RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016536
(387 letters)
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 175 bits (447), Expect = 7e-53
Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 22/271 (8%)
Query: 109 VIPMDDHMVHRGH---GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 165
+D R G+F+T + H +R+ SA I
Sbjct: 16 SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71
Query: 166 LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSS 225
LIQ + N G ++ LS G L+ G I + V++I+ +
Sbjct: 72 LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQL---IFQTFNYSIQKHPVRLISIN 128
Query: 226 -IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 284
+ K +KSVNYL ++++ +A GA A++ + E + E N+ + L
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANLFLIENNIL 188
Query: 285 LLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVL 342
D IL G T R+++ + + V ++T + + A+ + L S
Sbjct: 189 YTPRVEDGILPGITRARLISHCQQH-------KMSVQEISLTKKRIEDADAVFLTNSLQG 241
Query: 343 VRPVVQWDEQVIGNGKEGPIAQALLDLILED 373
+R V+ D + PI L+ L+ +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 172 bits (439), Expect = 1e-51
Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 16/266 (6%)
Query: 109 VIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 168
+ + D G G F TA + DG + L H+ R+ + I F L + +
Sbjct: 11 SLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDF-WPQLEQEMKT 69
Query: 169 TVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ---DDSPFVSKGVKVITSS 225
A+ + G L+ +S G G S + +T + V ++G+ + S
Sbjct: 70 L--AAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSP 127
Query: 226 IP-IKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 284
+ + P +K +N L VL + E+T A A+ LD EG++ E N+ + +
Sbjct: 128 VRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVV 187
Query: 285 LLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVL 342
++G + + L ++ ++EE +A+EM++ + +
Sbjct: 188 YTPRLDQAGVNGIMRQFCIRLLAQS-------SYQLVEVQASLEESLQADEMVICNALMP 240
Query: 343 VRPVVQWDEQVIGNGKEGPIAQALLD 368
V PV + + L +
Sbjct: 241 VMPVCACGDVSFSSATLYEYLAPLCE 266
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 168 bits (429), Expect = 5e-50
Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 17/266 (6%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQD---DSPFVSKGVKVITSS- 225
V + G + + ++ G + ++ + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED 136
Query: 226 IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLL 285
I +KS+N L VL+K EA E G + A L + EG + NV + L
Sbjct: 137 IRWLRCD---IKSLNLLGAVLAKQEAHEKGCYEA-ILHRNNTVTEGSSSNVFGIKDGILY 192
Query: 286 LMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLV 343
P + IL G T V+ A + + V T E K +E+ + + +
Sbjct: 193 THPANNMILKGITRDVVIACANEI-------NMPVKEIPFTTHEALKMDELFVTSTTSEI 245
Query: 344 RPVVQWDEQVIGNGKEGPIAQALLDL 369
PV++ D ++I +GK G + L
Sbjct: 246 TPVIEIDGKLIRDGKVGEWTRKLQKQ 271
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 169 bits (431), Expect = 6e-50
Identities = 57/318 (17%), Positives = 111/318 (34%), Gaps = 35/318 (11%)
Query: 78 KSTQANQKSKQQFLAMYSSIFGGIT--TDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLY 135
+ + KS + + +GG +P ++ DD + RG G+F+T I DG+
Sbjct: 2 MALEPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHAC 61
Query: 136 ELDQHLDRIIRSASMAKIQLPFD---RKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQ 192
+ +H +R SA++ + P K+ + + S N + S + LS G
Sbjct: 62 NVRRHGERFKASAALLGLPEPILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTG 121
Query: 193 LSPVGCHQSTFYVIVIQDDSPFVS------------------KGVKVITSSIPIKPPQFG 234
L+ + + VS K + S + P +
Sbjct: 122 LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWL 181
Query: 235 T--VKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK 292
T K++ Y N+ + A+ G I+ D + EG V +++
Sbjct: 182 TVGAKTLAYAANMAALRYAKSNGFDDVIFTD-GDRVLEGATSTVVSFKGDKIRTPSPGGD 240
Query: 293 ILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPVVQWD 350
IL G T + A G + ++++++ A+ + L+ S V + D
Sbjct: 241 ILPGTTQAALFAHATEK-------GWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLD 293
Query: 351 EQVIGNGKEGPIAQALLD 368
+ +AL+
Sbjct: 294 GHKLRKPDNEKEIKALIT 311
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 166 bits (423), Expect = 5e-49
Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 26/276 (9%)
Query: 109 VIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 168
+ + D + G G+F+T A+ G L++HL R+ ++ +P D +LR+ L+
Sbjct: 33 ELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGC--RRLAIPLDTAALRQELLA 90
Query: 169 TVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVS-----KGVKVIT 223
+A G + ++ G G +P I+ P +GV++
Sbjct: 91 FCAA--LGDGVAKLIVTRGEGLRGYAPPAEASPR--RILSGSPRPAYPERHWQQGVRLFA 146
Query: 224 SSIPI-KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKE 282
+ + P +K +N L VL++ E + G + LD + EG N+ + +
Sbjct: 147 CRTRLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNL-LLVLD 205
Query: 283 RLLLMPQFDK-ILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGS 339
L+ P + ++G +L A+ + G+ + +V++ E A+E+ L S
Sbjct: 206 GTLVAPDLRRCGVAGVMRAELLERAEGI-------GVPLAIRDVSMAELATADEVFLCNS 258
Query: 340 GVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQ 375
+ PV DE V G + + L D + +D+
Sbjct: 259 QFGIWPVRALDEHVWP---VGELTRKLQDQLRDDLD 291
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 151 bits (383), Expect = 6e-43
Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 31/274 (11%)
Query: 114 DHMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILI 167
H +H G VF +TA ++ L +H+ R SA + ++++PF + L +
Sbjct: 26 SHALHYGTSVFEGIRAYETAK--GPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIK 83
Query: 168 QTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ----DDSPFVSKGVKVIT 223
+ V + R +R G ++P+ + + V + V KG ++IT
Sbjct: 84 EVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLIT 143
Query: 224 SSIP-----IKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVA 277
SS + P + K NY+ + L+KMEA GA A+ LD EG++AEG N+
Sbjct: 144 SSWARFPANVMPGK---AKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENL- 199
Query: 278 FVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMI 335
F ++ ++ + L G T V+ +AK L G +V T ++ A+E+
Sbjct: 200 FFVRDGVIYALEHSVNLEGITRDSVIRIAKDL-------GYEVQVVRATRDQLYMADEVF 252
Query: 336 LLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 369
+ G+ V PV D + IG G GP+A L ++
Sbjct: 253 MTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREV 286
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 147 bits (373), Expect = 1e-41
Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 30/274 (10%)
Query: 114 DHMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILI 167
H +H G VF D+ ++ +H+ R+ SA + + + L
Sbjct: 27 SHALHYGTSVFEGIRCYDSHK--GPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACR 84
Query: 168 QTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVIT 223
+ +N +R + G ++P + + + + + +G+ +
Sbjct: 85 DVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMV 144
Query: 224 SSIP-----IKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVA 277
SS P K+ NYL ++L EA G I LD G+I+EG N+
Sbjct: 145 SSWNRAAPNTIPTA---AKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLF 201
Query: 278 FVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMI 335
V L P L G T ++ LAK L GI+V ++ E A+E+
Sbjct: 202 EVKDGVLFTPPFTSSALPGITRDAIIKLAKEL-------GIEVREQVLSRESLYLADEVF 254
Query: 336 LLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 369
+ G+ + PV D +G G+ GP+ + +
Sbjct: 255 MSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQA 288
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 147 bits (374), Expect = 2e-41
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 33/275 (12%)
Query: 114 DHMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILI 167
H +H G GVF TA ++ L +H R++ SA + ++ +PFD+++L
Sbjct: 49 THTLHYGMGVFEGVRAYKTADG-GTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQR 107
Query: 168 QTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQD-----DSPFVSKGVKVI 222
V + LR + G +S G I ++KG++V
Sbjct: 108 DVVRENKLESCYLRPIIWIGSEKLGVSAKGNTIHVA--IAAWPWGAYLGEEGLAKGIRVK 165
Query: 223 TSSIP-----IKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNV 276
TSS + + K+ Y+ ++L+ EA G A+ LD +G+++EG N
Sbjct: 166 TSSFTRHHVNVSMVR---AKASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENF 222
Query: 277 AFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEM 334
F+ L P L G T V+TLAK GI+V +T +E A+E
Sbjct: 223 -FLVNRGKLYTPDLASCLDGITRDTVITLAKEA-------GIEVIEKRITRDEVYTADEA 274
Query: 335 ILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 369
G+ V P+ + D + IG G GPI + L
Sbjct: 275 FFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSA 309
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 143 bits (364), Expect = 2e-40
Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 34/268 (12%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
+ V++T + +H R+ RSA + L ++L
Sbjct: 29 LDFSLFEKSLQGAVYETLRTYSRAPFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAG 88
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSI--- 226
++ ++ +L G+ V + + P + GV+V S++
Sbjct: 89 ADE-FKQEVRIKVYLFPDSGE-----VL-------FVFSPLNIPDLETGVEVKISNVRRI 135
Query: 227 --PIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 284
PP +K VL++ E + I L G + EG NV F+ KE
Sbjct: 136 PDLSTPPA---LKITGRTDIVLARREI--VDCYDVILLGLNGQVCEGSFSNV-FLVKEGK 189
Query: 285 LLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGV 341
L+ P D IL G T + V+ LAK+L I V V V E +A+EM L +
Sbjct: 190 LITPSLDSGILDGITRENVIKLAKSL-------EIPVEERVVWVWELFEADEMFLTHTSA 242
Query: 342 LVRPVVQWDEQVIGNGKEGPIAQALLDL 369
V PV + +E + GP+ L++
Sbjct: 243 GVVPVRRLNEHSFFEEEPGPVTATLMEN 270
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 139 bits (352), Expect = 4e-39
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 26/252 (10%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
+ + + ++ G VF T G L++HL R+ R A + P D L + +
Sbjct: 11 LALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEAFLEDL--EA 68
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIK 229
+ + + LR + G G +LS + + + + + +GV+V + +
Sbjct: 69 LLRAFPKAPCLRLRFTVGEGV-RLSEARPY-APLPLSLYR-------EGVRVRLTGYRVH 119
Query: 230 PPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQ 289
P K+ NYLP L+ EA + GAF + LD G + +G + + +E L +
Sbjct: 120 PDLAR-YKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSP-LLFREGTLYLL- 176
Query: 290 FDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPVV 347
+ L G T ++V A+ L G++V G E ++L GSGV + PV
Sbjct: 177 -EGGLEGITREKVAEAARGL-------GLRVERGLFRPEG--LRGHLLLAGSGVGLLPVR 226
Query: 348 QWDEQVIGNGKE 359
+++ +
Sbjct: 227 PPPPELLPLIER 238
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 113 bits (285), Expect = 9e-30
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 37/241 (15%)
Query: 114 DHMVHRGHGVFDTAAICDG-YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSA 172
+ +T G D+HL R+ SA A++ D + + +L +
Sbjct: 9 RDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSA--AELGFACDPQRIAEVLSDALDG 66
Query: 173 SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV----SKGVKVITSSIPI 228
+ R L+ GD S P+ K + + +
Sbjct: 67 AR-TAMRTRLALARN-GDATASA----------------QPYEPLAADKVWILRLARTRL 108
Query: 229 -KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLM 287
K+ ++ E T A + + G I EG NV + +L
Sbjct: 109 DSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLAT 168
Query: 288 PQFDK-ILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPV 346
P+ D +L G +L + E + ++ K A+ + + S + P
Sbjct: 169 PRLDCGLLPGVLRAELLDEGR--AEEAIY--------SYDDLKSAKALFVGNSLRGLIPA 218
Query: 347 V 347
Sbjct: 219 K 219
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 75.1 bits (185), Expect = 4e-16
Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 35/220 (15%)
Query: 122 GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLR 181
+F+T I G + H R +S ++ L +I+ + + R+G +R
Sbjct: 6 PLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIR 65
Query: 182 YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIK-PPQFGTVKSVN 240
+ D+ L P+ KV + P+ ++K +
Sbjct: 66 CRIDYNHHDYVLQC----------------FPYQ---QKVYRTFKPVFCDHIDYSLKFSD 106
Query: 241 YLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAK 300
+L+ + ++ I + +G + + N+ F + + P +L G
Sbjct: 107 R--TLLNNLLKQK-EECDEIMIIRQGKVTDCSIGNLIFR-QNNQWITPD-KPLLEGTQRA 161
Query: 301 RVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 340
++L K I + E+ + EE+ L+ +
Sbjct: 162 KLLEQKK----------IIAREIFFEDLAQYEEIRLINAM 191
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 68.8 bits (169), Expect = 5e-13
Identities = 75/335 (22%), Positives = 123/335 (36%), Gaps = 92/335 (27%)
Query: 98 FGGITTDPAAMVIPMDDHMVHRGHGVFD------TAAICDG--YLYELDQHLDRIIRSAS 149
+G I DP+A+V+ H G +F+ A DG + + + R+ SA
Sbjct: 62 YGPIQLDPSAIVL-------HYGQEIFEGLKAYRWA---DGSIVSFRPEANAARLQSSA- 110
Query: 150 MAKIQLP-FDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQL----------SPVGC 198
++ +P + L Q ++ W+ G+ L +G
Sbjct: 111 -RRLAIPELPEEVFIESLRQLIAVD-------EKWVPPAGGEESLYLRPFVIATEPGLGV 162
Query: 199 HQS---TFYVIVIQDDSP----FVS--KGVKVITSSIPIKPPQF--------GTVK-SVN 240
S + +I SP F K V V S ++ G K N
Sbjct: 163 RPSNEYRYLLIA----SPAGAYFKGGIKPVSVWLS------HEYVRASPGGTGAAKFGGN 212
Query: 241 YLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERL---LLMPQFD-KIL 294
Y ++L++ +A E G +WLD ++ E MN+ FV L+ P+ +L
Sbjct: 213 YAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLL 272
Query: 295 SGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKA------EEMILLGSGVLVRPV 346
G T +L LA G V + V+E +K E+ G+ ++ PV
Sbjct: 273 PGITRDSLLQLATDA-------GFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPV 325
Query: 347 --VQWDEQ--VIGNGKEGPIAQALLDLILEDMQSG 377
V+ + I +G+ G I AL D L +Q G
Sbjct: 326 SHVKHHDGEFTIADGQPGEITMALRDT-LTGIQRG 359
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 64.9 bits (159), Expect = 9e-12
Identities = 65/332 (19%), Positives = 119/332 (35%), Gaps = 84/332 (25%)
Query: 98 FGGITTDPAAMVIPMDDHMVHRGHGVFD------TAAICDG--YLYELDQHLDRIIRSAS 149
F +T PA+ + H +F+ D L+ ++DR++RSA
Sbjct: 56 FQNLTLHPASSSL-------HYSLQLFEGMKAFKGK---DQQVRLFRPWLNMDRMLRSA- 104
Query: 150 MAKIQLP-FDRKSLRRILIQTVSASNCRKGSLRYWLSAGVG------------DFQLSPV 196
++ LP FD+ L + + + + W+ G + L
Sbjct: 105 -MRLCLPSFDKLELLECIRRLIEVD-------KDWVPDAAGTSLYVRPVLIGNEPSLGVS 156
Query: 197 GCHQSTFYVIVIQDDSP----F---VSKGVKVITSSIPIK--PPQFGTVKSV-NYLPNVL 246
++ +VI+ P F V ++ I+ G K NY P VL
Sbjct: 157 QPRRALLFVIL----CPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVL 212
Query: 247 SKMEAEETGAFAAIWLDG-EGFIAEGPNMNVAFVTK----ERLLLMPQFD-KILSGCTAK 300
+ EA + G +WL G + + E MN+ L+ P + IL G +
Sbjct: 213 VQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQ 272
Query: 301 RVLTLAKAL----VREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPV--VQ 348
+L +A+ V E +T+++ +A E+ G+ V PV +
Sbjct: 273 SLLDMAQTWGEFRVVERT--------ITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 349 WDEQ--VIGNGKEGP-IAQALLDLILEDMQSG 377
+ ++ I + GP + L+++Q G
Sbjct: 325 YKDRNLHIPTMENGPELILRFQK-ELKEIQYG 355
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 63.4 bits (155), Expect = 3e-11
Identities = 68/332 (20%), Positives = 118/332 (35%), Gaps = 84/332 (25%)
Query: 98 FGGITTDPAAMVIPMDDHMVHRGHGVFD------TAAICDG--YLYELDQHLDRIIRSAS 149
++ P + + H +F+ D L++ + ++DR+ RSA
Sbjct: 76 LQNLSLHPGSSAL-------HYAVELFEGLKAFRGV---DNKIRLFQPNLNMDRMYRSA- 124
Query: 150 MAKIQLP-FDRKSLRRILIQTVSASNCRKGSLRYWLSAGVG------------DFQLSPV 196
+ LP FD++ L + Q V + W+ + L
Sbjct: 125 -VRATLPVFDKEELLECIQQLVKLD-------QEWVPYSTSASLYIRPTFIGTEPSLGVK 176
Query: 197 GCHQSTFYVIVIQDDSPF-------VSKGVKVITSSIPIK--PPQFGTVKSV-NYLPNVL 246
++ +V++ SP V + + ++ G K NY ++
Sbjct: 177 KPTKALLFVLL----SPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLF 232
Query: 247 SKMEAEETGAFAAIWLDGE-GFIAEGPNMNVAFV----TKERLLLMPQFD-KILSGCTAK 300
++ EA + G +WL GE I E MN+ E L P D IL G T +
Sbjct: 233 AQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRR 292
Query: 301 RVLTLAKAL----VREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPV--VQ 348
+L LA V E +T+++ A EM G+ +V PV +
Sbjct: 293 CILDLAHQWGEFKVSERY--------LTMDDLTTALEGNRVREMFGSGTACVVCPVSDIL 344
Query: 349 WDEQ--VIGNGKEGP-IAQALLDLILEDMQSG 377
+ + I + GP +A +L L D+Q G
Sbjct: 345 YKGETIHIPTMENGPKLASRILS-KLTDIQYG 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-04
Identities = 86/476 (18%), Positives = 146/476 (30%), Gaps = 154/476 (32%)
Query: 3 SLAKTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCG-RTEALIDSSAQ 61
SL + VPT + L + +F + TE
Sbjct: 15 SLEHVL----LVPTASFFIASQL----QE------------QFNKILPEPTEGFAADDEP 54
Query: 62 LSDVPLLS-----CSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHM 116
+ L+ S +E K Q +Q + G +D
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG------------ND-- 100
Query: 117 VHRGHGVFDTAAICDGYLYELDQHLDR---IIRSASMAKIQL--PFDRKSLRRILIQTVS 171
+H A+ L E D L + +I++ A+I PFD+KS L + V
Sbjct: 101 IH---------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSALFRAVG 150
Query: 172 ASNCR-------KGS-------LR--YWLSAG-VGDFQLSPVGCHQSTFYVIV--IQDDS 212
N + +G+ LR Y VGD + T ++ D
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL----IKFSAETLSELIRTTLDAE 206
Query: 213 PFVSKGVKVIT--------------SSIPIKPPQFGTVKSVNYL--PNVLSKMEAEETGA 256
++G+ ++ SIPI P G ++ +Y+ +L E
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 257 FAAIWLDGEG-----FIAEGPNMNVAFVTKERLLLMPQFDKIL--SGCTAKR---VLTLA 306
+G IAE + +F R + +L G +L
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAI-----TVLFFIGVRCYEAYPNTSLP 320
Query: 307 KALVREGKLHGIK-------VGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQV-IG--N 356
+++ + + + N+T E+ ++ + + L P +QV I N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQ---VQDYVNKTNSHL--PA---GKQVEISLVN 372
Query: 357 GKE-----GPIAQAL--LDLILEDM-------QSGPP--------TVR---VAVPY 387
G + GP Q+L L+L L QS P + R VA P+
Sbjct: 373 GAKNLVVSGP-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Score = 35.8 bits (82), Expect = 0.028
Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 95/273 (34%)
Query: 13 PV--P----TKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSC--GRTEALIDSSAQLSD 64
P+ P +L H+V V ++ L ++ GE+R G ++ L+ ++ +++
Sbjct: 235 PISCPLIGVIQLAHYV----VTAKLLGFTP----GELRSYLKGATGHSQGLV-TAVAIAE 285
Query: 65 VP-----LLSCSEAIER-----IKSTQANQKSKQQFLAMYSSIFGGITTDPAAMV----- 109
+S +AI ++ +A + + S+ P+ M+
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPMLSISNL 344
Query: 110 ---------------IPMDDHM---VHRGHGVFDTAAICDGY---LYELDQHLDRIIRSA 148
+P + + G + G LY L+ L + +
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGA----KNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 149 SMAKIQLPF-DRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGC--HQSTFY- 204
+ + ++PF +RK K S R+ L PV H S
Sbjct: 401 GLDQSRIPFSERKL---------------KFSNRF-L----------PVASPFH-SHLLV 433
Query: 205 --VIVIQDDSPFVSKGVKVITSSIPIKPPQFGT 235
+I D V V I I P + T
Sbjct: 434 PASDLINKD--LVKNNVSFNAKDIQI--PVYDT 462
Score = 35.0 bits (80), Expect = 0.045
Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 94/277 (33%)
Query: 3 SLAKTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALI-DSSAQ 61
S+ + N P LT H F G G + IR A+I ++
Sbjct: 1660 SILDIVINN---PVNLTIH------F--------GGEKG--KRIRE--NYSAMIFETIVD 1698
Query: 62 LSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGG------IT--TDPAAMVIPMD 113
E E S F T T PA ++
Sbjct: 1699 GKLKTEKIFKEINEHSTSY----------------TFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 114 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRS-------ASMAKIQLPFD------RK 160
+ G+ A G H S AS+A + + +
Sbjct: 1743 AFEDLKSKGLIPADATFAG-------H------SLGEYAALASLADV-MSIESLVEVVFY 1788
Query: 161 SLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVI--VIQDDSPFV--- 215
R + +Q + G Y + A + +++ ++ YV+ V + V
Sbjct: 1789 --RGMTMQVAVPRD-ELGRSNYGMIA-INPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 216 ---SKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKM 249
+ + + + G +++++ + NVL+ +
Sbjct: 1845 NYNVENQQYVAA---------GDLRALDTVTNVLNFI 1872
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.047
Identities = 52/306 (16%), Positives = 92/306 (30%), Gaps = 101/306 (33%)
Query: 1 MASLAKTISQNQPVPTKLTHHVNNL----PVFS-RNLCYSRTGSFGEMRFIRSCGRTEAL 55
M+ + Q + + L VF+ N+ SR + ++R +AL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR--------QAL 144
Query: 56 IDSSAQLSDVPLLS------CSEAIERIKSTQANQ--KSKQQFLAMYSSIF---GGITTD 104
+ +L + K+ A S + M IF
Sbjct: 145 L----ELRPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 105 PAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFD--RKSL 162
P ++ + + Y++D + RS + I+L + L
Sbjct: 195 PETVLEMLQK--------------LL----YQIDPNWT--SRSDHSSNIKLRIHSIQAEL 234
Query: 163 RRI----------LI-------QTVSASN--CRKGSL---RYWLSAGVGDFQLSPVGCHQ 200
RR+ L+ + +A N C+ L R+ V DF LS
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--ILLTTRF---KQVTDF-LSA----A 284
Query: 201 STFYVIVIQDDSPFV---SKGV--KVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETG 255
+T ++ + K + K + P + V + N P LS + AE
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTN--PRRLS-IIAESIR 338
Query: 256 AFAAIW 261
A W
Sbjct: 339 DGLATW 344
Score = 34.1 bits (77), Expect = 0.096
Identities = 37/281 (13%), Positives = 64/281 (22%), Gaps = 118/281 (41%)
Query: 112 MDDHMVHRGHG------VFDTAAICDGYLYELDQHLDRIIRSASMAKI-QLPFDRKSLRR 164
MD + VF+ A + + ++ I+ + I D S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 165 ILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITS 224
L T+ K F V++ + F+ +K
Sbjct: 66 RLFWTL----LSKQEEMV------------------QKFVEEVLRINYKFLMSPIKTEQ- 102
Query: 225 SIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 284
+ P T + + L + D + F NV RL
Sbjct: 103 ----RQPSMMTRMYIEQR-DRL--------------YNDNQVF----AKYNV-----SRL 134
Query: 285 LLMPQFDKILSGCTAKRVLTLAKAL--VREGK---LHGIKVGNVTVEEGKKAEEMILLGS 339
+ L L +AL +R K + G + LGS
Sbjct: 135 ---------------QPYLKLRQALLELRPAKNVLIDG----------------V--LGS 161
Query: 340 G--VLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGP 378
G + L ++
Sbjct: 162 GKTWVA-------------------LDVCLSYKVQCKMDFK 183
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained
modeling and minimization., electron transport; HET:
HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Length = 129
Score = 30.0 bits (67), Expect = 0.54
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 247 SKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF-----VTKERLLLMPQFDKILSGCTA 299
K + + IW + F E + A K+ L I C
Sbjct: 62 LKPFDSKYSSSPKIWAERAKFDTEIADFAKAVDGAKGKIKDVDTLKAAMQPIGKACGN 119
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 29.6 bits (66), Expect = 1.7
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 182 YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDS-----PFVSKGVKVITSSIPIKPP-QF-- 233
YW + S +Y + + P+ +GV +++ PI +F
Sbjct: 105 YWNKMNGTASVAPLLHYDSSDYYQLPKATEKDVLTEPYFYEGVFMVSYVSPIMKEGEFAG 164
Query: 234 --GTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFI 268
G S+ Y+ V+SK+ +TG +A + + G I
Sbjct: 165 IGGVDVSLEYVDEVVSKVRTFDTG-YAFM-VSNSGVI 199
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A
{Rhodobacter sphaeroides} SCOP: a.24.3.2
Length = 130
Score = 28.2 bits (62), Expect = 2.7
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 243 PNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF------VTKERLLLMPQFDKILSG 296
S + + T A AAIW D +GF A+G A + L K+
Sbjct: 59 APGTSADDVKGTAAKAAIWQDADGFQAKGMAFFEAVAALEPAAGAGQKELAAAVGKVGGT 118
Query: 297 CTA 299
C +
Sbjct: 119 CKS 121
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle;
HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB:
3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A*
2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A*
2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Length = 127
Score = 28.1 bits (62), Expect = 2.8
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 252 EETGAFAAIWLDGEGFIAEGPNMNVAFV-------TKERLLLMPQFDKILSGCTA 299
E A IW D F + V + L F + + C A
Sbjct: 64 EGGDARPEIWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKA 118
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 28.9 bits (64), Expect = 3.0
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 182 YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDS-----PFVSKGVKVITSSIPIKPP-QF-- 233
Y V S +Y + P+ +G+ +++ PI +F
Sbjct: 106 YCNKINGPVIIEPLVHYDSSDYYQLPKTTGKDTLTEPYFYEGIFMVSYDSPIFKNGEFAG 165
Query: 234 --GTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPN 273
G + Y+ +V S + +TG +A + + G P
Sbjct: 166 IAGVDVPLEYVDDVASSIRTFDTG-YAFM-VSNTGIFLSHPT 205
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown
function, uncharacterized protein; 1.50A {Vibrio
cholerae o1 biovar eltor str}
Length = 240
Score = 27.2 bits (60), Expect = 9.0
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 212 SPFVSK--GVKVITSSIPIKPPQFGTVK-------SVNYLPNVLSKMEAEETGAFAAIWL 262
+P+ G +++ + P+K G S+ L ++++++ + G + I +
Sbjct: 108 APYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAG-YVFI-V 165
Query: 263 DGEGFI 268
+G
Sbjct: 166 SEDGTT 171
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 27.1 bits (61), Expect = 9.9
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 314 KLHGIKV----GN-VTVEEGKKAEEMI--LLGSGVLVRPVVQW 349
+ +K+ GN V ++ G +A + L +G + R
Sbjct: 294 RFEKVKLYPANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAAL 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,951,393
Number of extensions: 368983
Number of successful extensions: 836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 28
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)