RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016536
(387 letters)
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 568 bits (1466), Expect = 0.0
Identities = 213/330 (64%), Positives = 252/330 (76%), Gaps = 1/330 (0%)
Query: 59 SAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVH 118
+ VP L + + + ++ + KQ F AMYSS+ GGITTDPAAMVIP+DDHMVH
Sbjct: 6 PGSRTKVPPLLSAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVH 65
Query: 119 RGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKG 178
RGHGVFDTA I DG+LYELD HLDR +RSA+ AKI LPFDR +LRRIL+QTV+AS CR G
Sbjct: 66 RGHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNG 125
Query: 179 SLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV-SKGVKVITSSIPIKPPQFGTVK 237
SLRYWLSAG G F LSP GC + FY +VI+D +GVKV+TSS+PIKPPQF TVK
Sbjct: 126 SLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVK 185
Query: 238 SVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGC 297
SVNYLPN LS+MEAEE GAFA IWLD EGF+AEGPNMNVAF+T + L++P FDKILSGC
Sbjct: 186 SVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGC 245
Query: 298 TAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNG 357
TA+RVL LA LV G L G+K ++VEE K A+EM+L+GSGV V P+V WD Q IG+G
Sbjct: 246 TARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDG 305
Query: 358 KEGPIAQALLDLILEDMQSGPPTVRVAVPY 387
K GPI AL DL+L+DM+SGPP VR VPY
Sbjct: 306 KVGPITLALHDLLLDDMRSGPPGVRTPVPY 335
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 207 bits (529), Expect = 5e-65
Identities = 95/264 (35%), Positives = 138/264 (52%), Gaps = 15/264 (5%)
Query: 114 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 173
D +H G GVF+ G L+ LD+HLDR+ RSA + +P+DR+ LR L + V+A+
Sbjct: 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN 60
Query: 174 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ--DDSPFVSKGVKVITSSIPIKPP 231
N +R L+ GVG ++P + TF V + KGV++ITS +
Sbjct: 61 NGASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAA 120
Query: 232 QFGT--VKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQ 289
GT K+ L +VL+K EA E GA A+ LD G++ EG NV V L+ P
Sbjct: 121 PGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVTEGSASNVFIVKDGELVT-PP 179
Query: 290 FD-KILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPV 346
D IL G T V+ LAK L GIKV ++++E A+E+ L G+ V PV
Sbjct: 180 LDGGILPGITRDSVIELAKEL-------GIKVEERPISLDELYAADEVFLTGTAAEVTPV 232
Query: 347 VQWDEQVIGNGKEGPIAQALLDLI 370
+ D + IG+GK GP+ + L +L+
Sbjct: 233 TEIDGRGIGDGKPGPVTRKLRELL 256
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 199 bits (509), Expect = 3e-62
Identities = 88/260 (33%), Positives = 134/260 (51%), Gaps = 14/260 (5%)
Query: 114 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLP-FDRKSLRRILIQTVSA 172
D G GVF+T DG L+ LD HL R+ RSA ++ +P D LR L ++A
Sbjct: 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSA--RRLGIPEPDLPRLRAALESLLAA 58
Query: 173 SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPI-KPP 231
++ +G +R LS G G +P C YV VI + GV++IT + + + P
Sbjct: 59 NDIDEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQP 118
Query: 232 QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD 291
+K +NYL NVL+K EA + GA A++LD +G + EG N+ FV L+ P D
Sbjct: 119 LLAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGTASNLFFVKDGELVT-PSLD 177
Query: 292 K-ILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWD 350
+ L+G T +RV+ LA A K + + + +E+ A+E L S + V PV D
Sbjct: 178 RGGLAGITRQRVIELAAA-----KGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAID 232
Query: 351 EQVIGNGKEGPIAQALLDLI 370
+ +G GP+ +AL +L+
Sbjct: 233 D---HDGPPGPLTRALRELL 249
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 174 bits (444), Expect = 3e-52
Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 16/266 (6%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
+ + D G GV++ + +G + LD+HLDR+ RSA +I +P+ R+ L+ ++ +
Sbjct: 14 VSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIPYTREELKELIREL 73
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ---DDSPFVSKGVKVITSS- 225
V+ + +G + ++ GVG C + T +I + + KGV+VIT
Sbjct: 74 VAKNEGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVPD 133
Query: 226 IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLL 285
I +KS+N L NVL+K EA+E GA AI LD +G + EG + NV V L+
Sbjct: 134 IRWLRCD---IKSLNLLNNVLAKQEAKEAGADEAILLDADGLVTEGSSSNVFIVKNGVLV 190
Query: 286 LMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLV 343
P + IL G T V+ LAK GI V ++EE A+E+ L + V
Sbjct: 191 TPPLDNGILPGITRATVIELAKE-------LGIPVEERPFSLEELYTADEVFLTSTTAEV 243
Query: 344 RPVVQWDEQVIGNGKEGPIAQALLDL 369
PVV+ D + IG+GK GP+ + L +
Sbjct: 244 MPVVEIDGRPIGDGKPGPVTKRLREA 269
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 145 bits (367), Expect = 8e-41
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
+ + D +H G GVF+T +G L+ LD+HL R+ RSA + P + + ++
Sbjct: 18 LSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLL 77
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ----DDSPFVSKGVKVITSS 225
++ +N G L G G L + T V + KGV ++ SS
Sbjct: 78 LAKNNLVPGLYIRPLVRGGGGG-LGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISS 136
Query: 226 IPIKPPQ--FGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 283
+ P K+ NYL +VL+K EA+ GA A+ LD +G++ EG NV FV +
Sbjct: 137 PVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVKGDG 196
Query: 284 LLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSG 340
+L+ P IL G T +L LAK L G+ V +T+E+ K+A+E+ L +
Sbjct: 197 VLVTPPLSGGILPGITRDSLLELAKEL-------GLTVEERPITLEDLKQADEVFLTNTA 249
Query: 341 VLVRPVVQWDEQVIGNGKEGPIAQALLDLILE 372
V PV D +V G+ GP+ + L +L+ +
Sbjct: 250 AGVTPVGLIDGRV---GQPGPVTKKLRELLTD 278
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 136 bits (343), Expect = 6e-38
Identities = 77/239 (32%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 137 LDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRK-GSLRYWLSAGVGDFQLSP 195
LD+HL+R+ RSA I LP + LR+I+ + + A+ G LR +S G G LSP
Sbjct: 3 LDEHLERLRRSAKAL-IGLPLSIEDLRKIIQELLEANGPAGSGRLRILVSRGDGGRGLSP 61
Query: 196 VGCHQSTFYVIVIQDDSPFVS--KGVKVITSSIPIKPPQFGTVKSVNYLPNVL-SKMEAE 252
++ S VK+ SS P+ P K+ NYL NVL + AE
Sbjct: 62 PEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRP-LAGHKTTNYLDNVLAALRAAE 120
Query: 253 ETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK-ILSGCTAKRVLTLAKALVR 311
G A+ LD +G + EG N+ V L P + IL G T + +L LAK L
Sbjct: 121 RAGFDDALLLDEDGNVTEGSTSNIFIVKGGTLYT-PPLESGILPGITRQALLDLAKELGI 179
Query: 312 EGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLI 370
E ++ +T+ + ++A+E L S V PV D ++ GN GPI L +L+
Sbjct: 180 E-----VEERPLTLADLQEADEAFLTNSLRGVTPVTSIDGRIFGN--PGPITAKLRELL 231
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 135 bits (341), Expect = 6e-37
Identities = 89/272 (32%), Positives = 132/272 (48%), Gaps = 25/272 (9%)
Query: 110 IPMDDHMVH---RGH----GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSL 162
+ + VH RG G+++ A+ DG L +LD+HL R+ RS +I P R L
Sbjct: 12 VNHREARVHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAPPMTRAEL 71
Query: 163 RRILIQTVSASNCRKGSLRYWLSAGVG--DFQLSPVGCHQSTFYVIVIQD---DSPFVSK 217
+L + + + R+G + ++ GV D S D +
Sbjct: 72 VEVLRELIRRNRVREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAET 131
Query: 218 GVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVA 277
G+KVIT +P + +KSV LPNVL+K A+E GA A +D +GF+ EG + N
Sbjct: 132 GIKVIT--VPDNRWKRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVD-DGFVTEGASSNAW 188
Query: 278 FVTKE-RLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVEEGKKAEEM 334
VTK+ +L+ P + IL G T ++ LAK L G++V T++E A E
Sbjct: 189 IVTKDGKLVTRPADNFILPGITRHTLIDLAKEL-------GLEVEERPFTLQEAYAAREA 241
Query: 335 ILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 366
+ + V PVVQ D + IGNGK GPIA+ L
Sbjct: 242 FITAASSFVFPVVQIDGKQIGNGKPGPIAKRL 273
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 132 bits (335), Expect = 6e-36
Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 18/263 (6%)
Query: 114 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 173
DH G GVF+ +G ++ L +H+DR+ SA +++P ++ + I+++T+ +
Sbjct: 23 DHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN 82
Query: 174 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDD-----SPFVSKGVKVITSSIPI 228
N R +R +S GVGD L P C + T V+ I + KG+KVIT S
Sbjct: 83 NLRDAYIRLVVSRGVGDLGLDPRKCPKPT--VVCIAEPIGLYPGELYEKGLKVITVSTRR 140
Query: 229 KPPQF--GTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLL 286
P VKS+NYL N+L+K+EA G AI L+ EG++AEG N+ V +L+
Sbjct: 141 NRPDALSPQVKSLNYLNNILAKIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLIT 200
Query: 287 MPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVR 344
P + L G T V+ +AK L GI V T+ + A+E+ L G+ V
Sbjct: 201 PPTYAGALEGITRNAVIEIAKEL-------GIPVREELFTLHDLYTADEVFLTGTAAEVI 253
Query: 345 PVVQWDEQVIGNGKEGPIAQALL 367
PVV+ D +VIG+GK GPI + LL
Sbjct: 254 PVVKVDGRVIGDGKPGPITKKLL 276
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 122 bits (309), Expect = 3e-32
Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 22/269 (8%)
Query: 114 DHMVHRGHGVFDTAAICDG----YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
H +H G GVF+ D ++ L +H+ R+ SA + ++++P+ ++ L +T
Sbjct: 18 THALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRET 77
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ----DDSPFVSKGVKVITSS 225
+ +N R +R + G GD L+P ++ + + KG+ SS
Sbjct: 78 LRKNNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSS 137
Query: 226 IPIKPPQF--GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKE 282
P K+ NYL ++L+K EA G AI LD EG++AEG N+ F+ K+
Sbjct: 138 WRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENI-FIVKD 196
Query: 283 RLLLMPQF-DKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGS 339
+L P IL G T V+TLAK L GI+V ++ EE A+E G+
Sbjct: 197 GVLFTPPVTSSILPGITRDTVITLAKEL-------GIEVVEQPISREELYTADEAFFTGT 249
Query: 340 GVLVRPVVQWDEQVIGNGKEGPIAQALLD 368
+ P+ + D + IGNG+ GP+ + L +
Sbjct: 250 AAEITPIREVDGRKIGNGRRGPVTKKLQE 278
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 121 bits (307), Expect = 4e-32
Identities = 81/293 (27%), Positives = 123/293 (41%), Gaps = 40/293 (13%)
Query: 110 IPMDDHMVHRGHGVFD-----TAAICDGYLYELDQHLDRIIRSASMAKIQLP-FDRKSLR 163
+ H +H G VF+ L+ D++ +R+ RSA ++ LP F +
Sbjct: 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSA--RRLGLPPFSVEEFI 59
Query: 164 RILIQTVSASNC-----RKGSL--R--YWLSAGVGDFQLSPVGCHQSTFYVIVIQ--DDS 212
+ + V SL R + D QL + F V
Sbjct: 60 DAIKELVKLDADWVPYGGGASLYIRPFIF----GTDPQLGVSPALEYLFAVFASPVGAYF 115
Query: 213 PFVSKGVKVITSSIPIKPPQFGTVK---SVNYLPNVLSKMEAEETGAFAAIWLDGE-GFI 268
KGV + SS + G NY ++L++ EA E G A+WLDG G++
Sbjct: 116 KGGEKGVSALVSS-FRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAHGYV 174
Query: 269 AEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVE 326
AE MN+ FV L+ P IL G T +L LA+ L GIKV +T +
Sbjct: 175 AEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDL-------GIKVEERPITRD 227
Query: 327 EGKKAEEMILLGSGVLVRPV--VQWDEQVIGNGKEGPIAQALLDLILEDMQSG 377
E +A+E+ G+ +V PV + + + G G+ GP+ + L DL L D+Q G
Sbjct: 228 ELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDL-LTDIQYG 279
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 109 bits (273), Expect = 3e-27
Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 23/292 (7%)
Query: 86 SKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRII 145
Q++ M G + V+ + DH G GVF+ G ++ L +H+ R+
Sbjct: 1 MGNQYIYM-----NGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLY 55
Query: 146 RSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYV 205
SA + +P + ++QT+ + +R +S G GD L P C + + V
Sbjct: 56 ESAKSILLTIPLTVDEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPS--V 113
Query: 206 IVIQDD-----SPFVSKGVKVITSSIPIKPPQF--GTVKSVNYLPNVLSKMEAEETGAFA 258
I+I + F G+ V++ + P +KS+NYL NVL K+EA + G
Sbjct: 114 IIIAEQLKLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLE 173
Query: 259 AIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGI 318
A+ L+ +G++ EG NV V ++L P + L G T V+ L + L I
Sbjct: 174 ALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERL-------SI 226
Query: 319 KVGN--VTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLD 368
T + A+E+ L G+ + PVV+ D + IG+GK G + + L +
Sbjct: 227 PCEERPFTRHDVYVADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTE 278
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 105 bits (266), Expect = 5e-26
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 51/280 (18%)
Query: 115 HMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 168
H +H G GVF DT ++ L +H R+ SA + ++++P+ L +
Sbjct: 28 HALHYGTGVFEGIRAYDTPK--GPAIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQRE 85
Query: 169 TVSASNCRKGSLR--YWLSAGVGDFQLSPVGCHQSTFYVIV--------IQDDSPFVSKG 218
V +N + +R ++ + P G V + + +++ + KG
Sbjct: 86 VVRKNNLKSAYIRPLVFVGDEG--LGVRPHGL---PTDVAIAAWPWGAYLGEEA--LEKG 138
Query: 219 VKVITSS--------IPIKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIA 269
++V SS IP + K+ NYL ++L+K EA G A+ LD EG+++
Sbjct: 139 IRVKVSSWTRHAPNSIPTR------AKASGNYLNSILAKTEARRNGYDEALLLDVEGYVS 192
Query: 270 EGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVE 326
EG N+ F+ ++ +L P IL G T V+TLAK L GI+V +T +
Sbjct: 193 EGSGENI-FIVRDGVLYTPPLTSSILEGITRDTVITLAKDL-------GIEVIERRITRD 244
Query: 327 EGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 366
E A+E+ G+ V P+ + D + IGNGK GPI + L
Sbjct: 245 ELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKL 284
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 102 bits (256), Expect = 6e-25
Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 23/256 (8%)
Query: 120 GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGS 179
G GV++ + +G L+ +++H+DR+ SA+ +I +P+ ++ L ++L + V +N G
Sbjct: 26 GDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKNNLNTGH 85
Query: 180 LRYWLSAGV-------GDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQ 232
+ + ++ GV + PV T Y + + KGVK IT I+ +
Sbjct: 86 VYFQVTRGVAPRNHQFPAGTVKPV----ITAYTKEVPRPEENLEKGVKAITVE-DIRWLR 140
Query: 233 FGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK 292
+KS+N L NVL+K EA E GA+ AI G G + EG + NV + L P +
Sbjct: 141 C-DIKSLNLLGNVLAKQEAHEKGAYEAILHRG-GTVTEGSSSNVYGIKDGVLYTHPANNL 198
Query: 293 ILSGCTAKRVLTLAKALVREGKLHGIKVGN--VTVEEGKKAEEMILLGSGVLVRPVVQWD 350
IL+G T +L A+ +GI V T EE A+E+ + + + PV++ D
Sbjct: 199 ILNGITRMVILACAEE-------NGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEID 251
Query: 351 EQVIGNGKEGPIAQAL 366
Q IG+GK GP + L
Sbjct: 252 GQQIGDGKPGPWTRQL 267
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 82.7 bits (205), Expect = 7e-18
Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 45/273 (16%)
Query: 114 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 173
DH G GVF+T I +G+ + LD H DR+ + +I+ + + IL + +
Sbjct: 20 DHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKN 79
Query: 174 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQF 233
+R+ +SAG+G+ L + T VIV ++ P+ PP
Sbjct: 80 GLENAYVRFNVSAGIGEIGLQTEMYEEPT--VIV------YMK----------PLAPPGL 121
Query: 234 -----GTV--------------KSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNM 274
G V KS +YL N+L K E I+L EG++AEG
Sbjct: 122 PAEKEGVVLKQRRNTPEGAFRLKSHHYLNNILGKREIGNDPNKEGIFLTEEGYVAEGIVS 181
Query: 275 NVAFVTKERLLLMPQFDK-ILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEE 333
N+ +V K ++ P + IL+G T V+ + + L E +K G T EE A+E
Sbjct: 182 NLFWV-KGDIVYTPSLETGILNGITRAFVIKVLEELGIE-----VKEGFYTKEELLSADE 235
Query: 334 MILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 366
+ + S + P+ + +E+ GK G + + L
Sbjct: 236 VFVTNSIQEIVPLTRIEERDFP-GKVGMVTKRL 267
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 81.5 bits (202), Expect = 2e-17
Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 41/267 (15%)
Query: 104 DPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLR 163
DP+A ++ DD RG GVF+T + DG L+ HL+R+ RSA++ + P D R
Sbjct: 22 DPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPEP-DLDRWR 80
Query: 164 RILIQTVSA---SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSK--- 217
R ++ + + +LR S G G T +V V SP +
Sbjct: 81 R-AVELAIEEWRAPEDEAALRLVYSRGR-----ESGG--APTAWVTV----SPVPERVAR 128
Query: 218 ----GVKVITSSI--PIK-----PPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEG 266
GV VIT P P K+++Y N+ + A GA I+ +G
Sbjct: 129 ARREGVSVITLDRGYPSDAAERAPWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDG 188
Query: 267 FIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKAL---VREGKLHGIKVGNV 323
++ EGP V T +RLL P + IL G T + +A+ L
Sbjct: 189 YVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRAL-------- 240
Query: 324 TVEEGKKAEEMILLGSGVLVRPVVQWD 350
+ A+ + L+ S L V D
Sbjct: 241 RPADLFAADGVWLVSSVRLAARVHTLD 267
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 80.1 bits (197), Expect = 6e-17
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 29/278 (10%)
Query: 101 ITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRK 160
I T I +++ + G GV++ + G + LD H+ R+ RS ++ LPF +
Sbjct: 14 IDTTKQKTYIELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKA 73
Query: 161 SLRRILIQTVSASNCRK-GSLRYWLSAGVG------DFQLSPVGCHQSTFYVIVIQDDSP 213
L +L + + +N + G++ +S GV + + P T Y + + + P
Sbjct: 74 ELITLLYKLIENNNFHEDGTIYLQVSRGVQARTHTFSYDVPP------TIYAYITKKERP 127
Query: 214 --FVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEG 271
++ GV+ I+ P +KS+N LPN+L+ +AE G A+++ G + EG
Sbjct: 128 ALWIEYGVRAISE--PDTRWLRCDIKSLNLLPNILAATKAERKGCKEALFVR-NGTVTEG 184
Query: 272 PNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKAL---VREGKLHGIKVGNVTVEEG 328
+ N + L P IL+G + VL+LAK L V+E +V +
Sbjct: 185 SHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELF--------SVRDV 236
Query: 329 KKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 366
+A+E G+ + + P+ D I +G+ GPI + L
Sbjct: 237 YQADECFFTGTTIEILPMTHLDGTAIQDGQVGPITKML 274
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 74.9 bits (185), Expect = 2e-15
Identities = 72/255 (28%), Positives = 111/255 (43%), Gaps = 26/255 (10%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
I + D + G G F TA + +G + LD HL+R+ +A+ I LP D +LR + Q
Sbjct: 10 ISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPLP-DWDALREEMAQ- 67
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP-----FVSKGVKVITS 224
A+ G L+ +S G G SP GC T I+ P + +G+++ S
Sbjct: 68 -LAAGYSLGVLKVIISRGSGGRGYSPPGCSDPT--RIISVSPYPAHYSAWQQQGIRLGVS 124
Query: 225 SIPI-KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 283
+ + + P +K +N L VL K E E + A A+ LD +G + E N+ + +
Sbjct: 125 PVRLGRNPLLAGIKHLNRLEQVLIKAELENSEADEALVLDTDGNVVECTAANIFWRKGNQ 184
Query: 284 LLLMPQFDKILSGCTAK-----RVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLG 338
+ F LS C VL L AL E I+ +EE A+E+ +
Sbjct: 185 V-----FTPDLSYCGVAGVMRQHVLALLPALGYE-----IEEVKAGLEELLSADEVFITN 234
Query: 339 SGVLVRPVVQWDEQV 353
S + V PV E
Sbjct: 235 SLMGVVPVNAIGETS 249
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 61.7 bits (150), Expect = 1e-10
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 240 NYLPNVLSKMEAEETGAFAAIWLD--GEGFIAEGPNMNVAFVTKE-RLLLMPQFDKILSG 296
NY ++L++ +A E G ++LD +I E MN F+T + L+ P IL G
Sbjct: 159 NYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPG 218
Query: 297 CTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKA----EEMILLGSGVLVRPVVQW- 349
T +L LAK L G++V + ++E K EE+ G+ ++ PV +
Sbjct: 219 ITRDSLLQLAKDL-------GMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQ 271
Query: 350 ---DEQVIGNGKEGPIAQALLDLILEDMQSG 377
E V +G+ G + +AL D + D+Q G
Sbjct: 272 HGGKEVVFASGQPGEVTKALYDELT-DIQYG 301
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 60.0 bits (146), Expect = 4e-10
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 33/269 (12%)
Query: 115 HMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASN 174
H +H VF+ G +++L +H +R+ RSA + ++P+ + +T++A+
Sbjct: 30 HGLHYASSVFEGERAYGGKIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLAANG 89
Query: 175 CRKGSLR--YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVS------KGVKVITSSI 226
+R W G + V Q+ ++ + + P KG+++ +
Sbjct: 90 LTDAYVRPVAWR----GSEMMG-VSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIAKW 144
Query: 227 PIKPPQFGTVKSVN---YLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 283
P+ + Y+ +SK AE G A+ LD G++AE N+ FV K+
Sbjct: 145 RRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFV-KDG 203
Query: 284 LLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTV--EEGKKAEEMILLGSGV 341
++ P D L G T + V+ LAK GI+V + EE E L G+
Sbjct: 204 VIHTPTPDCFLDGITRQTVIELAKR-------RGIEVVERHIMPEELAGFSECFLTGTAA 256
Query: 342 LVRPVVQWDEQVIG--NGKEGPIAQALLD 368
V PV + IG G I + L+D
Sbjct: 257 EVTPVSE-----IGEYRFTPGAITRDLMD 280
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 59.8 bits (146), Expect = 6e-10
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 47/208 (22%)
Query: 199 HQSTFYVIVIQDDSP----FVS--KGVKVITSSIPIKPPQF--------GTVKSV-NYLP 243
+ F VI SP F K V + S ++ G K NY
Sbjct: 154 EEYIFCVIA----SPVGAYFKGGVKPVSIWVSD------EYDRAAPGGTGAAKVGGNYAA 203
Query: 244 NVLSKMEAEETGAFAAIWLDG-EG-FIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKR 301
++L++ EA+E G ++LD E +I E MN F+TK+ + P IL G T
Sbjct: 204 SLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDS 263
Query: 302 VLTLAKALVREGKLHGIKV--GNVTVEEGKKA------EEMILLGSGVLVRPV--VQW-- 349
+L LA+ L G+ V V+++E + E G+ ++ P+ +++
Sbjct: 264 LLQLAEDL-------GLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKD 316
Query: 350 DEQVIGNGKEGPIAQALLDLILEDMQSG 377
E VIG+G+ GP+ Q L D + +Q G
Sbjct: 317 KEFVIGDGEVGPVTQKLYDELT-GIQFG 343
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 58.7 bits (143), Expect = 9e-10
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 120 GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGS 179
G G F TA + DG + L +HL R+ + I L D L + + Q A+ G
Sbjct: 22 GDGCFTTARVRDGQVSLLSRHLQRLQDACERLAIPLD-DWAQLEQEMKQ--LAAELENGV 78
Query: 180 LRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVS-------KGVKVITSSIPI-KPP 231
L+ +S G G SP GC T I+ SP+ + +G+ + + + P
Sbjct: 79 LKVIISRGSGGRGYSPAGCAAPT--RILSV--SPYPAHYSRWREQGITLALCPTRLGRNP 134
Query: 232 QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD 291
+K +N L VL + E E+T A A+ LD EG++ E N+ F K ++ P D
Sbjct: 135 LLAGIKHLNRLEQVLIRAELEQTEADEALVLDSEGWVIECCAANL-FWRKGGVVYTPDLD 193
Query: 292 KI-LSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPVVQ 348
+ ++G + +L L G V + ++EE +A+E+ + S + V PV
Sbjct: 194 QCGVAGVMRQFILELLAQ-------SGYPVVEVDASLEELLQADEVFICNSLMPVWPVRA 246
Query: 349 WDEQV 353
E
Sbjct: 247 IGETS 251
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 41.1 bits (97), Expect = 6e-04
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 55/281 (19%)
Query: 114 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 173
DH G VFD A +G +LD H R+ RSA ++ + + +
Sbjct: 27 DHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKPTVSAEEIEAL-------- 78
Query: 174 NCRKGSLR------------YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKV 221
R+G R YW G F +ST + + +++ G +
Sbjct: 79 -AREGLKRFDPDTALYIRPMYWAEDG---FASGVAPDPESTRFALCLEEAPMPEPTGFSL 134
Query: 222 ITSSIPIKPPQFGT----VKSVNYLPNVLSKM--EAEETGAFAAIWLDGEGFIAEGPNMN 275
S P + P K+ PN ++ EA G A+ LD G +AE N
Sbjct: 135 TLS--PFRRPTLEMAPTDAKAGCLYPNN-ARALREARSRGFDNALVLDMLGNVAETATSN 191
Query: 276 VAFVTKERLLLMP----QFDKILSGCTAKRVLTLAKA---LVREGKLHGIKVGNVTVEEG 328
V F+ K+ ++ P F L+G T +RV+ L + V E L T E+
Sbjct: 192 V-FMVKDGVVFTPVPNGTF---LNGITRQRVIALLREDGVTVVETTL--------TYEDF 239
Query: 329 KKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 369
+A+E+ G+ V PV ++D++ + + GP+ + +L
Sbjct: 240 LEADEVFSTGNYSKVVPVTRFDDRSL---QPGPVTRRAREL 277
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 38.5 bits (89), Expect = 0.005
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 230 PPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERLLL 286
P G VKS+ NY P + + A+ G ++LD + ++ E + NV FV K R +
Sbjct: 228 PGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNV-FVVKGRTIS 286
Query: 287 MPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRP 345
P + IL G T K V+ +A + + + V V+E A+E+ G+ V+V P
Sbjct: 287 TPATNGTILEGITRKSVMEIA-----SDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAP 341
Query: 346 V---VQWDEQVIGNGKEGPIAQALLDLILEDMQSG 377
V +++V + + Q L +L +Q+G
Sbjct: 342 VGTITYQEKRVEYKTGDESVCQKLRS-VLVGIQTG 375
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 37.2 bits (86), Expect = 0.011
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 234 GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNM------NVAFVTKERLLL 286
G VKS NY P V S +EA+ +G ++LD A G N+ N+ F+ K ++
Sbjct: 195 GGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDA----ATGKNIEELSACNI-FILKGNIVS 249
Query: 287 MPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRP 345
P IL G T K + LA+ + + ++ +V+V+E +AEE+ G+ V+V+
Sbjct: 250 TPPTSGTILPGVTRKSISELARDIGYQ-----VEERDVSVDELLEAEEVFCTGTAVVVKA 304
Query: 346 V--VQWDEQVIGNGKEGPIAQALLDLILEDMQSG 377
V V + ++ + L LIL ++Q G
Sbjct: 305 VETVTFHDKKVKYRTGEEALSTKLHLILTNIQMG 338
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 36.4 bits (84), Expect = 0.020
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 234 GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERLLLMPQF 290
G VK++ NY + ++ A+ G ++LD + ++ E + N+ F+ K+ ++ P
Sbjct: 246 GGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNI-FIVKDNVISTPAI 304
Query: 291 D-KILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVEEGKKAEEMILLGSGVLVRPV 346
IL G T K ++ +A++ G +V NVTV+E +A+E+ G+ V+V PV
Sbjct: 305 KGTILPGITRKSIIDVARS-------QGFQVEERNVTVDELLEADEVFCTGTAVVVSPV 356
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
The GRAMDC proteins are membrane proteins. Nothing is
known about its function. Members include: GRAMDC1A,
GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and
GRAMDC-like proteins. All of the members, except for
GRAMDC4 are included in this hierarchy. Each contains a
single PH-GRAM domain at their N-terminus. The GRAM
domain is found in glucosyltransferases, myotubularins
and other putative membrane-associated proteins. The
GRAM domain is part of a larger motif with a pleckstrin
homology (PH) domain fold.
Length = 111
Score = 28.6 bits (65), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 88 QQFLAMYSSIFGGITTDPAAMVIPMDD 114
+ + YS+IFG T +VIP D
Sbjct: 34 ENHICFYSNIFGWETK----LVIPFKD 56
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional.
Length = 266
Score = 29.6 bits (67), Expect = 2.4
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 55/190 (28%)
Query: 120 GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGS 179
+G F + + DG + LD HL R +R AS D +R
Sbjct: 24 NYGHFTSMQVRDGRVRGLDLHLQR-LRRASRELFGAALDDDRVR--------------AQ 68
Query: 180 LRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKG------VKVITSSIPIKPPQF 233
LR L+AG D + V V D F + V V TS P
Sbjct: 69 LRAALAAGPADASVR----------VTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGP 118
Query: 234 GTVKSVNY---LPNVLSKMEAEETGAFAAIWL---------------DGEGFIAEGPNMN 275
++SV Y LP++ + G F + L D +G ++EG N
Sbjct: 119 LRLQSVPYERELPHI------KHVGTFGQLHLRRLAQRAGFDDALFVDPDGRVSEGATWN 172
Query: 276 VAFVTKERLL 285
+ F ++
Sbjct: 173 LGFWDGGAVV 182
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 29.7 bits (66), Expect = 3.0
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 234 GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGE--GFIAEGPNMNVAFVTKERLLLMPQF 290
G VK++ NY P + A+ G ++LD + I E N+ V ++
Sbjct: 228 GGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATS 287
Query: 291 DKILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVEEGKKAEEMILLGSGVLVRPV 346
IL G T K ++ +A L G KV V VEE K+AEE+ G+ V V
Sbjct: 288 GTILGGITRKSIIEIALDL-------GYKVEERRVPVEELKEAEEVFCTGTAAGVASV 338
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 29.4 bits (65), Expect = 4.4
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 193 LSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAE 252
+SPV +TF++ D F S G+ S + P G S+ P + +
Sbjct: 217 ISPVLPGSNTFFITCSGDKPHFASGGILTPISPMKTPTPGTGYNYSLWLGPRPVPRFLGN 276
Query: 253 ETGAFAAIWLDGEGFIAEG 271
+ + +W G + +G
Sbjct: 277 SSKLY--LWYHYTGPVLDG 293
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 28.9 bits (65), Expect = 4.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 83 NQKSKQQFLAMYSSIFGGITTDPA 106
N K Q AM +FGGIT PA
Sbjct: 65 NAAMKSQIDAMSHVMFGGITHPPA 88
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2). All proteins in this
superfamily for which functions are known are DNA
polymerases.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1172
Score = 28.9 bits (64), Expect = 6.7
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 21 HVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSA-QLSDVPLLSCSEAIERIKS 79
+ +P +S+ R+ FG R+CGR ++ SA +L SE +++I
Sbjct: 621 NDLKIPTWSKIGRLRRSPKFGRRFGERTCGRMICDVEISAKELIRCKSYDLSELVQQILK 680
Query: 80 TQANQKSKQQFLAMYS 95
T+ MYS
Sbjct: 681 TERKVIPIDNINNMYS 696
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 28.2 bits (64), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 60 AQLSDVPL----LSCSEAIERIKSTQAN 83
A+L+ PL +SC EA+E I+ +A
Sbjct: 224 AELAGAPLYIVHVSCKEALEAIRRARAR 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,635,166
Number of extensions: 1913223
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 39
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)