RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016536
(387 letters)
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 136 bits (343), Expect = 6e-38
Identities = 57/279 (20%), Positives = 105/279 (37%), Gaps = 17/279 (6%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDG----YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 165
+ + H +H G VF+ D ++ +H+ R+ SA + + + L
Sbjct: 19 VHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEA 78
Query: 166 LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKV 221
+ +N +R + G ++P + + + + + +G+
Sbjct: 79 CRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDA 138
Query: 222 ITSSIPIKPP---QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 278
+ SS P NYL ++L EA G I LD G+I+EG N+
Sbjct: 139 MVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFE 198
Query: 279 VTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLG 338
V L P L G T ++ LAK L E + ++ E A+E+ + G
Sbjct: 199 VKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ-----VLSRESLYLADEVFMSG 253
Query: 339 SGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSG 377
+ + PV D +G G+ GP+ + + + +G
Sbjct: 254 TAAEITPVRSVDGIQVGEGRCGPVTKRIQQA-FFGLFTG 291
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 131 bits (330), Expect = 2e-36
Identities = 57/275 (20%), Positives = 114/275 (41%), Gaps = 7/275 (2%)
Query: 96 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQL 155
+++ + I +D G GV++ + +G ++ +++H+DR+ SA +I +
Sbjct: 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 156 PFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV 215
P+ + ++L + V + G + + ++ G + +++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPL 122
Query: 216 SKGVK-VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNM 274
K V + + +KS+N L VL+K EA E G + AI + EG +
Sbjct: 123 ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAILHR-NNTVTEGSSS 181
Query: 275 NVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEM 334
NV + L P + IL G T V+ A + +K T E K +E+
Sbjct: 182 NVFGIKDGILYTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHEALKMDEL 236
Query: 335 ILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 369
+ + + PV++ D ++I +GK G + L
Sbjct: 237 FVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQ 271
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 91.3 bits (225), Expect = 1e-21
Identities = 50/264 (18%), Positives = 98/264 (37%), Gaps = 16/264 (6%)
Query: 110 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 169
+ + D G G F TA + DG + L H+ R+ + I F + + +
Sbjct: 12 LAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLA 71
Query: 170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPI- 228
+ G L+ +S G G S + +T + V + + + IT ++
Sbjct: 72 A---EQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPV 128
Query: 229 ---KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLL 285
+ P +K +N L VL + E+T A A+ LD EG++ E N+ + +
Sbjct: 129 RLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVVY 188
Query: 286 LMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLV 343
++G + + L ++ ++EE +A+EM++ + + V
Sbjct: 189 TPRLDQAGVNGIMRQFCIRLLAQ-------SSYQLVEVQASLEESLQADEMVICNALMPV 241
Query: 344 RPVVQWDEQVIGNGKEGPIAQALL 367
PV + + L
Sbjct: 242 MPVCACGDVSFSSATLYEYLAPLC 265
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 62.2 bits (150), Expect = 2e-11
Identities = 55/311 (17%), Positives = 97/311 (31%), Gaps = 38/311 (12%)
Query: 99 GGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG-----YLYELDQHLDRIIRSASMAKI 153
I + P +H +F+ G L+ ++DR++RSA +
Sbjct: 49 PRIQPFQNLTLHPAS-SSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCL 107
Query: 154 QLPFDRKSLRR----ILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVI--- 206
+ L I + + SL + L ++ +VI
Sbjct: 108 PSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCP 167
Query: 207 VIQDDSPFVSKGVKVITSSIPIKPPQFGTVK---SVNYLPNVLSKMEAEETGAFAAIWLD 263
V V ++ I+ G NY P VL + EA + G +WL
Sbjct: 168 VGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLY 227
Query: 264 GEGFIAEGPNMNVAFVT------KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHG 317
G FV L+ P IL G + +L +A+
Sbjct: 228 GPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTW----GEFR 283
Query: 318 IKVGNVTVEEGKKA------EEMILLGSGVLVRPVVQ----WDEQVIGNGKEGP-IAQAL 366
+ +T+++ +A E+ G+ V PV + I + GP +
Sbjct: 284 VVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRF 343
Query: 367 LDLILEDMQSG 377
L+++Q G
Sbjct: 344 QKE-LKEIQYG 353
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 129
Score = 28.4 bits (63), Expect = 0.83
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 247 SKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF-----VTKERLLLMPQFDKILSGCTA 299
K + + IW + F E + A K+ L I C
Sbjct: 62 LKPFDSKYSSSPKIWAERAKFDTEIADFAKAVDGAKGKIKDVDTLKAAMQPIGKACGN 119
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Length = 125
Score = 26.8 bits (59), Expect = 2.1
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 242 LPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFV-------TKERLLLMPQFDKIL 294
LP E A IW D F + V + L F +
Sbjct: 54 LPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVG 113
Query: 295 SGCTA 299
+ C A
Sbjct: 114 ASCKA 118
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 27.5 bits (59), Expect = 3.4
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 274 MNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREG 313
M V + E F + G A+ + +++AL G
Sbjct: 1 MKVLLLGFE-------FLPVKVGGLAEALTAISEALASLG 33
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 25.5 bits (56), Expect = 7.4
Identities = 6/51 (11%), Positives = 15/51 (29%)
Query: 72 EAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHG 122
AI + + + +A ++ F +T + + G
Sbjct: 12 VAIRDWLAGDSRADALDALMARFAEDFSMVTPHGVVLDKTALGELFRSKGG 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,416,137
Number of extensions: 66176
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 9
Length of query: 387
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,213,086
Effective search space: 363925800
Effective search space used: 363925800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.5 bits)