Your job contains 1 sequence.
>016538
MAQQSQVETLDLSSSNDQSQSSPSSSSDPSLSRNSSFSRLNAKAPEFVPTRNPQSTQSKP
QVQVQVQQPPQRVMMPPPPPPAAAMVHPHPPPPHPPSPHHVYPPHGTGAFHVIPVHHQMH
HQHHVPVQNYHHQQHQQHQHHRNHNHHHHRHQNHHHNNNNSHHQNNQYEDQQEGEVPGVK
DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF
KKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH
CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA
EKAIAELNDEGNWRSGLRVRLMLRRGV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016538
(387 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37... 607 2.3e-62 2
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c... 414 1.2e-41 2
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 329 1.0e-29 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 156 6.5e-16 2
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 157 1.4e-13 2
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 157 1.4e-13 2
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 156 2.0e-13 2
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 155 2.0e-12 2
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 153 4.4e-12 2
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 146 3.7e-11 2
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 151 4.7e-11 2
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 149 1.4e-10 2
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 148 2.0e-10 2
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 148 2.1e-10 2
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 146 5.0e-10 2
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 154 7.7e-10 1
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"... 148 1.0e-09 2
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp... 147 1.5e-09 2
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"... 145 2.8e-09 2
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 148 3.0e-09 2
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 143 5.1e-09 2
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma... 144 1.1e-08 2
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f... 144 2.2e-08 2
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 146 2.4e-08 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 127 3.2e-08 1
UNIPROTKB|F1NWE6 - symbol:LARP6 "Uncharacterized protein"... 144 5.4e-08 1
TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37... 143 7.4e-08 1
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr... 133 9.3e-08 2
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ... 142 2.8e-07 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 117 4.9e-07 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 133 6.9e-07 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 112 1.9e-06 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 130 2.9e-06 1
ZFIN|ZDB-GENE-041008-244 - symbol:zgc:162969 "zgc:162969"... 131 3.1e-06 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 122 1.4e-05 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 99 5.6e-05 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 110 0.00011 1
TAIR|locus:2017809 - symbol:La2 "La protein 2" species:37... 116 0.00015 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 112 0.00046 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 111 0.00060 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 111 0.00061 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 116 0.00063 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 110 0.00066 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 110 0.00080 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 110 0.00081 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 109 0.00096 1
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 607 (218.7 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 118/183 (64%), Positives = 139/183 (75%)
Query: 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHS 251
GL ++SIQK++NQVEYYFSDLNLATTDHL+RFI KDPEGYVPI VASFKKIKA+I+++S
Sbjct: 188 GLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNS 247
Query: 252 HLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA 311
LA EDGKK++R +P+TES +EELQSRI+VAENLPEDHC+QNLMKIFS
Sbjct: 248 QLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFST 307
Query: 312 VGSVKTIRTCLPQTXXXXXX-XXXXXXXXXXMLFSNKLHAFVEYESVELAEKAIAELNDE 370
VGSVK IRTC PQ LFSNK+HAFVEYE VELAE+A+ EL++
Sbjct: 308 VGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEA 367
Query: 371 GNW 373
GNW
Sbjct: 368 GNW 370
Score = 48 (22.0 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 40 LNAKAPEFVPTR 51
LNA APEFVP R
Sbjct: 49 LNAGAPEFVPGR 60
>TAIR|locus:2089508 [details] [associations]
symbol:LARP6c "La related protein 6c" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
Uniprot:Q9LHL3
Length = 455
Score = 414 (150.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 83/181 (45%), Positives = 113/181 (62%)
Query: 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSH 252
L+D+ K++ QVEY F+D++L + + + I KDPEGYVP+S +AS KKIKA+ S+H
Sbjct: 140 LSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHL 199
Query: 253 LAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAV 312
++ EDGKK+KR + T+ D EELQ R VVAENLP+DH +QNL KIF V
Sbjct: 200 VSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVV 259
Query: 313 GSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372
G+VK IR C P L SNK+HA +EY++ +A+KA+ +LNDE N
Sbjct: 260 GNVKAIRICHPPESNSSRPKGD-------FLMSNKIHALIEYDNTVIADKAVEKLNDERN 312
Query: 373 W 373
W
Sbjct: 313 W 313
Score = 44 (20.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 41 NAKAPEFVP 49
NA+APEFVP
Sbjct: 36 NAQAPEFVP 44
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 70/179 (39%), Positives = 101/179 (56%)
Query: 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLA 254
DE QK++ QVEYYFSD NL T L+ + ++ +G+VPIST+A+F K+K + H+ +
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160
Query: 255 XXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGS 314
D KK+KR +PL E + + + V+ ENLPEDH ++N+ +IF GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 218
Query: 315 VKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373
+K++ C P +LHAFVEYE+VE AEKA A LN+E +W
Sbjct: 219 IKSVSICDPNAVEESEKGGKKEN-----FIRTRLHAFVEYETVEAAEKAAATLNNEQDW 272
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 156 (60.0 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 39/141 (27%), Positives = 70/141 (49%)
Query: 175 EVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPI 234
E + KKE++ + + + + + QV+++F D+NL L I K +GYV I
Sbjct: 15 EEESTEQKKEREKKKRSRVK-QVLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDI 73
Query: 235 STVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAE 294
S + SF K+K + + +A +G +I+R+ PL E +++ SR V E
Sbjct: 74 SLLVSFNKMKKLTTDGKLIARAVKSSSVVELDLEGTRIRRRRPLGERP-KDVDSRTVYVE 132
Query: 295 NLPEDHCHQNLMKIFSAVGSV 315
LP++ H + ++F G+V
Sbjct: 133 LLPKNVNHSWIERVFGKCGNV 153
Score = 58 (25.5 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E AEKAI LN+
Sbjct: 171 AFVEFETKEQAEKAIEFLNN 190
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 157 (60.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 43/147 (29%), Positives = 70/147 (47%)
Query: 169 EDQQEGEVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDP 228
E+Q+ E K K+EKK + + + QV+++F D NL L I K
Sbjct: 4 ENQKTMEESTEKRKEEKKKRSRV---KQVLADIAKQVDFWFGDANLHKDRFLREQIEKSR 60
Query: 229 EGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQS 288
+GYV IS + SF K+K + + +A +G +I+R+ PL E +E +
Sbjct: 61 DGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EE 119
Query: 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315
R V E LP++ H + ++F G+V
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNV 146
Score = 52 (23.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 164 AFVEFETKEQAAKAIEFLNN 183
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 157 (60.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 43/147 (29%), Positives = 70/147 (47%)
Query: 169 EDQQEGEVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDP 228
E+Q+ E K K+EKK + + + QV+++F D NL L I K
Sbjct: 4 ENQKTMEESTEKRKEEKKKRSRV---KQVLADIAKQVDFWFGDANLHKDRFLREQIEKSR 60
Query: 229 EGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQS 288
+GYV IS + SF K+K + + +A +G +I+R+ PL E +E +
Sbjct: 61 DGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EE 119
Query: 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315
R V E LP++ H + ++F G+V
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNV 146
Score = 52 (23.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 164 AFVEFETKEQAAKAIEFLNN 183
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 156 (60.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 39/141 (27%), Positives = 70/141 (49%)
Query: 175 EVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPI 234
E + KKE++ + + + + + QV+++F D+NL L I K +GYV I
Sbjct: 15 EEESTEQKKEREKKKRSRVK-QVLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDI 73
Query: 235 STVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAE 294
S + SF K+K + + +A +G +I+R+ PL E +++ SR V E
Sbjct: 74 SLLVSFNKMKKLTTDGKLIARAVKSSSVVELDLEGTRIRRRRPLGERP-KDVDSRTVYVE 132
Query: 295 NLPEDHCHQNLMKIFSAVGSV 315
LP++ H + ++F G+V
Sbjct: 133 LLPKNVNHSWIERVFGKCGNV 153
Score = 58 (25.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E AEKAI LN+
Sbjct: 171 AFVEFETKEQAEKAIEFLNN 190
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 155 (59.6 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 43/147 (29%), Positives = 70/147 (47%)
Query: 169 EDQQEGEVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDP 228
E+Q+ E K K+EKK + + + QV+++F D NL L I K
Sbjct: 4 ENQKTME-ESTKRKEEKKKRSRV---KQVLADIAKQVDFWFGDANLHKDKFLREQIEKSR 59
Query: 229 EGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQS 288
+GYV IS + SF K+K + + +A +G +I+R+ PL E +E +
Sbjct: 60 DGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EE 118
Query: 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315
R V E LP++ H + ++F G+V
Sbjct: 119 RTVYVELLPKNVTHSWIERVFGKCGNV 145
Score = 52 (23.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 163 AFVEFETKEQAAKAIEFLNN 182
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 153 (58.9 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 39/138 (28%), Positives = 73/138 (52%)
Query: 181 DKKEKKDHQHGGLN--DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDP-EGYVPISTV 237
D EKKD++ + + + V QVE++F D+NL D ++ I++ +GY+ I+ +
Sbjct: 24 DLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHK-DRFMKSIIEQSRDGYIDIAVL 82
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLP 297
+F ++K + + +A ++G +I+R+ PL E+ +++ SR V E LP
Sbjct: 83 TTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLP 141
Query: 298 EDHCHQNLMKIFSAVGSV 315
+ H L ++FS G V
Sbjct: 142 KTVTHIWLERVFSKCGHV 159
Score = 56 (24.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 346 NKLHAFVEYESVELAEKAIAELND 369
+K AFVE+E+ E A+KA+ LN+
Sbjct: 173 SKGFAFVEFETQEQAQKAVEMLNN 196
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 146 (56.5 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 37/135 (27%), Positives = 65/135 (48%)
Query: 181 DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240
+KK++ + + + + + QV+++F D NL L I K +GYV IS + SF
Sbjct: 18 EKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 241 KKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300
K+K + + +A +G +I+R+ PL E +E R V E LP++
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNV 136
Query: 301 CHQNLMKIFSAVGSV 315
H + ++F G+V
Sbjct: 137 NHSWIERVFGKCGNV 151
Score = 52 (23.4 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 169 AFVEFETKEQAAKAIEFLNN 188
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 151 (58.2 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 42/147 (28%), Positives = 69/147 (46%)
Query: 169 EDQQEGEVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDP 228
E E + K++K+K+ L D ++ QV+++F D NL L I K
Sbjct: 9 EKAMEESIEKKKEEKKKRSRVKQVLAD-----IVKQVDFWFGDANLHKDRFLREQIEKSR 63
Query: 229 EGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQS 288
+GYV IS + SF K+K + + +A +G +I+R+ PL E +E
Sbjct: 64 DGYVDISLLVSFNKMKKLTTDGKLIARALKSSAVVELDLEGTRIRRKKPLGERPKDE-DE 122
Query: 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315
R V E LP++ H + ++F G+V
Sbjct: 123 RTVYVELLPKNVNHSWIERVFGKCGNV 149
Score = 52 (23.4 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 167 AFVEFETKEQAAKAIEFLNN 186
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 149 (57.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 39/144 (27%), Positives = 68/144 (47%)
Query: 172 QEGEVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGY 231
QE + +KK++ + + + + + QV+++F D NL L I K +GY
Sbjct: 8 QEKAMEECTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGY 67
Query: 232 VPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIV 291
V IS + SF K+K + + +A +G +I+R+ PL E +E R V
Sbjct: 68 VDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-DERTV 126
Query: 292 VAENLPEDHCHQNLMKIFSAVGSV 315
E LP++ H + ++F G+V
Sbjct: 127 YVELLPKNVNHSWIERVFGKCGNV 150
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 168 AFVEFETKEQAAKAIEFLNN 187
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 148 (57.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 37/135 (27%), Positives = 65/135 (48%)
Query: 181 DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240
+KK++ + + + + + QV+++F D NL L I K +GYV IS + SF
Sbjct: 18 EKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 241 KKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300
K+K + + +A +G +I+R+ PL E +E R V E LP++
Sbjct: 78 NKMKKLTTDRKLIARALKSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNV 136
Query: 301 CHQNLMKIFSAVGSV 315
H + ++F G+V
Sbjct: 137 NHSWIERVFGKCGNV 151
Score = 52 (23.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 169 AFVEFETKEQAAKAIEFLNN 188
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 148 (57.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 37/135 (27%), Positives = 65/135 (48%)
Query: 181 DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240
+KK++ + + + + + QV+++F D NL L I K +GYV IS + SF
Sbjct: 18 EKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 241 KKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300
K+K + + +A +G +I+R+ PL E +E R V E LP++
Sbjct: 78 NKMKKLTTDRKLIARALKSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNV 136
Query: 301 CHQNLMKIFSAVGSV 315
H + ++F G+V
Sbjct: 137 NHSWIERVFGKCGNV 151
Score = 52 (23.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 169 AFVEFETKEQAAKAIEFLNN 188
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 146 (56.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 37/135 (27%), Positives = 65/135 (48%)
Query: 181 DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240
+KK++ + + + + + QV+++F D NL L I K +GYV IS + SF
Sbjct: 18 EKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 241 KKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300
K+K + + +A +G +I+R+ PL E +E R V E LP++
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNV 136
Query: 301 CHQNLMKIFSAVGSV 315
H + ++F G+V
Sbjct: 137 NHSWIERVFGKCGNV 151
Score = 52 (23.4 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 350 AFVEYESVELAEKAIAELND 369
AFVE+E+ E A KAI LN+
Sbjct: 169 AFVEFETKEQAAKAIEFLNN 188
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 35/126 (27%), Positives = 64/126 (50%)
Query: 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSH 252
+++E+ ++L QVEYYFSD N L K+ + Y+ I +ASF ++K I +
Sbjct: 1 MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQL 60
Query: 253 LAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAV 312
+ EDGK ++R +PL E+ ++ + + ++ PED + + + F+A
Sbjct: 61 ITEALKKSTRLQVSEDGKMVRRLDPLPEN-ID--CGKTLYSKGWPEDTTIEKVQEFFNAN 117
Query: 313 GSVKTI 318
G K +
Sbjct: 118 GGYKVV 123
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 148 (57.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 32/119 (26%), Positives = 64/119 (53%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G ++++E + + ++E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 73 GGENEREDLEQEWQPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
SFKK+K + A ED +K++R P+ E L S++++ +L
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 43 (20.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 303 QNLMKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEK 362
++L+K+F G + ++R P + A VE+E VE A K
Sbjct: 215 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQV---GTQECAIVEFEEVEAAIK 271
Query: 363 A 363
A
Sbjct: 272 A 272
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 147 (56.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 32/119 (26%), Positives = 64/119 (53%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G ++++E + + ++E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 73 GGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
SFKK+K + A ED +K++R P+ E L S++++ +L
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 43 (20.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 303 QNLMKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEK 362
++L+K+F G + ++R P + A VE+E VE A K
Sbjct: 215 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQV---GTQECAIVEFEEVEAAIK 271
Query: 363 A 363
A
Sbjct: 272 A 272
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 145 (56.1 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 31/119 (26%), Positives = 64/119 (53%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G +++++ + + ++E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 6 GGENERDDLEQEWQPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 65
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
SFKK+K + A ED +K++R P+ E L S++++ +L
Sbjct: 66 TSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 124
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 303 QNLMKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEK 362
++L+K+F G + ++R P + A VE+E VE A K
Sbjct: 148 EHLLKLFGTFGVISSVRMLKPGRELPPDIRRISNRYSQV---GTQECAIVEFEEVEAAIK 204
Query: 363 A 363
A
Sbjct: 205 A 205
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 148 (57.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 41/148 (27%), Positives = 67/148 (45%)
Query: 171 QQEGEVPGVKDKK-EKKDHQHGGLNDES--IQKVLNQVEYYFSDLNLATTDHLIRFILKD 227
++ + P +D +KKD GG + + Q+E+YF D NL+ L R++ +D
Sbjct: 33 EENSKEPAPEDASPDKKD---GGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQD 89
Query: 228 PEGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQ 287
P YVP+ +F KIK + +A E K+KR+ L D ++
Sbjct: 90 P--YVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLP--DQRDVN 145
Query: 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV 315
+ + E LP + H L ++FS G V
Sbjct: 146 DKTLYVEALPANATHDWLKEVFSRYGPV 173
Score = 41 (19.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 347 KLHAFVEYE---SVELAEKAIAEL 367
K AF+E+E S+E A KA A++
Sbjct: 188 KEFAFIEFEKSGSLEKAVKAFAQI 211
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 143 (55.4 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 31/119 (26%), Positives = 63/119 (52%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G +++++ + + + E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 9 GGENERDDGEQEWKPPDQELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 68
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
SFKK+K + A ED +K++R P+ E L S++++ +L
Sbjct: 69 TSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 127
Score = 43 (20.2 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 303 QNLMKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEK 362
++L+K+F G + ++R P + A VE+E VE A K
Sbjct: 151 EHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQV---GTQECAIVEFEEVEAAIK 207
Query: 363 A 363
A
Sbjct: 208 A 208
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 144 (55.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G ++ +E + + ++E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 73 GGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
SFKK+K + A ED +K++R P+ E L S++++ +L
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 303 QNLMKIFSAVGSVKTIRTCLP 323
++L+K+F G + ++R P
Sbjct: 215 EHLLKLFGTFGVISSVRILKP 235
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 144 (55.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 178 GVKDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTV 237
G ++ +E + + ++E I+K+++Q+E+YFSD NL L++ + ++ GYV + +
Sbjct: 73 GGENDREDLEPEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 238 ASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
SFKK+K + A ED +K++R P+ E L S++++ +L
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDL 191
Score = 37 (18.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 305 LMKIFSAVGSVKTIRTCLP 323
L+K+F G + ++R P
Sbjct: 217 LLKLFGTFGVISSVRILKP 235
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 146 (56.5 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 35/133 (26%), Positives = 72/133 (54%)
Query: 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSH 252
++D++ QK++ Q+EYYF ++NL D ++ LK+ +G+VPI+T+ +F ++ +I
Sbjct: 8 VHDDADQKIIKQLEYYFGNINLPR-DKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEK 66
Query: 253 LAXXXXXXXXX--XXXEDGKKIKR--QNPLTESDLE---ELQSRIVVAENLPEDHCHQNL 305
+A ED +KI+R +NP+ E+ LE +++ R V + D ++
Sbjct: 67 IANAVKNSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDI 126
Query: 306 MKIFSAVGSVKTI 318
++ + G + +
Sbjct: 127 IQWANQFGETENV 139
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 127 (49.8 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 27/96 (28%), Positives = 53/96 (55%)
Query: 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAXXX 257
I+++++QVE+Y SD NLA L++ + K+ G+V I + SFKK+K +
Sbjct: 78 IRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRDWRLTLYAL 137
Query: 258 XXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVA 293
++G K++R+ P+ +S L +++++A
Sbjct: 138 RFSKLLEVNQEGTKVRRRVPIPDSILNIPPTKLLLA 173
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 144 (55.7 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 39/145 (26%), Positives = 69/145 (47%)
Query: 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLA 254
++ IQK++ Q+EYYFSD NL L++ + ++ GYV + + SFKK+K +
Sbjct: 45 NDLIQKLVAQIEYYFSDENLEKDAFLLKHVRRNKMGYVSVKLLTSFKKVKHLTRDWRTTT 104
Query: 255 XXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIV-------VAE----NLPEDHCHQ 303
+D +K++R+ P+ E L +R++ ++E N E+ C Q
Sbjct: 105 HALKYSDMLELNDDNRKVRRKTPVPVFPSENLPTRMLLVYDIHMISELQGLNKQENGCIQ 164
Query: 304 N-----LMKIFSAVGSVKTIRTCLP 323
L+K F G + ++R P
Sbjct: 165 EKVMEYLLKAFVTFGVISSVRILKP 189
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 143 (55.4 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 40/141 (28%), Positives = 66/141 (46%)
Query: 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIIS---- 248
L +E+ + VL QVE+YFSD NL D L + + + +G V ++ + SF K++ +
Sbjct: 6 LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDS 65
Query: 249 --------SHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTE-SDL-EELQSRIVVAENLPE 298
+ +A +DGKK+ R L + DL E+L +R V A
Sbjct: 66 KGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSY 125
Query: 299 DHCHQNLMKIFSAVGSVKTIR 319
D +++ FS G V ++R
Sbjct: 126 DVKREDVESFFSQYGKVNSVR 146
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 133 (51.9 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 196 ESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAX 255
E IQK++ Q+EYY SD NL L++ + ++ G+V + + SFKK+K + A
Sbjct: 77 ELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRTTAY 136
Query: 256 XXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL 296
++G+K++R++ + E L SR+++ L
Sbjct: 137 ALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSEL 177
Score = 47 (21.6 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 305 LMKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESVELAEKAI 364
L+K F G + ++R P L + + A VE+E VE A KA
Sbjct: 207 LLKAFGNYGPIASVRVLKP--GKDLPADLKKLSGRYSQLGTEEC-AIVEFEEVEAAMKAH 263
Query: 365 AELNDEG 371
+ EG
Sbjct: 264 EAVGGEG 270
>FB|FBgn0033936 [details] [associations]
symbol:CG17386 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
Length = 867
Score = 142 (55.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 35/132 (26%), Positives = 66/132 (50%)
Query: 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL 253
++E ++ + VE+YFS+ ++ L++ + ++ EG+V + V+SFK+++ + +
Sbjct: 278 SEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVV 337
Query: 254 AXXXXXXXXXXXXED-GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCH-QNLMKIFSA 311
D G K++R PL D E + SR +VA +LP D + + +FS
Sbjct: 338 GDAVRRKSRKIELNDVGTKVRRIEPLPSFD-ETMPSRTIVACDLPLDKLTIEKVSDLFSP 396
Query: 312 VGSVKTIRTCLP 323
G + IR P
Sbjct: 397 CGEIALIRILKP 408
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 117 (46.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 181 DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240
+KK++ + + + + + QV+++F D NL L I K +GYV IS + SF
Sbjct: 18 EKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 241 KKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVV 292
K+K + + +A +G +I+R+ PL E +E + + V
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYV 129
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 133 (51.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 42/147 (28%), Positives = 68/147 (46%)
Query: 180 KDKKEK--KDHQHGGLNDESIQK--VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPIS 235
++KKE+ + + G D S + VL QVE+YFSD NL L K+ +G+VPI
Sbjct: 42 EEKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQ 100
Query: 236 TVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAEN 295
T+A+FK+++ + + E G+K++R PL D + + R V +
Sbjct: 101 TIANFKRMRRFQPLEAIVNALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKG 160
Query: 296 LPE--DHCHQNLMKIFSA-VGSVKTIR 319
+ D L K F G + +R
Sbjct: 161 FGDEKDDTQIALEKFFEENAGPISAVR 187
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 181 DKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240
+KK++ + + + + + QV+++F D NL L I K +GYV IS + SF
Sbjct: 18 EKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 241 KKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTE 280
K+K + + +A +G +I+R+ PL E
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGE 117
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 130 (50.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 180 KDKKEKKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVAS 239
KD + GG + + ++ QVEYYF D NL L I K+ +G+VP+S + +
Sbjct: 34 KDPAPAAEEAAGGFTKQE-RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVT 92
Query: 240 FKKIKAIISSHSHL--AXXXXXXXXXXXXEDGKKIKR--QNPLTESDLE---ELQSRIVV 292
FK++ ++ + S + A ED ++R + P+ E + E E+Q R
Sbjct: 93 FKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAY 152
Query: 293 AENLPED 299
A+ P D
Sbjct: 153 AKGFPLD 159
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 131 (51.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 49/193 (25%), Positives = 82/193 (42%)
Query: 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL 253
ND+ Q++ Q+E Y SD NL+ L++ + ++ GYV + + SFKKI+ +
Sbjct: 58 NDDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRTT 117
Query: 254 AXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENL-----P-----EDHCHQ 303
E G K++R+ P+ + L S++++A N P E +
Sbjct: 118 LAAARTSLQLEVNEMGTKVRRRTPVPDWLLCIPTSKLLLAWNFLDGAGPVKEKFESPGVE 177
Query: 304 NL------MKIFSAVGSVKTIRTCLPQTXXXXXXXXXXXXXXXXMLFSNKLHAFVEYESV 357
L M++FS G++ ++R P + K+ A VEYE +
Sbjct: 178 QLGIMEAAMRVFSPYGTISSLRILRP---GKEIPAELKRYTKKHLELGRKVCAVVEYEYL 234
Query: 358 ELAEKAIAELNDE 370
E A KA L E
Sbjct: 235 EGARKAFEALKVE 247
Score = 120 (47.3 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 35/130 (26%), Positives = 61/130 (46%)
Query: 170 DQQEGEVPGVKDKKEKKDHQHGGL----NDESIQKVLNQVEYYFSDLNLATTDHLIRFIL 225
D +G + D E+ D G L ND+ Q++ Q+E Y SD NL+ L++ +
Sbjct: 31 DSLDGSSTDLTDVFEE-DFCEGELWIPPNDDVTQQIATQLENYLSDENLSDDAFLLKHVQ 89
Query: 226 KDPEGYVPISTVASFKKIKAIISSHSHLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEE 285
++ GYV + + SFKKI+ + E G K++R+ P+ + L
Sbjct: 90 RNKMGYVSLKLLTSFKKIRDLTRDWRTTLAAARTSLQLEVNEMGTKVRRRTPVPDWLLCI 149
Query: 286 LQSRIVVAEN 295
S++++A N
Sbjct: 150 PTSKLLLAWN 159
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 38/137 (27%), Positives = 62/137 (45%)
Query: 196 ESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAX 255
E + + L QVE+YFS+ N D +R + +G+VPIST+A+F ++K +
Sbjct: 28 EVLDRCLKQVEFYFSEFNFPY-DRFLRTTAEKNDGWVPISTIATFNRMKKY-RPVDKVIE 85
Query: 256 XXXXXXXXXXXEDGKKIKRQNPLT-----ESDLEELQSRIVVAENLP-ED-------HCH 302
DG+ +KR+ PL + +E+ Q + V N P ED
Sbjct: 86 ALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVM-NFPHEDVEASQIPELQ 144
Query: 303 QNLMKIFSAVGSVKTIR 319
+NL F +G + +R
Sbjct: 145 ENLEAFFKKLGEINQVR 161
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 99 (39.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTE 280
ED KI+R PL E
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPE 99
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 134
Query: 313 GSVKTIR 319
G V I+
Sbjct: 135 GQVLNIQ 141
>TAIR|locus:2017809 [details] [associations]
symbol:La2 "La protein 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0009410 "response to xenobiotic stimulus"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 UniGene:At.27554 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 EMBL:BT026473
IPI:IPI00529259 RefSeq:NP_178106.2 UniGene:At.34029
ProteinModelPortal:Q0V7U7 SMR:Q0V7U7 STRING:Q0V7U7 PaxDb:Q0V7U7
PRIDE:Q0V7U7 EnsemblPlants:AT1G79880.1 GeneID:844327
KEGG:ath:AT1G79880 TAIR:At1g79880 HOGENOM:HOG000239251
InParanoid:Q0V7U7 OMA:INGEMER PhylomeDB:Q0V7U7
ProtClustDB:CLSN2680670 Genevestigator:Q0V7U7 Uniprot:Q0V7U7
Length = 399
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 35/140 (25%), Positives = 64/140 (45%)
Query: 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHS-- 251
N+E+ +K+L QVE+YFSD NL T L R + K +G V + V SF +++ ++ +
Sbjct: 6 NEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNIN 65
Query: 252 ----------HLAXXXXXXXXXXXXEDGKKIKRQNPLTESD--LEELQSRIVVAENLPED 299
+A +G++I R L++ + LE++ R + A
Sbjct: 66 REDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEYS 125
Query: 300 HCHQNLMKIFSAVGSVKTIR 319
+++ FS V ++R
Sbjct: 126 IKMEDVSSFFSQYAKVNSVR 145
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 112 (44.5 bits), Expect = 0.00046, P = 0.00046
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLAXXXX 258
+KV Q+EYYF D NL D ++ L+ +G+VP+ T+ F ++K++ S S +
Sbjct: 12 KKVAEQIEYYFGDHNLPR-DKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVIVESLL 70
Query: 259 XXXXXXX--XEDGKKIKRQ--NPLTESDLE 284
ED KI+R PL E++ E
Sbjct: 71 KSKTGLLEISEDKTKIRRDPNKPLPENNEE 100
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 31/107 (28%), Positives = 51/107 (47%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIIEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPED 299
ED KI+R PL E E +L++R V + P D
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTD 121
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 111 (44.1 bits), Expect = 0.00061, P = 0.00061
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWLEDK 134
Query: 313 GSVKTIR 319
G V I+
Sbjct: 135 GQVLNIQ 141
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 116 (45.9 bits), Expect = 0.00063, P = 0.00063
Identities = 29/106 (27%), Positives = 58/106 (54%)
Query: 193 LNDESIQK-VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHS 251
+ D+++++ V Q+EYYFS+ NL D +R + PEGY+P++ +ASF +++++ +S
Sbjct: 574 VTDDTLKEYVRKQIEYYFSEENLQK-DFFLRRKM-GPEGYLPVALIASFPRVRSLTEDYS 631
Query: 252 HLAXXXXXXXXXXXXEDGKKIKRQNPLTESDLEELQSRIVVAENLP 297
+ DG +I+ P+ + + L + A++LP
Sbjct: 632 LILEALKDSTKVDMSPDGLQIRA--PVNPT-IWPLMPTVSGADSLP 674
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 110 (43.8 bits), Expect = 0.00066, P = 0.00066
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 134
Query: 313 GSVKTIR 319
G V I+
Sbjct: 135 GQVLNIQ 141
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 110 (43.8 bits), Expect = 0.00080, P = 0.00080
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 134
Query: 313 GSVKTIR 319
G V I+
Sbjct: 135 GQVLNIQ 141
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 110 (43.8 bits), Expect = 0.00081, P = 0.00081
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ + F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
ED KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK 134
Query: 313 GSVKTIR 319
G V I+
Sbjct: 135 GQVLNIQ 141
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 109 (43.4 bits), Expect = 0.00096, P = 0.00096
Identities = 32/127 (25%), Positives = 58/127 (45%)
Query: 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHL--AXXX 257
K+ +Q+EYYF D NL D ++ +K EG+VP+ T+ F ++ + + + + A
Sbjct: 16 KICHQIEYYFGDFNLPR-DKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSK 74
Query: 258 XXXXXXXXXEDGKKIKRQ--NPLTESDLE---ELQSRIVVAENLPEDHCHQNLMKIFSAV 312
D KI+R PL E E ++++R V + P D ++ +
Sbjct: 75 SKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDK 134
Query: 313 GSVKTIR 319
G + I+
Sbjct: 135 GQILNIQ 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 387 214 0.00085 112 3 11 23 0.44 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 571 (61 KB)
Total size of DFA: 156 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.53u 0.22s 17.75t Elapsed: 00:00:01
Total cpu time: 17.54u 0.22s 17.76t Elapsed: 00:00:01
Start: Sat May 11 13:30:35 2013 End: Sat May 11 13:30:36 2013