Query 016538
Match_columns 387
No_of_seqs 235 out of 1936
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.2E-48 2.7E-53 386.8 17.9 233 149-385 84-324 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 2.5E-27 5.3E-32 190.4 5.8 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 4.5E-27 9.8E-32 187.0 4.9 76 199-274 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 1.9E-26 4.2E-31 181.7 4.4 75 198-274 1-75 (75)
5 cd08036 LARP_5 La RNA-binding 99.9 3.3E-26 7.1E-31 179.4 4.6 74 199-274 2-75 (75)
6 cd08029 LA_like_fungal La-moti 99.9 3.4E-26 7.3E-31 181.7 4.6 75 199-274 2-76 (76)
7 smart00715 LA Domain in the RN 99.9 3.9E-26 8.4E-31 183.2 4.8 80 195-275 1-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 6.3E-26 1.4E-30 182.4 5.2 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 1.2E-25 2.6E-30 183.4 4.8 77 198-274 2-90 (90)
10 cd08031 LARP_4_5_like La RNA-b 99.9 4.1E-25 8.9E-30 174.9 4.4 74 199-274 2-75 (75)
11 cd08037 LARP_1 La RNA-binding 99.9 3.2E-24 7E-29 168.5 4.5 72 199-274 2-73 (73)
12 cd08038 LARP_2 La RNA-binding 99.9 4.8E-24 1E-28 167.5 4.9 72 199-274 2-73 (73)
13 cd07323 LAM LA motif RNA-bindi 99.9 5.7E-24 1.2E-28 168.7 4.8 74 199-274 2-75 (75)
14 cd08034 LARP_1_2 La RNA-bindin 99.9 6.1E-24 1.3E-28 167.3 4.4 72 199-274 2-73 (73)
15 KOG2591 c-Mpl binding protein, 99.9 1.3E-22 2.7E-27 207.0 9.6 157 189-381 88-248 (684)
16 KOG4213 RNA-binding protein La 99.9 1.1E-21 2.3E-26 176.5 8.0 154 194-367 10-170 (205)
17 PF05383 La: La domain; Inter 99.8 1.2E-21 2.6E-26 149.6 2.1 60 201-260 1-61 (61)
18 PLN03134 glycine-rich RNA-bind 99.5 2.9E-14 6.4E-19 126.4 9.8 82 287-385 33-114 (144)
19 TIGR01659 sex-lethal sex-letha 99.5 7.7E-14 1.7E-18 140.1 13.1 83 286-385 191-275 (346)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.3E-13 2.8E-18 136.5 9.8 82 288-386 269-350 (352)
21 COG5193 LHP1 La protein, small 99.5 2.3E-14 5E-19 142.7 4.0 165 184-365 43-244 (438)
22 PF00076 RRM_1: RNA recognitio 99.4 2E-13 4.3E-18 103.4 7.1 70 291-378 1-70 (70)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 5E-13 1.1E-17 132.3 9.3 79 288-383 3-81 (352)
24 TIGR01659 sex-lethal sex-letha 99.4 7E-13 1.5E-17 133.2 9.6 81 286-383 105-185 (346)
25 TIGR01645 half-pint poly-U bin 99.4 1.4E-12 3.1E-17 138.7 12.5 119 249-384 158-283 (612)
26 TIGR01628 PABP-1234 polyadenyl 99.3 4E-12 8.7E-17 134.4 11.6 81 287-385 284-364 (562)
27 PLN03120 nucleic acid binding 99.3 3.5E-12 7.7E-17 122.6 9.7 76 287-383 3-78 (260)
28 KOG0121 Nuclear cap-binding pr 99.3 7.1E-12 1.5E-16 108.3 7.9 82 285-383 33-114 (153)
29 KOG0107 Alternative splicing f 99.3 6.7E-12 1.4E-16 113.5 7.4 75 288-384 10-84 (195)
30 PF14259 RRM_6: RNA recognitio 99.3 8.7E-12 1.9E-16 95.6 7.1 69 291-377 1-69 (70)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.3 3E-11 6.4E-16 125.7 11.9 79 288-383 295-373 (509)
32 KOG0114 Predicted RNA-binding 99.3 2.5E-11 5.4E-16 101.5 8.8 77 287-383 17-93 (124)
33 TIGR01648 hnRNP-R-Q heterogene 99.2 2.6E-11 5.7E-16 128.7 10.7 73 287-384 232-306 (578)
34 KOG0122 Translation initiation 99.2 1.9E-11 4E-16 115.5 8.3 79 287-382 188-266 (270)
35 smart00362 RRM_2 RNA recogniti 99.2 4E-11 8.7E-16 89.1 8.3 71 290-379 1-71 (72)
36 TIGR01645 half-pint poly-U bin 99.2 1.6E-11 3.5E-16 130.7 8.5 79 287-382 106-184 (612)
37 TIGR01622 SF-CC1 splicing fact 99.2 5.1E-11 1.1E-15 122.5 10.6 79 288-383 186-264 (457)
38 KOG0117 Heterogeneous nuclear 99.2 8.2E-11 1.8E-15 118.9 11.3 140 219-383 180-329 (506)
39 TIGR01622 SF-CC1 splicing fact 99.2 5E-11 1.1E-15 122.5 9.9 80 285-382 86-165 (457)
40 PLN03121 nucleic acid binding 99.2 7.9E-11 1.7E-15 111.9 9.4 76 287-383 4-79 (243)
41 KOG0113 U1 small nuclear ribon 99.2 6E-11 1.3E-15 114.8 8.7 82 287-385 100-181 (335)
42 TIGR01628 PABP-1234 polyadenyl 99.2 8.1E-11 1.8E-15 124.5 10.3 81 286-384 176-260 (562)
43 TIGR01648 hnRNP-R-Q heterogene 99.2 1E-10 2.2E-15 124.3 10.5 77 286-380 56-133 (578)
44 smart00360 RRM RNA recognition 99.2 1.3E-10 2.8E-15 85.9 8.1 70 293-379 1-70 (71)
45 KOG0117 Heterogeneous nuclear 99.1 2.2E-10 4.8E-15 115.8 11.2 80 285-381 80-160 (506)
46 COG0724 RNA-binding proteins ( 99.1 1.6E-10 3.4E-15 105.9 9.0 78 288-382 115-192 (306)
47 KOG0130 RNA-binding protein RB 99.1 1E-10 2.2E-15 102.0 7.1 84 286-386 70-153 (170)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.4E-10 3.1E-15 121.1 9.5 74 288-384 2-77 (481)
49 KOG0125 Ataxin 2-binding prote 99.1 9.5E-11 2.1E-15 114.6 6.9 79 287-384 95-173 (376)
50 cd00590 RRM RRM (RNA recogniti 99.1 5E-10 1.1E-14 83.5 9.1 73 290-380 1-73 (74)
51 PLN03213 repressor of silencin 99.1 1.8E-10 4E-15 117.5 8.8 77 286-383 8-86 (759)
52 KOG0145 RNA-binding protein EL 99.1 1.5E-10 3.2E-15 110.4 7.3 115 250-385 93-209 (360)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.6E-10 5.6E-15 119.1 9.8 75 287-383 274-349 (481)
54 KOG0108 mRNA cleavage and poly 99.1 1.7E-10 3.6E-15 118.7 8.1 79 289-384 19-97 (435)
55 KOG0149 Predicted RNA-binding 99.1 2.1E-10 4.6E-15 108.0 6.6 78 287-382 11-88 (247)
56 KOG0148 Apoptosis-promoting RN 99.0 6.1E-10 1.3E-14 106.7 7.6 75 285-384 161-235 (321)
57 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.7E-14 80.7 7.4 56 305-382 1-56 (56)
58 KOG0144 RNA-binding protein CU 99.0 6.2E-10 1.3E-14 112.2 7.0 80 287-384 123-205 (510)
59 KOG4207 Predicted splicing fac 99.0 4.9E-10 1.1E-14 103.8 5.7 79 288-383 13-91 (256)
60 KOG0131 Splicing factor 3b, su 99.0 6.7E-10 1.5E-14 101.2 6.4 82 287-385 8-89 (203)
61 KOG0111 Cyclophilin-type pepti 99.0 2.4E-10 5.3E-15 106.7 3.6 82 286-384 8-89 (298)
62 KOG0145 RNA-binding protein EL 99.0 1.3E-09 2.9E-14 104.0 7.3 81 287-384 40-120 (360)
63 smart00361 RRM_1 RNA recogniti 98.9 2.7E-09 5.9E-14 82.9 7.0 64 302-380 2-70 (70)
64 KOG0105 Alternative splicing f 98.9 1.6E-09 3.4E-14 99.1 6.1 79 286-384 4-82 (241)
65 KOG0127 Nucleolar protein fibr 98.9 2.1E-09 4.6E-14 111.0 7.6 81 288-385 292-378 (678)
66 KOG0148 Apoptosis-promoting RN 98.9 1.8E-09 4E-14 103.5 6.5 75 290-381 64-138 (321)
67 KOG0126 Predicted RNA-binding 98.9 1.9E-10 4.2E-15 104.7 -1.2 81 286-383 33-113 (219)
68 KOG0123 Polyadenylate-binding 98.9 7.5E-09 1.6E-13 105.0 10.0 108 249-385 46-153 (369)
69 KOG0144 RNA-binding protein CU 98.8 6.4E-09 1.4E-13 105.0 8.0 82 284-382 30-114 (510)
70 KOG4212 RNA-binding protein hn 98.8 7.4E-09 1.6E-13 104.7 8.2 77 286-380 42-119 (608)
71 TIGR01642 U2AF_lg U2 snRNP aux 98.8 6.7E-09 1.5E-13 108.1 7.3 72 285-380 172-255 (509)
72 KOG0132 RNA polymerase II C-te 98.8 1.1E-08 2.3E-13 109.3 7.0 80 285-387 418-497 (894)
73 KOG0127 Nucleolar protein fibr 98.7 1.8E-08 3.8E-13 104.3 7.5 163 202-384 19-195 (678)
74 KOG0153 Predicted RNA-binding 98.7 4.1E-08 8.9E-13 97.0 9.5 149 194-386 142-302 (377)
75 KOG2590 RNA-binding protein LA 98.7 1E-08 2.2E-13 105.5 5.3 65 197-268 300-364 (448)
76 KOG0109 RNA-binding protein LA 98.7 1.7E-08 3.6E-13 97.8 5.6 73 287-384 77-149 (346)
77 KOG0124 Polypyrimidine tract-b 98.7 1.5E-08 3.3E-13 100.5 5.1 79 288-383 113-191 (544)
78 KOG4208 Nucleolar RNA-binding 98.7 6.7E-08 1.5E-12 89.7 7.8 80 287-383 48-128 (214)
79 KOG1924 RhoA GTPase effector D 98.6 1.7E-07 3.7E-12 100.4 9.6 25 91-115 583-609 (1102)
80 COG5193 LHP1 La protein, small 98.6 1.7E-08 3.7E-13 101.3 1.3 61 198-260 271-331 (438)
81 KOG4206 Spliceosomal protein s 98.6 1.7E-07 3.6E-12 88.1 7.7 77 288-384 9-89 (221)
82 KOG0147 Transcriptional coacti 98.6 8.9E-08 1.9E-12 99.3 6.4 76 291-383 281-356 (549)
83 KOG4205 RNA-binding protein mu 98.5 5.5E-08 1.2E-12 96.4 3.3 148 205-386 23-177 (311)
84 KOG0124 Polypyrimidine tract-b 98.5 3.3E-07 7.1E-12 91.3 8.5 79 286-381 208-286 (544)
85 KOG0415 Predicted peptidyl pro 98.5 1.7E-07 3.6E-12 93.0 6.1 79 287-382 238-316 (479)
86 KOG0131 Splicing factor 3b, su 98.5 2.4E-07 5.3E-12 84.6 6.7 82 288-386 96-178 (203)
87 KOG4212 RNA-binding protein hn 98.5 2E-07 4.3E-12 94.5 6.6 75 286-382 534-608 (608)
88 KOG0146 RNA-binding protein ET 98.5 1.5E-07 3.2E-12 90.5 4.9 85 284-385 281-365 (371)
89 KOG0110 RNA-binding protein (R 98.5 3.5E-07 7.6E-12 97.3 7.7 80 290-383 517-596 (725)
90 KOG0109 RNA-binding protein LA 98.4 3.4E-07 7.3E-12 88.9 5.0 71 290-385 4-74 (346)
91 KOG0123 Polyadenylate-binding 98.4 8.9E-07 1.9E-11 90.0 7.5 138 224-384 108-245 (369)
92 KOG4209 Splicing factor RNPS1, 98.3 9E-07 2E-11 84.6 6.1 85 283-385 96-180 (231)
93 KOG1924 RhoA GTPase effector D 98.3 2.4E-06 5.1E-11 91.9 9.7 18 84-101 589-606 (1102)
94 KOG0110 RNA-binding protein (R 98.3 1.4E-06 3.1E-11 92.8 7.9 75 288-379 613-687 (725)
95 KOG4660 Protein Mei2, essentia 98.3 4.7E-07 1E-11 94.2 3.7 72 285-378 72-143 (549)
96 KOG0533 RRM motif-containing p 98.2 7.1E-06 1.5E-10 78.8 8.5 79 288-384 83-161 (243)
97 KOG0116 RasGAP SH3 binding pro 98.1 6.3E-06 1.4E-10 84.8 6.6 76 288-381 288-363 (419)
98 KOG4661 Hsp27-ERE-TATA-binding 98.1 7.3E-06 1.6E-10 85.6 6.9 79 287-382 404-482 (940)
99 KOG1548 Transcription elongati 98.0 1.2E-05 2.7E-10 79.7 7.8 92 282-383 128-219 (382)
100 KOG4454 RNA binding protein (R 98.0 2.8E-06 6E-11 79.9 3.1 79 287-384 8-86 (267)
101 KOG0106 Alternative splicing f 98.0 3.6E-06 7.9E-11 79.4 3.5 69 290-385 3-71 (216)
102 KOG0146 RNA-binding protein ET 98.0 1.3E-05 2.7E-10 77.4 6.0 80 286-383 17-99 (371)
103 PF08777 RRM_3: RNA binding mo 97.9 3.6E-05 7.8E-10 65.0 7.4 72 289-383 2-78 (105)
104 KOG4205 RNA-binding protein mu 97.8 1.9E-05 4.2E-10 78.5 4.4 63 287-366 5-67 (311)
105 PF11608 Limkain-b1: Limkain b 97.8 0.00013 2.7E-09 59.4 7.7 67 289-382 3-74 (90)
106 KOG1190 Polypyrimidine tract-b 97.7 8.5E-05 1.8E-09 75.3 7.9 73 288-382 297-370 (492)
107 KOG4206 Spliceosomal protein s 97.7 5.7E-05 1.2E-09 71.2 6.2 163 198-382 23-219 (221)
108 KOG0147 Transcriptional coacti 97.7 2.2E-05 4.8E-10 81.8 3.4 81 283-381 174-254 (549)
109 KOG0151 Predicted splicing reg 97.7 4.8E-05 1E-09 81.4 5.3 81 285-379 171-251 (877)
110 KOG0226 RNA-binding proteins [ 97.6 5.9E-05 1.3E-09 72.4 4.5 78 286-380 188-265 (290)
111 PF04059 RRM_2: RNA recognitio 97.5 0.00049 1.1E-08 57.5 8.4 66 289-371 2-69 (97)
112 KOG1457 RNA binding protein (c 97.5 0.00032 6.9E-09 66.4 8.0 81 287-383 33-116 (284)
113 KOG4211 Splicing factor hnRNP- 97.5 0.00019 4.2E-09 74.1 6.6 71 288-379 10-80 (510)
114 KOG1995 Conserved Zn-finger pr 97.5 0.00016 3.5E-09 72.3 5.4 91 286-385 64-154 (351)
115 KOG0106 Alternative splicing f 97.4 7.5E-05 1.6E-09 70.6 2.5 72 286-382 97-168 (216)
116 KOG1548 Transcription elongati 97.4 0.00075 1.6E-08 67.3 8.6 78 286-384 263-351 (382)
117 KOG4211 Splicing factor hnRNP- 97.3 0.00065 1.4E-08 70.4 7.6 74 287-379 102-176 (510)
118 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00072 1.6E-08 50.2 5.5 52 289-364 2-53 (53)
119 KOG1457 RNA binding protein (c 97.2 0.00043 9.4E-09 65.5 4.7 71 288-379 210-283 (284)
120 COG5175 MOT2 Transcriptional r 97.2 0.0011 2.3E-08 66.1 7.2 80 286-381 112-199 (480)
121 KOG4307 RNA binding protein RB 96.9 0.0018 4E-08 69.5 6.9 75 289-381 868-943 (944)
122 KOG2314 Translation initiation 96.8 0.0027 5.9E-08 66.9 6.9 77 288-382 58-141 (698)
123 KOG0120 Splicing factor U2AF, 96.6 0.0015 3.4E-08 68.6 3.6 80 287-383 288-367 (500)
124 KOG3152 TBP-binding protein, a 96.3 0.0031 6.8E-08 60.8 3.3 83 288-375 74-156 (278)
125 KOG1456 Heterogeneous nuclear 95.9 0.03 6.6E-07 56.7 8.1 73 288-382 287-360 (494)
126 KOG0120 Splicing factor U2AF, 95.8 0.023 5.1E-07 59.9 7.3 64 303-380 424-487 (500)
127 KOG0129 Predicted RNA-binding 95.8 0.028 6.1E-07 58.9 7.8 69 286-369 257-328 (520)
128 KOG0105 Alternative splicing f 95.8 0.038 8.3E-07 51.3 7.6 67 288-378 115-181 (241)
129 PF08952 DUF1866: Domain of un 95.6 0.028 6E-07 50.3 5.9 72 287-384 26-106 (146)
130 PF07145 PAM2: Ataxin-2 C-term 95.5 0.0083 1.8E-07 35.0 1.5 16 36-51 2-17 (18)
131 KOG2202 U2 snRNP splicing fact 95.5 0.0071 1.5E-07 58.3 1.8 61 303-381 83-144 (260)
132 KOG4210 Nuclear localization s 95.4 0.014 3E-07 57.6 3.8 74 288-379 184-258 (285)
133 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.054 1.2E-06 45.5 6.4 83 286-381 4-86 (100)
134 KOG3671 Actin regulatory prote 95.2 0.13 2.8E-06 53.9 9.9 6 103-108 443-448 (569)
135 KOG0128 RNA-binding protein SA 94.7 0.013 2.7E-07 64.5 1.3 76 288-381 736-811 (881)
136 PF15023 DUF4523: Protein of u 94.7 0.13 2.9E-06 46.0 7.3 61 286-370 84-148 (166)
137 PF09421 FRQ: Frequency clock 94.7 0.021 4.6E-07 64.0 2.9 53 224-276 471-524 (989)
138 KOG1996 mRNA splicing factor [ 94.6 0.083 1.8E-06 52.2 6.4 65 302-382 300-364 (378)
139 KOG2068 MOT2 transcription fac 94.4 0.018 3.9E-07 57.5 1.5 82 286-381 75-159 (327)
140 KOG0115 RNA-binding protein p5 94.2 0.056 1.2E-06 52.3 4.3 66 289-372 32-97 (275)
141 KOG0112 Large RNA-binding prot 94.2 0.014 3.1E-07 64.4 0.2 80 285-382 369-448 (975)
142 KOG4307 RNA binding protein RB 93.8 4.4 9.5E-05 44.6 17.8 78 288-383 434-512 (944)
143 KOG1190 Polypyrimidine tract-b 93.8 0.14 3E-06 52.6 6.3 75 287-382 413-488 (492)
144 KOG4676 Splicing factor, argin 93.7 0.081 1.8E-06 54.0 4.5 80 289-383 8-87 (479)
145 KOG0129 Predicted RNA-binding 93.7 0.15 3.3E-06 53.6 6.6 63 287-366 369-432 (520)
146 KOG1365 RNA-binding protein Fu 93.4 0.21 4.6E-06 51.0 6.8 60 288-366 161-225 (508)
147 PF10309 DUF2414: Protein of u 93.3 0.32 7E-06 37.4 6.3 54 288-367 5-62 (62)
148 KOG1365 RNA-binding protein Fu 92.7 0.12 2.6E-06 52.7 4.1 73 288-378 280-355 (508)
149 PF08675 RNA_bind: RNA binding 92.3 0.46 9.9E-06 38.8 6.2 55 290-369 10-64 (87)
150 KOG0128 RNA-binding protein SA 91.8 0.021 4.5E-07 62.9 -2.8 77 286-381 665-741 (881)
151 KOG1456 Heterogeneous nuclear 91.3 0.62 1.3E-05 47.6 7.1 73 289-383 121-197 (494)
152 KOG4849 mRNA cleavage factor I 90.7 0.28 6.1E-06 49.5 4.1 76 288-380 80-157 (498)
153 KOG4574 RNA-binding protein (c 90.5 0.18 3.8E-06 55.9 2.7 69 291-382 301-371 (1007)
154 KOG0112 Large RNA-binding prot 90.5 0.36 7.9E-06 53.8 5.0 76 286-384 453-530 (975)
155 PF07576 BRAP2: BRCA1-associat 90.1 2.2 4.7E-05 36.5 8.5 64 291-373 16-80 (110)
156 KOG2416 Acinus (induces apopto 89.3 0.19 4.1E-06 53.8 1.7 64 286-373 442-506 (718)
157 KOG1819 FYVE finger-containing 89.1 0.2 4.4E-06 52.6 1.7 14 154-167 594-607 (990)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 88.9 0.43 9.2E-06 43.9 3.5 72 286-372 5-80 (176)
159 KOG1923 Rac1 GTPase effector F 88.4 1.5 3.4E-05 48.3 7.8 11 290-300 530-540 (830)
160 KOG2318 Uncharacterized conser 87.6 1.6 3.4E-05 46.9 7.0 91 287-381 173-302 (650)
161 PF11767 SET_assoc: Histone ly 86.9 1.8 3.8E-05 33.7 5.3 51 299-375 11-61 (66)
162 KOG0804 Cytoplasmic Zn-finger 84.2 2.6 5.5E-05 44.1 6.5 68 288-374 74-142 (493)
163 KOG1923 Rac1 GTPase effector F 84.1 4.7 0.0001 44.7 8.7 15 192-206 388-402 (830)
164 PF04847 Calcipressin: Calcipr 83.1 1.9 4.1E-05 40.1 4.7 59 301-382 8-68 (184)
165 KOG2135 Proteins containing th 82.5 0.79 1.7E-05 48.0 2.1 74 286-383 370-444 (526)
166 KOG4660 Protein Mei2, essentia 79.0 3.3 7.2E-05 44.2 5.3 30 345-375 429-458 (549)
167 KOG2193 IGF-II mRNA-binding pr 78.6 2.6 5.6E-05 43.8 4.2 58 290-370 3-60 (584)
168 PF01885 PTS_2-RNA: RNA 2'-pho 78.0 1.5 3.2E-05 40.8 2.2 52 225-276 26-82 (186)
169 KOG1819 FYVE finger-containing 77.4 0.97 2.1E-05 47.7 0.8 19 146-164 583-601 (990)
170 KOG4210 Nuclear localization s 77.2 1.5 3.3E-05 43.4 2.1 81 287-384 87-167 (285)
171 PF03880 DbpA: DbpA RNA bindin 76.9 10 0.00022 29.5 6.4 58 299-382 12-74 (74)
172 KOG2278 RNA:NAD 2'-phosphotran 75.1 2 4.4E-05 39.7 2.1 39 224-262 27-65 (207)
173 PRK00819 RNA 2'-phosphotransfe 71.5 2.9 6.3E-05 38.7 2.4 51 224-276 26-78 (179)
174 KOG4672 Uncharacterized conser 71.3 32 0.0007 35.9 9.8 6 301-306 471-476 (487)
175 KOG4849 mRNA cleavage factor I 70.7 30 0.00065 35.4 9.3 7 42-48 241-247 (498)
176 KOG4285 Mitotic phosphoprotein 70.7 11 0.00023 37.9 6.1 62 288-374 197-258 (350)
177 KOG4676 Splicing factor, argin 70.4 1.1 2.4E-05 45.9 -0.7 60 288-368 151-210 (479)
178 KOG2253 U1 snRNP complex, subu 60.0 6.2 0.00013 43.1 2.4 68 287-380 39-106 (668)
179 COG5178 PRP8 U5 snRNP spliceos 59.3 7 0.00015 45.4 2.7 22 111-132 76-97 (2365)
180 PTZ00315 2'-phosphotransferase 52.2 11 0.00025 40.9 2.9 53 224-276 398-456 (582)
181 KOG1925 Rac1 GTPase effector F 51.7 18 0.00039 38.7 4.1 12 41-52 195-206 (817)
182 PF03276 Gag_spuma: Spumavirus 51.6 70 0.0015 34.6 8.4 10 304-313 418-427 (582)
183 PF10567 Nab6_mRNP_bdg: RNA-re 51.1 38 0.00083 33.8 6.0 70 285-364 12-81 (309)
184 KOG2891 Surface glycoprotein [ 50.0 4.8 0.0001 39.8 -0.3 33 288-320 149-193 (445)
185 KOG2675 Adenylate cyclase-asso 50.0 13 0.00028 39.0 2.7 16 204-219 335-350 (480)
186 KOG0132 RNA polymerase II C-te 47.4 94 0.002 35.1 8.8 8 42-49 611-618 (894)
187 PF03276 Gag_spuma: Spumavirus 46.6 82 0.0018 34.1 8.0 12 194-205 302-313 (582)
188 PF03468 XS: XS domain; Inter 39.5 65 0.0014 27.6 5.1 48 290-357 10-66 (116)
189 cd04904 ACT_AAAH ACT domain of 37.3 1.9E+02 0.0041 22.2 7.0 53 301-370 13-66 (74)
190 KOG4483 Uncharacterized conser 36.4 75 0.0016 33.2 5.7 54 289-365 392-445 (528)
191 PF07292 NID: Nmi/IFP 35 domai 36.2 19 0.0004 29.7 1.1 24 285-308 49-72 (88)
192 COG0724 RNA-binding proteins ( 36.1 61 0.0013 29.1 4.7 36 286-321 223-258 (306)
193 PF08544 GHMP_kinases_C: GHMP 35.6 1.5E+02 0.0032 22.6 6.2 46 302-369 36-81 (85)
194 KOG4410 5-formyltetrahydrofola 33.6 67 0.0014 32.2 4.6 58 289-368 331-395 (396)
195 PF00398 RrnaAD: Ribosomal RNA 32.3 28 0.00061 33.5 1.9 110 194-320 15-131 (262)
196 KOG2391 Vacuolar sorting prote 29.6 1.1E+02 0.0025 31.2 5.6 18 193-210 215-232 (365)
197 PF00837 T4_deiodinase: Iodoth 28.8 62 0.0014 31.4 3.5 92 219-312 141-236 (237)
198 KOG0559 Dihydrolipoamide succi 28.8 2.2E+02 0.0048 29.6 7.5 19 293-312 336-354 (457)
199 PF00403 HMA: Heavy-metal-asso 25.8 2.6E+02 0.0056 20.1 7.2 32 290-321 1-32 (62)
200 PF11823 DUF3343: Protein of u 25.0 1.2E+02 0.0025 23.4 3.9 29 349-382 3-31 (73)
201 COG2608 CopZ Copper chaperone 24.3 2.3E+02 0.005 21.7 5.4 45 289-356 4-48 (71)
202 PF14893 PNMA: PNMA 23.9 56 0.0012 33.2 2.4 24 288-311 18-41 (331)
203 PF03439 Spt5-NGN: Early trans 23.7 54 0.0012 26.2 1.8 24 347-370 44-67 (84)
204 KOG0162 Myosin class I heavy c 23.2 1.8E+02 0.0038 33.0 6.0 13 226-238 1092-1104(1106)
205 COG4009 Uncharacterized protei 22.9 1E+02 0.0022 25.2 3.1 24 291-314 51-74 (88)
206 PF15513 DUF4651: Domain of un 22.5 94 0.002 24.0 2.8 19 302-320 8-26 (62)
207 cd04931 ACT_PAH ACT domain of 22.3 3.9E+02 0.0085 21.7 6.7 52 301-369 27-80 (90)
208 KOG1925 Rac1 GTPase effector F 21.9 1.6E+02 0.0035 31.9 5.2 18 252-269 371-388 (817)
209 PRK14548 50S ribosomal protein 21.6 2.8E+02 0.006 22.6 5.6 58 290-367 22-81 (84)
210 KOG3423 Transcription initiati 21.2 2.2E+02 0.0049 26.3 5.4 15 299-313 152-166 (176)
211 PF00036 EF-hand_1: EF hand; 20.7 57 0.0012 20.9 1.1 21 219-239 4-24 (29)
212 KOG4019 Calcineurin-mediated s 20.6 99 0.0021 29.0 3.1 70 290-382 12-87 (193)
213 KOG4365 Uncharacterized conser 20.6 23 0.00051 37.2 -1.1 74 292-383 7-80 (572)
214 KOG2187 tRNA uracil-5-methyltr 20.5 65 0.0014 34.7 2.1 37 347-383 63-99 (534)
215 PRK11901 hypothetical protein; 20.1 1.5E+02 0.0034 30.0 4.5 61 290-370 247-307 (327)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.2e-48 Score=386.80 Aligned_cols=233 Identities=42% Similarity=0.601 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCCcccccc-ccccccCCCCccccccCcccCC-------CCCCChHHHHHHhhcccccccCCCcCCCHHH
Q 016538 149 HRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKEKKDHQ-------HGGLNDESIQKVLNQVEYYFSDLNLATTDHL 220 (387)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~k~~~~~~~-------~~~lt~e~~~kI~kQvEyYFSD~NL~~D~fL 220 (387)
..+++.+|.++|+|..+.+ ...+...+...+....++++.+ ...+++|++.||.+||||||||+||.+|+||
T Consensus 84 n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fL 163 (484)
T KOG1855|consen 84 NSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFL 163 (484)
T ss_pred CCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHH
Confidence 4577889999999999888 6555555555555555555544 6778999999999999999999999999999
Q ss_pred HhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeecccccccCCCCcchhhhhhhceeeeeecCCCcc
Q 016538 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300 (387)
Q Consensus 221 ~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~ 300 (387)
++.|.+|.+|||+|.+|++|||||+||.||.+|+.||+.|.+|+|++||++|||..|+++.+.+++.+|||+|.|||.|.
T Consensus 164 lkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh 243 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDH 243 (484)
T ss_pred HHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 016538 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (387)
Q Consensus 301 T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~ 380 (387)
+.|+|++||+.||.|+.||||.|+ .++.+.|....+..+..++-||||||+..+.|.||.+.|+.+.+|+.||+|+
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhh
Confidence 999999999999999999999884 3466667655555566779999999999999999999999999999999999
Q ss_pred Eeecc
Q 016538 381 LMLRR 385 (387)
Q Consensus 381 L~~~r 385 (387)
|++++
T Consensus 320 Ll~k~ 324 (484)
T KOG1855|consen 320 LLGKK 324 (484)
T ss_pred hhhcc
Confidence 99875
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.94 E-value=2.5e-27 Score=190.40 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=78.0
Q ss_pred hHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
.++.++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.|.+.|++||+.|+.|||++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 57889999999999999999999999999998999999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=4.5e-27 Score=186.97 Aligned_cols=76 Identities=55% Similarity=0.873 Sum_probs=74.6
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.|.+.|.+||+.|+.|||++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.9e-26 Score=181.69 Aligned_cols=75 Identities=33% Similarity=0.482 Sum_probs=71.6
Q ss_pred HHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
+++|++||||||||+||.+|.||+++| +.||||||++|++|+|||+|+.|++.|++||+.|+.|+|++||++||.
T Consensus 1 ~e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 1 RECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred ChHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 478999999999999999999999996 679999999999999999999999999999999999999999999983
No 5
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=3.3e-26 Score=179.41 Aligned_cols=74 Identities=32% Similarity=0.489 Sum_probs=71.0
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
+.|++||||||||+||.+|.||+++| +.||||||.+|++|+|||+|+.|.+.|++||++|..|||++||++||.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 67999999999999999999999997 579999999999999999999999999999999999999999999983
No 6
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=3.4e-26 Score=181.70 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.5
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.+ +.|.+||+.|+.|||++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 589999999999999999999999999899999999999999999999865 999999999999999999999998
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.92 E-value=3.9e-26 Score=183.16 Aligned_cols=80 Identities=49% Similarity=0.745 Sum_probs=77.0
Q ss_pred hHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++++++|++||||||||+||.+|.||+++|.++ +|||+|++|++|+|||+++.|.+.|++||+.|..|||++||++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 368899999999999999999999999999887 9999999999999999999999999999999999999999999998
Q ss_pred C
Q 016538 275 Q 275 (387)
Q Consensus 275 ~ 275 (387)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 4
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.92 E-value=6.3e-26 Score=182.44 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=75.9
Q ss_pred hHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhccc--ceEEeeccccc
Q 016538 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (387)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~--~LeVsedgkkV 272 (387)
+++..+|++||||||||+||.+|.||+++|.++ +|||+|++|++|+|||+++.|.+.|++||+.|+ .|||++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 568899999999999999999999999999765 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 016538 273 KR 274 (387)
Q Consensus 273 RR 274 (387)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=1.2e-25 Score=183.38 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.6
Q ss_pred HHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhcc------------HHHHHHhhhcccceEE
Q 016538 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (387)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d------------~~~I~eALr~S~~LeV 265 (387)
+++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.+ .+.|++||+.|+.|||
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred eeccccccc
Q 016538 266 SEDGKKIKR 274 (387)
Q Consensus 266 sedgkkVRR 274 (387)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=4.1e-25 Score=174.91 Aligned_cols=74 Identities=38% Similarity=0.624 Sum_probs=71.0
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++| +.||||+|++|++|+||++|+.|.+.|++||+.|+.|||++||++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999997 578999999999999999999999999999999999999999999983
No 11
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=3.2e-24 Score=168.50 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.6
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++| +.||||+|++|++|+|||+|+.|.+.|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999997 679999999999999999999999999999999999999977 4654
No 12
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=4.8e-24 Score=167.53 Aligned_cols=72 Identities=31% Similarity=0.568 Sum_probs=67.7
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++|+.|.+.|++||++|..||+++|+ |||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~--~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQK--IRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCc--ccC
Confidence 68999999999999999999999997 6799999999999999999999999999999999999999874 554
No 13
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=5.7e-24 Score=168.74 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.9
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++++.|.+.|++||+.|..|+|++|+++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 58999999999999999999999998 889999999999999999999999999999999999999999999997
No 14
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=6.1e-24 Score=167.34 Aligned_cols=72 Identities=33% Similarity=0.601 Sum_probs=68.0
Q ss_pred HHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccccc
Q 016538 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (387)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR 274 (387)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++++.|.+.|++||+.|..|||++ .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 68999999999999999999999997 67999999999999999999999999999999999999998 45764
No 15
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-22 Score=207.02 Aligned_cols=157 Identities=28% Similarity=0.421 Sum_probs=135.1
Q ss_pred CCCCCChHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeec
Q 016538 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (387)
Q Consensus 189 ~~~~lt~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsed 268 (387)
....++.++++-|++|||||||.+||..|.||+.+| |.|.||+|.+++.|.+|++|+.|+++|+++||.|..|+|+++
T Consensus 88 ~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQM--DSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDek 165 (684)
T KOG2591|consen 88 PSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQM--DSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEK 165 (684)
T ss_pred CCCccchhHHHHHHHHHHHhhccccccchhhhhhhc--ccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccC
Confidence 445677799999999999999999999999999995 789999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHhc--cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCC
Q 016538 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (387)
Q Consensus 269 gkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~--fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~ 346 (387)
|.+||... ++|+|+++-|++.+-+|+++.||+. |-++.+ ++|+.
T Consensus 166 gekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~is------------------------cefa~ 211 (684)
T KOG2591|consen 166 GEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVIS------------------------CEFAH 211 (684)
T ss_pred ccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCcee------------------------eeeee
Confidence 99999643 4678889999999999999999986 333333 34555
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCC--CCCCCceEEEE
Q 016538 347 KLHAFVEYESVELAEKAIAELNDE--GNWRSGLRVRL 381 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~Ln~~--~~~~~gLrV~L 381 (387)
...|||+|++.+||++|++.|..+ .+.++.|..|+
T Consensus 212 N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 212 NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 667999999999999999999875 44555555554
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.85 E-value=1.1e-21 Score=176.47 Aligned_cols=154 Identities=27% Similarity=0.347 Sum_probs=130.2
Q ss_pred ChHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhccc--ceEEeecccc
Q 016538 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (387)
Q Consensus 194 t~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~--~LeVsedgkk 271 (387)
..++.++|+.||||||+|.||++|.||+++|.+..+|||+|.++..|+|+..+++|.+.|++||++|. ++++++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 45677899999999999999999999999998899999999999999999999999999999999886 7899999999
Q ss_pred cccCC--CCcc---hhhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCC
Q 016538 272 IKRQN--PLTE---SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (387)
Q Consensus 272 VRR~~--Pl~e---~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~ 346 (387)
+||.. |+++ ........|++|.+ +.+...++|..+-+ |++.+|.+++-.. +....
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 99885 5654 34566788999988 66777788888777 8999998854221 11234
Q ss_pred ccEEEEEeCCHHHHHHHHHHH
Q 016538 347 KLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~L 367 (387)
+|..||.|.+.+.|..+++.-
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCceEEEeecHHHHHhhhhhh
Confidence 889999999999998877653
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.83 E-value=1.2e-21 Score=149.55 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.2
Q ss_pred HhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhh-ccHHHHHHhhhcc
Q 016538 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (387)
Q Consensus 201 I~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt-~d~~~I~eALr~S 260 (387)
|++||||||||+||.+|.||+++|.+++||||+|++|++|+|||+++ .|.+.|++||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999999899999999999999999999 8999999999986
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.54 E-value=2.9e-14 Score=126.40 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=72.4
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||+.++|+++|+++|++||.|+.|+|..+..++. .||||||+|++.|+|++||+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR-----------------SRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999999999987653321 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.++.|+|.++..+
T Consensus 96 lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 96 MDGKELNGRHIRVNPANDR 114 (144)
T ss_pred cCCCEECCEEEEEEeCCcC
Confidence 9999998999999887654
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=7.7e-14 Score=140.09 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=69.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||.|||.++|+++|+++|++||.|+.|+|.+++.++. .||||||+|++.|+|++||+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~-----------------~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT-----------------PRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3467899999999999999999999999999999976643221 37899999999999999999
Q ss_pred HHcCCCCCC--CceEEEEeecc
Q 016538 366 ELNDEGNWR--SGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~--~gLrV~L~~~r 385 (387)
.||+..+.+ ..|+|+++..+
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HhCCCccCCCceeEEEEECCcc
Confidence 999987655 46777776543
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=1.3e-13 Score=136.49 Aligned_cols=82 Identities=22% Similarity=0.219 Sum_probs=73.7
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+|||.++++++|+++|++||.|++|+|+++..++. .||||||+|++.++|.+|++.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~-----------------skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ-----------------CKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHh
Confidence 34799999999999999999999999999999988753322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccC
Q 016538 368 NDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~rg 386 (387)
||..++++.|+|.+...|+
T Consensus 332 nG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 332 NGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCEECCeEEEEEEccCCC
Confidence 9999999999999987764
No 21
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.3e-14 Score=142.72 Aligned_cols=165 Identities=26% Similarity=0.322 Sum_probs=134.3
Q ss_pred CcccCCCCCCChHHHHH---------------Hhhccccccc-----CCCcCCCHHHHhhhcCC--CCCceecccccchh
Q 016538 184 EKKDHQHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILKD--PEGYVPISTVASFK 241 (387)
Q Consensus 184 ~~~~~~~~~lt~e~~~k---------------I~kQvEyYFS-----D~NL~~D~fL~~~i~k~--~eG~Vpi~~i~sFk 241 (387)
..+....++++++.+.+ +..|+||||| |.|+.+|+||+..-.++ .+|||+|.++++|+
T Consensus 43 s~t~~~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn 122 (438)
T COG5193 43 SNTVIPVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFN 122 (438)
T ss_pred cCCCcchhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeec
Confidence 34555677788888888 9999999999 99999999999865433 59999999999999
Q ss_pred hhHHhhccHHHHHHhhhcc---cceEEeecccccccCCCCcchhhh--hhhceeeeeecCCCcccH--------HHHHHH
Q 016538 242 KIKAIISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCH--------QNLMKI 308 (387)
Q Consensus 242 KmK~Lt~d~~~I~eALr~S---~~LeVsedgkkVRR~~Pl~e~~~~--~~~~rTVyV~nLP~d~T~--------e~L~e~ 308 (387)
+|+.++...+.+..+|++| .+++++.+|..++|..++.....+ ....|.+|+.++....+. ++++..
T Consensus 123 ~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~ 202 (438)
T COG5193 123 RMKNSGSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQ 202 (438)
T ss_pred cccccCCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhh
Confidence 9999999999999999999 689999999999988765543322 455788999999876543 499999
Q ss_pred Hhc--cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 309 FSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 309 Fs~--fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
|.. .|.+..|+++++- +. + .++|..|++|...+.|+++..
T Consensus 203 ~p~h~h~~~~~i~~rrd~----------~n-----k--n~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 203 FPPHYHAPPSQIRNRRDW----------LN-----K--NFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred CCCcccCChhhccchhhh----------hh-----c--cccCcccccccChHHHHHHhc
Confidence 999 7888888887642 11 1 137789999999999998863
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=2e-13 Score=103.40 Aligned_cols=70 Identities=37% Similarity=0.470 Sum_probs=61.0
Q ss_pred eeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 016538 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~ 370 (387)
|||+|||.++|+++|+++|+.||.|..+.+.... . + ..+++|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~----------~-------~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-S----------G-------KSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-T----------S-------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-c----------c-------cccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999987531 0 0 13789999999999999999999999
Q ss_pred CCCCCceE
Q 016538 371 GNWRSGLR 378 (387)
Q Consensus 371 ~~~~~gLr 378 (387)
.++++.||
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 88777665
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.41 E-value=5e-13 Score=132.34 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=70.6
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..+|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|.+.++|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~-----------------s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQ-----------------SLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCc-----------------cceEEEEEECcHHHHHHHHhhc
Confidence 46899999999999999999999999999999987753321 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 016538 368 NDEGNWRSGLRVRLML 383 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~ 383 (387)
|+..+.++.|+|.+..
T Consensus 66 ~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 66 NGLRLQNKTIKVSYAR 81 (352)
T ss_pred ccEEECCeeEEEEeec
Confidence 9999999989987664
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.40 E-value=7e-13 Score=133.19 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=71.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|+.|+|+++..+++ .||||||||+++|+|++||+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~-----------------srGyaFVeF~~~e~A~~Ai~ 167 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY-----------------SFGYAFVDFGSEADSQRAIK 167 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-----------------cCcEEEEEEccHHHHHHHHH
Confidence 3568999999999999999999999999999999987643321 37999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
+|++..+.++.|+|..+.
T Consensus 168 ~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 168 NLNGITVRNKRLKVSYAR 185 (346)
T ss_pred HcCCCccCCceeeeeccc
Confidence 999999999999998654
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.40 E-value=1.4e-12 Score=138.67 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=86.2
Q ss_pred cHHHHHHhhhcccceEEeecccccccCCCCcc------h-hhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEe
Q 016538 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE------S-DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (387)
Q Consensus 249 d~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e------~-~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~ 321 (387)
+.+....||+......+.....+|+|....+. . .......++|||+||+.++++++|+++|+.||.|++++|.
T Consensus 158 s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~ 237 (612)
T TIGR01645 158 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 237 (612)
T ss_pred cHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEE
Confidence 44555666665444444433334443322111 0 0112235789999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 322 LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 322 ~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
++..++ ..||||||+|++.++|.+||+.||+..+.|+.|+|..+..
T Consensus 238 ~D~~tg-----------------ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 238 RAPTGR-----------------GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ecCCCC-----------------CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 764322 1389999999999999999999999999999999986653
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.35 E-value=4e-12 Score=134.42 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=72.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||+.++|+++|+++|+.||.|+.|+++.+.+ + ..||||||+|++.++|++|+++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~-g-----------------~~~g~gfV~f~~~~~A~~A~~~ 345 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK-G-----------------VSRGFGFVCFSNPEEANRAVTE 345 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CcCCeEEEEeCCHHHHHHHHHH
Confidence 457899999999999999999999999999999986521 1 1379999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|.++.++
T Consensus 346 ~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 346 MHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred hcCCeeCCceeEEEeccCc
Confidence 9999999999999998764
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.5e-12 Score=122.57 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=68.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||+.++|+++|+++|+.||+|+.|+|.+++. .+|||||+|++.++|++||.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All- 61 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL- 61 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-
Confidence 357999999999999999999999999999999975531 26799999999999999996
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
||+..++++.|+|....
T Consensus 62 LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 62 LSGATIVDQSVTITPAE 78 (260)
T ss_pred hcCCeeCCceEEEEecc
Confidence 99999999999998865
No 28
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=7.1e-12 Score=108.26 Aligned_cols=82 Identities=23% Similarity=0.211 Sum_probs=72.0
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++||||+||...+|+|.|-++|+++|.|+.|-|-.++. +|+ ..|||||||-+.++|+.|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------kkt------pCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------KKT------PCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------CcC------ccceEEEEEecchhHHHHH
Confidence 35678999999999999999999999999999999876643 222 3799999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 016538 365 AELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~ 383 (387)
+.+|+..+.++.|++.+-.
T Consensus 96 ryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 96 RYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HHhccCcccccceeeeccc
Confidence 9999999999999987643
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.7e-12 Score=113.45 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=67.4
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.+.|||+||+.+++..||+.+|++||.|.+|+|.+. .-|||||||++.-||+.|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 578999999999999999999999999999999541 2689999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 016538 368 NDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~ 384 (387)
++..+.+.-|+|.|-..
T Consensus 68 DG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTG 84 (195)
T ss_pred CCccccCceEEEEeecC
Confidence 99998887788887654
No 30
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=8.7e-12 Score=95.56 Aligned_cols=69 Identities=32% Similarity=0.422 Sum_probs=57.1
Q ss_pred eeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 016538 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~ 370 (387)
|||+|||.++|+++|+++|+.||.|..|++.+.+. + ..+|+|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~-----------------~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-G-----------------QSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-S-----------------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-c-----------------ccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999975432 1 13889999999999999999998877
Q ss_pred CCCCCce
Q 016538 371 GNWRSGL 377 (387)
Q Consensus 371 ~~~~~gL 377 (387)
.+.++.|
T Consensus 63 ~~~g~~l 69 (70)
T PF14259_consen 63 EIDGRKL 69 (70)
T ss_dssp EETTEEE
T ss_pred EECCEEc
Confidence 6655554
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=3e-11 Score=125.71 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=70.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+|||.++|+++|+++|+.||.|..+.++.+..++ ..+|||||+|++.++|++||+.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-----------------~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG-----------------LSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHHHc
Confidence 4789999999999999999999999999999997654322 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 016538 368 NDEGNWRSGLRVRLML 383 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~ 383 (387)
|+..++++.|+|..+.
T Consensus 358 ~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 358 NGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEECCeEEEEEECc
Confidence 9999999999998864
No 32
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=101.47 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=66.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
-.|.|||+|||+++|.|+.-++|++||.|..||+-..+ ..+|.|||.|++..+|.+|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--------------------~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--------------------ETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--------------------CcCceEEEEehHhhhHHHHHHH
Confidence 46899999999999999999999999999999983221 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
|++..+.++-|.|-+..
T Consensus 77 lsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 77 LSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hcccccCCceEEEEecC
Confidence 99998877777776653
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.24 E-value=2.6e-11 Score=128.68 Aligned_cols=73 Identities=30% Similarity=0.349 Sum_probs=66.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhcc--CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~f--G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++|||+||+.++|+++|+++|++| |+|+.|+++ ++||||+|++.|+|++|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHH
Confidence 35789999999999999999999999 999998763 568999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.||+..++++.|+|.++..
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred HHhCCCEECCEEEEEEEccC
Confidence 99999999999999998753
No 34
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.9e-11 Score=115.52 Aligned_cols=79 Identities=32% Similarity=0.379 Sum_probs=69.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
+..||.|.||++++++++|+++|..||.|.+|.|.+++.+|. .||||||.|+++++|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~-----------------~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL-----------------SKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc-----------------ccceEEEEEecHHHHHHHHHH
Confidence 567899999999999999999999999999999998876653 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
|||.....-.|+|...
T Consensus 251 LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWS 266 (270)
T ss_pred ccCcccceEEEEEEec
Confidence 9998765556777654
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=4e-11 Score=89.08 Aligned_cols=71 Identities=38% Similarity=0.496 Sum_probs=61.0
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+|||+|||.+++.++|+++|+.||.|..+++.... + ..+|+|||+|.+.++|++|++.+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~-----------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--G-----------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C-----------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999986432 0 1378999999999999999999998
Q ss_pred CCCCCCceEE
Q 016538 370 EGNWRSGLRV 379 (387)
Q Consensus 370 ~~~~~~gLrV 379 (387)
..+.+..|+|
T Consensus 62 ~~~~~~~i~v 71 (72)
T smart00362 62 TKLGGRPLRV 71 (72)
T ss_pred cEECCEEEee
Confidence 8776666655
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=1.6e-11 Score=130.74 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=70.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||++++|+++|+++|+.||.|..|+|.+++.+++ .||||||+|++.++|++|++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk-----------------skGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK-----------------HKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC-----------------cCCeEEEEeCcHHHHHHHHHh
Confidence 457899999999999999999999999999999987653321 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
||+..++++.|+|..-
T Consensus 169 lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCeEEecceeeeccc
Confidence 9999999999999743
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.21 E-value=5.1e-11 Score=122.45 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=70.4
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+||+.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|.+.++|.+|++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g-----------------~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG-----------------RSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHHhc
Confidence 5899999999999999999999999999999997664322 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 016538 368 NDEGNWRSGLRVRLML 383 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~ 383 (387)
|+..+.++.|+|.++.
T Consensus 249 ~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCcEECCEEEEEEEcc
Confidence 9999999999999853
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=8.2e-11 Score=118.85 Aligned_cols=140 Identities=26% Similarity=0.285 Sum_probs=104.3
Q ss_pred HHHhhhcCCCCCceecccccch-hhhHHhh------ccHHHHHHhhhc--ccceEEeecccccccCCCCcchhhhh-hhc
Q 016538 219 HLIRFILKDPEGYVPISTVASF-KKIKAII------SSHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEE-LQS 288 (387)
Q Consensus 219 fL~~~i~k~~eG~Vpi~~i~sF-kKmK~Lt------~d~~~I~eALr~--S~~LeVsedgkkVRR~~Pl~e~~~~~-~~~ 288 (387)
.+++.|++-.+|-|.+.+..+= +|+|... .+....+.|=++ +.++.|....-.|.-.+|..+-+.+. .+-
T Consensus 180 eIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~V 259 (506)
T KOG0117|consen 180 EILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKV 259 (506)
T ss_pred HHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhhe
Confidence 3555577889999998887764 3333322 122233333222 34677777777777776655443322 345
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
+.|||+||+.++|+|.|+++|+.||.|++|... |.||||-|.++++|.+|++++|
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-------------------------rDYaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-------------------------RDYAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-------------------------cceeEEeecchHHHHHHHHHhc
Confidence 689999999999999999999999999988753 5589999999999999999999
Q ss_pred CCCCCCCceEEEEee
Q 016538 369 DEGNWRSGLRVRLML 383 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~ 383 (387)
+..+.+.-|.|.|+-
T Consensus 315 gkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAK 329 (506)
T ss_pred CceecCceEEEEecC
Confidence 999999999999985
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.20 E-value=5e-11 Score=122.53 Aligned_cols=80 Identities=28% Similarity=0.298 Sum_probs=69.5
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+...++|||+|||.++|+++|+++|++||.|..|+|+.++.++. .||||||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~-----------------skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRR-----------------SKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 45678999999999999999999999999999999987653321 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 016538 365 AELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~ 382 (387)
. |++..+.++.|.|...
T Consensus 149 ~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 149 A-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred H-hCCCEECCeeeEEeec
Confidence 7 8998888888887654
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=7.9e-11 Score=111.93 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=66.6
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
...||||+||+..+|+++|+++|+.||+|..|+|++++. .+++|||+|+++++|+.|+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAll- 62 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAVL- 62 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHHh-
Confidence 457999999999999999999999999999999986531 15689999999999999995
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
|||..+.+..|.|..+.
T Consensus 63 LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 63 LSGATIVDQRVCITRWG 79 (243)
T ss_pred cCCCeeCCceEEEEeCc
Confidence 99999988888887643
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=6e-11 Score=114.78 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=73.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.-+||||.-|++++++.+|++.|++||.|+.|+|++++.+++ .||||||||+++-++..|++.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk-----------------skGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK-----------------SKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC-----------------ccceEEEEeccHHHHHHHHHh
Confidence 458999999999999999999999999999999998876543 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
..+..+.++-|-|.+-..|
T Consensus 163 adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVERGR 181 (335)
T ss_pred ccCceecCcEEEEEecccc
Confidence 9999988888888776554
No 42
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.18 E-value=8.1e-11 Score=124.54 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=69.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+||+.++|+++|+++|+.||.|.+++++.+.+ + ..+|||||+|++.++|.+|++
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-g-----------------~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-G-----------------RSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CcccEEEEEECCHHHHHHHHH
Confidence 3457899999999999999999999999999999876531 1 137899999999999999999
Q ss_pred HHcCCCCC----CCceEEEEeec
Q 016538 366 ELNDEGNW----RSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~----~~gLrV~L~~~ 384 (387)
.|++..++ ++.|.|..+.+
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred HhCCcEecccccceeeEeecccC
Confidence 99999888 77777776543
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.17 E-value=1e-10 Score=124.29 Aligned_cols=77 Identities=26% Similarity=0.304 Sum_probs=64.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++++++|+++|++||.|..|+|+++. ++ .+||||||+|.+.|+|++||+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~-sG-----------------~sRGfaFV~F~~~e~A~~Ai~ 117 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF-SG-----------------QNRGYAFVTFCGKEEAKEAVK 117 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC-CC-----------------CccceEEEEeCCHHHHHHHHH
Confidence 356899999999999999999999999999999998762 22 148999999999999999999
Q ss_pred HHcCCCCC-CCceEEE
Q 016538 366 ELNDEGNW-RSGLRVR 380 (387)
Q Consensus 366 ~Ln~~~~~-~~gLrV~ 380 (387)
.||+..+. ++-|.|.
T Consensus 118 ~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 118 LLNNYEIRPGRLLGVC 133 (578)
T ss_pred HcCCCeecCCcccccc
Confidence 99987653 3444443
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.3e-10 Score=85.90 Aligned_cols=70 Identities=36% Similarity=0.453 Sum_probs=59.1
Q ss_pred eecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCC
Q 016538 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (387)
Q Consensus 293 V~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~ 372 (387)
|+|||.+++.++|+++|+.||.|..+++...+.+ ...+|+|||+|.+.++|.+|++.|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-----------------~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT-----------------GKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC-----------------CCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 5789999999999999999999999998754321 12378999999999999999999998877
Q ss_pred CCCceEE
Q 016538 373 WRSGLRV 379 (387)
Q Consensus 373 ~~~gLrV 379 (387)
.++.|+|
T Consensus 64 ~~~~~~v 70 (71)
T smart00360 64 DGRPLKV 70 (71)
T ss_pred CCcEEEe
Confidence 7776665
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.2e-10 Score=115.80 Aligned_cols=80 Identities=28% Similarity=0.355 Sum_probs=68.9
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
-...+.|||+.||.|+.+++|.-+|++.|+|-.+||+.+..+|. +||||||+|.++|+|++||
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~-----------------nRGYAFVtf~~Ke~Aq~Ai 142 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD-----------------NRGYAFVTFCTKEEAQEAI 142 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC-----------------CcceEEEEeecHHHHHHHH
Confidence 35688999999999999999999999999999999998865442 5999999999999999999
Q ss_pred HHHcCCCCC-CCceEEEE
Q 016538 365 AELNDEGNW-RSGLRVRL 381 (387)
Q Consensus 365 ~~Ln~~~~~-~~gLrV~L 381 (387)
++||+..+- ++-|+|++
T Consensus 143 k~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 143 KELNNYEIRPGKLLGVCV 160 (506)
T ss_pred HHhhCccccCCCEeEEEE
Confidence 999997553 44466654
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=105.90 Aligned_cols=78 Identities=37% Similarity=0.492 Sum_probs=70.0
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+||+.++|+++|.++|+.||.|..|++..++..+ ..+|+|||+|.+.++|.+|++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~-----------------~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETG-----------------KSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccC-----------------ccCceEEEEecCHHHHHHHHHHc
Confidence 5899999999999999999999999999999997764222 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEe
Q 016538 368 NDEGNWRSGLRVRLM 382 (387)
Q Consensus 368 n~~~~~~~gLrV~L~ 382 (387)
++..+.++.|+|...
T Consensus 178 ~~~~~~~~~~~v~~~ 192 (306)
T COG0724 178 NGKELEGRPLRVQKA 192 (306)
T ss_pred CCCeECCceeEeecc
Confidence 999999999999884
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1e-10 Score=102.01 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
....+|||.++.+.+|+++|.+.|..||+|++|.+-.++.+|. -||||+|||++.++|++|+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy-----------------~KGYaLvEYet~keAq~A~~ 132 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGY-----------------VKGYALVEYETLKEAQAAID 132 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccccc-----------------ccceeeeehHhHHHHHHHHH
Confidence 4578999999999999999999999999999999977754332 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.||+..+.+..|.|...--+|
T Consensus 133 ~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 133 ALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred hccchhhhCCceeEEEEEecC
Confidence 999999999999998765443
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.13 E-value=1.4e-10 Score=121.05 Aligned_cols=74 Identities=22% Similarity=0.180 Sum_probs=65.8
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
+|+|||+|||.++|+++|+++|+.||.|.+|+++.. ||||||||++.|+|++|++.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----------------------k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----------------------KRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----------------------CCEEEEEeCchHHHHHHHHHh
Confidence 589999999999999999999999999999998631 679999999999999999975
Q ss_pred --cCCCCCCCceEEEEeec
Q 016538 368 --NDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 368 --n~~~~~~~gLrV~L~~~ 384 (387)
++..++++.|+|.+...
T Consensus 59 ~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred hcCCceEcCeEEEEEecCC
Confidence 66778888999988653
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.5e-11 Score=114.64 Aligned_cols=79 Identities=22% Similarity=0.242 Sum_probs=70.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..+.|+|+|||+..-+.||+.+|++||+|.+|.|+... | +.|||+||+|++.+||++|-++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE----------R---------GSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE----------R---------GSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc----------C---------CCCccceEEecChhhHHHHHHH
Confidence 35689999999999999999999999999999997531 2 3499999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
|+|..+.|+.|.|..+-.
T Consensus 156 LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATA 173 (376)
T ss_pred hhcceeeceEEEEeccch
Confidence 999999999999987753
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5e-10 Score=83.55 Aligned_cols=73 Identities=36% Similarity=0.484 Sum_probs=62.7
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+|+|+|||.+++.++|+++|+.||.|..+.+...... ..+|+|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 5899999999999999999999999999998754210 1378999999999999999999999
Q ss_pred CCCCCCceEEE
Q 016538 370 EGNWRSGLRVR 380 (387)
Q Consensus 370 ~~~~~~gLrV~ 380 (387)
..+++..+.|.
T Consensus 63 ~~~~~~~~~v~ 73 (74)
T cd00590 63 KELGGRPLRVE 73 (74)
T ss_pred CeECCeEEEEe
Confidence 87777777765
No 51
>PLN03213 repressor of silencing 3; Provisional
Probab=99.11 E-value=1.8e-10 Score=117.51 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=67.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH--HHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKA 363 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~--E~A~kA 363 (387)
....+|||+||.+++|+++|+.+|+.||.|..|.|++. + .||||||||.+. +++.+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T-------------------GRGFAFVEMssdddaEeeKA 66 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K-------------------GRSFAYIDFSPSSTNSLTKL 66 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c-------------------CCceEEEEecCCcHHHHHHH
Confidence 34568999999999999999999999999999999632 1 179999999987 789999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 016538 364 IAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~ 383 (387)
|..||+....|+.|||..+.
T Consensus 67 ISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHhcCCeecCceeEEeecc
Confidence 99999998778899998764
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=110.41 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=86.3
Q ss_pred HHHHHHhhhcccceEEeecccccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCC
Q 016538 250 HSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGG 329 (387)
Q Consensus 250 ~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~ 329 (387)
.++..+|+..-.-|.|.....+|.=..|-. +.+.+..|||.+||..+|..||+.+|+.||.|..-||+.++.++-
T Consensus 93 p~DAe~AintlNGLrLQ~KTIKVSyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~- 167 (360)
T KOG0145|consen 93 PKDAEKAINTLNGLRLQNKTIKVSYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL- 167 (360)
T ss_pred hHHHHHHHhhhcceeeccceEEEEeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce-
Confidence 455566666665566654433333222322 246678999999999999999999999999999999988765432
Q ss_pred CCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCC--ceEEEEeecc
Q 016538 330 ASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS--GLRVRLMLRR 385 (387)
Q Consensus 330 ~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~--gLrV~L~~~r 385 (387)
.||.+||.|+.+++|+.||+.||+..--+. .|.|.+++..
T Consensus 168 ----------------srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 168 ----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ----------------ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 288999999999999999999999865443 5888877653
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=2.6e-10 Score=119.11 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=67.9
Q ss_pred hceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+||+. .+|+++|+++|+.||.|..|++++++ +|||||+|++.++|++|+.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------------------~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------------------KETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 457999999997 69999999999999999999986431 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.||+..+.++.|+|.+..
T Consensus 332 ~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999999999998764
No 54
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.10 E-value=1.7e-10 Score=118.75 Aligned_cols=79 Identities=32% Similarity=0.426 Sum_probs=73.6
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
++|||+|+|+++++++|.++|+..|.|.++++.+|+.+|+ .|||+|+||.+.|+|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~-----------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK-----------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC-----------------cCceeeEecCchhhHHHHHHhcC
Confidence 8999999999999999999999999999999999876553 38999999999999999999999
Q ss_pred CCCCCCCceEEEEeec
Q 016538 369 DEGNWRSGLRVRLMLR 384 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~~ 384 (387)
+..+.++.|||.+...
T Consensus 82 g~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASN 97 (435)
T ss_pred CcccCCceEEeecccc
Confidence 9999999999988764
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.1e-10 Score=107.95 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=64.5
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.-..|||+||+++++.|.|+++|++||+|..+.++.|+.+++ .|||+||+|.+.|.|++||+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~r-----------------skGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGR-----------------SKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcc-----------------ccceeeEEeecHHHHHHHhcC
Confidence 446799999999999999999999999999999988876654 289999999999999999997
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
.|-.. .|+.-.+-|+
T Consensus 74 p~piI-dGR~aNcnlA 88 (247)
T KOG0149|consen 74 PNPII-DGRKANCNLA 88 (247)
T ss_pred CCCcc-cccccccchh
Confidence 77653 3444444443
No 56
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.1e-10 Score=106.73 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=65.1
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..+.+||||+||...+|+++|++.|+.||.|..||+..+ +||+||.|++.|.|.+||
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----------------------qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----------------------QGYAFVRFETKEAAAHAI 217 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----------------------cceEEEEecchhhHHHHH
Confidence 356899999999999999999999999999999999533 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
..+|+..+.+.- |+-.+.
T Consensus 218 v~mNntei~G~~--VkCsWG 235 (321)
T KOG0148|consen 218 VQMNNTEIGGQL--VRCSWG 235 (321)
T ss_pred HHhcCceeCceE--EEEecc
Confidence 999999886554 444443
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.2e-09 Score=80.68 Aligned_cols=56 Identities=41% Similarity=0.498 Sum_probs=48.0
Q ss_pred HHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 016538 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 305 L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~ 382 (387)
|.++|++||+|..|++...+ +++|||+|++.++|++|++.||+..+.++.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999985321 378999999999999999999999988888998764
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=6.2e-10 Score=112.23 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=67.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.++.|||+-|+..+|+.+++++|++||.|+.++|+++... ..||||||.|+++|.|..||+.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~------------------~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG------------------LSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccc------------------cccceeEEEEehHHHHHHHHHh
Confidence 4689999999999999999999999999999999876321 1389999999999999999999
Q ss_pred HcCCCCC-C--CceEEEEeec
Q 016538 367 LNDEGNW-R--SGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~-~--~gLrV~L~~~ 384 (387)
||+.... | ..|-|+.+.+
T Consensus 185 ~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred hccceeeccCCCceEEEeccc
Confidence 9997433 2 2577777654
No 59
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=4.9e-10 Score=103.84 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=70.1
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
-.+|.|.||-+-+|-++|..+|++||.|-.|-|-+++.+. ..+|||||-|.++.+|+.|++.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr-----------------~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTR-----------------QSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccc-----------------cccceeEEEeeecchHHHHHHhh
Confidence 3579999999999999999999999999999996654321 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 016538 368 NDEGNWRSGLRVRLML 383 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~ 383 (387)
++..+.++.|+|.++.
T Consensus 76 DG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 76 DGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeeccceeeehhhh
Confidence 9999999999998874
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.99 E-value=6.7e-10 Score=101.15 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=72.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
+..||||+||+..++++-|.++|-+.|.|.+|++-+++-.. ..+|||||||.++|+|+-||+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHHHH
Confidence 45799999999999999999999999999999985443211 2589999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||.-.+.++.|||..+.+.
T Consensus 71 ln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred HHHHHhcCceeEEEecccc
Confidence 9999999999999988743
No 61
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.4e-10 Score=106.70 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=72.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.+.|||||++|-.++|+.-|...|-.||.|+.|.+-.+..++ .+|||+||||+..|||..||.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesq-----------------kHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQ-----------------KHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcc-----------------cccceeEEEeeccchhHHHhh
Confidence 457899999999999999999999999999999985553221 258999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.||+..+.++.|||-|+..
T Consensus 71 NMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 71 NMNESELFGRTIRVNLAKP 89 (298)
T ss_pred cCchhhhcceeEEEeecCC
Confidence 9999999999999999863
No 62
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.3e-09 Score=103.97 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=72.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
....|.|.-||..+|+|+|+.+|+..|+|+++.+++|+.+|-+ -||+||.|-+.+||++||..
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS-----------------LGYGFVNYv~p~DAe~Aint 102 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS-----------------LGYGFVNYVRPKDAEKAINT 102 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccc-----------------cccceeeecChHHHHHHHhh
Confidence 3456888999999999999999999999999999998755432 58999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
||+.++..+.|||..++.
T Consensus 103 lNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 103 LNGLRLQNKTIKVSYARP 120 (360)
T ss_pred hcceeeccceEEEEeccC
Confidence 999999999999999874
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=98.93 E-value=2.7e-09 Score=82.85 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=50.6
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCc
Q 016538 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (387)
Q Consensus 302 ~e~L~e~Fs----~fG~V~~Vr-l~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~g 376 (387)
+++|+++|+ +||.|.+|. +..++.+. . ...+|+|||+|++.++|.+|++.||+..+.++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~-----------~----~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY-----------E----NHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC-----------C----CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 478889998 999999995 65554220 0 013799999999999999999999999888887
Q ss_pred eEEE
Q 016538 377 LRVR 380 (387)
Q Consensus 377 LrV~ 380 (387)
|+++
T Consensus 67 l~~~ 70 (70)
T smart00361 67 VKAE 70 (70)
T ss_pred EEeC
Confidence 7763
No 64
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.6e-09 Score=99.07 Aligned_cols=79 Identities=27% Similarity=0.265 Sum_probs=67.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++-+.+|+.+|.+||.|..|.|..+. ..-.||||||++.-+|+.||.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--------------------g~ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--------------------GPPPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--------------------CCCCeeEEEecCccchhhhhh
Confidence 356899999999999999999999999999999984221 124689999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.-++-.+.+.-|||.|...
T Consensus 64 gRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccccccCcceEEEEeccC
Confidence 9888888888899888753
No 65
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.1e-09 Score=110.99 Aligned_cols=81 Identities=27% Similarity=0.298 Sum_probs=68.5
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.+||||+|||+|+|+++|.+.|++||.|.+++++.++.++. .+|+|||-|.+..+|++||+..
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~-----------------skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH-----------------SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC-----------------cccceEEEeccHHHHHHHHHhc
Confidence 48999999999999999999999999999999998765432 2899999999999999999977
Q ss_pred cC------CCCCCCceEEEEeecc
Q 016538 368 ND------EGNWRSGLRVRLMLRR 385 (387)
Q Consensus 368 n~------~~~~~~gLrV~L~~~r 385 (387)
+- -.+.|+-|+|.++..|
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CccCCCceEEEeccEEeeeeccch
Confidence 31 2344667888888765
No 66
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.8e-09 Score=103.48 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=67.0
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
-|+|+.|..+++.|+|++.|..||+|...|+++|..+++ .|||+||.|-.+++|++||..||+
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K-----------------sKGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK-----------------SKGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCc-----------------ccceeEEeccchHHHHHHHHHhCC
Confidence 589999999999999999999999999999999876543 289999999999999999999999
Q ss_pred CCCCCCceEEEE
Q 016538 370 EGNWRSGLRVRL 381 (387)
Q Consensus 370 ~~~~~~gLrV~L 381 (387)
+=++++.||---
T Consensus 127 qWlG~R~IRTNW 138 (321)
T KOG0148|consen 127 QWLGRRTIRTNW 138 (321)
T ss_pred eeeccceeeccc
Confidence 988777777543
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.9e-10 Score=104.70 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=73.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.++.=|||+|||++.|+.+|--+|++||+|..|.+++++.+|+ .|||||..|++.-+.--||.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGK-----------------SKGFaFLcYEDQRSTILAVD 95 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGK-----------------SKGFAFLCYEDQRSTILAVD 95 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCc-----------------ccceEEEEecCccceEEEEe
Confidence 3566799999999999999999999999999999999976654 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|||..+.++.|||.-..
T Consensus 96 N~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 96 NLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ccCCceecceeEEeeecc
Confidence 999999999999997543
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.5e-09 Score=105.03 Aligned_cols=108 Identities=27% Similarity=0.321 Sum_probs=81.4
Q ss_pred cHHHHHHhhhcccceEEeecccccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCC
Q 016538 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (387)
Q Consensus 249 d~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~ 328 (387)
+..+..+||.+-..-.+. |+.||-- |. ..+...|||+||+++++...|.++|+.||+|.++++..+..
T Consensus 46 ~~~da~~A~~~~n~~~~~--~~~~rim--~s-----~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--- 113 (369)
T KOG0123|consen 46 QPADAERALDTMNFDVLK--GKPIRIM--WS-----QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--- 113 (369)
T ss_pred CHHHHHHHHHHcCCcccC--CcEEEee--hh-----ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---
Confidence 445566666655433332 3334321 11 12233499999999999999999999999999999975531
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 016538 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~~r 385 (387)
| .||| ||+|+++++|++|++.|||..+.+++|.|.+...+
T Consensus 114 ------------g----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 114 ------------G----SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ------------C----ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 1 3899 99999999999999999999999999999988754
No 69
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=6.4e-09 Score=104.98 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=67.3
Q ss_pred hhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 284 ~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
.+.+...+||+-+|..+++.||+++|++||.|..|.|++|+.++ ..||||||.|.+.++|.+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~-----------------~s~gcCFv~~~trk~a~~a 92 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG-----------------QSKGCCFVKYYTRKEADEA 92 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccC-----------------cccceEEEEeccHHHHHHH
Confidence 34566789999999999999999999999999999999886543 2389999999999999999
Q ss_pred HHHHcCCCCCCC---ceEEEEe
Q 016538 364 IAELNDEGNWRS---GLRVRLM 382 (387)
Q Consensus 364 v~~Ln~~~~~~~---gLrV~L~ 382 (387)
+..|.+....-. .++|+.+
T Consensus 93 ~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 93 INALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred HHHhhcccccCCCCcceeeccc
Confidence 999987643321 3555544
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.84 E-value=7.4e-09 Score=104.69 Aligned_cols=77 Identities=29% Similarity=0.341 Sum_probs=67.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHh-ccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs-~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...|+|||.|||+|+.+++|+++|. +.|+|++|.++.+. ++| .||||.|||+++|.++||+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-----------~GK-------~rGcavVEFk~~E~~qKa~ 103 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-----------SGK-------ARGCAVVEFKDPENVQKAL 103 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-----------CCC-------cCCceEEEeeCHHHHHHHH
Confidence 4568899999999999999999996 68999999998774 233 3889999999999999999
Q ss_pred HHHcCCCCCCCceEEE
Q 016538 365 AELNDEGNWRSGLRVR 380 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~ 380 (387)
+.||...+.++.|+|.
T Consensus 104 E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 104 EKLNKYEVNGRELVVK 119 (608)
T ss_pred HHhhhccccCceEEEe
Confidence 9999998888888885
No 71
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.81 E-value=6.7e-09 Score=108.14 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=58.3
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccC------------CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEE
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVG------------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG------------~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFV 352 (387)
....|+|||+|||.++|+++|+++|+.|+ .|..+.+. ..+|||||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~afV 228 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAFL 228 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEEE
Confidence 45679999999999999999999999862 23333331 13789999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 016538 353 EYESVELAEKAIAELNDEGNWRSGLRVR 380 (387)
Q Consensus 353 EFes~E~A~kAv~~Ln~~~~~~~gLrV~ 380 (387)
||++.|+|++||+ |++..+.+..|+|.
T Consensus 229 eF~~~e~A~~Al~-l~g~~~~g~~l~v~ 255 (509)
T TIGR01642 229 EFRTVEEATFAMA-LDSIIYSNVFLKIR 255 (509)
T ss_pred EeCCHHHHhhhhc-CCCeEeeCceeEec
Confidence 9999999999995 99988877777775
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.77 E-value=1.1e-08 Score=109.32 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=72.4
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...+|||||++|+..+++++|..+|+.||+|.+|.|+- ++|||||......+|++|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHH
Confidence 35789999999999999999999999999999998853 3789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccCC
Q 016538 365 AELNDEGNWRSGLRVRLMLRRGV 387 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~rg~ 387 (387)
..|++..+.++-|||+-+..+|+
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred HHHhcccccceeeEEeeeccCCc
Confidence 99999888888888888887775
No 73
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=104.30 Aligned_cols=163 Identities=22% Similarity=0.250 Sum_probs=101.0
Q ss_pred hhcccccccCCCcCCCHHHHhhhc---CCCCCceecccccchhhhHHhhcc--HH---HHHHhhhcccceE-Eeec-c--
Q 016538 202 LNQVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISS--HS---HLASVLRKSSKLV-VSED-G-- 269 (387)
Q Consensus 202 ~kQvEyYFSD~NL~~D~fL~~~i~---k~~eG~Vpi~~i~sFkKmK~Lt~d--~~---~I~eALr~S~~Le-Vsed-g-- 269 (387)
..|||-+||+..-.+-.|+..--. ..+-|||.+++...-++..+.+.. .+ .-.+.++.-...+ +..+ .
T Consensus 19 ~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~ 98 (678)
T KOG0127|consen 19 GEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKA 98 (678)
T ss_pred hhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchh
Confidence 347888899988877666654322 235677776655544443333222 00 0000011000011 1100 0
Q ss_pred --cccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCc
Q 016538 270 --KKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNK 347 (387)
Q Consensus 270 --kkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~K 347 (387)
+.+++..+-. +.-......|+|+|||+.+...+|+.+|+.||.|..|.| |+ +.+|++ .
T Consensus 99 veK~~~q~~~~k--~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~-------------k~dgkl---c 158 (678)
T KOG0127|consen 99 VEKPIEQKRPTK--AKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PR-------------KKDGKL---C 158 (678)
T ss_pred hhcccccCCcch--hhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEc--cc-------------CCCCCc---c
Confidence 1111211111 111223678999999999999999999999999999988 32 222222 5
Q ss_pred cEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 348 LHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 348 G~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
|||||.|.+..+|.+|++.+|+..+.++.|-|..+..
T Consensus 159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 9999999999999999999999999999888877654
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=4.1e-08 Score=96.98 Aligned_cols=149 Identities=18% Similarity=0.180 Sum_probs=98.8
Q ss_pred ChHHHHHHhhcccccccCCCcCCCHHHHhhhcCC------CCCceecccccchhhhHH--hh-ccH---HHHHHhhhccc
Q 016538 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKD------PEGYVPISTVASFKKIKA--II-SSH---SHLASVLRKSS 261 (387)
Q Consensus 194 t~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~------~eG~Vpi~~i~sFkKmK~--Lt-~d~---~~I~eALr~S~ 261 (387)
..|.+.+|.+---||=-+.-.....|.+...++. .|-++...+ +..+|+. +. .|. +.+..|+..+.
T Consensus 142 ~~d~l~~l~rt~p~ykrn~p~Icsf~v~geckRG~ec~yrhEkp~d~~L--~~qni~dryyg~ndPva~kil~ra~~~~~ 219 (377)
T KOG0153|consen 142 PNDMLRKLQRTTPYYKRNRPHICSFFVKGECKRGAECPYRHEKPPDDPL--SLQNIKDRYYGLNDPVALKILNRAGSAGT 219 (377)
T ss_pred hHHHHHHHhccCccccCCCCccccceeeccccccccccccccCCCCcch--hhcccccccccccChHHHHHHhhcccccc
Confidence 4567778888888888777777777776655322 222222222 1222221 11 111 11222222111
Q ss_pred ceEEeecccccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccC
Q 016538 262 KLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEG 341 (387)
Q Consensus 262 ~LeVsedgkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g 341 (387)
.+..++...+||||++|-..+++.+|++.|.+||.|++|++..
T Consensus 220 ------------------lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------------------- 262 (377)
T KOG0153|consen 220 ------------------LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------------------- 262 (377)
T ss_pred ------------------cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-------------------
Confidence 1122345678999999988999999999999999999999852
Q ss_pred cccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeccC
Q 016538 342 MLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 342 ~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.++||||+|.+++.|++|.+++-+. +.-.|.||.|.|.++
T Consensus 263 ----~~~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 ----RKGCAFVTFTTREAAEKAAEKSFNK-LVINGFRLKIKWGRP 302 (377)
T ss_pred ----ccccceeeehhhHHHHHHHHhhcce-eeecceEEEEEeCCC
Confidence 2679999999999999999987773 446788888888765
No 75
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1e-08 Score=105.54 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=58.0
Q ss_pred HHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeec
Q 016538 197 SIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (387)
Q Consensus 197 ~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsed 268 (387)
..+.|.+|||||||.+||.+|.|+++ +||+|.+|++|+||..|+.|+++|.+||+++-+|++..|
T Consensus 300 ~~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d 364 (448)
T KOG2590|consen 300 VIAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD 364 (448)
T ss_pred cccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch
Confidence 34788999999999999999988876 678899999999999999999999999999987776543
No 76
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=1.7e-08 Score=97.80 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=67.5
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
...+|.|+||...++.++|++.|.+||.|....|. |+|+||-|+-.|+|..|++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 45689999999999999999999999999988874 67999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
|++..+.|+.|+|.|--.
T Consensus 132 l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred ccccccccceeeeeeecc
Confidence 999999999999998654
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.5e-08 Score=100.54 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=69.6
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
-|.|||+.+.++..++.|+..|..||.|++|.|.-+-.++ .+||||||||+-.|.|+-|++.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~-----------------kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-----------------KHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccc-----------------cccceEEEEEeCcHHHHHHHHHh
Confidence 4689999999999999999999999999999996543221 25899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 016538 368 NDEGNWRSGLRVRLML 383 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~ 383 (387)
|+..++|++|||.+-+
T Consensus 176 Ng~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPS 191 (544)
T ss_pred ccccccCccccccCCC
Confidence 9999999999997543
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.65 E-value=6.7e-08 Score=89.68 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=67.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhcc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~f-G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...-+|+..+|..+.+.+|..+|.+| |.|..+|+.|.+.+| ..||||||||+++|.|+-|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTG-----------------NSKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTG-----------------NSKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccC-----------------CcCceEEEEeccHHHHHHHHH
Confidence 34568899999999999999999998 788888885544322 248999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.||+-.+.+.=|.|.+|-
T Consensus 111 TMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 111 TMNNYLLMEHLLECHVMP 128 (214)
T ss_pred HhhhhhhhhheeeeEEeC
Confidence 999998888888888763
No 79
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.7e-07 Score=100.39 Aligned_cols=25 Identities=36% Similarity=0.576 Sum_probs=12.5
Q ss_pred CCCCCCCCCccCCCCCCCCc--ccccc
Q 016538 91 PPPHPPSPHHVYPPHGTGAF--HVIPV 115 (387)
Q Consensus 91 ~pp~p~~~~~~~~~~~~~~~--~~~~~ 115 (387)
||||||+.|-+.+|++|+++ -|+||
T Consensus 583 pPPPpp~g~~Gg~ppPP~~gm~pmaPv 609 (1102)
T KOG1924|consen 583 PPPPPPGGFLGGPPPPPPPGMFPMAPV 609 (1102)
T ss_pred CCcCCCCCCCCCCCCCCCCCccccccc
Confidence 33334466655566655542 34444
No 80
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.7e-08 Score=101.28 Aligned_cols=61 Identities=25% Similarity=0.474 Sum_probs=55.4
Q ss_pred HHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcc
Q 016538 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (387)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S 260 (387)
+..+++|||||||.+||..|.||++++.+ +|||++.+|..|.|...+..|.++|..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~k--aGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFKK--AGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhhh--cccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 46778899999999999999999999754 59999999999999999999999998888865
No 81
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=1.7e-07 Score=88.07 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=68.2
Q ss_pred ceeeeeecCCCcccHHHHHH----HHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e----~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
..||||.||++.+..++|++ +|++||+|..|..+... | -+|-|||.|.+.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-------------K-------mRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-------------K-------MRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-------------C-------ccCceEEEecChhHHHHH
Confidence 34999999999999999888 99999999999986431 1 278899999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeec
Q 016538 364 IAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~ 384 (387)
++.|+|..+.|+.||+..+..
T Consensus 69 ~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred HHHhcCCcccCchhheecccC
Confidence 999999999999999998764
No 82
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.56 E-value=8.9e-08 Score=99.27 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=67.8
Q ss_pred eeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 016538 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~ 370 (387)
|||+||..++|+++|+.+|+.||+|+.|.+.++-.+| ..|||+||+|.+.++|.+|++.||+-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG-----------------~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETG-----------------RSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccc-----------------cccCcceEEEecHHHHHHHHHHhccc
Confidence 8999999999999999999999999999986653222 13899999999999999999999999
Q ss_pred CCCCCceEEEEee
Q 016538 371 GNWRSGLRVRLML 383 (387)
Q Consensus 371 ~~~~~gLrV~L~~ 383 (387)
.+-|+-|+|.+..
T Consensus 344 elAGr~ikV~~v~ 356 (549)
T KOG0147|consen 344 ELAGRLIKVSVVT 356 (549)
T ss_pred eecCceEEEEEee
Confidence 9999999998765
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.51 E-value=5.5e-08 Score=96.41 Aligned_cols=148 Identities=18% Similarity=0.293 Sum_probs=95.5
Q ss_pred ccccccCCCcCCCHHHHhhhc---CCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeecccccccCCCCcch
Q 016538 205 VEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (387)
Q Consensus 205 vEyYFSD~NL~~D~fL~~~i~---k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e~ 281 (387)
|.+||+..-...|...++-.. +...|||..+.-... ..+|..... .-||+.|.-+..++..
T Consensus 23 Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v-------------~~vl~~~~h---~~dgr~ve~k~av~r~ 86 (311)
T KOG4205|consen 23 LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGV-------------DAVLNARTH---KLDGRSVEPKRAVSRE 86 (311)
T ss_pred HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcch-------------heeeccccc---ccCCccccceeccCcc
Confidence 347888877777766555321 235556655433322 222322211 1133333332222222
Q ss_pred hh----hhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 282 DL----EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 282 ~~----~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
+. .....+.|+|++|+.++++++|+++|.+||.|..+-++++.++.+ .+||+||+|+++
T Consensus 87 ~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~-----------------~rgFgfv~~~~e 149 (311)
T KOG4205|consen 87 DQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR-----------------PRGFGFVTFDSE 149 (311)
T ss_pred cccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccc-----------------cccceeeEeccc
Confidence 11 112356899999999999999999999999999999888764322 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeeccC
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L~~~rg 386 (387)
+.+++++. ..-..+.++.+.|..+..|.
T Consensus 150 ~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 150 DSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred cccceecc-cceeeecCceeeEeeccchh
Confidence 99998876 45566777778888777654
No 84
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=3.3e-07 Score=91.26 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=68.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..-..|||..+..|.+++||+.+|+.||+|..+.+.+..+. .++|||+||||++..+...||.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~-----------------~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG-----------------RGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC-----------------CCccceeeEEeccccchHHHhh
Confidence 34567999999999999999999999999999999765321 1359999999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 016538 366 ELNDEGNWRSGLRVRL 381 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L 381 (387)
.||--.++|.-|||.-
T Consensus 271 sMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGK 286 (544)
T ss_pred hcchhhcccceEeccc
Confidence 9999888888888853
No 85
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.7e-07 Score=93.01 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=68.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
....|||..|..-+|.++|+-||+.||.|.++.+++++.+|.+ -.||||||++++++++|+-.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhh
Confidence 4578999999999999999999999999999999988654432 34899999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
|++-.+.++-|-|.+-
T Consensus 301 MdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFS 316 (479)
T ss_pred hcceeeccceEEeehh
Confidence 9998888888887653
No 86
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.49 E-value=2.4e-07 Score=84.63 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=68.1
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEE-EEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~V-rl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
...+||+||...+++.-|-..|+.||.+... .++++-.++ ..+||+||.|++.|.+.+|++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg-----------------~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTG-----------------NPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCC-----------------CCCCCeEEechhHHHHHHHHHH
Confidence 3679999999999999999999999987543 333332221 1278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 016538 367 LNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~rg 386 (387)
+|+..+..+.++|..+-+++
T Consensus 159 ~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hccchhcCCceEEEEEEecC
Confidence 99999999999999998764
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.49 E-value=2e-07 Score=94.51 Aligned_cols=75 Identities=28% Similarity=0.257 Sum_probs=65.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.+.|+|+|+|||.+.|++.|++-|..||.|.++.|+... |. | +.|.|.+.|+|++||+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-------------ks-------k--GVVrF~s~edAEra~a 591 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-------------KS-------K--GVVRFFSPEDAERACA 591 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccC-------------Cc-------c--ceEEecCHHHHHHHHH
Confidence 457899999999999999999999999999999885331 11 3 4899999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
.|++-++.++.|+|+++
T Consensus 592 ~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 592 LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HhccCcccCceeeeeeC
Confidence 99999999999999874
No 88
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=1.5e-07 Score=90.53 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=75.1
Q ss_pred hhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 284 ~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
+..++|.|||.-||.+....||...|-.||.|.+.++..|+-++- .|.|+||.|++..+|+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHH
Confidence 346789999999999999999999999999999998887764432 278999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 016538 364 IAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~r 385 (387)
|..|||-.++-+.|||.|.+.|
T Consensus 344 IqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHHhcchhhhhhhhhhhhcCcc
Confidence 9999999998889999987754
No 89
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=3.5e-07 Score=97.25 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=67.2
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+|||+||++++|.++|+..|++.|.|.+|+|..-+. .+ .+ +...|||||||.+.|+|+.|++.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd--------~~-~k-----~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD--------PA-NK-----YLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc--------cc-cc-----ccccceeEEEecCHHHHHHHHHHhcC
Confidence 399999999999999999999999999999853221 01 01 22479999999999999999999999
Q ss_pred CCCCCCceEEEEee
Q 016538 370 EGNWRSGLRVRLML 383 (387)
Q Consensus 370 ~~~~~~gLrV~L~~ 383 (387)
..+.|..|.|.+..
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 99999888888765
No 90
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=3.4e-07 Score=88.92 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=64.8
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
.|||+|||..+++.+|+.+|++||+|..+.|+ |.|+||-.|++..|+.||..|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 58999999999999999999999999999985 67999999999999999999999
Q ss_pred CCCCCCceEEEEeecc
Q 016538 370 EGNWRSGLRVRLMLRR 385 (387)
Q Consensus 370 ~~~~~~gLrV~L~~~r 385 (387)
-.+.+..|.|.-.-.|
T Consensus 59 YtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSK 74 (346)
T ss_pred ceecceEEEEEecccc
Confidence 9999988988765443
No 91
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=8.9e-07 Score=90.01 Aligned_cols=138 Identities=25% Similarity=0.285 Sum_probs=94.4
Q ss_pred hcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeecccccccCCCCcchhhhhhhceeeeeecCCCcccHH
Q 016538 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQ 303 (387)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e 303 (387)
+..+.+| +.-. +..|..-+.....++.+..-|-....+.+...-.+--|..+..+ . ......+||+++..+++.+
T Consensus 108 v~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~--~~~~t~v~vk~~~~~~~~~ 182 (369)
T KOG0123|consen 108 VATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-Y--KKRFTNVYVKNLEEDSTDE 182 (369)
T ss_pred EEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-h--hhhhhhhheeccccccchH
Confidence 3345666 3333 56666555554444444444444455555443333333334333 2 2345689999999999999
Q ss_pred HHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 304 NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 304 ~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
+|.++|+.||.|.++.++.+.. + ..+||+||+|++.|+|.+|++.|++....+.-+.|..+.
T Consensus 183 ~l~~~f~~~g~i~s~~v~~~~~-----------g-------~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 183 ELKDLFSAYGSITSVAVMRDSI-----------G-------KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred HHHHhhcccCcceEEEEeecCC-----------C-------CCCCccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence 9999999999999999975431 1 137899999999999999999999998877777776655
Q ss_pred c
Q 016538 384 R 384 (387)
Q Consensus 384 ~ 384 (387)
+
T Consensus 245 k 245 (369)
T KOG0123|consen 245 K 245 (369)
T ss_pred c
Confidence 4
No 92
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.31 E-value=9e-07 Score=84.57 Aligned_cols=85 Identities=21% Similarity=0.205 Sum_probs=73.2
Q ss_pred hhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 283 ~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
..+.+.+.|||+|+...+|.++++..|+.||.|..|.|..++..+. .|||+||||.+.+.+++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~-----------------~k~~~yvef~~~~~~~~ 158 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGH-----------------PKGFAYVEFSSYELVEE 158 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCC-----------------cceeEEEecccHhhhHH
Confidence 3457789999999999999999999999999999998876643211 38999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeecc
Q 016538 363 AIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~r 385 (387)
|++ ||+..+-+..+.|.+...+
T Consensus 159 ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 159 AYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred Hhh-cCCcccccccceeeeeeee
Confidence 999 9999998999999887653
No 93
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=2.4e-06 Score=91.86 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCcc
Q 016538 84 AMVHPHPPPPHPPSPHHV 101 (387)
Q Consensus 84 ~~~~~~~~pp~p~~~~~~ 101 (387)
+.|.+.+|||||+++|.+
T Consensus 589 ~g~~Gg~ppPP~~gm~pm 606 (1102)
T KOG1924|consen 589 GGFLGGPPPPPPPGMFPM 606 (1102)
T ss_pred CCCCCCCCCCCCCCcccc
Confidence 445445566666666665
No 94
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=92.75 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=62.0
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
...|.|+|||+..+..+++++|+.||.|.+||| |+.. ++ .+.+|||||+|-+..+|.+|+..|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRl--PKK~----------~k-----~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRL--PKKI----------GK-----GAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeecc--chhh----------cc-----hhhccceeeeccCcHHHHHHHHhh
Confidence 457999999999999999999999999999998 3211 11 135899999999999999999999
Q ss_pred cCCCCCCCceEE
Q 016538 368 NDEGNWRSGLRV 379 (387)
Q Consensus 368 n~~~~~~~gLrV 379 (387)
....+.|+-|-+
T Consensus 676 ~STHlyGRrLVL 687 (725)
T KOG0110|consen 676 GSTHLYGRRLVL 687 (725)
T ss_pred cccceechhhhe
Confidence 988777764433
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=4.7e-07 Score=94.16 Aligned_cols=72 Identities=28% Similarity=0.438 Sum_probs=63.4
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+...++|+|-|||.+++.++|.++|+.||+|+.||+.+- .+|.+||||-+.-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----------------------~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----------------------KRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----------------------cCceEEEEEeehHhHHHHH
Confidence 467899999999999999999999999999999886321 2688999999999999999
Q ss_pred HHHcCCCCCCCceE
Q 016538 365 AELNDEGNWRSGLR 378 (387)
Q Consensus 365 ~~Ln~~~~~~~gLr 378 (387)
++|+...+.++.|+
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 99999888777665
No 96
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.16 E-value=7.1e-06 Score=78.85 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=68.5
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..+|+|.||++.++.++|+++|..||.++.+-+-+++. +. ..|+|=|.|+..++|++|++.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-----------G~-------s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-----------GR-------SLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-----------CC-------CCccceeeecchHhHHHHHHHh
Confidence 46799999999999999999999999999998876642 22 2578999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 016538 368 NDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~ 384 (387)
++-.+.+.-|++.+...
T Consensus 145 ~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 145 NGVALDGRPMKIEIISS 161 (243)
T ss_pred cCcccCCceeeeEEecC
Confidence 99888888898888764
No 97
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.06 E-value=6.3e-06 Score=84.83 Aligned_cols=76 Identities=24% Similarity=0.273 Sum_probs=57.2
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..+|||+|||.+++.++|+++|+.||.|+..+|..-. |..+ +..||||+|++.++++.||..-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~----------~~~~-------~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS----------PGGK-------NPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec----------cCCC-------cCceEEEEEeecchhhhhhhcC
Confidence 4569999999999999999999999999988884321 1111 1379999999999999999854
Q ss_pred cCCCCCCCceEEEE
Q 016538 368 NDEGNWRSGLRVRL 381 (387)
Q Consensus 368 n~~~~~~~gLrV~L 381 (387)
-..++++.|.|..
T Consensus 351 -p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 351 -PLEIGGRKLNVEE 363 (419)
T ss_pred -ccccCCeeEEEEe
Confidence 4444444444443
No 98
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.06 E-value=7.3e-06 Score=85.59 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=66.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..|.|||.+|...+---+|+.||++||+|.-..++... | +. +.+.|+||++.+.++|.+||..
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----------R---sP----GaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----------R---SP----GARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----------C---CC----CcceeEEEEecchHHHHHHHHH
Confidence 46889999999888889999999999999888876431 2 11 2388999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
|.-..+.++-|.|.-+
T Consensus 467 LHrTELHGrmISVEka 482 (940)
T KOG4661|consen 467 LHRTELHGRMISVEKA 482 (940)
T ss_pred hhhhhhcceeeeeeec
Confidence 9999999988888654
No 99
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.04 E-value=1.2e-05 Score=79.73 Aligned_cols=92 Identities=21% Similarity=0.146 Sum_probs=66.0
Q ss_pred hhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 282 ~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
..+......|||.|||.|+|.+++.++|++||-|.. +-.++.. |-+-+.......||=|.|.|-.+|+.+
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~-----d~~t~ep-----k~KlYrd~~G~lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR-----DPQTGEP-----KVKLYRDNQGKLKGDALCCYIKRESVE 197 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEec-----cCCCCCe-----eEEEEecCCCCccCceEEEeecccHHH
Confidence 334455667999999999999999999999997631 1111110 100011112234788999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEee
Q 016538 362 KAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 362 kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
-|++.|++..+.+..|+|..+.
T Consensus 198 LA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 198 LAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHHHhCcccccCcEEEEehhh
Confidence 9999999999988889987654
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=2.8e-06 Score=79.85 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=67.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..|||||.||-..++++-|.++|-+-|.|..|.|...+. .+ .| ||||+|+++....-|+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-----------~~-------~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-----------QE-------QK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-----------CC-------Cc-eeeeecccccchhhhhhh
Confidence 468999999999999999999999999999888743221 11 24 899999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
+||..+.+..|+|.+..+
T Consensus 69 ~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 69 ENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred cccchhccchhhcccccC
Confidence 999999999998887653
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=3.6e-06 Score=79.41 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=59.7
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
.|||++|++.+.+.+|+++|..||.|..|.|. .||+||+|++.-+|..||-.|++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999872 57899999999999999999999
Q ss_pred CCCCCCceEEEEeecc
Q 016538 370 EGNWRSGLRVRLMLRR 385 (387)
Q Consensus 370 ~~~~~~gLrV~L~~~r 385 (387)
..+.+.. +.+...+
T Consensus 58 ~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 58 KELCGER--LVVEHAR 71 (216)
T ss_pred ceeccee--eeeeccc
Confidence 9886555 5544443
No 102
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=1.3e-05 Score=77.42 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=65.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.++|.|||+-|...-.+||++++|..||.|+.+.+++- .....||||||.|.+-.||+.||.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg------------------~dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG------------------PDGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC------------------CCCCCCCceEEEeccchHHHHHHH
Confidence 46789999999999999999999999999999988642 122359999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEee
Q 016538 366 ELNDEGNWR---SGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~---~gLrV~L~~ 383 (387)
.|.+.+..- +-|-|.++.
T Consensus 79 aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 79 ALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred HhcccccCCCCccceEEEecc
Confidence 999865432 246666654
No 103
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.91 E-value=3.6e-05 Score=64.98 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=44.3
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
+.|.+.|+..+++.++|++.|+.||.|..|.+.+- ...|||-|.+.++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 57899999999999999999999999999987421 2359999999999999999887
Q ss_pred CC-----CCCCCceEEEEee
Q 016538 369 DE-----GNWRSGLRVRLML 383 (387)
Q Consensus 369 ~~-----~~~~~gLrV~L~~ 383 (387)
.. .+.+..+++.++.
T Consensus 59 ~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 59 EANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp HTTTS-B-TTSSSEEEE---
T ss_pred hccCCceEEcCceEEEEECC
Confidence 66 2334445666553
No 104
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.80 E-value=1.9e-05 Score=78.47 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=54.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
+.+.|+|++|..++|+|.|++.|+.||+|..+.++++..++ | .+||+||+|++.+....++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~-------r----------srgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTG-------R----------SRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCC-------C----------cccccceecCCCcchheeecc
Confidence 57899999999999999999999999999999988876543 2 279999999998888777653
No 105
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.76 E-value=0.00013 Score=59.40 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=47.4
Q ss_pred eeeeeecCCCcccHH----HHHHHHhccC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 289 rTVyV~nLP~d~T~e----~L~e~Fs~fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
..|||.|||.+.+.. -|+.++.-|| +|..|. .+.|+|-|.+.|.|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 469999999987654 5777888886 455442 35699999999999999
Q ss_pred HHHHcCCCCCCCceEEEEe
Q 016538 364 IAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~ 382 (387)
.+.|+++...|++|.|+..
T Consensus 56 ~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHTT--SSSS--EEESS
T ss_pred HHhhcccccccceEEEEEc
Confidence 9999999999999999876
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.74 E-value=8.5e-05 Score=75.31 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=64.3
Q ss_pred ceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
...|.|.||.+ .+|.+-|--+|+.||.|.+|.|++.+ |..|.|.+.+...|+-|+..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 36788899875 47999999999999999999997642 45699999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
|++..+||+.|||.+-
T Consensus 355 L~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLS 370 (492)
T ss_pred hhcceecCceEEEeec
Confidence 9999999999999874
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.73 E-value=5.7e-05 Score=71.21 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=100.9
Q ss_pred HHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccch-hhhHHhhc-----cHHHHHHhhhcccceE-----Ee
Q 016538 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKLV-----VS 266 (387)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sF-kKmK~Lt~-----d~~~I~eALr~S~~Le-----Vs 266 (387)
.++++++|.-.||...=.-|=-.++..++.+..||.++.+.+- .-+++|.. ..-.|..|..+|..++ +.
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v 102 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFV 102 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceec
Confidence 4778888888888766333433344445667788877764432 23333332 1223344444443221 12
Q ss_pred ecccc-----cccC-CCCcch----------------hhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCC
Q 016538 267 EDGKK-----IKRQ-NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (387)
Q Consensus 267 edgkk-----VRR~-~Pl~e~----------------~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~ 324 (387)
+.+++ +++. .+.... +.......++++.|||.+++.+.|..+|.+|.--+.||++..+
T Consensus 103 ~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 103 EKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred cccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 21111 1111 110000 1113456889999999999999999999999999999987431
Q ss_pred CCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCC-CCceEEEEe
Q 016538 325 TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW-RSGLRVRLM 382 (387)
Q Consensus 325 ~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~-~~gLrV~L~ 382 (387)
++.|||||.+...|.-|...|.+-.+. ...|+|..+
T Consensus 183 ----------------------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 183 ----------------------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ----------------------CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 577999999999999999998887665 445666544
No 108
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.71 E-value=2.2e-05 Score=81.81 Aligned_cols=81 Identities=28% Similarity=0.302 Sum_probs=69.5
Q ss_pred hhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 283 ~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
.++.+.||||+.-|....+.-+|+++|+.+|+|..|+++.++.+++ .||.|||||.+.+....
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r-----------------skgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR-----------------SKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh-----------------hcceeEEEEecccchhh
Confidence 3567889999999999999999999999999999999998865432 27899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEE
Q 016538 363 AIAELNDEGNWRSGLRVRL 381 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L 381 (387)
||. |+|+.+.+..|.|.+
T Consensus 237 aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 237 AIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred Hhh-hcCCcccCceeEecc
Confidence 985 999988777776654
No 109
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.67 E-value=4.8e-05 Score=81.36 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=67.2
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+...+.|||+||+..++++.|...|+.||.|..|+|+.+++-.- .| ..+.|+||-|-+..||++|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE-----k~---------r~r~cgfvafmnR~D~era~ 236 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE-----KR---------RERNCGFVAFMNRADAERAL 236 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh-----hc---------cccccceeeehhhhhHHHHH
Confidence 45567899999999999999999999999999999999875321 11 13679999999999999999
Q ss_pred HHHcCCCCCCCceEE
Q 016538 365 AELNDEGNWRSGLRV 379 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV 379 (387)
+.|++..+.+..||+
T Consensus 237 k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 237 KELQGIIVMEYEMKL 251 (877)
T ss_pred HHhcceeeeeeeeee
Confidence 999998776555544
No 110
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.62 E-value=5.9e-05 Score=72.40 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=65.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.++-.||.+.|--++|.+-|-+.|++|-.-...++++++ |.+|+ |||+||.|.+.+++..|++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk----------RTgKS-------kgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK----------RTGKS-------KGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccc----------ccccc-------ccceeeeecCHHHHHHHHH
Confidence 345679999999999999999999999777666666554 44443 8899999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 016538 366 ELNDEGNWRSGLRVR 380 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~ 380 (387)
+|++.+.+.+.|++|
T Consensus 251 em~gkyVgsrpiklR 265 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLR 265 (290)
T ss_pred hhcccccccchhHhh
Confidence 999999988877664
No 111
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.54 E-value=0.00049 Score=57.45 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=52.1
Q ss_pred eeeeeecCCCcccHHHHHHHHhcc--CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~f--G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.||.++|||-..|.++|.+++... |....+-|. .|.++ .+|.|||||.|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP----------iDf~~-------~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP----------IDFKN-------KCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee----------eeccC-------CCceEEEEEEcCCHHHHHHHHHH
Confidence 689999999999999998888653 555555442 22232 14689999999999999999999
Q ss_pred HcCCC
Q 016538 367 LNDEG 371 (387)
Q Consensus 367 Ln~~~ 371 (387)
++|..
T Consensus 65 f~g~~ 69 (97)
T PF04059_consen 65 FNGKK 69 (97)
T ss_pred HcCCc
Confidence 99975
No 112
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.53 E-value=0.00032 Score=66.42 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=60.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.-|||||.|||.|+.-.+|..+|..|---+...+.+.. |.++. -|-+|||+|.+..+|+.|+.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts----------k~~~~------~~pvaFatF~s~q~A~aamna 96 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS----------KGDQV------CKPVAFATFTSHQFALAAMNA 96 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc----------CCCcc------ccceEEEEecchHHHHHHHHH
Confidence 36899999999999999999999988444444443211 11111 157899999999999999999
Q ss_pred HcCCCCC---CCceEEEEee
Q 016538 367 LNDEGNW---RSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~---~~gLrV~L~~ 383 (387)
|||-++. +..|++.|+.
T Consensus 97 LNGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 97 LNGVRFDPETGSTLHIELAK 116 (284)
T ss_pred hcCeeeccccCceeEeeehh
Confidence 9997654 3467777764
No 113
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.49 E-value=0.00019 Score=74.15 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=52.4
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..-|-+.+||+.+|+++|.++|+.|+ |+++.+.+. . +| ..|-|||||+++|++++|++.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~----------Gr-------~sGeA~Ve~~seedv~~Alkk- 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--N----------GR-------PSGEAYVEFTSEEDVEKALKK- 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--C----------CC-------cCcceEEEeechHHHHHHHHh-
Confidence 44677899999999999999999996 777555322 1 22 256699999999999999984
Q ss_pred cCCCCCCCceEE
Q 016538 368 NDEGNWRSGLRV 379 (387)
Q Consensus 368 n~~~~~~~gLrV 379 (387)
+-..+..+-|.|
T Consensus 69 dR~~mg~RYIEV 80 (510)
T KOG4211|consen 69 DRESMGHRYIEV 80 (510)
T ss_pred hHHHhCCceEEE
Confidence 433444444555
No 114
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00016 Score=72.25 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=69.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
....||||.+|+..+|.+.|.++|.+||.|+ +++.+++..+..-+.+ +....|+-|.|.|++.-.|+.||.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ik-----rnK~t~kPki~~y~dk----eT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIK-----RNKRTGKPKIKIYTDK----ETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceec-----cCCCCCCcchhccccc----cccCcCCceeeeecChhhhhhhhh
Confidence 3456999999999999999999999999875 2333322111111111 222458899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.++++.+.++.|+|.+|.+|
T Consensus 135 ~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred hhccccccCCCchhhhhhhc
Confidence 99999999999999998765
No 115
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=7.5e-05 Score=70.62 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=61.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...+.++|.++...+.+++|++.|..+|.+....++ .+++||+|+++++|.+|+.
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcch
Confidence 445678899999999999999999999998555441 4579999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
.|++..+.++.|+|...
T Consensus 152 ~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 152 KLDGKKLNGRRISVEKN 168 (216)
T ss_pred hccchhhcCceeeeccc
Confidence 99999998888887443
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.35 E-value=0.00075 Score=67.31 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=62.1
Q ss_pred hhceeeeeecC--CCc--cc-------HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEe
Q 016538 286 LQSRIVVAENL--PED--HC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (387)
Q Consensus 286 ~~~rTVyV~nL--P~d--~T-------~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEF 354 (387)
...+||+++|+ |.+ .+ .++|++--++||.|.+|.++ ++. +.|.+-|.|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~h--------------------PdGvvtV~f 321 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRH--------------------PDGVVTVSF 321 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccC--------------------CCceeEEEe
Confidence 45789999997 222 12 35677778999999999885 221 267899999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 355 ESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 355 es~E~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
.+.++|..||+.|+|+.+.++.|...|...
T Consensus 322 ~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 322 RNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred CChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 999999999999999999999998888764
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.29 E-value=0.00065 Score=70.37 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=52.5
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~-Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..-.|.+++||+.+|+++|.+||+..--|.. |.+.. +.| ++. .|-|||.|++.|.|++|+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~----------d~r-gR~-------tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPM----------DQR-GRP-------TGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeec----------cCC-CCc-------ccceEEEecCHHHHHHHHH
Confidence 3457889999999999999999998754444 32321 222 111 4669999999999999998
Q ss_pred HHcCCCCCCCceEE
Q 016538 366 ELNDEGNWRSGLRV 379 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV 379 (387)
.-+. .++.+.|.|
T Consensus 164 rhre-~iGhRYIEv 176 (510)
T KOG4211|consen 164 RHRE-NIGHRYIEV 176 (510)
T ss_pred HHHH-hhccceEEe
Confidence 6443 455565555
No 118
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.25 E-value=0.00072 Score=50.16 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=41.6
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+.|.|.|++.+.. +.+.+.|..||+|..+.+- . ...+.||+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 5789999987765 5566689999999998872 0 1457999999999999995
No 119
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.19 E-value=0.00043 Score=65.54 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=55.2
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..||||.||..++|+++|+.+|+.|--...++|+- |. ....|||+|++.|.|..|+..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~------------~~---------g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA------------RG---------GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec------------CC---------CcceEeecHHHHHHHHHHHHHh
Confidence 35799999999999999999999998777777631 11 1346999999999999999998
Q ss_pred cCCCC---CCCceEE
Q 016538 368 NDEGN---WRSGLRV 379 (387)
Q Consensus 368 n~~~~---~~~gLrV 379 (387)
.|..+ .+.||++
T Consensus 269 qg~~~s~~drgg~~i 283 (284)
T KOG1457|consen 269 QGNLLSSSDRGGMHI 283 (284)
T ss_pred hcceeccccCCCccc
Confidence 87643 2345554
No 120
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.15 E-value=0.0011 Score=66.11 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=59.2
Q ss_pred hhceeeeeecCCCcccHHH------HHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCcc--EEEEEeCCH
Q 016538 286 LQSRIVVAENLPEDHCHQN------LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL--HAFVEYESV 357 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~------L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG--~aFVEFes~ 357 (387)
.+..-|||-+|+..+-.|+ -.++|++||+|..|-+-+. + ++.+- ..+ -.||+|.+.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkk-t-----~s~ns----------t~~h~gvYITy~~k 175 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKK-T-----SSLNS----------TASHAGVYITYSTK 175 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccc-c-----ccccc----------ccccceEEEEecch
Confidence 3456789999988776554 3589999999999987422 1 10000 012 259999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEE
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRL 381 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L 381 (387)
|||.+||.+.+|..+.|+-||...
T Consensus 176 edAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 176 EDAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred HHHHHHHHHhccccccCceEeeec
Confidence 999999999999999888888764
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.92 E-value=0.0018 Score=69.51 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=59.9
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCe-eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V-~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
+.|-+.|+|++++.+||.+||..|-.+ .+|++++.. . ++ ..|-|-|-|++.|+|..|+..|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~----------G~-------pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND-D----------GV-------PTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC-C----------CC-------cccceeEeecCHHHHHhhhhcc
Confidence 357789999999999999999999644 355554321 1 11 2566999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 016538 368 NDEGNWRSGLRVRL 381 (387)
Q Consensus 368 n~~~~~~~gLrV~L 381 (387)
+++.+..+.++|+|
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99999888888876
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0027 Score=66.86 Aligned_cols=77 Identities=29% Similarity=0.311 Sum_probs=55.8
Q ss_pred ceeeeeecCCCcc--cHH----HHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 288 SRIVVAENLPEDH--CHQ----NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 288 ~rTVyV~nLP~d~--T~e----~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
...|+|.|+|--- -.+ -|.++|+++|+|..+-+--+ . ..+.+||.|+||++..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~----------e--------~ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPID----------E--------EGGTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccC----------c--------cCCeeeEEEEEecChhhHH
Confidence 3567888888532 223 46789999998887766211 1 1124899999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEEEEe
Q 016538 362 KAIAELNDEGNWRS-GLRVRLM 382 (387)
Q Consensus 362 kAv~~Ln~~~~~~~-gLrV~L~ 382 (387)
+||+.|||.++..+ .+.|+++
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHhcccceecccceEEeehh
Confidence 99999999987654 4566654
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0015 Score=68.56 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=69.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
....+||++||...+++.++++.+.||.++..+++.+...+ .+|||||.||-+......|++.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g-----------------~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG-----------------NSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc-----------------cccceeeeeeeCCcchhhhhcc
Confidence 34579999999999999999999999999999987653221 2589999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
||+..++++.|-|..+.
T Consensus 351 LnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 351 LNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cchhhhcCceeEeehhh
Confidence 99999988988887654
No 124
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.30 E-value=0.0031 Score=60.78 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=58.4
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.-.||+++||..+...-|++||+.||.|-+|-+.....+.. -...|.++.....+ .-+.|||.+.-.|.++.+.|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~--~~r~~~~~n~~~~y---~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKR--AARKRKGGNYKKLY---SEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHH--HHHhhcCCCccccc---hhHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999998743221100 00011111111111 12679999999999999999
Q ss_pred cCCCCCCC
Q 016538 368 NDEGNWRS 375 (387)
Q Consensus 368 n~~~~~~~ 375 (387)
|+..++|+
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99988765
No 125
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.88 E-value=0.03 Score=56.72 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=61.8
Q ss_pred ceeeeeecCCCc-ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d-~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
++.+.|.+|..+ ++-+.|-.+|=.||.|+.|.+++.+ .|.|.||..+.++.++||..
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHHH
Confidence 456788899754 6778899999999999999986431 46799999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
||+..+.+..|.|.+-
T Consensus 345 Lnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVCVS 360 (494)
T ss_pred hccCccccceEEEeec
Confidence 9999998888888764
No 126
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.81 E-value=0.023 Score=59.89 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=46.1
Q ss_pred HHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 016538 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (387)
Q Consensus 303 e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~ 380 (387)
|+++.-+++||.|..|.+-++-. .+.....-|..||||.+.|++++|.++|+|..+.++.+...
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~--------------~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvts 487 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYP--------------DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVAS 487 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCC--------------CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEE
Confidence 34555677899999998855410 00112236789999999999999999999998877654433
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.028 Score=58.87 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=51.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCcc---EEEEEeCCHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAEK 362 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG---~aFVEFes~E~A~k 362 (387)
.-.+.|||++||.+++++.|...|..||.+..=. ++. ...+ ..+-.|| |+|+-|+++...+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdW---P~k-----------~~~~-~~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDW---PGK-----------ANSR-GRAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeec---CCC-----------cccc-ccCCCCCcccEEEEEecchHHHHH
Confidence 4578999999999999999999999999875332 211 0111 1122366 99999999999888
Q ss_pred HHHHHcC
Q 016538 363 AIAELND 369 (387)
Q Consensus 363 Av~~Ln~ 369 (387)
.+.++..
T Consensus 322 Ll~aC~~ 328 (520)
T KOG0129|consen 322 LLSACSE 328 (520)
T ss_pred HHHHHhh
Confidence 8877764
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.76 E-value=0.038 Score=51.32 Aligned_cols=67 Identities=24% Similarity=0.198 Sum_probs=56.5
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.-.|+|.+||...++++|+....+-|.|-...+.+ .|++.|||-..|+++-||..|
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r------------------------Dg~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR------------------------DGVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec------------------------ccceeeeeeehhhHHHHHHhh
Confidence 34689999999999999999999999987776643 357999999999999999999
Q ss_pred cCCCCCCCceE
Q 016538 368 NDEGNWRSGLR 378 (387)
Q Consensus 368 n~~~~~~~gLr 378 (387)
.+..+...|+.
T Consensus 171 d~~~~~seGe~ 181 (241)
T KOG0105|consen 171 DDQKFRSEGET 181 (241)
T ss_pred ccccccCcCcE
Confidence 98876555543
No 129
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.59 E-value=0.028 Score=50.28 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=51.0
Q ss_pred hceeeeeecCC----Cc--cc---HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 287 QSRIVVAENLP----ED--HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 287 ~~rTVyV~nLP----~d--~T---~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
...||.|.-.. .+ .. ..+|-+.|..||+|.-||+.. +.-+|+|.+-
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg 80 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDG 80 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSC
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECcc
Confidence 45577766444 11 11 347788899999999998852 2367999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.|.+|+. |++..+.++.|+|+|...
T Consensus 81 ~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 81 QSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 99999987 899999999999998753
No 130
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=95.50 E-value=0.0083 Score=35.02 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.6
Q ss_pred CcccccCCCCCCCCCC
Q 016538 36 SFSRLNAKAPEFVPTR 51 (387)
Q Consensus 36 ~~~~~~~~ap~~~p~~ 51 (387)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4689999999999974
No 131
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.46 E-value=0.0071 Score=58.32 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHh-ccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 016538 303 QNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (387)
Q Consensus 303 e~L~e~Fs-~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L 381 (387)
|+|-..|+ +||+|+.+.+|.... .. -.|.+||.|..+|+|++|+..||+..+.++.|...|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~----------------~h--l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG----------------DH--LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc----------------hh--hhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 44444444 999999998763210 11 167899999999999999999999987777665544
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.41 E-value=0.014 Score=57.64 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=55.9
Q ss_pred ceeee-eecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVy-V~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++| |.+|+.+++.++|+..|..+|.|..||+.....++ .-+|++||+|.+..++.+++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~-----------------~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG-----------------DSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc-----------------chhhhhhhhhhhchhHHHHhhc
Confidence 34555 99999999999999999999999999985332221 1278999999999999998875
Q ss_pred HcCCCCCCCceEE
Q 016538 367 LNDEGNWRSGLRV 379 (387)
Q Consensus 367 Ln~~~~~~~gLrV 379 (387)
....+.+.-+++
T Consensus 247 -~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 247 -QTRSIGGRPLRL 258 (285)
T ss_pred -ccCcccCccccc
Confidence 444444443333
No 133
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.32 E-value=0.054 Score=45.49 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=48.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...+.|.|=|+|... ...+.+.|++||.|...+-......+.. ....+.......|.|++..+|++||.
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~----------~~~~~~~~NWi~I~Y~~~~~A~rAL~ 72 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGIN----------PYPIPSGGNWIHITYDNPLSAQRALQ 72 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHT
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccc----------cccCCCCCCEEEEECCCHHHHHHHHH
Confidence 345678899999885 4567778999999876652111100000 00122346678899999999999998
Q ss_pred HHcCCCCCCCceEEEE
Q 016538 366 ELNDEGNWRSGLRVRL 381 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L 381 (387)
-||..+.+. +-|.+
T Consensus 73 -~NG~i~~g~-~mvGV 86 (100)
T PF05172_consen 73 -KNGTIFSGS-LMVGV 86 (100)
T ss_dssp -TTTEEETTC-EEEEE
T ss_pred -hCCeEEcCc-EEEEE
Confidence 477765443 44443
No 134
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.15 E-value=0.13 Score=53.92 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.5
Q ss_pred CCCCCC
Q 016538 103 PPHGTG 108 (387)
Q Consensus 103 ~~~~~~ 108 (387)
|+++|.
T Consensus 443 ppPPP~ 448 (569)
T KOG3671|consen 443 PPPPPS 448 (569)
T ss_pred CCCCCC
Confidence 444433
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.72 E-value=0.013 Score=64.52 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=63.4
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
...|+|+|.|+..|.++|+.+|+++|.++++++.. .|.+|. ||-|||.|.++.+|.+++...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gkp-------kg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGKP-------KGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhcccc-------ccceeccCCCcchhhhhcccc
Confidence 45799999999999999999999999999998642 344443 677999999999999999988
Q ss_pred cCCCCCCCceEEEE
Q 016538 368 NDEGNWRSGLRVRL 381 (387)
Q Consensus 368 n~~~~~~~gLrV~L 381 (387)
+...+..+++.|.+
T Consensus 798 d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 798 DVAGKRENNGEVQV 811 (881)
T ss_pred hhhhhhhcCccccc
Confidence 87766667777766
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.68 E-value=0.13 Score=45.98 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=48.0
Q ss_pred hhceeeeeecCCCcc----cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 286 LQSRIVVAENLPEDH----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~----T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
..-.||+|+.|..++ +...+...++.||.|.+|.+|- +-.|.|.|++..+|-
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SAC 139 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSAC 139 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHHH
Confidence 445689998777665 3345556678999999999862 446999999999999
Q ss_pred HHHHHHcCC
Q 016538 362 KAIAELNDE 370 (387)
Q Consensus 362 kAv~~Ln~~ 370 (387)
+|+.++...
T Consensus 140 ~Av~Af~s~ 148 (166)
T PF15023_consen 140 KAVSAFQSR 148 (166)
T ss_pred HHHHhhcCC
Confidence 999998874
No 137
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=94.67 E-value=0.021 Score=63.96 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=47.3
Q ss_pred hcCCCCCceecccccchhhhHHhhccHHHHHHhhhc-ccceEEeecccccccCC
Q 016538 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQN 276 (387)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~-S~~LeVsedgkkVRR~~ 276 (387)
+.-+.||||-|.+||+.-.+--++.+.+-|..||.. |++|+|+.||.|||.+-
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 345899999999999999999999999999999875 78999999999999664
No 138
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.58 E-value=0.083 Score=52.15 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=48.5
Q ss_pred HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 016538 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (387)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L 381 (387)
++++++-.++||+|.+|-|...-.. +.+ + -.-.||||+..++|.||+-.|||.+++|+-++..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~----p~d-e-----------avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQ----PED-E-----------AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCC----ccc-h-----------hheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4578888999999998877653210 111 1 11279999999999999999999999888776655
Q ss_pred e
Q 016538 382 M 382 (387)
Q Consensus 382 ~ 382 (387)
.
T Consensus 364 y 364 (378)
T KOG1996|consen 364 Y 364 (378)
T ss_pred c
Confidence 4
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.40 E-value=0.018 Score=57.47 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=57.5
Q ss_pred hhceeeeeecCCCcccHHH-HH--HHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQN-LM--KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~-L~--e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
++..-+||-+|+.+.-.++ |+ +.|++||.|..|.+..+... .+..+ +--.+||+|+.+|+|..
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~----------~s~~~----~~~s~yITy~~~eda~r 140 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS----------SSSSG----GTCSVYITYEEEEDADR 140 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc----------ccCCC----CCCcccccccchHhhhh
Confidence 4556788889987765443 33 68999999999998654210 11111 13349999999999999
Q ss_pred HHHHHcCCCCCCCceEEEE
Q 016538 363 AIAELNDEGNWRSGLRVRL 381 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L 381 (387)
||...++-.+.++.|+..+
T Consensus 141 ci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 141 CIDDVDGFVDDGRALKASL 159 (327)
T ss_pred HHHHhhhHHhhhhhhHHhh
Confidence 9999988776666555444
No 140
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.23 E-value=0.056 Score=52.35 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=53.5
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
..|||.||...++.|.|++.|+.||.|+..-++.+ .|- +. .+-++|+|..+-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD----------~r~-k~-------t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD----------DRG-KP-------TREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec----------ccc-cc-------cccchhhhhcchhHHHHHHHhc
Confidence 68999999999999999999999999988776544 221 11 2337899999999999999997
Q ss_pred CCCC
Q 016538 369 DEGN 372 (387)
Q Consensus 369 ~~~~ 372 (387)
...+
T Consensus 94 ~~g~ 97 (275)
T KOG0115|consen 94 EGGF 97 (275)
T ss_pred cCcc
Confidence 6544
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.16 E-value=0.014 Score=64.39 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=65.8
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....+||+++||+..+++.+|+..|..+|.|..|+|..+... . ..-|+||.|.+...+-+|+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~------------~------esa~~f~~~~n~dmtp~ak 430 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK------------T------ESAYAFVSLLNTDMTPSAK 430 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC------------c------ccchhhhhhhccccCcccc
Confidence 356899999999999999999999999999999999665321 1 1347999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 016538 365 AELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~ 382 (387)
.++.+..+....+++.|=
T Consensus 431 ~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 431 FEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhcCCccccCccccccc
Confidence 999998876666665543
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.82 E-value=4.4 Score=44.58 Aligned_cols=78 Identities=14% Similarity=0.007 Sum_probs=60.1
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~-Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.-.|||+.||..+++..+.++|++--.|+. |.|.+- |.+. .++-|||+|..++++.+|+..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-------P~~~-----------~~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-------PTDL-----------LRPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-------Cccc-----------ccchhhheeccccccchhhhc
Confidence 457999999999999999999998777766 666431 1111 156799999999999999887
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
-...+.+.+-|||+-..
T Consensus 496 ~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 496 KTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccccccCceEEEeechh
Confidence 67777777778887543
No 143
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.80 E-value=0.14 Score=52.64 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=59.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
...|+-..|+|.++++|+|++.|..-|-+........+ .+-+|++.+++.|+|-.|+-.
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k---------------------d~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK---------------------DRKMALPQLESVEEAIQALID 471 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC---------------------CcceeecccCChhHhhhhccc
Confidence 35689999999999999999999998866444433221 134799999999999999999
Q ss_pred HcCCCCCCC-ceEEEEe
Q 016538 367 LNDEGNWRS-GLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~-gLrV~L~ 382 (387)
+.+..++++ -|||..-
T Consensus 472 ~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 472 LHNHYLGENHHLRVSFS 488 (492)
T ss_pred cccccCCCCceEEEEee
Confidence 988888776 6888753
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.71 E-value=0.081 Score=53.97 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=59.9
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
+.|-|.||...+|.+.+..+|+-.|+|..++|. +......+++. .-.|||-|.+...+.-| ..|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~-------------sRtcyVkf~d~~sv~va-QhLt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVI-------------SRTCYVKFLDSQSVTVA-QHLT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcce-------------eeeEEEeccCCcceeHH-hhhc
Confidence 478899999999999999999999999999984 43222222222 23699999998887655 5577
Q ss_pred CCCCCCCceEEEEee
Q 016538 369 DEGNWRSGLRVRLML 383 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~ 383 (387)
+..+-++.|-|..+.
T Consensus 73 ntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 73 NTVFVDRALIVRPYG 87 (479)
T ss_pred cceeeeeeEEEEecC
Confidence 777777777665543
No 145
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.67 E-value=0.15 Score=53.57 Aligned_cols=63 Identities=22% Similarity=0.180 Sum_probs=52.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHh-ccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs-~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..|||||++||.-+|-++|-.||+ -||.|..+-|-.|. |++. .||-|=|+|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~-------------k~KY----PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP-------------KLKY----PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc-------------ccCC----CCCcceeeecccHHHHHHHh
Confidence 478999999999999999999999 79999999884331 2222 37889999999999999987
Q ss_pred H
Q 016538 366 E 366 (387)
Q Consensus 366 ~ 366 (387)
.
T Consensus 432 a 432 (520)
T KOG0129|consen 432 A 432 (520)
T ss_pred h
Confidence 3
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.36 E-value=0.21 Score=50.96 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=44.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHh-----ccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFS-----AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs-----~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
.-+|..++||+|+|..++.++|. .-|.+.-+.+.++. .| ..|-|||.|.++|+|++
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd---------gr----------pTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD---------GR----------PTGDAFVLFACEEDAQF 221 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC---------CC----------cccceEEEecCHHHHHH
Confidence 45677899999999999999997 33444444443321 11 24669999999999999
Q ss_pred HHHH
Q 016538 363 AIAE 366 (387)
Q Consensus 363 Av~~ 366 (387)
|+..
T Consensus 222 aL~k 225 (508)
T KOG1365|consen 222 ALRK 225 (508)
T ss_pred HHHH
Confidence 9875
No 147
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.31 E-value=0.32 Score=37.41 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=40.7
Q ss_pred ceeeeeecCCCcccHHHHHHHHhcc----CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAV----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~f----G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
...|+|.|+. +++-++|+.+|..| +. ..|.-+- ...|-|.|.+.+.|.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWId------------------------DtScNvvf~d~~~A~~A 58 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWID------------------------DTSCNVVFKDEETAARA 58 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEec------------------------CCcEEEEECCHHHHHHH
Confidence 3478999984 47778999999999 43 3444331 23488999999999999
Q ss_pred HHHH
Q 016538 364 IAEL 367 (387)
Q Consensus 364 v~~L 367 (387)
+..|
T Consensus 59 L~~L 62 (62)
T PF10309_consen 59 LVAL 62 (62)
T ss_pred HHcC
Confidence 9864
No 148
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.75 E-value=0.12 Score=52.66 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=53.5
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCC-eeE--EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~-V~~--Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..+|..++||+..|.|+|-.+|+.|.. |.. |.|..... + ...|-|||+|.++|+|..|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-----------G-------rPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-----------G-------RPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-----------C-------CcChhhhhhhhhhHHHHHHH
Confidence 457899999999999999999999864 333 56654321 1 12567999999999999998
Q ss_pred HHHcCCCCCCCceE
Q 016538 365 AELNDEGNWRSGLR 378 (387)
Q Consensus 365 ~~Ln~~~~~~~gLr 378 (387)
..+.+.....+-|.
T Consensus 342 qk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 342 QKCHKKLMKSRYIE 355 (508)
T ss_pred HHHHHhhcccceEE
Confidence 88777654333333
No 149
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.35 E-value=0.46 Score=38.85 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=41.6
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
-||--.||...-..||.++|+.||.|.--.| +...|||.....+.|..++..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-------------------------~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-------------------------NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-------------------------CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-------------------------cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4555559999999999999999999865555 134699999999999999998864
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.79 E-value=0.021 Score=62.87 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=57.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.+..++||+||+..++.++|...|+.+|.+..|++..-. .. .. .+|.|||+|...+++.+||.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~--------------n~-~~--~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK--------------NE-KR--FRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh--------------hc-cc--cccceeeEeecCCchhhhhh
Confidence 456789999999999999999999999999988875211 11 11 37899999999999999998
Q ss_pred HHcCCCCCCCceEEEE
Q 016538 366 ELNDEGNWRSGLRVRL 381 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L 381 (387)
..... +.+ +++|.|
T Consensus 728 f~d~~-~~g-K~~v~i 741 (881)
T KOG0128|consen 728 FRDSC-FFG-KISVAI 741 (881)
T ss_pred hhhhh-hhh-hhhhhe
Confidence 54443 333 344443
No 151
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.32 E-value=0.62 Score=47.57 Aligned_cols=73 Identities=26% Similarity=0.330 Sum_probs=55.5
Q ss_pred eeeeee--cCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 289 RIVVAE--NLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 289 rTVyV~--nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..|.+. |-=+.+|.+-|..+--..|+|.+|-|.+. +-.-|.|||++.+.|++|-+.
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----------------------ngVQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----------------------NGVQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----------------------cceeeEEeechhHHHHHHHhh
Confidence 344444 43456888999999999999999988632 123599999999999999999
Q ss_pred HcCCCCCC--CceEEEEee
Q 016538 367 LNDEGNWR--SGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~--~gLrV~L~~ 383 (387)
||+..+.. +.|||..+.
T Consensus 179 lNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred cccccccccceeEEEEecC
Confidence 99987654 357776654
No 152
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=90.71 E-value=0.28 Score=49.54 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=56.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCe--eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V--~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.-.+||+||-+++|.++|.+.....|-- ..+++...++.| ..||||+|...+....++.++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NG-----------------QSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNG-----------------QSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCC-----------------cccceEEEEecchHHHHHHHH
Confidence 4578999999999999999988877743 333332222211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 016538 366 ELNDEGNWRSGLRVR 380 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~ 380 (387)
.|-.+.+.+..-.|.
T Consensus 143 iLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVL 157 (498)
T ss_pred hcccceecCCCCeee
Confidence 988888877654443
No 153
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.50 E-value=0.18 Score=55.88 Aligned_cols=69 Identities=28% Similarity=0.221 Sum_probs=54.5
Q ss_pred eeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 016538 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~ 370 (387)
.++.|..-..+...|-.+|++||+|.++|++++ -..|.|+|.+.|.|-.|+..|.|+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhcCC
Confidence 445566666778889999999999999998765 235899999999999999999998
Q ss_pred CCCCCce--EEEEe
Q 016538 371 GNWRSGL--RVRLM 382 (387)
Q Consensus 371 ~~~~~gL--rV~L~ 382 (387)
.....|. ||.++
T Consensus 358 evs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 358 EVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCCceeEEec
Confidence 7665554 44444
No 154
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.50 E-value=0.36 Score=53.81 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=63.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...+-++|++|...+....|...|..||.|..|.+.. .-.||||.|++...|+.|+.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----------------------gq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----------------------GQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----------------------CCcceeeecccCccchhhHH
Confidence 3456799999999999999999999999999987632 13489999999999999999
Q ss_pred HHcCCCCCCC--ceEEEEeec
Q 016538 366 ELNDEGNWRS--GLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~--gLrV~L~~~ 384 (387)
.|.+..+++- -|+|.|+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHhcCcCCCCCcccccccccC
Confidence 9999887653 477777654
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.07 E-value=2.2 Score=36.46 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=45.7
Q ss_pred eeeecCCCcccHHHHHHHHhcc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 291 VVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~f-G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+.+-..|.-++.++|..+.+.+ ..|..+||+++... ++--+.+.|.+.++|....+.+||
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhCC
Confidence 3344445556667777666655 45778888876421 234589999999999999999999
Q ss_pred CCCC
Q 016538 370 EGNW 373 (387)
Q Consensus 370 ~~~~ 373 (387)
+.+.
T Consensus 77 k~Fn 80 (110)
T PF07576_consen 77 KPFN 80 (110)
T ss_pred CccC
Confidence 8664
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=89.31 E-value=0.19 Score=53.77 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=53.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHh-ccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs-~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
.....|+|.||=.-+|.-.|++++. .+|.|+..+| ++ . |.+|||.|.+.++|-.-.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--------------I-------KShCyV~yss~eEA~atr 498 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--------------I-------KSHCYVSYSSVEEAAATR 498 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--------------h-------hcceeEecccHHHHHHHH
Confidence 3467899999999999999999998 6778887776 22 1 557999999999999999
Q ss_pred HHHcCCCCC
Q 016538 365 AELNDEGNW 373 (387)
Q Consensus 365 ~~Ln~~~~~ 373 (387)
.+|++-. |
T Consensus 499 ~AlhnV~-W 506 (718)
T KOG2416|consen 499 EALHNVQ-W 506 (718)
T ss_pred HHHhccc-c
Confidence 9999863 5
No 157
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=89.08 E-value=0.2 Score=52.63 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=7.7
Q ss_pred CCCCCCCCcccccc
Q 016538 154 HHHNNNNSHHQNNQ 167 (387)
Q Consensus 154 ~~~~~~~~~~~~~~ 167 (387)
|.|---|+.-+--+
T Consensus 594 hphrttrsgrkrcs 607 (990)
T KOG1819|consen 594 HPHRTTRSGRKRCS 607 (990)
T ss_pred CCcccccccccccc
Confidence 44556666655433
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.88 E-value=0.43 Score=43.91 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=44.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhc-cCCe---eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~-fG~V---~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
.....|+|++||..+|++++.+.++. +|.- .++.-.......+ . .. -.-|||.|.+.+++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~----------~--~~---~SRaYi~F~~~~~~~ 69 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFK----------P--PT---YSRAYINFKNPEDLL 69 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSST----------T--S-----EEEEEEESSCHHHH
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCC----------C--Cc---ceEEEEEeCCHHHHH
Confidence 34568999999999999998886665 5554 4444323221110 0 01 123999999999999
Q ss_pred HHHHHHcCCCC
Q 016538 362 KAIAELNDEGN 372 (387)
Q Consensus 362 kAv~~Ln~~~~ 372 (387)
..+..++|..+
T Consensus 70 ~F~~~~~g~~F 80 (176)
T PF03467_consen 70 EFRDRFDGHVF 80 (176)
T ss_dssp HHHHHCTTEEE
T ss_pred HHHHhcCCcEE
Confidence 99999988543
No 159
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=88.38 E-value=1.5 Score=48.32 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=6.7
Q ss_pred eeeeecCCCcc
Q 016538 290 IVVAENLPEDH 300 (387)
Q Consensus 290 TVyV~nLP~d~ 300 (387)
+-|++||++.+
T Consensus 530 M~~m~nF~dsv 540 (830)
T KOG1923|consen 530 MEFMGNFPDSV 540 (830)
T ss_pred HHHHHhchhhh
Confidence 34667777653
No 160
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=1.6 Score=46.90 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=63.1
Q ss_pred hceeeeeecCCCc-ccHHHHHHHHhcc----CCeeEEEEeCCCCCCCC--------CC-------CC----C--------
Q 016538 287 QSRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------AS-------SG----S-------- 334 (387)
Q Consensus 287 ~~rTVyV~nLP~d-~T~e~L~e~Fs~f----G~V~~Vrl~~p~~~~~~--------~p-------~~----~-------- 334 (387)
..+.|.|.|+.++ +.-++|.-+|+.| |.|.+|.|+. ..-|+. .| ++ .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp-SeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP-SEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech-hhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4567999999987 5678999999987 7999999863 222211 01 00 0
Q ss_pred -------CcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 016538 335 -------RSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (387)
Q Consensus 335 -------R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L 381 (387)
|-+-+. ++ .-=||.|+|++.+.|.+.++.|+|..+...++++.|
T Consensus 252 ~~~~~kLR~Yq~~-rL--kYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLN-RL--KYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhh-hh--eeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 111000 00 013799999999999999999999998888887766
No 161
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.90 E-value=1.8 Score=33.74 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=39.1
Q ss_pred cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 016538 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (387)
Q Consensus 299 d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~ 375 (387)
.++.++|+.-+.+|+ ...|+. ++ .| -||.|.+.++|++|....++..+...
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 568899999999997 344443 21 12 68999999999999999888766443
No 162
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.24 E-value=2.6 Score=44.10 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=56.1
Q ss_pred ceeeeeecCCCcccHHHHHHHHhcc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~f-G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.++|.|-.+|..+|.-||..|...| -.|..||+++++.. |+-.+.|.|.+.++|...+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 6789999999999999998888765 46889999875421 244699999999999999999
Q ss_pred HcCCCCCC
Q 016538 367 LNDEGNWR 374 (387)
Q Consensus 367 Ln~~~~~~ 374 (387)
+||..+..
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99987654
No 163
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=84.06 E-value=4.7 Score=44.71 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=7.8
Q ss_pred CCChHHHHHHhhccc
Q 016538 192 GLNDESIQKVLNQVE 206 (387)
Q Consensus 192 ~lt~e~~~kI~kQvE 206 (387)
.+.+...++|++++.
T Consensus 388 vf~~~~De~Il~~lD 402 (830)
T KOG1923|consen 388 VFHELNDEKILEALD 402 (830)
T ss_pred hhhhhhHHHHHHhhh
Confidence 334455566666543
No 164
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.10 E-value=1.9 Score=40.07 Aligned_cols=59 Identities=22% Similarity=0.139 Sum_probs=39.7
Q ss_pred cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc--CCCCCCCceE
Q 016538 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN--DEGNWRSGLR 378 (387)
Q Consensus 301 T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln--~~~~~~~gLr 378 (387)
..+.|+++|..|+.+..+..+. ++ | =..|.|.+.++|.+|...|+ +..+.+..|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---------------sF-------r-Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---------------SF-------R-RIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---------------TT-------T-EEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcC---------------CC-------C-EEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 4578999999999887776642 11 1 27799999999999999988 6666666666
Q ss_pred EEEe
Q 016538 379 VRLM 382 (387)
Q Consensus 379 V~L~ 382 (387)
|-+.
T Consensus 65 ~yf~ 68 (184)
T PF04847_consen 65 VYFG 68 (184)
T ss_dssp EE--
T ss_pred EEEc
Confidence 6544
No 165
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.50 E-value=0.79 Score=47.99 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=56.3
Q ss_pred hhceeeeeecCCCcc-cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~-T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
.+.+++-+.-.+... |.++|..-|.+||+|..|.+.+. -..|.|+|.+..+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 355666666666654 67899999999999999988543 124899999999998887
Q ss_pred HHHcCCCCCCCceEEEEee
Q 016538 365 AELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~ 383 (387)
. ..+..+.++-|||..-+
T Consensus 427 ~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 427 A-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred c-cccceecCceeEEEEec
Confidence 7 45666777778887654
No 166
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.02 E-value=3.3 Score=44.16 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 016538 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (387)
Q Consensus 345 ~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~ 375 (387)
++.|||||.|.+.+++.++.++++|. .|.+
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk-~W~~ 458 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGK-KWEK 458 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCC-chhh
Confidence 46799999999999999999999997 4654
No 167
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=78.63 E-value=2.6 Score=43.83 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=45.1
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
.+|++||.+.++..+|+.+|+.-- + +. .|..+-..||+||.+.+..-|.+|++.+++
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~--~~---------------~g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------I--PG---------------SGQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------C--CC---------------CcceeeecceeeccCCchhhhhhhHHhhch
Confidence 589999999999999999998641 0 10 011112368999999999999999999998
Q ss_pred C
Q 016538 370 E 370 (387)
Q Consensus 370 ~ 370 (387)
+
T Consensus 60 k 60 (584)
T KOG2193|consen 60 K 60 (584)
T ss_pred h
Confidence 6
No 168
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=78.02 E-value=1.5 Score=40.76 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=33.3
Q ss_pred cCCCCCceecccccchhhhHHhhccHHHHHHhhhcccc--eEEe---ecccccccCC
Q 016538 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDGKKIKRQN 276 (387)
Q Consensus 225 ~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVs---edgkkVRR~~ 276 (387)
..+.||||+++-++...+++...-+.+.|.++++++.+ +++. .++..||-..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 46889999999999999888777678888888887654 6676 5567887654
No 169
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=77.43 E-value=0.97 Score=47.73 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCccc
Q 016538 146 HHHHRHQNHHHNNNNSHHQ 164 (387)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~ 164 (387)
-|-||||+-+-.|.|---+
T Consensus 583 rhphqhqhrqphphrttrs 601 (990)
T KOG1819|consen 583 RHPHQHQHRQPHPHRTTRS 601 (990)
T ss_pred cCcchhcccCCCCcccccc
Confidence 3344555445555554433
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=77.20 E-value=1.5 Score=43.40 Aligned_cols=81 Identities=16% Similarity=-0.007 Sum_probs=58.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++.|++++-+.+.+.++..+|..+|.+...++..-.. -+..+|+++|.|+..+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-----------------~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-----------------SLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc-----------------ccccccceeeccccHHHHHHHHHh
Confidence 467899999999998888999999999776665532211 123588999999999999999986
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
.....+.++.+...|...
T Consensus 150 s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred hhccccccccccCccccc
Confidence 554444455444444333
No 171
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.92 E-value=10 Score=29.54 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=33.8
Q ss_pred cccHHHHHHHHhccCCe-----eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCC
Q 016538 299 DHCHQNLMKIFSAVGSV-----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (387)
Q Consensus 299 d~T~e~L~e~Fs~fG~V-----~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~ 373 (387)
.++..+|-.++...+.| -.|++. ..|+|||-... .|+++++.|++....
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 45667777777776544 355552 34799998865 778999999999988
Q ss_pred CCceEEEEe
Q 016538 374 RSGLRVRLM 382 (387)
Q Consensus 374 ~~gLrV~L~ 382 (387)
++.++|.++
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 888998875
No 172
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=75.09 E-value=2 Score=39.67 Aligned_cols=39 Identities=10% Similarity=0.416 Sum_probs=34.4
Q ss_pred hcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccc
Q 016538 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (387)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~ 262 (387)
+.+++||||+++.+++.++.+....++++|.++++...+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 456899999999999999999999899999999987654
No 173
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=71.54 E-value=2.9 Score=38.69 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=36.8
Q ss_pred hcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccc--eEEeecccccccCC
Q 016538 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (387)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVsedgkkVRR~~ 276 (387)
+..|.+|||+++.++...+.+....+.+.|.+.+.++.+ .+++ +.+||-.+
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~q 78 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQ 78 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEecc
Confidence 346899999999999876644333477888888887765 5555 56777654
No 174
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=71.32 E-value=32 Score=35.85 Aligned_cols=6 Identities=0% Similarity=0.102 Sum_probs=2.3
Q ss_pred cHHHHH
Q 016538 301 CHQNLM 306 (387)
Q Consensus 301 T~e~L~ 306 (387)
|.++..
T Consensus 471 tkDDaY 476 (487)
T KOG4672|consen 471 TKDDAY 476 (487)
T ss_pred cchHHH
Confidence 333333
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=70.73 E-value=30 Score=35.44 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 016538 42 AKAPEFV 48 (387)
Q Consensus 42 ~~ap~~~ 48 (387)
.+||-|.
T Consensus 241 ~~~P~~~ 247 (498)
T KOG4849|consen 241 NQAPQMR 247 (498)
T ss_pred CcCcccC
Confidence 3455443
No 176
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.71 E-value=11 Score=37.88 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=44.1
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
+.=|.|-+|+..-+. -|...|++||+|.....- + +-.+-+|-|.++-+|+|||. .
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~--~---------------------ngNwMhirYssr~~A~KALs-k 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP--S---------------------NGNWMHIRYSSRTHAQKALS-K 251 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC--C---------------------CCceEEEEecchhHHHHhhh-h
Confidence 345677788765533 466789999999877652 1 12357899999999999988 4
Q ss_pred cCCCCCC
Q 016538 368 NDEGNWR 374 (387)
Q Consensus 368 n~~~~~~ 374 (387)
|+..+.+
T Consensus 252 ng~ii~g 258 (350)
T KOG4285|consen 252 NGTIIDG 258 (350)
T ss_pred cCeeecc
Confidence 6665543
No 177
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=70.42 E-value=1.1 Score=45.94 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=48.7
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.|||+|.+|..++-..++.++|..+|.|.+.++.. + ..+.+|-|+|........|+...
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---------------k------~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS---------------K------SRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---------------c------CCCcchhhhHhhhhhHHHHHHhc
Confidence 38999999999999999999999999998887631 1 12456779999988888887754
Q ss_pred c
Q 016538 368 N 368 (387)
Q Consensus 368 n 368 (387)
+
T Consensus 210 g 210 (479)
T KOG4676|consen 210 G 210 (479)
T ss_pred c
Confidence 4
No 178
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=60.05 E-value=6.2 Score=43.06 Aligned_cols=68 Identities=15% Similarity=0.020 Sum_probs=55.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..-||||+|+-..+..+-++.+...||-|.+.... -|+|.+|...+.+.+|+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------------------------~fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------------------------KFGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------------------------hhcccchhhHHHHHHHHHH
Confidence 45689999999999999999999999988654321 1699999999999999999
Q ss_pred HcCCCCCCCceEEE
Q 016538 367 LNDEGNWRSGLRVR 380 (387)
Q Consensus 367 Ln~~~~~~~gLrV~ 380 (387)
|+.....+.++-+.
T Consensus 93 ~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 93 LTELNIDDQKLIEN 106 (668)
T ss_pred hcccCCCcchhhcc
Confidence 98877777776543
No 179
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=59.33 E-value=7 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=11.0
Q ss_pred ccccccccccccccccccCCCc
Q 016538 111 HVIPVHHQMHHQHHVPVQNYHH 132 (387)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ 132 (387)
||.-...+++++|+--+++.+.
T Consensus 76 ~v~t~ka~~PpeHLrki~~~~s 97 (2365)
T COG5178 76 HVLTLKAPIPPEHLRKIQSPCS 97 (2365)
T ss_pred eeeccCCCCCHHHHHhhhCccc
Confidence 3333334555556655555544
No 180
>PTZ00315 2'-phosphotransferase; Provisional
Probab=52.18 E-value=11 Score=40.88 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.7
Q ss_pred hcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccc--eEEe---ecc-cccccCC
Q 016538 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDG-KKIKRQN 276 (387)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVs---edg-kkVRR~~ 276 (387)
+..+.+|||.++.|+...+.+....+.+.|.++++++.| .+++ +++ .+||-..
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 446899999999999887776555578899999988764 7777 344 3677655
No 181
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=51.74 E-value=18 Score=38.69 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=5.0
Q ss_pred cCCCCCCCCCCC
Q 016538 41 NAKAPEFVPTRN 52 (387)
Q Consensus 41 ~~~ap~~~p~~~ 52 (387)
.+..|+--|...
T Consensus 195 ~~~~~~~~P~~~ 206 (817)
T KOG1925|consen 195 DADSPETAPAAR 206 (817)
T ss_pred CCCCcccChHhh
Confidence 344444444333
No 182
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=51.60 E-value=70 Score=34.59 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=6.8
Q ss_pred HHHHHHhccC
Q 016538 304 NLMKIFSAVG 313 (387)
Q Consensus 304 ~L~e~Fs~fG 313 (387)
-|..+|+-.|
T Consensus 418 ~l~~vyeiLG 427 (582)
T PF03276_consen 418 HLNRVYEILG 427 (582)
T ss_pred HHHHHHHHhC
Confidence 4677777665
No 183
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=51.10 E-value=38 Score=33.85 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=50.9
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+...|+|..+|+..+++.-++..-|-+||.|++|-++....+.. ...+. -..+.+..+-|-+++.|-..+
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~--------d~~~~--d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPS--------DDYND--DKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccc--------ccccc--cccceEEEEeeechHHHHHHH
Confidence 45678999999999999999999999999999999986542211 11110 012457889999998875543
No 184
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.00 E-value=4.8 Score=39.84 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=25.5
Q ss_pred ceeeeeecCCCc------------ccHHHHHHHHhccCCeeEEEE
Q 016538 288 SRIVVAENLPED------------HCHQNLMKIFSAVGSVKTIRT 320 (387)
Q Consensus 288 ~rTVyV~nLP~d------------~T~e~L~e~Fs~fG~V~~Vrl 320 (387)
.-|||..+||-. .+++-|+..|..||.|..|.|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 347887777742 356789999999999988875
No 185
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=49.98 E-value=13 Score=39.01 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.5
Q ss_pred cccccccCCCcCCCHH
Q 016538 204 QVEYYFSDLNLATTDH 219 (387)
Q Consensus 204 QvEyYFSD~NL~~D~f 219 (387)
-||||-.+.||.-|.-
T Consensus 335 ~VEnq~~~~~~Vi~~~ 350 (480)
T KOG2675|consen 335 RVENQENNKNLVIDDA 350 (480)
T ss_pred EEeeecCCcceeeeec
Confidence 5899999999876643
No 186
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=47.38 E-value=94 Score=35.07 Aligned_cols=8 Identities=50% Similarity=0.987 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 016538 42 AKAPEFVP 49 (387)
Q Consensus 42 ~~ap~~~p 49 (387)
-+-|.|+|
T Consensus 611 ~ppPgf~P 618 (894)
T KOG0132|consen 611 HPPPGFVP 618 (894)
T ss_pred CCCCCCCC
Confidence 33333333
No 187
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=46.59 E-value=82 Score=34.09 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=7.0
Q ss_pred ChHHHHHHhhcc
Q 016538 194 NDESIQKVLNQV 205 (387)
Q Consensus 194 t~e~~~kI~kQv 205 (387)
|.|++.+++..|
T Consensus 302 tpd~RcRvvNAL 313 (582)
T PF03276_consen 302 TPDLRCRVVNAL 313 (582)
T ss_pred CccHHHHHHHHH
Confidence 456666666543
No 188
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.50 E-value=65 Score=27.64 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=25.1
Q ss_pred eeeeecCCCc---------ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 290 IVVAENLPED---------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 290 TVyV~nLP~d---------~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
+++|.|++.+ ++.++|++.|+.|..++ |+.++.. .++.|+++|+|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCC
Confidence 5566666543 34578999999998875 4444331 03578999999984
No 189
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=37.27 E-value=1.9e+02 Score=22.21 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=31.3
Q ss_pred cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeC-CHHHHHHHHHHHcCC
Q 016538 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE-SVELAEKAIAELNDE 370 (387)
Q Consensus 301 T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFe-s~E~A~kAv~~Ln~~ 370 (387)
+.-++.+.|+.+| |.-.+|-.- |...+. +.=.-||+|+ ..+..++|++.|...
T Consensus 13 ~L~~vL~~f~~~~-iNlt~IeSR-------P~~~~~---------~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 13 ALARALKLFEEFG-VNLTHIESR-------PSRRNG---------SEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred HHHHHHHHHHHCC-CcEEEEECC-------CCCCCC---------ceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 4567888899987 333343211 111111 1335789988 555677888888764
No 190
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.45 E-value=75 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=39.3
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
-.|-|.+||...--++|-..|+.||.- ..+|. +. -..+||-.|.+...|..|+.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~k-gfdIk---------------------Wv-DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIK---------------------WV-DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcC-CceeE---------------------Ee-ecceeEEeecchHHHHHHhh
Confidence 357789999998889999999999752 12221 00 13468999999999988876
No 191
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.15 E-value=19 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred hhhceeeeeecCCCcccHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKI 308 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~ 308 (387)
....|+|.|.|||....+|+|++.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheee
Confidence 467899999999999999998854
No 192
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=36.13 E-value=61 Score=29.07 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEe
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~ 321 (387)
.....+++.+++..++..++..+|..+|.+..+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeecc
Confidence 456789999999999999999999999999666653
No 193
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=35.58 E-value=1.5e+02 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
.++|.+++..+| +...+|.- . +.-++.|+-+++.+.++++++.+..
T Consensus 36 i~~~~~~~~~~G-a~~~~~sG---------------s------G~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSG---------------S------GGGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEET---------------T------SSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCC---------------C------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 467888889999 55566621 0 1246889999999999999988764
No 194
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.59 E-value=67 Score=32.18 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=40.8
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH-------HHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV-------ELAE 361 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~-------E~A~ 361 (387)
.-||++||+.|+...+|+..+.+-|.+- .+|. .+ +..|-||..|-+. .++.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~is---------------wk------g~~~k~flh~~~~~~~~~~~~~~~ 388 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSIS---------------WK------GHFGKCFLHFGNRKGVPSTQDDMD 388 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEe---------------ee------cCCcceeEecCCccCCCCCchHHH
Confidence 4599999999999999999998877542 2221 11 2355699999764 5667
Q ss_pred HHHHHHc
Q 016538 362 KAIAELN 368 (387)
Q Consensus 362 kAv~~Ln 368 (387)
++++.+|
T Consensus 389 ~~~~s~~ 395 (396)
T KOG4410|consen 389 KVLKSLN 395 (396)
T ss_pred HHhccCC
Confidence 7766655
No 195
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=32.32 E-value=28 Score=33.50 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=58.9
Q ss_pred ChHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhc----ccceE-Eeec
Q 016538 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK----SSKLV-VSED 268 (387)
Q Consensus 194 t~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~----S~~Le-Vsed 268 (387)
+..+.++|.+.++.- .+..+.+ + -.+.|.+.-.++...+++..+..|.+. .+.|++ ...++ +..|
T Consensus 15 ~~~~~~~Iv~~~~~~-------~~~~VlE-i-GpG~G~lT~~L~~~~~~v~~vE~d~~~-~~~L~~~~~~~~~~~vi~~D 84 (262)
T PF00398_consen 15 DPNIADKIVDALDLS-------EGDTVLE-I-GPGPGALTRELLKRGKRVIAVEIDPDL-AKHLKERFASNPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHHTCG-------TTSEEEE-E-SSTTSCCHHHHHHHSSEEEEEESSHHH-HHHHHHHCTTCSSEEEEES-
T ss_pred CHHHHHHHHHhcCCC-------CCCEEEE-e-CCCCccchhhHhcccCcceeecCcHhH-HHHHHHHhhhcccceeeecc
Confidence 445666666665443 2222333 2 235666666665555566666666543 333332 33344 3344
Q ss_pred ccccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHh--ccCCeeEEEE
Q 016538 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFS--AVGSVKTIRT 320 (387)
Q Consensus 269 gkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs--~fG~V~~Vrl 320 (387)
..++.....+ .....++|+|||+..+.+-|.+++. .||.+..+-+
T Consensus 85 ~l~~~~~~~~-------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 85 FLKWDLYDLL-------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp TTTSCGGGHC-------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred hhccccHHhh-------cCCceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 3322211100 2356788999999999998888887 5665544433
No 196
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.59 E-value=1.1e+02 Score=31.20 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=8.4
Q ss_pred CChHHHHHHhhccccccc
Q 016538 193 LNDESIQKVLNQVEYYFS 210 (387)
Q Consensus 193 lt~e~~~kI~kQvEyYFS 210 (387)
..++++.+..+-+|-+.+
T Consensus 215 ~~eklR~r~eeeme~~~a 232 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQA 232 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555444444433
No 197
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=28.79 E-value=62 Score=31.38 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=53.1
Q ss_pred HHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhccc--ceEEee-cccccccCCCCcchhhhhhhceeeeeec
Q 016538 219 HLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSE-DGKKIKRQNPLTESDLEELQSRIVVAEN 295 (387)
Q Consensus 219 fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~--~LeVse-dgkkVRR~~Pl~e~~~~~~~~rTVyV~n 295 (387)
|+.+.. ..|||+--.-...+++=+.+.+-...+...++... -+.|+. |+..-+.-..+++.-.--.+++.+|.++
T Consensus 141 YI~EAH--psDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg 218 (237)
T PF00837_consen 141 YIEEAH--PSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGG 218 (237)
T ss_pred hHhhhC--cCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCC
Confidence 455542 47899866555556666666544433332232222 244443 3333333335555432224678999988
Q ss_pred C-CCcccHHHHHHHHhcc
Q 016538 296 L-PEDHCHQNLMKIFSAV 312 (387)
Q Consensus 296 L-P~d~T~e~L~e~Fs~f 312 (387)
. |.....+||+++.++|
T Consensus 219 ~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 219 PGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCcCCHHHHHHHHHhc
Confidence 7 6778899999998876
No 198
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=28.76 E-value=2.2e+02 Score=29.57 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=9.6
Q ss_pred eecCCCcccHHHHHHHHhcc
Q 016538 293 AENLPEDHCHQNLMKIFSAV 312 (387)
Q Consensus 293 V~nLP~d~T~e~L~e~Fs~f 312 (387)
|+|. +.++..+|+...-..
T Consensus 336 iRna-e~Mn~adIE~~i~~L 354 (457)
T KOG0559|consen 336 IRNA-ESMNFADIEKTIAGL 354 (457)
T ss_pred eccc-ccccHHHHHHHHHHH
Confidence 3443 445556666554443
No 199
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.75 E-value=2.6e+02 Score=20.14 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=27.5
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEe
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~ 321 (387)
|+.|.|+.=..+...+++.+...-.|..+.+-
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd 32 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVD 32 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEE
Confidence 57788888888899999999999789999884
No 200
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.00 E-value=1.2e+02 Score=23.42 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=22.8
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 016538 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 349 ~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~ 382 (387)
+.+|.|.+..+|-+|-+.|.+. |+.++|+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~-----gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN-----GIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC-----CCcEEEe
Confidence 5899999999999999988764 4455554
No 201
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=24.27 E-value=2.3e+02 Score=21.73 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=36.5
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (387)
.++.|.++-=..+...+++..+...-|..+.+-.+ ++.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----------------------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----------------------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----------------------cCeEEEEEcC
Confidence 46788888778888999999999888998887433 3458999998
No 202
>PF14893 PNMA: PNMA
Probab=23.94 E-value=56 Score=33.20 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHhc
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSA 311 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~ 311 (387)
.|.|.|.|||.++++++|++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 478999999999999988877553
No 203
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.71 E-value=54 Score=26.24 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=20.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCC
Q 016538 347 KLHAFVEYESVELAEKAIAELNDE 370 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~Ln~~ 370 (387)
|||.|||=.++++..+|++.+.+-
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCHHHHHHHHhcccce
Confidence 899999999999999998876654
No 204
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.16 E-value=1.8e+02 Score=33.04 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=8.3
Q ss_pred CCCCCceeccccc
Q 016538 226 KDPEGYVPISTVA 238 (387)
Q Consensus 226 k~~eG~Vpi~~i~ 238 (387)
...+||+|-..+.
T Consensus 1092 ~~keG~~P~~Yv~ 1104 (1106)
T KOG0162|consen 1092 NGKEGLFPGNYVT 1104 (1106)
T ss_pred CCccccccccccc
Confidence 3567888766543
No 205
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.92 E-value=1e+02 Score=25.16 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=18.4
Q ss_pred eeeecCCCcccHHHHHHHHhccCC
Q 016538 291 VVAENLPEDHCHQNLMKIFSAVGS 314 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~fG~ 314 (387)
-||-=|..+.++++|++.|+..|.
T Consensus 51 y~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 51 YYVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred EEEEEEeccCCHHHHHHHHHHhCc
Confidence 344446678899999999998873
No 206
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.49 E-value=94 Score=24.04 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=16.2
Q ss_pred HHHHHHHHhccCCeeEEEE
Q 016538 302 HQNLMKIFSAVGSVKTIRT 320 (387)
Q Consensus 302 ~e~L~e~Fs~fG~V~~Vrl 320 (387)
.++|+++|+..|.|..+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999987766
No 207
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.25 E-value=3.9e+02 Score=21.72 Aligned_cols=52 Identities=10% Similarity=0.225 Sum_probs=29.8
Q ss_pred cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC--HHHHHHHHHHHcC
Q 016538 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES--VELAEKAIAELND 369 (387)
Q Consensus 301 T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes--~E~A~kAv~~Ln~ 369 (387)
+.-++.+.|+.+| |.-.+|... |...+. +.=.-||+|+- .+..++|++.|..
T Consensus 27 sL~~vL~~Fa~~~-INLt~IeSR-------P~~~~~---------~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 27 ALAKVLRLFEEKD-INLTHIESR-------PSRLNK---------DEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred HHHHHHHHHHHCC-CCEEEEEec-------cCCCCC---------ceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 4667888899987 333343211 111111 12357899984 4556678887764
No 208
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=21.93 E-value=1.6e+02 Score=31.87 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=6.8
Q ss_pred HHHHhhhcccceEEeecc
Q 016538 252 HLASVLRKSSKLVVSEDG 269 (387)
Q Consensus 252 ~I~eALr~S~~LeVsedg 269 (387)
.|..||-+=..+.|+.||
T Consensus 371 VI~AA~~~FD~~~~~KDG 388 (817)
T KOG1925|consen 371 VIKAALLNFDEFAVSKDG 388 (817)
T ss_pred hhHHHHhcchhhhcchhh
Confidence 333333333333344333
No 209
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.62 E-value=2.8e+02 Score=22.57 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=36.6
Q ss_pred eeeeecCCCcccHHHHHHHHhc-cC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 290 IVVAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~-fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.-|+=.++.++|..+|++.++. || +|..|+.+.... . +| =|||.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~------------~-------~K-KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK------------G-------EK-KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC------------C-------cE-EEEEEeCCCCcHHHHHHhh
Confidence 3444455677888888887776 34 567776643210 0 01 2999999988887765543
No 210
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=21.20 E-value=2.2e+02 Score=26.27 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=13.2
Q ss_pred cccHHHHHHHHhccC
Q 016538 299 DHCHQNLMKIFSAVG 313 (387)
Q Consensus 299 d~T~e~L~e~Fs~fG 313 (387)
..|.++|...+..||
T Consensus 152 tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 152 TLTMEDLSPALAEYG 166 (176)
T ss_pred eeeHHHHHHHHHHhC
Confidence 357899999999999
No 211
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=20.74 E-value=57 Score=20.89 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=15.8
Q ss_pred HHHhhhcCCCCCceecccccc
Q 016538 219 HLIRFILKDPEGYVPISTVAS 239 (387)
Q Consensus 219 fL~~~i~k~~eG~Vpi~~i~s 239 (387)
.+++.+-+|.+|+|..+.+..
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~ 24 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKE 24 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHH
Confidence 456677889999998776553
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.61 E-value=99 Score=28.98 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=45.3
Q ss_pred eeeeecCCCcc-----cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 290 IVVAENLPEDH-----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 290 TVyV~nLP~d~-----T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
++.+.++..++ .....+.+|.+|.+....++++ ..+..-|.|.+.+.|..|.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----------------------sfrrvRi~f~~p~~a~~a~ 68 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----------------------SFRRVRINFSNPEAAADAR 68 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----------------------hhceeEEeccChhHHHHHH
Confidence 45556665543 2335667777777655444421 1334668999999999999
Q ss_pred HHHcCCCCCCC-ceEEEEe
Q 016538 365 AELNDEGNWRS-GLRVRLM 382 (387)
Q Consensus 365 ~~Ln~~~~~~~-gLrV~L~ 382 (387)
..+.+..+.+. .++.-++
T Consensus 69 i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 69 IKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred HHhhhcccCCCceEEEEEc
Confidence 99988877666 5555444
No 213
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=23 Score=37.19 Aligned_cols=74 Identities=7% Similarity=-0.030 Sum_probs=53.9
Q ss_pred eeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCC
Q 016538 292 VAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEG 371 (387)
Q Consensus 292 yV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~ 371 (387)
++..++...+.+++.-+|..||.|..+.+.+-- .|- ..+..+||.-.+ ++|..||..+.-+.
T Consensus 7 ~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~---------------~~~--~~~v~~f~~~~~-~~~~~~i~~~k~q~ 68 (572)
T KOG4365|consen 7 SLKDSVASNNKDQNSMKHEDPSIISMEDGSPYV---------------NGS--LGEVTPFQHAKK-ANGPNYIQPQKRQT 68 (572)
T ss_pred hHhhcccccccchhhhhccCCcceeeccCCccc---------------cCC--cceeeeeeeeec-cCcccccCHHHHhh
Confidence 445677777888999999999999877653211 111 236678887765 56789999888888
Q ss_pred CCCCceEEEEee
Q 016538 372 NWRSGLRVRLML 383 (387)
Q Consensus 372 ~~~~gLrV~L~~ 383 (387)
+.+..+||.|+-
T Consensus 69 ~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 69 TFESQDRKAVSP 80 (572)
T ss_pred hhhhhhhhhcCc
Confidence 888889988763
No 214
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.45 E-value=65 Score=34.69 Aligned_cols=37 Identities=30% Similarity=0.139 Sum_probs=29.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 347 KLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
..++++.|++.+++.+|+..+++....+.-++|.+..
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~ 99 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGA 99 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcc
Confidence 6789999999999999999999875545556665543
No 215
>PRK11901 hypothetical protein; Reviewed
Probab=20.05 E-value=1.5e+02 Score=30.04 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=35.6
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
||-+..+ ..++.|+.|..+++ +..+++.+- .|+++. + -...|=+|.+.++|+.|++.|-.
T Consensus 247 TLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT----------~RnGkp---W---YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 247 TLQLSSA---SRSDTLNAYAKKQN-LSHYHVYET----------KRDGKP---W---YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred EEEeecC---CCHHHHHHHHHHcC-cCceEEEEE----------EECCce---E---EEEEecCcCCHHHHHHHHHhCCH
Confidence 4444443 45778888888776 345555321 122221 0 01122268999999999998865
Q ss_pred C
Q 016538 370 E 370 (387)
Q Consensus 370 ~ 370 (387)
.
T Consensus 307 ~ 307 (327)
T PRK11901 307 E 307 (327)
T ss_pred H
Confidence 3
Done!