~-~~~m~~~~~~adlvIsr 259 (352)
T PRK12446 200 INETVREALPELL-------LKYQIVHLCGK----G-N----LDDSLQNK---EGYRQFEYV-HGELPDILAITDFVISR 259 (352)
T ss_pred HHHHHHHHHHhhc-------cCcEEEEEeCC----c-h----HHHHHhhc---CCcEEecch-hhhHHHHHHhCCEEEEC
Confidence 432 233343331 24655554321 1 1 11111111 234445664 36899999999988875
Q ss_pred CCCCCCChHHHHHHHhCCceEee
Q 016535 363 MIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 363 s~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+-+.++.|++++|+|.|..
T Consensus 260 ----~G~~t~~E~~~~g~P~I~i 278 (352)
T PRK12446 260 ----AGSNAIFEFLTLQKPMLLI 278 (352)
T ss_pred ----CChhHHHHHHHcCCCEEEE
Confidence 4577899999999999864
No 107
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.00 E-value=1.9e-08 Score=83.15 Aligned_cols=174 Identities=14% Similarity=0.037 Sum_probs=103.4
Q ss_pred eEEEec-c-ccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEecccccccc
Q 016535 36 SVAFFH-P-NTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (388)
Q Consensus 36 ~I~~~~-p-~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (388)
+|+++- - .....||-|+.+.+|+..|+++| ++++|+|.....+.. .....+++.++++..
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g--~~v~Vyc~~~~~~~~-----------~~~y~gv~l~~i~~~----- 64 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKG--IDVTVYCRSDYYPYK-----------EFEYNGVRLVYIPAP----- 64 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC--ceEEEEEccCCCCCC-----------CcccCCeEEEEeCCC-----
Confidence 456552 1 12234799999999999999999 889999876532111 112233344444321
Q ss_pred CCCCceehhhhhhhHHHHHHHHHhh--cCCcEEEecCC--cccccchhhh---cCCeEEEEEeccccchhhhhhhhcCCc
Q 016535 114 STYPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSG--YAFTYPLARI---FGCRVICYTHYPTISLDMISRVREGSS 186 (388)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~Div~~~~~--~~~~~~~~~~---~~~~~i~~~h~p~~~~~~~~~~~~~~~ 186 (388)
....+..+...+..+..+.....+ .+.|+++.... -++..++.++ .+.++++..|..+. .|
T Consensus 65 -~~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEW---------kR-- 132 (185)
T PF09314_consen 65 -KNGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEW---------KR-- 132 (185)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchh---------hh--
Confidence 111111222222222222222222 35677643322 1333444442 35688887776542 11
Q ss_pred cccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCC
Q 016535 187 MYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD 254 (388)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd 254 (388)
..+....++.+.+-|+.+.+.+|.+|+.|+.+++++++.|+ ..++++|++|.|
T Consensus 133 --------------~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~-~~~s~~IaYGad 185 (185)
T PF09314_consen 133 --------------AKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYIKERYG-RKKSTFIAYGAD 185 (185)
T ss_pred --------------hhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC-CCCcEEecCCCC
Confidence 33334555566667999999999999999999999999997 468889999976
No 108
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.97 E-value=9.2e-09 Score=97.31 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=139.5
Q ss_pred cCC-cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 139 FTP-LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 139 ~~~-Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.++ |+|..+.-+...+| ..+ ....++.+++|.|..+.+.+..+..+ ..+
T Consensus 121 ~~~~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r-----------------------~ei---- 173 (474)
T PRK10117 121 LKDDDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPH-----------------------DEL---- 173 (474)
T ss_pred cCCCCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCCh-----------------------HHH----
Confidence 455 57654443334445 333 34578999999999877766543311 011
Q ss_pred HHHHhccCCEEEECChhHHHHHHHH-----------------hCCCCceEEEcCCCCCCCCccCCCC---C--------C
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKL-----------------WGIPDRIKRVYPPCDTSGLQVLPLE---R--------S 266 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~-----------------~~~~~~~~vi~ngvd~~~~~~~~~~---~--------~ 266 (388)
-..+-.+|.|-..+..-++++.+. ++...++.+.|-|+|++.+...-.. . -
T Consensus 174 -l~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~ 252 (474)
T PRK10117 174 -LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAEL 252 (474)
T ss_pred -HHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHc
Confidence 111234566666666555555431 1112346677889997765432110 0 0
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccH----HHHHHHHHHHHh----cCCCC--
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDE----ERLQSLKDKSIE----LKVDG-- 336 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~----~~~~~l~~~~~~----~~l~~-- 336 (388)
.+...|+-+.|++.-||+..=++|++.+.++++....++.|+-+... .+++. ++..++++.+.+ .|-.+
T Consensus 253 ~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~p-sR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~ 331 (474)
T PRK10117 253 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPT-SRGDVQAYQDIRHQLETEAGRINGKYGQLGWT 331 (474)
T ss_pred CCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCC-CCCccHHHHHHHHHHHHHHHHHHhccCCCCce
Confidence 34578999999999999999999999999998887788999988753 33332 233444444443 22211
Q ss_pred cEEE-ccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCC
Q 016535 337 NVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA 380 (388)
Q Consensus 337 ~V~~-~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~ 380 (388)
-|.+ ...++++++.++|+.||+++.+|..+|+.++..|+.+|-.
T Consensus 332 Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~ 376 (474)
T PRK10117 332 PLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQD 376 (474)
T ss_pred eEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeec
Confidence 1444 4778999999999999999999999999999999999965
No 109
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.95 E-value=1e-07 Score=95.66 Aligned_cols=117 Identities=18% Similarity=0.139 Sum_probs=95.0
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc--cHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS--DEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~--~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
..++++.|+..+||.++++..+..+.+-..+...+++++++|.+.+.. .+++.+.+.+.+++...+++|.|+...+.+
T Consensus 479 ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~ 558 (778)
T cd04299 479 LTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMA 558 (778)
T ss_pred cEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHH
Confidence 479999999999999999999888865221101369999999984432 245667778888766777899999888777
Q ss_pred HHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 348 DLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
--..+++.||+.+.||. .|+.|++-+-||..|.+-+++-
T Consensus 559 lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvl 599 (778)
T cd04299 559 LARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVL 599 (778)
T ss_pred HHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecc
Confidence 77779999999999998 9999999999999999988763
No 110
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.92 E-value=3e-08 Score=94.95 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=116.9
Q ss_pred cCC-cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHH
Q 016535 139 FTP-LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM 214 (388)
Q Consensus 139 ~~~-Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.++ |+|..+.-+.+.+| +.+ ....++.+++|.|....+.+..+..+ ..
T Consensus 139 ~~~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r-----------------------~e----- 190 (474)
T PF00982_consen 139 YRPGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWR-----------------------EE----- 190 (474)
T ss_dssp --TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTSTTH-----------------------HH-----
T ss_pred CcCCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCCcH-----------------------HH-----
Confidence 445 46644433344445 333 45788999999998777765432210 01
Q ss_pred HHHHhccCCEEEECChhHHHHHHH----HhCC--------------CCceEEEcCCCCCCCCccCCC--CC---------
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEK----LWGI--------------PDRIKRVYPPCDTSGLQVLPL--ER--------- 265 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~----~~~~--------------~~~~~vi~ngvd~~~~~~~~~--~~--------- 265 (388)
.-..+-.+|.|-..+..-+++|.+ ..+. ...+.+.|-|+|++.+..... +.
T Consensus 191 iL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~ 270 (474)
T PF00982_consen 191 ILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELRE 270 (474)
T ss_dssp HHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHH
T ss_pred HHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHH
Confidence 122335678888888888777643 2222 123667788888765542110 00
Q ss_pred -CCC-CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccH---HHHHHHHHHHHh----cCCC-
Q 016535 266 -STE-YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDE---ERLQSLKDKSIE----LKVD- 335 (388)
Q Consensus 266 -~~~-~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~---~~~~~l~~~~~~----~~l~- 335 (388)
-.+ ...|+-+.|++.-||+..=+.|++++.++++....++.|+-++........ ++.+++.+++.+ +|-.
T Consensus 271 ~~~~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~ 350 (474)
T PF00982_consen 271 KFKGKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPD 350 (474)
T ss_dssp HTTT-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTT
T ss_pred hcCCCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCC
Confidence 034 388999999999999999999999999998777778999988874333222 244444444442 3322
Q ss_pred --CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc
Q 016535 336 --GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI 381 (388)
Q Consensus 336 --~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P 381 (388)
+-+.+.+.++.+++.++|+.||+++.+|..+|+.++..|+.+|...
T Consensus 351 ~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~ 398 (474)
T PF00982_consen 351 WTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD 398 (474)
T ss_dssp B-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T
T ss_pred ceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC
Confidence 2244557799999999999999999999999999999999999765
No 111
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=2e-07 Score=87.96 Aligned_cols=210 Identities=16% Similarity=0.075 Sum_probs=142.4
Q ss_pred cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHH
Q 016535 142 LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLV 218 (388)
Q Consensus 142 Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (388)
|+|..+.-+.+.+| ..+ ....++.+++|.|..+++++.-+..+ ..+ -..
T Consensus 149 DiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r-----------------------~eI-----l~g 200 (486)
T COG0380 149 DIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWR-----------------------EEI-----LEG 200 (486)
T ss_pred CEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchH-----------------------HHH-----HHH
Confidence 67754443344455 443 34578899999999877776532211 111 122
Q ss_pred hccCCEEEECChhHHHHHHHH----h--------------CCCCceEEEcCCCCCCCCccCCCCCC-------------C
Q 016535 219 GSCADLAMVNSSWTQSHIEKL----W--------------GIPDRIKRVYPPCDTSGLQVLPLERS-------------T 267 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~----~--------------~~~~~~~vi~ngvd~~~~~~~~~~~~-------------~ 267 (388)
+-.+|.|-.+++.-++.|... . +...++...|-|+|+..+........ .
T Consensus 201 ll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~ 280 (486)
T COG0380 201 LLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGR 280 (486)
T ss_pred hhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcC
Confidence 345677777777777665431 1 11245667788999876654221111 3
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHH---HHHHHHHHHh-------cCCCCc
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEER---LQSLKDKSIE-------LKVDGN 337 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~---~~~l~~~~~~-------~~l~~~ 337 (388)
+...++.+-|++.-||+..=+.|++++...++....++.++-++.....+-.+| ..++.+.+.+ .+..+-
T Consensus 281 ~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv 360 (486)
T COG0380 281 NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPV 360 (486)
T ss_pred CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCccee
Confidence 368899999999999999999999999999877778899999998755544443 3333333332 222233
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhC
Q 016535 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG 379 (388)
Q Consensus 338 V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G 379 (388)
..+.-.++.+++.++|+.||+++.+|..||+.++..|+.+|-
T Consensus 361 ~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q 402 (486)
T COG0380 361 HYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQ 402 (486)
T ss_pred EEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhh
Confidence 344567899999999999999999999999999999999874
No 112
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.77 E-value=1.9e-07 Score=95.57 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=141.1
Q ss_pred cCC--cEEEecCCcccccc-hhh--hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHH
Q 016535 139 FTP--LYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSW 213 (388)
Q Consensus 139 ~~~--Div~~~~~~~~~~~-~~~--~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (388)
.++ |+|+.+.-+...+| +.+ ....++.+++|.|..+.+++..+.-+ . .
T Consensus 198 ~~~~~d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r-------------------~----e---- 250 (854)
T PLN02205 198 INPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIR-------------------E----E---- 250 (854)
T ss_pred hCCCCCEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcH-------------------H----H----
Confidence 355 67754444344455 443 45678899999999877765532211 0 1
Q ss_pred HHHHHhccCCEEEECChhHHHHHHH----Hh----------------CCCCceEEEcCCCCCCCCccCCCCC--------
Q 016535 214 MYGLVGSCADLAMVNSSWTQSHIEK----LW----------------GIPDRIKRVYPPCDTSGLQVLPLER-------- 265 (388)
Q Consensus 214 ~~~~~~~~a~~ii~~S~~~~~~l~~----~~----------------~~~~~~~vi~ngvd~~~~~~~~~~~-------- 265 (388)
.-..+-.+|.|=..+..-+++|.+ .. +....+.+.|-|+|+..+.......
T Consensus 251 -iL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~ 329 (854)
T PLN02205 251 -LLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKE 329 (854)
T ss_pred -HHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHH
Confidence 112224567777776666666544 11 1123466788899877654321100
Q ss_pred ---C---CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcc---HHHHHHHHHHHHh----c
Q 016535 266 ---S---TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD---EERLQSLKDKSIE----L 332 (388)
Q Consensus 266 ---~---~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~---~~~~~~l~~~~~~----~ 332 (388)
. ++...++-+.|++.-||+..=+.|++++.++++....++.|+.+....-.+. .++..++.+.+.+ +
T Consensus 330 l~~~~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~f 409 (854)
T PLN02205 330 LIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETF 409 (854)
T ss_pred HHHHhccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhc
Confidence 0 2467899999999999999999999999999877677788888875432211 2233344444443 2
Q ss_pred CCC--CcEEEc-cCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCC
Q 016535 333 KVD--GNVEFY-KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA 380 (388)
Q Consensus 333 ~l~--~~V~~~-g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~ 380 (388)
|-. .-|+++ ..++.+++.++|+.||+++.++..+|+.++..|+.+|..
T Consensus 410 g~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~ 460 (854)
T PLN02205 410 GKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQ 460 (854)
T ss_pred CCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEcc
Confidence 221 125554 778999999999999999999999999999999999854
No 113
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.59 E-value=1.8e-05 Score=72.97 Aligned_cols=47 Identities=19% Similarity=0.068 Sum_probs=39.2
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
++|+.+.++.+ +++.++|..||++|.-+-. .++.||+++|+|+|...
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~~G~----~t~~Ea~~~g~P~l~ip 274 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITHGGF----SLISEALSLGKPLIVIP 274 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEECCCh----HHHHHHHHcCCCEEEEc
Confidence 47899999876 6899999999999987532 36899999999999753
No 114
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.45 E-value=9.9e-06 Score=75.14 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=94.9
Q ss_pred ccCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCCCccC------CCCCCCCCcEEEEEcc-cCC-CCChHHHHHH
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVL------PLERSTEYPAIISVAQ-FRP-EKAHPLQLEA 290 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~~~~~------~~~~~~~~~~il~vgr-l~~-~Kg~~~ll~a 290 (388)
+..|.+++.=+...+.+++. + .++..+.||. |....... ..-...++...+..|. -.. .+.++.++++
T Consensus 132 ~~~D~ll~ifPFE~~~y~~~-g--~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~EI~rllP~~l~a 208 (373)
T PF02684_consen 132 KYVDHLLVIFPFEPEFYKKH-G--VPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKSEIKRLLPIFLEA 208 (373)
T ss_pred HHHhheeECCcccHHHHhcc-C--CCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHHHHHH
Confidence 44799999999998888775 3 3677888886 32111110 0001123344555554 333 5666899999
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCCh
Q 016535 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGI 370 (388)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~ 370 (388)
++.+++++ |++++++... +....+.+.+..++.+....+... .++-.+.++.||+.+..| |.
T Consensus 209 a~~l~~~~----p~l~fvvp~a-----~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~m~~ad~al~~S-----GT 270 (373)
T PF02684_consen 209 AKLLKKQR----PDLQFVVPVA-----PEVHEELIEEILAEYPPDVSIVII----EGESYDAMAAADAALAAS-----GT 270 (373)
T ss_pred HHHHHHhC----CCeEEEEecC-----CHHHHHHHHHHHHhhCCCCeEEEc----CCchHHHHHhCcchhhcC-----CH
Confidence 99999886 8999998875 333333455555554443233332 246677899999888765 88
Q ss_pred HHHHHHHhCCceEee
Q 016535 371 SVVEYMAAGAIPIGK 385 (388)
Q Consensus 371 ~vlEAma~G~PVI~~ 385 (388)
+.+|++.+|+|.|..
T Consensus 271 aTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 271 ATLEAALLGVPMVVA 285 (373)
T ss_pred HHHHHHHhCCCEEEE
Confidence 999999999998864
No 115
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.39 E-value=0.0001 Score=67.50 Aligned_cols=260 Identities=13% Similarity=0.098 Sum_probs=138.0
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
|+|++=.-.. ..-.+...++++|.++| |+|.+.+.+. + ...+..+.++++. ..+...+
T Consensus 1 MkIwiDi~~p----~hvhfFk~~I~eL~~~G--heV~it~R~~----~-~~~~LL~~yg~~y------~~iG~~g----- 58 (335)
T PF04007_consen 1 MKIWIDITHP----AHVHFFKNIIRELEKRG--HEVLITARDK----D-ETEELLDLYGIDY------IVIGKHG----- 58 (335)
T ss_pred CeEEEECCCc----hHHHHHHHHHHHHHhCC--CEEEEEEecc----c-hHHHHHHHcCCCe------EEEcCCC-----
Confidence 5666543222 34466788999999999 8888877664 2 2233344444422 2222110
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccc
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
......+...........+.+.+.+||+++...+ +....+++..++|.+.+..++....
T Consensus 59 -~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s-~~a~~va~~lgiP~I~f~D~e~a~~------------------- 117 (335)
T PF04007_consen 59 -DSLYGKLLESIERQYKLLKLIKKFKPDVAISFGS-PEAARVAFGLGIPSIVFNDTEHAIA------------------- 117 (335)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCc-HHHHHHHHHhCCCeEEEecCchhhc-------------------
Confidence 0011112222222333445567789999886544 2222277789999999887643100
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCC----CCccCCC-----CC
Q 016535 195 AQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS----GLQVLPL-----ER 265 (388)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~----~~~~~~~-----~~ 265 (388)
..+.....+|.+++.+-.-.+.+.+. +.. +...-+||+++. .|++.+. ..
T Consensus 118 -------------------~~~Lt~Pla~~i~~P~~~~~~~~~~~-G~~-~~i~~y~G~~E~ayl~~F~Pd~~vl~~lg~ 176 (335)
T PF04007_consen 118 -------------------QNRLTLPLADVIITPEAIPKEFLKRF-GAK-NQIRTYNGYKELAYLHPFKPDPEVLKELGL 176 (335)
T ss_pred -------------------cceeehhcCCeeECCcccCHHHHHhc-CCc-CCEEEECCeeeEEeecCCCCChhHHHHcCC
Confidence 12233445889988876555555444 432 222338888752 2443211 11
Q ss_pred CCCCcEEEEEcccCC-----CCChHH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEE
Q 016535 266 STEYPAIISVAQFRP-----EKAHPL-QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339 (388)
Q Consensus 266 ~~~~~~il~vgrl~~-----~Kg~~~-ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~ 339 (388)
++..+++. |..+ .+|-.. +-+.++.+.+.. +. ++++-...++ .+..++.+ +.
T Consensus 177 -~~~~yIvv--R~~~~~A~y~~~~~~i~~~ii~~L~~~~-----~~-vV~ipr~~~~---------~~~~~~~~----~~ 234 (335)
T PF04007_consen 177 -DDEPYIVV--RPEAWKASYDNGKKSILPEIIEELEKYG-----RN-VVIIPRYEDQ---------RELFEKYG----VI 234 (335)
T ss_pred -CCCCEEEE--EeccccCeeecCccchHHHHHHHHHhhC-----ce-EEEecCCcch---------hhHHhccC----cc
Confidence 22233331 2222 223222 335666665552 33 5555543211 12223321 44
Q ss_pred EccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 340 ~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+.... -+..+++..||++|-- .|.-..||...|+|.|.+.+
T Consensus 235 i~~~~--vd~~~Ll~~a~l~Ig~-----ggTMa~EAA~LGtPaIs~~~ 275 (335)
T PF04007_consen 235 IPPEP--VDGLDLLYYADLVIGG-----GGTMAREAALLGTPAISCFP 275 (335)
T ss_pred ccCCC--CCHHHHHHhcCEEEeC-----CcHHHHHHHHhCCCEEEecC
Confidence 43322 2455799999998864 35667999999999998754
No 116
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.37 E-value=0.00018 Score=67.44 Aligned_cols=210 Identities=14% Similarity=0.046 Sum_probs=112.3
Q ss_pred HHHHHHHhhcCCcEEEecCCcccccc---hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhH
Q 016535 130 YLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (388)
Q Consensus 130 ~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
....+.+.+.+||+++.......++. .+...++|++ ++|.-..+.+. ....
T Consensus 83 ~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~-HveaG~rs~~~-------------------------~eE~ 136 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIA-HIHGGEVTEGA-------------------------IDES 136 (365)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEE-EEECCccCCCC-------------------------chHH
Confidence 33445678889998865643222332 4457788876 34432111000 0011
Q ss_pred HHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCC-CCCCCC---ccC-----CCCCC-CCCcEEEEEc
Q 016535 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP-CDTSGL---QVL-----PLERS-TEYPAIISVA 276 (388)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ng-vd~~~~---~~~-----~~~~~-~~~~~il~vg 276 (388)
.++. .-+.++..++.++..++.+.+.+-.+.++.++.|. +|.-.. ... ...-. .++..++..-
T Consensus 137 ~r~~-------i~~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~H 209 (365)
T TIGR03568 137 IRHA-------ITKLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFH 209 (365)
T ss_pred HHHH-------HHHHHhhccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeC
Confidence 1222 22346777888888888887654335677777664 442111 000 00001 1234444554
Q ss_pred ccC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHH
Q 016535 277 QFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG 354 (388)
Q Consensus 277 rl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~ 354 (388)
+-. .....+.+-+.++.+.+.. .++ +++....+..+....+.+++...+ .+++.+.+.++..++..+++
T Consensus 210 p~~~~~~~~~~~l~~li~~L~~~~----~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 210 PVTLEKESAEEQIKELLKALDELN----KNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCcccccCchHHHHHHHHHHHHhc----cCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHH
Confidence 432 3333344445555554331 244 334222111133333444444321 36899999999999999999
Q ss_pred hCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 355 GAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 355 ~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.|+++|--|. | .+.||.++|+|+|+-.
T Consensus 281 ~a~~vitdSS----g-gi~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 281 NADAVIGNSS----S-GIIEAPSFGVPTINIG 307 (365)
T ss_pred hCCEEEEcCh----h-HHHhhhhcCCCEEeec
Confidence 9999884332 2 3489999999999643
No 117
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.35 E-value=6.9e-05 Score=71.43 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=57.2
Q ss_pred CCCcEEEEEcccCCC---CChHHHHHHHHHHHHHhcCCCCCcEEE-EEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 016535 267 TEYPAIISVAQFRPE---KAHPLQLEAFSVALRKLDADLPRPRLQ-FVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (388)
Q Consensus 267 ~~~~~il~vgrl~~~---Kg~~~ll~a~~~l~~~~~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g 342 (388)
.++.+++..|..... +-...++++++.+ +.+++ .+|..... . ...++||.+.+
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---------~~~~i~~~g~~~~~-------~-------~~~~~~v~~~~ 294 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL---------GQRAILSLGWGGLG-------A-------EDLPDNVRVVD 294 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc---------CCeEEEEccCcccc-------c-------cCCCCceEEeC
Confidence 345677788887542 2333444444433 44544 44533211 1 23568999999
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++|.. +++..||++|+- +-..++.||+++|+|+|..
T Consensus 295 ~~p~~---~ll~~~d~~I~h----gG~~t~~eal~~GvP~v~~ 330 (401)
T cd03784 295 FVPHD---WLLPRCAAVVHH----GGAGTTAAALRAGVPQLVV 330 (401)
T ss_pred CCCHH---HHhhhhheeeec----CCchhHHHHHHcCCCEEee
Confidence 98754 468889999943 3357899999999999875
No 118
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.29 E-value=0.00022 Score=63.26 Aligned_cols=170 Identities=13% Similarity=0.165 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHhccCCEEEECChhHHHHHHH-HhCCCCceEEEcCCCCC-CCCccCCCCCCCCCcEEEEEcccC-CCC
Q 016535 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEK-LWGIPDRIKRVYPPCDT-SGLQVLPLERSTEYPAIISVAQFR-PEK 282 (388)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~-~~~~~~~~~vi~ngvd~-~~~~~~~~~~~~~~~~il~vgrl~-~~K 282 (388)
+..+++..+.+.+.++...+++ .......+.+ .++.+.+. ++.|... +..........++...-+.+|+-+ +..
T Consensus 83 lk~rlfy~lRR~aq~rvg~v~a-trGD~~~~a~~~~~v~~~l--lyfpt~m~~~l~~~~~~~~~~~~~tIlvGNSgd~SN 159 (322)
T PRK02797 83 LKFRLFYPLRRLAQKRVGHVFA-TRGDLSYFAQRHPKVPGSL--LYFPTRMDPSLNTMANDRQRAGKMTILVGNSGDRSN 159 (322)
T ss_pred hhHHHHHHHHHHHHhhcCeEEE-ecchHHHHHHhcCCCCccE--EecCCcchhhhccccccccCCCceEEEEeCCCCCcc
Confidence 3445666678888999999999 5555566544 44444444 3333221 111111111112234555667755 567
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEE
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~l~~~~~~adv~v~ 361 (388)
++..+++++.+... .++++++-=+.+.. +.+|.+++++.++++--.+++..+ ..+|.+|..++++.||+.++
T Consensus 160 ~Hie~L~~l~~~~~------~~v~ii~PlsYp~g-n~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f 232 (322)
T PRK02797 160 RHIEALRALHQQFG------DNVKIIVPMGYPAN-NQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYF 232 (322)
T ss_pred cHHHHHHHHHHHhC------CCeEEEEECCcCCC-CHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEE
Confidence 77777777766633 48888887665433 788999999999998765788775 88899999999999998887
Q ss_pred cC-CCCCCChHHHHHHHhCCceEeeC
Q 016535 362 SM-IDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 362 ps-~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
-- +-+++|..+ -.+..|+||+-+.
T Consensus 233 ~~~RQQgiGnl~-lLi~~G~~v~l~r 257 (322)
T PRK02797 233 IFARQQGIGTLC-LLIQLGKPVVLSR 257 (322)
T ss_pred eechhhHHhHHH-HHHHCCCcEEEec
Confidence 65 557787654 4688999998764
No 119
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.21 E-value=0.00015 Score=65.12 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCC--CCCCCCccCCCCCCCCCcEEEEEcccC-CCCCh
Q 016535 208 YTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP--CDTSGLQVLPLERSTEYPAIISVAQFR-PEKAH 284 (388)
Q Consensus 208 ~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ng--vd~~~~~~~~~~~~~~~~~il~vgrl~-~~Kg~ 284 (388)
.+++..+.+.+.++...+++ .......+++.++.. ....++.| +|...... ......+...-+.+|+-+ +..++
T Consensus 124 ~rlfy~lRr~aq~rvg~V~a-t~GDl~~~~q~~~~~-~~~~lyfPt~m~~~~~~~-~~~~~~~~~ltILvGNSgd~sNnH 200 (360)
T PF07429_consen 124 FRLFYFLRRLAQKRVGHVFA-TRGDLAYFQQRYPRV-PASLLYFPTRMDPALTLS-EKNKKNKGKLTILVGNSGDPSNNH 200 (360)
T ss_pred hhHHHHHHHHHHhhcCeEEE-EcchHHHHHHHcCCC-CceEEEcCCCCchhhhcc-ccccCCCCceEEEEcCCCCCCccH
Confidence 34445567777888888876 456667777777642 22244444 44322221 111112234455666655 56667
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEEcC
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAVVGIHSM 363 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~l~~~~~~adv~v~ps 363 (388)
..+++++++.. +.++++++-=+.+.. +.+|.+++.+.++++--.+++..+ .++|.+|..++++.||+.++..
T Consensus 201 ieaL~~L~~~~------~~~~kIivPLsYg~~-n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~ 273 (360)
T PF07429_consen 201 IEALEALKQQF------GDDVKIIVPLSYGAN-NQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNH 273 (360)
T ss_pred HHHHHHHHHhc------CCCeEEEEECCCCCc-hHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEee
Confidence 77777666532 247887775544332 678999999999988555688765 7999999999999999999987
Q ss_pred C-CCCCChHHHHHHHhCCceEeeC
Q 016535 364 I-DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 364 ~-~E~~~~~vlEAma~G~PVI~~~ 386 (388)
. -+++|.. .-.+.+|+||+-+.
T Consensus 274 ~RQQgiGnI-~lLl~~G~~v~L~~ 296 (360)
T PF07429_consen 274 NRQQGIGNI-CLLLQLGKKVFLSR 296 (360)
T ss_pred chhhhHhHH-HHHHHcCCeEEEec
Confidence 5 4677754 45789999998765
No 120
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.19 E-value=1.1e-05 Score=71.26 Aligned_cols=189 Identities=12% Similarity=0.022 Sum_probs=90.2
Q ss_pred eEEEe----ccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh-----hh------ceec----
Q 016535 36 SVAFF----HPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD-----RF------GVEL---- 96 (388)
Q Consensus 36 ~I~~~----~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~-----~~------~i~~---- 96 (388)
||+++ .|....| |.+.++..|+++|+++| ++|.|+++.+ ..+..+..+ .+ .+.+
T Consensus 1 kIl~vt~E~~P~~k~G-GLgdv~~~L~kaL~~~G--~~V~Vi~P~y----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 73 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVG-GLGDVVGSLPKALAKQG--HDVRVIMPKY----GFIDEEYFQLEPVRRLSVPFGGPVPVGVWY 73 (245)
T ss_dssp EEEEE-S-BTTTB-SS-HHHHHHHHHHHHHHHTT---EEEEEEE-T----HHHHHHCTTEEEEEEES-STTCEEEEE---
T ss_pred CEEEEEcccCcccccC-cHhHHHHHHHHHHHhcC--CeEEEEEccc----hhhhhhhhcceEEEEeccccccccccccce
Confidence 45555 3555555 99999999999999999 8899998875 333332210 00 0100
Q ss_pred --------CCCCeeEEecccccccc-CCCCc-----eehhhhhhhHHHHHHHHHhh--cCCcEEEecCCcccccc-hhhh
Q 016535 97 --------LHPPKVVHLYRRKWIEE-STYPR-----FTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LARI 159 (388)
Q Consensus 97 --------~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~l~~--~~~Div~~~~~~~~~~~-~~~~ 159 (388)
.++++++.+....+..+ ..+.. .....++..........+.+ .+|||||++.+.....| +.+.
T Consensus 74 ~~~v~~~~~~~v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~ 153 (245)
T PF08323_consen 74 EVRVYRYPVDGVPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKE 153 (245)
T ss_dssp -EEEEEEEETTEEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHH
T ss_pred EEEEEEEEcCCccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhcc
Confidence 13445555444333221 12210 11111111111222333444 58999998877555555 3342
Q ss_pred -c-------CCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChh
Q 016535 160 -F-------GCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSW 231 (388)
Q Consensus 160 -~-------~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~ 231 (388)
. ++|+++++|...+.-....... ...++.. ..+...-...+....+ +.+..+..||.++++|+.
T Consensus 154 ~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~-~~~gl~~------~~~~~~~~~~~~~~in-~lk~gi~~AD~v~TVS~~ 225 (245)
T PF08323_consen 154 RYQQDPFFANIPTVFTIHNLEYQGIFPPEDL-KALGLPD------EYFQNLDEYEFYGQIN-FLKAGIVYADKVTTVSPT 225 (245)
T ss_dssp CCSS------SEEEEEESSTT---EEEGGGG-GCTT-GG------GGS-STTTTEETTEEE-HHHHHHHHSSEEEESSHH
T ss_pred ccccccccccceeEEEEcccccCCcCCHHHH-HHcCCCH------HHhccccccccccccC-HHHHHHHhcCEeeeCCHH
Confidence 2 5999999997432110000000 0000000 0000000000001111 355778899999999999
Q ss_pred HHHHHHHH
Q 016535 232 TQSHIEKL 239 (388)
Q Consensus 232 ~~~~l~~~ 239 (388)
.++++.+.
T Consensus 226 Ya~Ei~~~ 233 (245)
T PF08323_consen 226 YAREIQTP 233 (245)
T ss_dssp HHHHTTSH
T ss_pred HHHHHhCc
Confidence 99988764
No 121
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=2.8e-06 Score=77.51 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCC------------------
Q 016535 205 IVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERS------------------ 266 (388)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~------------------ 266 (388)
..|.+. .+++.+...|+...++|+-+.-+-+.... .++-.+.|||.+...|+....-++
T Consensus 238 ~IYHrY--C~ERaa~h~AhVFTTVSeITa~EAeHlLk-RKPD~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~ 314 (692)
T KOG3742|consen 238 QIYHRY--CLERAAAHTAHVFTTVSEITALEAEHLLK-RKPDVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFH 314 (692)
T ss_pred hhHHHH--HHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 444443 47899999999999999887754443332 233447899998766542111000
Q ss_pred -------CCCcEEEEEcccC-CCCChHHHHHHHHHHHHHhcCCCCCcE---EEEEeCCCCCccH------HHHHHHHHHH
Q 016535 267 -------TEYPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRPR---LQFVGSCRNKSDE------ERLQSLKDKS 329 (388)
Q Consensus 267 -------~~~~~il~vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~---l~ivG~~~~~~~~------~~~~~l~~~~ 329 (388)
.+..+++..||.+ ..||-|.+||++++|.-..+..+.+.+ |.|.-...+.-+- ...++|...+
T Consensus 315 GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv 394 (692)
T KOG3742|consen 315 GHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTV 394 (692)
T ss_pred ccccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHHHH
Confidence 4457888889998 589999999999998655433223322 2232221111010 0111111111
Q ss_pred H-------------------------------------------------------------------hcCC----CCcE
Q 016535 330 I-------------------------------------------------------------------ELKV----DGNV 338 (388)
Q Consensus 330 ~-------------------------------------------------------------------~~~l----~~~V 338 (388)
. ..++ .|+|
T Consensus 395 ~~Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRV 474 (692)
T KOG3742|consen 395 NEVKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRV 474 (692)
T ss_pred HHHHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccce
Confidence 0 0000 0333
Q ss_pred --EEccC-CC------HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 339 --EFYKN-LL------YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 339 --~~~g~-v~------~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
.|++. ++ .-|..++...|++.|+||++|++|.+..|.--+|.|-|+||-
T Consensus 475 KvifHPEFLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNl 532 (692)
T KOG3742|consen 475 KVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNL 532 (692)
T ss_pred EEEecHHHhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccc
Confidence 33321 11 236677899999999999999999999999999999999974
No 122
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.14 E-value=0.00039 Score=66.06 Aligned_cols=45 Identities=20% Similarity=0.006 Sum_probs=36.4
Q ss_pred CCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 334 VDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 334 l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+++++.+.+++++. +++..||++|+.+- ..++.||+++|+|.|+.
T Consensus 273 ~~~~v~~~~~~p~~---~ll~~~~~~I~hgG----~~t~~Eal~~G~P~v~~ 317 (392)
T TIGR01426 273 LPPNVEVRQWVPQL---EILKKADAFITHGG----MNSTMEALFNGVPMVAV 317 (392)
T ss_pred CCCCeEEeCCCCHH---HHHhhCCEEEECCC----chHHHHHHHhCCCEEec
Confidence 45789999999764 57899999997542 24789999999999984
No 123
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.11 E-value=0.001 Score=63.29 Aligned_cols=301 Identities=13% Similarity=0.075 Sum_probs=145.9
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchh---------HHHHhhhhhc-eecCCCCeeEE
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDS---------LLARAVDRFG-VELLHPPKVVH 104 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~---------~~~~~~~~~~-i~~~~~~~~~~ 104 (388)
|||++.--|...--|-|=++..++..|.++..+.+++|++..+..+..- +.-..++.++ ..... ++..
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~ 78 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVG--RVKK 78 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccch--hHHH
Confidence 5777775555433389999999999999999999999999876332210 0000011000 00000 0000
Q ss_pred eccccccccCCCCceeh--hhhh--hh-HHHHHHHHHhhcCCcEEEecCCcccc---------cc-hhhhcCCeEEEEEe
Q 016535 105 LYRRKWIEESTYPRFTM--IGQS--FG-SVYLSWEALCKFTPLYYFDTSGYAFT---------YP-LARIFGCRVICYTH 169 (388)
Q Consensus 105 ~~~~~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~l~~~~~Div~~~~~~~~~---------~~-~~~~~~~~~i~~~h 169 (388)
..++.|.+.-.+.+... +... +. ......+.+. +.|+++...|..+. +. .+++.++|++.+-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 79 VLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS--GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHH--hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 00001110000000000 0000 00 0011112222 57888766553322 11 33466777777655
Q ss_pred ccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEE
Q 016535 170 YPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRV 249 (388)
Q Consensus 170 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi 249 (388)
.... +..+..+.+.++.++++|.|.+=-+...+.+++.+-...++.+.
T Consensus 157 siGP--------------------------------f~~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~ 204 (426)
T PRK10017 157 SVGP--------------------------------FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHG 204 (426)
T ss_pred cCCC--------------------------------cCCHHHHHHHHHHHhcCCEEEEccHHHHHHHHHhCCCccceEEe
Confidence 3221 11122344577778899999998888888887663322455554
Q ss_pred cCCCCC-C--CCc--cC----CCCC-CCCCcEE-EEEcccCCC-CC-------h-HHHHHHHHHHHHHhcCCCCCcEEEE
Q 016535 250 YPPCDT-S--GLQ--VL----PLER-STEYPAI-ISVAQFRPE-KA-------H-PLQLEAFSVALRKLDADLPRPRLQF 309 (388)
Q Consensus 250 ~ngvd~-~--~~~--~~----~~~~-~~~~~~i-l~vgrl~~~-Kg-------~-~~ll~a~~~l~~~~~~~~~~~~l~i 309 (388)
+-++-. + ... +. .... ...+.++ +.+..+.+. |+ . ..+.+++..+.++ +.++++
T Consensus 205 aDpAF~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~------g~~Vv~ 278 (426)
T PRK10017 205 VDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE------GYQVIA 278 (426)
T ss_pred cChhhhCCccccccccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC------CCeEEE
Confidence 433210 0 000 00 0000 0112334 344444321 21 1 2334555555443 344444
Q ss_pred EeCC--C---CCccHHHHHHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceE
Q 016535 310 VGSC--R---NKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (388)
Q Consensus 310 vG~~--~---~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI 383 (388)
+-.. . ..+|.....++.+.. .-++++++ ....+..++..++++||++|..-.. +++-|+++|+|+|
T Consensus 279 lp~~~~~~~~~~dD~~~~~~l~~~~---~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-----a~I~a~~~gvP~i 350 (426)
T PRK10017 279 LSTCTGIDSYNKDDRMVALNLRQHV---SDPARYHVVMDELNDLEMGKILGACELTVGTRLH-----SAIISMNFGTPAI 350 (426)
T ss_pred EecccCccCCCCchHHHHHHHHHhc---ccccceeEecCCCChHHHHHHHhhCCEEEEecch-----HHHHHHHcCCCEE
Confidence 4432 1 122333334444433 32333433 4445567888999999998876554 6788999999998
Q ss_pred ee
Q 016535 384 GK 385 (388)
Q Consensus 384 ~~ 385 (388)
+-
T Consensus 351 ~i 352 (426)
T PRK10017 351 AI 352 (426)
T ss_pred Ee
Confidence 74
No 124
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=5.1e-05 Score=69.09 Aligned_cols=146 Identities=11% Similarity=0.001 Sum_probs=92.1
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCCCccCCC-------CCCCCCcEEEEEcc-cC-CCCChHHHH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPL-------ERSTEYPAIISVAQ-FR-PEKAHPLQL 288 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~~~~~~~-------~~~~~~~~il~vgr-l~-~~Kg~~~ll 288 (388)
.+..|.+++.=++..+.+.+... ..+.+.++. |...+.+... .+.+.+...+..|. -+ -.+-...++
T Consensus 134 ~~~~D~lLailPFE~~~y~k~g~---~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 134 AKYVDHLLAILPFEPAFYDKFGL---PCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred HHHhhHeeeecCCCHHHHHhcCC---CeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 35579999999999999977633 466677775 3222221110 11133455556654 22 256778889
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCC
Q 016535 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHF 368 (388)
Q Consensus 289 ~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~ 368 (388)
+|+.++++++ |+.++++--. +..+.....+..+.....-++.+. +.+-.+.+.+||+.+..|
T Consensus 211 ~a~~~l~~~~----~~~~~vlp~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~aD~al~aS----- 272 (381)
T COG0763 211 QAAQELKARY----PDLKFVLPLV-----NAKYRRIIEEALKWEVAGLSLILI----DGEKRKAFAAADAALAAS----- 272 (381)
T ss_pred HHHHHHHhhC----CCceEEEecC-----cHHHHHHHHHHhhccccCceEEec----CchHHHHHHHhhHHHHhc-----
Confidence 9999998886 8999998764 222222333332222111123322 357778999999877654
Q ss_pred ChHHHHHHHhCCceEee
Q 016535 369 GISVVEYMAAGAIPIGK 385 (388)
Q Consensus 369 ~~~vlEAma~G~PVI~~ 385 (388)
|.+.+|+|.+|+|.|.+
T Consensus 273 GT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 273 GTATLEAALAGTPMVVA 289 (381)
T ss_pred cHHHHHHHHhCCCEEEE
Confidence 88999999999998875
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.07 E-value=0.00011 Score=58.61 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhhHHH
Q 016535 51 ERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVY 130 (388)
Q Consensus 51 ~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (388)
+.++.+++++|.++| ++|.+++...+. ++... .+++.+..++.. ... ....+. ..
T Consensus 10 ~~~~~~~~~~L~~~g--~~V~ii~~~~~~------~~~~~------~~~i~~~~~~~~------~k~----~~~~~~-~~ 64 (139)
T PF13477_consen 10 STFIYNLAKELKKRG--YDVHIITPRNDY------EKYEI------IEGIKVIRLPSP------RKS----PLNYIK-YF 64 (139)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEEcCCCc------hhhhH------hCCeEEEEecCC------CCc----cHHHHH-HH
Confidence 457889999999999 888888875421 11111 122233333211 111 112222 23
Q ss_pred HHHHHHhhcCCcEEEecCCccc-ccc--hhhhcC-CeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhH
Q 016535 131 LSWEALCKFTPLYYFDTSGYAF-TYP--LARIFG-CRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (388)
Q Consensus 131 ~~~~~l~~~~~Div~~~~~~~~-~~~--~~~~~~-~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
...+.+.+.+||+||++...+. .+. +++..+ .|.+.+.|..++... . .
T Consensus 65 ~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~~~------------------------~----~ 116 (139)
T PF13477_consen 65 RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFYNS------------------------S----K 116 (139)
T ss_pred HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeeecC------------------------C----c
Confidence 4466788899999987766542 223 334566 899999986442000 0 0
Q ss_pred HHHHHHHHHHHHhccCCEEEECC
Q 016535 207 YYTFFSWMYGLVGSCADLAMVNS 229 (388)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~ii~~S 229 (388)
..+...++++++.+++|.+++.|
T Consensus 117 ~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 117 KKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred hHHHHHHHHHHHHHhCCEEEEcC
Confidence 11134457888899999999876
No 126
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.06 E-value=0.00065 Score=66.42 Aligned_cols=87 Identities=14% Similarity=-0.016 Sum_probs=56.1
Q ss_pred CcEEEEEcccCCC-----CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 269 YPAIISVAQFRPE-----KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 269 ~~~il~vgrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
..+++..|..... +-...+++|++.+ +.++++..++... . .++++||.+.++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---------~~~viw~~~~~~~-------~-------~~~p~Nv~i~~w 353 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---------PYNVLWKYDGEVE-------A-------INLPANVLTQKW 353 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---------CCeEEEEECCCcC-------c-------ccCCCceEEecC
Confidence 3666777776432 2234455555544 3566665542110 0 135689999999
Q ss_pred CCHHHHHHHH--HhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 344 LLYRDLVKLL--GGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 344 v~~~~l~~~~--~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+|+.+ ++ ..++++|.- |-..++.||+.+|+|+|+-
T Consensus 354 ~Pq~~---lL~hp~v~~fItH----GG~~s~~Eal~~GvP~v~i 390 (507)
T PHA03392 354 FPQRA---VLKHKNVKAFVTQ----GGVQSTDEAIDALVPMVGL 390 (507)
T ss_pred CCHHH---HhcCCCCCEEEec----CCcccHHHHHHcCCCEEEC
Confidence 98865 45 558888864 4456899999999999974
No 127
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.03 E-value=0.00063 Score=66.35 Aligned_cols=142 Identities=12% Similarity=0.023 Sum_probs=85.9
Q ss_pred ccCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCCCccCC------CC-CCCCCcEEEEEcc-cC-CCCChHHHHH
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLP------LE-RSTEYPAIISVAQ-FR-PEKAHPLQLE 289 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~~~~~~------~~-~~~~~~~il~vgr-l~-~~Kg~~~ll~ 289 (388)
+..|.+++.=+...+.+++. +. +++.+.||. |.....+.. .. ..+++...+..|. -. -.+..+.+++
T Consensus 360 k~vD~ll~IfPFE~~~y~~~-gv--~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~ 436 (608)
T PRK01021 360 KYLDLLLLILPFEQNLFKDS-PL--RTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQ 436 (608)
T ss_pred HHhhhheecCccCHHHHHhc-CC--CeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 44789999999999998764 43 677788876 432111110 00 1122344455553 32 2566778888
Q ss_pred HHH--HHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCC
Q 016535 290 AFS--VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEH 367 (388)
Q Consensus 290 a~~--~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~ 367 (388)
|++ .++ ++.++++... +....+.+++..++.+. ..+.+... ++-.+++++||+.+..|
T Consensus 437 aa~~~~l~-------~~l~fvvp~a-----~~~~~~~i~~~~~~~~~-~~~~ii~~---~~~~~~m~aaD~aLaaS---- 496 (608)
T PRK01021 437 AFLASSLA-------STHQLLVSSA-----NPKYDHLILEVLQQEGC-LHSHIVPS---QFRYELMRECDCALAKC---- 496 (608)
T ss_pred HHHHHHhc-------cCeEEEEecC-----chhhHHHHHHHHhhcCC-CCeEEecC---cchHHHHHhcCeeeecC----
Confidence 887 331 3677777543 22233455665554331 12343321 12368999999988876
Q ss_pred CChHHHHHHHhCCceEee
Q 016535 368 FGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 368 ~~~~vlEAma~G~PVI~~ 385 (388)
|.+.+|++.+|+|.|..
T Consensus 497 -GTaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 497 -GTIVLETALNQTPTIVT 513 (608)
T ss_pred -CHHHHHHHHhCCCEEEE
Confidence 88999999999998863
No 128
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.00 E-value=4.9e-05 Score=72.04 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=74.5
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCC
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLL 345 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~v~ 345 (388)
++.+++++..++ .|=-+..++++.++.++. |+-+|++...... . .+.+++.+++.|++ +++.|.+..+
T Consensus 283 ~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~v----P~S~L~L~~~~~~---~--~~~l~~~~~~~Gv~~~Ri~f~~~~~ 351 (468)
T PF13844_consen 283 EDAVVFGSFNNL--FKISPETLDLWARILKAV----PNSRLWLLRFPAS---G--EARLRRRFAAHGVDPDRIIFSPVAP 351 (468)
T ss_dssp SSSEEEEE-S-G--GG--HHHHHHHHHHHHHS----TTEEEEEEETSTT---H--HHHHHHHHHHTTS-GGGEEEEE---
T ss_pred CCceEEEecCcc--ccCCHHHHHHHHHHHHhC----CCcEEEEeeCCHH---H--HHHHHHHHHHcCCChhhEEEcCCCC
Confidence 444555555554 677899999999999996 8999988775421 1 25788889999995 7899999999
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++-...|+.+|++|-|..+ +-+.+.+||+.+|+|||+-
T Consensus 352 ~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl 390 (468)
T PF13844_consen 352 REEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTL 390 (468)
T ss_dssp HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB-
T ss_pred HHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEec
Confidence 89999999999999998655 4489999999999999985
No 129
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.95 E-value=0.00012 Score=68.00 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=89.3
Q ss_pred HhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCC-----Ccc-C---CC-CCCCCCcEEEEEcccCC---CCC
Q 016535 218 VGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSG-----LQV-L---PL-ERSTEYPAIISVAQFRP---EKA 283 (388)
Q Consensus 218 ~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~-----~~~-~---~~-~~~~~~~~il~vgrl~~---~Kg 283 (388)
+-+-|+.-++.++..++.+.+.+-.+.++.++.|+. |.-. ..+ . .. ....++..+++.-+... ...
T Consensus 119 i~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~ 198 (346)
T PF02350_consen 119 IDKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPER 198 (346)
T ss_dssp HHHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--
T ss_pred hhhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHH
Confidence 345599999999999999988744467888887753 3210 100 0 00 01233355555544443 244
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcC
Q 016535 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363 (388)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps 363 (388)
...+.++++.+.+. +++.+++..... ......+.+..+++ +++.+...++..+...+++.|+++|-=|
T Consensus 199 ~~~i~~~l~~L~~~-----~~~~vi~~~hn~----p~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS 266 (346)
T PF02350_consen 199 LEQILEALKALAER-----QNVPVIFPLHNN----PRGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS 266 (346)
T ss_dssp HHHHHHHHHHHHHH-----TTEEEEEE--S-----HHHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS
T ss_pred HHHHHHHHHHHHhc-----CCCcEEEEecCC----chHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC
Confidence 66788888888777 488898888642 33445666666665 3899999999999999999999876433
Q ss_pred CCCCCChHHH-HHHHhCCceEee
Q 016535 364 IDEHFGISVV-EYMAAGAIPIGK 385 (388)
Q Consensus 364 ~~E~~~~~vl-EAma~G~PVI~~ 385 (388)
| .+. ||.++|+|+|.-
T Consensus 267 -----s-GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 267 -----S-GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp -----H-HHHHHGGGGT--EEEC
T ss_pred -----c-cHHHHHHHhCCeEEEe
Confidence 4 566 999999999976
No 130
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.93 E-value=0.0003 Score=57.63 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=67.8
Q ss_pred hcCCcEEEecCCcccccchhhh-cCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHHHHHH
Q 016535 138 KFTPLYYFDTSGYAFTYPLARI-FGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (388)
Q Consensus 138 ~~~~Div~~~~~~~~~~~~~~~-~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
.+.||+|+.+++|..++.+... ..+|.+.|+-+-. ..+.. ....++.+. . +.-.....+..+....
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y-~~~g~--------d~~FDpe~p-~---~~~~~~~~r~rN~~~l 130 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYY-RASGA--------DVGFDPEFP-P---SLDDRARLRMRNAHNL 130 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEe-cCCCC--------cCCCCCCCC-C---CHHHHHHHHHHhHHHH
Confidence 3579999999998876555554 5899998875411 00000 011111111 1 1111222333344566
Q ss_pred HHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCC
Q 016535 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGL 258 (388)
Q Consensus 217 ~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~ 258 (388)
..+..+|..++.|+|+++.+...+. .++.||+-|+|++.+
T Consensus 131 ~~l~~~D~~isPT~wQ~~~fP~~~r--~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 131 LALEQADAGISPTRWQRSQFPAEFR--SKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHhCCcCcCCCHHHHHhCCHHHH--cCcEEeecccchhhc
Confidence 7778899999999999999988764 599999999998764
No 131
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.77 E-value=0.0033 Score=60.46 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=78.6
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC-CCcEEEccCCC
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVEFYKNLL 345 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~v~ 345 (388)
++.+++.....+ .|=-+..++.+..+.++. |+-.|++.--..-. + +.++..+++.|+ +++|.|..-..
T Consensus 757 ~d~vvf~~FNqL--yKidP~~l~~W~~ILk~V----PnS~LwllrfPa~g-e----~rf~ty~~~~Gl~p~riifs~va~ 825 (966)
T KOG4626|consen 757 EDAVVFCNFNQL--YKIDPSTLQMWANILKRV----PNSVLWLLRFPAVG-E----QRFRTYAEQLGLEPDRIIFSPVAA 825 (966)
T ss_pred CCeEEEeechhh--hcCCHHHHHHHHHHHHhC----CcceeEEEeccccc-h----HHHHHHHHHhCCCccceeeccccc
Confidence 444555555554 566688899999998886 78777765432111 2 489999999999 57899988888
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.+|=..-++-+|+++-+..+.| ..+-.|.+.+|+|+|+
T Consensus 826 k~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVT 863 (966)
T KOG4626|consen 826 KEEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVT 863 (966)
T ss_pred hHHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceee
Confidence 8888889999999998877655 3345677899999886
No 132
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.71 E-value=0.014 Score=52.67 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=84.2
Q ss_pred HHHHhccCCEEEECChhHHHHHHHHhCC--CCceEEEcCCCCCCCCc--cCCCCC-CCCCcEEEEEcccCCCCChHHHHH
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRIKRVYPPCDTSGLQ--VLPLER-STEYPAIISVAQFRPEKAHPLQLE 289 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~~~~--~~~~~vi~ngvd~~~~~--~~~~~~-~~~~~~il~vgrl~~~Kg~~~ll~ 289 (388)
++.+-+..|.+.+.-+-.-..+.+.|+. ..+-.+.|-|.--.... +.+... .++..+++.+|. -.-|-+++-.
T Consensus 161 ~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~~~pE~~~Ilvs~GG--G~dG~eLi~~ 238 (400)
T COG4671 161 VRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPHEAPEGFDILVSVGG--GADGAELIET 238 (400)
T ss_pred HHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCcCCCccceEEEecCC--ChhhHHHHHH
Confidence 3444455788888765555555555555 22233455554211011 111111 234466777764 3445454444
Q ss_pred HHHHHHHHhcCCCCCcE---EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCC
Q 016535 290 AFSVALRKLDADLPRPR---LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDE 366 (388)
Q Consensus 290 a~~~l~~~~~~~~~~~~---l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E 366 (388)
+++..... ++++ +++.|..- -....+++.+.+.+. ++|.+..+. +|+..+++.|+..|.-.-|
T Consensus 239 ~l~A~~~l-----~~l~~~~~ivtGP~M---P~~~r~~l~~~A~~~---p~i~I~~f~--~~~~~ll~gA~~vVSm~GY- 304 (400)
T COG4671 239 ALAAAQLL-----AGLNHKWLIVTGPFM---PEAQRQKLLASAPKR---PHISIFEFR--NDFESLLAGARLVVSMGGY- 304 (400)
T ss_pred HHHHhhhC-----CCCCcceEEEeCCCC---CHHHHHHHHHhcccC---CCeEEEEhh--hhHHHHHHhhheeeecccc-
Confidence 44333221 3333 55556432 223344555555543 789999986 8999999999988765433
Q ss_pred CCChHHHHHHHhCCceEe
Q 016535 367 HFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 367 ~~~~~vlEAma~G~PVI~ 384 (388)
+++.|-+++|||-+.
T Consensus 305 ---NTvCeILs~~k~aLi 319 (400)
T COG4671 305 ---NTVCEILSFGKPALI 319 (400)
T ss_pred ---hhhhHHHhCCCceEE
Confidence 367899999999753
No 133
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.65 E-value=0.011 Score=53.17 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=60.2
Q ss_pred EEEEcccCCCCCh--HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 272 IISVAQFRPEKAH--PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 272 il~vgrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
++..|.-.+.|.. +...+.++.+.++ +++++++|+..+ .+ ..++..+..+-...+.+.|..+-.|+
T Consensus 125 ~i~~~~~~~~k~w~~~~~~~l~~~l~~~------~~~ivl~g~~~e---~~---~~~~i~~~~~~~~~~~~~~~~~l~e~ 192 (279)
T cd03789 125 VLPPGASGPAKRWPAERFAALADRLLAR------GARVVLTGGPAE---RE---LAEEIAAALGGPRVVNLAGKTSLREL 192 (279)
T ss_pred EECCCCCCccccCCHHHHHHHHHHHHHC------CCEEEEEechhh---HH---HHHHHHHhcCCCccccCcCCCCHHHH
Confidence 3344433444443 4666666666543 688899986432 22 33443333322234556788888999
Q ss_pred HHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 350 ~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.++++.||++|.+.. | ++--|.+.|+|+|+
T Consensus 193 ~~li~~~~l~I~~Ds----g-~~HlA~a~~~p~i~ 222 (279)
T cd03789 193 AALLARADLVVTNDS----G-PMHLAAALGTPTVA 222 (279)
T ss_pred HHHHHhCCEEEeeCC----H-HHHHHHHcCCCEEE
Confidence 999999999998742 3 33444699999987
No 134
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.57 E-value=0.014 Score=54.56 Aligned_cols=101 Identities=9% Similarity=-0.053 Sum_probs=64.1
Q ss_pred CcEEEEEcccCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 269 YPAIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
+.+++..|.-.+.|... ...+.++.+.++ +.+++++|+..+. +.+ ..++.++...-+..+.+.|..+-
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~------~~~vvl~ggp~e~-e~~---~~~~i~~~~~~~~~~~l~g~~sL 253 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR------GYEVVLTSGPDKD-DLA---CVNEIAQGCQTPPVTALAGKTTF 253 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC------CCeEEEEcCCChH-HHH---HHHHHHHhcCCCccccccCCCCH
Confidence 35666767666677665 566666666432 6788888864222 122 22333332222234567898899
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.++..+++.||++|..... .+-=|.|.|+|+|+
T Consensus 254 ~el~ali~~a~l~v~nDSG-----p~HlAaA~g~P~v~ 286 (352)
T PRK10422 254 PELGALIDHAQLFIGVDSA-----PAHIAAAVNTPLIC 286 (352)
T ss_pred HHHHHHHHhCCEEEecCCH-----HHHHHHHcCCCEEE
Confidence 9999999999999976332 34446788999986
No 135
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=97.54 E-value=0.0015 Score=52.45 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=45.7
Q ss_pred HhhcCCcEEEecCCcccccc--hh-hhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHHHHHHH
Q 016535 136 LCKFTPLYYFDTSGYAFTYP--LA-RIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (388)
Q Consensus 136 l~~~~~Div~~~~~~~~~~~--~~-~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (388)
.....+|+++.++.-..+-. +. .+.++|.+.|+|.-.+....-.. .. +.. .+.
T Consensus 55 ~~~~~~dll~aTsmldLa~l~gL~p~l~~~p~ilYFHENQl~YP~~~~-~~-----------------rd~------~~~ 110 (168)
T PF12038_consen 55 PLSHSYDLLFATSMLDLATLRGLRPDLANVPKILYFHENQLAYPVSPG-QE-----------------RDF------QYG 110 (168)
T ss_pred ccccCCCEEEeeccccHHHHHhhccCCCCCCEEEEEecCcccCCCCCC-cc-----------------ccc------cHH
Confidence 34456899988866333322 33 35789999999975543322110 00 000 111
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHH
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEK 238 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~ 238 (388)
+..-...-.||.|+.||++.++.+-+
T Consensus 111 ~~ni~saLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 111 MNNIYSALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred HHHHHHHHhceeeeecchhhHHHHHH
Confidence 12223345699999999999988755
No 136
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.52 E-value=0.044 Score=48.70 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCcee-hhhhhhhH
Q 016535 50 GERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFT-MIGQSFGS 128 (388)
Q Consensus 50 ~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (388)
..++..++...|+++| ++|.+-|-+. + ...+..+.+++... .+.+ .+ ..-++ .+....-.
T Consensus 12 hvhfFk~lI~elekkG--~ev~iT~rd~----~-~v~~LLd~ygf~~~------~Igk-----~g-~~tl~~Kl~~~~eR 72 (346)
T COG1817 12 HVHFFKNLIWELEKKG--HEVLITCRDF----G-VVTELLDLYGFPYK------SIGK-----HG-GVTLKEKLLESAER 72 (346)
T ss_pred hhhHHHHHHHHHHhCC--eEEEEEEeec----C-cHHHHHHHhCCCeE------eecc-----cC-CccHHHHHHHHHHH
Confidence 4467789999999999 7777766554 2 22333444454332 1111 00 00111 11112222
Q ss_pred HHHHHHHHhhcCCcEEEecCCcccccc-hhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhHH
Q 016535 129 VYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVY 207 (388)
Q Consensus 129 ~~~~~~~l~~~~~Div~~~~~~~~~~~-~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (388)
.+...+++.+.+||+.+.-++ + ..+ +++..++|.+++...++.
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s-~-~l~rvafgLg~psIi~~D~ehA---------------------------------- 116 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHS-P-ELPRVAFGLGIPSIIFVDNEHA---------------------------------- 116 (346)
T ss_pred HHHHHHHHhhcCCceEeecCC-c-chhhHHhhcCCceEEecCChhH----------------------------------
Confidence 233445577889998876432 2 333 666788998887765441
Q ss_pred HHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCC----CCCccCCC-----CCCC-CCcEEEEEcc
Q 016535 208 YTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDT----SGLQVLPL-----ERST-EYPAIISVAQ 277 (388)
Q Consensus 208 ~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~----~~~~~~~~-----~~~~-~~~~il~vgr 277 (388)
....+.....++.+++.+..-.+.+...+..+.++ .-+||+-. ..|.+.+. .-.. ...+++=.-.
T Consensus 117 ----~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i-~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~ 191 (346)
T COG1817 117 ----EAQNKLTLPLADVIITPEAIDEEELLDFGADPNKI-SGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEP 191 (346)
T ss_pred ----HHHhhcchhhhhheecccccchHHHHHhCCCccce-ecccceeEEeecccCCCCHHHHHHcCCCCCCceEEEeecc
Confidence 00144555668999998888777777765433333 45666531 22333221 1112 2344442222
Q ss_pred -----cCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHH
Q 016535 278 -----FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL 352 (388)
Q Consensus 278 -----l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~ 352 (388)
...+++.+.+.++++.+.+. -.+++-. +. +.++..+.. +|++..... .|-.++
T Consensus 192 ~~A~y~~g~~~~~~~~~li~~l~k~--------giV~ipr-----~~----~~~eife~~---~n~i~pk~~--vD~l~L 249 (346)
T COG1817 192 WGAHYDNGDRGISVLPDLIKELKKY--------GIVLIPR-----EK----EQAEIFEGY---RNIIIPKKA--VDTLSL 249 (346)
T ss_pred ccceeeccccchhhHHHHHHHHHhC--------cEEEecC-----ch----hHHHHHhhh---ccccCCccc--ccHHHH
Confidence 22356666667777777443 3455543 22 223333332 334333322 344456
Q ss_pred HHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCCC
Q 016535 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHFK 388 (388)
Q Consensus 353 ~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~~ 388 (388)
+--|++++- +-|.-.-||...|+|.|.+..|
T Consensus 250 lyya~lvig-----~ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 250 LYYATLVIG-----AGGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred Hhhhheeec-----CCchHHHHHHHhCCceEEecCC
Confidence 666776553 2344568999999999998754
No 137
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.025 Score=52.40 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=66.8
Q ss_pred CcEEEEEc-ccCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016535 269 YPAIISVA-QFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (388)
Q Consensus 269 ~~~il~vg-rl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~ 345 (388)
+.+++..| .-+..|+.. ...+.++.+.++ ..+++++|+.. +.+ ..++..+.++ ..+.+.|..+
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~------~~~Vvl~g~~~---e~e---~~~~i~~~~~--~~~~l~~k~s 241 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAK------GYQVVLFGGPD---EEE---RAEEIAKGLP--NAVILAGKTS 241 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHC------CCEEEEecChH---HHH---HHHHHHHhcC--CccccCCCCC
Confidence 46677778 666788776 455555556554 48999999652 222 4444444442 2233889999
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
-+|+..+++.||++|.+... .+-=|.|.|+|+|+-
T Consensus 242 L~e~~~li~~a~l~I~~DSg-----~~HlAaA~~~P~I~i 276 (334)
T COG0859 242 LEELAALIAGADLVIGNDSG-----PMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHHHHhcCCEEEccCCh-----HHHHHHHcCCCEEEE
Confidence 99999999999998877432 334477889999974
No 138
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.0064 Score=53.09 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=61.0
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEE-eCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFV-GSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~iv-G~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
.++++.|.-+ .|| +..+.++.|..+ ++.+.+| |++.+ ..+.+++.++++ +++.++-.. ++
T Consensus 160 ~ilI~lGGsD-pk~--lt~kvl~~L~~~------~~nl~iV~gs~~p-----~l~~l~k~~~~~---~~i~~~~~~--~d 220 (318)
T COG3980 160 DILITLGGSD-PKN--LTLKVLAELEQK------NVNLHIVVGSSNP-----TLKNLRKRAEKY---PNINLYIDT--ND 220 (318)
T ss_pred eEEEEccCCC-hhh--hHHHHHHHhhcc------CeeEEEEecCCCc-----chhHHHHHHhhC---CCeeeEecc--hh
Confidence 4566777644 343 455777777555 3444444 43322 235777877776 688887765 89
Q ss_pred HHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc
Q 016535 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI 381 (388)
Q Consensus 349 l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P 381 (388)
+++++..||+.+.. -|.++.||...|+|
T Consensus 221 ma~LMke~d~aI~A-----aGstlyEa~~lgvP 248 (318)
T COG3980 221 MAELMKEADLAISA-----AGSTLYEALLLGVP 248 (318)
T ss_pred HHHHHHhcchheec-----cchHHHHHHHhcCC
Confidence 99999999987754 47899999999999
No 139
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.27 E-value=0.048 Score=50.79 Aligned_cols=100 Identities=9% Similarity=-0.038 Sum_probs=61.0
Q ss_pred cEEEEEcccCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 270 PAIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
.+++..|.-.+.|... ...+.++.+.++ +.+++++|+..+. +.+..+++ .+..+-+..+.+.|..+-.
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~------~~~ivl~g~p~~~-e~~~~~~i---~~~~~~~~~~~l~g~~sL~ 252 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHAR------GYEVVLTSGPDKD-ELAMVNEI---AQGCQTPRVTSLAGKLTLP 252 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhC------CCeEEEecCCCHH-HHHHHHHH---HhhCCCCcccccCCCCCHH
Confidence 4455555544555553 455555555432 5788899854211 11222233 2222222235578988999
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
|+..+++.||++|.... . .+==|.|.|+|+|+
T Consensus 253 el~ali~~a~l~Vs~DS---G--p~HlAaA~g~p~v~ 284 (344)
T TIGR02201 253 QLAALIDHARLFIGVDS---V--PMHMAAALGTPLVA 284 (344)
T ss_pred HHHHHHHhCCEEEecCC---H--HHHHHHHcCCCEEE
Confidence 99999999999998732 2 34447889999986
No 140
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.22 E-value=0.11 Score=47.94 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=60.2
Q ss_pred cEEEEEcccCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 270 PAIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
..++..|.-.+.|... ...+.+..+.++ +.++++.|+++. +.+ ..++..+. . .++.+.|..+-.
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~------~~~ivl~~G~~~--e~~---~~~~i~~~--~-~~~~l~g~~sL~ 245 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPS------GLRIKLPWGAEH--EEQ---RAKRLAEG--F-PYVEVLPKLSLE 245 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHC------CCeEEEeCCCHH--HHH---HHHHHHcc--C-CcceecCCCCHH
Confidence 4444445444556655 566666666433 567777633221 222 23333332 2 357778989999
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
|+..+++.||++|..... ++-=|.|+|+|+|+
T Consensus 246 elaali~~a~l~I~nDSG-----p~HlA~A~g~p~va 277 (322)
T PRK10964 246 QVARVLAGAKAVVSVDTG-----LSHLTAALDRPNIT 277 (322)
T ss_pred HHHHHHHhCCEEEecCCc-----HHHHHHHhCCCEEE
Confidence 999999999999977432 44557889999987
No 141
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.20 E-value=0.17 Score=46.09 Aligned_cols=152 Identities=18% Similarity=0.127 Sum_probs=87.4
Q ss_pred HHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccC----CCCCCCCCcEEEEEcccC--CCCChHH
Q 016535 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL----PLERSTEYPAIISVAQFR--PEKAHPL 286 (388)
Q Consensus 213 ~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~----~~~~~~~~~~il~vgrl~--~~Kg~~~ 286 (388)
++.+..++.+|.+.+=.+...+.+++. +. ++.+.+-++ ..-+. .....+++.+.+++.... ..+..+.
T Consensus 119 ~~~~~~l~~~~~i~vRD~~S~~~l~~~-g~--~i~~~~D~a---~~l~~~~~~~~~~~~~~~i~i~~r~~~~~~~~~~~~ 192 (298)
T TIGR03609 119 WLVRRVLRGCRAISVRDAASYRLLKRL-GI--PAELAADPV---WLLPPEPWPGGEPLPEPVIVVSLRPWPLLDVSRLLR 192 (298)
T ss_pred HHHHHHHccCCEEEEeCHHHHHHHHHh-CC--CceEeCChh---hhCCCCcccccccCCCCeEEEEECCCCcCCHHHHHH
Confidence 346667788999988777778877654 43 444444322 21111 111112223333443221 1223556
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCC
Q 016535 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDE 366 (388)
Q Consensus 287 ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E 366 (388)
+.+++..+.++. +.+++++.-... +|.+..+++.+. +.-++.+. ...+.+|+.+++++||++|-....
T Consensus 193 l~~~l~~l~~~~-----g~~v~~i~~~~~-~D~~~~~~l~~~---~~~~~~i~--~~~~~~e~~~~i~~~~~vI~~RlH- 260 (298)
T TIGR03609 193 LLRALDRLQRDT-----GAFVLFLPFQQP-QDLPLARALRDQ---LLGPAEVL--SPLDPEELLGLFASARLVIGMRLH- 260 (298)
T ss_pred HHHHHHHHHHhh-----CCeEEEEeCCcc-hhHHHHHHHHHh---cCCCcEEE--ecCCHHHHHHHHhhCCEEEEechH-
Confidence 777777776663 555555553221 244444444443 32223343 555678999999999988877665
Q ss_pred CCChHHHHHHHhCCceEeeC
Q 016535 367 HFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 367 ~~~~~vlEAma~G~PVI~~~ 386 (388)
..+-|+.+|+|+|+-.
T Consensus 261 ----~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 261 ----ALILAAAAGVPFVALS 276 (298)
T ss_pred ----HHHHHHHcCCCEEEee
Confidence 6788999999999753
No 142
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.17 E-value=0.14 Score=47.45 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=62.4
Q ss_pred CcEEEEEcc-cCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016535 269 YPAIISVAQ-FRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (388)
Q Consensus 269 ~~~il~vgr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~ 345 (388)
+.+++..|. ..+.|... ...+.++.+.++ +.+++++|+..+ .+..+++ .+..+ ...+.+.|..+
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~------~~~ivl~G~~~e---~~~~~~i---~~~~~-~~~~~l~g~~s 241 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ------GYQVVLFGSAKD---HPAGNEI---EALLP-GELRNLAGETS 241 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC------CCEEEEEEChhh---HHHHHHH---HHhCC-cccccCCCCCC
Confidence 355556655 34667666 666666666543 578899996532 2223333 22221 11234678888
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
-.++..+++.||++|..... .+==|.|.|+|+|+
T Consensus 242 L~el~ali~~a~l~I~~DSG-----p~HlAaA~~~P~i~ 275 (334)
T TIGR02195 242 LDEAVDLIALAKAVVTNDSG-----LMHVAAALNRPLVA 275 (334)
T ss_pred HHHHHHHHHhCCEEEeeCCH-----HHHHHHHcCCCEEE
Confidence 99999999999999976432 33446789999986
No 143
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.14 E-value=0.039 Score=52.53 Aligned_cols=88 Identities=18% Similarity=0.009 Sum_probs=59.1
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
+.+.+..|..... ..+++.+...... .+.++++...+.+. ..-++++|+...+++|..+
T Consensus 238 ~~vyvslGt~~~~---~~l~~~~~~a~~~-----l~~~vi~~~~~~~~-------------~~~~~p~n~~v~~~~p~~~ 296 (406)
T COG1819 238 PIVYVSLGTVGNA---VELLAIVLEALAD-----LDVRVIVSLGGARD-------------TLVNVPDNVIVADYVPQLE 296 (406)
T ss_pred CeEEEEcCCcccH---HHHHHHHHHHHhc-----CCcEEEEecccccc-------------ccccCCCceEEecCCCHHH
Confidence 3455555665433 4444444444343 37777777753110 1125778999999998765
Q ss_pred HHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 349 l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
++..||++|+. |-..++.||+.+|+|+|+
T Consensus 297 ---~l~~ad~vI~h----GG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 297 ---LLPRADAVIHH----GGAGTTSEALYAGVPLVV 325 (406)
T ss_pred ---HhhhcCEEEec----CCcchHHHHHHcCCCEEE
Confidence 89999999987 445578999999999986
No 144
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.11 E-value=0.0033 Score=58.16 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=77.4
Q ss_pred cCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccC--CCCChHHHHHHHHHHHHHh
Q 016535 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFR--PEKAHPLQLEAFSVALRKL 298 (388)
Q Consensus 221 ~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~--~~Kg~~~ll~a~~~l~~~~ 298 (388)
.+|.+.+.=+...+.+ +. +...+.||+-... ........+++.+.++.|.=. -.+.+..+++++.+++++
T Consensus 127 ~~d~vl~ifPFE~~~y----g~--~~~~VGhPl~d~~-~~~~~~~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~- 198 (347)
T PRK14089 127 YCDFLASILPFEVQFY----QS--KATYVGHPLLDEI-KEFKKDLDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGK- 198 (347)
T ss_pred HHhhhhccCCCCHHHh----CC--CCEEECCcHHHhh-hhhhhhcCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhc-
Confidence 3566666554444433 32 5557888753221 110110112234555555532 235667777888888754
Q ss_pred cCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHh
Q 016535 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAA 378 (388)
Q Consensus 299 ~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~ 378 (388)
..++++.|... . +.+++..++. ..+.+.+ +..++++.||+.+..| |.+.+|++.+
T Consensus 199 -----~~~~~i~~a~~----~---~~i~~~~~~~---~~~~~~~-----~~~~~m~~aDlal~~S-----GT~TLE~al~ 253 (347)
T PRK14089 199 -----EKILVVPSFFK----G---KDLKEIYGDI---SEFEISY-----DTHKALLEAEFAFICS-----GTATLEAALI 253 (347)
T ss_pred -----CcEEEEeCCCc----H---HHHHHHHhcC---CCcEEec-----cHHHHHHhhhHHHhcC-----cHHHHHHHHh
Confidence 36788877531 1 3555554433 2344443 4467999999888765 7788899999
Q ss_pred CCceEee
Q 016535 379 GAIPIGK 385 (388)
Q Consensus 379 G~PVI~~ 385 (388)
|+|.|..
T Consensus 254 g~P~Vv~ 260 (347)
T PRK14089 254 GTPFVLA 260 (347)
T ss_pred CCCEEEE
Confidence 9999864
No 145
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.08 E-value=0.037 Score=52.08 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=71.1
Q ss_pred HhccCCEEEECChhHHHHHHHHhCCCC-ceEEEcCCCCC--CCCccCCC---------CCCCCCcEEEEEcccCCCCCh-
Q 016535 218 VGSCADLAMVNSSWTQSHIEKLWGIPD-RIKRVYPPCDT--SGLQVLPL---------ERSTEYPAIISVAQFRPEKAH- 284 (388)
Q Consensus 218 ~~~~a~~ii~~S~~~~~~l~~~~~~~~-~~~vi~ngvd~--~~~~~~~~---------~~~~~~~~il~vgrl~~~Kg~- 284 (388)
.....|.+++.|+..++.+.+.++.+. ++ +..|..- ..+..... ....++..|+|+-.+......
T Consensus 131 ~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i--~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~ 208 (369)
T PF04464_consen 131 NYRNYDYFIVSSEFEKEIFKKAFGYPEDKI--LVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNE 208 (369)
T ss_dssp HHTT-SEEEESSHHHHHHHHHHTT--GGGE--EES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--G
T ss_pred hccCCcEEEECCHHHHHHHHHHhccCcceE--EEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccc
Confidence 446679999999999999998887643 44 4445421 11111111 111344588888655432221
Q ss_pred -----HH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCc
Q 016535 285 -----PL--QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (388)
Q Consensus 285 -----~~--ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 357 (388)
.. -++.+. ...+ .++.+++-.- .......... ....++|.+...- +++.+++..||
T Consensus 209 ~~~~~~~~~~~~~l~-~~~~-----~~~~li~k~H------p~~~~~~~~~---~~~~~~i~~~~~~--~~~~~ll~~aD 271 (369)
T PF04464_consen 209 YFKFFFSDLDFEKLN-FLLK-----NNYVLIIKPH------PNMKKKFKDF---KEDNSNIIFVSDN--EDIYDLLAAAD 271 (369)
T ss_dssp GSS----TT-HHHHH-HHHT-----TTEEEEE--S------HHHHTT-------TT-TTTEEE-TT---S-HHHHHHT-S
T ss_pred cccccccccCHHHHH-HHhC-----CCcEEEEEeC------chhhhchhhh---hccCCcEEECCCC--CCHHHHHHhcC
Confidence 22 223333 2222 5888888763 2211122211 2334678876653 58999999999
Q ss_pred EEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 358 VGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++|- .++-+++|++.+++|||-.
T Consensus 272 iLIT-----DySSi~fD~~~l~KPiify 294 (369)
T PF04464_consen 272 ILIT-----DYSSIIFDFLLLNKPIIFY 294 (369)
T ss_dssp EEEE-----SS-THHHHHGGGT--EEEE
T ss_pred EEEE-----echhHHHHHHHhCCCEEEE
Confidence 9774 3455899999999999954
No 146
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.00 E-value=0.11 Score=47.71 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=62.9
Q ss_pred CCcEEEEEcccCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016535 268 EYPAIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~ 345 (388)
++.+++..|.-.+.|... ...+.++.+.++ +.+++++|+++. +.+ ..++..+.. + +..+.|..+
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~------~~~~vl~~g~~~--e~~---~~~~i~~~~--~-~~~l~g~~s 244 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLAR------GLQIVLPWGNDA--EKQ---RAERIAEAL--P-GAVVLPKMS 244 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC------CCeEEEeCCCHH--HHH---HHHHHHhhC--C-CCeecCCCC
Confidence 346667777656777774 566666666433 577888754321 112 233333332 2 346679889
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
-.++.++++.||++|..... .+==|.|.|+|+|+
T Consensus 245 L~el~ali~~a~l~I~~DSg-----p~HlAaa~g~P~i~ 278 (319)
T TIGR02193 245 LAEVAALLAGADAVVGVDTG-----LTHLAAALDKPTVT 278 (319)
T ss_pred HHHHHHHHHcCCEEEeCCCh-----HHHHHHHcCCCEEE
Confidence 99999999999999977432 33446688999986
No 147
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.00 E-value=0.4 Score=46.85 Aligned_cols=46 Identities=15% Similarity=-0.135 Sum_probs=33.2
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+.++.+.+++|+.+ +++.+++-.+-+.. --.+++||+++|+|+|+.
T Consensus 344 ~~g~~v~~w~PQ~~---iL~h~~v~~fvtH~--G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 344 GKGLIIRGWAPQVL---ILDHQATGGFVTHC--GWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred cCCEEEecCCCHHH---HhccCccceeeecC--cchHHHHHHHcCCCeeec
Confidence 35899999998754 67777753333322 234899999999999974
No 148
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.95 E-value=0.43 Score=46.37 Aligned_cols=45 Identities=16% Similarity=-0.194 Sum_probs=31.2
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+++.+.+++|+.+ ++...++..+-+. +--.+++||+++|+|+|+-
T Consensus 323 ~~~~v~~w~pQ~~---iL~h~~v~~fvtH--gG~nS~~eal~~GvP~l~~ 367 (459)
T PLN02448 323 DMGLVVPWCDQLK---VLCHSSVGGFWTH--CGWNSTLEAVFAGVPMLTF 367 (459)
T ss_pred CCEEEeccCCHHH---HhccCccceEEec--CchhHHHHHHHcCCCEEec
Confidence 4788889998776 4556665222222 2335899999999999973
No 149
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.38 Score=44.53 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=103.4
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCC------Cc-cCC-----CCCCCCCcEEEEEcccCC-CCChH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSG------LQ-VLP-----LERSTEYPAIISVAQFRP-EKAHP 285 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~------~~-~~~-----~~~~~~~~~il~vgrl~~-~Kg~~ 285 (388)
..-|+.-++.++..++++.+.+-.++++.++.|.+-... .. ... .....++..++..-|-+- .+++.
T Consensus 143 ~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~ 222 (383)
T COG0381 143 SHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLE 222 (383)
T ss_pred HHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHH
Confidence 345788899999999999876544567999998752110 00 000 112233466677766554 39999
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHH-HhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS-IELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~-~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 364 (388)
.+++++.++.+++ +++.++.-=.-. . .+++.. +.++-.++|.++.++...+...+++.|.+.+-=|
T Consensus 223 ~i~~al~~i~~~~----~~~~viyp~H~~--~------~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS- 289 (383)
T COG0381 223 EICEALREIAEEY----PDVIVIYPVHPR--P------RVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS- 289 (383)
T ss_pred HHHHHHHHHHHhC----CCceEEEeCCCC--h------hhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-
Confidence 9999999999996 677776654321 1 333333 4556567899999999999999999996554322
Q ss_pred CCCCChHHHHHHHhCCceEeeC
Q 016535 365 DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 365 ~E~~~~~vlEAma~G~PVI~~~ 386 (388)
|-..=||-..|+||++-+
T Consensus 290 ----GgiqEEAp~lg~Pvl~lR 307 (383)
T COG0381 290 ----GGIQEEAPSLGKPVLVLR 307 (383)
T ss_pred ----CchhhhHHhcCCcEEeec
Confidence 445668999999998754
No 150
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.66 E-value=0.0018 Score=47.54 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 358 VGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+++.|+..+++++.++|+||||+|+|++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~ 30 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDS 30 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECCh
Confidence 467888889999999999999999999865
No 151
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.11 Score=47.55 Aligned_cols=146 Identities=13% Similarity=0.061 Sum_probs=87.9
Q ss_pred EEECChhH-HHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCC
Q 016535 225 AMVNSSWT-QSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLP 303 (388)
Q Consensus 225 ii~~S~~~-~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~ 303 (388)
+++.++.. ++.+.+..+ ..+...++.++|.+.+.+.+.+. ....-+.++|+..|+ .++.+=+.+..-..+. ..
T Consensus 142 v~~~g~~l~~~~yyq~~~-~~~~~~~~~a~d~~~~~~i~~da-~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl---~v 215 (373)
T COG4641 142 VLSFGGGLVANKYYQEGG-ARNCYYLPWAVDDSLFHPIPPDA-SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKL---MV 215 (373)
T ss_pred hhhccchHHHHHHHHhhc-ccceeccCccCCchhcccCCccc-cceeeeEEecCCCcc-HHHHHHHHhhccchhh---hc
Confidence 44444444 445543322 45777899999988887655333 233578999998776 2222222222222221 12
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH-HHHHHHHHhCcEEEEcCC---CCC-C--ChHHHHHH
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY-RDLVKLLGGAVVGIHSMI---DEH-F--GISVVEYM 376 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~-~~l~~~~~~adv~v~ps~---~E~-~--~~~vlEAm 376 (388)
+-++...|..- ...+... -..+++...|+.+. +.+...++..|+.+.-++ .++ + .+-+.|++
T Consensus 216 ~rr~~~~g~~y-------~~~~~~~----~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeia 284 (373)
T COG4641 216 DRRFYVLGPRY-------PDDIWGR----TWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIA 284 (373)
T ss_pred cceeeecCCcc-------chhhhcc----cccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHh
Confidence 35666777531 1122211 12357888888876 889999999998886542 233 3 67799999
Q ss_pred HhCCceEeeCC
Q 016535 377 AAGAIPIGKHF 387 (388)
Q Consensus 377 a~G~PVI~~~~ 387 (388)
+||.|-|++.+
T Consensus 285 gc~~~liT~~~ 295 (373)
T COG4641 285 GCGGFLITDYW 295 (373)
T ss_pred hcCCccccccH
Confidence 99999888754
No 152
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.51 E-value=0.72 Score=43.01 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=60.5
Q ss_pred cEEEEEccc-CCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC--Cc-EEEccC
Q 016535 270 PAIISVAQF-RPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD--GN-VEFYKN 343 (388)
Q Consensus 270 ~~il~vgrl-~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~--~~-V~~~g~ 343 (388)
.+++..|.- .+.|... ...+.++.+.+ .+++++++|+..+ .+..+++ .+..+-+ .+ +.+.|.
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~------~~~~vvl~Gg~~e---~~~~~~i---~~~~~~~~~~~~~~l~g~ 249 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLID------EGYQVVLFGSAKD---HEAGNEI---LAALNTEQQAWCRNLAGE 249 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHH------CCCeEEEEeCHHh---HHHHHHH---HHhcccccccceeeccCC
Confidence 455566553 3666655 45565555542 3678889986432 2222333 3322211 12 556788
Q ss_pred CCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.+-.++.++++.||++|..-.. .+==|.|.|+|+|+
T Consensus 250 ~sL~el~ali~~a~l~I~nDTG-----p~HlAaA~g~P~va 285 (348)
T PRK10916 250 TQLEQAVILIAACKAIVTNDSG-----LMHVAAALNRPLVA 285 (348)
T ss_pred CCHHHHHHHHHhCCEEEecCCh-----HHHHHHHhCCCEEE
Confidence 8889999999999999876332 34447788999986
No 153
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=96.18 E-value=0.15 Score=42.75 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=63.3
Q ss_pred ChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhhH
Q 016535 49 GGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGS 128 (388)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
|--+.+..|+++|.++..++.+.+-+.+. +..+.. .+.+ .+.+.+.+++. . .
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~---~~~~----~~~v~~~~~P~------D-~------------ 83 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMA---RKLL----PDRVDVQYLPL------D-F------------ 83 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHH---HGG-----GGG-SEEE---------S-S------------
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHH---HHhC----CCCeEEEEeCc------c-C------------
Confidence 67778899999999986667776666543 112211 1111 11112222221 0 0
Q ss_pred HHHHHHHHhhcCCcEEEec--CCcccccchhhhcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchhhhhhhH
Q 016535 129 VYLSWEALCKFTPLYYFDT--SGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (388)
Q Consensus 129 ~~~~~~~l~~~~~Div~~~--~~~~~~~~~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
.....+.+...+||+++.. .-|+..+..++..++|++. +.... +.....
T Consensus 84 ~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~L-vNarl----------------------------s~~s~~ 134 (186)
T PF04413_consen 84 PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVL-VNARL----------------------------SERSFR 134 (186)
T ss_dssp HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEE-EEE------------------------------------
T ss_pred HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEE-Eeeee----------------------------ccccch
Confidence 0112233566789966433 3344333344567788765 22100 000001
Q ss_pred HHHHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcC
Q 016535 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYP 251 (388)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~n 251 (388)
.++.+.++.+..++..|.|.+.|+..++.+.+.+..++++.+..|
T Consensus 135 ~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 135 RYRRFPFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGN 179 (186)
T ss_dssp ------HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---
T ss_pred hhhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCc
Confidence 122234567888899999999999999999988665567877765
No 154
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=95.95 E-value=0.0009 Score=55.28 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=34.5
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.+|.+.++. +++.++++.||+.|.- +-+.++.|++++|+|.|.
T Consensus 55 ~~v~~~~~~--~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ 97 (167)
T PF04101_consen 55 PNVKVFGFV--DNMAELMAAADLVISH----AGAGTIAEALALGKPAIV 97 (167)
T ss_dssp CCCEEECSS--SSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEE
T ss_pred CcEEEEech--hhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeec
Confidence 589999998 6799999999988764 445799999999999875
No 155
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.93 E-value=1 Score=39.28 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=61.9
Q ss_pred CCCcEEEEEcccCCCCCh--HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccC
Q 016535 267 TEYPAIISVAQFRPEKAH--PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKN 343 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~ 343 (388)
.+.++-+.||.-.+.-.. +.+.+.+..+.+.+.+ ....+++--+-...+ .++...++ +.-. -..+...
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~--~g~~~lisfSRRTp~------~~~s~l~~~l~s~-~~i~w~~ 230 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN--QGGSFLISFSRRTPD------TVKSILKNNLNSS-PGIVWNN 230 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh--CCceEEEEeecCCcH------HHHHHHHhccccC-ceeEeCC
Confidence 455778888876554333 3444444444444322 346666665443322 45555554 3322 2444433
Q ss_pred C--CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 344 L--LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 344 v--~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
- +.+-..+++++||.++.+-..=+ -.-||.+.|+||-+
T Consensus 231 ~d~g~NPY~~~La~Adyii~TaDSin---M~sEAasTgkPv~~ 270 (329)
T COG3660 231 EDTGYNPYIDMLAAADYIISTADSIN---MCSEAASTGKPVFI 270 (329)
T ss_pred CCCCCCchHHHHhhcceEEEecchhh---hhHHHhccCCCeEE
Confidence 3 34577889999999998743222 35799999999975
No 156
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.17 Score=51.38 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=97.3
Q ss_pred CceEEEcCCCCCCCCccCCCCC------------CCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 016535 244 DRIKRVYPPCDTSGLQVLPLER------------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG 311 (388)
Q Consensus 244 ~~~~vi~ngvd~~~~~~~~~~~------------~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG 311 (388)
..+..+|-|+|...+....... ..++..++.+-|++.-||...=+.|+.++..+++...+.+.++.+.
T Consensus 239 ~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~ 318 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIE 318 (732)
T ss_pred eeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEe
Confidence 4456677788876654322111 0456789999999999999999999999999987766778888887
Q ss_pred CCCCCccHHHHHHHHHHHHh--------cCC---CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhC
Q 016535 312 SCRNKSDEERLQSLKDKSIE--------LKV---DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG 379 (388)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~--------~~l---~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G 379 (388)
.+...+..+ .++++..+.. .+- ..-+.+...++..++.++|..+|+++..++.+|+.++.+|+..|.
T Consensus 319 ~~~~~~~~~-v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~ 396 (732)
T KOG1050|consen 319 NPKRTDGKE-VEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQ 396 (732)
T ss_pred cCCcccchH-HHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhh
Confidence 765443332 2233222221 111 122346688899999999999999999999999999999998874
No 157
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.58 E-value=0.15 Score=46.61 Aligned_cols=106 Identities=12% Similarity=0.010 Sum_probs=68.9
Q ss_pred CCCcEEEEEcccCCCC--ChH---HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 016535 267 TEYPAIISVAQFRPEK--AHP---LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (388)
Q Consensus 267 ~~~~~il~vgrl~~~K--g~~---~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~ 341 (388)
..+...+.+|.-...- +.+ .+++.+..+.+.. ...+.+..+-...+ +..+.|++..+. .+.+.+.
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~vttSRRTp~--~~~~~L~~~~~~---~~~~~~~ 214 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAY-----GGSLLVTTSRRTPP--EAEAALRELLKD---NPGVYIW 214 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhC-----CCeEEEEcCCCCcH--HHHHHHHHhhcC---CCceEEe
Confidence 3456677888644322 222 4666666666664 58888888754432 333444444432 3567555
Q ss_pred cCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 342 g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
..-+.+-+.++|+.||.++.+...-+ =+.||.+.|+||..-
T Consensus 215 ~~~~~nPy~~~La~ad~i~VT~DSvS---MvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 215 DGTGENPYLGFLAAADAIVVTEDSVS---MVSEAAATGKPVYVL 255 (311)
T ss_pred cCCCCCcHHHHHHhCCEEEEcCccHH---HHHHHHHcCCCEEEe
Confidence 66667779999999999998854322 267999999999764
No 158
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.24 E-value=0.6 Score=47.02 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCcEEEEEcccCCCCChHH-H---HHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHh--------cCC
Q 016535 267 TEYPAIISVAQFRPEKAHPL-Q---LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE--------LKV 334 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~-l---l~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~--------~~l 334 (388)
++....+++-|+..+|+..+ + ++-+.++++.......++++++.|...+... .-+++.+++.+ -.+
T Consensus 442 p~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~--~gK~iIk~I~~va~~in~Dp~v 519 (713)
T PF00343_consen 442 PDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDY--MGKEIIKLINNVAEVINNDPEV 519 (713)
T ss_dssp TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-H--HHHHHHHHHHHHHHHHCT-TTT
T ss_pred cchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcH--HHHHHHHHHHHHHHHHhcChhh
Confidence 44567789999999999988 3 3455556554221224588999998654422 12233333322 223
Q ss_pred CC--cEEEccCCCHHHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 335 DG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 335 ~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+ +|.|+...+-+--..++.++|+-+..|. .|..|.+-+=+|..|.+.+++-
T Consensus 520 ~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstl 575 (713)
T PF00343_consen 520 GDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTL 575 (713)
T ss_dssp CCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEES
T ss_pred ccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecc
Confidence 34 6999999988888889999999998874 7999999999999999999874
No 159
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=94.97 E-value=3.2 Score=38.79 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccC---CCC----CCCCCcEEEEEcccCCC
Q 016535 209 TFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL---PLE----RSTEYPAIISVAQFRPE 281 (388)
Q Consensus 209 ~~~~~~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~---~~~----~~~~~~~il~vgrl~~~ 281 (388)
...+|+.....+.+..+++=.+...+.++ ..+. +..... |+.+.-+. +.. ....+...+.+..+.+.
T Consensus 140 ~~s~~~~~~~~~~~s~i~vRD~~S~~llk-~~gi--~a~l~~---D~Af~L~~~~~~~~~~~~~~~~~~~~i~lr~~~~~ 213 (385)
T COG2327 140 PLSRQLLNYVLGGCSAISVRDPVSYELLK-QLGI--NARLVT---DPAFLLPASSQNATASDVEAREKTVAITLRGLHPD 213 (385)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHhHHHHH-HcCC--CeEeec---CcceecccccccccccccccccceEEEEecccCCc
Confidence 34455677778888888888888888887 4454 222222 43222110 111 11223444555555554
Q ss_pred CChHH-----HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC
Q 016535 282 KAHPL-----QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 282 Kg~~~-----ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a 356 (388)
+..+. .-+++..+.... ....++...-.+. .+|... .++.++...-.+++.+......+++-..+.++
T Consensus 214 ~t~~~~~~~~v~~~l~~~~~~~---~~~~~i~~~~~~~-s~d~~v---a~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~ 286 (385)
T COG2327 214 NTAQRSILKYVNEALDLVERQV---KALWRITLIDYGA-SDDLAV---ADAIAQLVLDSAEILVSSDEYAEELGGILAAC 286 (385)
T ss_pred hhhhHHHHHHHHHHHHHHHHhh---hcceEEEeeeccc-cchhHH---HHHHHhhcCCccceEeecchHHHHHHHHhccC
Confidence 33333 234444332221 1234444333322 223333 33333333333677776443357778899999
Q ss_pred cEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 357 VVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 357 dv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
|+.|-.-.. +++=||+.|+|+|+-
T Consensus 287 dl~Vg~R~H-----saI~al~~g~p~i~i 310 (385)
T COG2327 287 DLIVGMRLH-----SAIMALAFGVPAIAI 310 (385)
T ss_pred ceEEeehhH-----HHHHHHhcCCCeEEE
Confidence 988876554 678899999999974
No 160
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.82 E-value=0.076 Score=39.31 Aligned_cols=74 Identities=14% Similarity=-0.096 Sum_probs=52.0
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCCHHH--HHHHHHhCcEEEEcCCC---CCCChHHHHHHHh
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRD--LVKLLGGAVVGIHSMID---EHFGISVVEYMAA 378 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~---g~v~~~~--l~~~~~~adv~v~ps~~---E~~~~~vlEAma~ 378 (388)
++++|+ .......+++.++++|.. ..++ +.....+ +++.++.||++|+++.+ +.+-.+--+|-..
T Consensus 2 vliVGG-----~~~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~ 74 (97)
T PF10087_consen 2 VLIVGG-----REDRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKY 74 (97)
T ss_pred EEEEcC-----CcccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHc
Confidence 567786 233445889999998875 4444 4444444 99999999988887643 2344455788889
Q ss_pred CCceEeeCC
Q 016535 379 GAIPIGKHF 387 (388)
Q Consensus 379 G~PVI~~~~ 387 (388)
|+|++.+++
T Consensus 75 ~ip~~~~~~ 83 (97)
T PF10087_consen 75 GIPIIYSRS 83 (97)
T ss_pred CCcEEEECC
Confidence 999998873
No 161
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.49 E-value=0.71 Score=38.08 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=54.5
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccCCCCceehhhhhhh
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
||--.-+..+++.+.....+++..+++.....+.. ...+.++..... ..+...++...+.. +.++.....+.
T Consensus 8 GGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~-k~~~~~~~~~~~----~~~~~~~r~r~v~q---~~~~~~~~~l~ 79 (170)
T PF08660_consen 8 GGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRS-KAEQLEKSSSKR----HKILEIPRAREVGQ---SYLTSIFTTLR 79 (170)
T ss_pred cHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHH-HHHHHHHhcccc----ceeeccceEEEech---hhHhhHHHHHH
Confidence 36555566777888444445666666655322211 112222211110 01111111111111 12233445556
Q ss_pred HHHHHHHHHhhcCCcEEEecCCcccccc---hhhhc------CCeEEE
Q 016535 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIF------GCRVIC 166 (388)
Q Consensus 128 ~~~~~~~~l~~~~~Div~~~~~~~~~~~---~~~~~------~~~~i~ 166 (388)
.....+..+.+.+||+|+++.. ..++| ++++. ++++|+
T Consensus 80 ~~~~~~~il~r~rPdvii~nGp-g~~vp~~~~~~l~~~~~~~~~kiIy 126 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGP-GTCVPVCLAAKLLRLLGLRGSKIIY 126 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCC-ceeeHHHHHHHHHHHhhccCCcEEE
Confidence 6667777788889999998865 33455 44555 777664
No 162
>PRK14986 glycogen phosphorylase; Provisional
Probab=94.14 E-value=0.41 Score=48.89 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=84.9
Q ss_pred CCCcEEEEEcccCCCCChHH-HHHH---HHHHHHHhcCCCCCcEEEEEeCCCCCccH--HHHHHHHHHHH----hcCCCC
Q 016535 267 TEYPAIISVAQFRPEKAHPL-QLEA---FSVALRKLDADLPRPRLQFVGSCRNKSDE--ERLQSLKDKSI----ELKVDG 336 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~-ll~a---~~~l~~~~~~~~~~~~l~ivG~~~~~~~~--~~~~~l~~~~~----~~~l~~ 336 (388)
++...++++-|+..+|+..+ ++.. +.++++.......+.++++.|...+.... +..+.+-+.++ +-.+.+
T Consensus 541 p~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~ 620 (815)
T PRK14986 541 PKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGD 620 (815)
T ss_pred cccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcC
Confidence 44577889999999999999 6555 44454432111235888888887554322 23333333343 223334
Q ss_pred --cEEEccCCCHHHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 337 --NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 337 --~V~~~g~v~~~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+|.|+...+-+--..++.+||+-...|. .|..|.+-+-+|..|.+.+++-
T Consensus 621 ~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtl 674 (815)
T PRK14986 621 KLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTL 674 (815)
T ss_pred ceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeecc
Confidence 6999999887788889999999998775 7999999999999999999874
No 163
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.11 E-value=0.23 Score=50.52 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCcEEEEEcccCCCCChHH-HHHH---HHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcC--------C
Q 016535 267 TEYPAIISVAQFRPEKAHPL-QLEA---FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--------V 334 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~-ll~a---~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~--------l 334 (388)
++....+++-|+..+|++.+ ++.. +.++++.......+.++++.|...+... ..+++.+++.+.. +
T Consensus 525 p~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~--~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 525 PNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH--MAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred ccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH--HHHHHHHHHHHHHHHhccChhh
Confidence 44566788999999999999 5554 4455443111123568888888755432 2334444444333 4
Q ss_pred CC--cEEEccCCCHHHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 335 DG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 335 ~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+ +|.|+....-+--..++.+||+-..-|. .|..|.+-+-+|..|.+.+++-
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtl 658 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTL 658 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecc
Confidence 44 6999999888888889999999998775 7999999999999999999873
No 164
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.09 E-value=0.51 Score=41.46 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCCcEEEEEcccCCCCChHH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016535 267 TEYPAIISVAQFRPEKAHPL--QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~--ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v 344 (388)
.++.+++..|.-.+.|.... ..+.+..+.++ ...++++|+.. .+..+...+..+...- ..+.+.|..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~------~~~vvl~g~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKER------GYRVVLLGGPE----EQEKEIADQIAAGLQN-PVINLAGKT 172 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCC------T-EEEE--SSH----HHHHHHHHHHHTTHTT-TTEEETTTS
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhh------CceEEEEccch----HHHHHHHHHHHHhccc-ceEeecCCC
Confidence 34466777777677777655 44444444322 37888888642 1122233343333321 268888999
Q ss_pred CHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 345 ~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
+-.|+..+++.||++|.+-.. .+-=|.|.|+|+|+
T Consensus 173 ~l~e~~ali~~a~~~I~~Dtg-----~~HlA~a~~~p~v~ 207 (247)
T PF01075_consen 173 SLRELAALISRADLVIGNDTG-----PMHLAAALGTPTVA 207 (247)
T ss_dssp -HHHHHHHHHTSSEEEEESSH-----HHHHHHHTT--EEE
T ss_pred CHHHHHHHHhcCCEEEecCCh-----HHHHHHHHhCCEEE
Confidence 999999999999999987432 44557889999987
No 165
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=93.99 E-value=0.49 Score=47.76 Aligned_cols=119 Identities=19% Similarity=0.119 Sum_probs=86.6
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCccH--HHHHHHHHHHHhcCCCCcEEEccCC
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLD-ADLPRPRLQFVGSCRNKSDE--ERLQSLKDKSIELKVDGNVEFYKNL 344 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~-~~~~~~~l~ivG~~~~~~~~--~~~~~l~~~~~~~~l~~~V~~~g~v 344 (388)
+...++++-|+..+|++.+.+-=...+..... +.-|++.+++.|...+.... +....+-..++..+...+|.|+...
T Consensus 486 ~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nY 565 (750)
T COG0058 486 NALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNY 565 (750)
T ss_pred CcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCC
Confidence 46788999999999999987755555544443 22366777888876444221 2333444444444334579999998
Q ss_pred CHHHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 345 LYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 345 ~~~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+-+--..++.+||+-...|. .|..|.+-+-+|..|.+.|+|-
T Consensus 566 dvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtl 609 (750)
T COG0058 566 DVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTL 609 (750)
T ss_pred ChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeecc
Confidence 87777779999999998764 7999999999999999999874
No 166
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=93.86 E-value=4.3 Score=35.77 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=85.2
Q ss_pred HHHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCcc-CCCCCCCC--CcEEEEEccc---CCCCChHHH
Q 016535 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV-LPLERSTE--YPAIISVAQF---RPEKAHPLQ 287 (388)
Q Consensus 214 ~~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~-~~~~~~~~--~~~il~vgrl---~~~Kg~~~l 287 (388)
..+..++.++.+.+=.+...+.+.+. +.+.++.+.+-++ +... ........ ......+... ....-.+..
T Consensus 120 ~~~~~l~~~~~i~vRD~~S~~~l~~~-g~~~~~~~~~D~a---f~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (286)
T PF04230_consen 120 LLRRILSKADYISVRDEYSYELLKKL-GISGNVKLVPDPA---FLLPPSYPDEDKSKPKRNYISVSNSPSRNNEEYIEEI 195 (286)
T ss_pred HHHHHHhCCCEEEECCHHHHHHHHHc-CCCCCcEEEeCch---hhcCcccccccccccccceeeeccccchhhhhHHHHH
Confidence 45566677899888777777755543 4322555565443 2111 11010000 1122222221 123334455
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCC
Q 016535 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEH 367 (388)
Q Consensus 288 l~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~ 367 (388)
.+.+..+.++. ..+.+.........++.......... ..............+.+++.++++++|++|.....
T Consensus 196 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH-- 267 (286)
T PF04230_consen 196 AELIQRLLDKG----YKIVLLPFSPSDDDEDDDDFNEIDIK--AEKFFNVIIIDYSLSPDELLELISQADLVISMRLH-- 267 (286)
T ss_pred HHHHHHhhccc----ceeEEEEeeeccchhhHHHHHhhhhh--cccccceeEecCCCCHHHHHHHHhcCCEEEecCCH--
Confidence 56666665532 34555555544322221111111110 11222344556677789999999999999988776
Q ss_pred CChHHHHHHHhCCceEeeCC
Q 016535 368 FGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 368 ~~~~vlEAma~G~PVI~~~~ 387 (388)
..+=|+++|+|+|+-+.
T Consensus 268 ---~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 ---GAILALSLGVPVIAISY 284 (286)
T ss_pred ---HHHHHHHcCCCEEEEec
Confidence 67889999999998654
No 167
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.62 E-value=0.66 Score=47.46 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCCcEEEEEcccCCCCChHH-HHHH---HHHHHHHhcCCCCCcEEEEEeCCCCCccH--HHHHHHHHHHH----hcCCCC
Q 016535 267 TEYPAIISVAQFRPEKAHPL-QLEA---FSVALRKLDADLPRPRLQFVGSCRNKSDE--ERLQSLKDKSI----ELKVDG 336 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~-ll~a---~~~l~~~~~~~~~~~~l~ivG~~~~~~~~--~~~~~l~~~~~----~~~l~~ 336 (388)
++....+++-|+..+|++.+ ++.. +.++++.......+.++++.|...+.... +..+.+-+.++ +-.+.+
T Consensus 528 p~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~ 607 (797)
T cd04300 528 PDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGD 607 (797)
T ss_pred CCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCC
Confidence 45677889999999999999 5544 55554442111234788888876554322 12222333333 112334
Q ss_pred --cEEEccCCCHHHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 337 --NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 337 --~V~~~g~v~~~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+|.|+....-+--..++.+||+-..-|. .|..|.+-+-+|..|.+.++|-
T Consensus 608 ~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtl 661 (797)
T cd04300 608 KLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTL 661 (797)
T ss_pred ceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecc
Confidence 6999998888888889999999998775 7999999999999999999873
No 168
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.41 E-value=0.88 Score=40.69 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhc-CCCCcEEEc-cCCCHHHHHHHHHhCcEEE
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFY-KNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~V~~~-g~v~~~~l~~~~~~adv~v 360 (388)
....+++.+..+.+.. |+.++++==-..+.... .. +..++. .. +++.+. .. -++.+++..||.++
T Consensus 138 ~~~~~~~~l~~~~~~~----p~~~lvvK~HP~~~~~~----~~-~~~~~~~~~-~~~~~~~~~---~~~~~Ll~~s~~Vv 204 (269)
T PF05159_consen 138 SQADFLDMLESFAKEN----PDAKLVVKPHPDERGGN----KY-SYLEELPNL-PNVVIIDDD---VNLYELLEQSDAVV 204 (269)
T ss_pred cHhHHHHHHHHHHHHC----CCCEEEEEECchhhCCC----Ch-hHhhhhhcC-CCeEEECCC---CCHHHHHHhCCEEE
Confidence 5566777777777775 78888765432111000 00 112221 22 344444 33 47778999999777
Q ss_pred EcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 361 HSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 361 ~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.-+ +.+-+||+.+|+||++-.
T Consensus 205 tin-----StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 205 TIN-----STVGLEALLHGKPVIVFG 225 (269)
T ss_pred EEC-----CHHHHHHHHcCCceEEec
Confidence 543 448899999999999854
No 169
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=93.29 E-value=0.62 Score=44.60 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=50.2
Q ss_pred CChhhHHHHHHHHHhhc--------CC--CceEEEEecCC-CCCchhHHHHhhhhhc-eecCCCCeeEEecc-------c
Q 016535 48 GGGERVLWCAVKAIQEE--------SP--DLDCIVYTGDH-DAFPDSLLARAVDRFG-VELLHPPKVVHLYR-------R 108 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~--------g~--~~~v~v~~~~~-~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~-------~ 108 (388)
||.-.++.+++++|.+. |. ..+|.++|.-- +.... ++.+... +.-.++..+++++- +
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t----~~~q~le~~~gt~~a~IlRvPF~~~~gi~~ 371 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGT----TCNQRLEKVSGTENARILRVPFGPEKGILR 371 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCG----GGTSSEEEETTESSEEEEEE-ESESTEEE-
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCC----CccccccccCCCCCcEEEEecCCCCcchhh
Confidence 78889999999999764 32 23566766532 11111 1111110 10112233444332 2
Q ss_pred ccccc-CCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEEEEec
Q 016535 109 KWIEE-STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHY 170 (388)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~ 170 (388)
.|+.+ ..||++.-+..-. ......-.+.+||+||.+.+...... ++...++|....-|.
T Consensus 372 kwisrf~lWPyLe~fa~d~---~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 372 KWISRFDLWPYLEEFADDA---EREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp S---GGG-GGGHHHHHHHH---HHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred hccchhhchhhHHHHHHHH---HHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 34433 3555543322111 01111112458999987755333222 666889999988885
No 170
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=93.13 E-value=0.68 Score=45.01 Aligned_cols=83 Identities=18% Similarity=0.021 Sum_probs=60.6
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcE
Q 016535 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 279 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv 358 (388)
..+||-+..++++.+. -.++-.+.+... ....+++-|.-+|.++.+|+.++++.+.+
T Consensus 288 ~~w~~k~~~l~~l~~~--------~eih~tV~~~~~---------------~~~~~P~~V~NHG~l~~~ef~~lL~~akv 344 (559)
T PF15024_consen 288 YMWKGKEKYLDVLHKY--------MEIHGTVYDEPQ---------------RPPNVPSFVKNHGILSGDEFQQLLRKAKV 344 (559)
T ss_pred hhhcCcHHHHHHHHhh--------cEEEEEeccCCC---------------CCcccchhhhhcCcCCHHHHHHHHHhhhE
Confidence 3467888888877654 356666654321 11235566888999999999999999999
Q ss_pred EEEc-CCCCCCChHHHHHHHhCCceEeeC
Q 016535 359 GIHS-MIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 359 ~v~p-s~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+|-. .-+| |-+.+||+|.|+|.|-+.
T Consensus 345 fiGlGfP~E--gPaPlEAia~G~vFlNp~ 371 (559)
T PF15024_consen 345 FIGLGFPYE--GPAPLEAIANGCVFLNPR 371 (559)
T ss_pred eeecCCCCC--CCChHHHHHcCCcccccc
Confidence 9954 3566 568999999999988654
No 171
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=90.74 E-value=0.95 Score=46.18 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=82.2
Q ss_pred CCCcEEEEEcccCCCCChHH-HHHHHH---HHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhc--------CC
Q 016535 267 TEYPAIISVAQFRPEKAHPL-QLEAFS---VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL--------KV 334 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~-ll~a~~---~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~--------~l 334 (388)
++....+++-|+..+|++.+ ++..+. ++++.......+.++++.|...+.... .+.+.+++.+. .+
T Consensus 527 p~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~--aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 527 PQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYL--AKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred chhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHH--HHHHHHHHHHHHHHhcCChhh
Confidence 34466788899999999999 665544 444331111134888888887554322 22333333322 22
Q ss_pred CC--cEEEccCCCHHHHHHHHHhCcEEEEcCC--CCCCChHHHHHHHhCCceEeeC
Q 016535 335 DG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 335 ~~--~V~~~g~v~~~~l~~~~~~adv~v~ps~--~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+ +|.|+....-+--..++.+||+-...|. .|..|.+-+-+|..|.+.+++-
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtl 660 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTL 660 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecc
Confidence 33 6999999888888889999999998775 7999999999999999999763
No 172
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=90.52 E-value=12 Score=33.89 Aligned_cols=157 Identities=14% Similarity=0.078 Sum_probs=93.1
Q ss_pred HHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCC-CCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHH
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD-TSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd-~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~ 293 (388)
..+.....|.++..+.-.++.+..... .+-+++.++. .....-.+.-+ .....+.-++.+. -++.-++.+..
T Consensus 82 rql~~~~~dviv~i~tp~Aq~~~s~~~---~iPVV~aavtd~v~a~Lv~~~~-~pg~NvTGvsD~~---~v~q~i~lik~ 154 (322)
T COG2984 82 RQLVGDKPDVIVAIATPAAQALVSATK---TIPVVFAAVTDPVGAKLVKSLE-QPGGNVTGVSDLL---PVAQQIELIKA 154 (322)
T ss_pred HHhhcCCCcEEEecCCHHHHHHHHhcC---CCCEEEEccCchhhccCCcccc-CCCCceeecCCcc---hHHHHHHHHHH
Confidence 344456678999998888888876532 2335665553 32221111111 1113344444433 24444555554
Q ss_pred HHHHhcCCCCCcEEE-EEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH----HHHhCcEEEEcCCC---
Q 016535 294 ALRKLDADLPRPRLQ-FVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK----LLGGAVVGIHSMID--- 365 (388)
Q Consensus 294 l~~~~~~~~~~~~l~-ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~----~~~~adv~v~ps~~--- 365 (388)
+ .|+++=+ +.-...+..+....+++++.+++.|++ |.-.+-.+-.|++. +....|++..|..+
T Consensus 155 ~-------~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~--vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~ 225 (322)
T COG2984 155 L-------LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE--VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIV 225 (322)
T ss_pred h-------CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE--EEEEecCcccccHHHHHHhcCCCcEEEEecchHHH
Confidence 4 3777655 333333334567889999999999987 44443333344444 44667888877532
Q ss_pred CCCChHHHHHHHhCCceEeeCC
Q 016535 366 EHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 366 E~~~~~vlEAma~G~PVI~~~~ 387 (388)
-++...+.+|...+.|++++|+
T Consensus 226 s~~~~l~~~a~~~kiPli~sd~ 247 (322)
T COG2984 226 SAIESLLQVANKAKIPLIASDT 247 (322)
T ss_pred HHHHHHHHHHHHhCCCeecCCH
Confidence 3455668899999999999986
No 173
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=88.34 E-value=5.7 Score=35.98 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=77.5
Q ss_pred HHHHhccCCEEEECChhHHHHHHHHhCCCCceEEEcCCC-CCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHH
Q 016535 215 YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (388)
Q Consensus 215 ~~~~~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngv-d~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~ 293 (388)
.+......|.|++........+.+..... +-++..|+ |+....-.......+ ..+.-+. ...-+...++.+.+
T Consensus 53 ~~l~~~~~DlIi~~gt~aa~~~~~~~~~~--iPVVf~~V~dp~~~~l~~~~~~~~-~nvTGv~---~~~~~~~~l~l~~~ 126 (294)
T PF04392_consen 53 RKLKAQKPDLIIAIGTPAAQALAKHLKDD--IPVVFCGVSDPVGAGLVDSLDRPG-KNVTGVS---ERPPIEKQLELIKK 126 (294)
T ss_dssp HHHCCTS-SEEEEESHHHHHHHHHH-SS---S-EEEECES-TTTTTS-S-SSS---SSEEEEE---E---HHHHHHHHHH
T ss_pred HHHhcCCCCEEEEeCcHHHHHHHHhcCCC--cEEEEEeccChhhhhccccccCCC-CCEEEEE---CCcCHHHHHHHHHH
Confidence 34455688999999877777777664421 55677777 332211111111111 2344333 33455556666666
Q ss_pred HHHHhcCCCCCc-EEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHH----hCcEEEEcCC---C
Q 016535 294 ALRKLDADLPRP-RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG----GAVVGIHSMI---D 365 (388)
Q Consensus 294 l~~~~~~~~~~~-~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~----~adv~v~ps~---~ 365 (388)
+ .|++ ++.++-+..+.......+.+++.++++|++ +....--+.+|+.+.+. ..|+++.+.. .
T Consensus 127 l-------~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~ 197 (294)
T PF04392_consen 127 L-------FPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVD 197 (294)
T ss_dssp H-------STT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHH
T ss_pred h-------CCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCEEEEECCcchH
Confidence 5 2543 332334322222345678888889998875 33333233455555444 5677776642 2
Q ss_pred CCCChHHHHHHHhCCceEeeC
Q 016535 366 EHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 366 E~~~~~vlEAma~G~PVI~~~ 386 (388)
+.+...+..+..+++||++.+
T Consensus 198 ~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 198 SNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HTHHHHHHHCCCTT--EEESS
T ss_pred hHHHHHHHHHHhcCCCEEECC
Confidence 334445567778999999875
No 174
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=87.66 E-value=12 Score=30.92 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HHHhhcccCccc----eEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHh
Q 016535 14 AVLASILILA-SHVHNARRNRTT----SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARA 88 (388)
Q Consensus 14 ~~~~~~~~~~-~~~~~~~~~~~~----~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~ 88 (388)
.|.+.+.+++ .|.+|...+.++ +++.+ ++.| |---=+.+|.++|++.- +.+-.+...+. +....+.
T Consensus 13 ~~~~li~~~v~~~~~~~~k~~Pk~~s~~~lVv---lGSG-GHT~EMlrLl~~l~~~y-~~r~yI~a~tD----~mS~~k~ 83 (211)
T KOG3339|consen 13 YVIVLIALLVFRHTQRSTKKDPKDKSLSTLVV---LGSG-GHTGEMLRLLEALQDLY-SPRSYIAADTD----EMSEQKA 83 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCCcceEEEE---EcCC-CcHHHHHHHHHHHHhhc-CceEEEEecCc----hhhHHHH
Confidence 3344444444 566777755444 55544 3444 43334456778886654 23444433321 1111111
Q ss_pred hhhhceecCC-CCeeEEeccccccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCC
Q 016535 89 VDRFGVELLH-PPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSG 149 (388)
Q Consensus 89 ~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~ 149 (388)
. .+.....+ ..+.+.+++.+-+.. ..++-....+.+...++.++.+.+||++.++.+
T Consensus 84 ~-~F~~~~a~~~a~~~~ipRsReVgQ---S~ltSv~Tti~all~s~~lv~RirPdlil~NGP 141 (211)
T KOG3339|consen 84 R-SFELSLAHCKAKNYEIPRSREVGQ---SWLTSVFTTIWALLQSFVLVWRIRPDLILCNGP 141 (211)
T ss_pred H-hhhccccccchhheecchhhhhhh---hhhhhHHHHHHHHHHHheEEEecCCCEEEECCC
Confidence 1 12222211 112222222111110 112333444555555555667788999887763
No 175
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=87.53 E-value=1.3 Score=43.56 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=47.8
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
..+++..|.... .-.+..++++....++. |+ ++++.-.+.... .+++|+....++|+.+
T Consensus 277 ~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~----~~-~~iW~~~~~~~~---------------~l~~n~~~~~W~PQ~~ 335 (500)
T PF00201_consen 277 GVVYVSFGSIVS-SMPEEKLKEIAEAFENL----PQ-RFIWKYEGEPPE---------------NLPKNVLIVKWLPQND 335 (500)
T ss_dssp EEEEEE-TSSST-T-HHHHHHHHHHHHHCS----TT-EEEEEETCSHGC---------------HHHTTEEEESS--HHH
T ss_pred CEEEEecCcccc-hhHHHHHHHHHHHHhhC----CC-cccccccccccc---------------cccceEEEeccccchh
Confidence 456667787653 23344344444444442 55 666665431111 1236899999999866
Q ss_pred HHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 349 l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+ ++...+-++-+. |--.++.||+.+|+|+|+-
T Consensus 336 l---L~hp~v~~fitH--gG~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 336 L---LAHPRVKLFITH--GGLNSTQEALYHGVPMLGI 367 (500)
T ss_dssp H---HTSTTEEEEEES----HHHHHHHHHCT--EEE-
T ss_pred h---hhcccceeeeec--cccchhhhhhhccCCccCC
Confidence 4 555444333222 3346799999999999973
No 176
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=87.44 E-value=2.4 Score=34.84 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=25.0
Q ss_pred ccCCEEEECChhHHHHHHHHhCCCCceEEEcCC
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP 252 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ng 252 (388)
..+|..++.|+.+++.+.+.+-.++++.+..-|
T Consensus 136 ~~~D~y~Vase~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 136 PGVDRYFVASEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred CCCCEEEECCHHHHHHHHHcCCChhHEEEeCcc
Confidence 558999999999999998864335677665444
No 177
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=85.80 E-value=37 Score=33.22 Aligned_cols=45 Identities=16% Similarity=-0.052 Sum_probs=32.1
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++.+.+++|+.+ +++...+..+-+. +--.+++||+.+|+|+|+-
T Consensus 338 rg~vv~~W~PQ~~---iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~ 382 (481)
T PLN02992 338 RGFVVPSWAPQAE---ILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAW 382 (481)
T ss_pred CCEEEeecCCHHH---HhCCcccCeeEec--CchhHHHHHHHcCCCEEec
Confidence 4688899998766 5666665333322 2335899999999999974
No 178
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=85.06 E-value=5.9 Score=38.70 Aligned_cols=43 Identities=14% Similarity=-0.101 Sum_probs=31.2
Q ss_pred CcEEEccCCCHHHHHHHHHh--CcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++.+.+++|+.+ ++.. +++||.- +--.+++||+++|+|+|+-
T Consensus 343 ~g~~v~~w~PQ~~---vL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~ 387 (477)
T PLN02863 343 RGLVIRGWAPQVA---ILSHRAVGAFLTH----CGWNSVLEGLVAGVPMLAW 387 (477)
T ss_pred CCEEecCCCCHHH---HhcCCCcCeEEec----CCchHHHHHHHcCCCEEeC
Confidence 5788899998755 5665 4555543 2234899999999999973
No 179
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.04 E-value=0.95 Score=35.50 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCc
Q 016535 8 IWAVITAVLASILILASHVHNARRNR 33 (388)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
+|++|+++++++|++.....|+|+++
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444443444333
No 180
>PLN03004 UDP-glycosyltransferase
Probab=83.57 E-value=5.4 Score=38.60 Aligned_cols=45 Identities=16% Similarity=-0.062 Sum_probs=34.2
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++.+.+++|+.+ +++.+++..+-+.. --.+++||+++|+|+|+.
T Consensus 334 ~g~~v~~W~PQ~~---iL~H~~v~~FvTH~--G~nS~lEal~~GVP~v~~ 378 (451)
T PLN03004 334 KGMVVKSWAPQVP---VLNHKAVGGFVTHC--GWNSILEAVCAGVPMVAW 378 (451)
T ss_pred CcEEEEeeCCHHH---HhCCCccceEeccC--cchHHHHHHHcCCCEEec
Confidence 5789999998876 67888874443332 234899999999999974
No 181
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.18 E-value=32 Score=30.66 Aligned_cols=105 Identities=14% Similarity=-0.008 Sum_probs=67.5
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCC--------CCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSC--------RNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~--------~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
++.++....-.+.+.+++.++.+++. ..+++..|.. ...-..+....+++..++.|++--.++...
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~------g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKEL------GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHc------CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 44444445556788899999999875 5667777732 111134567789999999999844444443
Q ss_pred CCHHHHHHHHHhCcEEEEcCC-CCCCChHHHHHHHhCCceEeeC
Q 016535 344 LLYRDLVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~-~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+++..+...+|++-.+|. .+.++ -+-++-..|+||+-++
T Consensus 102 ---~~~~~l~~~vd~~kIga~~~~n~~-LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 102 ---RDVEEVADYADMLQIGSRNMQNFE-LLKEVGKTKKPILLKR 141 (266)
T ss_pred ---hhHHHHHHhCCEEEECcccccCHH-HHHHHhcCCCcEEEeC
Confidence 444444455898888874 34433 2344556799999875
No 182
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=82.77 E-value=9.7 Score=33.35 Aligned_cols=46 Identities=9% Similarity=-0.081 Sum_probs=29.7
Q ss_pred ccCCCHHHHHHHHHh-----Cc-EEEEcCCCCCCChH-HHHHHHhCCceEeeCC
Q 016535 341 YKNLLYRDLVKLLGG-----AV-VGIHSMIDEHFGIS-VVEYMAAGAIPIGKHF 387 (388)
Q Consensus 341 ~g~v~~~~l~~~~~~-----ad-v~v~ps~~E~~~~~-vlEAma~G~PVI~~~~ 387 (388)
.+.++.+.+.+...+ +| +|+.++-.-++... -+|.. .|+|||++|.
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNq 214 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQ 214 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHH
Confidence 556788888887773 56 44454444444433 35655 8999999873
No 183
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=82.47 E-value=1.6 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.000 Sum_probs=28.4
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+++.+++..+|+.|-.|..+..---+-.+..+|+|+|.--+
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECC
Confidence 67888998999999888666655556778888999987544
No 184
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=81.04 E-value=15 Score=31.45 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=55.0
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhc-CCCCcEEEccCCCHHHHHHHHHhCcEEEEcC--------CCCCCCh--H
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM--------IDEHFGI--S 371 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps--------~~E~~~~--~ 371 (388)
.+.++.++...... ..++...+.+..+++ +.. +..+-..+.++..+.+.+||++++|- .....++ .
T Consensus 30 ~~~~i~~IptAs~~-~~~~~~~~~~a~~~l~G~~--~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 30 ARPKVLFVPTASGD-RDEYTARFYAAFESLRGVE--VSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAI 106 (212)
T ss_pred CCCeEEEECCCCCC-HHHHHHHHHHHHhhccCcE--EEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHH
Confidence 47889999887653 557888888888888 775 33333333567788999999999882 1122232 2
Q ss_pred HHHHHHhCCceEeeC
Q 016535 372 VVEYMAAGAIPIGKH 386 (388)
Q Consensus 372 vlEAma~G~PVI~~~ 386 (388)
+-|+...|+|+++..
T Consensus 107 l~~~~~~g~~i~G~S 121 (212)
T cd03146 107 LKAALERGVVYIGWS 121 (212)
T ss_pred HHHHHHCCCEEEEEC
Confidence 445666799998864
No 185
>PLN02534 UDP-glycosyltransferase
Probab=81.00 E-value=59 Score=31.95 Aligned_cols=45 Identities=13% Similarity=-0.111 Sum_probs=32.5
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++.+.|++|+.+ ++...++..+-+. +-..+++||+++|+|+|+-
T Consensus 344 ~g~~v~~w~pq~~---iL~h~~v~~fvtH--~G~ns~~ea~~~GvP~v~~ 388 (491)
T PLN02534 344 RGLLIKGWAPQVL---ILSHPAIGGFLTH--CGWNSTIEGICSGVPMITW 388 (491)
T ss_pred CCeeccCCCCHHH---HhcCCccceEEec--CccHHHHHHHHcCCCEEec
Confidence 5788889998755 6677776333222 3345899999999999974
No 186
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=80.59 E-value=29 Score=30.67 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-----CHHHHHHHHHhCc
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-----LYRDLVKLLGGAV 357 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v-----~~~~l~~~~~~ad 357 (388)
+-..+.+.+-++..+ ++-+++++..... +..++.+.+.+..+++|.. ++..+.-- +.++..+.+.+||
T Consensus 12 ~~~~i~~~~~~lag~-----~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad 84 (250)
T TIGR02069 12 GDREILREFVSRAGG-----EDAIIVIITSASE-EPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNAT 84 (250)
T ss_pred ChHHHHHHHHHHhCC-----CCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCC
Confidence 444466766555433 4667788875433 2446677888888888884 44444322 2356778899999
Q ss_pred EEEEc--------CCCCCCCh--HHHHHHHhCCceEeeCC
Q 016535 358 VGIHS--------MIDEHFGI--SVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 358 v~v~p--------s~~E~~~~--~vlEAma~G~PVI~~~~ 387 (388)
++++. ..++..++ .+-|+...|+|++++..
T Consensus 85 ~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SA 124 (250)
T TIGR02069 85 GIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSA 124 (250)
T ss_pred EEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccH
Confidence 77765 23445554 35688889999988753
No 187
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=80.53 E-value=5.3 Score=28.11 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=45.5
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCC---CCCCCcEEEEEcccCC
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---RSTEYPAIISVAQFRP 280 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~---~~~~~~~il~vgrl~~ 280 (388)
....|.|++..+...+.+++.+ ..++..+|-++|+..+.+.... ...-.--|.|||++..
T Consensus 16 ~~~~~~iFt~D~~~~~~~~~~G--~~~V~yLPLAa~~~~~~p~~~~~~~~~~~~~dIsFVG~~y~ 78 (79)
T PF12996_consen 16 ANSYDYIFTFDRSFVEEYRNLG--AENVFYLPLAANPERFRPIPVDPEERKKYECDISFVGSLYP 78 (79)
T ss_pred CCCCCEEEEECHHHHHHHHHcC--CCCEEEccccCCHHHhCcccCCcccccccCCCEEEeCcCcc
Confidence 4667999999999999998863 3589999999999888775443 1233456899998753
No 188
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=80.23 E-value=7.2 Score=35.62 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=48.3
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
+.-=+++|.-.-+...+..+++++++++.|..-.+...|.++.+.+..+ ..|+||..+-.
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aCP 272 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTACP 272 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccCC
Confidence 5666788876666677888999999999999877777899999888766 59999987543
No 189
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=79.90 E-value=4.2 Score=29.10 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=44.0
Q ss_pred hceecCCC-CeeEEeccccccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCccccc----chhhhcCCeEEE
Q 016535 92 FGVELLHP-PKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY----PLARIFGCRVIC 166 (388)
Q Consensus 92 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~----~~~~~~~~~~i~ 166 (388)
.|++...+ .++++++..........|. .+..+.....++.+++.|+||..+...... .-++..|.+.++
T Consensus 7 ~GvRyltngLKVYYlP~~~~~~~~t~Pt------~~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVf 80 (90)
T PF08288_consen 7 VGVRYLTNGLKVYYLPLKVFYNQCTLPT------LFGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVF 80 (90)
T ss_pred ceeEEcCCCeEEEeecchhhhcCcchHH------HHHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEe
Confidence 46666554 5888887755544444333 222233334456678999998775532211 144578999999
Q ss_pred EEec
Q 016535 167 YTHY 170 (388)
Q Consensus 167 ~~h~ 170 (388)
+-|.
T Consensus 81 TDHS 84 (90)
T PF08288_consen 81 TDHS 84 (90)
T ss_pred eccc
Confidence 8885
No 190
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=79.49 E-value=15 Score=32.73 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCcEEEecCCcccccc--hhh-hcCCeEEEEEeccccchhhhhhhhcCCccccCCccccccchh---hhhhhHHHHHHHH
Q 016535 140 TPLYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWL---SQCKIVYYTFFSW 213 (388)
Q Consensus 140 ~~Div~~~~~~~~~~~--~~~-~~~~~~i~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 213 (388)
+.|++|..++-...++ +++ ..++|.+.+=|.-. ..+... .+.+..|. ...+....+.|..
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY-~RER~~-------------ei~~a~w~~~~~~~r~~wi~~f~~ 237 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIY-TREREI-------------EILQADWIWESPYVRDLWIRFFES 237 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCcc-HHHHHH-------------HHHhcccccchHHHHHHHHHHHHH
Confidence 4589886655333333 333 78999999988632 111111 11122222 4555666677778
Q ss_pred HHHHHhccCCEEEECChhHHHHHHHH
Q 016535 214 MYGLVGSCADLAMVNSSWTQSHIEKL 239 (388)
Q Consensus 214 ~~~~~~~~a~~ii~~S~~~~~~l~~~ 239 (388)
+.+.+++.||.|++..+..++.=.+.
T Consensus 238 l~~~~Y~~Ad~I~~l~~~n~~~q~~~ 263 (268)
T PF11997_consen 238 LSRLAYRAADRITPLYEYNREWQIEL 263 (268)
T ss_pred HHHHHHHhhCeecccchhhHHHHHHh
Confidence 88999999999999999866554443
No 191
>PLN02764 glycosyltransferase family protein
Probab=79.15 E-value=16 Score=35.43 Aligned_cols=103 Identities=7% Similarity=-0.166 Sum_probs=54.6
Q ss_pred CCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeC-CCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016535 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (388)
Q Consensus 267 ~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~ 345 (388)
+..++++..|.... =..+.+-+.+..|.... .++.+++--. +.+.......+.+++..+. ..+.+.+++|
T Consensus 256 ~~sVvyvsfGS~~~-~~~~q~~ela~gL~~s~----~pflwv~r~~~~~~~~~~~lp~~f~~r~~g----rG~v~~~W~P 326 (453)
T PLN02764 256 PDSVVFCALGSQVI-LEKDQFQELCLGMELTG----SPFLVAVKPPRGSSTIQEALPEGFEERVKG----RGVVWGGWVQ 326 (453)
T ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHHhCC----CCeEEEEeCCCCCcchhhhCCcchHhhhcc----CCcEEeCCCC
Confidence 33456666677643 23345555555554442 3455444311 1100011111233333322 3577789998
Q ss_pred HHHHHHHHHhCcE--EEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 346 YRDLVKLLGGAVV--GIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 346 ~~~l~~~~~~adv--~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+.+ +++...+ ||.- +--.+++||+.+|+|+|+-
T Consensus 327 Q~~---vL~h~~v~~FvtH----~G~nS~~Eal~~GVP~l~~ 361 (453)
T PLN02764 327 QPL---ILSHPSVGCFVSH----CGFGSMWESLLSDCQIVLV 361 (453)
T ss_pred HHH---HhcCcccCeEEec----CCchHHHHHHHcCCCEEeC
Confidence 877 4555544 5532 2345899999999999974
No 192
>PLN02562 UDP-glycosyltransferase
Probab=78.32 E-value=17 Score=35.16 Aligned_cols=46 Identities=11% Similarity=-0.148 Sum_probs=32.7
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++|+.+.+++|+.+ +++..++..+-+.. --.+++||+.+|+|+|+.
T Consensus 327 ~~~~~v~~w~PQ~~---iL~h~~v~~fvtH~--G~nS~~Eal~~GvP~l~~ 372 (448)
T PLN02562 327 SKQGKVVSWAPQLE---VLKHQAVGCYLTHC--GWNSTMEAIQCQKRLLCY 372 (448)
T ss_pred ccCEEEEecCCHHH---HhCCCccceEEecC--cchhHHHHHHcCCCEEeC
Confidence 36788889998876 56666643333322 245899999999999974
No 193
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=78.31 E-value=32 Score=29.32 Aligned_cols=84 Identities=15% Similarity=0.070 Sum_probs=56.1
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEEcC---------CCCC-CChH
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAVVGIHSM---------IDEH-FGIS 371 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~l~~~~~~adv~v~ps---------~~E~-~~~~ 371 (388)
.+.++.++...... ..++.+.+.+..+++|........ ...+.+++.+.+.+||+++++- +.+. .--.
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 28 AGARVLFIPTASGD-RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHH
Confidence 36777888765433 446677888888888876222221 1124588899999999888771 2333 2234
Q ss_pred HHHHHHhCCceEeeCC
Q 016535 372 VVEYMAAGAIPIGKHF 387 (388)
Q Consensus 372 vlEAma~G~PVI~~~~ 387 (388)
+.|....|+|++++..
T Consensus 107 i~~~~~~G~v~~G~SA 122 (210)
T cd03129 107 ILKRVARGVVIGGTSA 122 (210)
T ss_pred HHHHHHcCCeEEEcCH
Confidence 7888888999998753
No 194
>PLN00164 glucosyltransferase; Provisional
Probab=77.62 E-value=75 Score=31.16 Aligned_cols=44 Identities=18% Similarity=-0.002 Sum_probs=30.4
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 337 ~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.+.+.++.|+.+ ++...++..+-+.. | -.+++||+++|+|+|+-
T Consensus 340 g~~v~~w~PQ~~---iL~h~~vg~fvtH~-G-wnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 340 GLVWPTWAPQKE---ILAHAAVGGFVTHC-G-WNSVLESLWHGVPMAPW 383 (480)
T ss_pred CeEEeecCCHHH---HhcCcccCeEEeec-c-cchHHHHHHcCCCEEeC
Confidence 477779998765 56777743333222 1 24899999999999974
No 195
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.48 E-value=24 Score=29.92 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=33.4
Q ss_pred CCCCcEEEccCCCHHHHHHHHHh-----Cc-EEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 333 KVDGNVEFYKNLLYRDLVKLLGG-----AV-VGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 333 ~l~~~V~~~g~v~~~~l~~~~~~-----ad-v~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
|+.||++ .|.++...+..+-++ +| +|+.+...-+++..--==-..|+|||+||.
T Consensus 153 gi~dn~e-igr~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~ 212 (238)
T COG3473 153 GITDNLE-IGRQEPWAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQ 212 (238)
T ss_pred CCcccch-hcccChHHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccH
Confidence 3445554 466666666655443 56 666666666666543222589999999984
No 196
>PLN02207 UDP-glycosyltransferase
Probab=77.33 E-value=9.7 Score=37.07 Aligned_cols=46 Identities=17% Similarity=-0.062 Sum_probs=30.7
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++..+.++.|+.+ +++...+..+-|.. --.+++||+.+|+|+|+-
T Consensus 331 ~~~g~i~~W~PQ~~---IL~H~~vg~FvTH~--GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 331 SGRGMICGWSPQVE---ILAHKAVGGFVSHC--GWNSIVESLWFGVPIVTW 376 (468)
T ss_pred CCCeEEEEeCCHHH---HhcccccceeeecC--ccccHHHHHHcCCCEEec
Confidence 35677779998876 45555543332221 223789999999999973
No 197
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=76.82 E-value=11 Score=36.67 Aligned_cols=46 Identities=13% Similarity=-0.081 Sum_probs=33.4
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++..+.+++|+.+ +++..++-.+-+.. -..+++||+.+|+|+|+-
T Consensus 326 ~~~g~v~~W~PQ~~---iL~h~~vg~fvtH~--G~nS~~Ea~~~GvP~l~~ 371 (455)
T PLN02152 326 EEVGMIVSWCSQIE---VLRHRAVGCFVTHC--GWSSSLESLVLGVPVVAF 371 (455)
T ss_pred cCCeEEEeeCCHHH---HhCCcccceEEeeC--CcccHHHHHHcCCCEEec
Confidence 36777789998765 67777754444332 235899999999999973
No 198
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=75.30 E-value=11 Score=36.81 Aligned_cols=78 Identities=6% Similarity=-0.082 Sum_probs=59.0
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceE
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI 383 (388)
+..=+++|.-.-+...+..+.+++++++.|..-.+...|.++.+.+..+ ...|++|..+-.+. ++.+.-.+-+|||
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~vaCPr~---sidd~~~F~KPVl 357 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVLLGCSQS---GIIDSNEFYRPIV 357 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEEccCCCc---ccccHhhCCCcee
Confidence 5677888887666677889999999999999877888899988888554 57999998865544 3345555666666
Q ss_pred ee
Q 016535 384 GK 385 (388)
Q Consensus 384 ~~ 385 (388)
++
T Consensus 358 TP 359 (496)
T TIGR00272 358 TP 359 (496)
T ss_pred cH
Confidence 54
No 199
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=74.97 E-value=24 Score=34.23 Aligned_cols=44 Identities=20% Similarity=0.037 Sum_probs=31.5
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcE--EEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVV--GIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv--~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.+|..+.+++|+.+ ++...++ ||.- +--.+++||+++|+|+|+.
T Consensus 323 ~~~g~v~~w~PQ~~---iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 323 SGRGYIVKWAPQKE---VLSHPAVGGFWSH----CGWNSTLESIGEGVPMICK 368 (451)
T ss_pred cCCeEEEccCCHHH---HhCCCccCeeeec----CchhHHHHHHHcCCCEEec
Confidence 36777889998877 5666554 5533 2234899999999999974
No 200
>PLN02167 UDP-glycosyltransferase family protein
Probab=74.62 E-value=12 Score=36.64 Aligned_cols=43 Identities=14% Similarity=-0.153 Sum_probs=29.5
Q ss_pred CcEEEccCCCHHHHHHHHHhCc--EEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~ad--v~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++..+.+++|+.+ +++... +||.- +--.+++||+++|+|+|+-
T Consensus 340 ~rg~v~~w~PQ~~---iL~h~~vg~fvtH----~G~nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 340 GRGLVCGWAPQVE---ILAHKAIGGFVSH----CGWNSVLESLWFGVPIATW 384 (475)
T ss_pred cCeeeeccCCHHH---HhcCcccCeEEee----CCcccHHHHHHcCCCEEec
Confidence 3456779998766 566644 55542 1123899999999999974
No 201
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=74.44 E-value=9 Score=30.08 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC----------------CcEEEccCCCHHHHHHHHHhCcEEEEc
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVD----------------GNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~----------------~~V~~~g~v~~~~l~~~~~~adv~v~p 362 (388)
+-.++++|.+.... +..+++++++++++.+ -.+=+.|..+.....+++.+||++|.-
T Consensus 12 ~rP~il~G~g~~~~--~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 12 KRPVILAGRGARRS--GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp SSEEEEE-HHHHHT--TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred CCEEEEEcCCcChh--hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 45677888752210 2456888888888876 112234444568888999999977753
No 202
>PLN02210 UDP-glucosyl transferase
Probab=74.15 E-value=90 Score=30.38 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=30.1
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++..+.+++|+.+ +++.+++..+-+.. | -.+++||+++|+|+|+-
T Consensus 324 ~~g~v~~w~PQ~~---iL~h~~vg~FitH~-G-~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 324 GQGVVLEWSPQEK---ILSHMAISCFVTHC-G-WNSTIETVVAGVPVVAY 368 (456)
T ss_pred CCeEEEecCCHHH---HhcCcCcCeEEeeC-C-cccHHHHHHcCCCEEec
Confidence 3445679998765 67777733332221 1 23789999999999973
No 203
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=74.04 E-value=12 Score=30.29 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=49.0
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC--CccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN--KSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
..+.++|. +.-..+..+..+..+. ...+.+++.... ..+.+..+..++.+++.+ .++.+. +
T Consensus 3 l~i~~vGD-----~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~-----~ 65 (158)
T PF00185_consen 3 LKIAYVGD-----GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT-----D 65 (158)
T ss_dssp EEEEEESS-----TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE-----S
T ss_pred CEEEEECC-----CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE-----e
Confidence 67889993 2233444444444443 678999987542 233356666677777665 346665 4
Q ss_pred HHHHHHHhCcEEEEcCCC
Q 016535 348 DLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~ 365 (388)
++.+.++.||++...++.
T Consensus 66 ~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 66 DIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp SHHHHHTT-SEEEEESSS
T ss_pred CHHHhcCCCCEEEEcCcc
Confidence 677889999987776654
No 204
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=73.69 E-value=58 Score=27.99 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=52.1
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-----CHHHHHHHHHhCcEEEEcC--------CCCCCC
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-----LYRDLVKLLGGAVVGIHSM--------IDEHFG 369 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v-----~~~~l~~~~~~adv~v~ps--------~~E~~~ 369 (388)
.+.++.++...... ..++.+++.+..+++|.. ++.++-.- +.+++.+.+.+||++++.- .+...+
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~ 105 (217)
T cd03145 28 AGARIVVIPAASEE-PAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTP 105 (217)
T ss_pred CCCcEEEEeCCCcC-hhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCCh
Confidence 35666666654322 345677788888888875 44443322 3567888999999777651 122223
Q ss_pred h--HHHHHHHhCCceEeeC
Q 016535 370 I--SVVEYMAAGAIPIGKH 386 (388)
Q Consensus 370 ~--~vlEAma~G~PVI~~~ 386 (388)
+ .+-++...|+|++++.
T Consensus 106 l~~~l~~~~~~G~v~~G~S 124 (217)
T cd03145 106 LLDALRKVYRGGVVIGGTS 124 (217)
T ss_pred HHHHHHHHHHcCCEEEEcc
Confidence 3 4667788899998765
No 205
>PLN00414 glycosyltransferase family protein
Probab=72.96 E-value=37 Score=32.91 Aligned_cols=101 Identities=5% Similarity=-0.201 Sum_probs=54.7
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeC-CCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
.++.+..|..... ..+.+.|.+..|.... .++-+++--. +.........+.+.+..+. ....+.+++|+.
T Consensus 253 sVvyvsfGS~~~~-~~~q~~e~a~gL~~s~----~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~----~g~vv~~w~PQ~ 323 (446)
T PLN00414 253 SVVFCAFGTQFFF-EKDQFQEFCLGMELTG----LPFLIAVMPPKGSSTVQEALPEGFEERVKG----RGIVWEGWVEQP 323 (446)
T ss_pred ceEEEeecccccC-CHHHHHHHHHHHHHcC----CCeEEEEecCCCcccchhhCChhHHHHhcC----CCeEEeccCCHH
Confidence 4555666765432 2345566666565542 3333444321 1100011122345554443 346677999887
Q ss_pred HHHHHHHhCc--EEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 348 DLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 348 ~l~~~~~~ad--v~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+ +++... +||.- +--.+++||+++|+|+|+-
T Consensus 324 ~---vL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~ 356 (446)
T PLN00414 324 L---ILSHPSVGCFVNH----CGFGSMWESLVSDCQIVFI 356 (446)
T ss_pred H---HhcCCccceEEec----CchhHHHHHHHcCCCEEec
Confidence 6 566664 45532 2345899999999999974
No 206
>PLN02173 UDP-glucosyl transferase family protein
Probab=72.92 E-value=28 Score=33.76 Aligned_cols=45 Identities=13% Similarity=-0.022 Sum_probs=33.4
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+++.+.+++|+.+ +++..++..+-|. +-..+++||+++|+|+|+-
T Consensus 317 ~~~~i~~W~PQ~~---iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~ 361 (449)
T PLN02173 317 DKSLVLKWSPQLQ---VLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAM 361 (449)
T ss_pred CceEEeCCCCHHH---HhCCCccceEEec--CccchHHHHHHcCCCEEec
Confidence 6788899998765 6777774444433 2346899999999999974
No 207
>PRK10494 hypothetical protein; Provisional
Probab=72.87 E-value=26 Score=31.08 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC---HHHH---HHHHHhCcE
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL---YRDL---VKLLGGAVV 358 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~---~~~l---~~~~~~adv 358 (388)
+.+.++++..++. +..++++.|+....+...+.+..++.+.++|++++-.+....+ .++. .+++....+
T Consensus 107 ~Rl~~a~~L~r~~-----~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~i 181 (259)
T PRK10494 107 PRLTEGIRLWRAN-----PGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPF 181 (259)
T ss_pred HHHHHHHHHHHhC-----CCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCE
Confidence 5677766655443 6788999986432222234456677888999986644443333 2222 223433347
Q ss_pred EEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 359 GIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++.+|.+ +++.++..+-..|..|+..
T Consensus 182 iLVTsa~-Hm~RA~~~f~~~Gl~v~p~ 207 (259)
T PRK10494 182 LLVTSAS-HLPRAMIFFQQEGLNPLPA 207 (259)
T ss_pred EEECCHH-HHHHHHHHHHHcCCceeec
Confidence 7777655 7778887777888877753
No 208
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=72.05 E-value=29 Score=30.27 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=65.9
Q ss_pred EEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--CHHH
Q 016535 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--LYRD 348 (388)
Q Consensus 271 ~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v--~~~~ 348 (388)
+++++|-+.-.-|...+-+-+.+++.++ ++.|+|+...+........++.-+...+.|.+ +.-+|.- ++.|
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-----k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~d--viT~GNH~wd~~e 74 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-----KIDFVIVNGENAAGGFGITEKIYKELLEAGAD--VITLGNHTWDQKE 74 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-----cCcEEEEcCccccCCcCCCHHHHHHHHHhCCC--EEecccccccchH
Confidence 5899999998999999999999999986 88999998754332333334444455556764 7767765 4789
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+++...+.+|-|.-
T Consensus 75 i~~~i~~~~~ilRP~N 90 (266)
T COG1692 75 ILDFIDNADRILRPAN 90 (266)
T ss_pred HHHHhhcccceeccCC
Confidence 9999999999998863
No 209
>PLN02670 transferase, transferring glycosyl groups
Probab=71.80 E-value=17 Score=35.53 Aligned_cols=44 Identities=20% Similarity=-0.040 Sum_probs=31.2
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 337 ~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.+.+.+++|+.+ +++..++..+-|. +--.+++||+++|+|+|+-
T Consensus 340 G~vv~~W~PQ~~---IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~ 383 (472)
T PLN02670 340 GMIHVGWVPQVK---ILSHESVGGFLTH--CGWNSVVEGLGFGRVLILF 383 (472)
T ss_pred CeEEeCcCCHHH---HhcCcccceeeec--CCcchHHHHHHcCCCEEeC
Confidence 477789998776 5666665333332 2235899999999999974
No 210
>PLN02208 glycosyltransferase family protein
Probab=71.67 E-value=37 Score=32.87 Aligned_cols=103 Identities=7% Similarity=-0.161 Sum_probs=55.8
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeC-CCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~-~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
.++++..|.... =..+.+.+.+..+.... .+..+++--. +.........+.+.+..+. .++.+.++.|+.
T Consensus 252 sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~----~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~----~g~~v~~W~PQ~ 322 (442)
T PLN02208 252 SVVFCSLGSQII-LEKDQFQELCLGMELTG----LPFLIAVKPPRGSSTVQEGLPEGFEERVKG----RGVVWGGWVQQP 322 (442)
T ss_pred cEEEEecccccc-CCHHHHHHHHHHHHhCC----CcEEEEEeCCCcccchhhhCCHHHHHHHhc----CCcEeeccCCHH
Confidence 466666677652 23444556555543331 2344444311 1000001112233333332 578888999887
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+ +++..++..+-|.. --.+++||+++|+|+|+-
T Consensus 323 ~---iL~H~~v~~FvtHc--G~nS~~Eai~~GVP~l~~ 355 (442)
T PLN02208 323 L---ILDHPSIGCFVNHC--GPGTIWESLVSDCQMVLI 355 (442)
T ss_pred H---HhcCCccCeEEccC--CchHHHHHHHcCCCEEec
Confidence 6 57777765544432 235899999999999973
No 211
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=70.86 E-value=13 Score=32.03 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=47.4
Q ss_pred ccCCCCC-hHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh
Q 016535 277 QFRPEKA-HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 277 rl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
-++|.|- .+...+.++.+.+. ....+++|+...- ..+..+++.+.+++..+| -|.|.|.. ..+-..
T Consensus 5 liDPdK~~~~~~~~~~~~~~~~------gtdai~vGGS~~v-t~~~~~~~v~~ik~~~lP-vilfp~~~-----~~i~~~ 71 (223)
T TIGR01768 5 LIDPDKTNPSEADEIAKAAAES------GTDAILIGGSQGV-TYEKTDTLIEALRRYGLP-IILFPSNP-----TNVSRD 71 (223)
T ss_pred eECCCCCCccccHHHHHHHHhc------CCCEEEEcCCCcc-cHHHHHHHHHHHhccCCC-EEEeCCCc-----cccCcC
Confidence 4567663 33344555555544 5677888875422 334555666777777776 56677665 234567
Q ss_pred CcEEEEcCCC
Q 016535 356 AVVGIHSMID 365 (388)
Q Consensus 356 adv~v~ps~~ 365 (388)
+|++++||..
T Consensus 72 aDa~l~~svl 81 (223)
T TIGR01768 72 ADALFFPSVL 81 (223)
T ss_pred CCEEEEEEee
Confidence 9999999843
No 212
>PLN02555 limonoid glucosyltransferase
Probab=70.40 E-value=37 Score=33.24 Aligned_cols=46 Identities=7% Similarity=-0.093 Sum_probs=31.3
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 335 ~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.+++.+.+++|+.++..- .++.+||.- +--.+++||+.+|+|+|+.
T Consensus 336 ~~~g~v~~W~PQ~~iL~H-~~v~~FvtH----~G~nS~~Eai~~GVP~l~~ 381 (480)
T PLN02555 336 GDKGKIVQWCPQEKVLAH-PSVACFVTH----CGWNSTMEALSSGVPVVCF 381 (480)
T ss_pred CCceEEEecCCHHHHhCC-CccCeEEec----CCcchHHHHHHcCCCEEeC
Confidence 467888899987663321 334555532 2234899999999999974
No 213
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=69.79 E-value=12 Score=36.75 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=31.4
Q ss_pred ccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 33 ~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
+..+|+++.| +.|--..+.++++.|.++| |+|++++...
T Consensus 5 ~~~~il~~~p----~~sH~~~~~~la~~L~~~g--h~vt~~~~~~ 43 (496)
T KOG1192|consen 5 KAHNILVPFP----GQSHLNPMLQLAKRLAERG--HNVTVVTPSF 43 (496)
T ss_pred cceeEEEECC----cccHHHHHHHHHHHHHHcC--CceEEEEeec
Confidence 3556777878 4578888899999999999 7888887764
No 214
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=69.42 E-value=24 Score=30.27 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=55.2
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
-.|+|+|+ ..+...++|.+++-...+ .-.+-..-|--.+ ..+....+.+ +.+..++...|......
T Consensus 109 GiILFv~t---n~~~~~~ve~aA~r~~gy----~~~~~w~~G~lTN--~~~l~g~~~~--~~~~~pd~~~f~~t~~~--- 174 (251)
T KOG0832|consen 109 GIILFVGT---NNGFKDLVERAARRAGGY----SHNRKWLGGLLTN--ARELFGALVR--KFLSLPDALCFLPTLTP--- 174 (251)
T ss_pred CeEEEEec---CcchHHHHHHHHHHhcCc----eeeeeeccceeec--chhhcccccc--cccCCCcceeecccCCc---
Confidence 67999986 456677777665544432 1233333332221 1111122222 22345677777766543
Q ss_pred HHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 350 ~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
|++|.....|. ..+++||.-++.|+|+
T Consensus 175 -------D~vvvln~~e~-~sAilEA~K~~IPTIg 201 (251)
T KOG0832|consen 175 -------DLVVVLNPEEN-HSAILEAAKMAIPTIG 201 (251)
T ss_pred -------ceeEecCcccc-cHHHHHHHHhCCCeEE
Confidence 88888877776 4589999999999997
No 215
>PLN02554 UDP-glycosyltransferase family protein
Probab=69.24 E-value=14 Score=36.21 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=28.3
Q ss_pred cceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 34 ~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
|++|++ .|+... |--.=+.+||+.|..+|..+.||++++..
T Consensus 2 ~~hvvl-~P~paq--GHi~P~l~LAk~La~~G~~~~vT~v~t~~ 42 (481)
T PLN02554 2 KIELVF-IPSPGI--GHLRPTVELAKLLVDSDDRLSITVIIIPS 42 (481)
T ss_pred ceEEEE-eCCcch--hhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 566444 466633 45555689999999987557788887765
No 216
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.39 E-value=78 Score=27.89 Aligned_cols=96 Identities=10% Similarity=-0.060 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc--------cHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHH
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS--------DEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL 352 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~--------~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~ 352 (388)
-..-+.+++.++.+++. .+.++.-|...++- ..+-++.|.+..++.|++ .+....+.+++..+
T Consensus 25 vEs~e~~~~~a~~~~~~------g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~---~~Tev~d~~~v~~~ 95 (250)
T PRK13397 25 IESYDHIRLAASSAKKL------GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL---SVSEIMSERQLEEA 95 (250)
T ss_pred cCCHHHHHHHHHHHHHc------CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC---EEEeeCCHHHHHHH
Confidence 34456677777776554 67777777643221 235678899999999987 22333445677777
Q ss_pred HHhCcEEEEcCCCCCCChHHHHHH-HhCCceEeeC
Q 016535 353 LGGAVVGIHSMIDEHFGISVVEYM-AAGAIPIGKH 386 (388)
Q Consensus 353 ~~~adv~v~ps~~E~~~~~vlEAm-a~G~PVI~~~ 386 (388)
...+|++-.+|.. .....++++. ..|+||+.++
T Consensus 96 ~e~vdilqIgs~~-~~n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 96 YDYLDVIQVGARN-MQNFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred HhcCCEEEECccc-ccCHHHHHHHHccCCeEEEeC
Confidence 7779999888753 2335566655 6799999765
No 217
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=68.32 E-value=19 Score=33.35 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=48.0
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
+.-=+++|.-.-+...+..+.+++++++.|..-.+...|.++.+.+..+ ...|++|..+-.
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~eiD~fV~~aCP 293 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMF-DQIDVFVQVACP 293 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCcCEEEEecCC
Confidence 5566778876666677888999999999999877778899988887544 579999987543
No 218
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=68.25 E-value=15 Score=27.26 Aligned_cols=75 Identities=11% Similarity=-0.029 Sum_probs=45.5
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC-CCCChHHHHHHHhCCceEee
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID-EHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~-E~~~~~vlEAma~G~PVI~~ 385 (388)
++++|+|. .+.-..+++++.+++.|++ +.+. ..+..++.+....+|+++..... --+.-.--.+-..|+||..-
T Consensus 4 ll~C~~Ga--SSs~la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 4 LVLCAGGG--TSGLLANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred EEECCCCC--CHHHHHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEe
Confidence 34445552 1455778999999999987 4433 34458899999999987775422 11111122233456777665
Q ss_pred C
Q 016535 386 H 386 (388)
Q Consensus 386 ~ 386 (388)
|
T Consensus 79 ~ 79 (99)
T cd05565 79 T 79 (99)
T ss_pred C
Confidence 4
No 219
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=68.21 E-value=40 Score=28.96 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE
Q 016535 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 282 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 361 (388)
.+.+..++.+.+.. .++-.+-+-.. +...++.++++++|....+.+-+..|-+.+..++..+|..+.
T Consensus 71 ~~p~~~i~~fa~ag-------ad~It~H~E~~------~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~Vll 137 (220)
T COG0036 71 ENPDRYIEAFAKAG-------ADIITFHAEAT------EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLL 137 (220)
T ss_pred CCHHHHHHHHHHhC-------CCEEEEEeccC------cCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 34577888887762 33322222222 223478888999999989999999999999999999998887
Q ss_pred cCCCCCCC
Q 016535 362 SMIDEHFG 369 (388)
Q Consensus 362 ps~~E~~~ 369 (388)
=|..-|||
T Consensus 138 MsVnPGfg 145 (220)
T COG0036 138 MSVNPGFG 145 (220)
T ss_pred EeECCCCc
Confidence 77777766
No 220
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=67.98 E-value=17 Score=31.77 Aligned_cols=95 Identities=13% Similarity=-0.019 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCc------E
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV------V 358 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad------v 358 (388)
+.+..|++ |-+.+ +.-.+++-|+.. .++..+.+..++.+.++|++++-.+...-+.+.........+ +
T Consensus 68 ~Rl~~A~~-LYk~g----k~~~ilvSGg~~-~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~ 141 (239)
T PRK10834 68 YRIQGAIN-AYNSG----KVNYLLLSGDNA-LQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDF 141 (239)
T ss_pred HHHHHHHH-HHHhC----CCCEEEEeCCCC-CCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCE
Confidence 33444444 44443 455677777642 223345667888899999998877776666555555554444 5
Q ss_pred EEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 359 GIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.|.+|.+ +++.++.-|-..|..+++..
T Consensus 142 iIVTq~f-Hm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 142 IIITQRF-HCERALFIALHMGIQAQCYA 168 (239)
T ss_pred EEECCHH-HHHHHHHHHHHcCCceEEEe
Confidence 5555544 77888888888998887653
No 221
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=66.88 E-value=87 Score=27.30 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=53.2
Q ss_pred CcEEEEEeCCCC-CccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcC--------CCC--CCChHH
Q 016535 304 RPRLQFVGSCRN-KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM--------IDE--HFGISV 372 (388)
Q Consensus 304 ~~~l~ivG~~~~-~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps--------~~E--~~~~~v 372 (388)
+-++.++..... .+..+|.++.++..+++|.. +..+-.. ++..+.+..||++..+- ... ++--.+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~--~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l 106 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRV--ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPI 106 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccc--hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHH
Confidence 445666665543 23456888899999999875 4444322 56678899999777661 122 233346
Q ss_pred HHHHHhCCceEeeCC
Q 016535 373 VEYMAAGAIPIGKHF 387 (388)
Q Consensus 373 lEAma~G~PVI~~~~ 387 (388)
-|+...|+|++++..
T Consensus 107 ~~~~~~G~~~~G~SA 121 (233)
T PRK05282 107 REAVKNGTPYIGWSA 121 (233)
T ss_pred HHHHHCCCEEEEECH
Confidence 789999999998754
No 222
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=66.28 E-value=60 Score=30.64 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=56.1
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcE-EEccCCCHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRD 348 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V-~~~g~v~~~~ 348 (388)
+.+..++. .++.+.+.+..++. +.+.+.++ +.+..+++++.... ..+ .+.|. +.
T Consensus 28 f~VvaLaa---~~n~~~l~~q~~~f---------~p~~v~i~------~~~~~~~l~~~l~~----~~~~v~~G~---~~ 82 (385)
T PRK05447 28 FRVVALSA---GKNVELLAEQAREF---------RPKYVVVA------DEEAAKELKEALAA----AGIEVLAGE---EG 82 (385)
T ss_pred cEEEEEEc---CCCHHHHHHHHHHh---------CCCEEEEc------CHHHHHHHHHhhcc----CCceEEECh---hH
Confidence 44444432 56777777765555 44666776 44444455543321 123 44564 77
Q ss_pred HHHHHHh--CcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 349 LVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 349 l~~~~~~--adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+.++... +|++|.......--.+.++|+.+|++|..-|
T Consensus 83 ~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 83 LCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred HHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeC
Confidence 7777775 5788877654432356899999999998754
No 223
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=65.59 E-value=26 Score=33.35 Aligned_cols=78 Identities=15% Similarity=0.019 Sum_probs=55.2
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC-------CCCC---hHHH
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID-------EHFG---ISVV 373 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~-------E~~~---~~vl 373 (388)
+.-=+|+|.-.-+.+.+..++|++++++.|..-.+...|.+....+. -+...|+||.-+-. ..|. ++.+
T Consensus 267 ~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLA-nF~eIDvfV~iaCp~lsid~s~~F~kPiltPf 345 (453)
T KOG2648|consen 267 RTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLA-NFPEIDVFVQIACPRLSIDWSKEFYKPLLTPF 345 (453)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhc-CCccccEEEEEeCcccchhhhhhhccccccHH
Confidence 56667888866666889999999999999998778888999766655 55669999864322 1222 2356
Q ss_pred HHHHhCCce
Q 016535 374 EYMAAGAIP 382 (388)
Q Consensus 374 EAma~G~PV 382 (388)
||-.+.-|+
T Consensus 346 Ea~~Al~~~ 354 (453)
T KOG2648|consen 346 EAEVALNPI 354 (453)
T ss_pred HHHHhcCcc
Confidence 766655553
No 224
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.47 E-value=51 Score=26.02 Aligned_cols=102 Identities=12% Similarity=-0.033 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHH
Q 016535 245 RIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQS 324 (388)
Q Consensus 245 ~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~ 324 (388)
-..+++-|.+.+.-+-..... +....++.++.+.. .....+-+.+.++++.. .+++.+.+.|.... +.+..++
T Consensus 31 G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~-~~~~~~~~~~~~L~~~~---~~~~~i~vGG~~~~--~~~~~~~ 103 (137)
T PRK02261 31 GFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYG-HGEIDCRGLREKCIEAG---LGDILLYVGGNLVV--GKHDFEE 103 (137)
T ss_pred CCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccc-cCHHHHHHHHHHHHhcC---CCCCeEEEECCCCC--CccChHH
Confidence 456788887753221111111 22244555554443 45566666677776663 14676555554321 1112335
Q ss_pred HHHHHHhcCCCCcEEEccCCCHHHHHHHHHh
Q 016535 325 LKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 325 l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
..+..+++|.. ..|.+..+.+++..++..
T Consensus 104 ~~~~l~~~G~~--~vf~~~~~~~~i~~~l~~ 132 (137)
T PRK02261 104 VEKKFKEMGFD--RVFPPGTDPEEAIDDLKK 132 (137)
T ss_pred HHHHHHHcCCC--EEECcCCCHHHHHHHHHH
Confidence 66677778875 678877788888887765
No 225
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=65.29 E-value=18 Score=26.50 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=45.5
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHH--HHHhCCceEe
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVE--YMAAGAIPIG 384 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlE--Ama~G~PVI~ 384 (388)
++++|+|-. ..-..+++++.+++.+++-+|...+. .++.+....+|+++..+.... -..-++ +.-.++||..
T Consensus 3 l~~Cg~G~s--TS~~~~ki~~~~~~~~~~~~v~~~~~---~~~~~~~~~~Diil~~Pqv~~-~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 3 LLVCSAGMS--TSILVKKMKKAAEKRGIDAEIEAVPE---SELEEYIDDADVVLLGPQVRY-MLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred EEEcCCCch--HHHHHHHHHHHHHHCCCceEEEEecH---HHHHHhcCCCCEEEEChhHHH-HHHHHHHHhccCCCcEEE
Confidence 456666532 22356789999999998755555543 677778888997776543211 112222 3456788876
Q ss_pred eC
Q 016535 385 KH 386 (388)
Q Consensus 385 ~~ 386 (388)
-+
T Consensus 77 I~ 78 (96)
T cd05564 77 ID 78 (96)
T ss_pred cC
Confidence 54
No 226
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=65.25 E-value=20 Score=34.92 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCC-ceEeeC
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-IPIGKH 386 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~-PVI~~~ 386 (388)
.....+.++.+..+++|.-.+...-.++||+.+|| |||-+|
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd 375 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISD 375 (464)
T ss_pred cchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcC
Confidence 36888899999999999999988889999999997 676665
No 227
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=63.07 E-value=13 Score=27.28 Aligned_cols=74 Identities=9% Similarity=-0.085 Sum_probs=45.1
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCCceEe
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGAIPIG 384 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~PVI~ 384 (388)
++++|+|-. ..-..+++++.+++.|++-+|.-.+. .++.+....+|+++..+.... -..-++.. ..|+||..
T Consensus 7 Ll~C~~G~s--SS~l~~k~~~~~~~~gi~~~v~a~~~---~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 7 LLLCAAGMS--TSLLVNKMNKAAEEYGVPVKIAAGSY---GAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKKGIPVEV 80 (95)
T ss_pred EEECCCchh--HHHHHHHHHHHHHHCCCcEEEEEecH---HHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhcCCCEEE
Confidence 455555532 33466889999999998744444443 678788889998877643211 22223333 34668876
Q ss_pred eC
Q 016535 385 KH 386 (388)
Q Consensus 385 ~~ 386 (388)
-+
T Consensus 81 I~ 82 (95)
T TIGR00853 81 IN 82 (95)
T ss_pred eC
Confidence 54
No 228
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.93 E-value=11 Score=28.99 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Q 016535 8 IWAVITAVLASILILASHVHNARRN 32 (388)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
|++|+..|...||+++.+++|.|++
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4457777766666666666555543
No 229
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=61.58 E-value=1.4e+02 Score=27.86 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=66.1
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc--------cHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS--------DEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~--------~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
++.+| ...-.+-+.+++.++.+++. ..++...|...++. ..+-++.|.+..++.|++ .+...
T Consensus 103 ~vIAG-PCsIEs~eq~l~~A~~lk~~------g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~---~~tev 172 (352)
T PRK13396 103 VVVAG-PCSVENEEMIVETAKRVKAA------GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG---IITEV 172 (352)
T ss_pred EEEEe-CCcccCHHHHHHHHHHHHHc------CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc---EEEee
Confidence 44444 34456677888888888765 45665555432221 234567778888899887 23333
Q ss_pred CCHHHHHHHHHhCcEEEEcCCC-CCCChHHHHHHHhCCceEeeC
Q 016535 344 LLYRDLVKLLGGAVVGIHSMID-EHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~~-E~~~~~vlEAma~G~PVI~~~ 386 (388)
.+.+++..+...+|++-.+|.. .+|++ +-++-..|+||+-++
T Consensus 173 ~d~~~v~~~~~~~d~lqIga~~~~n~~L-L~~va~t~kPVllk~ 215 (352)
T PRK13396 173 MDAADLEKIAEVADVIQVGARNMQNFSL-LKKVGAQDKPVLLKR 215 (352)
T ss_pred CCHHHHHHHHhhCCeEEECcccccCHHH-HHHHHccCCeEEEeC
Confidence 4456666666669999999853 44443 344457899999764
No 230
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.46 E-value=43 Score=29.16 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=22.6
Q ss_pred CcE-EEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 356 AVV-GIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 356 adv-~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+|. ++.|...+...-.+-++...|.|||+.|+
T Consensus 56 ~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~ 88 (257)
T PF13407_consen 56 VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDS 88 (257)
T ss_dssp ESEEEEESSSTTTTHHHHHHHHHTTSEEEEESS
T ss_pred CCEEEecCCCHHHHHHHHHHHhhcCceEEEEec
Confidence 564 44555666666667788888999998765
No 231
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=60.83 E-value=1.1e+02 Score=27.24 Aligned_cols=102 Identities=13% Similarity=-0.033 Sum_probs=59.7
Q ss_pred EcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEe--------CCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG--------SCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 275 vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG--------~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
++....-...+.+++.++.+++.. .++...+ .+......+-++.+++..++.|++-- ....+.
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~------~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~---t~~~d~ 99 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAG------AKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVV---TEVMDP 99 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHH------HHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEE---EeeCCh
Confidence 444555567788888888886553 1111111 00111134456788999999988722 233334
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHH-HHhCCceEeeC
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEY-MAAGAIPIGKH 386 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEA-ma~G~PVI~~~ 386 (388)
+++..+...+|++-.+|.. .....++++ ...|+||+.++
T Consensus 100 ~~~~~l~~~~d~lkI~s~~-~~n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 100 RDVEIVAEYADILQIGARN-MQNFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred hhHHHHHhhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeC
Confidence 5555555668988888753 333445554 45799999875
No 232
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=60.08 E-value=77 Score=26.77 Aligned_cols=92 Identities=10% Similarity=-0.080 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCC-cEEEc-cCCCHHHHHHHHHhCcE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG-NVEFY-KNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-~V~~~-g~v~~~~l~~~~~~adv 358 (388)
.|=...+.+|++.+.+-. .=.+.++|. ..+....+++.++..+-.- +=+++ |..++.. .+-+..=|+
T Consensus 43 ~kT~~~L~~A~~~i~~i~-----~~~ILfVgt-----k~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~-~~~~~~Pdl 111 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-----PEDILVVSA-----RIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPM-QKAFREPEV 111 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-----CCeEEEEec-----CHHHHHHHHHHHHHhCCceECCeeCCCCCCCcc-ccccCCCCE
Confidence 344455666666554442 447888886 4455566777777765431 11344 4343322 223455666
Q ss_pred EEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 359 GIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
++.....+ =..++.||...|.|+|+
T Consensus 112 liv~dp~~-~~~Av~EA~~l~IP~Ia 136 (196)
T TIGR01012 112 VVVTDPRA-DHQALKEASEVGIPIVA 136 (196)
T ss_pred EEEECCcc-ccHHHHHHHHcCCCEEE
Confidence 66543322 25689999999999997
No 233
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=59.78 E-value=51 Score=28.05 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcE--EEc-cCCCHHHHHHHHHhCc
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV--EFY-KNLLYRDLVKLLGGAV 357 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V--~~~-g~v~~~~l~~~~~~ad 357 (388)
.|=...+..|+.-+.+.. .-.+.++|. ..+..+.+++.++..+.. .| +++ |..++..+ +.+..=|
T Consensus 49 ~kT~~~L~~A~~~i~~~~-----~~~ILfVgT-----k~~~~~~v~k~A~~~g~~-~v~~RWlgG~LTN~~~-~~~~~Pd 116 (204)
T PRK04020 49 RKTDERIRIAAKFLSRYE-----PEKILVVSS-----RQYGQKPVQKFAEVVGAK-AITGRFIPGTLTNPSL-KGYIEPD 116 (204)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCeEEEEeC-----CHHHHHHHHHHHHHhCCe-eecCccCCCcCcCcch-hccCCCC
Confidence 455566667777665542 446778886 445556778888777653 11 344 44444443 2334555
Q ss_pred EEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 358 VGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
+++.....+. ..++.||...|.|+|+
T Consensus 117 liiv~dp~~~-~~AI~EA~kl~IP~Ia 142 (204)
T PRK04020 117 VVVVTDPRGD-AQAVKEAIEVGIPVVA 142 (204)
T ss_pred EEEEECCccc-HHHHHHHHHhCCCEEE
Confidence 5554433222 6789999999999998
No 234
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=59.48 E-value=52 Score=31.30 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHHHHHHhc--CCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCc
Q 016535 280 PEKAHPLQLEAFSVALRKLD--ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~l~~~~~--~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 357 (388)
...|.+.+++++........ ...++-.+.++|..... ....+++++.++.|+..+..+.+.-+-+|+.+ +.+|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~---~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~ 209 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG---GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAK 209 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc---hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCC
Confidence 45678888877765543211 11135678888875322 23568999999999998888888777888887 56666
Q ss_pred EEEEcCCCCCCChHHHHHH--HhCCceEeeC
Q 016535 358 VGIHSMIDEHFGISVVEYM--AAGAIPIGKH 386 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAm--a~G~PVI~~~ 386 (388)
+-|..+.. ++....+.| .+|.|.+...
T Consensus 210 ~niv~~~~--~~~~~a~~L~~r~GiP~~~~~ 238 (406)
T cd01967 210 LNLVHCSR--SMNYLAREMEERYGIPYMEVN 238 (406)
T ss_pred EEEEEChH--HHHHHHHHHHHhhCCCEEEec
Confidence 55543322 233333333 3788887643
No 235
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=58.34 E-value=14 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---hhcccCcc
Q 016535 5 GILIWAVITAVLASILILASHV---HNARRNRT 34 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 34 (388)
|+.+|-+..+..|.++++..++ +|+|++++
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4556644444444444443343 55555543
No 236
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=58.24 E-value=1.6e+02 Score=27.44 Aligned_cols=205 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred CCcEEEecCCcccccc--hhhhcCCeEEEEEeccccchhhhhhhhcCC--ccccCCccccccchhhhhhhHHHHHHHHHH
Q 016535 140 TPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGS--SMYNNNASIAQSNWLSQCKIVYYTFFSWMY 215 (388)
Q Consensus 140 ~~Div~~~~~~~~~~~--~~~~~~~~~i~~~h~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (388)
+.|++|........-. ..+.+|.|++.|+...+...++...+-++. ..+++
T Consensus 73 ~lDVlIEmg~ql~~~~~~~~~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~------------------------- 127 (364)
T PF10933_consen 73 ELDVLIEMGAQLDPEWLDYMRARGGKVVSYRCGNDYVMDIESMLFNKPSGHLFNG------------------------- 127 (364)
T ss_pred cCCEEEEccCccCHHHHHHHHHcCCeEEEEeCCchHHHHhhHHhcCCCCCccCCC-------------------------
Confidence 6899987755332212 334689999999987665555444322221 11111
Q ss_pred HHHhccCCEEEECCh---hHHHHHHHHhCCCCceEEEcCCCCCCCCccCC-----------CCC-CCCCcEEEEEcccCC
Q 016535 216 GLVGSCADLAMVNSS---WTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP-----------LER-STEYPAIISVAQFRP 280 (388)
Q Consensus 216 ~~~~~~a~~ii~~S~---~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~-----------~~~-~~~~~~il~vgrl~~ 280 (388)
+..|.|-+.-+ .....++..+. .++.++|.--++.++...- ..+ ++...+-+|=-++.-
T Consensus 128 ----~~yD~VW~lPq~~~~~~~yl~~l~r--~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~v 201 (364)
T PF10933_consen 128 ----APYDEVWTLPQFENTCAPYLETLHR--CPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISV 201 (364)
T ss_pred ----CCCceeEeccchhhhchHHHHHHhc--CCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceE
Confidence 22344444322 12233443332 3555566554443322110 000 112222223344444
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCC-CCccHHHHHHHHHHHHhcCC--CCcEEEccCCCHHHHHHHHHh-C
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCR-NKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGG-A 356 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~-~~~~~~~~~~l~~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~-a 356 (388)
-|.-..=+-+++++-+..+ ..+..+.+-..- .++ ...+...+..+.+ +....|.|+. +++.+++. .
T Consensus 202 vK~~~~PmLi~E~aYR~~P---~~v~~~~V~Nt~~~ke----~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~t 271 (364)
T PF10933_consen 202 VKTCFIPMLICEEAYRADP---DAVEHVYVTNTYHLKE----HPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHT 271 (364)
T ss_pred EeecCccHHHHHHHHHhCh---hhcceEEEecchhhhc----CHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCC
Confidence 4554443344444444431 135666665442 222 2345555555544 3567888886 55665554 7
Q ss_pred cEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 357 VVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 357 dv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
|++|.-.|..+.....+||+-.|=|-|-.
T Consensus 272 D~VvSHqWeN~lNYlY~daLyggYPLVHN 300 (364)
T PF10933_consen 272 DAVVSHQWENPLNYLYYDALYGGYPLVHN 300 (364)
T ss_pred CEEEeccccchhhHHHHHHHhcCCCcccC
Confidence 89998888888999999999999998743
No 237
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=57.71 E-value=12 Score=34.09 Aligned_cols=77 Identities=9% Similarity=-0.086 Sum_probs=41.8
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceE
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI 383 (388)
+.--+++|.-.-+...+..+.+++++++.|..--+...|.++.+.+..+ ...|+||..+-.+. ++.+.-..-+|||
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~~aCPr~---~idd~~~f~kPvl 285 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQIACPRL---SIDDSKDFYKPVL 285 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-THH---HHT--S--SS-EE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEEecCCCc---ccCchhhcCCccc
Confidence 5666778875555567778899999999888766777899987777765 58999998754321 3333444444444
Q ss_pred e
Q 016535 384 G 384 (388)
Q Consensus 384 ~ 384 (388)
+
T Consensus 286 t 286 (307)
T PF01866_consen 286 T 286 (307)
T ss_dssp -
T ss_pred C
Confidence 3
No 238
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=57.70 E-value=72 Score=28.64 Aligned_cols=39 Identities=23% Similarity=0.093 Sum_probs=30.9
Q ss_pred HHHHHHHH--hCcEEEEcCC-CCCCChHHHHHHH--hCCceEee
Q 016535 347 RDLVKLLG--GAVVGIHSMI-DEHFGISVVEYMA--AGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~--~adv~v~ps~-~E~~~~~vlEAma--~G~PVI~~ 385 (388)
.++.+..+ .+|+++-.|. .-.|.--++++|+ +..|+|-.
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 46778888 7899998885 4568888999998 57888854
No 239
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=57.39 E-value=63 Score=30.21 Aligned_cols=79 Identities=9% Similarity=-0.145 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC--HHHHHHHHHhCcE-EEEc
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL--YRDLVKLLGGAVV-GIHS 362 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~--~~~l~~~~~~adv-~v~p 362 (388)
..+-|++++-+.....+..++.++.-... +...|.+.-++++.+.++. +.|-++.| +.++...+.+.|. +.+|
T Consensus 23 ~~~lAI~eINa~GGvlG~~le~v~~Dp~S--d~~~ya~~A~~Li~~d~V~--~ifGc~TSasRKaVlPvvE~~~~LL~Yp 98 (363)
T PF13433_consen 23 GALLAIEEINAAGGVLGRQLEPVIYDPAS--DPSTYAEKAEKLIREDGVR--AIFGCYTSASRKAVLPVVERHNALLFYP 98 (363)
T ss_dssp HHHHHHHHHHCTTTBTTB--EEEEE--TT---HHHHHHHHHHHHHHS-----EEEE--SHHHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHhcCCcCCeEEEEEEECCCC--CHHHHHHHHHHHHHhCCcc--EEEecchhhhHHHHHHHHHhcCceEEec
Confidence 34455666655543334567777765443 2334666677777766654 56656554 8889999999994 4579
Q ss_pred CCCCCC
Q 016535 363 MIDEHF 368 (388)
Q Consensus 363 s~~E~~ 368 (388)
+.||||
T Consensus 99 ~~YEG~ 104 (363)
T PF13433_consen 99 TQYEGF 104 (363)
T ss_dssp S-----
T ss_pred cccccc
Confidence 999996
No 240
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=57.27 E-value=52 Score=26.00 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEEcCCCCCCChHHHHHHH-hCCceE
Q 016535 321 RLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPI 383 (388)
Q Consensus 321 ~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a----d-v~v~ps~~E~~~~~vlEAma-~G~PVI 383 (388)
..+.+++.+++++++ +.|.-.=...++.+.++++ | +.+.|--+-..+.++.+|++ .+.|+|
T Consensus 29 i~~~~~~~a~~~g~~--v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~v 95 (141)
T TIGR01088 29 IVEIIETFAAQLNVE--LEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVV 95 (141)
T ss_pred HHHHHHHHHHHcCCE--EEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEE
Confidence 344556666666654 7776665567777776665 3 56667777778888888874 577766
No 241
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=57.23 E-value=48 Score=29.26 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 287 ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
+|+++-.+-+......+.+.+++.-.. +.+.--.+.+.++.+|++ .+-.|.+. +....++.+.++=++.|..
T Consensus 19 ~vk~Ll~lN~~~~~e~~~VEVVllSRN----spdTGlRv~nSI~hygL~ItR~~ft~G---~~~~~Yl~af~v~LFLSan 91 (264)
T PF06189_consen 19 FVKALLALNDLLPEEDPLVEVVLLSRN----SPDTGLRVFNSIRHYGLDITRAAFTGG---ESPYPYLKAFNVDLFLSAN 91 (264)
T ss_pred HHHHHHHhhccccccCCceEEEEEecC----CHHHHHHHHHhHHHhCCcceeeeecCC---CCHHHHHHHhCCceEeeCC
Confidence 556666554443211245777777654 445555777788888875 33445554 4556677777766666665
Q ss_pred CCCChHHHHHHHhCCce
Q 016535 366 EHFGISVVEYMAAGAIP 382 (388)
Q Consensus 366 E~~~~~vlEAma~G~PV 382 (388)
+. -+.||+.+|.|-
T Consensus 92 ~~---DV~~Ai~~G~~A 105 (264)
T PF06189_consen 92 ED---DVQEAIDAGIPA 105 (264)
T ss_pred HH---HHHHHHHcCCCc
Confidence 54 577777777764
No 242
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=57.03 E-value=40 Score=26.84 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEEcCCCCCCChHHHHHHH-hCCceE
Q 016535 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPI 383 (388)
Q Consensus 323 ~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a----d-v~v~ps~~E~~~~~vlEAma-~G~PVI 383 (388)
+.+++.+++++++ +.|.-.=...++.+.++++ | +.+.|--+-..+.++.+|++ .++|+|
T Consensus 33 ~~~~~~a~~~g~~--~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 33 ALCRAAAEALGLE--VEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVI 97 (146)
T ss_pred HHHHHHHHHcCCE--EEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEE
Confidence 3445555555543 5555444455555555443 4 55566666667777777763 466665
No 243
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=56.89 E-value=50 Score=31.16 Aligned_cols=73 Identities=21% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCc-EEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE--ccCCCHHHHHHHHHhCcEEEEcCCCCCCChHH-HHHHHh
Q 016535 303 PRP-RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF--YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISV-VEYMAA 378 (388)
Q Consensus 303 ~~~-~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~--~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~v-lEAma~ 378 (388)
.+. +++++|. +.+ ++++.++++. ..++.+ ...-+.+++.++++.+|++|...-.- ++..+ --|+.+
T Consensus 21 ~~~~~v~va~r-----~~~---~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~ 90 (386)
T PF03435_consen 21 GPFEEVTVADR-----NPE---KAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEA 90 (386)
T ss_dssp TCE-EEEEEES-----SHH---HHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHH
T ss_pred CCCCcEEEEEC-----CHH---HHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHh
Confidence 355 8888886 443 4444444321 123443 34445677999999999999876443 45554 455677
Q ss_pred CCceEee
Q 016535 379 GAIPIGK 385 (388)
Q Consensus 379 G~PVI~~ 385 (388)
|++.|-+
T Consensus 91 g~~yvD~ 97 (386)
T PF03435_consen 91 GVHYVDT 97 (386)
T ss_dssp T-EEEES
T ss_pred CCCeecc
Confidence 8887753
No 244
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=56.53 E-value=79 Score=24.48 Aligned_cols=48 Identities=21% Similarity=0.095 Sum_probs=34.7
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 337 ~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
.|.+....+.+++.+.++.+|+++..+.. .+.-.+++++ -++-.|++.
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~ 67 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTA 67 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEES
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEc
Confidence 58888888889999999999988875433 4666677777 566655543
No 245
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=56.29 E-value=13 Score=32.88 Aligned_cols=40 Identities=20% Similarity=-0.002 Sum_probs=30.0
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
+++.+++..+|+.+..|..+...-.+..|+.+|+|++.-.
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5666677789998877766665556788899999998753
No 246
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=56.19 E-value=1e+02 Score=29.96 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=57.6
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhhhhceecCCCCeeEEeccccccccC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (388)
+||+|+.++...- -....+..+.+.+.+.. ++|.+|+...+ +......+...... .++.+.. +
T Consensus 1 LRIGyvS~Df~~H-pv~~l~~~ll~~hDr~r--fev~~Ys~~~~-d~~~~~~~~~~~~~-------~~~dl~~--~---- 63 (468)
T PF13844_consen 1 LRIGYVSSDFRNH-PVGHLLQPLLENHDRSR--FEVFCYSLGPD-DGDTFRQRIRAEAD-------HFVDLSG--L---- 63 (468)
T ss_dssp EEEEEEES-SSSS-HHHHHHHHHHHHHHHHT--EEEEEEESS----SCHHHHHHHHHSE-------EEEEEEE-------
T ss_pred CEEEEECCcchhC-HHHHHHHHHHHhcCccc--EEEEEEECCCC-CCcHHHHHHHHhCC-------eEEECcc--C----
Confidence 5899999999766 77788888999999988 89999986542 11223233332111 0111110 0
Q ss_pred CCCceehhhhhhhHHHHHHHHHhhcCCcEEEecCCcccccc--hhhhcCCeEEE
Q 016535 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVIC 166 (388)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Div~~~~~~~~~~~--~~~~~~~~~i~ 166 (388)
.. --...+.++..+.||+++..++..... ++..+.+|+-+
T Consensus 64 --~~----------~~~~A~~Ir~D~IDILVDL~GhT~~~R~~ifA~RpAPVQv 105 (468)
T PF13844_consen 64 --SD----------DAEAAQRIRADGIDILVDLSGHTAGNRLEIFALRPAPVQV 105 (468)
T ss_dssp --TT----------SHHHHHHHHHTT-SEEEESSTSSTSSSHHHHHT-SSSEEE
T ss_pred --Cc----------HHHHHHHHHHCCCCEEEeCCCcCCCCHhHHHhcCCcceEE
Confidence 00 001223467789999999988654422 44456667643
No 247
>PRK10481 hypothetical protein; Provisional
Probab=55.94 E-value=1.4e+02 Score=25.93 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=48.9
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc----CCCHHHHHHHHH
Q 016535 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK----NLLYRDLVKLLG 354 (388)
Q Consensus 279 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g----~v~~~~l~~~~~ 354 (388)
.|..++..++.|+. ..-++-++-.. .+..++-.+...+.|.+ +.+.+ ..+.+++.+.-+
T Consensus 114 ~P~~~i~~lv~Al~----------~g~riGVitP~-----~~qi~~~~~kw~~~G~~--v~~~~aspy~~~~~~l~~aa~ 176 (224)
T PRK10481 114 EPSRILPPLVAAIV----------GGHQVGVIVPV-----EEQLAQQAQKWQVLQKP--PVFALASPYHGSEEELIDAGK 176 (224)
T ss_pred CchhhHHHHHHHhc----------CCCeEEEEEeC-----HHHHHHHHHHHHhcCCc--eeEeecCCCCCCHHHHHHHHH
Confidence 46667777777655 23456666553 23333444555555765 33433 133445554333
Q ss_pred -----hCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 355 -----GAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 355 -----~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
.+|++++-...-.+.+.-.=.-..|+|||.+|.
T Consensus 177 ~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~ 214 (224)
T PRK10481 177 ELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNV 214 (224)
T ss_pred HhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHH
Confidence 688777654322222332223468999998863
No 248
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=55.60 E-value=20 Score=22.11 Aligned_cols=10 Identities=30% Similarity=0.953 Sum_probs=7.4
Q ss_pred CCCchhHHHH
Q 016535 1 MAPYGILIWA 10 (388)
Q Consensus 1 ~~~~~~~~~~ 10 (388)
|-+||.-+|.
T Consensus 1 MGgy~~yVW~ 10 (45)
T TIGR03141 1 MGGYAFYVWL 10 (45)
T ss_pred CCCccHHHHH
Confidence 6788887774
No 249
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=55.46 E-value=80 Score=28.93 Aligned_cols=96 Identities=10% Similarity=-0.011 Sum_probs=54.7
Q ss_pred EEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc----cHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS----DEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 271 ~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~----~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
.++|+|.- +..+.+++.|.+. ...++.|-..+++. .......+.+.+++++++ +.-......
T Consensus 2 kIvf~Gs~------~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ip--v~~~~~~~~ 67 (313)
T TIGR00460 2 RIVFFGTP------TFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIP--VFQPEKQRQ 67 (313)
T ss_pred EEEEECCC------HHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCC--EEecCCCCc
Confidence 35666653 4567777777654 23333333322211 001123578888888877 555555543
Q ss_pred HHHHHHHH--hCcEEEEcCCCCCCChHHHHHHHhCC
Q 016535 347 RDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (388)
Q Consensus 347 ~~l~~~~~--~adv~v~ps~~E~~~~~vlEAma~G~ 380 (388)
++..+.+. +.|++|..++..-++-.+++....|+
T Consensus 68 ~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~ 103 (313)
T TIGR00460 68 LEELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGC 103 (313)
T ss_pred HHHHHHHHhhCCCEEEEccchhhCCHHHHhhccCCE
Confidence 44444444 57788888777777777777665554
No 250
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.01 E-value=47 Score=26.45 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEEcCCCCCCChHHHHHHH-hCCceE
Q 016535 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPI 383 (388)
Q Consensus 323 ~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a----d-v~v~ps~~E~~~~~vlEAma-~G~PVI 383 (388)
+.+++.++++++. +.|.-.=...++.+.++++ | +.+.|--+-..+.++.+|++ .+.|+|
T Consensus 33 ~~~~~~a~~~g~~--v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK05395 33 ALLEEEAAELGVE--LEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVI 97 (146)
T ss_pred HHHHHHHHHcCCE--EEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEE
Confidence 3444455555543 5555444455555555544 3 55556666666777777663 456655
No 251
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=54.85 E-value=47 Score=31.46 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHHHh--cCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcE
Q 016535 281 EKAHPLQLEAFSVALRKL--DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~--~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv 358 (388)
..|.+.+++++....... +....+-.+.++|..+... ....+++++.++.|+.-+..+.+..+-+|+.++-+ |.+
T Consensus 127 ~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~-A~~ 203 (399)
T cd00316 127 SAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFDGGTTVEELRELGN-AKL 203 (399)
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhcc-CcE
Confidence 467778887777654431 1112456788999865442 34568999999999987777766677788887444 444
Q ss_pred EEEcCCCCCCChHHHHHH--HhCCceEee
Q 016535 359 GIHSMIDEHFGISVVEYM--AAGAIPIGK 385 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAm--a~G~PVI~~ 385 (388)
-+..+.. +|....|.| .+|.|.+..
T Consensus 204 nlv~~~~--~g~~~a~~l~~~~g~p~~~~ 230 (399)
T cd00316 204 NLVLCRE--SGLYLARYLEEKYGIPYILI 230 (399)
T ss_pred EEEecHh--HHHHHHHHHHHHhCCCeEEe
Confidence 4433332 345555555 388888764
No 252
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=54.51 E-value=1.5e+02 Score=26.01 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE---ccCCCHHHHHHHHHhC---
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF---YKNLLYRDLVKLLGGA--- 356 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~---~g~v~~~~l~~~~~~a--- 356 (388)
.++.++++++.+++.+ -.+.+.+........+.++..++.+.+.++|.. .|.+ .|....+++.++++..
T Consensus 113 ~~~~~~~~i~~a~~~G----~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~-~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 113 DLENAEEAIEAAKEAG----LEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD-EISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred HHHHHHHHHHHHHHCC----CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC-EEEechhcCCcCHHHHHHHHHHHHHh
Confidence 4566667777666553 345555533322113666777777777777753 5555 4666667766655542
Q ss_pred ----cEEEEcCCCCCCChH-HHHHHHhCCceEe
Q 016535 357 ----VVGIHSMIDEHFGIS-VVEYMAAGAIPIG 384 (388)
Q Consensus 357 ----dv~v~ps~~E~~~~~-vlEAma~G~PVI~ 384 (388)
.+.+|..-.-|++++ .++|+.+|.-.|-
T Consensus 188 ~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id 220 (265)
T cd03174 188 LPDVPLGLHTHNTLGLAVANSLAALEAGADRVD 220 (265)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEE
Confidence 233444333333333 5888888876653
No 253
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=54.15 E-value=12 Score=28.19 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.8
Q ss_pred hhcccCcc
Q 016535 27 HNARRNRT 34 (388)
Q Consensus 27 ~~~~~~~~ 34 (388)
+.+||++|
T Consensus 23 r~~~rq~k 30 (107)
T PF15330_consen 23 RMKQRQKK 30 (107)
T ss_pred HHHhhhcc
Confidence 45555433
No 254
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=54.11 E-value=1.7e+02 Score=26.59 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=55.3
Q ss_pred cccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC--CCCchhHHHHhhhhhceecCCCCeeEEec
Q 016535 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH--DAFPDSLLARAVDRFGVELLHPPKVVHLY 106 (388)
Q Consensus 29 ~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 106 (388)
.+..+...|++--+.- -|=.+.+..|.+.|.+.| +.|-|+.-++ .++...++-.......+..++++.+-+++
T Consensus 46 p~tG~a~viGITG~PG---aGKSTli~~L~~~l~~~G--~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~ 120 (323)
T COG1703 46 PRTGNAHVIGITGVPG---AGKSTLIEALGRELRERG--HRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP 120 (323)
T ss_pred hcCCCCcEEEecCCCC---CchHHHHHHHHHHHHHCC--cEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC
Confidence 3455666777753221 266678889999999999 6666665544 33444443332222233334444333333
Q ss_pred cccccccCCCCceehhhhhhhHHHHHHHHHhhcCCcEE-EecCC
Q 016535 107 RRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYY-FDTSG 149 (388)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Div-~~~~~ 149 (388)
.+.. +.-+. +.......++....+|+| +.+.+
T Consensus 121 srG~--------lGGlS---~at~~~i~~ldAaG~DvIIVETVG 153 (323)
T COG1703 121 SRGT--------LGGLS---RATREAIKLLDAAGYDVIIVETVG 153 (323)
T ss_pred CCcc--------chhhh---HHHHHHHHHHHhcCCCEEEEEecC
Confidence 2211 11111 223344556677789966 55554
No 255
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=54.07 E-value=1.3e+02 Score=25.24 Aligned_cols=32 Identities=13% Similarity=-0.110 Sum_probs=23.1
Q ss_pred HHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 353 ~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
...=|+++.....+. ..++.||-..|.|+|+-
T Consensus 125 ~~~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 125 FRLPDLVIVLDPRKE-HQAIREASKLGIPVIAI 156 (193)
T ss_pred ccCCCEEEEeCCccc-hHHHHHHHHcCCCEEEE
Confidence 345666666554333 67899999999999983
No 256
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=53.84 E-value=35 Score=27.71 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-----CHH----HHHHHHHh
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-----LYR----DLVKLLGG 355 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v-----~~~----~l~~~~~~ 355 (388)
..++++..++.++. +..+..+++|.. .+..+.+++...++|.+ +|.....- +.+ -+.+++++
T Consensus 18 ~e~l~~A~~La~~~---g~~v~av~~G~~-----~~~~~~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~~~ 88 (164)
T PF01012_consen 18 LEALEAARRLAEAL---GGEVTAVVLGPA-----EEAAEALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELIKE 88 (164)
T ss_dssp HHHHHHHHHHHHCT---TSEEEEEEEETC-----CCHHHHHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---CCeEEEEEEecc-----hhhHHHHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHHHh
Confidence 45777788887764 236888899932 22234677777777875 55554221 112 34556666
Q ss_pred --CcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 356 --AVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 356 --adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.|++++|+...+-.+...=|...|.|.++.
T Consensus 89 ~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 89 EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred cCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 789999987766667777778888888763
No 257
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=53.59 E-value=64 Score=27.49 Aligned_cols=75 Identities=17% Similarity=0.021 Sum_probs=44.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCCCHHHHHHHHHh
Q 016535 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 277 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
-++|.|- +.+.+.++.+.+. ....+++|+...- +.+...++.+.+++ .++| -+.|.|.. ..+-..
T Consensus 4 ~iDP~k~-e~~~~ia~~v~~~------gtDaI~VGGS~gv-t~~~~~~~v~~ik~~~~lP-vilfp~~~-----~~i~~~ 69 (205)
T TIGR01769 4 LIDPEKS-DEIEKIAKNAKDA------GTDAIMVGGSLGI-VESNLDQTVKKIKKITNLP-VILFPGNV-----NGLSRY 69 (205)
T ss_pred ccCCCcH-HHHHHHHHHHHhc------CCCEEEEcCcCCC-CHHHHHHHHHHHHhhcCCC-EEEECCCc-----cccCcC
Confidence 3677776 5555544455433 4677888865322 33444455555665 4566 55676654 234567
Q ss_pred CcEEEEcCCC
Q 016535 356 AVVGIHSMID 365 (388)
Q Consensus 356 adv~v~ps~~ 365 (388)
+|++++||..
T Consensus 70 aD~~~~~sll 79 (205)
T TIGR01769 70 ADAVFFMSLL 79 (205)
T ss_pred CCEEEEEEee
Confidence 9999999843
No 258
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=53.43 E-value=74 Score=29.52 Aligned_cols=79 Identities=10% Similarity=-0.059 Sum_probs=48.4
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.++|... .=...++.+++.+ .+.+.+++........+..+.+++.+++.|. .+.+. ++
T Consensus 154 glkv~~vGD~~--~v~~Sl~~~~~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~d 215 (338)
T PRK02255 154 DCKVVFVGDAT--QVCVSLMFIATKM---------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGG--SVLVT-----DD 215 (338)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHhC---------CCEEEEECCCccccCHHHHHHHHHHHHhcCC--eEEEE-----cC
Confidence 37899999752 2233344444433 7899999865333334445555555555553 24432 57
Q ss_pred HHHHHHhCcEEEEcCCC
Q 016535 349 LVKLLGGAVVGIHSMID 365 (388)
Q Consensus 349 l~~~~~~adv~v~ps~~ 365 (388)
+.+.++.||++....|.
T Consensus 216 ~~eav~~aDvvy~~~w~ 232 (338)
T PRK02255 216 VDEAVKDADFVYTDVWY 232 (338)
T ss_pred HHHHhCCCCEEEEcccH
Confidence 77899999988877655
No 259
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=52.98 E-value=14 Score=29.72 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEccCCC--HHHHHHHHHhCcEEEEc--------CCCCCCCh--HHHHHHHhCCceEeeC
Q 016535 321 RLQSLKDKSIELKVDGNVEFYKNLL--YRDLVKLLGGAVVGIHS--------MIDEHFGI--SVVEYMAAGAIPIGKH 386 (388)
Q Consensus 321 ~~~~l~~~~~~~~l~~~V~~~g~v~--~~~l~~~~~~adv~v~p--------s~~E~~~~--~vlEAma~G~PVI~~~ 386 (388)
|.+++++..+++|+. +..+...+ .+++.+.+..||++.+. ..++..++ .+-|+...|.+++++.
T Consensus 1 y~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~S 76 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTS 76 (154)
T ss_dssp HHHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEET
T ss_pred CHHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEC
Confidence 456778888888875 65554443 66888899999977654 12333343 4678889999999875
No 260
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=52.85 E-value=95 Score=28.32 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=47.9
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
..+.++|.+. .=...+++++..+ ++.+.+++......+.+..+.+++.+++.|. ++... +++
T Consensus 149 ~~v~~vGd~~--~v~~Sl~~~l~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~d~ 210 (304)
T TIGR00658 149 VKVVYVGDGN--NVCNSLMLAGAKL---------GMDVVVATPEGYEPDADIVKKAQEIAKENGG--SVELT-----HDP 210 (304)
T ss_pred cEEEEEeCCC--chHHHHHHHHHHc---------CCEEEEECCchhcCCHHHHHHHHHHHHHcCC--eEEEE-----cCH
Confidence 6788998762 2334445555444 6899999965433334445555555666553 24322 567
Q ss_pred HHHHHhCcEEEEcCC
Q 016535 350 VKLLGGAVVGIHSMI 364 (388)
Q Consensus 350 ~~~~~~adv~v~ps~ 364 (388)
.+.++.||++...+|
T Consensus 211 ~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 211 VEAVKGADVIYTDVW 225 (304)
T ss_pred HHHhCCCCEEEEcCc
Confidence 789999998777654
No 261
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=52.70 E-value=89 Score=25.77 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=38.0
Q ss_pred cEEEEEcccCC-CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------ccHHHHHHHHHHHHhcCCC
Q 016535 270 PAIISVAQFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK-------SDEERLQSLKDKSIELKVD 335 (388)
Q Consensus 270 ~~il~vgrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~-------~~~~~~~~l~~~~~~~~l~ 335 (388)
.+-+++||+-| ++|+..+++-+... -|--++++|+..+. .-++...-+++..++.+.+
T Consensus 4 ~rgv~~GRFqP~H~GHl~vi~~al~~--------vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~ 69 (172)
T COG1056 4 KRGVYFGRFQPLHTGHLYVIKRALSK--------VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLD 69 (172)
T ss_pred eEEEEEeccCCccHhHHHHHHHHHHh--------CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCC
Confidence 56789999996 99999888644433 26677888884332 1223445566666666654
No 262
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=52.63 E-value=23 Score=22.02 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 016535 7 LIWAVITAVLASILILASHVHNARR 31 (388)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
..| .+.+.+++.+++|++|||-=+
T Consensus 10 yl~-~~~~s~~sM~aGA~vVH~~yk 33 (47)
T PF14990_consen 10 YLK-SLVASLLSMLAGASVVHNIYK 33 (47)
T ss_pred HHH-HHHHHHHHHHhhhHHHHHHhC
Confidence 344 556667788889999987543
No 263
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=51.93 E-value=18 Score=32.71 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc-eEeeC
Q 016535 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI-PIGKH 386 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P-VI~~~ 386 (388)
..+..+.|+++..++.|.-...+..-++|||++|+. ||.+|
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred chHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecC
Confidence 356889999999999987666688889999999984 44443
No 264
>PRK06988 putative formyltransferase; Provisional
Probab=51.20 E-value=86 Score=28.73 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=51.1
Q ss_pred EEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccH-HHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDE-ERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 271 ~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~-~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
.++++|.- +..+.+++.|.+.. -++..++.- +++... .....+.+.+++++++ +........+++
T Consensus 4 kIvf~Gs~------~~a~~~L~~L~~~~----~~i~~Vvt~--~d~~~~~~~~~~v~~~A~~~gip--~~~~~~~~~~~~ 69 (312)
T PRK06988 4 RAVVFAYH------NVGVRCLQVLLARG----VDVALVVTH--EDNPTENIWFGSVAAVAAEHGIP--VITPADPNDPEL 69 (312)
T ss_pred EEEEEeCc------HHHHHHHHHHHhCC----CCEEEEEcC--CCCCccCcCCCHHHHHHHHcCCc--EEccccCCCHHH
Confidence 35666643 35566666665542 234444332 211111 1123577788887776 444445544566
Q ss_pred HHHHHh--CcEEEEcCCCCCCChHHHHHHHhCC
Q 016535 350 VKLLGG--AVVGIHSMIDEHFGISVVEYMAAGA 380 (388)
Q Consensus 350 ~~~~~~--adv~v~ps~~E~~~~~vlEAma~G~ 380 (388)
.+.++. .|++|..++..-.+-.++++...|+
T Consensus 70 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~ 102 (312)
T PRK06988 70 RAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGA 102 (312)
T ss_pred HHHHHhcCCCEEEEehhccccCHHHHhcCCCCE
Confidence 665554 7777777665566666666554443
No 265
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=51.18 E-value=48 Score=26.18 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEEcCCCCCCChHHHHHHH-hCCceE
Q 016535 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPI 383 (388)
Q Consensus 323 ~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a----d-v~v~ps~~E~~~~~vlEAma-~G~PVI 383 (388)
+.+++.+++++++ +.|.-.=...++.+.++++ | +.+.|--+-..+.++..|++ .+.|+|
T Consensus 31 ~~l~~~a~~~g~~--v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~V 95 (140)
T cd00466 31 ALLRELAAELGVE--VEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVI 95 (140)
T ss_pred HHHHHHHHHcCCE--EEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEE
Confidence 3445555555543 5555444455555555544 3 44456556566666666653 455554
No 266
>PLN03015 UDP-glucosyl transferase
Probab=50.98 E-value=77 Score=30.94 Aligned_cols=43 Identities=14% Similarity=-0.039 Sum_probs=29.0
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 338 V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+.+.+++|+.++ ++...+..+-+.. --.+++||+++|+|+|+-
T Consensus 337 l~v~~W~PQ~~v---L~h~~vg~fvtH~--GwnS~~Eai~~GvP~v~~ 379 (470)
T PLN03015 337 LVVTQWAPQVEI---LSHRSIGGFLSHC--GWSSVLESLTKGVPIVAW 379 (470)
T ss_pred eEEEecCCHHHH---hccCccCeEEecC--CchhHHHHHHcCCCEEec
Confidence 677899988774 4455443332221 224899999999999974
No 267
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=50.95 E-value=30 Score=26.56 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=23.6
Q ss_pred ceEEEeccccCCCCChh-hHHHHHHHHHhhcCCCceEEEEecC
Q 016535 35 TSVAFFHPNTNDGGGGE-RVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~-~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
|||+|+......- -.. -...-++.+.+++| |+|.+++..
T Consensus 1 Mki~fvmDpi~~i-~~~kDTT~alm~eAq~RG--hev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESI-KPYKDTTFALMLEAQRRG--HEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG---TTT-HHHHHHHHHHHTT---EEEEE-GG
T ss_pred CeEEEEeCCHHHC-CCCCChHHHHHHHHHHCC--CEEEEEEcC
Confidence 7899987766332 122 24566889999999 888887754
No 268
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=50.82 E-value=35 Score=25.69 Aligned_cols=38 Identities=13% Similarity=-0.084 Sum_probs=24.2
Q ss_pred HHHHHhCcEEEEcCCC-CCCChHHHH---HHHhCCceEeeCC
Q 016535 350 VKLLGGAVVGIHSMID-EHFGISVVE---YMAAGAIPIGKHF 387 (388)
Q Consensus 350 ~~~~~~adv~v~ps~~-E~~~~~vlE---Ama~G~PVI~~~~ 387 (388)
.+.+.+||++|..-.. ..=+-+.+| |.+.|+||++...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 3588999988865432 222234444 6689999998643
No 269
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=50.54 E-value=1e+02 Score=29.72 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC
Q 016535 280 PEKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~-l~~~~~~~~~~~~l~ivG~~~~~--~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a 356 (388)
...|.+.+++++-. +..+.. ..++-.+.++|..+.. ......++++++.++.|+..+..+.+.-+-+|+.+ +.+|
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~-~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~-~~~A 208 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSE-EKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRS-IPKA 208 (427)
T ss_pred cccHHHHHHHHHHHHhccCCC-CCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccC
Confidence 35788888877764 322210 0134567888863211 01133568999999999998888876656677765 4455
Q ss_pred cEEEEcCCCCCCChHHHHHH--HhCCceEeeC
Q 016535 357 VVGIHSMIDEHFGISVVEYM--AAGAIPIGKH 386 (388)
Q Consensus 357 dv~v~ps~~E~~~~~vlEAm--a~G~PVI~~~ 386 (388)
.+-+..+.. .+....+.| .+|.|.+..+
T Consensus 209 ~~niv~~~~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 209 QFNLVLSPW--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred cEEEEEcHh--hHHHHHHHHHHHhCCceEecC
Confidence 544443322 244555555 5788887643
No 270
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=50.00 E-value=49 Score=26.16 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEEcCCCCCCChHHHHHHH-hCCceE
Q 016535 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPI 383 (388)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a----d-v~v~ps~~E~~~~~vlEAma-~G~PVI 383 (388)
+..+.+++.++++|++ +.|.-.=...++.+.++++ | +.+.|--+-..+.++.+|++ .+.|+|
T Consensus 29 ~i~~~~~~~a~~~g~~--v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 29 DIEQKCKETAAELGVE--VEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVV 96 (140)
T ss_dssp HHHHHHHHHHHHTTEE--EEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EE
T ss_pred HHHHHHHHHHHHCCCe--EEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEE
Confidence 3445667777777765 7777666667777766654 4 56678778788889888875 466665
No 271
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=49.96 E-value=1.1e+02 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVG 311 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG 311 (388)
..+++.+....++. ++.+.+..
T Consensus 15 ~~~~~gi~~~~~~~-----~~~~~~~~ 36 (264)
T cd01574 15 SSTLAAIESAAREA-----GYAVTLSM 36 (264)
T ss_pred HHHHHHHHHHHHHC-----CCeEEEEe
Confidence 33444444444442 45554443
No 272
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=49.58 E-value=35 Score=26.57 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=25.7
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD 67 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~ 67 (388)
|+++++....+.|+-..+...++++++.+.|++
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~ 33 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHE 33 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 577777666655567778899999999999943
No 273
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=49.57 E-value=63 Score=28.15 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=46.4
Q ss_pred EEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHH
Q 016535 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL 352 (388)
Q Consensus 273 l~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~ 352 (388)
..+--++|.|-... ++++.+.+. ....+++|+...- ..+...++.+.+++..+| -|.|.|.. ..+
T Consensus 9 ~h~~liDP~k~~~~--~~~~~~~~~------gtdai~vGGS~~v-t~~~~~~~v~~ik~~~lP-vilfp~~~-----~~i 73 (232)
T PRK04169 9 LHVTLLDPDKPLPD--EALEAICES------GTDAIIVGGSDGV-TEENVDELVKAIKEYDLP-VILFPGNI-----EGI 73 (232)
T ss_pred eEEEEECCCCCCCH--HHHHHHHhc------CCCEEEEcCCCcc-chHHHHHHHHHHhcCCCC-EEEeCCCc-----ccc
Confidence 34455777774433 222334333 5677888876422 234455666666667776 56676665 234
Q ss_pred HHhCcEEEEcCCC
Q 016535 353 LGGAVVGIHSMID 365 (388)
Q Consensus 353 ~~~adv~v~ps~~ 365 (388)
-..+|++++||..
T Consensus 74 ~~~aDa~l~~svl 86 (232)
T PRK04169 74 SPGADAYLFPSVL 86 (232)
T ss_pred CcCCCEEEEEEEe
Confidence 4569999999854
No 274
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=49.15 E-value=1.1e+02 Score=28.28 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=49.8
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.|+|-.. ..=...++.+++.+ .+.+.+++......+.+..+..++.+++.|. ++.+. ++
T Consensus 156 g~~ia~vGD~~-~~v~~Sl~~~~~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~i~~~-----~d 218 (336)
T PRK03515 156 EMTLAYAGDAR-NNMGNSLLEAAALT---------GLDLRLVAPKACWPEAALVTECRALAQKNGG--NITLT-----ED 218 (336)
T ss_pred CCEEEEeCCCc-CcHHHHHHHHHHHc---------CCEEEEECCchhcCcHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 47899999642 22245556666544 7899999975333334444455566666553 34433 56
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+.++.||++...+|
T Consensus 219 ~~ea~~~aDvvytd~W 234 (336)
T PRK03515 219 IAEGVKGADFIYTDVW 234 (336)
T ss_pred HHHHhCCCCEEEecCc
Confidence 7888999998777655
No 275
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=49.15 E-value=1.3e+02 Score=27.95 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=49.3
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...|.++|-+. ..=...++.++..+ .+.+.+++......+.+..++.++.+++.|. ++.+. ++
T Consensus 155 g~kia~vGD~~-~~v~~Sl~~~~~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~d 217 (332)
T PRK04284 155 DIKFTYVGDGR-NNVANALMQGAAIM---------GMDFHLVCPKELNPDDELLNKCKEIAAETGG--KITIT-----DD 217 (332)
T ss_pred CcEEEEecCCC-cchHHHHHHHHHHc---------CCEEEEECCccccCCHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 47799999762 22234445555444 7899999975433344455555555555553 24432 56
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+.++.||++...+|
T Consensus 218 ~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 218 IDEGVKGSDVIYTDVW 233 (332)
T ss_pred HHHHhCCCCEEEECCc
Confidence 7788999998777655
No 276
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=48.06 E-value=69 Score=26.27 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=47.0
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEE------EccCCC-------HHHHHHHHHhCcEEEEc---CCCCC
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE------FYKNLL-------YRDLVKLLGGAVVGIHS---MIDEH 367 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~------~~g~v~-------~~~l~~~~~~adv~v~p---s~~E~ 367 (388)
..++.++|.--.....+..++++++..+.|....-= +...-+ .+.=.+.+.+||+.|.- -..|.
T Consensus 4 ~~~IYLAGP~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~ 83 (172)
T COG3613 4 KKKIYLAGPVFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDP 83 (172)
T ss_pred cceEEEecCcCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCC
Confidence 456777777433333456666777777776641111 111111 11223477889977753 23344
Q ss_pred CChHHHH---HHHhCCceEeeCC
Q 016535 368 FGISVVE---YMAAGAIPIGKHF 387 (388)
Q Consensus 368 ~~~~vlE---Ama~G~PVI~~~~ 387 (388)
=+-++.| |.|.|+||++...
T Consensus 84 DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 84 DSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred CCcchHHHHHHHHcCCceEEEee
Confidence 3445666 5689999998753
No 277
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=47.90 E-value=1.3e+02 Score=27.82 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=49.8
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.|+|-+. ..=...++.+++.+ .+.+.+++......+.+..++.++.+++.|. ++... ++
T Consensus 156 gl~va~vGD~~-~~v~~S~~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~d 218 (334)
T PRK12562 156 EMTLVYAGDAR-NNMGNSMLEAAALT---------GLDLRLVAPQACWPEASLVAECSALAQKHGG--KITLT-----ED 218 (334)
T ss_pred CcEEEEECCCC-CCHHHHHHHHHHHc---------CCEEEEECCcccCCcHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 37899999763 22344455555544 7899999975433344455555666666553 24322 56
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+.++.||++....|
T Consensus 219 ~~~a~~~aDvvyt~~w 234 (334)
T PRK12562 219 IAAGVKGADFIYTDVW 234 (334)
T ss_pred HHHHhCCCCEEEEcCc
Confidence 7788999998777665
No 278
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=46.63 E-value=63 Score=29.99 Aligned_cols=77 Identities=8% Similarity=-0.085 Sum_probs=53.1
Q ss_pred cEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 305 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.--+++|.-.-+...+..+.+.+...++|.+--....+.++.+++.. +...|+++.++-.. +++=+.-...+|+++
T Consensus 239 ~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~-f~~iD~~v~taCPR---i~iDd~~~f~kPlLT 314 (347)
T COG1736 239 SFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLAN-FDDIDAFVNTACPR---IPIDDGDRFKKPLLT 314 (347)
T ss_pred eEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhc-ccceeEEEEecCCC---cccchHhhhCCcccC
Confidence 44456666544556678889999999999876666678887776654 44788888775443 455666677777766
Q ss_pred e
Q 016535 385 K 385 (388)
Q Consensus 385 ~ 385 (388)
+
T Consensus 315 P 315 (347)
T COG1736 315 P 315 (347)
T ss_pred h
Confidence 5
No 279
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=46.51 E-value=22 Score=31.70 Aligned_cols=33 Identities=12% Similarity=-0.134 Sum_probs=26.4
Q ss_pred HhCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 354 ~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
..+|+++-.|..+..--.+.+|+.+|+|+|+.-
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 568999988877666667889999999999743
No 280
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.15 E-value=1.1e+02 Score=23.90 Aligned_cols=96 Identities=10% Similarity=-0.062 Sum_probs=44.4
Q ss_pred CceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccC-CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHH
Q 016535 244 DRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERL 322 (388)
Q Consensus 244 ~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~ 322 (388)
.-..|+++|.+.+.-.-.......+ ..++.++.+. .+. +.+-+.++.|+++. .+++. +++|+....+
T Consensus 29 ~GfeVi~lg~~~s~e~~v~aa~e~~-adii~iSsl~~~~~--~~~~~~~~~L~~~g---~~~i~-vivGG~~~~~----- 96 (132)
T TIGR00640 29 LGFDVDVGPLFQTPEEIARQAVEAD-VHVVGVSSLAGGHL--TLVPALRKELDKLG---RPDIL-VVVGGVIPPQ----- 96 (132)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHcC-CCEEEEcCchhhhH--HHHHHHHHHHHhcC---CCCCE-EEEeCCCChH-----
Confidence 4678899998743211111111122 3344444443 222 33334444454443 12444 5556544332
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh
Q 016535 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 323 ~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
+ .+..+++|+. .+...|. +-.++.+.+..
T Consensus 97 -~-~~~l~~~Gvd-~~~~~gt-~~~~i~~~l~~ 125 (132)
T TIGR00640 97 -D-FDELKEMGVA-EIFGPGT-PIPESAIFLLK 125 (132)
T ss_pred -h-HHHHHHCCCC-EEECCCC-CHHHHHHHHHH
Confidence 2 2335567885 5555554 45555555443
No 281
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=46.07 E-value=1e+02 Score=28.10 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=27.9
Q ss_pred HhCcEE-EEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 354 GGAVVG-IHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 354 ~~adv~-v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
+..|++ |.|...+.+.-++-+|..+|.|||+.|+
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~ 124 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDS 124 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEec
Confidence 567744 4566778888899999999999999886
No 282
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=45.55 E-value=37 Score=29.62 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC
Q 016535 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (388)
Q Consensus 288 l~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~ 335 (388)
...|+.++++... |+.+++.+|+|++.+ +.++.+++|
T Consensus 216 ~~cFe~I~~Rfg~--p~~~f~~IGDG~eEe---------~aAk~l~wP 252 (274)
T TIGR01658 216 LQCFKWIKERFGH--PKVRFCAIGDGWEEC---------TAAQAMNWP 252 (274)
T ss_pred HHHHHHHHHHhCC--CCceEEEeCCChhHH---------HHHHhcCCC
Confidence 4678888888743 799999999886443 455566665
No 283
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=45.50 E-value=79 Score=23.40 Aligned_cols=42 Identities=14% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEE
Q 016535 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339 (388)
Q Consensus 288 l~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~ 339 (388)
.+.++++.+.. |+.+++++|+.... |. +-+.+.+++. +++|.
T Consensus 52 ~~~i~~i~~~f----P~~kfiLIGDsgq~-Dp---eiY~~ia~~~--P~~i~ 93 (100)
T PF09949_consen 52 RDNIERILRDF----PERKFILIGDSGQH-DP---EIYAEIARRF--PGRIL 93 (100)
T ss_pred HHHHHHHHHHC----CCCcEEEEeeCCCc-CH---HHHHHHHHHC--CCCEE
Confidence 34555665664 99999999987554 33 3455555554 34543
No 284
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.27 E-value=2.1e+02 Score=27.77 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=83.4
Q ss_pred hccCCEEEECChhHHHHHHHHhCC-CCceEEEcCCCCCCCCccC------CCCCCCCCcEEEEEc--cc--CCCCChHHH
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVL------PLERSTEYPAIISVA--QF--RPEKAHPLQ 287 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~-~~~~~vi~ngvd~~~~~~~------~~~~~~~~~~il~vg--rl--~~~Kg~~~l 287 (388)
+...|.|....+...+.+.+.... +.+...+.+.+-....-.. ......+ ..++.+. .+ ....|.+.+
T Consensus 96 l~E~dvVfGg~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~-~~vi~v~t~gf~g~~~~G~~~a 174 (456)
T TIGR01283 96 LTEKDVIFGGEKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTG-IPVIPVDSEGFYGSKNLGNKLA 174 (456)
T ss_pred CCcCceEeCCHHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhC-CCEEEEECCCCccchhHHHHHH
Confidence 345677777777777666554322 2344444443322211100 0000011 2233332 22 235777777
Q ss_pred HHHHHHHHHHhcC------CCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE
Q 016535 288 LEAFSVALRKLDA------DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 288 l~a~~~l~~~~~~------~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 361 (388)
++++-........ ...+-.+.++|......| ..+++++.+++|++.+..+.+.-+-+|+.+.-++.--++.
T Consensus 175 ~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d---~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~ 251 (456)
T TIGR01283 175 CDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGE---FWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQ 251 (456)
T ss_pred HHHHHHHHhccCCcccccccCCCCcEEEEcCCCCccc---HHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEE
Confidence 7776654322100 011456888887543322 3589999999999977788888777777754444333332
Q ss_pred cCCCCCCChHHHHHH--HhCCceEe
Q 016535 362 SMIDEHFGISVVEYM--AAGAIPIG 384 (388)
Q Consensus 362 ps~~E~~~~~vlEAm--a~G~PVI~ 384 (388)
.+. .+....|.| .+|+|.+.
T Consensus 252 ~~~---~~~~~a~~L~e~~GiP~~~ 273 (456)
T TIGR01283 252 CSK---SMINLARKMEEKYGIPYFE 273 (456)
T ss_pred CHh---HHHHHHHHHHHHcCCCEEe
Confidence 221 224456666 56888775
No 285
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=45.25 E-value=1.6e+02 Score=29.26 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=51.6
Q ss_pred CcEEEEEeCCCCC-ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCC
Q 016535 304 RPRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGA 380 (388)
Q Consensus 304 ~~~l~ivG~~~~~-~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~ 380 (388)
+-.+.|+|..... .......+++++.+++|+.-|+.+.+.-+-+|+.+ +.+|++-|..+.. +|..+-|+| .+|+
T Consensus 158 ~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~~--~g~~~A~~Lee~fGi 234 (519)
T PRK02910 158 RPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYRE--IGESAARYLEREFGQ 234 (519)
T ss_pred CCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCHH--HHHHHHHHHHHHhCC
Confidence 4578889875321 13345678999999999998888888777788776 4455544443322 345555554 3677
Q ss_pred ceEe
Q 016535 381 IPIG 384 (388)
Q Consensus 381 PVI~ 384 (388)
|.+.
T Consensus 235 P~i~ 238 (519)
T PRK02910 235 PYVK 238 (519)
T ss_pred cccc
Confidence 7764
No 286
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=45.10 E-value=1.3e+02 Score=27.78 Aligned_cols=79 Identities=8% Similarity=-0.035 Sum_probs=48.7
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.|+|-+. ..=...++.++..+ .+.+.+++......+.+..+..++.+++.|. ++... ++
T Consensus 156 gl~ia~vGD~~-~~v~~Sl~~~~~~~---------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~--~~~~~-----~d 218 (334)
T PRK01713 156 EISYVYIGDAR-NNMGNSLLLIGAKL---------GMDVRICAPKALLPEASLVEMCEKFAKESGA--RITVT-----DD 218 (334)
T ss_pred CcEEEEECCCc-cCHHHHHHHHHHHc---------CCEEEEECCchhcCCHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 46799999753 22234455655544 7899999865333333444445555555553 34432 67
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+.++.||++...+|
T Consensus 219 ~~~a~~~aDvVyt~~w 234 (334)
T PRK01713 219 IDKAVKGVDFVHTDVW 234 (334)
T ss_pred HHHHhCCCCEEEEcce
Confidence 7889999998776543
No 287
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=44.94 E-value=1.7e+02 Score=26.74 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCcEEEccCCCHHHHHHHHH--hCcEEEEcCCCCCCChHHHHHHHhC
Q 016535 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAG 379 (388)
Q Consensus 324 ~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~E~~~~~vlEAma~G 379 (388)
.+++.+++++++ +.-...+..+++.+.+. +.|++|..++..-.+-.+++....|
T Consensus 47 ~v~~~a~~~~Ip--~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g 102 (309)
T PRK00005 47 PVKQLALEHGIP--VLQPEKLRDPEFLAELAALNADVIVVVAYGQILPKAVLDIPRLG 102 (309)
T ss_pred HHHHHHHHcCCC--EECcCCCCCHHHHHHHHhcCcCEEEEehhhcccCHHHHhcCCCC
Confidence 467777777776 43333443445555444 4666666665555555555554444
No 288
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=44.75 E-value=1.3e+02 Score=25.94 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEc
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~p 362 (388)
+.+..++.+... +.+.-.+-+-. .....+..+.++++|...-+.+-+..|.+.+..++...|.++.=
T Consensus 69 ~p~~~i~~~~~~-------gad~i~~H~Ea------~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvM 135 (220)
T PRK08883 69 PVDRIIPDFAKA-------GASMITFHVEA------SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLM 135 (220)
T ss_pred CHHHHHHHHHHh-------CCCEEEEcccC------cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEE
Confidence 567777777665 23433222221 12244677888889998888888888999999999999976665
Q ss_pred CCCCCCCh
Q 016535 363 MIDEHFGI 370 (388)
Q Consensus 363 s~~E~~~~ 370 (388)
|..-|||-
T Consensus 136 tV~PGfgG 143 (220)
T PRK08883 136 SVNPGFGG 143 (220)
T ss_pred EecCCCCC
Confidence 65556553
No 289
>PRK05380 pyrG CTP synthetase; Validated
Probab=44.30 E-value=1.8e+02 Score=28.82 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeCCCCCccH--HHHHHHHHHHHhcCCCCcEEEccCCC--HHHHHHHHHhCcEEEEcCC
Q 016535 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDE--ERLQSLKDKSIELKVDGNVEFYKNLL--YRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 289 ~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~--~~~~~l~~~~~~~~l~~~V~~~g~v~--~~~l~~~~~~adv~v~ps~ 364 (388)
+.+..+.++.......+++-++|...+..|. ...+.|+....+++..-++.+..... .++..+.+..+|.+|+|--
T Consensus 273 ~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGG 352 (533)
T PRK05380 273 SEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGG 352 (533)
T ss_pred HHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCC
Confidence 3344444443221246999999997655443 23345555555554443455544321 1124578999998888752
Q ss_pred C-----CCCChHHHHHHHhCCceEee
Q 016535 365 D-----EHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 365 ~-----E~~~~~vlEAma~G~PVI~~ 385 (388)
+ ++.-..+-+|...|+|+++.
T Consensus 353 fG~~~~~g~i~~i~~a~e~~iPiLGI 378 (533)
T PRK05380 353 FGERGIEGKILAIRYARENNIPFLGI 378 (533)
T ss_pred CCccccccHHHHHHHHHHCCCcEEEE
Confidence 1 22222355667789999874
No 290
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=43.89 E-value=2.7e+02 Score=25.84 Aligned_cols=102 Identities=14% Similarity=0.003 Sum_probs=60.0
Q ss_pred EcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCC--------CCccHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016535 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCR--------NKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (388)
Q Consensus 275 vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~--------~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~ 346 (388)
++....-..-+.+++.++.+++.. .++...|.-- .....+-++.|.+..++.|++- +....+.
T Consensus 97 IAGPCsiEs~e~~~~~A~~lk~~g------a~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v---~tev~d~ 167 (335)
T PRK08673 97 IAGPCSVESEEQILEIARAVKEAG------AQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPI---VTEVMDP 167 (335)
T ss_pred EEecCccCCHHHHHHHHHHHHHhc------hhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcE---EEeeCCH
Confidence 333444456777888888876653 1221111100 0002344567888899999872 2333444
Q ss_pred HHHHHHHHhCcEEEEcCCC-CCCChHHHHHHHhCCceEeeC
Q 016535 347 RDLVKLLGGAVVGIHSMID-EHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~-E~~~~~vlEAma~G~PVI~~~ 386 (388)
+++..+...+|++-.+|.. .+++ -+-++...|+||+-++
T Consensus 168 ~~~~~l~~~vd~lqIgAr~~~N~~-LL~~va~~~kPViLk~ 207 (335)
T PRK08673 168 RDVELVAEYVDILQIGARNMQNFD-LLKEVGKTNKPVLLKR 207 (335)
T ss_pred HHHHHHHHhCCeEEECcccccCHH-HHHHHHcCCCcEEEeC
Confidence 6666666669988888753 4443 2446667899999765
No 291
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.55 E-value=1e+02 Score=23.60 Aligned_cols=95 Identities=8% Similarity=0.003 Sum_probs=44.5
Q ss_pred ceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHH
Q 016535 245 RIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQS 324 (388)
Q Consensus 245 ~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~ 324 (388)
-..+++.|.+.+.-.-.......+ ..++.++... ......+-+.+++++++. .+++.+.+.|..+ . +
T Consensus 27 G~~vi~lG~~vp~e~~~~~a~~~~-~d~V~iS~~~-~~~~~~~~~~~~~L~~~~---~~~i~i~~GG~~~-~-------~ 93 (122)
T cd02071 27 GFEVIYTGLRQTPEEIVEAAIQED-VDVIGLSSLS-GGHMTLFPEVIELLRELG---AGDILVVGGGIIP-P-------E 93 (122)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcC-CCEEEEcccc-hhhHHHHHHHHHHHHhcC---CCCCEEEEECCCC-H-------H
Confidence 456788887643221111111122 2233333322 233344445555665553 1255655554432 1 2
Q ss_pred HHHHHHhcCCCCcEEEccCCCHHHHHHHHH
Q 016535 325 LKDKSIELKVDGNVEFYKNLLYRDLVKLLG 354 (388)
Q Consensus 325 l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~ 354 (388)
-.+...++|++ =.|.+..+.+++..++.
T Consensus 94 ~~~~~~~~G~d--~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 94 DYELLKEMGVA--EIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHCCCC--EEECCCCCHHHHHHHHh
Confidence 23444567875 34555566677776654
No 292
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=43.54 E-value=2.8e+02 Score=25.97 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=40.0
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC--CCHHHHHHHHHh----CcEEEEcCCCC-CCChHHHHH
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN--LLYRDLVKLLGG----AVVGIHSMIDE-HFGISVVEY 375 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--v~~~~l~~~~~~----adv~v~ps~~E-~~~~~vlEA 375 (388)
|+-.+++.|-|-+--- .........+++.++ +|+.++-. ....-+..+++. -|.|+.|...- -.|....|-
T Consensus 135 Pdk~VVF~avGFETTa-P~~A~~i~~a~~~~~-~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~~ 212 (369)
T TIGR00075 135 PDRKVVFFAIGFETTA-PTTASTLLSAKAEDI-NNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIGAKPYAP 212 (369)
T ss_pred CCCeEEEEecCchhcc-HHHHHHHHHHHHcCC-CcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEeccchhHH
Confidence 5656666665533211 112222333333444 36555422 123455555544 36788775432 244444444
Q ss_pred H--HhCCceEeeCC
Q 016535 376 M--AAGAIPIGKHF 387 (388)
Q Consensus 376 m--a~G~PVI~~~~ 387 (388)
+ -+++|++.+.+
T Consensus 213 l~~~y~~P~VVaGF 226 (369)
T TIGR00075 213 IAEKYKIPIVIAGF 226 (369)
T ss_pred HHHHcCCCeEEecc
Confidence 4 35777776654
No 293
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=43.32 E-value=70 Score=28.25 Aligned_cols=39 Identities=18% Similarity=-0.040 Sum_probs=30.8
Q ss_pred HHHHHHHH--hCcEEEEcCC-CCCCChHHHHHHH--hCCceEee
Q 016535 347 RDLVKLLG--GAVVGIHSMI-DEHFGISVVEYMA--AGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~--~adv~v~ps~-~E~~~~~vlEAma--~G~PVI~~ 385 (388)
.++.+..+ ..|+++-.|. .-.|.--++++|+ +..|+|-.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 36777888 8999998887 4558888999998 66788754
No 294
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=43.30 E-value=1.6e+02 Score=27.33 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=48.7
Q ss_pred CCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 268 ~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
+...+.|+|.+. ..=...++.++..+ .+.+.+++......+.+..+..++.+++.|. ++.+. +
T Consensus 154 ~g~~va~vGd~~-~~v~~Sl~~~~~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~ 216 (331)
T PRK02102 154 KGLKLAYVGDGR-NNMANSLMVGGAKL---------GMDVRICAPKELWPEEELVALAREIAKETGA--KITIT-----E 216 (331)
T ss_pred CCCEEEEECCCc-ccHHHHHHHHHHHc---------CCEEEEECCcccccCHHHHHHHHHHHHHcCC--eEEEE-----c
Confidence 347889999763 22233344444433 6899999975433344445555555655553 24432 5
Q ss_pred HHHHHHHhCcEEEEcCC
Q 016535 348 DLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~ 364 (388)
++.+.++.||++..-.|
T Consensus 217 d~~ea~~~aDvvyt~~w 233 (331)
T PRK02102 217 DPEEAVKGADVIYTDVW 233 (331)
T ss_pred CHHHHhCCCCEEEEcCc
Confidence 67788999998777644
No 295
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=43.03 E-value=64 Score=20.86 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred cEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 305 ~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
..+.+.|..+ ......++++++++|-. +. ...+ ..++.+|.++....- ...+|...|.|+|.
T Consensus 2 ~~~~i~g~~~----~~~~~~l~~~i~~~Gg~--v~--~~~~--------~~~thvI~~~~~~~~--~~~~~~~~~~~iV~ 63 (72)
T cd00027 2 LTFVITGDLP----SEERDELKELIEKLGGK--VT--SSVS--------KKTTHVIVGSDAGPK--KLLKAIKLGIPIVT 63 (72)
T ss_pred CEEEEEecCC----CcCHHHHHHHHHHcCCE--Ee--cccc--------CCceEEEECCCCCch--HHHHHHHcCCeEec
Confidence 5677888642 12234888888888742 33 2221 456666666433221 17888999999997
Q ss_pred eCC
Q 016535 385 KHF 387 (388)
Q Consensus 385 ~~~ 387 (388)
+++
T Consensus 64 ~~W 66 (72)
T cd00027 64 PEW 66 (72)
T ss_pred HHH
Confidence 653
No 296
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=42.93 E-value=2.2e+02 Score=24.49 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=54.0
Q ss_pred CCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcC---------CCC-CCChHHHHHHHhCCceE
Q 016535 314 RNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM---------IDE-HFGISVVEYMAAGAIPI 383 (388)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps---------~~E-~~~~~vlEAma~G~PVI 383 (388)
..+++..|.++.++..+++|+...=.-+..-|.+++...+.++|+....- +.| +.--.+.|+...|+|.|
T Consensus 43 ~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~Yi 122 (224)
T COG3340 43 VDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYI 122 (224)
T ss_pred cccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceE
Confidence 45557789999999999999862222345567899999999999666541 233 23334789999999999
Q ss_pred eeCCC
Q 016535 384 GKHFK 388 (388)
Q Consensus 384 ~~~~~ 388 (388)
+...|
T Consensus 123 G~SAG 127 (224)
T COG3340 123 GWSAG 127 (224)
T ss_pred EeccC
Confidence 87643
No 297
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=42.82 E-value=38 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHh-CcEEEEcC----CCCCCCh--HHHHHHHhCCceEee
Q 016535 351 KLLGG-AVVGIHSM----IDEHFGI--SVVEYMAAGAIPIGK 385 (388)
Q Consensus 351 ~~~~~-adv~v~ps----~~E~~~~--~vlEAma~G~PVI~~ 385 (388)
..+.. +|++|.-- ..|+-|+ .+.||++.|+||++.
T Consensus 88 ~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 88 RALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 33444 88777652 2345554 488999999999985
No 298
>PLN02285 methionyl-tRNA formyltransferase
Probab=42.40 E-value=2.1e+02 Score=26.54 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=50.1
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccH----HHHHHHHHHHHhcCCCCcEEEc-cC
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDE----ERLQSLKDKSIELKVDGNVEFY-KN 343 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~----~~~~~l~~~~~~~~l~~~V~~~-g~ 343 (388)
+..++|+|.- +..+..++.|.+..++...++.++.|-+.+++..+ -....+.+.+++++++-.+.+. ..
T Consensus 6 ~~kI~f~Gt~------~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~ 79 (334)
T PLN02285 6 KKRLVFLGTP------EVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEK 79 (334)
T ss_pred ccEEEEEECC------HHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccc
Confidence 3667788764 34444555554431111123444444333322100 0001266777777776333322 23
Q ss_pred CCHHHHHHHHH--hCcEEEEcCCCCCCChHHHHHHHhCC
Q 016535 344 LLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (388)
Q Consensus 344 v~~~~l~~~~~--~adv~v~ps~~E~~~~~vlEAma~G~ 380 (388)
...+++.+.+. ..|+.|..++.--.+-.++++...|+
T Consensus 80 ~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~ 118 (334)
T PLN02285 80 AGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGT 118 (334)
T ss_pred cCCHHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCE
Confidence 33344444444 46777766655555555665544443
No 299
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.25 E-value=13 Score=29.12 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcccCccce
Q 016535 9 WAVITAVLASILILASHV-HNARRNRTTS 36 (388)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 36 (388)
| ||+++++.++++++++ -..+++|+.+
T Consensus 2 W-~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 W-VLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred e-eeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 4444544444444444 4444554444
No 300
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=42.19 E-value=1.2e+02 Score=26.68 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=37.0
Q ss_pred CCCcEEEccC--CCHHHHHHHHHhCcEEEE-cCCCCCCChH--HHHHHHhCCceEeeCC
Q 016535 334 VDGNVEFYKN--LLYRDLVKLLGGAVVGIH-SMIDEHFGIS--VVEYMAAGAIPIGKHF 387 (388)
Q Consensus 334 l~~~V~~~g~--v~~~~l~~~~~~adv~v~-ps~~E~~~~~--vlEAma~G~PVI~~~~ 387 (388)
+.++|.+.|. ++.+++.+....||++|. -+...-.|.. +.+|-..|.++|--|.
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~ 207 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNL 207 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECC
Confidence 3467888887 456788888999997654 4444333333 5678889999886553
No 301
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=42.07 E-value=2.1e+02 Score=25.95 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC-CCHHHHHHHHHhCcEEEE
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-LLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-v~~~~l~~~~~~adv~v~ 361 (388)
+.+...+|++.+.++. ++..++++++ |.++.++..+ .. .+.+.+.+. -+.+|+. +++.||.++.
T Consensus 189 ~~~Yy~~Ai~~i~~~~----~~~~f~ifSD-----D~~w~k~~l~---~~--~~~~~~~~~~~~~~Dl~-lms~C~~~Ii 253 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKV----KNPKFFIFSD-----DIEWCKENLK---FS--NGDVYFSGNNSPYEDLY-LMSQCKHFII 253 (298)
T ss_pred CHHHHHHHHHHHHHhC----CCCEEEEEcC-----CHHHHHHHHh---hc--CCcEEEECCCCHHHHHH-HHHhCCcEEE
Confidence 3577889999998885 7899999996 6555443322 21 234566654 4567776 7899998887
Q ss_pred c
Q 016535 362 S 362 (388)
Q Consensus 362 p 362 (388)
+
T Consensus 254 s 254 (298)
T PF01531_consen 254 S 254 (298)
T ss_pred C
Confidence 7
No 302
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.05 E-value=88 Score=27.11 Aligned_cols=54 Identities=9% Similarity=0.064 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHH-hcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 364 (388)
..-.+++|+...- ..+..+++.+.++ +.++| -+.|.|.. +. +-..+|.+++||.
T Consensus 41 GTDaImIGGS~gv-t~~~~~~~v~~ik~~~~lP-vilfP~~~--~~---is~~aDavff~sv 95 (240)
T COG1646 41 GTDAIMIGGSDGV-TEENVDNVVEAIKERTDLP-VILFPGSP--SG---ISPYADAVFFPSV 95 (240)
T ss_pred CCCEEEECCcccc-cHHHHHHHHHHHHhhcCCC-EEEecCCh--hc---cCccCCeEEEEEE
Confidence 5677888976433 2233444444444 77776 56777765 22 3458999999974
No 303
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=41.77 E-value=89 Score=28.89 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=19.2
Q ss_pred hCcEEEE-cCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 355 GAVVGIH-SMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 355 ~adv~v~-ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
..|.++. |...+...-.+-+|+..|.|||+.|+
T Consensus 80 ~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 80 GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 3554443 33334444556677777888877664
No 304
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=41.75 E-value=42 Score=22.33 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=11.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 016535 1 MAPYGILIWAVITAVLASILILAS 24 (388)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (388)
|.-||.-.| ++++.++|.++.
T Consensus 12 MGgyafyVW---lA~~~tll~l~~ 32 (67)
T COG3114 12 MGGYAFYVW---LAVGMTLLPLAV 32 (67)
T ss_pred ccCchHHHH---HHHHHHHHHHHH
Confidence 444555444 666666666643
No 305
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=41.71 E-value=1.7e+02 Score=22.87 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=55.7
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~v~~~ 347 (388)
++.+...+- .++++.+.+.+.++ +.+.+.+. +.+..+.+++.....+. ++++ .|. +
T Consensus 24 ~f~v~~Lsa---~~n~~~L~~q~~~f---------~p~~v~i~------~~~~~~~l~~~~~~~~~--~~~v~~G~---~ 80 (129)
T PF02670_consen 24 KFEVVALSA---GSNIEKLAEQAREF---------KPKYVVIA------DEEAYEELKKALPSKGP--GIEVLSGP---E 80 (129)
T ss_dssp TEEEEEEEE---SSTHHHHHHHHHHH---------T-SEEEES------SHHHHHHHHHHHHHTTS--SSEEEESH---H
T ss_pred ceEEEEEEc---CCCHHHHHHHHHHh---------CCCEEEEc------CHHHHHHHHHHhhhcCC--CCEEEeCh---H
Confidence 355555443 68999998888877 45667776 66656677666543232 3444 454 7
Q ss_pred HHHHHHH--hCcEEEEcCCCCCCCh-HHHHHHHhCCceE
Q 016535 348 DLVKLLG--GAVVGIHSMIDEHFGI-SVVEYMAAGAIPI 383 (388)
Q Consensus 348 ~l~~~~~--~adv~v~ps~~E~~~~-~vlEAma~G~PVI 383 (388)
.+.++.. .+|+.|....-- -|+ +.++|+..|+-+-
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~-aGL~pt~~Ai~~gk~ia 118 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGF-AGLKPTLAAIKAGKDIA 118 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSG-GGHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCCEEEEeCccc-chHHHHHHHHHCCCeEE
Confidence 7777776 677777764432 233 3688888887654
No 306
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.40 E-value=2.3e+02 Score=24.77 Aligned_cols=80 Identities=6% Similarity=-0.170 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 360 (388)
..|.+.+++.+... .+.-+++=+-+. +..+..+++.+.++++|+..-+.+....|.+++..+.+.+|-++
T Consensus 87 ~~~~~~~i~~~~~~---------Gadgvii~dlp~-e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 87 VDSLDNFLNMARDV---------GADGVLFPDLLI-DYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hhCHHHHHHHHHHc---------CCCEEEECCCCC-CcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 45777777777655 333333321110 11244568889999999986666667777889999999999666
Q ss_pred EcCCCCCCCh
Q 016535 361 HSMIDEHFGI 370 (388)
Q Consensus 361 ~ps~~E~~~~ 370 (388)
+-|..-++|-
T Consensus 157 ~msv~~~~g~ 166 (244)
T PRK13125 157 YYGLRPATGV 166 (244)
T ss_pred EEEeCCCCCC
Confidence 4455545443
No 307
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=41.02 E-value=1.7e+02 Score=25.37 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCC
Q 016535 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFG 369 (388)
Q Consensus 322 ~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~ 369 (388)
..+..+.++++|....+.+-+..|-+.+..++...|.++.=|..-|||
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 346778888889988899988889999999999999666555444544
No 308
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.95 E-value=1.8e+02 Score=22.91 Aligned_cols=102 Identities=11% Similarity=-0.031 Sum_probs=51.1
Q ss_pred ceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHH
Q 016535 245 RIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQS 324 (388)
Q Consensus 245 ~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~ 324 (388)
-..|++-|.|.+.-+-.......+ ..++.++.+.. .....+-+..+.++++. .+-..+++|++..- ..+..++
T Consensus 29 GfeVi~LG~~v~~e~~v~aa~~~~-adiVglS~l~~-~~~~~~~~~~~~l~~~g----l~~~~vivGG~~vi-~~~d~~~ 101 (134)
T TIGR01501 29 GFNVVNLGVLSPQEEFIKAAIETK-ADAILVSSLYG-HGEIDCKGLRQKCDEAG----LEGILLYVGGNLVV-GKQDFPD 101 (134)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcC-CCEEEEecccc-cCHHHHHHHHHHHHHCC----CCCCEEEecCCcCc-ChhhhHH
Confidence 466788888753221111111122 33555554432 33344445555565553 32234667764211 0111223
Q ss_pred HHHHHHhcCCCCcEEEccCCCHHHHHHHHHh
Q 016535 325 LKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 325 l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
..+..+++|+. -.|-+.-+.+++.+++..
T Consensus 102 ~~~~l~~~Gv~--~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 102 VEKRFKEMGFD--RVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHHcCCC--EEECcCCCHHHHHHHHHH
Confidence 45566778875 456655677888877654
No 309
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=40.74 E-value=91 Score=27.10 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=40.6
Q ss_pred EEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCCCHHHHHH
Q 016535 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 273 l~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~v~~~~l~~ 351 (388)
+.+--++|.|-... ++++.+.+. ..-.+++|+.. . ....++..+.+++ .++| -|.|.|.. +.+
T Consensus 9 ~h~~liDPdK~~~~--~~~~~~~~~------gtDai~VGGS~--~-~~~~d~vv~~ik~~~~lP-vilfPg~~--~~v-- 72 (230)
T PF01884_consen 9 LHATLIDPDKPNPE--EALEAACES------GTDAIIVGGSD--T-GVTLDNVVALIKRVTDLP-VILFPGSP--SQV-- 72 (230)
T ss_dssp -EEEEE-TTSS-HH--HHHHHHHCT------T-SEEEEE-ST--H-CHHHHHHHHHHHHHSSS--EEEETSTC--CG---
T ss_pred ceEEEECCCCCCcH--HHHHHHHhc------CCCEEEECCCC--C-ccchHHHHHHHHhcCCCC-EEEeCCCh--hhc--
Confidence 45666788875543 444444332 67778888764 1 2223333333333 5555 67887876 333
Q ss_pred HHHhCcEEEEcCCC
Q 016535 352 LLGGAVVGIHSMID 365 (388)
Q Consensus 352 ~~~~adv~v~ps~~ 365 (388)
-..||++++||..
T Consensus 73 -s~~aDail~~svl 85 (230)
T PF01884_consen 73 -SPGADAILFPSVL 85 (230)
T ss_dssp --TTSSEEEEEEET
T ss_pred -CcCCCEEEEEEEe
Confidence 4679999999753
No 310
>PRK06849 hypothetical protein; Provisional
Probab=40.73 E-value=48 Score=31.37 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=29.8
Q ss_pred CccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 32 ~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
|++|+|++. ||.......+++.|.+.| ++|++.....
T Consensus 2 ~~~~~VLI~-------G~~~~~~l~iar~l~~~G--~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLIT-------GARAPAALELARLFHNAG--HTVILADSLK 38 (389)
T ss_pred CCCCEEEEe-------CCCcHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 457888887 566668899999999999 8888876653
No 311
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=40.57 E-value=1.9e+02 Score=23.22 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=4.6
Q ss_pred HHHHHHhCCceEee
Q 016535 372 VVEYMAAGAIPIGK 385 (388)
Q Consensus 372 vlEAma~G~PVI~~ 385 (388)
-+-.|-.|+||-+.
T Consensus 99 S~vqMp~g~pvatv 112 (150)
T PF00731_consen 99 SIVQMPSGVPVATV 112 (150)
T ss_dssp HHHT--TTS--EE-
T ss_pred HHHhccCCCCceEE
Confidence 34455566665443
No 312
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=40.56 E-value=46 Score=18.66 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 016535 18 SILILASHV 26 (388)
Q Consensus 18 ~~~~~~~~~ 26 (388)
.+++++..+
T Consensus 19 ~l~~~~~~~ 27 (34)
T TIGR01167 19 LLLGLGGLL 27 (34)
T ss_pred HHHHHHHHH
Confidence 344444444
No 313
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=40.51 E-value=1.6e+02 Score=30.22 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=54.7
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-cHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHH
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS-DEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV 350 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~-~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~ 350 (388)
++|.|.- +..+.+++.|.+. ...++.|-..+++. .......+.+.+++++++ +.-...+..++..
T Consensus 3 ivf~g~~------~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip--~~~~~~~~~~~~~ 68 (660)
T PRK08125 3 AVVFAYH------DIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIP--VYAPEDVNHPLWV 68 (660)
T ss_pred EEEECCC------HHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCc--EEeeCCCCcHHHH
Confidence 5566642 5667777777654 23333222222211 111223577888888887 5545555555555
Q ss_pred HHHH--hCcEEEEcCCCCCCChHHHHHHHhCCc
Q 016535 351 KLLG--GAVVGIHSMIDEHFGISVVEYMAAGAI 381 (388)
Q Consensus 351 ~~~~--~adv~v~ps~~E~~~~~vlEAma~G~P 381 (388)
+.++ +.|++|..++..-.+-.+++....|+-
T Consensus 69 ~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~i 101 (660)
T PRK08125 69 ERIRELAPDVIFSFYYRNLLSDEILQLAPAGAF 101 (660)
T ss_pred HHHHhcCCCEEEEccccccCCHHHHhhcCCCEE
Confidence 5554 567777777766777777776655543
No 314
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=39.99 E-value=3.3e+02 Score=25.72 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEE---ccCCCHHHHHHHHHhC----cEEEEcCCCCCCChH---HHHHHHhCCceE
Q 016535 318 DEERLQSLKDKSIELKVDGNVEF---YKNLLYRDLVKLLGGA----VVGIHSMIDEHFGIS---VVEYMAAGAIPI 383 (388)
Q Consensus 318 ~~~~~~~l~~~~~~~~l~~~V~~---~g~v~~~~l~~~~~~a----dv~v~ps~~E~~~~~---vlEAma~G~PVI 383 (388)
+.++..++.+.+.+.|.. .|.+ .|....+++.++++.. ++-+--.....+|+. .++|+.+|.-.|
T Consensus 143 ~~~~l~~~~~~~~~~Ga~-~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 143 DLDFLIEFAKAAEEAGAD-RVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred CHHHHHHHHHHHHhCCCC-EEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 445555555555555542 3433 2444444444433321 222222223334443 355666665544
No 315
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=39.96 E-value=2.8e+02 Score=26.68 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc------------------c
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY------------------K 342 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~------------------g 342 (388)
..|.+.+++++-...........+-.+.++|...... ...++++++.++.|++.+..+. |
T Consensus 132 ~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~--~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~g 209 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTP--GDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKG 209 (428)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCc--cCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCC
Confidence 4677777776654322211001345677887654321 1346899999999998666652 4
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHH--hCCceEeeC
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAIPIGKH 386 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma--~G~PVI~~~ 386 (388)
.-+-+|+.+ +.+|.+-|..+. ..+..+.|+|. +|+|.+...
T Consensus 210 g~~~e~i~~-~~~A~lniv~~~--~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 210 GTTLEEIRD-AGNAKATIALGE--YSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred CCcHHHHHH-hccCcEEEEECh--hhhHHHHHHHHHHHCCCeeecC
Confidence 455677665 344444443322 34556666654 899987543
No 316
>PRK12862 malic enzyme; Reviewed
Probab=39.54 E-value=1.1e+02 Score=32.04 Aligned_cols=37 Identities=22% Similarity=0.074 Sum_probs=30.9
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
++.+.++.+|+++-.|....|.--+++.|+ ..|+|-.
T Consensus 254 ~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~-~~piifa 290 (763)
T PRK12862 254 TLAEVIEGADVFLGLSAAGVLKPEMVKKMA-PRPLIFA 290 (763)
T ss_pred CHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEEe
Confidence 578888899999999885568888999998 7888854
No 317
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=39.36 E-value=1.1e+02 Score=27.15 Aligned_cols=87 Identities=7% Similarity=0.050 Sum_probs=59.2
Q ss_pred EEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--CHHH
Q 016535 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--LYRD 348 (388)
Q Consensus 271 ~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v--~~~~ 348 (388)
+++|+|-+.-.-|...+.+.+.++++++ +..++++.+..........+...+...++|.+ +.-+|.- ++.+
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~-----~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D--~iTlGNH~fD~ge 73 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEY-----KIDFVIANGENAAGGKGITPKIAKELLSAGVD--VITMGNHTWDKKE 73 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHC-----CCCEEEECCccccCCCCCCHHHHHHHHhcCCC--EEEecccccCcch
Confidence 3789999999999999999999999886 44566663322211111234666777777875 5555664 3557
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+++...+-.+.|..
T Consensus 74 l~~~l~~~~~~l~~aN 89 (255)
T cd07382 74 ILDFIDEEPRLLRPAN 89 (255)
T ss_pred HHHHHhcCcCceEeee
Confidence 8888988875565543
No 318
>PRK08005 epimerase; Validated
Probab=38.65 E-value=2.1e+02 Score=24.56 Aligned_cols=48 Identities=2% Similarity=-0.200 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCC
Q 016535 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFG 369 (388)
Q Consensus 322 ~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~ 369 (388)
..+..+.++++|....+-+-+..|-+.+..++...|.++.=|..-||+
T Consensus 95 ~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~ 142 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGR 142 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCc
Confidence 346777888888888888888888899999999999666555554544
No 319
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=38.26 E-value=80 Score=22.98 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=35.4
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 364 (388)
++++|.|--. +.-...++++..++.|++ +.+.. .+-.++......+|+++.++.
T Consensus 6 LvvCgsG~~T-S~m~~~ki~~~l~~~gi~--~~v~~-~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 6 IVACGGAVAT-STMAAEEIKELCQSHNIP--VELIQ-CRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEECCCchhH-HHHHHHHHHHHHHHCCCe--EEEEE-ecHHHHhhhcCCCCEEEECCc
Confidence 5666665311 122357888989998887 44443 444677777788998888754
No 320
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.24 E-value=2.3e+02 Score=28.08 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=53.1
Q ss_pred CcEEEEEeCCCCC-ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCC
Q 016535 304 RPRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGA 380 (388)
Q Consensus 304 ~~~l~ivG~~~~~-~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~ 380 (388)
+-.+.|+|..+.. .......+++++.+++|++-|+.|.+.-+-+|+.++ .+|++-|.++.. .|....++| .+|+
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l-~~A~~NIv~~~~--~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARL-PAAWLNICPYRE--IGLMAAEYLKEKFGQ 234 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhc-ccCcEEEEechH--HHHHHHHHHHHHhCC
Confidence 4568888875321 123445699999999999988888887777887764 677776665443 344555555 5688
Q ss_pred ceEe
Q 016535 381 IPIG 384 (388)
Q Consensus 381 PVI~ 384 (388)
|.+.
T Consensus 235 P~i~ 238 (511)
T TIGR01278 235 PYIT 238 (511)
T ss_pred Cccc
Confidence 8764
No 321
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=37.88 E-value=96 Score=28.46 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEec
Q 016535 11 VITAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (388)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~ 75 (388)
++++.++.+|+++. =+.+...|+++.|+.... .-..++..+.+++.+.|. +.+++.++
T Consensus 6 ~~~~~~~~~~~~~~-----~~~~~~~Igvv~~~~~~~-f~~~~~~gi~~~a~~~g~-~~~~~~~~ 63 (330)
T PRK15395 6 TLSALMASMLFGAA-----AAAADTRIGVTIYKYDDN-FMSVVRKAIEKDAKAAPD-VQLLMNDS 63 (330)
T ss_pred HHHHHHHHHhhcch-----hhcCCceEEEEEecCcch-HHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 44555556666554 234467899998876544 666777778888888752 45555444
No 322
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=37.74 E-value=2.1e+02 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=34.1
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceE
Q 016535 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (388)
Q Consensus 337 ~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI 383 (388)
.+.+++++|+++..+++-.||+-+. +.|. +.+=|.-+|+|-|
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfV--RGED---SfVRAqwAgkPFv 286 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFV--RGED---SFVRAQWAGKPFV 286 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceE--ecch---HHHHHHHhCCCce
Confidence 4778999999999999999996444 4555 6778888888865
No 323
>PRK09271 flavodoxin; Provisional
Probab=37.66 E-value=57 Score=26.40 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=25.7
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEE
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~ 73 (388)
|+|+++ |....|-.++++..+++.|.+.| +++.+.
T Consensus 1 mkv~Iv--Y~S~tGnTe~~A~~ia~~l~~~g--~~v~~~ 35 (160)
T PRK09271 1 MRILLA--YASLSGNTREVAREIEERCEEAG--HEVDWV 35 (160)
T ss_pred CeEEEE--EEcCCchHHHHHHHHHHHHHhCC--CeeEEE
Confidence 566655 33344689999999999999999 665544
No 324
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=37.62 E-value=1e+02 Score=28.26 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh--CcEEEEcCCC-CCCChHHHHHHHhCCceEee
Q 016535 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMID-EHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 324 ~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~-E~~~~~vlEAma~G~PVI~~ 385 (388)
..++.+++.+.+ .. .+++.++++. .|+++..+.. -.+.+ ++.|+.+|++|+|-
T Consensus 42 ~a~~~a~~~~~~-----~~---~~~~~~ll~~~~iD~V~Iatp~~~H~e~-~~~AL~aGkhVl~E 97 (342)
T COG0673 42 RAEAFAEEFGIA-----KA---YTDLEELLADPDIDAVYIATPNALHAEL-ALAALEAGKHVLCE 97 (342)
T ss_pred HHHHHHHHcCCC-----cc---cCCHHHHhcCCCCCEEEEcCCChhhHHH-HHHHHhcCCEEEEc
Confidence 577778887765 11 2566677776 4766666543 34444 48999999999974
No 325
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.57 E-value=2.3e+02 Score=25.25 Aligned_cols=22 Identities=9% Similarity=-0.001 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcCCCceEEEEecCC
Q 016535 54 LWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 54 ~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
=.++++.|.++| ++++++....
T Consensus 19 G~~~A~~lA~~g--~~liLvaR~~ 40 (265)
T COG0300 19 GAELAKQLARRG--YNLILVARRE 40 (265)
T ss_pred HHHHHHHHHHCC--CEEEEEeCcH
Confidence 357899999999 8888777553
No 326
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=37.55 E-value=1.8e+02 Score=27.21 Aligned_cols=64 Identities=6% Similarity=-0.084 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 364 (388)
..++.++..+ .+.+++++........+..+..++.+++.|.. +.+. +++.+.++.||++...+|
T Consensus 191 ~Sl~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~--~~~~-----~d~~ea~~~aDvvyt~~w 254 (357)
T TIGR03316 191 QGIIGLMTRF---------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGK--FNIV-----NSMDEAFKDADIVYPKSW 254 (357)
T ss_pred HHHHHHHHHc---------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCe--EEEE-----cCHHHHhCCCCEEEECCe
Confidence 3466666655 78999999653332334444445556665543 4432 677889999998877754
No 327
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=37.55 E-value=1.5e+02 Score=22.61 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCc-EEEccCCCHHHHHHHHHhC
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN-VEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~-V~~~g~v~~~~l~~~~~~a 356 (388)
|.+-.+.+|. +..+..|.+...+.++++|+.-. +.+....+.+++.+.+...
T Consensus 30 P~Laii~vg~--d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~l 82 (117)
T PF00763_consen 30 PKLAIILVGD--DPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKL 82 (117)
T ss_dssp -EEEEEEES----HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHH
T ss_pred cEEEEEecCC--ChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4455555554 34455699999999999999633 4455777888888877764
No 328
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=37.34 E-value=1.2e+02 Score=26.63 Aligned_cols=93 Identities=11% Similarity=-0.106 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCC-cEEEc-cCCCHHHHHHHHHhCcE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG-NVEFY-KNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~-~V~~~-g~v~~~~l~~~~~~adv 358 (388)
.|=...+..|++.+..-. ..-.+.++|. .......+++.++..|-.- +=+|+ |..++ .+...+..=|+
T Consensus 52 ~kT~~~L~~Aa~~i~~i~----~~~~Il~Vst-----r~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN-~~~~~f~~P~l 121 (249)
T PTZ00254 52 AKTWEKLKLAARVIAAIE----NPADVVVVSS-----RPYGQRAVLKFAQYTGASAIAGRFTPGTFTN-QIQKKFMEPRL 121 (249)
T ss_pred HHHHHHHHHHHHHHHHHh----CCCcEEEEEc-----CHHHHHHHHHHHHHhCCeEECCcccCCCCCC-ccccccCCCCE
Confidence 455566666666664431 1344567786 3344556777777665421 01344 33332 23344555666
Q ss_pred EEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 359 GIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
+|..... .=..++.||...|.|||+
T Consensus 122 lIV~Dp~-~d~qAI~EA~~lnIPvIa 146 (249)
T PTZ00254 122 LIVTDPR-TDHQAIREASYVNIPVIA 146 (249)
T ss_pred EEEeCCC-cchHHHHHHHHhCCCEEE
Confidence 6655322 235689999999999997
No 329
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.27 E-value=2.1e+02 Score=27.77 Aligned_cols=54 Identities=4% Similarity=-0.039 Sum_probs=28.8
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcC
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK 333 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~ 333 (388)
+-.|+.+|..+ .-+-+.+++-++.|.+.. -+..++++| +.+..+++++..++.+
T Consensus 121 PDIILLaGGtD-GG~~e~~l~NA~~La~~~----~~~pIIyAG------N~~a~~~V~~il~~~~ 174 (463)
T TIGR01319 121 LDIILFAGGTD-GGEEECGIHNAKMLAEHG----LDCAIIVAG------NKDIQDEVQEIFDHAD 174 (463)
T ss_pred CCEEEEeCCcC-CCchHHHHHHHHHHHhcC----CCCcEEEeC------CHHHHHHHHHHHhcCC
Confidence 35566666543 222344555555554432 355666667 5555666666666544
No 330
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=37.10 E-value=1e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=-0.001 Sum_probs=26.7
Q ss_pred HHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 349 l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
..+++..+|+.+..+..+.---..-.+..+|++||.+.+
T Consensus 72 ~~el~~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred hhHhhccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 344567899988887555433334567788999998754
No 331
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=37.04 E-value=57 Score=26.46 Aligned_cols=35 Identities=6% Similarity=0.143 Sum_probs=26.3
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEE
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~ 73 (388)
|+++++ |....|-...++..+|..|.+.| ++|.+-
T Consensus 1 Mk~LIl--Ystr~GqT~kIA~~iA~~L~e~g--~qvdi~ 35 (175)
T COG4635 1 MKTLIL--YSTRDGQTRKIAEYIASHLRESG--IQVDIQ 35 (175)
T ss_pred CceEEE--EecCCCcHHHHHHHHHHHhhhcC--Ceeeee
Confidence 456665 55556688889999999999999 555553
No 332
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.82 E-value=3.6e+02 Score=25.30 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC--------ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016535 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--------SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (388)
Q Consensus 282 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~--------~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~ 353 (388)
..-+.+++.++.+++. .+.+...|...++ -..+....+.+..++.|++ +. ....+.+++..+.
T Consensus 129 E~~~~~~~~A~~lk~~------g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~--~~-t~v~d~~~~~~l~ 199 (360)
T PRK12595 129 ESYEQVEAVAKALKAK------GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA--VI-SEIVNPADVEVAL 199 (360)
T ss_pred cCHHHHHHHHHHHHHc------CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC--EE-EeeCCHHHHHHHH
Confidence 3456677777777664 4566665543221 1235677889999999987 22 2333446666666
Q ss_pred HhCcEEEEcCCCCCCChHHHHH-HHhCCceEeeC
Q 016535 354 GGAVVGIHSMIDEHFGISVVEY-MAAGAIPIGKH 386 (388)
Q Consensus 354 ~~adv~v~ps~~E~~~~~vlEA-ma~G~PVI~~~ 386 (388)
..+|++-.+|.. .....++++ ...|+||+.+.
T Consensus 200 ~~vd~lkI~s~~-~~n~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 200 DYVDVIQIGARN-MQNFELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HhCCeEEECccc-ccCHHHHHHHHccCCcEEEeC
Confidence 669998888743 222455554 45799999775
No 333
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.56 E-value=2.2e+02 Score=25.35 Aligned_cols=78 Identities=12% Similarity=-0.087 Sum_probs=53.7
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRD 348 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~ 348 (388)
..+++=-+.-.++|++.+++-++.. .+.=+++=+-+.. +.+.+.+.++++|+. .|.+. +.-+++.
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~~---------GvdGlivpDLP~e----e~~~~~~~~~~~gi~-~I~lvaPtt~~~r 162 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKEA---------GVDGLLVPDLPPE----ESDELLKAAEKHGID-PIFLVAPTTPDER 162 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHHc---------CCCEEEeCCCChH----HHHHHHHHHHHcCCc-EEEEeCCCCCHHH
Confidence 4455556666789999988766655 5566666665433 355889999999996 55554 5556788
Q ss_pred HHHHHHhCcEEEE
Q 016535 349 LVKLLGGAVVGIH 361 (388)
Q Consensus 349 l~~~~~~adv~v~ 361 (388)
+..+.+.++-|++
T Consensus 163 l~~i~~~a~GFiY 175 (265)
T COG0159 163 LKKIAEAASGFIY 175 (265)
T ss_pred HHHHHHhCCCcEE
Confidence 8888888875553
No 334
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=36.40 E-value=1.3e+02 Score=27.52 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 10 AVITAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
+.|+.+.+++|+ .-+..+-++.+|+++.|..... .-..++..+-+++.+.| +++++..+..
T Consensus 5 ~~~~~~~~~~~~----~~~~~~~~~~~Ig~i~~~~~~~-f~~~~~~gi~~~a~~~g--~~l~i~~~~~ 65 (330)
T PRK10355 5 NILLTLCASLLL----TSVAAHAKEVKIGMAIDDLRLE-RWQKDRDIFVKKAESLG--AKVFVQSANG 65 (330)
T ss_pred HHHHHHHHHHHH----hhccccCCCceEEEEecCCCch-HHHHHHHHHHHHHHHcC--CEEEEECCCC
Confidence 344444444333 3445556799999999988655 56666677778888899 8888776543
No 335
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=36.20 E-value=3.1e+02 Score=24.32 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCCHHHHHHHHHhC---
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA--- 356 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~---g~v~~~~l~~~~~~a--- 356 (388)
.++.+.++.+..++.. ..+.+...- ...-+.++..++-+.+.++|. +.|.+. |....+++.++++..
T Consensus 112 ~~~~~~~~i~~a~~~G----~~v~~~~~~--~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 112 VLERAVEAVEYAKSHG----LDVEFSAED--ATRTDLDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHHHHHHHHHHcC----CeEEEeeec--CCCCCHHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 4455556666555542 333332221 222355666666666666665 355553 555566665554442
Q ss_pred -c---EEEEcCCCCCCChH---HHHHHHhCCceEe
Q 016535 357 -V---VGIHSMIDEHFGIS---VVEYMAAGAIPIG 384 (388)
Q Consensus 357 -d---v~v~ps~~E~~~~~---vlEAma~G~PVI~ 384 (388)
+ +-+.-.....+|+. .++|+.+|.-.|=
T Consensus 185 ~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD 219 (268)
T cd07940 185 VPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVE 219 (268)
T ss_pred CCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEE
Confidence 1 33333334455554 4788888877664
No 336
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=36.18 E-value=63 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=25.9
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
|+|+++ ||++.+-..+++.|.+.| ++|+++..+
T Consensus 1 MkI~II-------GG~G~mG~ala~~L~~~G--~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVL-------GGTGDQGKGLALRLAKAG--NKIIIGSRD 33 (219)
T ss_pred CEEEEE-------cCCCHHHHHHHHHHHhCC--CEEEEEEcC
Confidence 567776 667788889999999999 788776543
No 337
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.10 E-value=2.4e+02 Score=23.10 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=56.4
Q ss_pred hccCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHh
Q 016535 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (388)
Q Consensus 219 ~~~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~ 298 (388)
+..+|.+++.+..+....+.. +. ++..--+|.|. +...-.........+.++|.- .+.+-++.+.+++++
T Consensus 3 ~~~adlv~~DG~~i~~~~~~~-g~--~~~~rv~g~dl--~~~l~~~~~~~~~~ifllG~~-----~~~~~~~~~~l~~~y 72 (172)
T PF03808_consen 3 LNSADLVLPDGMPIVWAARLL-GR--PLPERVTGSDL--FPDLLRRAEQRGKRIFLLGGS-----EEVLEKAAANLRRRY 72 (172)
T ss_pred HHhCCEEecCCHHHHHHHHHc-CC--CCCcccCHHHH--HHHHHHHHHHcCCeEEEEeCC-----HHHHHHHHHHHHHHC
Confidence 456888888888877666554 42 22111223221 111000011233678888853 255556777777775
Q ss_pred cCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 016535 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (388)
Q Consensus 299 ~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g 342 (388)
|++.+ +|..+...+.+..+++.+.+++.+- .+.+.|
T Consensus 73 ----P~l~i--vg~~~g~f~~~~~~~i~~~I~~~~p--div~vg 108 (172)
T PF03808_consen 73 ----PGLRI--VGYHHGYFDEEEEEAIINRINASGP--DIVFVG 108 (172)
T ss_pred ----CCeEE--EEecCCCCChhhHHHHHHHHHHcCC--CEEEEE
Confidence 65554 4433222244556677777777664 366654
No 338
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=35.96 E-value=1.7e+02 Score=28.50 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE-----------------cc
Q 016535 281 EKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-----------------YK 342 (388)
Q Consensus 281 ~Kg~~~ll~a~~~-l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~-----------------~g 342 (388)
..|.+.+++++-. +..+. .++-.+.++|+.. +....++++++.++.|+.-++.+ .|
T Consensus 141 ~~G~~~a~~ali~~~~~~~---~~~~~VNii~~~~---~~~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~g 214 (454)
T cd01973 141 VTGYDEAVRSVVKTIAKKG---APSGKLNVFTGWV---NPGDVVELKHYLSEMDVEANILMDTEDFDSPMLPDKSAVTHG 214 (454)
T ss_pred HHHHHHHHHHHHHHhcccC---CCCCcEEEECCCC---ChHHHHHHHHHHHHcCCCEEEeeccccccCCCCCcccccCCC
Confidence 4678888877753 33221 1344677777542 33456799999999999866663 24
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCCceEee
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGAIPIGK 385 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~PVI~~ 385 (388)
.-+-+++.+.-++ .+-+..+..+ +....|+| .+|+|.+..
T Consensus 215 ~~~~~~i~~~~~A-~~niv~~~~~--~~~~A~~Le~~fGiPyi~~ 256 (454)
T cd01973 215 NTTIEDIADSANA-IATIALARYE--GGKAAEFLQKKFDVPAILG 256 (454)
T ss_pred CCCHHHHHHhhhC-cEEEEEChhh--hHHHHHHHHHHHCCCeecc
Confidence 4555676654444 4333333333 34455555 468887754
No 339
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=35.95 E-value=2.7e+02 Score=23.91 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHH---hCCceEeeC
Q 016535 318 DEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA---AGAIPIGKH 386 (388)
Q Consensus 318 ~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma---~G~PVI~~~ 386 (388)
+.+...+..+...++++.+.++|. |. +.+++..-|..+|.+|.-...|.+.-.++-+.- -|.-||+.|
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~vEfvvg~-~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 78 DEQSLSEYKKALGEAGLSDVVEFVVGE-APEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred ChhhHHHHHHHHhhccccccceEEecC-CHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEec
Confidence 444455777777777887777864 54 246777889999988888888887744444433 344455554
No 340
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.91 E-value=2.8e+02 Score=23.82 Aligned_cols=11 Identities=9% Similarity=-0.139 Sum_probs=4.8
Q ss_pred HHHHhCCceEe
Q 016535 374 EYMAAGAIPIG 384 (388)
Q Consensus 374 EAma~G~PVI~ 384 (388)
++...|.|+|.
T Consensus 72 ~~~~~~ipvv~ 82 (267)
T cd06284 72 TALAKLPPIVQ 82 (267)
T ss_pred HHHhcCCCEEE
Confidence 33344444443
No 341
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=35.88 E-value=2.3e+02 Score=25.41 Aligned_cols=71 Identities=17% Similarity=-0.023 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcc-HHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh
Q 016535 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD-EERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~-~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ 355 (388)
..+..+.+++.++.+.+.. ...+.++..|..+.... .++.+++.+.+++.++.-. .-.|.++.+.+ +.++.
T Consensus 60 ~~~~~eei~~~~~~~~~~g---~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~-~~~g~~~~e~l-~~Lk~ 131 (296)
T TIGR00433 60 RLKKVDEVLEEARKAKAAG---ATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTC-ATLGLLDPEQA-KRLKD 131 (296)
T ss_pred cCCCHHHHHHHHHHHHHCC---CCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEE-ecCCCCCHHHH-HHHHH
Confidence 3455678888887776542 12233444444433222 3467777777777776532 23477765555 44544
No 342
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=35.81 E-value=69 Score=25.91 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 49 GGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
|++++....++.|.+.| ++|+++.++
T Consensus 20 GGG~va~rka~~Ll~~g--a~V~VIsp~ 45 (157)
T PRK06719 20 GGGKIAYRKASGLKDTG--AFVTVVSPE 45 (157)
T ss_pred CCCHHHHHHHHHHHhCC--CEEEEEcCc
Confidence 55677788999999999 888888543
No 343
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.73 E-value=1.4e+02 Score=20.47 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=22.9
Q ss_pred ChhhHHHHHHHHHhhcCCCceEEEEecCCC
Q 016535 49 GGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (388)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~v~~~~~~ 78 (388)
|+.-.-.++|..|.+.| .+|+++.....
T Consensus 6 GgG~ig~E~A~~l~~~g--~~vtli~~~~~ 33 (80)
T PF00070_consen 6 GGGFIGIELAEALAELG--KEVTLIERSDR 33 (80)
T ss_dssp SSSHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred CcCHHHHHHHHHHHHhC--cEEEEEeccch
Confidence 55577889999999999 88888887654
No 344
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=35.67 E-value=2.5e+02 Score=24.44 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCC
Q 016535 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFG 369 (388)
Q Consensus 322 ~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~ 369 (388)
..+..+.++++|....+.+-+..|-+.+..++...|.++.=|..-|||
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~ 144 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFA 144 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCc
Confidence 346778888889888888888889999999999999666555555554
No 345
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=35.59 E-value=4e+02 Score=25.90 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh--CcE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVV 358 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv 358 (388)
.++++.+.+.++++ +.+.+.++ |.+..+++++.....+. +.-.+.|. +.+.++... +|+
T Consensus 92 g~Ni~lL~~q~~~f---------~p~~v~v~------d~~~~~~l~~~l~~~~~-~~~vl~G~---egl~~la~~~evDi 152 (454)
T PLN02696 92 GSNVTLLADQVRKF---------KPKLVAVR------NESLVDELKEALADLDD-KPEIIPGE---EGIVEVARHPEAVT 152 (454)
T ss_pred CCCHHHHHHHHHHh---------CCCEEEEc------CHHHHHHHHHhhcCCCC-CcEEEECH---HHHHHHHcCCCCCE
Confidence 46788877766666 44666776 44444455554321111 12244554 788888875 477
Q ss_pred EEEcCCC-CCCChHHHHHHHhCCceEeeC
Q 016535 359 GIHSMID-EHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 359 ~v~ps~~-E~~~~~vlEAma~G~PVI~~~ 386 (388)
+|....- .|. .+.++|+.+|+.|..-|
T Consensus 153 VV~AIvG~aGL-~pTl~AIkaGK~VALAN 180 (454)
T PLN02696 153 VVTGIVGCAGL-KPTVAAIEAGKDIALAN 180 (454)
T ss_pred EEEeCccccch-HHHHHHHHCCCcEEEec
Confidence 7766443 232 23499999999865443
No 346
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=35.46 E-value=1.5e+02 Score=25.21 Aligned_cols=53 Identities=8% Similarity=-0.103 Sum_probs=34.2
Q ss_pred CCcEEEccC-CCH---HHHHHHHHhCcEEEE-cCCCCCCChH--HHHHHHhCCceEeeCC
Q 016535 335 DGNVEFYKN-LLY---RDLVKLLGGAVVGIH-SMIDEHFGIS--VVEYMAAGAIPIGKHF 387 (388)
Q Consensus 335 ~~~V~~~g~-v~~---~~l~~~~~~adv~v~-ps~~E~~~~~--vlEAma~G~PVI~~~~ 387 (388)
.++|.+.|. +|. ++..+..+.||++|. -+...-.|.. +-+|...|.|+|.-|.
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECC
Confidence 367888877 454 355667778996664 4444333333 4568889999987653
No 347
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=34.99 E-value=43 Score=24.47 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=36.2
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcC
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps 363 (388)
++.+|.|--. +--....+++..++++++-.+.-.-- ++.......+|+++...
T Consensus 5 L~aCG~GvgS-S~~ik~kve~~l~~~gi~~~~~~~~v---~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 5 LAACGNGVGS-STMIKMKVEEVLKELGIDVDVEQCAV---DEIKALTDGADIIVTST 57 (93)
T ss_pred EEECCCCccH-HHHHHHHHHHHHHHcCCCceeeeEEe---cccccCCCcccEEEEeh
Confidence 4556655322 44567789999999999644443332 67778889999998775
No 348
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=34.96 E-value=1.9e+02 Score=21.53 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=46.4
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM 376 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm 376 (388)
++.++|+-... ..+..+++..+++..+++ +...+ +.+|+-..+....+.+..-..++|.-.+++.+
T Consensus 33 k~~lVI~A~D~---s~~~kkki~~~~~~~~vp--~~~~~--t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 33 KVYLIIISNDI---SENSKNKFKNYCNKYNIP--YIEGY--SKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred CceEEEEeCCC---CHhHHHHHHHHHHHcCCC--EEEec--CHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 67888777532 444567888888877766 33333 56999999998776666667777877777654
No 349
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=34.62 E-value=71 Score=24.72 Aligned_cols=36 Identities=3% Similarity=-0.055 Sum_probs=23.2
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
|||++..-.. +++.. ..++++.|.+.| ++|.++.+.
T Consensus 1 k~i~l~vtGs---~~~~~-~~~~l~~L~~~g--~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGS---IAAYK-APDLLRRLKRAG--WEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SS---GGGGG-HHHHHHHHHTTT--SEEEEEESH
T ss_pred CEEEEEEECH---HHHHH-HHHHHHHHhhCC--CEEEEEECC
Confidence 4555553222 24444 889999999999 777777654
No 350
>PRK04531 acetylglutamate kinase; Provisional
Probab=34.49 E-value=68 Score=30.55 Aligned_cols=53 Identities=11% Similarity=-0.022 Sum_probs=31.6
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEE-EeCCCCCccHHHHHHHHHHHHhcCCCCc
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQF-VGSCRNKSDEERLQSLKDKSIELKVDGN 337 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~i-vG~~~~~~~~~~~~~l~~~~~~~~l~~~ 337 (388)
..++-+|.-.-....+.+++.++.|... .+++++ .|+|+ ++.+..++.|++.+
T Consensus 38 ~~VIKiGG~~l~~~~~~l~~dla~L~~~------G~~~VlVHGggp---------qI~~~l~~~gie~~ 91 (398)
T PRK04531 38 FAVIKVGGAVLRDDLEALASSLSFLQEV------GLTPIVVHGAGP---------QLDAELDAAGIEKE 91 (398)
T ss_pred EEEEEEChHHhhcCHHHHHHHHHHHHHC------CCcEEEEECCCH---------HHHHHHHHcCCCcE
Confidence 4455554422223467888888877654 344444 45542 67777888888744
No 351
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=34.47 E-value=42 Score=27.71 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHhCcEEEE--cCCCCC---CChHHHHHHHhCCceEee
Q 016535 347 RDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~~adv~v~--ps~~E~---~~~~vlEAma~G~PVI~~ 385 (388)
.++.++++.||+++. |...|+ ++-..++.|--|.-+|-+
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 466778999997664 444444 444467777666655543
No 352
>PLN02342 ornithine carbamoyltransferase
Probab=34.46 E-value=2.4e+02 Score=26.33 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.1
Q ss_pred ccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHH
Q 016535 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA 86 (388)
Q Consensus 30 ~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~ 86 (388)
.+-+.++|+|+ |...+++..++..+.+.| .++++.++....+...+.+
T Consensus 190 G~l~glkva~v-------GD~~nva~Sli~~~~~~G--~~v~~~~P~~~~~~~~~~~ 237 (348)
T PLN02342 190 GRLEGTKVVYV-------GDGNNIVHSWLLLAAVLP--FHFVCACPKGYEPDAKTVE 237 (348)
T ss_pred CCcCCCEEEEE-------CCCchhHHHHHHHHHHcC--CEEEEECCcccccCHHHHH
Confidence 34567999997 344578888999999999 8888888765333333443
No 353
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=34.29 E-value=3e+02 Score=23.58 Aligned_cols=77 Identities=8% Similarity=-0.132 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE
Q 016535 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 282 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 361 (388)
..++.+++.+.+-+.-++. ..=-+++-|+-+.- ..++..++.+.+++.|+.-.+.--|+.+.+.+.+++...|.+++
T Consensus 19 ~t~eel~~~~~~~~~f~~~--sggGVt~SGGEPll-q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~ 95 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRT--SGGGVTLSGGEVLM-QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLF 95 (213)
T ss_pred cCHHHHHHHHHhhhHhhcC--CCCEEEEeCchHHc-CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEE
Confidence 4566666654433222210 11246677765544 45667788888888888766666799998889999999997764
No 354
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.23 E-value=2.6e+02 Score=22.89 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 289 ~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
.|.-++.++......+-+..++|.|..- -..+.+...+.+. +|.+..+. .+++.+.+..||+++..+..
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~-----G~~~a~~L~~~g~--~V~v~~r~-~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIV-----GKPLAALLLNRNA--TVTVCHSK-TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHH-----HHHHHHHHhhCCC--EEEEEECC-chhHHHHHhhCCEEEEcCCC
Confidence 3444444443333467899999976211 1124444444443 46666654 47899999999999987644
No 355
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.96 E-value=2.9e+02 Score=24.43 Aligned_cols=79 Identities=11% Similarity=-0.070 Sum_probs=50.2
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
++..-+.-...|.+.+++.++.. .+.-+++=+.+ .+...++.+.++++++..-..+.+..+.+.+..
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~~a---------GvdgviipDlp----~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~ 158 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCKEV---------GVDGVLVADLP----LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQ 158 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHHHc---------CCCEEEECCCC----hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHH
Confidence 44444444567888888877766 34444444332 234568888889999863334455566788889
Q ss_pred HHHhCc--EEEEcC
Q 016535 352 LLGGAV--VGIHSM 363 (388)
Q Consensus 352 ~~~~ad--v~v~ps 363 (388)
+.+.++ +++.++
T Consensus 159 i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 159 IAEKSQGFVYLVSR 172 (256)
T ss_pred HHHhCCCCEEEEEC
Confidence 999998 444443
No 356
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=33.90 E-value=1.6e+02 Score=27.13 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=24.8
Q ss_pred cccCCCCChhh--HHHHHHHHHhhcCCCceEEEEecCCC
Q 016535 42 PNTNDGGGGER--VLWCAVKAIQEESPDLDCIVYTGDHD 78 (388)
Q Consensus 42 p~~~~gGG~~~--~~~~l~~~L~~~g~~~~v~v~~~~~~ 78 (388)
-++..| |.++ ++..|++.|.++| +++.|++..+.
T Consensus 41 GNltvG-GTGKTP~v~~L~~~L~~~G--~~~~IlSRGYg 76 (326)
T PF02606_consen 41 GNLTVG-GTGKTPLVIWLARLLQARG--YRPAILSRGYG 76 (326)
T ss_pred cccccC-CCCchHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 344455 4444 6677999999999 88888887653
No 357
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=33.88 E-value=53 Score=25.42 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecC
Q 016535 52 RVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 52 ~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
.=..-++++|.++| |+|++.++.
T Consensus 13 ~P~lala~~L~~rG--h~V~~~~~~ 35 (139)
T PF03033_consen 13 YPFLALARALRRRG--HEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHTT---EEEEEETG
T ss_pred HHHHHHHHHHhccC--CeEEEeecc
Confidence 33467999999999 888877765
No 358
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.80 E-value=32 Score=26.75 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.8
Q ss_pred cCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 31 ~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
...+++|.|+ |++++-..|+++|.+.| +.|.-+.+.
T Consensus 7 ~~~~l~I~iI--------GaGrVG~~La~aL~~ag--~~v~~v~sr 42 (127)
T PF10727_consen 7 QAARLKIGII--------GAGRVGTALARALARAG--HEVVGVYSR 42 (127)
T ss_dssp -----EEEEE--------CTSCCCCHHHHHHHHTT--SEEEEESSC
T ss_pred CCCccEEEEE--------CCCHHHHHHHHHHHHCC--CeEEEEEeC
Confidence 3457899998 56677779999999999 777666543
No 359
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=33.78 E-value=3.1e+02 Score=23.93 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHH-hCc
Q 016535 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG-GAV 357 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~-~ad 357 (388)
...|++.+++.+... .+.-+++-+- ..+..+++.+.++++++..-+.+.+..+.+.+..+.. ..|
T Consensus 89 ~~~G~~~fi~~~~~a---------G~~giiipDl----~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~ 154 (242)
T cd04724 89 LQYGLERFLRDAKEA---------GVDGLIIPDL----PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASG 154 (242)
T ss_pred HHhCHHHHHHHHHHC---------CCcEEEECCC----CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCC
Confidence 466778888776655 4444555433 2245668888999999864333445556777777777 455
No 360
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=33.76 E-value=2.1e+02 Score=23.96 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=33.6
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS 329 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~ 329 (388)
..++++|..... ....+.++.+++++. ++++.++|-|...++.+.++.+-+.+
T Consensus 109 rivi~v~S~~~~-d~~~i~~~~~~lkk~------~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 109 RIVAFVGSPIEE-DEKDLVKLAKRLKKN------NVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred eEEEEEecCCcC-CHHHHHHHHHHHHHc------CCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 557777776432 223455777777665 78888888886666665444444444
No 361
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.69 E-value=1.9e+02 Score=27.85 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCC--CccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCc
Q 016535 281 EKAHPLQLEAFSVALRKLD-ADLPRPRLQFVGSCRN--KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~-~~~~~~~l~ivG~~~~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 357 (388)
..|.+..++++........ ....+-.+.++|..+. ........+++++.+++|++.+..+.|.-+-+|+.+. .+|.
T Consensus 137 ~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~-~~A~ 215 (426)
T cd01972 137 RSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERA-SEAA 215 (426)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhc-ccCC
Confidence 4778888877765432210 0012336888887643 1112345689999999999988888887777887764 4444
Q ss_pred EEEEcCCCCCCChHHHHHH--HhCCceEee
Q 016535 358 VGIHSMIDEHFGISVVEYM--AAGAIPIGK 385 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAm--a~G~PVI~~ 385 (388)
+-|..+.. ++..+.|.| .+|.|.+..
T Consensus 216 lniv~~~~--~g~~~a~~Lee~~GiP~~~~ 243 (426)
T cd01972 216 ANVTLCLD--LGYYLGAALEQRFGVPEIKA 243 (426)
T ss_pred EEEEEChh--HHHHHHHHHHHHhCCCeEec
Confidence 43333322 455666666 578888753
No 362
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.67 E-value=2.1e+02 Score=23.26 Aligned_cols=68 Identities=13% Similarity=-0.037 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE
Q 016535 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 282 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 361 (388)
=++...|+|++.+.... -|....+-| |+++. .|.+.+++.|. .|...|.- ..--.++-.+||-|+.
T Consensus 89 ~Dv~laIDame~~~~~~----iD~~vLvSg------D~DF~-~Lv~~lre~G~--~V~v~g~~-~~ts~~L~~acd~FI~ 154 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPN----IDAVALVTR------DADFL-PVINKAKENGK--ETIVIGAE-PGFSTALQNSADIAII 154 (160)
T ss_pred ccHHHHHHHHHHhccCC----CCEEEEEec------cHhHH-HHHHHHHHCCC--EEEEEeCC-CCChHHHHHhcCeEEe
Confidence 45788999999874332 466666666 55544 34444555565 48888842 1233457788998876
Q ss_pred cC
Q 016535 362 SM 363 (388)
Q Consensus 362 ps 363 (388)
-.
T Consensus 155 L~ 156 (160)
T TIGR00288 155 LG 156 (160)
T ss_pred CC
Confidence 43
No 363
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=33.67 E-value=4.2e+02 Score=25.14 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=78.7
Q ss_pred ccCCEEEECChhHHHHHHHHhCCC-CceEEEcCCCCCCCCccCCC-----------CCCCCCcEEEEEcccCCCC---C-
Q 016535 220 SCADLAMVNSSWTQSHIEKLWGIP-DRIKRVYPPCDTSGLQVLPL-----------ERSTEYPAIISVAQFRPEK---A- 283 (388)
Q Consensus 220 ~~a~~ii~~S~~~~~~l~~~~~~~-~~~~vi~ngvd~~~~~~~~~-----------~~~~~~~~il~vgrl~~~K---g- 283 (388)
.+.|.+.+.+......+.+.++.. .++....-|.+...+..... ....++.+++|.-.+.+.. |
T Consensus 147 ~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~ 226 (388)
T COG1887 147 NHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLIGT 226 (388)
T ss_pred eeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCccccch
Confidence 345777777777777777777763 34433333332222221111 1113468899998877665 2
Q ss_pred --hHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEE
Q 016535 284 --HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (388)
Q Consensus 284 --~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ 361 (388)
....++. .++++.... .+..+++-=..... +.+...-+ ..+.+...-. ..++.++|..+|++|-
T Consensus 227 ~~~~~~~~~-~~~~~~l~~--~~~~ii~k~Hp~is------~~~~~~~~---~~~~~~~vs~--~~di~dll~~sDiLIT 292 (388)
T COG1887 227 QFFNLDIDI-EKLKEKLGE--NEYVIIVKPHPLIS------DKIDKRYA---LDDFVLDVSD--NADINDLLLVSDILIT 292 (388)
T ss_pred hhhhhhhhH-HHHHHhhcc--CCeEEEEecChhhh------hhhhhhhh---ccceeEeccc--chhHHHHHhhhCEEEe
Confidence 2222222 222222210 35666554422111 12222111 1122222222 4899999999999774
Q ss_pred cCCCCCCChHHHHHHHhCCceEee
Q 016535 362 SMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 362 ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++-+..|+|..-+|||-.
T Consensus 293 -----DySSv~fdf~~l~KPiify 311 (388)
T COG1887 293 -----DYSSVIFDFMLLDKPIIFY 311 (388)
T ss_pred -----echHHHHHHHHhcCcEEEE
Confidence 4666899999999999864
No 364
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=33.67 E-value=2.5e+02 Score=24.45 Aligned_cols=48 Identities=13% Similarity=-0.103 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCC--CCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCC
Q 016535 322 LQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFG 369 (388)
Q Consensus 322 ~~~l~~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~ 369 (388)
..+..+.++++|. ...+.+-+..|-+.+..++...|.++.=|..-|||
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfg 154 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTG 154 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 3466677888887 67788888888899999999999666555544544
No 365
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.50 E-value=3.1e+02 Score=23.57 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=6.0
Q ss_pred HHHHhCCceEee
Q 016535 374 EYMAAGAIPIGK 385 (388)
Q Consensus 374 EAma~G~PVI~~ 385 (388)
++...|.|+|.-
T Consensus 74 ~~~~~~ipvV~~ 85 (268)
T cd06289 74 RLAESGIPVVLV 85 (268)
T ss_pred HHHhcCCCEEEE
Confidence 444455555544
No 366
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=33.45 E-value=79 Score=29.15 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=23.3
Q ss_pred HHHHHHHHhCcEEEE--cCCCCCCChH---HHHHHHhCC
Q 016535 347 RDLVKLLGGAVVGIH--SMIDEHFGIS---VVEYMAAGA 380 (388)
Q Consensus 347 ~~l~~~~~~adv~v~--ps~~E~~~~~---vlEAma~G~ 380 (388)
+++.++++.||++++ |...|+-|+. -+..|--|.
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCe
Confidence 678999999996663 5566776554 556665555
No 367
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=33.14 E-value=3e+02 Score=23.73 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHHh-C
Q 016535 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGG-A 356 (388)
Q Consensus 279 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~l~~~~~~-a 356 (388)
..++.++.+.++++.+ ++.-++.|+-. .......+++.++++|+. -+.-+ |.=+.+-+.+.... .
T Consensus 70 ~~e~eve~L~~~l~~l---------~~d~iv~GaI~---s~yqk~rve~lc~~lGl~-~~~PLWg~d~~ell~e~~~~Gf 136 (223)
T COG2102 70 EEEREVEELKEALRRL---------KVDGIVAGAIA---SEYQKERVERLCEELGLK-VYAPLWGRDPEELLEEMVEAGF 136 (223)
T ss_pred cchhhHHHHHHHHHhC---------cccEEEEchhh---hHHHHHHHHHHHHHhCCE-EeecccCCCHHHHHHHHHHcCC
Confidence 5677888888888877 67889999763 344567889999999985 34444 44344444445555 5
Q ss_pred cEEEEcCCCCCCC
Q 016535 357 VVGIHSMIDEHFG 369 (388)
Q Consensus 357 dv~v~ps~~E~~~ 369 (388)
++.|.....++++
T Consensus 137 ~~~Iv~Vsa~gL~ 149 (223)
T COG2102 137 EAIIVAVSAEGLD 149 (223)
T ss_pred eEEEEEEeccCCC
Confidence 7777666555655
No 368
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=33.08 E-value=3.1e+02 Score=23.39 Aligned_cols=60 Identities=28% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCcEEEccCCC--HHHHHHHHHhCcEEEEcCCCCCC------ChHHHHH-HHhCCceEe
Q 016535 324 SLKDKSIELKVDGNVEFYKNLL--YRDLVKLLGGAVVGIHSMIDEHF------GISVVEY-MAAGAIPIG 384 (388)
Q Consensus 324 ~l~~~~~~~~l~~~V~~~g~v~--~~~l~~~~~~adv~v~ps~~E~~------~~~vlEA-ma~G~PVI~ 384 (388)
++.+..++++. |-+...|+.- .+++.+.+..--+=+|||..-.| |..+.++ +..|....+
T Consensus 69 ~~~~~l~~~~~-Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG 137 (207)
T PLN02331 69 ELVDALRGAGV-DFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSG 137 (207)
T ss_pred HHHHHHHhcCC-CEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEE
Confidence 34444444443 2344445421 23444444444466777753332 3567666 557766543
No 369
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=32.95 E-value=2.4e+02 Score=24.81 Aligned_cols=12 Identities=8% Similarity=-0.144 Sum_probs=5.8
Q ss_pred HHHhCCceEeeC
Q 016535 375 YMAAGAIPIGKH 386 (388)
Q Consensus 375 Ama~G~PVI~~~ 386 (388)
+...|.|+|+.+
T Consensus 75 ~~~~~iPvV~~~ 86 (289)
T cd01540 75 AKAYNMKVVAVD 86 (289)
T ss_pred HHhCCCeEEEec
Confidence 344555555443
No 370
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=32.94 E-value=71 Score=26.77 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=25.8
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
|||+++ |..+++=..++++..++| |+||.+....
T Consensus 1 mKIaiI-------gAsG~~Gs~i~~EA~~RG--HeVTAivRn~ 34 (211)
T COG2910 1 MKIAII-------GASGKAGSRILKEALKRG--HEVTAIVRNA 34 (211)
T ss_pred CeEEEE-------ecCchhHHHHHHHHHhCC--CeeEEEEeCh
Confidence 677877 455566678889999999 7888887653
No 371
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=32.75 E-value=1.7e+02 Score=26.14 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 14 AVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
+++++-.++---| +..++-+..|+++.|..... --..++..+.+++.+.| +++++....
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~I~vi~~~~~~~-f~~~~~~~i~~~~~~~G--~~~~~~~~~ 65 (295)
T PRK10653 7 ATLVSAVALSATV-SANAMAKDTIALVVSTLNNP-FFVSLKDGAQKEADKLG--YNLVVLDSQ 65 (295)
T ss_pred HHHHHHHHHHHhc-CCccccCCeEEEEecCCCCh-HHHHHHHHHHHHHHHcC--CeEEEecCC
Confidence 3444444443334 33334466889998887654 56777888889999999 777776543
No 372
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=32.72 E-value=2.4e+02 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=6.0
Q ss_pred HHHHHHhCCceEe
Q 016535 372 VVEYMAAGAIPIG 384 (388)
Q Consensus 372 vlEAma~G~PVI~ 384 (388)
+.++...|.|||+
T Consensus 74 ~~~~~~~giPvV~ 86 (268)
T cd06306 74 ILQQVAASIPVIA 86 (268)
T ss_pred HHHHHHCCCCEEE
Confidence 3444444555544
No 373
>PRK07714 hypothetical protein; Provisional
Probab=32.67 E-value=2e+02 Score=21.11 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=41.7
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHH
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEY 375 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEA 375 (388)
.+.++++.... +....+++...++..+++ +.+.+ +.+|+-..+......+..-..++|.-.+++.
T Consensus 34 ~~~lViiA~D~---s~~~~~ki~~~~~~~~vp--~~~~~--sk~eLG~a~Gk~~~~~vai~d~g~a~~l~~~ 98 (100)
T PRK07714 34 KAKLVLLSEDA---SVNTTKKITDKCTYYNVP--MRKVE--NRQQLGHAIGKDERVVVAVLDEGFAKKLRSM 98 (100)
T ss_pred CceEEEEeCCC---CHHHHHHHHHHHHhcCCC--EEEeC--CHHHHHHHhCCCcceEEEEeCchhHHHHHHH
Confidence 56777776532 344567888888887776 44443 5699999888765444444556666555553
No 374
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.36 E-value=89 Score=24.71 Aligned_cols=40 Identities=5% Similarity=0.097 Sum_probs=29.6
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
|||+++.-.....|-.+.++..+++.+.+.| +++.++...
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEecc
Confidence 7888887666555577777788889999988 777777544
No 375
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=32.30 E-value=3.1e+02 Score=25.00 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred CccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCCCCchhHHHHhhh
Q 016535 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD 90 (388)
Q Consensus 32 ~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~~~~~~~~~~~~~ 90 (388)
-+.++++|+ |.+.++...++..-...| .++.+.++....+.+++.+..++
T Consensus 151 l~g~k~a~v-------GDgNNv~nSl~~~~a~~G--~dv~ia~Pk~~~p~~~~~~~a~~ 200 (310)
T COG0078 151 LKGLKLAYV-------GDGNNVANSLLLAAAKLG--MDVRIATPKGYEPDPEVVEKAKE 200 (310)
T ss_pred ccCcEEEEE-------cCcchHHHHHHHHHHHhC--CeEEEECCCcCCcCHHHHHHHHH
Confidence 678999998 666888889999999999 89999998875555666665544
No 376
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=32.14 E-value=1.6e+02 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=16.2
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEe
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYT 74 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~ 74 (388)
|+.++.-.+|++.|. .+ ++|+..+
T Consensus 7 G~~GqLG~~L~~~l~-~~--~~v~a~~ 30 (281)
T COG1091 7 GANGQLGTELRRALP-GE--FEVIATD 30 (281)
T ss_pred cCCChHHHHHHHHhC-CC--ceEEecc
Confidence 677778888888887 44 5555443
No 377
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.07 E-value=2.5e+02 Score=24.37 Aligned_cols=8 Identities=13% Similarity=0.073 Sum_probs=4.1
Q ss_pred CcEEEEEe
Q 016535 304 RPRLQFVG 311 (388)
Q Consensus 304 ~~~l~ivG 311 (388)
++.+.+..
T Consensus 29 g~~~~~~~ 36 (273)
T cd06305 29 GGDLRVYD 36 (273)
T ss_pred CCEEEEEC
Confidence 45555543
No 378
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.06 E-value=1.7e+02 Score=21.84 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCcEEEccCCCHHHHHHHHH--hCcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 324 ~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
..++.+++++.+ .+ +++.+++. ..|+.+..+..+.-.-.+.+++..|++|++-.
T Consensus 38 ~~~~~~~~~~~~----~~-----~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 38 RAEAFAEKYGIP----VY-----TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHHTTSE----EE-----SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHhccc----ch-----hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc
Confidence 455556666654 22 33555666 67877766655554556789999999998753
No 379
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=31.92 E-value=2e+02 Score=25.14 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEe
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVG 311 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG 311 (388)
.+++.+....++. ++.+.+..
T Consensus 27 ~~~~gi~~~~~~~-----g~~~~v~~ 47 (275)
T cd06295 27 SLLGGIADALAER-----GYDLLLSF 47 (275)
T ss_pred HHHHHHHHHHHHc-----CCEEEEEe
Confidence 3444444444442 56655554
No 380
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=31.91 E-value=65 Score=22.08 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 016535 2 APYGILIWAVITAVLASILILASH 25 (388)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (388)
-|||.+.+ ||+++.=.||+.+++
T Consensus 18 dP~~Fl~~-vll~LtPlfiisa~l 40 (74)
T PF15086_consen 18 DPYEFLTT-VLLILTPLFIISAVL 40 (74)
T ss_pred ChHHHHHH-HHHHHhHHHHHHHHH
Confidence 38888877 777776666665443
No 381
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=31.61 E-value=2.9e+02 Score=24.44 Aligned_cols=93 Identities=22% Similarity=0.132 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-----CcEEEccCC-----------------
Q 016535 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-----GNVEFYKNL----------------- 344 (388)
Q Consensus 287 ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-----~~V~~~g~v----------------- 344 (388)
++.|++...++. .+.+++++|.|.- ...-.+.+.+...+.|++ +++.+...-
T Consensus 12 ll~Al~~~g~~l----~d~riv~~GAGsA--g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~ 85 (255)
T PF03949_consen 12 LLNALRVTGKKL----SDQRIVFFGAGSA--GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPF 85 (255)
T ss_dssp HHHHHHHHTS-G----GG-EEEEEB-SHH--HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHH
T ss_pred HHHHHHHhCCCH----HHcEEEEeCCChh--HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhh
Confidence 445555444443 6788888887621 112333444444444774 455443221
Q ss_pred -----CH---HHHHHHHHhC--cEEEEcCC-CCCCChHHHHHHHh--CCceEee
Q 016535 345 -----LY---RDLVKLLGGA--VVGIHSMI-DEHFGISVVEYMAA--GAIPIGK 385 (388)
Q Consensus 345 -----~~---~~l~~~~~~a--dv~v~ps~-~E~~~~~vlEAma~--G~PVI~~ 385 (388)
+. .++.+..+.+ |++|-.|. ...|.--++++|+. -.|||-+
T Consensus 86 a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 86 ARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp HBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred hccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEE
Confidence 11 2788888888 99999884 45588889999975 5777754
No 382
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.59 E-value=1.8e+02 Score=24.71 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=55.8
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
.+++++|.= ..|=|.++- ++.|.... -++.+...|...... .+..++..+.++.+..+......
T Consensus 51 ~v~vlcG~G--nNGGDG~Va-AR~L~~~G----~~V~v~~~~~~~~~~----~~~a~~~~~~l~~~~~v~~~~~~----- 114 (203)
T COG0062 51 RVLVLCGPG--NNGGDGLVA-ARHLKAAG----YAVTVLLLGDPKKLK----TEAARANLKSLGIGGVVKIKELE----- 114 (203)
T ss_pred EEEEEECCC--CccHHHHHH-HHHHHhCC----CceEEEEeCCCCCcc----HHHHHHHHHhhcCCcceeecccc-----
Confidence 455566632 455566554 56666553 478888888653222 12344444444443334443332
Q ss_pred HHHHHhCcEEEEcC--------CCCCCChHHHHHH-HhCCceEeeCC
Q 016535 350 VKLLGGAVVGIHSM--------IDEHFGISVVEYM-AAGAIPIGKHF 387 (388)
Q Consensus 350 ~~~~~~adv~v~ps--------~~E~~~~~vlEAm-a~G~PVI~~~~ 387 (388)
.....+|++|-.- ..|.+.. ++|+. .+|+|||+-|.
T Consensus 115 -~~~~~~dvIVDalfG~G~~g~lrep~a~-~Ie~iN~~~~pivAVDi 159 (203)
T COG0062 115 -DEPESADVIVDALFGTGLSGPLREPFAS-LIEAINASGKPIVAVDI 159 (203)
T ss_pred -cccccCCEEEEeceecCCCCCCccHHHH-HHHHHHhcCCceEEEeC
Confidence 1677889888442 2344433 44544 59999999874
No 383
>PRK07283 hypothetical protein; Provisional
Probab=31.53 E-value=2.1e+02 Score=20.97 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=41.7
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHH
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVE 374 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlE 374 (388)
+..++++.... +.+..+.+.+.++.++++ +.... +.+|+-..+..- -.+..-..+||.-.+++
T Consensus 34 k~~lVi~A~Da---s~~~~kk~~~~~~~~~Vp--~~~~~--t~~eLG~a~Gk~-~~vvai~d~g~a~~l~~ 96 (98)
T PRK07283 34 QAKLVFLANDA---GPNLTKKVTDKSNYYQVE--VSTVF--STLELSAAVGKP-RKVLAVTDAGFSKKMRS 96 (98)
T ss_pred CccEEEEeCCC---CHHHHHHHHHHHHHcCCC--EEEeC--CHHHHHHHhCCC-ceEEEEeChhHHHHHHH
Confidence 67777777532 445567888888887776 33333 568999999884 34444566777766655
No 384
>PRK09492 treR trehalose repressor; Provisional
Probab=31.27 E-value=1.3e+02 Score=27.01 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=33.4
Q ss_pred cccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 29 ~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
.++++...|+++.|..... ....++..+.+++.+.| ++++++....
T Consensus 57 l~~~~~~~Ig~i~~~~~~~-~~~~~~~~i~~~~~~~g--y~~~~~~~~~ 102 (315)
T PRK09492 57 MRGQSDKVVGIIVSRLDSL-SENQAVRTMLPAFYEQG--YDPIIMESQF 102 (315)
T ss_pred hhcCCCCeEEEEecCCcCc-ccHHHHHHHHHHHHHcC--CeEEEEecCC
Confidence 3455667899999877554 55677778889999999 7777765543
No 385
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.20 E-value=1e+02 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccceEEEeccccCCCCChhhHHHHHHHH
Q 016535 9 WAVITAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKA 60 (388)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~ 60 (388)
+.++++++.+++.+.+.++..||..+..|+++-|.- .|=-..+.+|...
T Consensus 13 ~~~i~~lli~~~~~~~~~~~~rrs~~~~Vll~Gl~d---SGKT~LF~qL~~g 61 (238)
T KOG0090|consen 13 AVIITVLLILTILLFLKLKLFRRSKQNAVLLVGLSD---SGKTSLFTQLITG 61 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcEEEEecCC---CCceeeeeehhcC
Confidence 334555555555666677777777788899886655 4555555666554
No 386
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.17 E-value=2.9e+02 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGS 312 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~ 312 (388)
..+++.+.+..++. ++.+.+...
T Consensus 15 ~~~~~gi~~~a~~~-----g~~~~~~~~ 37 (288)
T cd01538 15 IRDRPNFEAALKEL-----GAEVIVQNA 37 (288)
T ss_pred HHHHHHHHHHHHHc-----CCEEEEECC
Confidence 34445555544442 566666554
No 387
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=31.11 E-value=1.3e+02 Score=25.52 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.0
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCC
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~ 78 (388)
|+|++...+-- ...-+..|.++|.+.| ++|+|..+..+
T Consensus 1 M~ILlTNDDGi----~a~Gi~aL~~~L~~~g--~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGI----DAPGIRALAKALSALG--HDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-T----TSHHHHHHHHHHTTTS--SEEEEEEESSS
T ss_pred CeEEEEcCCCC----CCHHHHHHHHHHHhcC--CeEEEEeCCCC
Confidence 67777766543 3345778889998888 88999988764
No 388
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=30.83 E-value=1.8e+02 Score=26.45 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=48.8
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.++|-..+..=...++.+++.+ .+.+.+++....... +++.+.+++.|. ++.+. ++
T Consensus 150 g~~va~vGD~~~~~v~~Sl~~~~a~~---------g~~v~~~~P~~~~~~----~~~~~~~~~~G~--~v~~~-----~d 209 (301)
T TIGR00670 150 GLKIALVGDLKYGRTVHSLAEALTRF---------GVEVYLISPEELRMP----KEILEELKAKGI--KVRET-----ES 209 (301)
T ss_pred CCEEEEEccCCCCcHHHHHHHHHHHc---------CCEEEEECCccccCC----HHHHHHHHHcCC--EEEEE-----CC
Confidence 37789999654445466677777666 689999986432111 244455555443 24432 67
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+.++.||++...++
T Consensus 210 ~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 210 LEEVIDEADVLYVTRI 225 (301)
T ss_pred HHHHhCCCCEEEECCc
Confidence 7889999998777665
No 389
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=30.75 E-value=1.7e+02 Score=27.64 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC--------CCHHHHHHHHHhCcEEE--EcCCCC----CC
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN--------LLYRDLVKLLGGAVVGI--HSMIDE----HF 368 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--------v~~~~l~~~~~~adv~v--~ps~~E----~~ 368 (388)
.+-++-|+|-|.-. ..+.+.++.+|+. |..... ....++.++++.||++. .|...+ +.
T Consensus 115 ~gktvGIIG~G~IG------~~vA~~l~a~G~~--V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 115 HDRTVGIVGVGNVG------RRLQARLEALGIK--TLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred CCCEEEEECcCHHH------HHHHHHHHHCCCE--EEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 46788888876432 2666777777764 544321 11246889999999777 443333 44
Q ss_pred C---hHHHHHHHhCCceEeeC
Q 016535 369 G---ISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 369 ~---~~vlEAma~G~PVI~~~ 386 (388)
+ -..+++|.-|.-+|-+.
T Consensus 187 ~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred cccCHHHHhcCCCCcEEEECC
Confidence 4 44777777776666443
No 390
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=30.72 E-value=1.4e+02 Score=31.12 Aligned_cols=38 Identities=24% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
.++.+.++.+|+++-.|..-.|.--++++|+ ..|+|-.
T Consensus 245 ~~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~-~~piifa 282 (752)
T PRK07232 245 RTLAEAIEGADVFLGLSAAGVLTPEMVKSMA-DNPIIFA 282 (752)
T ss_pred CCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEEe
Confidence 3678888999999998885558888999998 4788753
No 391
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=30.69 E-value=82 Score=29.41 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=44.2
Q ss_pred EEcccCCCCChHHHHH-----HHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 274 SVAQFRPEKAHPLQLE-----AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 274 ~vgrl~~~Kg~~~ll~-----a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
-.|.+-+..|+-.+.+ .|+.++.+. +.++.++++|+|.+.+ +.++++.++ |..--.+.|
T Consensus 392 gLg~~fpiENIYSa~kiGKescFerI~~RF---g~K~~yvvIgdG~eee---------~aAK~ln~P----fwrI~~h~D 455 (468)
T KOG3107|consen 392 GLGSSFPIENIYSATKIGKESCFERIQSRF---GRKVVYVVIGDGVEEE---------QAAKALNMP----FWRISSHSD 455 (468)
T ss_pred hcCCcccchhhhhhhhccHHHHHHHHHHHh---CCceEEEEecCcHHHH---------HHHHhhCCc----eEeeccCcc
Confidence 3455555555555543 677888886 4589999999885433 445666655 222223578
Q ss_pred HHHHHHhCcE
Q 016535 349 LVKLLGGAVV 358 (388)
Q Consensus 349 l~~~~~~adv 358 (388)
+.+++.+-|.
T Consensus 456 l~~l~~aL~~ 465 (468)
T KOG3107|consen 456 LDALYSALEL 465 (468)
T ss_pred HHHHhhhccc
Confidence 8888887664
No 392
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=30.68 E-value=1.3e+02 Score=27.11 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=33.6
Q ss_pred hcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 28 ~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
..++++...|+++.|+.... -...++..+.+.+.+.| +++++..+..
T Consensus 53 ~l~~~~~~~Ig~i~~~~~~~-~~~~~~~~i~~~~~~~g--y~~~i~~~~~ 99 (311)
T TIGR02405 53 AMRGGSDKVVAVIVSRLDSP-SENLAVSGMLPVFYTAG--YDPIIMESQF 99 (311)
T ss_pred HhhcCCCCEEEEEeCCcccc-cHHHHHHHHHHHHHHCC--CeEEEecCCC
Confidence 34556667899999876544 45667778889999999 7777665443
No 393
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=30.62 E-value=86 Score=27.73 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=25.9
Q ss_pred ceEEEeccccCCCCChhh--HHHHHHHHHhhcCCCceEEEEecCC
Q 016535 35 TSVAFFHPNTNDGGGGER--VLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~--~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
|+|++. ++| |.++ .+.+|+.+|+++| .+|.++-.+.
T Consensus 1 ~~i~~~----gKG-GVGKTT~~~nLA~~La~~g--~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVY----GKG-GIGKSTTSSNLSVAFAKLG--KRVLQIGCDP 38 (268)
T ss_pred CEEEEE----cCC-cCcHHHHHHHHHHHHHhCC--CeEEEEecCc
Confidence 567776 244 5554 5689999999999 7888775554
No 394
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=30.55 E-value=17 Score=27.91 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccCccce
Q 016535 17 ASILILASHVHNARRNRTTS 36 (388)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (388)
+.+++++++.+|+|++++..
T Consensus 92 l~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 92 LALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhhhccccCC
Confidence 34444556668888777654
No 395
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=30.54 E-value=2.7e+02 Score=22.00 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=15.3
Q ss_pred EEEEcCCCCCCChHHHHHHH-hCCceE
Q 016535 358 VGIHSMIDEHFGISVVEYMA-AGAIPI 383 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAma-~G~PVI 383 (388)
+.+.|--+-..+.++-.|.+ ..+|+|
T Consensus 70 IvINpga~THTSvAlrDAi~av~iP~v 96 (146)
T COG0757 70 IVINPGAYTHTSVALRDAIAAVSIPVV 96 (146)
T ss_pred EEEcCccchhhHHHHHHHHHhcCCCEE
Confidence 55566666666666666653 345554
No 396
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=30.49 E-value=3.9e+02 Score=23.73 Aligned_cols=40 Identities=5% Similarity=0.132 Sum_probs=26.7
Q ss_pred CccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCCC
Q 016535 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (388)
Q Consensus 32 ~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~~ 78 (388)
.++|+|++-..+--.. .-+..|+++|.+.| +|+|+.+..+
T Consensus 3 ~~~M~ILltNDDGi~a----~Gi~aL~~~l~~~g---~V~VvAP~~~ 42 (257)
T PRK13932 3 DKKPHILVCNDDGIEG----EGIHVLAASMKKIG---RVTVVAPAEP 42 (257)
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHHhCC---CEEEEcCCCC
Confidence 3679998877665332 33667778888777 4677777653
No 397
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.42 E-value=1.1e+02 Score=27.81 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=26.7
Q ss_pred ceE-EEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 35 TSV-AFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 35 ~~I-~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
+++ ++++|..+.| .+.+...++.+.|.+.| .++.++.+.
T Consensus 9 ~~~~iI~NP~sG~g-~~~~~~~~~~~~l~~~g--~~~~~~~t~ 48 (306)
T PRK11914 9 GKVTVLTNPLSGHG-AAPHAAERAIARLHHRG--VDVVEIVGT 48 (306)
T ss_pred ceEEEEECCCCCCC-cHHHHHHHHHHHHHHcC--CeEEEEEeC
Confidence 444 4567887555 55677778889999999 565555544
No 398
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=30.35 E-value=1.3e+02 Score=28.75 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 343 (388)
.+++.++.++++. +..-++|.+||.++..+-..|.+.+.. ++++.+++.|-
T Consensus 432 r~~d~l~~lk~K~--qrtvyRlTlVkg~n~dd~~Ayfnlv~r-----glp~fieVkGv 482 (601)
T KOG1160|consen 432 RFLDSLKALKKKQ--QRTVYRLTLVKGWNSDDLPAYFNLVSR-----GLPDFIEVKGV 482 (601)
T ss_pred HHHHHHHHHHHhh--cceEEEEEEeccccccccHHHHHHHhc-----cCCceEEEece
Confidence 4667777776553 235699999999866554444444433 77777776653
No 399
>PRK12861 malic enzyme; Reviewed
Probab=30.33 E-value=1.1e+02 Score=31.72 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
..+.+.++.+|+|+-.|....|.--++++|+- .|+|-.
T Consensus 249 ~~L~eai~~advliG~S~~g~ft~e~v~~Ma~-~PIIFa 286 (764)
T PRK12861 249 RTLAEVIGGADVFLGLSAGGVLKAEMLKAMAA-RPLILA 286 (764)
T ss_pred CCHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc-CCEEEE
Confidence 36788889999999988755577789999987 788754
No 400
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=30.29 E-value=2.5e+02 Score=23.57 Aligned_cols=86 Identities=14% Similarity=-0.001 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHH---HHHHhCcEEE
Q 016535 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV---KLLGGAVVGI 360 (388)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~---~~~~~adv~v 360 (388)
.+.+++.+..+ ++..+-+|+.. +.+...++++ .++.+ .+.-.+-.+..+.. .+...+|.++
T Consensus 62 ~~~i~~ia~~~---------~~d~Vqlhg~e---~~~~~~~l~~---~~~~~-~i~~i~~~~~~~~~~~~~~~~~aD~il 125 (203)
T cd00405 62 LEEILEIAEEL---------GLDVVQLHGDE---SPEYCAQLRA---RLGLP-VIKAIRVKDEEDLEKAAAYAGEVDAIL 125 (203)
T ss_pred HHHHHHHHHhc---------CCCEEEECCCC---CHHHHHHHHh---hcCCc-EEEEEecCChhhHHHhhhccccCCEEE
Confidence 45555555544 55666666532 2333334433 22322 33334443433332 3335689888
Q ss_pred EcCCC--------CCCChHHHHHHHhCCceEee
Q 016535 361 HSMID--------EHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 361 ~ps~~--------E~~~~~vlEAma~G~PVI~~ 385 (388)
+++.. +.++...+......+|+++-
T Consensus 126 ~dt~~~~~~Gg~g~~~~~~~l~~~~~~~Pvila 158 (203)
T cd00405 126 LDSKSGGGGGGTGKTFDWSLLRGLASRKPVILA 158 (203)
T ss_pred EcCCCCCCCCCCcceEChHHhhccccCCCEEEE
Confidence 88742 23556666655567888764
No 401
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=30.25 E-value=3.4e+02 Score=24.79 Aligned_cols=75 Identities=16% Similarity=0.054 Sum_probs=44.7
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.++|. ...=...+++++..+ ++++.+++......+.+.. .+.+++.|. ++... ++
T Consensus 152 gl~i~~vGd--~~~v~~Sl~~~l~~~---------g~~v~~~~P~~~~~~~~~~---~~~~~~~g~--~~~~~-----~d 210 (304)
T PRK00779 152 GLKVAWVGD--GNNVANSLLLAAALL---------GFDLRVATPKGYEPDPEIV---EKIAKETGA--SIEVT-----HD 210 (304)
T ss_pred CcEEEEEeC--CCccHHHHHHHHHHc---------CCEEEEECCcccCCCHHHH---HHHHHHcCC--eEEEE-----cC
Confidence 367899996 233344455555544 7899999975333222222 223455553 24322 67
Q ss_pred HHHHHHhCcEEEEcCC
Q 016535 349 LVKLLGGAVVGIHSMI 364 (388)
Q Consensus 349 l~~~~~~adv~v~ps~ 364 (388)
+.+.+..||++...+|
T Consensus 211 ~~~a~~~aDvvy~~~w 226 (304)
T PRK00779 211 PKEAVKGADVVYTDVW 226 (304)
T ss_pred HHHHhCCCCEEEecCc
Confidence 8889999998887754
No 402
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=30.13 E-value=1.5e+02 Score=20.90 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=32.2
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
++++|.|-.. ..-...++++..++.++...+.... ..++.+.+..+|+++.+...
T Consensus 4 livC~~G~~t-S~~l~~~i~~~~~~~~i~~~v~~~~---~~~~~~~~~~~Dliist~~~ 58 (89)
T cd05566 4 LVACGTGVAT-STVVASKVKELLKENGIDVKVEQCK---IAEVPSLLDDADLIVSTTKV 58 (89)
T ss_pred EEECCCCccH-HHHHHHHHHHHHHHCCCceEEEEec---HHHhhcccCCCcEEEEcCCc
Confidence 3445554211 2234567888888877764444333 35555567789988876543
No 403
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=30.11 E-value=2.9e+02 Score=22.12 Aligned_cols=57 Identities=16% Similarity=-0.042 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCc-cHHHHHHHHHHHHhc-CCCCcEEEccCCCHHHHH-----HHHHhCcEEEEc
Q 016535 306 RLQFVGSCRNKS-DEERLQSLKDKSIEL-KVDGNVEFYKNLLYRDLV-----KLLGGAVVGIHS 362 (388)
Q Consensus 306 ~l~ivG~~~~~~-~~~~~~~l~~~~~~~-~l~~~V~~~g~v~~~~l~-----~~~~~adv~v~p 362 (388)
.+.+.|+-|..+ +.+...++.+.+++. +...-+.+.|+...+.+. +++...|+++--
T Consensus 66 gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~liDg 129 (154)
T TIGR02491 66 GLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYIDVLVDG 129 (154)
T ss_pred eEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCCEEEec
Confidence 477788766553 234555555555543 444455678887654443 688999987643
No 404
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=30.02 E-value=46 Score=22.54 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=43.3
Q ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCc
Q 016535 302 LPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI 381 (388)
Q Consensus 302 ~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~P 381 (388)
+.+..+.+ ++. +....+++++.++++|-. + .... -...+.+|.... ........+|.+.|.|
T Consensus 6 F~g~~f~i-~~~----~~~~~~~l~~~i~~~GG~--v--~~~~--------~~~~thvI~~~~-~~~~~k~~~~~~~~i~ 67 (78)
T PF00533_consen 6 FEGCTFCI-SGF----DSDEREELEQLIKKHGGT--V--SNSF--------SKKTTHVIVGNP-NKRTKKYKAAIANGIP 67 (78)
T ss_dssp TTTEEEEE-SST----SSSHHHHHHHHHHHTTEE--E--ESSS--------STTSSEEEESSS-HCCCHHHHHHHHTTSE
T ss_pred CCCEEEEE-ccC----CCCCHHHHHHHHHHcCCE--E--Eeec--------ccCcEEEEeCCC-CCccHHHHHHHHCCCe
Confidence 45788888 333 233356888889888732 3 2221 344566665544 3456668999999999
Q ss_pred eEeeCC
Q 016535 382 PIGKHF 387 (388)
Q Consensus 382 VI~~~~ 387 (388)
+|.+++
T Consensus 68 iV~~~W 73 (78)
T PF00533_consen 68 IVSPDW 73 (78)
T ss_dssp EEETHH
T ss_pred EecHHH
Confidence 998753
No 405
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=29.96 E-value=3.9e+02 Score=23.87 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=60.1
Q ss_pred cCCEEEECChhHHHHHHHHhCCCCceEEEcCCCCCCCCccCCCCCCCCCcEEEEEcccCCCCChHHHHHHHHHHHHHhcC
Q 016535 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDA 300 (388)
Q Consensus 221 ~a~~ii~~S~~~~~~l~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~ 300 (388)
+.|.--.-|+|..+.+++ ....+.||.+..........+ +.-.-|+|. -||..-+++.+..|.+.+-
T Consensus 7 RTDIPAfY~~Wf~nRl~~------G~v~vrNPfn~~qvsrv~l~p-~~Vd~iVFW-----TKnp~P~l~~L~~l~~~gy- 73 (266)
T PF08902_consen 7 RTDIPAFYSDWFMNRLRE------GYVLVRNPFNPHQVSRVSLSP-EDVDCIVFW-----TKNPAPFLPYLDELDERGY- 73 (266)
T ss_pred CCCcccchHHHHHHHhhC------CEEEeECCCCCCceEEEEcCh-hcceEEEEe-----cCCcHHHHhhHHHHHhCCC-
Confidence 445555567777777765 345688988865544332222 111234443 3888888898988877420
Q ss_pred CCCCcEEEEEeCCCCCc-----cHHHHHHHHHHHHhcCCC
Q 016535 301 DLPRPRLQFVGSCRNKS-----DEERLQSLKDKSIELKVD 335 (388)
Q Consensus 301 ~~~~~~l~ivG~~~~~~-----~~~~~~~l~~~~~~~~l~ 335 (388)
..=+++.+.|-+.+-| -.+..+.++++++.+|-+
T Consensus 74 -~~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG~~ 112 (266)
T PF08902_consen 74 -PYYFQFTITGYGKDLEPNVPPKDERIETFRELSERIGPE 112 (266)
T ss_pred -ceEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHCCC
Confidence 0236777777653321 224667788888888754
No 406
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=29.86 E-value=4.2e+02 Score=23.94 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred EEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHH-----------HHhcCCC--CcEE
Q 016535 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDK-----------SIELKVD--GNVE 339 (388)
Q Consensus 273 l~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~-----------~~~~~l~--~~V~ 339 (388)
+|+||....||+...++.-++..+. +...-++-|-.. +.... .+.+. +.+..+. .-+-
T Consensus 187 ~yigR~Tt~kG~~~mfD~h~~~lK~-----~~~~t~~~Gier---S~A~~-~i~d~~~~~~y~~~~~~~~~~~~pN~~~~ 257 (355)
T PF11440_consen 187 RYIGRQTTWKGPRRMFDLHEKILKP-----AGFKTIMEGIER---SPAKI-SIKDHGIPYEYYPKLDCDEPKPAPNSPVP 257 (355)
T ss_dssp EEE--SSGGG-HHHHHHHHHHTTTT-----TT-EEEEE---S---STHHH-HHHHTT--EEEE-CTGGGG---SSS--EE
T ss_pred eeeeeeeeecCcHHHhhhHHHhcCC-----cchhHHhhhhhc---CCcee-eeecCCcccccCccccccCcccCCCCcce
Confidence 7999999999999999987776444 567777777532 22211 12111 0011111 2266
Q ss_pred EccCCCHHHHHHHHHhCcEEEEcCC------CCCCChHHHHHHHhCCceEe
Q 016535 340 FYKNLLYRDLVKLLGGAVVGIHSMI------DEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 340 ~~g~v~~~~l~~~~~~adv~v~ps~------~E~~~~~vlEAma~G~PVI~ 384 (388)
.+|..=++|..+.++.+-....-+. .+.+-.+-+|..|||+..|-
T Consensus 258 v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF 308 (355)
T PF11440_consen 258 VYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVF 308 (355)
T ss_dssp EESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEE
T ss_pred ecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeee
Confidence 7777778999999999887776542 34577889999999986653
No 407
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.84 E-value=4.7e+02 Score=24.51 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCCHHHHHHHHHhC----
Q 016535 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA---- 356 (388)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~---g~v~~~~l~~~~~~a---- 356 (388)
++.+.++++..++.. ..+.+.+.-. .+.+.++..++-+.+.+.|.. .|.+. |....+++.++++..
T Consensus 111 ~~~~~~~i~~ak~~G----~~v~~~~eda--~r~~~~~l~~~~~~~~~~g~~-~i~l~DT~G~~~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 111 LEKAVEAVEYAKEHG----LIVEFSAEDA--TRTDIDFLIKVFKRAEEAGAD-RINIADTVGVLTPQKMEELIKKLKENV 183 (363)
T ss_pred HHHHHHHHHHHHHcC----CEEEEEEeec--CCCCHHHHHHHHHHHHhCCCC-EEEEeCCCCccCHHHHHHHHHHHhccc
Confidence 344445555554442 2333333222 222455555665666666653 45442 555555555544442
Q ss_pred cEEEEcCCCCCCChH---HHHHHHhCCceE
Q 016535 357 VVGIHSMIDEHFGIS---VVEYMAAGAIPI 383 (388)
Q Consensus 357 dv~v~ps~~E~~~~~---vlEAma~G~PVI 383 (388)
++-+--.....+|+. .++|+.+|.-.|
T Consensus 184 ~~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 184 KLPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred CceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 222222233444544 367777776554
No 408
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=29.71 E-value=2.4e+02 Score=25.22 Aligned_cols=97 Identities=8% Similarity=-0.100 Sum_probs=55.3
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
..|+..|.- ..+.+++...++++ .++++++.-+-|..+.. .+.+...+.|++ |++.. +..+
T Consensus 109 ~~ILT~~~S------~~v~~~l~~a~~~~----~~~~V~v~es~P~~eG~----~~a~~L~~~gi~--v~~i~---d~~~ 169 (282)
T PF01008_consen 109 DTILTHGYS------STVERFLLSAKKKG----KKFRVIVLESRPYNEGR----LMAKELAEAGIP--VTLIP---DSAV 169 (282)
T ss_dssp EEEEEES--------SHHHHHHHHHHHTT----EEEEEEEE--TTTTHHH----THHHHHHHTT-E--EEEE----GGGH
T ss_pred eEEEEeCCc------hHHHHHHHHHHHcC----CeEEEEEccCCcchhhh----hHHHHhhhccee--EEEEe---chHH
Confidence 567777753 23556666655543 57899888876655432 333333445655 55544 4788
Q ss_pred HHHHHh-CcEEEEcCC--CCCCC--------hHHHHHHHhCCceEee
Q 016535 350 VKLLGG-AVVGIHSMI--DEHFG--------ISVVEYMAAGAIPIGK 385 (388)
Q Consensus 350 ~~~~~~-adv~v~ps~--~E~~~--------~~vlEAma~G~PVI~~ 385 (388)
..+++. +|.++.... .+.-+ ...+=|-.+++||++-
T Consensus 170 ~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 170 GYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp HHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEE
Confidence 999999 998887642 23322 2246777889999874
No 409
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=29.68 E-value=79 Score=26.93 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=23.9
Q ss_pred ccceEEEeccccCCCCChhhHHHHHHHHHhhcCC
Q 016535 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESP 66 (388)
Q Consensus 33 ~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~ 66 (388)
.+++|+++.|+....-..+.++-.+.+.|.+.|.
T Consensus 53 ~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv 86 (204)
T PF09861_consen 53 PGKRVAIVVDDITRPTPSDLILPALLEELEEAGV 86 (204)
T ss_dssp T-SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-
T ss_pred CCCeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3589999999988775677888899999999884
No 410
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=29.51 E-value=2.2e+02 Score=23.66 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=35.7
Q ss_pred EEEEcccCC-CCChHHHHHHHHHHHHHhcCCCCCcEEEE-EeCCCCC-------ccHHHHHHHHHHHHhcCCC-CcEEEc
Q 016535 272 IISVAQFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQF-VGSCRNK-------SDEERLQSLKDKSIELKVD-GNVEFY 341 (388)
Q Consensus 272 il~vgrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~l~i-vG~~~~~-------~~~~~~~~l~~~~~~~~l~-~~V~~~ 341 (388)
-+|.|++.| +.|+..+++.+... -+ ++++ +|+.+.. ...+..+-+++...+.+++ ++|.+.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~--------~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~ 72 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEK--------AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFR 72 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHH--------CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEE
Confidence 378999996 89999888765544 24 4444 5665221 1223444455555665553 355555
Q ss_pred c
Q 016535 342 K 342 (388)
Q Consensus 342 g 342 (388)
+
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 4
No 411
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.48 E-value=1.7e+02 Score=21.84 Aligned_cols=52 Identities=12% Similarity=-0.050 Sum_probs=32.0
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHH--hCcEEEEcC
Q 016535 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSM 363 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~--~adv~v~ps 363 (388)
++++|+|-. ..-..+.+++.+++.|++-.|.-.+. .++.+... .+|+++...
T Consensus 5 LlvCg~G~S--TSlla~k~k~~~~e~gi~~~i~a~~~---~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 5 LIICAAGMS--SSMMAKKTTEYLKEQGKDIEVDAITA---TEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred EEECCCchH--HHHHHHHHHHHHHHCCCceEEEEecH---HHHHHhhccCCCCEEEECh
Confidence 455665531 33466778888888888744444443 56666544 488777764
No 412
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=29.42 E-value=94 Score=28.43 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=24.2
Q ss_pred HHHHHHHHhCcEEEE--cCCCCC---CChHHHHHHHhCCceEee
Q 016535 347 RDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 347 ~~l~~~~~~adv~v~--ps~~E~---~~~~vlEAma~G~PVI~~ 385 (388)
.++.++++.||+++. |...|+ ++-..++.|--|.-.|-+
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 468889999996653 444555 444466666655554433
No 413
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=29.38 E-value=86 Score=29.42 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=29.4
Q ss_pred cCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEec
Q 016535 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (388)
Q Consensus 31 ~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~ 75 (388)
-+++|+|++. ||.+.+=..+++.|.++| ++|+.+..
T Consensus 18 ~~~~~~IlVt-------GgtGfIG~~l~~~L~~~G--~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICIT-------GAGGFIASHIARRLKAEG--HYIIASDW 53 (370)
T ss_pred CCCCCEEEEE-------CCccHHHHHHHHHHHhCC--CEEEEEEe
Confidence 3467888877 788888899999999999 77777764
No 414
>PRK06932 glycerate dehydrogenase; Provisional
Probab=29.30 E-value=88 Score=28.68 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=25.7
Q ss_pred HHHHHHHHhCcEEEE--cCCCCC---CChHHHHHHHhCCceEeeC
Q 016535 347 RDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 347 ~~l~~~~~~adv~v~--ps~~E~---~~~~vlEAma~G~PVI~~~ 386 (388)
.++.++++.||+++. |...|+ ++-..++.|--|.-+|-+.
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 468889999996663 444455 4445777776666555443
No 415
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=29.22 E-value=59 Score=22.94 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 016535 11 VITAVLASILILASHVHN 28 (388)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (388)
-||+|++.|++|+.+.|-
T Consensus 29 tILivLVIIiLlImlfqs 46 (85)
T PF10717_consen 29 TILIVLVIIILLIMLFQS 46 (85)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356667767777766664
No 416
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=29.15 E-value=4.6e+02 Score=25.54 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHH-HHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE-----------------cc
Q 016535 281 EKAHPLQLEAFSVAL-RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-----------------YK 342 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~-~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~-----------------~g 342 (388)
..|.+.+++++-... .+.. .++-.+.++|+.. +....++++++.++.|+.-|+.+ .|
T Consensus 144 ~~G~~~a~~ali~~~~~~~~--~~~~~VNii~~~~---~~gD~~eik~lL~~~Gl~vn~l~d~~~~d~~~~~~~~~~~~g 218 (457)
T TIGR02932 144 VTGYAECVKSVIKTIAAKKG--EPSGKLNVFPGWV---NPGDVVLLKHYFSEMGVDANILMDTEDFDSPMLPDKSIFTHG 218 (457)
T ss_pred HHHHHHHHHHHHHHHhhccC--CCCCcEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCccccCCC
Confidence 468888887776433 2211 1344577777542 23346689999999999866642 34
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCCceEee
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGAIPIGK 385 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~PVI~~ 385 (388)
.-+-+++.+. .+|.+-+..+..+ |..+.|+| .+|+|-+..
T Consensus 219 ~ts~~~i~~~-~~A~~nlv~~~~~--g~~~A~~Lee~fGiPy~~~ 260 (457)
T TIGR02932 219 RTTVEDIADS-ANAIATLALAKYE--GGNTAEFLQETFDVPSILV 260 (457)
T ss_pred CCCHHHHHhh-hhCcEEEEEcccc--hHHHHHHHHHHHCCCeecc
Confidence 5666788776 5555444433333 35556666 368887643
No 417
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=29.11 E-value=1.4e+02 Score=19.43 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 323 ~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
..+.++++.+|- .+.+.++. ...-+|. .+..|-..-.|...|.|||.+++
T Consensus 14 ~~l~~~i~~~Gg----~~~~~lt~--------~~THLI~---~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 14 SQLRKLIEALGG----KYSKDLTK--------KTTHLIC---SSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp CHHHHHHHCTT-----EEESSSST--------T-SEEEE---ES--HHHHHHHHHCTSEEEEHHH
T ss_pred HHHHHHHHHCCC----EEeccccC--------CceEEEE---eCCCcHHHHHHHHCCCcEECCCC
Confidence 388888888763 44454422 4555555 45566778889999999998763
No 418
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=29.05 E-value=1.1e+02 Score=26.98 Aligned_cols=85 Identities=6% Similarity=-0.011 Sum_probs=51.7
Q ss_pred EEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--CHHHHH
Q 016535 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--LYRDLV 350 (388)
Q Consensus 273 l~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v--~~~~l~ 350 (388)
||+|-+.-.-|...+-+.+..|++++ ++.|+|+-+.+.........+.-+..-++|++ |.-.|.- ++.|+.
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-----~~DfVIaNgENaa~G~Git~~~~~~L~~~GvD--viT~GNH~wdkkei~ 73 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-----GIDFVIANGENAAGGFGITPKIAEELFKAGVD--VITMGNHIWDKKEIF 73 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG-------G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-S--EEE--TTTTSSTTHH
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-----CCCEEEECCcccCCCCCCCHHHHHHHHhcCCC--EEecCcccccCcHHH
Confidence 56777777778889999999999886 78889887654332223333444445566875 7767765 478999
Q ss_pred HHHHhCcEEEEcCC
Q 016535 351 KLLGGAVVGIHSMI 364 (388)
Q Consensus 351 ~~~~~adv~v~ps~ 364 (388)
+++...+-+|=|.-
T Consensus 74 ~~i~~~~~ilRPaN 87 (253)
T PF13277_consen 74 DFIDKEPRILRPAN 87 (253)
T ss_dssp HHHHH-SSEE--TT
T ss_pred HHHhcCCCcEECCC
Confidence 99999888887753
No 419
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.05 E-value=1.7e+02 Score=27.50 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=30.4
Q ss_pred HHhhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCC-----CceEEEEecCC
Q 016535 25 HVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESP-----DLDCIVYTGDH 77 (388)
Q Consensus 25 ~~~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~-----~~~v~v~~~~~ 77 (388)
+.||.|.+ +++|+++ |++..-.-++..|.++|. +|+|.++..+.
T Consensus 3 ~~~~~~~~-~~ki~Vi--------GaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 3 LFQKLRCG-PLKVSVI--------GSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred chhhcccC-CCeEEEE--------CCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 45777766 5889987 344555568888888862 36788887654
No 420
>PF12669 P12: Virus attachment protein p12 family
Probab=29.04 E-value=69 Score=21.01 Aligned_cols=10 Identities=0% Similarity=0.438 Sum_probs=4.4
Q ss_pred HHHHHhhccc
Q 016535 22 LASHVHNARR 31 (388)
Q Consensus 22 ~~~~~~~~~~ 31 (388)
+..+++++++
T Consensus 17 ~r~~~k~~K~ 26 (58)
T PF12669_consen 17 IRKFIKDKKK 26 (58)
T ss_pred HHHHHHHhhc
Confidence 3444444443
No 421
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=29.00 E-value=33 Score=25.91 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHHHH--hCcEEEEcCCCCCCChHHHHHHHhCCceEeeCC
Q 016535 348 DLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIGKHF 387 (388)
Q Consensus 348 ~l~~~~~--~adv~v~ps~~E~~~~~vlEAma~G~PVI~~~~ 387 (388)
++.+++. ..|++|=.+..|...--+.+++..|+.||+.|-
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANK 91 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-H
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECH
Confidence 3344444 799999776666655567899999999999873
No 422
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=28.97 E-value=2e+02 Score=24.24 Aligned_cols=62 Identities=26% Similarity=0.178 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC----------CCCChHHHHHHHhCCceEee
Q 016535 318 DEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID----------EHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 318 ~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~----------E~~~~~vlEAma~G~PVI~~ 385 (388)
+.++...+.+..++.+.+-.+.... +.++ +..+|.+++|--. +++--.+.+++..|+|+++-
T Consensus 12 ~~e~~~~~~~~l~~~g~~~~~~~~~--~~~~----l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGI 83 (200)
T PRK13527 12 VEEHIDALKRALDELGIDGEVVEVR--RPGD----LPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGT 83 (200)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEeC--ChHH----hccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEE
Confidence 5566677777777777653333332 2222 3568877777421 11222356777889999863
No 423
>PLN00016 RNA-binding protein; Provisional
Probab=28.95 E-value=70 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=30.7
Q ss_pred ccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 33 ~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
++++|++...+. ||.+.+=..+++.|.++| |+|++++...
T Consensus 51 ~~~~VLVt~~~~---GatG~iG~~lv~~L~~~G--~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNS---GGHAFIGFYLAKELVKAG--HEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccC---CCceeEhHHHHHHHHHCC--CEEEEEecCC
Confidence 456788877777 677777778889999999 8888887553
No 424
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.93 E-value=41 Score=21.94 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=12.7
Q ss_pred HHHHHHHhCCceEee
Q 016535 371 SVVEYMAAGAIPIGK 385 (388)
Q Consensus 371 ~vlEAma~G~PVI~~ 385 (388)
.+.|++-.|.||+|-
T Consensus 16 kI~esav~G~pVvAL 30 (58)
T PF11238_consen 16 KIAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHHhcCceeEee
Confidence 378999999999873
No 425
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=28.92 E-value=92 Score=24.30 Aligned_cols=37 Identities=22% Similarity=-0.013 Sum_probs=21.0
Q ss_pred HHHHHhCcEEEEc--CCCCCCChH--HHHHHHhCCceEeeC
Q 016535 350 VKLLGGAVVGIHS--MIDEHFGIS--VVEYMAAGAIPIGKH 386 (388)
Q Consensus 350 ~~~~~~adv~v~p--s~~E~~~~~--vlEAma~G~PVI~~~ 386 (388)
..++..||+.|.- -.|-.+.-+ .==|.|.|+|.|.-.
T Consensus 70 ~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh 110 (144)
T TIGR03646 70 RKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILR 110 (144)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 4577889977743 222222111 123568899998753
No 426
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=28.86 E-value=2.7e+02 Score=25.92 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=50.1
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCC-CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLP-RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~-~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~ 347 (388)
+..+..+|. .. | ...++++..+ + +++++-+-+. +. ++.++.+++++++ . + .
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~~~--------~~~~eLvaV~d~----~~---erA~~~A~~~gi~----~--y---~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFAAA--------PERFELAGILAQ----GS---ERSRALAHRLGVP----L--Y---C 54 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHHhC--------CCCcEEEEEEcC----CH---HHHHHHHHHhCCC----c--c---C
Confidence 356777775 22 2 2355666554 4 6777666543 22 2566777777653 1 2 3
Q ss_pred HHHHHHHhCc--EEEEcCC-CCCCCh-HHHHHHHhCCceEee
Q 016535 348 DLVKLLGGAV--VGIHSMI-DEHFGI-SVVEYMAAGAIPIGK 385 (388)
Q Consensus 348 ~l~~~~~~ad--v~v~ps~-~E~~~~-~vlEAma~G~PVI~~ 385 (388)
++.+++...| ++..|+. .-+... ...+|+.+|+.|++-
T Consensus 55 ~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~E 96 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQE 96 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEc
Confidence 4444555555 3334432 223332 367899999999974
No 427
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=28.80 E-value=2.1e+02 Score=24.97 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=34.5
Q ss_pred CCCcEEEccC-CCH---HHHHHHHHhCcEEEE-cCCCCCCChH-HHHHHHhCCceEeeCC
Q 016535 334 VDGNVEFYKN-LLY---RDLVKLLGGAVVGIH-SMIDEHFGIS-VVEYMAAGAIPIGKHF 387 (388)
Q Consensus 334 l~~~V~~~g~-v~~---~~l~~~~~~adv~v~-ps~~E~~~~~-vlEAma~G~PVI~~~~ 387 (388)
+.++|.+.|. +|. +...+..+.||++|. -+...-+|.. +.+++..|.|+|.-|.
T Consensus 150 lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~ 209 (235)
T cd01408 150 VKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINR 209 (235)
T ss_pred ccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeC
Confidence 3467888886 454 334456778996664 4555555544 4566778899887653
No 428
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=28.70 E-value=1e+02 Score=20.79 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Q 016535 9 WAVITAVLASILILASHVHNARRN 32 (388)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+.+||.+++-+-..|..+|+...+
T Consensus 20 vvLLLsIl~~lt~~ai~~Qq~~At 43 (66)
T PF13179_consen 20 VVLLLSILAFLTYWAIKVQQEQAT 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666668888887654
No 429
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=28.43 E-value=56 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH-hhcccC
Q 016535 3 PYGILIWAVITAVLASILILASHV-HNARRN 32 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 32 (388)
|-..+-|.|+..+++.++.++... +|.|+|
T Consensus 18 P~a~GWwll~~lll~~~~~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 18 PLAPGWWLLLALLLLLLILLLWRLWRRWRRN 48 (146)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556677755555444444444444 333344
No 430
>PRK06756 flavodoxin; Provisional
Probab=28.29 E-value=1e+02 Score=24.42 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=24.7
Q ss_pred ceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEE
Q 016535 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (388)
Q Consensus 35 ~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~ 73 (388)
|+|+++. ....|-.+.++..+++.|.+.| +++.++
T Consensus 2 mkv~IiY--~S~tGnTe~vA~~ia~~l~~~g--~~v~~~ 36 (148)
T PRK06756 2 SKLVMIF--ASMSGNTEEMADHIAGVIRETE--NEIEVI 36 (148)
T ss_pred ceEEEEE--ECCCchHHHHHHHHHHHHhhcC--CeEEEe
Confidence 3555542 2234699999999999999999 665554
No 431
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=28.24 E-value=2.9e+02 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGS 312 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~ 312 (388)
.+++.+.+..++. ++.+.+...
T Consensus 16 ~~~~~~~~~a~~~-----g~~~~~~~~ 37 (273)
T cd06309 16 AETKSIKDAAEKR-----GFDLKFADA 37 (273)
T ss_pred HHHHHHHHHHHhc-----CCEEEEeCC
Confidence 3445555554442 677777654
No 432
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=28.22 E-value=1.7e+02 Score=26.07 Aligned_cols=69 Identities=20% Similarity=0.066 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCce
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIP 382 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PV 382 (388)
++++++.+-+. +.+ +.++.+++++.. .. .+++.+++..+|+++..+..+.-.-...+++..|++|
T Consensus 30 ~~~el~aV~dr----~~~---~a~~~a~~~g~~---~~-----~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~V 94 (271)
T PRK13302 30 PGLTLSAVAVR----DPQ---RHADFIWGLRRP---PP-----VVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKA 94 (271)
T ss_pred CCeEEEEEECC----CHH---HHHHHHHhcCCC---cc-----cCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcE
Confidence 56777755532 222 344555554421 11 1344455678998887766554444568889999999
Q ss_pred EeeC
Q 016535 383 IGKH 386 (388)
Q Consensus 383 I~~~ 386 (388)
++..
T Consensus 95 i~~s 98 (271)
T PRK13302 95 IVLS 98 (271)
T ss_pred EEec
Confidence 9754
No 433
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=28.15 E-value=2.2e+02 Score=20.10 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHH
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG 354 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~ 354 (388)
..+++++.... +....+.+..++++.++| +.+.+ +.+|+-....
T Consensus 27 kaklViiA~D~---~~~~~~~i~~~c~~~~Vp--~~~~~--s~~eLG~a~G 70 (82)
T PRK13602 27 SVKEVVVAEDA---DPRLTEKVEALANEKGVP--VSKVD--SMKKLGKACG 70 (82)
T ss_pred CeeEEEEECCC---CHHHHHHHHHHHHHcCCC--EEEEC--CHHHHHHHHC
Confidence 67888887643 445788899999999887 66666 4577766543
No 434
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.02 E-value=2.7e+02 Score=26.51 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcE
Q 016535 281 EKAHPLQLEAFSVALRKLDA--DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~--~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv 358 (388)
..|.+.+++++......... ...+-.+.++|......| ..+++++.++.|++.+..+.+.-+-+|+.+.- +|.+
T Consensus 133 ~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d---~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~-~A~l 208 (410)
T cd01968 133 NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGE---LWGVKPLLEKLGIRVLASITGDSRVDEIRRAH-RAKL 208 (410)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCccc---HHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhh-hCcE
Confidence 46777777766644322111 001467888886543322 45899999999998777888887778887744 4443
Q ss_pred EEEcCCCCCCChHHHHHH--HhCCceEe
Q 016535 359 GIHSMIDEHFGISVVEYM--AAGAIPIG 384 (388)
Q Consensus 359 ~v~ps~~E~~~~~vlEAm--a~G~PVI~ 384 (388)
-+..+.. .+..+.|.| .+|.|.+.
T Consensus 209 niv~~~~--~~~~~a~~L~~~fGip~~~ 234 (410)
T cd01968 209 NVVQCSK--SMIYLARKMEEKYGIPYIE 234 (410)
T ss_pred EEEEchh--HHHHHHHHHHHHhCCCeEe
Confidence 3332211 223345555 46887764
No 435
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.93 E-value=3.8e+02 Score=22.77 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=4.0
Q ss_pred CcEEEEEe
Q 016535 304 RPRLQFVG 311 (388)
Q Consensus 304 ~~~l~ivG 311 (388)
++.+.+.-
T Consensus 29 g~~~~~~~ 36 (264)
T cd06267 29 GYSVLLCN 36 (264)
T ss_pred CCEEEEEc
Confidence 45555543
No 436
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=27.87 E-value=86 Score=30.60 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=29.6
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.+|...++.|+.++. +....+-.+-+.. |++ +++||..+|+|+|+
T Consensus 335 ~nV~~~~W~PQ~~ll--l~H~~v~~FvTHg-G~n-St~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLL--LDHPAVGGFVTHG-GWN-STLESIYSGVPMVC 379 (496)
T ss_pred CceEEecCCCcHHHh--cCCCcCcEEEECC-ccc-HHHHHHhcCCceec
Confidence 479999999988866 3333233333222 333 45999999999994
No 437
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=27.76 E-value=3.3e+02 Score=22.06 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=11.7
Q ss_pred EEEcccCC-CCChHHHHHHHHHH
Q 016535 273 ISVAQFRP-EKAHPLQLEAFSVA 294 (388)
Q Consensus 273 l~vgrl~~-~Kg~~~ll~a~~~l 294 (388)
+|.|++.| ++|+..+++.+.+.
T Consensus 3 v~~G~FdP~H~GHl~~i~~a~~~ 25 (163)
T cd02166 3 LFIGRFQPFHLGHLKVIKWILEE 25 (163)
T ss_pred EEeeccCCCCHHHHHHHHHHHHH
Confidence 45566654 55555555544443
No 438
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=27.71 E-value=1.2e+02 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.8
Q ss_pred ChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 49 GGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
|-..+..+|+.+|++.| .+|.++-.+.
T Consensus 30 GKTt~a~~LA~~la~~G--~rVllID~D~ 56 (204)
T TIGR01007 30 GKSTTSANIAVAFAQAG--YKTLLIDGDM 56 (204)
T ss_pred CHHHHHHHHHHHHHhCC--CeEEEEeCCC
Confidence 56678899999999999 7888776553
No 439
>PLN02928 oxidoreductase family protein
Probab=27.58 E-value=81 Score=29.40 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCcEEEE--cCCCCC---CChHHHHHHHhCCceEee
Q 016535 346 YRDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 346 ~~~l~~~~~~adv~v~--ps~~E~---~~~~vlEAma~G~PVI~~ 385 (388)
..++.++++.||+++. |...|+ ++-..++.|.-|.-+|-+
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEEC
Confidence 4688999999997775 334444 344466777666555443
No 440
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=27.52 E-value=2.4e+02 Score=26.77 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC--------CCHHHHHHHHHhCcEEEE--cCCC----CCC
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN--------LLYRDLVKLLGGAVVGIH--SMID----EHF 368 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--------v~~~~l~~~~~~adv~v~--ps~~----E~~ 368 (388)
.+-++-|+|-|.-. ..+.+.++.+|+. |..... ....++.++++.||++++ |... ++.
T Consensus 115 ~gktvGIIG~G~IG------~~va~~l~a~G~~--V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 115 AERTYGVVGAGHVG------GRLVRVLRGLGWK--VLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred CcCEEEEECCCHHH------HHHHHHHHHCCCE--EEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 45788899977432 2566666677764 544432 123467889999996653 3333 233
Q ss_pred Ch---HHHHHHHhCCceEeeC
Q 016535 369 GI---SVVEYMAAGAIPIGKH 386 (388)
Q Consensus 369 ~~---~vlEAma~G~PVI~~~ 386 (388)
++ ..++.|.-|.-+|-+.
T Consensus 187 ~li~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINAS 207 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECC
Confidence 33 4777777776555443
No 441
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.50 E-value=3.5e+02 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=18.7
Q ss_pred cCccceEEEeccccCCCCChhhHHHHHHHHHhhc
Q 016535 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE 64 (388)
Q Consensus 31 ~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~ 64 (388)
+++.+.|++| +.+.| +-.++.++.+.|-+.
T Consensus 2 ~~~~~~IgvF--DSGVG--GLsVlrei~~~LP~e 31 (269)
T COG0796 2 SEPQPPIGVF--DSGVG--GLSVLREIRRQLPDE 31 (269)
T ss_pred CccCCeEEEE--ECCCC--cHHHHHHHHHHCCCC
Confidence 4567889999 45433 455666666665443
No 442
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=27.49 E-value=4.5e+02 Score=23.52 Aligned_cols=91 Identities=13% Similarity=-0.012 Sum_probs=54.1
Q ss_pred EcccC-CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016535 275 VAQFR-PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (388)
Q Consensus 275 vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~ 353 (388)
.|-.+ ..-|=+.+++++- .+- .++.+++++.. +.+.. .+.+ +|.-....+..++.+.+
T Consensus 4 ~GyyG~~N~GDe~~l~~~l--~~l----~~~~~~~v~s~-----~p~~~------~~~~----~v~~~~r~~~~~~~~~l 62 (298)
T TIGR03609 4 CGYYGFGNLGDEALLAALL--REL----PPGVEPTVLSN-----DPAET------AKLY----GVEAVNRRSLLAVLRAL 62 (298)
T ss_pred EEecCCCCcchHHHHHHHH--Hhc----CCCCeEEEecC-----ChHHH------Hhhc----CceEEccCCHHHHHHHH
Confidence 34444 3567788888773 222 25788888764 22211 2233 34555566667889999
Q ss_pred HhCcEEEEcC--C-CCCCCh--------HHHHHHHhCCceEeeC
Q 016535 354 GGAVVGIHSM--I-DEHFGI--------SVVEYMAAGAIPIGKH 386 (388)
Q Consensus 354 ~~adv~v~ps--~-~E~~~~--------~vlEAma~G~PVI~~~ 386 (388)
..+|++|... . .+..+. .+.-|..+|+|++...
T Consensus 63 ~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g 106 (298)
T TIGR03609 63 RRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWG 106 (298)
T ss_pred HHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999773 2 222221 2345667899998653
No 443
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=27.28 E-value=1e+02 Score=27.18 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=25.7
Q ss_pred ceEEEeccccCCCC-ChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 35 TSVAFFHPNTNDGG-GGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 35 ~~I~~~~p~~~~gG-G~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
|.|++. ++|| |=-++..+||.+|+++| .+|.++-.++
T Consensus 1 ~~i~v~----gKGGvGKTT~a~nLA~~la~~G--~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVY----GKGGIGKSTTSSNLSVALAKRG--KKVLQIGCDP 38 (267)
T ss_pred CEEEEe----cCCCCCHHHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 566776 2442 33445689999999999 7787776554
No 444
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.98 E-value=3.4e+02 Score=24.68 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCCHHHHHHHHHhC
Q 016535 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 287 ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~v~~~~l~~~~~~a 356 (388)
+-+..+.++.++ ...|.+-.+.+|+ +..+..|.+.-.+.+++.|+. ..+.+....+++|+.+.+...
T Consensus 18 i~~~v~~l~~~~-g~~p~La~i~vg~--~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~l 85 (296)
T PRK14188 18 VAAEVARLKAAH-GVTPGLAVVLVGE--DPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARL 85 (296)
T ss_pred HHHHHHHHHHcc-CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 334444454431 1125566666664 344667999999999999996 334555778899999988865
No 445
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.95 E-value=1.9e+02 Score=27.87 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=49.9
Q ss_pred CcEEEEEeCCCCC-ccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCC
Q 016535 304 RPRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGA 380 (388)
Q Consensus 304 ~~~l~ivG~~~~~-~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~ 380 (388)
+-.+.++|..+.. ......++++++.++.|++.+..|.+..+-+|+.+. .+|++-+..+.. ++..+.|+| .+|+
T Consensus 162 ~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~-~~A~lniv~~~~--~~~~~a~~L~~~~Gi 238 (430)
T cd01981 162 KPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNEL-PKAWFNIVPYRE--YGLSAALYLEEEFGM 238 (430)
T ss_pred CCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhh-hhCeEEEEecHH--HHHHHHHHHHHHhCC
Confidence 3468888875321 123456689999999999888888887777787764 444444432221 245555555 4688
Q ss_pred ceEee
Q 016535 381 IPIGK 385 (388)
Q Consensus 381 PVI~~ 385 (388)
|.+..
T Consensus 239 P~~~~ 243 (430)
T cd01981 239 PSVKI 243 (430)
T ss_pred CeEec
Confidence 87644
No 446
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.95 E-value=2.6e+02 Score=20.51 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC---CcEEEccCCCHHHHHHHHHhCcEE
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD---GNVEFYKNLLYRDLVKLLGGAVVG 359 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~---~~V~~~g~v~~~~l~~~~~~adv~ 359 (388)
=++...++++.|+++ ..++.++-..+.+... ++.+..+++|++ ++|.--+....+-+.+-.....++
T Consensus 15 ~ipga~e~l~~L~~~------g~~~~~lTNns~~s~~----~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~ 84 (101)
T PF13344_consen 15 PIPGAVEALDALRER------GKPVVFLTNNSSRSRE----EYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVY 84 (101)
T ss_dssp E-TTHHHHHHHHHHT------TSEEEEEES-SSS-HH----HHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEE
T ss_pred cCcCHHHHHHHHHHc------CCCEEEEeCCCCCCHH----HHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEE
Confidence 356678888888776 5777777765444322 455555667774 344444433333333333344466
Q ss_pred EEcC
Q 016535 360 IHSM 363 (388)
Q Consensus 360 v~ps 363 (388)
+..+
T Consensus 85 vlG~ 88 (101)
T PF13344_consen 85 VLGS 88 (101)
T ss_dssp EES-
T ss_pred EEcC
Confidence 6554
No 447
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.94 E-value=4.4e+02 Score=23.47 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=40.3
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEE---ccCCCHHHHHHHHHhCc---EEEEc
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF---YKNLLYRDLVKLLGGAV---VGIHS 362 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~---~g~v~~~~l~~~~~~ad---v~v~p 362 (388)
++--++++|-|.+.........|+...++.+.+ |+.+ -|+.+-+++.+-++... +.+.|
T Consensus 140 ~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~-~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~P 204 (262)
T PF06180_consen 140 KDEAVVLMGHGTPHPANAAYSALQAMLKKHGYP-NVFVGTVEGYPSLEDVIARLKKKGIKKVHLIP 204 (262)
T ss_dssp TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-T-TEEEEETTSSSBHHHHHHHHHHHT-SEEEEEE
T ss_pred CCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCC-eEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEe
Confidence 578889999988776666778888888887654 5543 26666778887777755 88877
No 448
>PLN02204 diacylglycerol kinase
Probab=26.93 E-value=2.4e+02 Score=28.44 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=26.7
Q ss_pred EEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecCC
Q 016535 37 VAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (388)
Q Consensus 37 I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~~ 77 (388)
..|++|..+.| .+.+....++..|.+.| +++.++.+.+
T Consensus 163 lVivNP~sGkg-~~~~~~~~V~p~f~~a~--i~~~v~~T~~ 200 (601)
T PLN02204 163 LVFVHPLSGKG-SGSRTWETVSPIFIRAK--VKTKVIVTER 200 (601)
T ss_pred EEEECCCCCCc-chHHHHHHHHHHHHHcC--CeEEEEEecC
Confidence 45789999776 55666668888999999 5555554443
No 449
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.82 E-value=4.6e+02 Score=23.35 Aligned_cols=69 Identities=10% Similarity=-0.072 Sum_probs=49.6
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHHhCcE
Q 016535 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAVV 358 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~v~~~~l~~~~~~adv 358 (388)
...|++.+++.++.. .+.=+++=+-+. +..+++.+.++++|+. .|.+. +.-+.+.+..+.+.++-
T Consensus 104 ~~~G~e~F~~~~~~a---------GvdgviipDLP~----ee~~~~~~~~~~~gi~-~I~lv~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 104 LHYGINKFIKKISQA---------GVKGLIIPDLPY----EESDYLISVCNLYNIE-LILLIAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred HHhCHHHHHHHHHHc---------CCeEEEecCCCH----HHHHHHHHHHHHcCCC-EEEEECCCCCHHHHHHHHHhCCC
Confidence 466999998877766 566666665543 3356888889999996 55555 44557888899999995
Q ss_pred EEEc
Q 016535 359 GIHS 362 (388)
Q Consensus 359 ~v~p 362 (388)
||+.
T Consensus 170 FIY~ 173 (263)
T CHL00200 170 CIYL 173 (263)
T ss_pred cEEE
Confidence 6654
No 450
>PRK06487 glycerate dehydrogenase; Provisional
Probab=26.81 E-value=83 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=24.3
Q ss_pred HHHHHHHhCcEEEE--cCCCCC---CChHHHHHHHhCCceEee
Q 016535 348 DLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 348 ~l~~~~~~adv~v~--ps~~E~---~~~~vlEAma~G~PVI~~ 385 (388)
++.++++.||+++. |...|+ ++-..++.|--|.-+|-+
T Consensus 190 ~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 190 PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT 232 (317)
T ss_pred CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence 57889999996664 444444 444567777666555543
No 451
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.77 E-value=2.6e+02 Score=25.39 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=42.8
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCH----------HHHHHHHHhCcEEEEcCC---------
Q 016535 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY----------RDLVKLLGGAVVGIHSMI--------- 364 (388)
Q Consensus 304 ~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~----------~~l~~~~~~adv~v~ps~--------- 364 (388)
..++.++|+ |.-...-.+++ .+.|.+ |...|+-+. +...+.+..||+++.|..
T Consensus 2 ~~~~~v~gg-----d~r~~~~~~~l-~~~G~~--v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~ 73 (296)
T PRK08306 2 GKHIAVIGG-----DARQLELIRKL-VELGAK--VSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVD 73 (296)
T ss_pred CcEEEEEcC-----cHHHHHHHHHH-HHCCCE--EEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceee
Confidence 356777775 44334333333 444654 665665321 123567899999998821
Q ss_pred ----CCCCCh--HHHHHHHhCCceEee
Q 016535 365 ----DEHFGI--SVVEYMAAGAIPIGK 385 (388)
Q Consensus 365 ----~E~~~~--~vlEAma~G~PVI~~ 385 (388)
.+..++ ..++.|.-|..+++.
T Consensus 74 ~~~~~~~~~~~~~~l~~l~~~~~v~~G 100 (296)
T PRK08306 74 TVFSNEKLVLTEELLELTPEHCTIFSG 100 (296)
T ss_pred ccccccCCcchHHHHHhcCCCCEEEEe
Confidence 122333 478888888766653
No 452
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.75 E-value=1.1e+02 Score=22.53 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=24.8
Q ss_pred cceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 34 ~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
.++++++ |++.+...-++.|.+.| .++++++++
T Consensus 7 ~~~vlVv--------GgG~va~~k~~~Ll~~g--A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVV--------GGGPVAARKARLLLEAG--AKVTVISPE 39 (103)
T ss_dssp T-EEEEE--------EESHHHHHHHHHHCCCT--BEEEEEESS
T ss_pred CCEEEEE--------CCCHHHHHHHHHHHhCC--CEEEEECCc
Confidence 4556666 44566777889999999 899999976
No 453
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=26.46 E-value=1.6e+02 Score=26.40 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=33.9
Q ss_pred hhcccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEecC
Q 016535 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (388)
Q Consensus 27 ~~~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~~ 76 (388)
|+.++++...|+++.|..... -...++..+.+++.+.| +++.+....
T Consensus 28 ~~l~~~~~~~ig~v~~~~~~~-~~~~~~~gi~~~~~~~g--~~~~~~~~~ 74 (309)
T PRK11041 28 RNLKRNESRTILVIVPDICDP-FFSEIIRGIEVTAAEHG--YLVLIGDCA 74 (309)
T ss_pred HHhhcCCCcEEEEEeCCCcCc-cHHHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 566677888999999876543 45556667888888889 777665543
No 454
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=26.37 E-value=4.7e+02 Score=23.40 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEE
Q 016535 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 306 ~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 360 (388)
.+.+.|+-|.. ..+...++.+.+++.|+.-.+..-|..+.+.+.+++...|.+.
T Consensus 128 ~V~~sGGEPll-~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~ 181 (295)
T TIGR02494 128 GVTLSGGEPLL-QPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFL 181 (295)
T ss_pred cEEeeCcchhc-hHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEE
Confidence 46677744433 4555556677777777765555568877777888887778644
No 455
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=26.28 E-value=3e+02 Score=21.14 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhC-cEEE
Q 016535 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA-VVGI 360 (388)
Q Consensus 282 Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~a-dv~v 360 (388)
.|....++++++ ....++++..... ..+..+.+..++++.+++ +.+.+. .+++-...... .+.+
T Consensus 33 ~G~~~v~kaikk---------gkakLVilA~D~s--~~~i~~~~~~lc~~~~Vp--~~~~~t--k~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 33 KGTNETTKAVER---------GIAKLVVIAEDVD--PEEIVAHLPLLCEEKKIP--YVYVPS--KKDLGKAAGLEVGAAA 97 (122)
T ss_pred EcHHHHHHHHHc---------CCccEEEEeCCCC--hHHHHHHHHHHHHHcCCC--EEEECC--HHHHHHHhCCCCCeEE
Confidence 455555555542 2678888776321 123457899999999988 777774 58999988876 4444
Q ss_pred EcCCCCCCChHHHHH
Q 016535 361 HSMIDEHFGISVVEY 375 (388)
Q Consensus 361 ~ps~~E~~~~~vlEA 375 (388)
..-..+|+.-.+++.
T Consensus 98 vaI~d~g~a~~~~~~ 112 (122)
T PRK04175 98 AAIVDAGKAKELVED 112 (122)
T ss_pred EEEechhhhHHHHHH
Confidence 444456666555443
No 456
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.97 E-value=5.7e+02 Score=24.61 Aligned_cols=102 Identities=7% Similarity=-0.016 Sum_probs=54.0
Q ss_pred CCCChHHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcE-----------------EEc
Q 016535 280 PEKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-----------------EFY 341 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~-l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V-----------------~~~ 341 (388)
...|.+.+++|+-. +.........+-.+.++|+..... +..++++++.++.|++.++ .+.
T Consensus 135 ~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~--d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~ 212 (435)
T cd01974 135 HITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYA--GNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYP 212 (435)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCc--chHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccC
Confidence 34788888887763 322110001233566777543221 2356899999999998543 123
Q ss_pred cCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHH--hCCceEeeC
Q 016535 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAIPIGKH 386 (388)
Q Consensus 342 g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma--~G~PVI~~~ 386 (388)
|.-+-+|+.+. .+|.+-+..+.+ .+....++|. +|+|.+...
T Consensus 213 gg~~~~~i~~~-~~A~~niv~~~~--~~~~~a~~Le~~~giP~~~~~ 256 (435)
T cd01974 213 GGTTLEELKDA-GNAKATLALQEY--ATEKTAKFLEKKCKVPVETLN 256 (435)
T ss_pred CCCCHHHHHhh-ccCcEEEEECcc--ccHHHHHHHHHHhCCCeeecC
Confidence 34455666653 334443333222 2334455543 688877543
No 457
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=25.71 E-value=4.4e+02 Score=22.80 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGS 312 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~ 312 (388)
..+++.+.+...+. ..+.+.+...
T Consensus 15 ~~~~~~i~~~~~~~----~g~~~~~~~~ 38 (270)
T cd06308 15 AAMNDEIQREASNY----PDVELIIADA 38 (270)
T ss_pred HHHHHHHHHHHHhc----CCcEEEEEcC
Confidence 34445554444431 2455555543
No 458
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.70 E-value=3.9e+02 Score=23.90 Aligned_cols=11 Identities=18% Similarity=-0.121 Sum_probs=5.0
Q ss_pred HHHhCCceEee
Q 016535 375 YMAAGAIPIGK 385 (388)
Q Consensus 375 Ama~G~PVI~~ 385 (388)
+...|.|||..
T Consensus 78 ~~~~giPvV~~ 88 (305)
T cd06324 78 AEGAGVKLFLV 88 (305)
T ss_pred HHhCCCeEEEE
Confidence 34445555443
No 459
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=25.67 E-value=4e+02 Score=23.69 Aligned_cols=69 Identities=9% Similarity=-0.074 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC-CCHHHHHHHHHhCcE
Q 016535 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-LLYRDLVKLLGGAVV 358 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-v~~~~l~~~~~~adv 358 (388)
...|.+.+++.++.. .+.=+|+=+-+..+ .+++.+.++++|+. .|.|... .+.+.+..+.+.++-
T Consensus 100 ~~~G~e~F~~~~~~a---------GvdGlIipDLP~ee----~~~~~~~~~~~gl~-~I~lv~p~t~~~Ri~~i~~~a~g 165 (259)
T PF00290_consen 100 FQYGIERFFKEAKEA---------GVDGLIIPDLPPEE----SEELREAAKKHGLD-LIPLVAPTTPEERIKKIAKQASG 165 (259)
T ss_dssp HHH-HHHHHHHHHHH---------TEEEEEETTSBGGG----HHHHHHHHHHTT-E-EEEEEETTS-HHHHHHHHHH-SS
T ss_pred hccchHHHHHHHHHc---------CCCEEEEcCCChHH----HHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHHhCCc
Confidence 456888888777766 56667777665443 45788888999995 7777755 678888888888887
Q ss_pred EEEc
Q 016535 359 GIHS 362 (388)
Q Consensus 359 ~v~p 362 (388)
||+.
T Consensus 166 FiY~ 169 (259)
T PF00290_consen 166 FIYL 169 (259)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 460
>PRK07742 phosphate butyryltransferase; Validated
Probab=25.65 E-value=4.7e+02 Score=23.74 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=47.2
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCCCHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYR 347 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l--~~~V~~~g~v~~~ 347 (388)
.++.+...-+ +..++|..+..+++ ..+++++| +.+ .+++.++++++ .+++++...-+.+
T Consensus 16 ~ri~~~~~~d-----~~vl~Aa~~a~~e~-----~~~~iLvG------~~~---~I~~~~~~~~l~~~~~~~Ii~~~~~~ 76 (299)
T PRK07742 16 KTVAVAVAED-----EEVIEAVAKAIELQ-----LARFRLYG------NQE---KIMGMLQEHGLQTSEHIEIIHAQSSA 76 (299)
T ss_pred CeEEEeCCCC-----HHHHHHHHHHHHcC-----CceEEEEC------CHH---HHHHHHHHCCCCCCCCcEEECCCCHH
Confidence 4566655322 56788888777764 48999999 443 66777777766 3456666543322
Q ss_pred H----HHHHHH--hCcEEEEcC
Q 016535 348 D----LVKLLG--GAVVGIHSM 363 (388)
Q Consensus 348 ~----l~~~~~--~adv~v~ps 363 (388)
+ -..+.+ .+|+++...
T Consensus 77 ~s~~~a~~lV~~G~aD~lvsG~ 98 (299)
T PRK07742 77 EAAELAVKAVRNGEADVLMKGN 98 (299)
T ss_pred HHHHHHHHHHHCCCCCEEEECC
Confidence 2 134555 789988653
No 461
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=25.62 E-value=4.6e+02 Score=24.82 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHH
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS 329 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~ 329 (388)
.|..+.+.++.+...+. -++.+++.|+|+...|.+..+.-.+.+
T Consensus 170 d~~~~e~a~~vk~V~~a-----v~vPLIL~gsg~~~kD~eVLeaaLe~~ 213 (389)
T TIGR00381 170 DKSPSEAAKVLEDVLQA-----VDVPIVIGGSGNPEKDPLVLEKAAEVA 213 (389)
T ss_pred ccCHHHHHHHHHHHHHh-----CCCCEEEeCCCCCcCCHHHHHHHHHHh
Confidence 46777888888888776 489999999987777766444444433
No 462
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=25.58 E-value=2.3e+02 Score=25.18 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCCHHHHHHHHHhCcEEE
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~v~~~~l~~~~~~adv~v 360 (388)
..+++++.+++++.+...+.++..+|-.- +....++..+..+++|+. |...|+|.++..++.+.++ .|+|.
T Consensus 167 ~~fl~~L~~lQ~~~~~~~~piRtalVTAR----~apah~RvI~TLr~Wgv~vDEafFLgG~~K~~vL~~~~-phIFF 238 (264)
T PF06189_consen 167 KDFLKKLSKLQKKFPPENSPIRTALVTAR----SAPAHERVIRTLRSWGVRVDEAFFLGGLPKGPVLKAFR-PHIFF 238 (264)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEEcC----CCchhHHHHHHHHHcCCcHhHHHHhCCCchhHHHHhhC-CCEee
Confidence 56788899998886655677888888764 222335777778888885 5678999998887776664 34444
No 463
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.54 E-value=2.6e+02 Score=24.10 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=16.1
Q ss_pred EEEccCCCHHHHHHHHHh-CcEEEEcC
Q 016535 338 VEFYKNLLYRDLVKLLGG-AVVGIHSM 363 (388)
Q Consensus 338 V~~~g~v~~~~l~~~~~~-adv~v~ps 363 (388)
|..-|.++.+++.++.++ ||.++.-|
T Consensus 170 I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 170 LEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 555666666666666654 67666655
No 464
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.52 E-value=6.1e+02 Score=24.38 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcE------------------EEcc
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV------------------EFYK 342 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V------------------~~~g 342 (388)
..|.+.+++++-....... .++-.+.++|... .....++++++.++.|+..++ .+.|
T Consensus 134 ~~G~~~a~~al~~~~~~~~--~~~~~VNlig~~~---~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~ 208 (429)
T cd03466 134 VEGYDTAVRSIVKNIAVDP--DKIEKINVIAGMM---SPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSG 208 (429)
T ss_pred HHHHHHHHHHHHHHhccCC--CCCCcEEEECCCC---ChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCC
Confidence 3677777776653222111 1355678887543 223466899999999987321 1123
Q ss_pred CCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHH--HhCCceEe
Q 016535 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGAIPIG 384 (388)
Q Consensus 343 ~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAm--a~G~PVI~ 384 (388)
.-+-+++.+ +.+|++-+.-+.+...+...-|+| .+|+|.+.
T Consensus 209 g~~~~~i~~-~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~ 251 (429)
T cd03466 209 GTPISEIKG-MGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYR 251 (429)
T ss_pred CCCHHHHHh-hccCcEEEEEccCccchHHHHHHHHHHHCCCeee
Confidence 445566665 344444333333334466666666 47888654
No 465
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.49 E-value=4.4e+02 Score=22.74 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=22.5
Q ss_pred CcEEEccCCCHHHHHHHH-HhCcEEEEcCC
Q 016535 336 GNVEFYKNLLYRDLVKLL-GGAVVGIHSMI 364 (388)
Q Consensus 336 ~~V~~~g~v~~~~l~~~~-~~adv~v~ps~ 364 (388)
-.++.=|.+..+.+.++. +.||++|..|.
T Consensus 170 ~~IeVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 170 ILIEVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred eEEEEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 457777888888888877 67889988873
No 466
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=25.44 E-value=2.4e+02 Score=20.02 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHhhcC-CCceEEEEecC
Q 016535 49 GGERVLWCAVKAIQEES-PDLDCIVYTGD 76 (388)
Q Consensus 49 G~~~~~~~l~~~L~~~g-~~~~v~v~~~~ 76 (388)
|++++-..+++.|.+.| ..+++.+.+..
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 66688888999999988 34566655443
No 467
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.39 E-value=3.2e+02 Score=24.65 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCc-EEEccCCCHHHHHHHHHhC
Q 016535 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN-VEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 288 l~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~-V~~~g~v~~~~l~~~~~~a 356 (388)
-+..+.++++.. .|.+-.+.+|+ +..+..|.+.-.+.+++.|+.-. +++....+++|+.+.+...
T Consensus 19 k~~i~~l~~~g~--~P~Laii~vg~--d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (284)
T PRK14170 19 TREVAELVKEGK--KPGLAVVLVGD--NQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEEL 84 (284)
T ss_pred HHHHHHHHhCCC--CCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444321 25555666664 44466799999999999999643 4555677788888888753
No 468
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.36 E-value=3.7e+02 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=14.4
Q ss_pred ChHHHHHHHhCCceEe
Q 016535 369 GISVVEYMAAGAIPIG 384 (388)
Q Consensus 369 ~~~vlEAma~G~PVI~ 384 (388)
-.++.||-..|.||||
T Consensus 169 ~iAv~EA~klgIPVvA 184 (252)
T COG0052 169 KIAVKEANKLGIPVVA 184 (252)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 3689999999999998
No 469
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.32 E-value=3.9e+02 Score=22.33 Aligned_cols=70 Identities=9% Similarity=-0.027 Sum_probs=39.9
Q ss_pred CcEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016535 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (388)
Q Consensus 269 ~~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~ 348 (388)
...+.|+|.-..+-. +.++.-+.++++.+ -.+..+.+|... .-..+.+.+.....++.-+..-..|.++
T Consensus 108 qriVaFvgSpi~ese-deLirlak~lkknn----VAidii~fGE~~------n~~~l~efIda~N~~dsshl~~~~P~p~ 176 (243)
T COG5148 108 QRIVAFVGSPIQESE-DELIRLAKQLKKNN----VAIDIIFFGEAA------NMAGLFEFIDATNFSDSSHLEVKPPNPE 176 (243)
T ss_pred eEEEEEecCcccccH-HHHHHHHHHHHhcC----eeEEEEehhhhh------hhhHHHHHHHhhccccceeeEecCCCHH
Confidence 467888887654433 88888888887764 457777777432 2224455555444444444333323344
Q ss_pred H
Q 016535 349 L 349 (388)
Q Consensus 349 l 349 (388)
+
T Consensus 177 l 177 (243)
T COG5148 177 L 177 (243)
T ss_pred H
Confidence 3
No 470
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=25.21 E-value=4.1e+02 Score=29.00 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 344 v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
-+.+++.++++.+|+++...-..-=..++..|+.+|+++++.
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEEC
Confidence 355888888899999888765532234567788999999875
No 471
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=25.18 E-value=1.3e+02 Score=27.15 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=29.0
Q ss_pred cCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEe
Q 016535 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (388)
Q Consensus 31 ~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~ 74 (388)
+...++|++. ||++-+-..|+..|..+| |+|++.-
T Consensus 24 p~~~lrI~it-------GgaGFIgSHLvdkLm~eg--h~VIa~D 58 (350)
T KOG1429|consen 24 PSQNLRILIT-------GGAGFIGSHLVDKLMTEG--HEVIALD 58 (350)
T ss_pred CCCCcEEEEe-------cCcchHHHHHHHHHHhcC--CeEEEEe
Confidence 4456888887 899999999999999999 7777653
No 472
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.13 E-value=2.3e+02 Score=19.41 Aligned_cols=72 Identities=14% Similarity=-0.010 Sum_probs=35.6
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhc-CCCCcEEEccCCCHHHH--HHHHHhCcEEEEcCCCCCCCh---HHHHHHHhCCc
Q 016535 308 QFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRDL--VKLLGGAVVGIHSMIDEHFGI---SVVEYMAAGAI 381 (388)
Q Consensus 308 ~ivG~~~~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~v~~~~l--~~~~~~adv~v~ps~~E~~~~---~vlEAma~G~P 381 (388)
.++|.|. +......+.....+. +. ++.+......... ......-|+++.-|.....+- .+-++-..|.+
T Consensus 2 ~i~g~G~---s~~~a~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ 76 (87)
T cd04795 2 FVIGIGG---SGAIAAYFALELLELTGI--EVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIP 76 (87)
T ss_pred EEEEcCH---HHHHHHHHHHHHhcccCC--ceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCe
Confidence 4566653 333344555555555 54 3555543221221 234455677776654322222 24455677888
Q ss_pred eEe
Q 016535 382 PIG 384 (388)
Q Consensus 382 VI~ 384 (388)
+|+
T Consensus 77 ii~ 79 (87)
T cd04795 77 VIA 79 (87)
T ss_pred EEE
Confidence 875
No 473
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=25.11 E-value=1.5e+02 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 016535 10 AVITAVLASILILASHVHNA 29 (388)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (388)
..|+.|++.|++++++++|-
T Consensus 23 ~~L~lVl~lI~~~aWLlkR~ 42 (124)
T PRK11486 23 GALIGIIALILAAAWLVKRL 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34566777788888888875
No 474
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=25.05 E-value=5.1e+02 Score=24.91 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHHHHh--------cCC--CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 280 PEKAHPLQLEAFSVALRKL--------DAD--LPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~l~~~~--------~~~--~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
...|.+.+++|+-....+. +.. ...-...+.|.... ....+++++.+++|++.++.+.|. +-+|+
T Consensus 131 ~~~G~d~a~~ai~~~l~~~~~~g~~~~~~~~~~~~~~vnl~G~~~~----gd~~eik~lL~~~Gi~~~~~~~G~-~~~ei 205 (422)
T TIGR02015 131 HAEAKDVLVSAMLKYARREVSAGPVGEPKSGRDSKPTLVLLGEIFP----VDAMVIGGVLQPIGVESGPTVPGR-DWREL 205 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCceeeecCCCc----ccHHHHHHHHHHcCCCeEEecCCC-CHHHH
Confidence 4788888888877643210 000 01236667775432 224589999999999988877665 77887
Q ss_pred HHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEe
Q 016535 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIG 384 (388)
Q Consensus 350 ~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~ 384 (388)
.+.=.+.--+++.++.. ....+...+|+|.+.
T Consensus 206 ~~a~~A~~~i~l~~~~~---~a~~l~~~~GvP~~~ 237 (422)
T TIGR02015 206 YAALDSSAVAVLHPFYE---ATARLFEAAGVKIVG 237 (422)
T ss_pred HhhhcCeEEEEeCccch---HHHHHHHHcCCceec
Confidence 77655544333333322 333233378999764
No 475
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.02 E-value=3.7e+02 Score=21.75 Aligned_cols=44 Identities=16% Similarity=-0.034 Sum_probs=30.7
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 338 V~~~g~v~~~~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+.+.|+-=...+.+..+.||+++.- +-.-+++|.+..|+|-|+.
T Consensus 63 l~id~y~f~psl~e~I~~AdlVIsH----AGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 63 LTIDGYDFSPSLTEDIRSADLVISH----AGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred eEEEEEecCccHHHHHhhccEEEec----CCcchHHHHHHcCCCEEEE
Confidence 3333333347788889999987753 2233799999999998764
No 476
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=24.84 E-value=1.1e+02 Score=16.05 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=8.5
Q ss_pred HHHHHHHHhhccc
Q 016535 19 ILILASHVHNARR 31 (388)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (388)
+=.+.|.+++||.
T Consensus 13 LP~lISWIK~kr~ 25 (26)
T PF01372_consen 13 LPTLISWIKNKRQ 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhc
Confidence 3345788887774
No 477
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=24.75 E-value=1.6e+02 Score=26.95 Aligned_cols=85 Identities=14% Similarity=-0.028 Sum_probs=50.4
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016535 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (388)
Q Consensus 272 il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~ 351 (388)
|-..|-.-....++.+++-+.++.++. |+ +++.|+-|..-..++..++.+.+++.+. .+.=-.+.+.+.+
T Consensus 104 in~~Gp~is~~~~~~~l~~~~~~l~~~-----d~-VvlsGSlP~g~~~d~y~~li~~~~~~g~----~vilD~Sg~~L~~ 173 (310)
T COG1105 104 INFPGPEISEAELEQFLEQLKALLESD-----DI-VVLSGSLPPGVPPDAYAELIRILRQQGA----KVILDTSGEALLA 173 (310)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcccC-----CE-EEEeCCCCCCCCHHHHHHHHHHHHhcCC----eEEEECChHHHHH
Confidence 445555555666677777666654442 44 7777776666666777777777776542 2222344566666
Q ss_pred HHHhCcEEEEcCCCC
Q 016535 352 LLGGAVVGIHSMIDE 366 (388)
Q Consensus 352 ~~~~adv~v~ps~~E 366 (388)
.+..-=-++=|...|
T Consensus 174 ~L~~~P~lIKPN~~E 188 (310)
T COG1105 174 ALEAKPWLIKPNREE 188 (310)
T ss_pred HHccCCcEEecCHHH
Confidence 666665555565433
No 478
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=24.59 E-value=73 Score=14.18 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=7.1
Q ss_pred HHHHHHHhCC
Q 016535 371 SVVEYMAAGA 380 (388)
Q Consensus 371 ~vlEAma~G~ 380 (388)
+++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 4678887775
No 479
>COG1869 RbsD ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]
Probab=24.58 E-value=29 Score=26.89 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 360 (388)
.+|...+++.++.+.+.. .++=+++-..-.+.+.+..+.|....++++-+..+.+ +|+++....-+.+.+++
T Consensus 45 ~~GvPsF~qvl~vv~~em-----~VE~~ilAeEike~np~~~~~L~~~~~~~~~~iei~~---~sHE~fK~~t~~~kavI 116 (135)
T COG1869 45 TAGVPSFLQVLAVVLEEM-----QVEAVILAEEIKEHNPQLHEALLTLLTQLGNQIEIQY---VSHEEFKLLTHESKAVI 116 (135)
T ss_pred ecCCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCceEEe---cCHHHHHHhhccceEEE
Confidence 466777777777765553 3333333332222356677788887777654434444 56689887777777777
Q ss_pred EcCCCCCCChHHHHH
Q 016535 361 HSMIDEHFGISVVEY 375 (388)
Q Consensus 361 ~ps~~E~~~~~vlEA 375 (388)
-+-..-+|..+++.|
T Consensus 117 RtGE~tPyaNvIl~a 131 (135)
T COG1869 117 RTGECTPYANVILVA 131 (135)
T ss_pred EcCCCCccceeeEec
Confidence 665666777777654
No 480
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.48 E-value=1.2e+02 Score=21.41 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=33.0
Q ss_pred EEEEeCCCCCccHHHH-HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCCC
Q 016535 307 LQFVGSCRNKSDEERL-QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (388)
Q Consensus 307 l~ivG~~~~~~~~~~~-~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~~ 365 (388)
++++|.|-. ..... ..+++.++++|++-.+.... . .+.......+|+++.+...
T Consensus 3 lvvC~~Gi~--TS~~~~~~i~~~~~~~gi~~~~~~~~-~--~~~~~~~~~~D~il~~~~i 57 (90)
T PF02302_consen 3 LVVCGSGIG--TSLMVANKIKKALKELGIEVEVSAGS-I--LEVEEIADDADLILLTPQI 57 (90)
T ss_dssp EEEESSSSH--HHHHHHHHHHHHHHHTTECEEEEEEE-T--TTHHHHHTT-SEEEEEESS
T ss_pred EEECCChHH--HHHHHHHHHHHHHHhccCceEEEEec-c--cccccccCCCcEEEEcCcc
Confidence 455555521 22233 78999999999874444334 2 4556677779988876544
No 481
>PRK11797 D-ribose pyranase; Provisional
Probab=24.35 E-value=79 Score=25.07 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCCCHHHHHHHHHhCc
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRL-QFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGGAV 357 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l-~ivG~~~~~~~~~~~~~l~~~~~~~~l--~~~V~~~g~v~~~~l~~~~~~ad 357 (388)
..|...+++.++.+.+.. | +.- ++... ....+.+..+++++..++.+. ...+ =..++++++..+.-++|.
T Consensus 45 ~~g~p~f~~vl~aIL~~~----~-Ve~~~~~~e-~~~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~i~r~~Fy~~a~~a~ 117 (139)
T PRK11797 45 TKGVPSFLDVLDVVLSEM----Q-VEKAILAEE-IKEHNPELHEALLTQLEQLEQHQGNTI-EIEYVSHEEFKQLTAESK 117 (139)
T ss_pred CCCCCCHHHHHHHHHHhc----C-cchHHHhhh-ccccCHHHHHHHHHHHHHhhhccCCCc-ceeEECHHHHHHHHhcce
Confidence 366776666666665554 2 221 12222 112244567777777765321 1112 233577899999999999
Q ss_pred EEEEcCCCCCCChHHH
Q 016535 358 VGIHSMIDEHFGISVV 373 (388)
Q Consensus 358 v~v~ps~~E~~~~~vl 373 (388)
++|.+...-.|+..++
T Consensus 118 avVrTGE~~~YaNiIL 133 (139)
T PRK11797 118 AVIRTGECTPYANIIL 133 (139)
T ss_pred EEEECCCCCCeeEEEE
Confidence 9999988878887664
No 482
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=24.34 E-value=1.2e+02 Score=29.40 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=28.9
Q ss_pred cCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEEec
Q 016535 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (388)
Q Consensus 31 ~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~~~ 75 (388)
+++.|+|++. ||.+-+=.+|++.|.++| ++|+++..
T Consensus 117 ~~~~mkILVT-------GatGFIGs~Lv~~Ll~~G--~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVVT-------GGAGFVGSHLVDKLIGRG--DEVIVIDN 152 (436)
T ss_pred ccCCCEEEEE-------CCccHHHHHHHHHHHHCC--CEEEEEeC
Confidence 3456787777 788888899999999999 78877654
No 483
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.30 E-value=6.2e+02 Score=24.04 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEE
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v 360 (388)
++++..+++++....+... .+ ...++-...-...+...+.+-+-+.+.|....+..+..-+.+|+.+....|+.++
T Consensus 227 ~~~~~~i~~~Y~~W~~~~~---~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~v 302 (388)
T COG0426 227 RGNPKEIVEAYRDWAEGQP---KG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLV 302 (388)
T ss_pred eCCHHHHHHHHHHHHccCC---cc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEE
Confidence 4468999999999977642 23 5666655322223445667777777888887788887778899999999999888
Q ss_pred EcC
Q 016535 361 HSM 363 (388)
Q Consensus 361 ~ps 363 (388)
..|
T Consensus 303 vGs 305 (388)
T COG0426 303 VGS 305 (388)
T ss_pred Eec
Confidence 765
No 484
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=24.30 E-value=2.3e+02 Score=24.49 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=41.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcC--CCCcEEEccCCCHHHHHHHHH
Q 016535 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--VDGNVEFYKNLLYRDLVKLLG 354 (388)
Q Consensus 277 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~--l~~~V~~~g~v~~~~l~~~~~ 354 (388)
-++|.|-... +.++++... .....+++|+...- + +..++..+.+++.. ++ -+.|.|.. +. .-.
T Consensus 5 ~iDP~K~~~~--~~~~~~~~~-----~gtdai~vGGS~~v-~-~~~~~~~~~ik~~~~~~P-vilfp~~~--~~---i~~ 69 (219)
T cd02812 5 KLDPDKELVD--EEIAKLAEE-----SGTDAIMVGGSDGV-S-STLDNVVRLIKRIRRPVP-VILFPSNP--EA---VSP 69 (219)
T ss_pred eeCCCCCCCH--HHHHHHHHh-----cCCCEEEECCccch-h-hhHHHHHHHHHHhcCCCC-EEEeCCCc--cc---cCc
Confidence 3567775222 223444333 25677888876322 1 23334444444443 44 56777776 33 356
Q ss_pred hCcEEEEcCCCC
Q 016535 355 GAVVGIHSMIDE 366 (388)
Q Consensus 355 ~adv~v~ps~~E 366 (388)
.+|++++||...
T Consensus 70 ~aDa~l~~svln 81 (219)
T cd02812 70 GADAYLFPSVLN 81 (219)
T ss_pred CCCEEEEEeeec
Confidence 799999998543
No 485
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.22 E-value=4.6e+02 Score=22.46 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 016535 286 LQLEAFSVALRKLDADLPRPRLQFVGS 312 (388)
Q Consensus 286 ~ll~a~~~l~~~~~~~~~~~~l~ivG~ 312 (388)
.+++.+.+..++. ++.+.+...
T Consensus 16 ~~~~~i~~~~~~~-----g~~~~~~~~ 37 (266)
T cd06278 16 ELLEALSRALQAR-----GYQPLLINT 37 (266)
T ss_pred HHHHHHHHHHHHC-----CCeEEEEcC
Confidence 3444444444442 455555543
No 486
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=24.22 E-value=2.6e+02 Score=26.72 Aligned_cols=32 Identities=31% Similarity=0.063 Sum_probs=25.1
Q ss_pred HHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 353 ~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+..+|+|+-.|....|.--+++.|+.. |+|-.
T Consensus 267 ~~~adv~iG~S~~G~~t~e~V~~Ma~~-PiIfa 298 (432)
T COG0281 267 LAGADVLIGVSGVGAFTEEMVKEMAKH-PIIFA 298 (432)
T ss_pred ccCCCEEEEcCCCCCcCHHHHHHhccC-CEEee
Confidence 456899999998866777799999888 77643
No 487
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=24.20 E-value=1.5e+02 Score=24.71 Aligned_cols=44 Identities=11% Similarity=-0.030 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHH
Q 016535 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI 330 (388)
Q Consensus 281 ~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~ 330 (388)
.-+...+.+.+++|.+- |++..+++|.|.+- -.+..+.++++++
T Consensus 154 ~~d~~~a~~sl~RLa~~-----~~fe~lLvGdGwpi-~~~~r~rl~~L~~ 197 (199)
T PF14597_consen 154 LYDPTEARASLRRLAAY-----PDFEWLLVGDGWPI-FRDARQRLRELVA 197 (199)
T ss_dssp -S-HHHHHHHHHHHHT------TT--EEEESBB--B--S-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcc-----ccccEEeecCCchh-hhhHHHHHHHHHh
Confidence 34567788888888776 79999999998654 1233456666554
No 488
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.19 E-value=2.6e+02 Score=22.41 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=40.0
Q ss_pred cccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCC---cEEEccCCCHHHHHHH
Q 016535 276 AQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG---NVEFYKNLLYRDLVKL 352 (388)
Q Consensus 276 grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~---~V~~~g~v~~~~l~~~ 352 (388)
.+......-....+.+..+..++ +.+++.+|+ ...+.....+.+++.++++...+ .|.+ -.+ +++++.+
T Consensus 40 ~~~~~~~~~~~~~~~l~~~i~~~-----kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V-~~v-~~~~A~l 111 (150)
T PF14639_consen 40 YNERDRERKEEDMERLKKFIEKH-----KPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPV-VIV-DDEVARL 111 (150)
T ss_dssp S-TT-SS-SHHHHHHHHHHHHHH-------SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--E-EE----TTHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHc-----CCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceE-EEE-CcHHHHH
Confidence 33344455567777778887776 556666654 33335556677888887765221 1221 111 4789999
Q ss_pred HHhCcE
Q 016535 353 LGGAVV 358 (388)
Q Consensus 353 ~~~adv 358 (388)
|+++..
T Consensus 112 Y~~S~r 117 (150)
T PF14639_consen 112 YSNSKR 117 (150)
T ss_dssp HHTSHH
T ss_pred HhcCHH
Confidence 999874
No 489
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=24.09 E-value=2.9e+02 Score=24.62 Aligned_cols=21 Identities=38% Similarity=0.295 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEE
Q 016535 283 AHPLQLEAFSVALRKLDADLPRPRL 307 (388)
Q Consensus 283 g~~~ll~a~~~l~~~~~~~~~~~~l 307 (388)
++...++|+++++++. ||+-+
T Consensus 71 ~vpGt~~af~kIkekR----pDIl~ 91 (275)
T PF12683_consen 71 AVPGTAEAFRKIKEKR----PDILL 91 (275)
T ss_dssp SS---HHHHHHHHHH-----TTSEE
T ss_pred CCcchHHHHHHHHhcC----CCeEE
Confidence 3466677777776664 56544
No 490
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.08 E-value=2.4e+02 Score=25.41 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=18.4
Q ss_pred CChhhHHHHHHHHHhhcCCCceEEEEec
Q 016535 48 GGGERVLWCAVKAIQEESPDLDCIVYTG 75 (388)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~v~~~ 75 (388)
||-.|. ..+++.|.++| ++|.++--
T Consensus 8 ggd~r~-~~~~~~l~~~g--~~v~~~g~ 32 (287)
T TIGR02853 8 GGDARQ-LELIRKLEELD--AKISLIGF 32 (287)
T ss_pred cccHHH-HHHHHHHHHCC--CEEEEEec
Confidence 455554 45999999999 77777754
No 491
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.07 E-value=3.7e+02 Score=24.55 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCc-EEEccCCCHHHHHHHHHhC
Q 016535 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN-VEFYKNLLYRDLVKLLGGA 356 (388)
Q Consensus 287 ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~-V~~~g~v~~~~l~~~~~~a 356 (388)
+-+.++.++++.. .|.+..+.+|+ +..+..|.+.-.+.+++.|+.-. +++....+.+++.+.+...
T Consensus 20 lk~~i~~l~~~g~--~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 20 VREDVRTLKAAGI--EPALAVILVGN--DPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAEL 86 (301)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455544321 26566666664 33466789999999999999643 4555667888888887664
No 492
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=24.06 E-value=3.9e+02 Score=25.35 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEccCCC-----H----H---HHHHHH--HhCcEEEEcCCCCCCChHHHHHHHh--CCc
Q 016535 318 DEERLQSLKDKSIELKVDGNVEFYKNLL-----Y----R---DLVKLL--GGAVVGIHSMIDEHFGISVVEYMAA--GAI 381 (388)
Q Consensus 318 ~~~~~~~l~~~~~~~~l~~~V~~~g~v~-----~----~---~l~~~~--~~adv~v~ps~~E~~~~~vlEAma~--G~P 381 (388)
.....+.+++.+++.|+. |.+...++ . . .+.+.+ ..+|+++..+..+.....+-||-.. +.+
T Consensus 185 G~~~~~~f~~~~~~~Gic--Ia~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~ 262 (403)
T cd06361 185 GRSALETFIIQAEANGVC--IAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNINKV 262 (403)
T ss_pred HHHHHHHHHHHHHHCCeE--EEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCCCeE
Confidence 445677888888888764 32221111 1 1 122223 4588888877665555555555444 446
Q ss_pred eEeeC
Q 016535 382 PIGKH 386 (388)
Q Consensus 382 VI~~~ 386 (388)
.|+++
T Consensus 263 wigs~ 267 (403)
T cd06361 263 WIASD 267 (403)
T ss_pred EEEEC
Confidence 66665
No 493
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=24.03 E-value=1.5e+02 Score=27.36 Aligned_cols=38 Identities=24% Similarity=-0.008 Sum_probs=24.8
Q ss_pred HHHHHHHhCcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 348 ~l~~~~~~adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+..++....|+.+.++-...-.-.+.+++++|+.||++
T Consensus 53 d~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 53 DDEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDS 90 (324)
T ss_pred CHHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEEC
Confidence 34445688998877543222123456889999999987
No 494
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=23.95 E-value=2.4e+02 Score=21.42 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016535 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (388)
Q Consensus 303 ~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v 344 (388)
-++++.++|+-+.. ...+.|++.+.+..-..++.|....
T Consensus 68 Y~iklAivGD~s~~---~~S~~l~dfi~EsN~G~~~~F~~~~ 106 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY---ATSKSLRDFIYESNRGNHFFFVPDE 106 (113)
T ss_pred hceeEEEEEccccc---ccchhHHHHHHHhcCCCeEEEECCH
Confidence 38999999986332 1356888888887777788888765
No 495
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.94 E-value=3.7e+02 Score=24.03 Aligned_cols=15 Identities=7% Similarity=-0.223 Sum_probs=8.0
Q ss_pred HHHHHHhCCceEeeC
Q 016535 372 VVEYMAAGAIPIGKH 386 (388)
Q Consensus 372 vlEAma~G~PVI~~~ 386 (388)
+-++...|.|||+.|
T Consensus 75 ~~~~~~~giPvV~~~ 89 (303)
T cd01539 75 INKAKQKNIPVIFFN 89 (303)
T ss_pred HHHHHHCCCCEEEeC
Confidence 344455566666543
No 496
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.93 E-value=2.2e+02 Score=26.38 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHh--CcEEEEcCCCCCCChHHHHHHHhCCceEee
Q 016535 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIGK 385 (388)
Q Consensus 323 ~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~--adv~v~ps~~E~~~~~vlEAma~G~PVI~~ 385 (388)
+.-++.+++++++ +.+.+|.. +++ .+. +|+...++..-.=--++.-++..|++|++-
T Consensus 44 ~~A~~fAq~~~~~-~~k~y~sy--EeL---akd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~E 102 (351)
T KOG2741|consen 44 ERAKEFAQRHNIP-NPKAYGSY--EEL---AKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCE 102 (351)
T ss_pred HHHHHHHHhcCCC-CCccccCH--HHH---hcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEec
Confidence 4678889999997 77888764 554 444 477776654433233567788889988763
No 497
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.81 E-value=6.5e+02 Score=24.13 Aligned_cols=101 Identities=12% Similarity=-0.012 Sum_probs=57.7
Q ss_pred cEEEEEcccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016535 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (388)
Q Consensus 270 ~~il~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l 349 (388)
.+-+-.+..+.-.-..-+|+ ++++++ |++++++.-.++... +...+.++-...+.+++.=-..-+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~---~l~~~~----P~~~ilvTt~T~Tg~--------e~a~~~~~~~v~h~YlP~D~~~~v 115 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVR---ALRERF----PDLRILVTTMTPTGA--------ERAAALFGDSVIHQYLPLDLPIAV 115 (419)
T ss_pred eEEEEecchhHHHHHHHHHH---HHHHhC----CCCCEEEEecCccHH--------HHHHHHcCCCeEEEecCcCchHHH
Confidence 44555555555444444444 444554 899998887554322 222233332223444444223333
Q ss_pred HHHHHh--CcEEEEcCCCCCCChHHHHHHHhCCceEeeC
Q 016535 350 VKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIGKH 386 (388)
Q Consensus 350 ~~~~~~--adv~v~ps~~E~~~~~vlEAma~G~PVI~~~ 386 (388)
...+.. -|+.|. ...|-+|+.+.|+-..|+|.+--|
T Consensus 116 ~rFl~~~~P~l~Ii-~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 116 RRFLRKWRPKLLII-METELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred HHHHHhcCCCEEEE-EeccccHHHHHHHHHcCCCEEEEe
Confidence 444433 444443 367889999999999999998765
No 498
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.80 E-value=4.3e+02 Score=25.87 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHH-HHHHh-cCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCc
Q 016535 280 PEKAHPLQLEAFSV-ALRKL-DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (388)
Q Consensus 280 ~~Kg~~~ll~a~~~-l~~~~-~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~ad 357 (388)
...|.+...+++-. +.... +....+-.+.++|......| .++++++.++.|+..+..|.|.-+-+++.. +.+|.
T Consensus 165 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd---~~elk~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~ 240 (475)
T PRK14478 165 KNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGE---LWQVKPLLDRLGIRVVACITGDARYDDVAS-AHRAR 240 (475)
T ss_pred hhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCC---HHHHHHHHHHcCCeEEEEcCCCCCHHHHHh-cccCc
Confidence 45788887776654 43221 11113457888886543322 357889999999987777888777788887 56666
Q ss_pred EEEEcCCCCCCChHHHHHH--HhCCceEe
Q 016535 358 VGIHSMIDEHFGISVVEYM--AAGAIPIG 384 (388)
Q Consensus 358 v~v~ps~~E~~~~~vlEAm--a~G~PVI~ 384 (388)
+-|..+. ..+....|+| .+|+|.+.
T Consensus 241 lniv~~~--~~~~~~A~~L~erfGiP~~~ 267 (475)
T PRK14478 241 ANMMVCS--GAMINLARKMEERYGIPFFE 267 (475)
T ss_pred EEEEEcH--HHHHHHHHHHHHHhCCCEEe
Confidence 4443321 1223344444 35777654
No 499
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.74 E-value=2.3e+02 Score=23.97 Aligned_cols=71 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHHhCcEEEEcCC
Q 016535 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (388)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~l~~~~~~~~l~~~V~~~g~v~~~~l~~~~~~adv~v~ps~ 364 (388)
+.+.+-++...++. |+-+.+-++| +.+...+..+.+++.|.+ +.-+...+...+.++...+|+.+.-..
T Consensus 97 ~~f~~ql~~~~~~g-----Dvli~iS~SG----~s~~v~~a~~~Ak~~G~~--vI~IT~~~~s~l~~l~~~~D~~i~ip~ 165 (196)
T PRK10886 97 EVYAKQVRALGHAG-----DVLLAISTRG----NSRDIVKAVEAAVTRDMT--IVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_pred HHHHHHHHHcCCCC-----CEEEEEeCCC----CCHHHHHHHHHHHHCCCE--EEEEeCCCCChhhhccccCCEEEEcCC
Q ss_pred CC
Q 016535 365 DE 366 (388)
Q Consensus 365 ~E 366 (388)
.+
T Consensus 166 ~~ 167 (196)
T PRK10886 166 HR 167 (196)
T ss_pred Cc
No 500
>PTZ00367 squalene epoxidase; Provisional
Probab=23.65 E-value=2e+02 Score=28.91 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH---HHHHhh--cccCccceEEEeccccCCCCChhhHHHHHHHHHhhcCCCceEEEE
Q 016535 12 ITAVLASILIL---ASHVHN--ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (388)
Q Consensus 12 ~~~~~~~~~~~---~~~~~~--~~~~~~~~I~~~~p~~~~gGG~~~~~~~l~~~L~~~g~~~~v~v~ 73 (388)
+|.|.+.++++ .+-+|+ .|.|+..+|+++ |++-.=.-+|.+|.+.| ++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dViIV--------GaGiaGlalA~aLar~G--~~V~Vl 62 (567)
T PTZ00367 6 VLCVVSTLLLLNRILSRLRFKPARTNYDYDVIIV--------GGSIAGPVLAKALSKQG--RKVLML 62 (567)
T ss_pred eHHHHHHHHHHHHHHHHHccCccccccCccEEEE--------CCCHHHHHHHHHHHhcC--CEEEEE
Done!