Query 016538
Match_columns 387
No_of_seqs 235 out of 1936
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 7.2E-38 2.5E-42 287.1 13.2 170 193-382 8-184 (193)
2 1s29_A LA protein; winged heli 99.9 4.5E-29 1.5E-33 203.9 4.6 89 191-279 4-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 1.2E-26 4.1E-31 192.3 3.6 85 193-279 10-94 (101)
4 4fxv_A ELAV-like protein 1; RN 99.7 2.9E-17 9.9E-22 134.5 9.3 81 286-383 17-97 (99)
5 3s8s_A Histone-lysine N-methyl 99.7 1.2E-16 4.1E-21 133.4 9.1 81 287-384 5-85 (110)
6 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.5E-16 8.7E-21 123.8 9.6 82 287-385 5-86 (87)
7 2dnz_A Probable RNA-binding pr 99.7 6.6E-16 2.3E-20 123.5 11.5 82 287-385 4-85 (95)
8 1p27_B RNA-binding protein 8A; 99.6 7.1E-16 2.4E-20 125.9 11.2 84 286-386 21-104 (106)
9 2x1f_A MRNA 3'-END-processing 99.6 4.1E-16 1.4E-20 125.5 9.3 82 288-386 2-83 (96)
10 1x5s_A Cold-inducible RNA-bind 99.6 6.8E-16 2.3E-20 125.2 10.5 82 287-385 11-92 (102)
11 1whw_A Hypothetical protein ri 99.6 6.5E-16 2.2E-20 124.7 10.0 83 286-385 6-88 (99)
12 2lxi_A RNA-binding protein 10; 99.6 8.9E-17 3.1E-21 129.3 4.8 81 288-385 1-83 (91)
13 3p5t_L Cleavage and polyadenyl 99.6 2.1E-16 7.3E-21 126.1 6.9 79 289-384 2-82 (90)
14 3md1_A Nuclear and cytoplasmic 99.6 7E-16 2.4E-20 120.2 9.7 80 289-385 2-81 (83)
15 3ns6_A Eukaryotic translation 99.6 2.7E-16 9.2E-21 128.4 7.6 81 287-384 5-92 (100)
16 4f25_A Polyadenylate-binding p 99.6 3.6E-16 1.2E-20 130.7 8.5 79 288-385 5-83 (115)
17 2dgs_A DAZ-associated protein 99.6 9.7E-16 3.3E-20 123.8 10.7 82 286-385 8-89 (99)
18 2adc_A Polypyrimidine tract-bi 99.6 1.9E-15 6.4E-20 140.0 13.4 75 288-384 151-227 (229)
19 2do4_A Squamous cell carcinoma 99.6 7.5E-16 2.6E-20 124.7 9.3 82 286-385 15-96 (100)
20 2dgp_A Bruno-like 4, RNA bindi 99.6 1E-15 3.4E-20 125.0 9.8 83 286-385 11-96 (106)
21 2fy1_A RNA-binding motif prote 99.6 1.2E-15 4E-20 128.1 10.2 82 286-385 5-86 (116)
22 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5.7E-16 2E-20 121.2 7.7 80 286-382 5-84 (85)
23 2dgo_A Cytotoxic granule-assoc 99.6 9.2E-16 3.1E-20 127.2 9.3 83 286-385 13-95 (115)
24 2cph_A RNA binding motif prote 99.6 1.5E-15 5E-20 124.1 10.3 83 286-385 13-97 (107)
25 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.4E-20 123.3 9.8 80 286-382 11-98 (99)
26 2cq4_A RNA binding motif prote 99.6 5.7E-16 1.9E-20 128.5 7.7 83 284-384 21-103 (114)
27 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.1E-20 125.6 9.6 84 286-386 24-107 (110)
28 3r27_A HnRNP L, heterogeneous 99.6 1.2E-15 4.1E-20 126.3 9.5 78 286-386 19-98 (100)
29 2cq0_A Eukaryotic translation 99.6 6.9E-16 2.4E-20 125.6 8.0 83 286-385 13-95 (103)
30 2jrs_A RNA-binding protein 39; 99.6 1.2E-15 4.1E-20 126.5 9.5 84 286-386 24-107 (108)
31 1u6f_A Tcubp1, RNA-binding pro 99.6 8E-16 2.7E-20 131.7 8.8 84 285-385 39-122 (139)
32 2cpz_A CUG triplet repeat RNA- 99.6 7.8E-16 2.7E-20 127.8 8.4 83 286-385 23-105 (115)
33 1p1t_A Cleavage stimulation fa 99.6 8.6E-16 2.9E-20 124.9 8.4 83 286-385 6-88 (104)
34 1x5u_A Splicing factor 3B subu 99.6 1.2E-15 4.1E-20 124.4 9.3 83 286-385 13-95 (105)
35 3ucg_A Polyadenylate-binding p 99.6 8.8E-16 3E-20 121.2 8.2 82 285-384 3-84 (89)
36 1s79_A Lupus LA protein; RRM, 99.6 1.5E-15 5.2E-20 125.4 9.9 79 285-382 8-86 (103)
37 1x5t_A Splicing factor 3B subu 99.6 6.4E-16 2.2E-20 123.8 7.4 82 287-385 4-86 (96)
38 2e5h_A Zinc finger CCHC-type a 99.6 9.9E-16 3.4E-20 122.3 8.4 80 286-382 14-93 (94)
39 2dnm_A SRP46 splicing factor; 99.6 9.7E-16 3.3E-20 124.7 8.4 82 286-384 11-92 (103)
40 1sjq_A Polypyrimidine tract-bi 99.6 5.8E-16 2E-20 129.2 7.1 78 286-386 14-93 (105)
41 2cqc_A Arginine/serine-rich sp 99.6 1.2E-15 4.1E-20 121.8 8.6 81 286-383 13-93 (95)
42 2lkz_A RNA-binding protein 5; 99.6 5.3E-16 1.8E-20 126.6 6.6 79 288-383 9-93 (95)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.6E-16 2.6E-20 124.9 7.5 82 287-385 11-92 (102)
44 4a8x_A RNA-binding protein wit 99.6 7E-16 2.4E-20 121.3 7.0 83 287-385 3-85 (88)
45 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.6E-15 5.4E-20 123.4 9.1 81 286-385 13-93 (103)
46 1x4h_A RNA-binding protein 28; 99.6 1.7E-15 5.8E-20 124.5 9.3 83 286-385 13-101 (111)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 2.8E-15 9.5E-20 122.2 10.5 82 286-385 13-97 (105)
48 2ywk_A Putative RNA-binding pr 99.6 1.5E-15 5E-20 121.5 8.5 80 286-383 14-93 (95)
49 1wex_A Hypothetical protein (r 99.6 2.4E-15 8.4E-20 124.6 10.0 76 287-385 14-91 (104)
50 2kxn_B Transformer-2 protein h 99.6 1.8E-15 6E-20 129.6 9.4 83 286-385 44-126 (129)
51 2d9p_A Polyadenylate-binding p 99.6 2E-15 6.8E-20 122.8 9.1 81 286-385 13-93 (103)
52 2ad9_A Polypyrimidine tract-bi 99.6 2E-15 7E-20 128.6 9.6 77 287-386 30-108 (119)
53 3ex7_B RNA-binding protein 8A; 99.6 2.7E-15 9.3E-20 126.3 10.1 83 286-385 20-102 (126)
54 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.8E-20 126.7 7.4 75 287-384 14-91 (102)
55 2div_A TRNA selenocysteine ass 99.6 1.2E-15 4.2E-20 123.0 7.5 83 286-385 7-94 (99)
56 2khc_A Testis-specific RNP-typ 99.6 9.4E-16 3.2E-20 127.8 6.9 80 286-382 38-117 (118)
57 2cq3_A RNA-binding protein 9; 99.6 3.9E-15 1.3E-19 121.1 10.3 81 286-385 13-93 (103)
58 3ulh_A THO complex subunit 4; 99.6 2.7E-15 9.3E-20 122.7 9.3 80 286-383 27-106 (107)
59 2cpf_A RNA binding motif prote 99.6 1.1E-15 3.8E-20 123.1 6.8 85 287-385 4-88 (98)
60 2cpe_A RNA-binding protein EWS 99.6 1.3E-15 4.3E-20 126.0 7.0 83 286-385 13-103 (113)
61 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.5E-15 5.1E-20 116.7 6.9 76 289-382 1-76 (77)
62 2dnq_A RNA-binding protein 4B; 99.6 5.4E-15 1.8E-19 117.6 10.1 75 286-385 6-80 (90)
63 2err_A Ataxin-2-binding protei 99.6 1.9E-15 6.5E-20 125.1 7.7 82 286-386 27-108 (109)
64 3n9u_C Cleavage and polyadenyl 99.6 2.2E-15 7.4E-20 133.4 8.5 81 287-384 54-136 (156)
65 1x4a_A Splicing factor, argini 99.6 3E-15 1E-19 123.1 8.7 79 286-384 20-98 (109)
66 2dgx_A KIAA0430 protein; RRM d 99.6 3.6E-15 1.2E-19 120.5 8.8 79 287-385 8-90 (96)
67 1whx_A Hypothetical protein ri 99.6 5.2E-15 1.8E-19 123.2 10.0 76 286-384 8-83 (111)
68 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.1E-20 125.1 7.9 81 286-384 15-95 (116)
69 1why_A Hypothetical protein ri 99.6 6E-15 2.1E-19 118.9 10.0 76 287-385 16-93 (97)
70 2cq1_A PTB-like protein L; RRM 99.6 3.9E-15 1.3E-19 122.9 8.9 77 287-386 14-92 (101)
71 2dgv_A HnRNP M, heterogeneous 99.6 4.7E-15 1.6E-19 117.9 9.1 81 286-385 6-86 (92)
72 2ki2_A SS-DNA binding protein 99.6 1.3E-15 4.5E-20 120.8 5.8 79 289-385 2-80 (90)
73 2dhg_A TRNA selenocysteine ass 99.6 3.2E-15 1.1E-19 121.7 8.2 82 286-385 7-90 (104)
74 2cpj_A Non-POU domain-containi 99.6 3.6E-15 1.2E-19 120.7 8.4 77 286-385 13-89 (99)
75 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.6E-15 1.6E-19 129.7 9.6 82 286-384 37-118 (156)
76 3s7r_A Heterogeneous nuclear r 99.6 2.8E-15 9.7E-20 118.1 7.5 79 286-382 9-87 (87)
77 2cqp_A RNA-binding protein 12; 99.6 1.3E-15 4.4E-20 122.7 5.5 83 287-386 14-96 (98)
78 2kt5_A RNA and export factor-b 99.6 7.8E-15 2.7E-19 123.5 10.5 82 286-385 33-114 (124)
79 2do0_A HnRNP M, heterogeneous 99.6 4.9E-15 1.7E-19 122.5 9.1 80 287-384 14-93 (114)
80 1x5o_A RNA binding motif, sing 99.6 6.2E-15 2.1E-19 122.0 9.6 83 286-386 23-113 (114)
81 2xnq_A Nuclear polyadenylated 99.6 6.2E-15 2.1E-19 119.7 9.4 76 286-386 20-96 (97)
82 2rs2_A Musashi-1, RNA-binding 99.6 3.6E-15 1.2E-19 123.6 8.2 83 285-385 22-104 (109)
83 2wbr_A GW182, gawky, LD47780P; 99.6 3.5E-15 1.2E-19 120.9 7.6 73 288-383 7-79 (89)
84 2jwn_A Embryonic polyadenylate 99.6 4.1E-15 1.4E-19 124.9 8.3 83 284-384 32-114 (124)
85 1x4g_A Nucleolysin TIAR; struc 99.6 4.2E-15 1.4E-19 122.4 8.2 77 286-385 23-99 (109)
86 1x4f_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 126.0 7.6 76 287-385 24-102 (112)
87 2krb_A Eukaryotic translation 99.6 3.1E-15 1E-19 116.9 6.9 73 288-379 1-80 (81)
88 1wi8_A EIF-4B, eukaryotic tran 99.6 4.2E-15 1.4E-19 121.3 8.0 82 286-385 13-94 (104)
89 2cpi_A CCR4-NOT transcription 99.6 3E-15 1E-19 124.1 7.2 86 286-385 13-101 (111)
90 2mss_A Protein (musashi1); RNA 99.6 4E-15 1.4E-19 114.1 7.3 75 290-382 1-75 (75)
91 2dgt_A RNA-binding protein 30; 99.6 5.5E-15 1.9E-19 118.0 8.3 75 286-385 8-82 (92)
92 2dis_A Unnamed protein product 99.6 6.7E-15 2.3E-19 120.7 9.0 82 287-385 7-92 (109)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.7E-15 9.2E-20 122.1 6.5 82 285-385 16-98 (100)
94 2dng_A Eukaryotic translation 99.6 5.1E-15 1.7E-19 120.6 8.1 81 286-385 13-93 (103)
95 2kvi_A Nuclear polyadenylated 99.6 1.1E-14 3.7E-19 117.5 9.7 75 286-385 8-83 (96)
96 1x4e_A RNA binding motif, sing 99.6 2.6E-15 8.9E-20 117.8 5.9 77 287-380 4-80 (85)
97 2dnp_A RNA-binding protein 14; 99.6 6E-15 2.1E-19 117.3 7.9 75 286-385 7-81 (90)
98 2ek1_A RNA-binding protein 12; 99.6 2.3E-15 7.8E-20 120.4 5.4 80 287-383 14-93 (95)
99 2ytc_A PRE-mRNA-splicing facto 99.6 5.4E-15 1.9E-19 115.8 7.4 74 286-382 10-84 (85)
100 1x4b_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 122.9 7.9 83 285-385 24-106 (116)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.8E-15 2E-19 125.7 8.1 80 286-382 61-140 (140)
102 2hvz_A Splicing factor, argini 99.6 9.5E-15 3.3E-19 118.4 9.0 75 289-385 1-75 (101)
103 3md3_A Nuclear and cytoplasmic 99.6 1.5E-14 5.3E-19 124.6 10.8 81 286-383 85-165 (166)
104 3lqv_A PRE-mRNA branch site pr 99.6 1.4E-14 4.8E-19 120.1 10.0 78 287-384 7-84 (115)
105 2la4_A Nuclear and cytoplasmic 99.6 4.2E-15 1.4E-19 120.5 6.7 75 287-384 26-100 (101)
106 2dgu_A Heterogeneous nuclear r 99.6 7E-15 2.4E-19 119.9 7.9 74 287-385 10-83 (103)
107 2e5j_A Methenyltetrahydrofolat 99.6 9.8E-15 3.3E-19 117.8 8.7 78 286-385 17-94 (97)
108 2lea_A Serine/arginine-rich sp 99.5 6.4E-15 2.2E-19 126.9 7.9 83 286-385 45-127 (135)
109 2dh8_A DAZ-associated protein 99.5 2.9E-15 9.8E-20 122.3 5.3 82 286-385 14-95 (105)
110 1wg5_A Heterogeneous nuclear r 99.5 1.2E-14 4E-19 119.2 8.6 82 286-386 13-95 (104)
111 2kn4_A Immunoglobulin G-bindin 99.5 1.2E-14 4.1E-19 126.8 9.2 83 286-385 68-150 (158)
112 2qfj_A FBP-interacting repress 99.5 3.5E-14 1.2E-18 128.2 12.5 83 286-385 123-205 (216)
113 4f02_A Polyadenylate-binding p 99.5 1.2E-14 4.2E-19 133.1 9.4 82 285-385 100-181 (213)
114 2jvr_A Nucleolar protein 3; RN 99.5 6.5E-15 2.2E-19 123.7 6.9 78 287-385 27-105 (111)
115 2m2b_A RNA-binding protein 10; 99.5 3E-15 1E-19 127.7 4.9 81 286-384 21-107 (131)
116 2jvo_A Nucleolar protein 3; nu 99.5 9.5E-15 3.2E-19 121.1 7.7 76 285-385 28-103 (108)
117 1b7f_A Protein (SXL-lethal pro 99.5 4.4E-14 1.5E-18 122.4 12.1 80 286-382 87-168 (168)
118 2a3j_A U1 small nuclear ribonu 99.5 1.9E-14 6.7E-19 123.4 9.7 79 287-385 28-110 (127)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.8E-14 6.2E-19 127.5 9.7 84 286-386 70-153 (165)
120 2cqg_A TDP-43, TAR DNA-binding 99.5 1.6E-14 5.6E-19 117.4 8.5 81 286-385 13-93 (103)
121 1wez_A HnRNP H', FTP-3, hetero 99.5 1E-14 3.6E-19 119.8 7.4 80 286-385 13-92 (102)
122 2i2y_A Fusion protein consists 99.5 2.7E-14 9.2E-19 124.0 10.1 78 286-385 71-148 (150)
123 2g4b_A Splicing factor U2AF 65 99.5 2.9E-14 9.9E-19 124.2 10.3 113 249-383 60-172 (172)
124 2nlw_A Eukaryotic translation 99.5 1.1E-14 3.6E-19 119.7 7.1 79 287-384 14-99 (105)
125 1x4c_A Splicing factor, argini 99.5 1.8E-14 6.1E-19 118.8 8.4 75 287-385 14-93 (108)
126 2cpd_A Apobec-1 stimulating pr 99.5 2.1E-14 7.3E-19 116.0 8.6 75 286-385 13-89 (99)
127 2dgw_A Probable RNA-binding pr 99.5 1.7E-14 5.7E-19 114.8 7.8 80 286-385 8-87 (91)
128 1iqt_A AUF1, heterogeneous nuc 99.5 6.6E-15 2.3E-19 112.7 5.3 75 290-382 1-75 (75)
129 3q2s_C Cleavage and polyadenyl 99.5 1.1E-14 3.7E-19 136.5 7.9 80 287-383 67-148 (229)
130 1fxl_A Paraneoplastic encephal 99.5 7.4E-14 2.5E-18 120.4 12.5 79 286-381 86-166 (167)
131 2db1_A Heterogeneous nuclear r 99.5 6.5E-15 2.2E-19 123.8 5.4 80 286-384 15-97 (118)
132 3nmr_A Cugbp ELAV-like family 99.5 3.6E-14 1.2E-18 123.5 10.2 79 286-382 93-174 (175)
133 2cpy_A RNA-binding protein 12; 99.5 7E-15 2.4E-19 122.5 5.3 80 286-384 13-93 (114)
134 1fj7_A Nucleolin RBD1, protein 99.5 5.1E-15 1.8E-19 120.0 3.7 81 286-385 15-95 (101)
135 2cqh_A IGF-II mRNA-binding pro 99.5 1.6E-14 5.5E-19 115.3 6.3 75 287-385 7-83 (93)
136 2lmi_A GRSF-1, G-rich sequence 99.5 9.8E-15 3.4E-19 120.3 5.1 80 286-384 9-91 (107)
137 2hgl_A HNRPF protein, heteroge 99.5 1.2E-14 4.2E-19 126.2 5.8 80 286-384 42-124 (136)
138 2cjk_A Nuclear polyadenylated 99.5 6.5E-14 2.2E-18 121.4 10.3 82 286-385 85-166 (167)
139 2e44_A Insulin-like growth fac 99.5 6.3E-14 2.1E-18 112.3 9.4 78 287-385 14-92 (96)
140 1nu4_A U1A RNA binding domain; 99.5 1.7E-14 5.9E-19 115.7 5.8 80 286-385 6-89 (97)
141 2hzc_A Splicing factor U2AF 65 99.5 4E-14 1.4E-18 111.1 7.7 71 286-380 4-85 (87)
142 2dnn_A RNA-binding protein 12; 99.5 3.2E-14 1.1E-18 118.9 7.4 78 287-384 15-92 (109)
143 2fc9_A NCL protein; structure 99.5 2.8E-14 9.5E-19 115.6 6.7 79 286-385 13-91 (101)
144 4f02_A Polyadenylate-binding p 99.5 6E-14 2.1E-18 128.5 9.6 81 287-384 14-94 (213)
145 1wel_A RNA-binding protein 12; 99.5 1.1E-14 3.6E-19 123.0 4.0 81 286-384 23-103 (124)
146 2lcw_A RNA-binding protein FUS 99.2 2.6E-15 8.8E-20 125.1 0.0 83 286-385 5-95 (116)
147 1fjc_A Nucleolin RBD2, protein 99.5 1.8E-14 6.1E-19 115.5 5.0 79 286-386 14-92 (96)
148 1fxl_A Paraneoplastic encephal 99.5 9E-14 3.1E-18 119.8 9.6 80 288-384 2-81 (167)
149 1wf1_A RNA-binding protein RAL 99.5 4.4E-14 1.5E-18 116.5 7.2 72 287-383 26-98 (110)
150 2xs2_A Deleted in azoospermia- 99.5 2.6E-14 8.8E-19 116.0 5.6 80 286-385 7-86 (102)
151 2cpx_A Hypothetical protein FL 99.5 6E-14 2.1E-18 116.1 7.9 79 286-385 23-105 (115)
152 1x5p_A Negative elongation fac 99.5 7.4E-14 2.5E-18 112.6 8.2 74 287-385 14-87 (97)
153 3beg_B Splicing factor, argini 99.5 9.6E-14 3.3E-18 116.0 9.1 73 287-383 15-92 (115)
154 2fc8_A NCL protein; structure 99.5 6.5E-14 2.2E-18 113.5 7.7 80 286-385 13-92 (102)
155 1sjr_A Polypyrimidine tract-bi 99.5 1.2E-13 4.1E-18 123.8 10.2 77 288-385 46-124 (164)
156 2f3j_A RNA and export factor b 99.5 1.1E-13 3.9E-18 124.6 9.8 80 287-384 87-166 (177)
157 1l3k_A Heterogeneous nuclear r 99.5 1.4E-13 4.7E-18 122.4 10.0 82 286-385 102-183 (196)
158 2hgn_A Heterogeneous nuclear r 99.5 2.3E-14 7.9E-19 124.9 4.7 80 286-385 44-123 (139)
159 3md3_A Nuclear and cytoplasmic 99.5 1.1E-13 3.8E-18 119.1 9.0 78 289-384 1-78 (166)
160 3pgw_A U1-A; protein-RNA compl 99.5 8.5E-14 2.9E-18 131.6 8.8 75 287-383 206-281 (282)
161 2yh0_A Splicing factor U2AF 65 99.5 1.3E-13 4.3E-18 122.8 9.4 84 286-386 112-195 (198)
162 3tyt_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 127.1 9.1 75 287-383 3-78 (205)
163 1wg1_A KIAA1579 protein, homol 99.5 8E-14 2.7E-18 110.6 6.8 75 287-385 4-78 (88)
164 2qfj_A FBP-interacting repress 99.5 2.1E-13 7.2E-18 123.0 10.4 83 285-384 25-107 (216)
165 2cq2_A Hypothetical protein LO 99.5 5.8E-14 2E-18 118.8 6.2 75 287-384 24-105 (114)
166 1b7f_A Protein (SXL-lethal pro 99.5 1E-13 3.6E-18 120.0 8.0 80 288-384 3-82 (168)
167 1fje_B Nucleolin RBD12, protei 99.4 2.3E-13 7.8E-18 119.3 9.7 79 285-385 96-174 (175)
168 2bz2_A Negative elongation fac 99.4 2.8E-13 9.7E-18 114.7 8.9 76 286-386 37-112 (121)
169 2e5i_A Heterogeneous nuclear r 99.4 4.6E-13 1.6E-17 114.7 9.9 74 289-385 26-102 (124)
170 3pgw_S U1-70K; protein-RNA com 99.4 5.1E-13 1.7E-17 136.4 11.9 82 287-385 101-182 (437)
171 3zzy_A Polypyrimidine tract-bi 99.4 3.4E-13 1.2E-17 116.6 8.9 74 289-384 29-105 (130)
172 3d2w_A TAR DNA-binding protein 99.4 3.6E-13 1.2E-17 107.8 8.0 74 286-385 9-84 (89)
173 2hgm_A HNRPF protein, heteroge 99.4 1.5E-13 5E-18 118.1 6.1 79 287-385 41-121 (126)
174 1l3k_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 119.7 8.8 81 286-384 11-91 (196)
175 1qm9_A Polypyrimidine tract-bi 99.4 9.2E-13 3.1E-17 118.0 11.5 75 288-384 120-196 (198)
176 2dnl_A Cytoplasmic polyadenyla 99.4 2.4E-13 8.3E-18 113.1 7.1 67 287-368 7-73 (114)
177 3nmr_A Cugbp ELAV-like family 99.4 6.1E-13 2.1E-17 115.7 9.9 81 287-382 2-85 (175)
178 2e5g_A U6 snRNA-specific termi 99.4 1.9E-13 6.6E-18 109.5 6.2 76 287-385 7-82 (94)
179 2dha_A FLJ20171 protein; RRM d 99.4 9.5E-14 3.3E-18 118.6 4.6 80 286-384 21-104 (123)
180 3egn_A RNA-binding protein 40; 99.4 2.8E-13 9.5E-18 116.7 7.1 78 287-384 44-129 (143)
181 2adc_A Polypyrimidine tract-bi 99.4 9.6E-13 3.3E-17 121.7 9.5 77 286-384 32-109 (229)
182 2ghp_A U4/U6 snRNA-associated 99.4 8.5E-13 2.9E-17 125.4 8.6 82 286-385 208-291 (292)
183 1qm9_A Polypyrimidine tract-bi 99.4 7.2E-13 2.5E-17 118.7 7.6 76 287-384 2-78 (198)
184 2diu_A KIAA0430 protein; struc 99.4 1.1E-12 3.8E-17 107.5 8.0 69 290-385 11-84 (96)
185 2pe8_A Splicing factor 45; RRM 99.4 2E-12 6.9E-17 107.2 9.7 82 286-383 6-92 (105)
186 3u1l_A PRE-mRNA-splicing facto 99.4 1.4E-12 4.7E-17 123.6 9.7 76 286-384 132-228 (240)
187 1wf0_A TDP-43, TAR DNA-binding 99.4 2.2E-13 7.4E-18 107.8 3.3 70 287-382 4-73 (88)
188 3pgw_A U1-A; protein-RNA compl 99.4 1.7E-12 5.7E-17 122.7 10.0 79 286-384 7-89 (282)
189 2cjk_A Nuclear polyadenylated 99.3 8.2E-13 2.8E-17 114.4 6.6 78 287-383 2-79 (167)
190 2j8a_A Histone-lysine N-methyl 99.3 7.4E-13 2.5E-17 114.5 5.6 77 289-382 3-93 (136)
191 3smz_A Protein raver-1, ribonu 99.3 2.1E-12 7.2E-17 122.2 9.2 82 286-385 182-264 (284)
192 3smz_A Protein raver-1, ribonu 99.3 8.4E-12 2.9E-16 118.0 13.2 81 287-384 94-174 (284)
193 3sde_A Paraspeckle component 1 99.3 4.6E-12 1.6E-16 119.5 8.7 75 286-383 20-94 (261)
194 3sde_A Paraspeckle component 1 99.3 1E-11 3.5E-16 117.1 9.7 79 287-383 95-177 (261)
195 2dit_A HIV TAT specific factor 99.3 1.2E-11 4E-16 102.7 8.4 78 287-385 14-102 (112)
196 2g4b_A Splicing factor U2AF 65 99.3 8.2E-12 2.8E-16 108.6 7.8 74 287-384 3-87 (172)
197 3tyt_A Heterogeneous nuclear r 99.2 1.2E-11 4.1E-16 113.6 7.9 70 288-376 123-194 (205)
198 3v4m_A Splicing factor U2AF 65 99.2 1.9E-11 6.3E-16 101.2 8.2 82 287-383 4-95 (105)
199 2ghp_A U4/U6 snRNA-associated 99.2 2.2E-11 7.7E-16 115.5 9.4 80 287-384 116-196 (292)
200 2yh0_A Splicing factor U2AF 65 99.2 1.1E-11 3.9E-16 110.1 6.7 74 287-384 3-87 (198)
201 1jmt_A Splicing factor U2AF 35 99.2 1.1E-11 3.6E-16 102.5 5.3 72 293-382 20-103 (104)
202 1fje_B Nucleolin RBD12, protei 99.2 4.5E-12 1.5E-16 110.9 1.7 80 286-384 11-90 (175)
203 3ue2_A Poly(U)-binding-splicin 99.2 6.3E-11 2.1E-15 100.4 8.0 85 286-383 18-107 (118)
204 3tht_A Alkylated DNA repair pr 99.1 5.1E-11 1.7E-15 118.3 7.3 64 287-373 17-82 (345)
205 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.4E-10 1.2E-14 93.2 9.8 64 298-385 27-90 (100)
206 3s6e_A RNA-binding protein 39; 99.0 4.2E-10 1.5E-14 94.7 6.6 76 287-383 6-91 (114)
207 1owx_A Lupus LA protein, SS-B, 98.9 2.1E-09 7E-14 91.8 8.7 76 286-384 16-95 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.7 1.8E-08 6.1E-13 81.7 6.7 71 288-384 7-85 (91)
209 3dxb_A Thioredoxin N-terminall 98.7 4.9E-08 1.7E-12 89.5 8.6 71 300-383 141-211 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.5 6.4E-08 2.2E-12 79.0 4.7 71 287-383 14-93 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.9 3E-05 1E-09 64.9 7.6 71 287-380 20-95 (117)
212 2dhx_A Poly (ADP-ribose) polym 96.8 0.0077 2.6E-07 49.7 9.7 69 288-382 8-81 (104)
213 1wey_A Calcipressin 1; structu 96.4 0.005 1.7E-07 50.9 5.6 71 289-382 6-81 (104)
214 1uw4_A UPF3X; nonsense mediate 96.3 0.01 3.5E-07 47.8 6.9 70 289-373 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 96.2 0.009 3.1E-07 48.8 6.4 53 290-368 18-70 (100)
216 3pq1_A Poly(A) RNA polymerase; 96.1 0.0024 8.1E-08 65.6 2.8 59 284-365 49-107 (464)
217 1wwh_A Nucleoporin 35, nucleop 95.9 0.028 9.5E-07 47.5 8.0 70 286-381 22-91 (119)
218 3ctr_A Poly(A)-specific ribonu 95.5 0.011 3.6E-07 48.5 4.0 53 291-368 8-60 (101)
219 2kn4_A Immunoglobulin G-bindin 94.3 0.026 8.7E-07 48.2 3.4 25 346-370 12-36 (158)
220 2l08_A Regulator of nonsense t 93.4 0.069 2.4E-06 43.5 4.1 70 288-372 9-78 (97)
221 2i2y_A Fusion protein consists 93.4 0.027 9.1E-07 47.9 1.7 37 347-384 13-50 (150)
222 3p3d_A Nucleoporin 53; structu 90.4 0.39 1.4E-05 41.1 5.5 82 288-375 7-89 (132)
223 3d45_A Poly(A)-specific ribonu 88.2 0.9 3.1E-05 46.9 7.4 64 289-382 441-504 (507)
224 3htx_A HEN1; HEN1, small RNA m 82.0 0.93 3.2E-05 49.9 4.1 89 192-281 102-209 (950)
225 4f25_A Polyadenylate-binding p 79.8 0.7 2.4E-05 37.3 1.8 19 286-304 95-113 (115)
226 1jh4_B PAIP1, polyadenylate-bi 79.2 0.89 3E-05 27.9 1.6 17 37-53 3-19 (26)
227 2l4h_A Calcium and integrin-bi 75.9 0.38 1.3E-05 43.0 -1.1 46 192-239 30-83 (214)
228 1wfx_A Probable RNA 2'-phospho 63.3 3.2 0.00011 37.4 2.1 50 224-276 22-75 (186)
229 3tla_A MCCF; serine protease, 50.2 3.4 0.00012 40.9 0.0 11 288-298 264-274 (371)
230 1d1d_A Protein (capsid protein 47.6 6.1 0.00021 37.4 1.3 21 188-208 31-51 (262)
231 1i4w_A Mitochondrial replicati 47.3 19 0.00064 35.3 4.9 23 289-311 143-165 (353)
232 3fry_A Probable copper-exporti 45.6 64 0.0022 22.7 6.6 55 288-366 6-60 (73)
233 2yjp_A Putative ABC transporte 42.0 5.4 0.00018 36.4 0.0 15 191-205 78-92 (291)
234 3na8_A Putative dihydrodipicol 41.9 45 0.0016 31.8 6.6 32 289-320 151-186 (315)
235 3uau_A JLPA, surface-exposed l 40.6 5.8 0.0002 37.9 0.0 8 362-369 309-316 (379)
236 4a4j_A Pacszia, cation-transpo 39.7 88 0.003 21.3 6.5 33 289-321 4-36 (69)
237 4faj_A PRGZ; substrate binding 35.5 7.9 0.00027 37.4 0.0 9 305-313 219-227 (564)
238 3ied_A Heat shock protein; HSP 34.4 52 0.0018 31.2 5.5 23 287-309 128-150 (272)
239 3lqv_A PRE-mRNA branch site pr 34.4 8.3 0.00028 30.4 -0.0 21 294-314 89-109 (115)
240 2es4_D Lipase chaperone; prote 32.3 9.5 0.00032 37.2 0.0 11 200-210 84-94 (332)
241 2yln_A Putative ABC transporte 30.5 11 0.00036 34.3 0.0 13 192-204 81-93 (283)
242 2oar_A Large-conductance mecha 30.4 11 0.00036 33.6 0.0 10 302-311 137-146 (174)
243 3uau_A JLPA, surface-exposed l 29.1 12 0.0004 35.8 0.0 6 193-198 29-34 (379)
244 3dxs_X Copper-transporting ATP 29.0 1.4E+02 0.0049 20.5 7.9 55 289-366 4-62 (74)
245 3tla_A MCCF; serine protease, 28.6 12 0.00041 36.9 0.0 11 196-206 61-71 (371)
246 4faj_A PRGZ; substrate binding 28.5 12 0.00041 36.1 0.0 32 351-383 386-417 (564)
247 2yjp_A Putative ABC transporte 28.3 12 0.00042 33.9 0.0 8 286-293 162-169 (291)
248 3ipq_A Oxysterols receptor LXR 28.0 18 0.0006 33.8 1.0 20 189-208 38-57 (283)
249 2es4_D Lipase chaperone; prote 28.0 12 0.00043 36.4 0.0 9 201-209 104-112 (332)
250 3fwy_A Light-independent proto 27.8 13 0.00043 35.6 0.0 9 305-313 236-244 (314)
251 2c07_A 3-oxoacyl-(acyl-carrier 27.7 13 0.00044 34.1 0.0 14 354-367 251-264 (285)
252 2px7_A 2-C-methyl-D-erythritol 27.2 13 0.00045 33.3 0.0 14 131-144 3-16 (236)
253 1uoz_A Putative cellulase; hyd 27.0 15 0.0005 35.7 0.3 14 131-144 3-16 (315)
254 3c3r_A Programmed cell death 6 26.9 13 0.00046 36.5 0.0 6 147-152 9-14 (380)
255 4axs_A Carbamate kinase; oxido 26.7 14 0.00046 36.1 0.0 14 131-144 3-16 (332)
256 1jxh_A Phosphomethylpyrimidine 26.6 14 0.00047 34.3 0.0 15 131-145 3-17 (288)
257 2c0d_A Thioredoxin peroxidase 26.6 14 0.00047 33.2 0.0 14 131-144 3-16 (221)
258 3dfz_A SIRC, precorrin-2 dehyd 26.5 14 0.00047 33.9 0.0 14 131-144 3-16 (223)
259 3tcm_A Alanine aminotransferas 26.5 18 0.00061 36.2 0.8 32 289-320 239-277 (500)
260 3cio_A ETK, tyrosine-protein k 26.1 14 0.00048 34.7 0.0 16 355-370 249-264 (299)
261 2g0c_A ATP-dependent RNA helic 25.7 44 0.0015 24.6 2.7 36 347-383 40-75 (76)
262 3a5i_A Flagellar biosynthesis 25.5 15 0.0005 36.7 0.0 14 131-144 3-16 (389)
263 3odm_A Pepcase, PEPC, phosphoe 24.8 16 0.00053 38.1 0.0 14 131-144 3-16 (560)
264 1jgn_B PAIP2, polyadenylate-bi 24.7 42 0.0014 20.2 1.9 16 36-51 2-17 (26)
265 2yln_A Putative ABC transporte 24.7 16 0.00053 33.1 0.0 6 287-292 163-168 (283)
266 2axq_A Saccharopine dehydrogen 24.3 16 0.00055 37.0 0.0 14 131-144 3-16 (467)
267 1jr2_A Uroporphyrinogen-III sy 23.8 17 0.00057 33.8 0.0 10 130-139 3-12 (286)
268 4e4j_A Arginine deiminase; L-a 23.6 17 0.00057 36.4 0.0 8 150-157 15-22 (433)
269 4e8u_A Putative uncharacterize 23.4 2E+02 0.0069 25.3 7.0 48 290-357 14-72 (172)
270 1c07_A Protein (epidermal grow 23.3 22 0.00077 27.1 0.7 21 220-240 15-35 (95)
271 3b9f_I Protein C inhibitor; mi 23.2 17 0.00059 35.8 0.0 14 131-144 3-16 (395)
272 3rce_A Oligosaccharide transfe 22.8 18 0.00061 39.0 0.0 10 130-139 715-724 (724)
273 2qrj_A Saccharopine dehydrogen 22.3 19 0.00063 36.0 0.0 14 131-144 3-16 (394)
274 3k9f_C DNA topoisomerase 4 sub 22.3 19 0.00064 34.2 0.0 14 131-144 3-16 (268)
275 2l4h_A Calcium and integrin-bi 22.2 19 0.00064 31.7 0.0 22 219-240 95-117 (214)
276 3etc_A AMP-binding protein; ad 22.1 19 0.00064 36.8 0.0 14 131-144 3-16 (580)
277 2xci_A KDO-transferase, 3-deox 21.6 19 0.00067 34.5 0.0 14 131-144 3-16 (374)
278 3cio_A ETK, tyrosine-protein k 21.3 20 0.00068 33.7 0.0 7 262-268 136-142 (299)
279 2r9r_B Paddle chimera voltage 21.2 20 0.00069 36.7 0.0 6 216-221 99-104 (514)
280 3fwy_A Light-independent proto 21.2 20 0.00069 34.2 0.0 8 190-197 56-63 (314)
281 3tut_A RNA 3'-terminal phospha 20.2 22 0.00075 35.1 0.0 23 347-369 212-234 (358)
282 3ga4_A Dolichyl-diphosphooligo 20.1 23 0.00078 31.3 0.1 12 129-140 163-174 (178)
283 1qwz_A NPQTN specific sortase 20.1 29 0.00099 32.0 0.8 11 131-141 2-12 (235)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=7.2e-38 Score=287.06 Aligned_cols=170 Identities=26% Similarity=0.395 Sum_probs=148.1
Q ss_pred CChHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcc--cceEEeeccc
Q 016538 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSEDGK 270 (387)
Q Consensus 193 lt~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S--~~LeVsedgk 270 (387)
-.++++++|++||||||||+||.+|.||+++|.++ +|||+|.+|++|+||++|+.|.+.|++||+.| ..|++++++.
T Consensus 8 ~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~ 86 (193)
T 2voo_A 8 KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKT 86 (193)
T ss_dssp -CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSS
T ss_pred CcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccc
Confidence 34788999999999999999999999999999766 99999999999999999999999999999999 8999999999
Q ss_pred ccccCC--CCcch---hhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccC
Q 016538 271 KIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFS 345 (387)
Q Consensus 271 kVRR~~--Pl~e~---~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~ 345 (387)
+|||.. |.++. ...+...++|||+|||.++|+++|+++|+.||.|..|+|+++.+ + .
T Consensus 87 ~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-----------~-------~ 148 (193)
T 2voo_A 87 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-----------K-------A 148 (193)
T ss_dssp EEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-----------C-------C
T ss_pred eEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-----------C-------C
Confidence 999984 33332 23456789999999999999999999999999999999986532 1 1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 016538 346 NKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 346 ~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~ 382 (387)
.||||||+|++.++|++|++.++. .+.|+.|+|...
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEET
T ss_pred cccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEh
Confidence 389999999999999999987654 677777887653
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=4.5e-29 Score=203.94 Aligned_cols=89 Identities=35% Similarity=0.610 Sum_probs=85.9
Q ss_pred CCCChHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccc
Q 016538 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (387)
Q Consensus 191 ~~lt~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgk 270 (387)
..+++++.++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.|.+.|++||+.|..|||++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~ 83 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGL 83 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 016538 271 KIKRQNPLT 279 (387)
Q Consensus 271 kVRR~~Pl~ 279 (387)
+|||+.|++
T Consensus 84 ~VRR~~PlP 92 (92)
T 1s29_A 84 MVRRRDPLP 92 (92)
T ss_dssp EEEESSCCC
T ss_pred EEeCCCCCC
Confidence 999999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.92 E-value=1.2e-26 Score=192.33 Aligned_cols=85 Identities=28% Similarity=0.436 Sum_probs=80.2
Q ss_pred CChHHHHHHhhcccccccCCCcCCCHHHHhhhcCCCCCceecccccchhhhHHhhccHHHHHHhhhcccceEEeeccccc
Q 016538 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKI 272 (387)
Q Consensus 193 lt~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedgkkV 272 (387)
.+++++++|++||||||||+||.+|.||+++| +.||||+|++|++|+|||+|+.|++.|++||+.|..|||++||++|
T Consensus 10 ~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kV 87 (101)
T 2cqk_A 10 STEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 87 (101)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEE
T ss_pred CHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCee
Confidence 45778899999999999999999999999997 6899999999999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 016538 273 KRQNPLT 279 (387)
Q Consensus 273 RR~~Pl~ 279 (387)
||+.+++
T Consensus 88 Rr~~~~~ 94 (101)
T 2cqk_A 88 RPSHKRC 94 (101)
T ss_dssp EECCSCC
T ss_pred eeCCCCC
Confidence 9997654
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=134.47 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=72.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.++++|||+|||.++|+++|+++|++||.|..|++.+++.++. .||||||+|++.++|++|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH-----------------SLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCc-----------------ccccEEEEECCHHHHHHHHH
Confidence 3567999999999999999999999999999999987653321 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.||+..+.++.|+|.++.
T Consensus 80 ~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 80 TLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HhCCCEECCEEEEEEEee
Confidence 999999999999998874
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=133.40 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=73.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||+.++|+++|+++|++||.|..|+|.++..++. .||||||+|++.++|++||+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK-----------------HLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987753321 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
||+..+.++.|+|.++..
T Consensus 68 lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp HTTCEETTEECEEEECST
T ss_pred hCCCEECCeEEEEEECCC
Confidence 999999999999999864
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=123.80 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=71.6
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATG-----------------KSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997664322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..++++.|+|.++..+
T Consensus 68 l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HTTCEETTEECEEEEEC--
T ss_pred cCCCEECCeEEEEEecCCC
Confidence 9999999999999998765
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-16 Score=123.54 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=73.4
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG-----------------RSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSC-----------------CCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCC-----------------ceeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764322 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.++.|+|.++..+
T Consensus 67 l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp HTTCCSSSSCCEEEESSCC
T ss_pred hCCCeeCCcEEEEEEcccc
Confidence 9999999999999998754
No 8
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.1e-16 Score=125.94 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=75.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++..++.++ ..+|||||+|++.++|++|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-----------------SEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC-----------------ceeeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997664322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..+.++.|+|.++..++
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHTTCBSSSSBCEEEESEESS
T ss_pred HhcCCEECCcEEEEEeecCCC
Confidence 999999999999999988765
No 9
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=4.1e-16 Score=125.51 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=72.9
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG-----------------RSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTC-----------------CBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999999999999999997654322 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeccC
Q 016538 368 NDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~rg 386 (387)
++..+.++.|+|.++..++
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTCEETTEECEEEECSCSS
T ss_pred CCCeECCeEEEEEEcCCCC
Confidence 9999999999999987654
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=125.21 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=73.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-----------------RSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSC-----------------SCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997654321 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.++.|+|.++..+
T Consensus 74 l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp HTTCCTTSCCCEEEEEECC
T ss_pred hCCCEECCeEEEEEECCCC
Confidence 9999999999999998754
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.5e-16 Score=124.68 Aligned_cols=83 Identities=25% Similarity=0.203 Sum_probs=73.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTK-----------------KPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTC-----------------CCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997654221 137999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp HTTTEESSSCEEEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 99999999999999998754
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=8.9e-17 Score=129.32 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=69.0
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
+++|||+|||.++|+++|+++|+.|| .|+.|+|++++.++. .||||||+|++.++|++|++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~-----------------~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ-----------------SRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCC-----------------CSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHHh
Confidence 36899999999999999999999999 899999977654322 389999999999999999998
Q ss_pred HcC-CCCCCCceEEEEeecc
Q 016538 367 LND-EGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~-~~~~~~gLrV~L~~~r 385 (387)
+++ ..+.|+.|+|.++..+
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp TTTEEEETTEEEEEECCCSC
T ss_pred cCCCeEECCEEEEEEEcCCC
Confidence 754 4577888999887654
No 13
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=2.1e-16 Score=126.10 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=67.5
Q ss_pred eeeeeecCCCcccHHHHHHHHhccC--CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG--~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.+|||+|||.++|+++|+++|+.|| .|..|++.+++.++. .||||||+|++.++|++|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~-----------------~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCC-----------------EEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCc-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999 999999987653321 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
||+..+.++.|+|.++..
T Consensus 65 l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp GGGSCSSSCCCEECCC--
T ss_pred cCCCeeCCEEEEEEECCC
Confidence 999999999999988764
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=7e-16 Score=120.20 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=71.7
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
.+|||+|||.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|++.++|++|++.|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----------------SSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CccceEEEEECCHHHHHHHHHHhc
Confidence 589999999999999999999999999999997664322 138999999999999999999999
Q ss_pred CCCCCCCceEEEEeecc
Q 016538 369 DEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~~r 385 (387)
+..+.++.|+|.++..+
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999988765
No 15
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=2.7e-16 Score=128.36 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=72.0
Q ss_pred hceeeeeecCCC------cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 016538 287 QSRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (387)
Q Consensus 287 ~~rTVyV~nLP~------d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (387)
..++|||+|||. ++++++|+++|++||.|..|+|.+++.++. .||||||+|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK-----------------TKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc-----------------cceEEEEEECCHHHH
Confidence 468999999999 999999999999999999999976643221 389999999999999
Q ss_pred HHHHHHHcCCCCCC-CceEEEEeec
Q 016538 361 EKAIAELNDEGNWR-SGLRVRLMLR 384 (387)
Q Consensus 361 ~kAv~~Ln~~~~~~-~gLrV~L~~~ 384 (387)
++|++.||+..+.+ +.|+|.++..
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHhCCcccCCCeEEEEEECch
Confidence 99999999999998 9999998754
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=3.6e-16 Score=130.72 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=70.9
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..+|||+|||.++|+++|+++|++||.|..|+|++++. ..||||||+|++.++|++||+.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 56899999999999999999999999999999976531 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEeecc
Q 016538 368 NDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~r 385 (387)
++..+.++.|+|..+..+
T Consensus 66 ~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp TTCEETTEECEEEESSCC
T ss_pred CCCEECCEEEEEEECCCc
Confidence 999999999999987654
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=123.82 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=72.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ-----------------RPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTC-----------------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CCCceEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997664322 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|.++..+
T Consensus 71 -~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 71 -MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp -HCCCBSSSCBCEEEECCCC
T ss_pred -hCCCEECCeEEEEEECCCC
Confidence 9999999999999998754
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=1.9e-15 Score=140.00 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=68.0
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.++|||+|||.++|+++|+++|+.|| .|..|+++.. .+|||||+|++.++|++|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999999 9999998531 167999999999999999999
Q ss_pred HcCCCCC-CCceEEEEeec
Q 016538 367 LNDEGNW-RSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~-~~gLrV~L~~~ 384 (387)
|++..+. ++.|+|.++..
T Consensus 209 l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HTTCBSSSSCBCEEEECSS
T ss_pred HCCCccCCCCeEEEEEecC
Confidence 9999998 88999998754
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=124.70 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=73.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++..++ ++ ..+|||||+|++.++|++|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AG-----------------KPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TS-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CEEeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653 11 137999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..++++.|+|.++..+
T Consensus 77 ~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 77 KMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp HHTTEESSSCEEEEEECCCC
T ss_pred HhCCCEECCEEEEEEECCCC
Confidence 99999999999999998754
No 20
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=1e-15 Score=125.05 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=72.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|+|++++.++ ..||||||+|++.++|++|++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG-----------------MHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSC-----------------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999997664322 138999999999999999999
Q ss_pred HHcCCCC---CCCceEEEEeecc
Q 016538 366 ELNDEGN---WRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~---~~~gLrV~L~~~r 385 (387)
.|++..+ .++.|+|.++..+
T Consensus 74 ~l~g~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 74 ALHEQKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp HHTTTCCCTTCSSCCEEEECCCC
T ss_pred HhcCCcccCCCCceEEEEECCcc
Confidence 9999887 7788999988653
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=128.09 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=73.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++..++ ++ ..+|||||+|++.++|++|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TS-----------------KSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TT-----------------TCCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-----------------CcccEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998664 11 137999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCS
T ss_pred HhCCCEECCEEEEEEECCCC
Confidence 99999999999999998754
No 22
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=5.7e-16 Score=121.24 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=70.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.++..++ ..+|||||+|++.++|++|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTT-----------------EECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCC-----------------ccccEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999986653221 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
.||+..+.++.|+|.++
T Consensus 68 ~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 68 NMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCcEEEEEEc
Confidence 99999999999999875
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=9.2e-16 Score=127.25 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=73.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG-----------------KSKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999998664221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..++++.|+|.++..+
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 76 QMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp HTTTCEETTEECEEEESSCC
T ss_pred HhCCCEECCEEEEEEEccCC
Confidence 99999999999999998754
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=124.09 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=72.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCC-CCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p-~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ +.++ ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTG-----------------AHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSC-----------------SSCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCC-----------------CcCceEEEEECCHHHHHHHH
Confidence 45789999999999999999999999999999999755 2221 13899999999999999999
Q ss_pred HHH-cCCCCCCCceEEEEeecc
Q 016538 365 AEL-NDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~L-n~~~~~~~gLrV~L~~~r 385 (387)
+.| |+..+.++.|+|.++..+
T Consensus 76 ~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 76 NALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp HHHHTCCBSSSCBCEEEECCCC
T ss_pred HHhccCCeECCCEEEEEeCCCC
Confidence 999 899999999999998754
No 25
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=123.27 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=71.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeE--------EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~--------Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
...++|||+|||.++|+++|+++|++||.|.. |++..++.++ ..+|||||+|++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~G~afV~f~~~ 73 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-----------------KLKGEATVSFDDP 73 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC-----------------SEEEEEEEEBSSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCC-----------------CeeeEEEEEECCH
Confidence 35689999999999999999999999999999 9987664322 1389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEe
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L~ 382 (387)
++|++|++.||+..+.++.|+|.++
T Consensus 74 ~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 74 PSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEec
Confidence 9999999999999999999999876
No 26
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.7e-16 Score=128.51 Aligned_cols=83 Identities=27% Similarity=0.292 Sum_probs=72.7
Q ss_pred hhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 284 ~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
++...++|||+|||.++|+++|+++|+.||.|..|+|+.++.++ ..+|||||+|++.++|++|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-----------------RSKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSS-----------------SCCCCEEEEESCGGGHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCC-----------------ccCcEEEEEeCcHHHHHHH
Confidence 44678999999999999999999999999999999997664322 1378999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeec
Q 016538 364 IAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~ 384 (387)
| .||+..++++.|+|.++..
T Consensus 84 ~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 84 I-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp H-HHTTEEETTEEEEEEEHHH
T ss_pred H-HcCCCEeCCeEEEEEecCC
Confidence 9 9999999999999988753
No 27
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.2e-15 Score=125.57 Aligned_cols=84 Identities=24% Similarity=0.331 Sum_probs=74.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++..++.++ ..+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTS-----------------SBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999987654221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..++++.|+|.++..++
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp HHTTCEETTEECEEEESEESS
T ss_pred HcCCCEECCcEEEEEEcccCC
Confidence 999999999999999987654
No 28
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=126.30 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=69.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..+++|||+|||.++|+++|+++|+.||.|.+|++++. ||+|||||++.++|++|++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----------------------KRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999998531 7899999999999999999
Q ss_pred HHcCCC--CCCCceEEEEeeccC
Q 016538 366 ELNDEG--NWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~--~~~~gLrV~L~~~rg 386 (387)
.|++.. +.|+.|+|.+...+.
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHSCEEETTEEEEEEECSCSC
T ss_pred HhcCCCceeCCcEEEEEeccccc
Confidence 999875 568889999887664
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=125.58 Aligned_cols=83 Identities=27% Similarity=0.306 Sum_probs=73.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTG-----------------QSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCC-----------------ceeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997664322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..++++.|+|.++..+
T Consensus 76 ~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 76 GVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp HTTTCEETTEECEEEESSCC
T ss_pred HcCCCeeCCcEEEEEECCCC
Confidence 99999999999999998754
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=126.46 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=74.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETG-----------------RSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTT-----------------EEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999998664321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..+.++.|+|.++..|.
T Consensus 87 ~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 87 QLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHTTCCSSSSCCEEECSCSSC
T ss_pred HcCCCEECCEEEEEEEcccCC
Confidence 999999999999999987663
No 31
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=8e-16 Score=131.73 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=74.3
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+|||.++|+++|+++|+.||.|+.|+|++++.++ ..||||||+|++.++|++|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETR-----------------QSRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTT-----------------EEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999999999998764321 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.||+..++++.|+|.++..+
T Consensus 102 ~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 102 AGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp HHTTTEECSSCEEEEEESSCC
T ss_pred HHhCCCEECCeEEEEEECCCC
Confidence 999999999999999998753
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=7.8e-16 Score=127.85 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-----------------LSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC-----------------CcCccEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998764321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 86 ~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp HHTTCEETTEECEEECCCCS
T ss_pred HcCCCEECCEEEEEEEcCCC
Confidence 99999999999999988754
No 33
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.6e-16 Score=124.85 Aligned_cols=83 Identities=30% Similarity=0.365 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-----------------KPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTT-----------------EEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999998664321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 69 ~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 69 NLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp HSSSBSCSSSCBEEEETTCT
T ss_pred HhCCCeeCCcEEEEEeCCCc
Confidence 99999999999999987654
No 34
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=124.36 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=73.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTG-----------------QHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------cCCcEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999987654221 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 76 ~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 76 IMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp HSSSCBCSSCBCEEEETTTT
T ss_pred HhCCCeECCeEEEEEECCCC
Confidence 99999999999999988653
No 35
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=8.8e-16 Score=121.18 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=72.0
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|+
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG-----------------HPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSS-----------------SCCEEEEEEESSTHHHHHHG
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 3567899999999999999999999999999999998664322 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++..+.++.|+|..+..
T Consensus 66 -~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 66 -ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp -GGTTCEETTEECEEEETTT
T ss_pred -hcCCCEECCcEEEEEEccC
Confidence 8999999999999988754
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=125.40 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=69.9
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+...++|||+|||.++|+++|+++|+.||.|..|+|++++. + ..||||||+|++.++|++|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g-----------------~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-----------------AFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-T-----------------SCCCEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-C-----------------CCccEEEEEECCHHHHHHHH
Confidence 35678999999999999999999999999999999987642 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 016538 365 AELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~ 382 (387)
+ +++..+.++.|+|...
T Consensus 70 ~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 70 E-TPGQKYKETDLLILFK 86 (103)
T ss_dssp T-SSCCCCTTTTCEEEEH
T ss_pred H-cCCCEECCEEEEEEEc
Confidence 9 8999999999999864
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.4e-16 Score=123.83 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=72.5
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEE-EEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~V-rl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.++|+++|+++|+.||.|..| ++.+++.++ ..+|||||+|++.++|++|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG-----------------NSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTC-----------------SCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCC-----------------CcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 987653222 137999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp TTTTCEETTEECEEEESCCC
T ss_pred HcCCCEECCEEEEEEEeccc
Confidence 99999999999999998754
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=122.28 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=70.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++..++.++ ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-----------------KSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSC-----------------CCTTCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997654321 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
.||+..++++.|+|.++
T Consensus 77 ~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 77 AINNKQLFGRVIKASIA 93 (94)
T ss_dssp HTTTEEETTEEEEEEEC
T ss_pred HcCCCeeCCcEEEEEec
Confidence 99999999999999875
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=9.7e-16 Score=124.69 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=72.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.++ ..+|||||+|++.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTK-----------------APRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CCCeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999987654321 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++..+.++.|+|.++..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARY 92 (103)
T ss_dssp HHSSCCBTTBCCEEEECSS
T ss_pred HcCCCEECCcEEEEEECCc
Confidence 9999999999999999874
No 40
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.8e-16 Score=129.24 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=68.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||+++|+++|+++|+.||.|+.|+|+++ ||||||||++.++|++|++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999632 6899999999999999999
Q ss_pred HHcC--CCCCCCceEEEEeeccC
Q 016538 366 ELND--EGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~--~~~~~~gLrV~L~~~rg 386 (387)
.|++ ..+.++.|+|.++..+.
T Consensus 71 ~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 71 YYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHTTSCCEETTEECCBCCCSSSS
T ss_pred HhccCCceECCEEEEEEEcCCCC
Confidence 9874 56778889998877653
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=121.84 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=71.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 75 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKE 75 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CcccEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997664321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|++..+.++.|+|.++.
T Consensus 76 ~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 76 RANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHTTEEETTEEEEEECCS
T ss_pred HhCCCEECCEEEEEEecC
Confidence 999999989989998764
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=126.65 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=67.2
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCC--eeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~--V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
-.||||+|||.++|+++|+++|++||. |..|++.+++.++. .||||||+|++.++|++|++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ-----------------NRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS-----------------CSSEEEEECSSSHHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC-----------------CceEeEEEECCHHHHHHHHH
Confidence 469999999999999999999999995 67888877653321 38999999999999999999
Q ss_pred HHcCCC----CCCCceEEEEee
Q 016538 366 ELNDEG----NWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~----~~~~gLrV~L~~ 383 (387)
.||+.. +.|+.|+|.++.
T Consensus 72 ~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 72 ILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHSSSSCEEETTEEEEEEECC
T ss_pred HhcCCCCCceECCEEEEEEEcc
Confidence 999863 667888888764
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.6e-16 Score=124.93 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=72.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSC-----------------CCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997654322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..++++.|+|.++..+
T Consensus 74 l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred hCCCEECCcEEEEEeCCCC
Confidence 9999999999999998754
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=7e-16 Score=121.31 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=71.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++..+..+++ ..+|||||+|++.++|++|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~----------------~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH----------------LSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEE----------------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCC----------------CCCcEEEEEEecHHHHHHHHHH
Confidence 468999999999999999999999999999999865532110 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.++.|+|.++...
T Consensus 67 l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HTTCEETTEECEEEEECCC
T ss_pred cCCCeECCeEEEEEECCCC
Confidence 9999999999999988643
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=123.41 Aligned_cols=81 Identities=25% Similarity=0.303 Sum_probs=72.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|++++. ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999976531 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp HHTTEEETTEEEEEEECCCT
T ss_pred HhCCCCcCCCeEEEEECCCC
Confidence 99999999999999988754
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=124.51 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=72.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTE-----------------HSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-----------------CBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CCccEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997664322 138999999999999999999
Q ss_pred HHc------CCCCCCCceEEEEeecc
Q 016538 366 ELN------DEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln------~~~~~~~gLrV~L~~~r 385 (387)
.|+ +..+.++.|+|.++..+
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred HhccccccCCcEEcCEEEEEEECCCC
Confidence 999 88888999999988754
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=2.8e-15 Score=122.21 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=72.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|..+.+ + ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-G-----------------SSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-S-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CcCcEEEEEeCCHHHHHHHHH
Confidence 3578999999999999999999999999999999976531 1 138999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEeecc
Q 016538 366 ELNDEGNWR---SGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~---~gLrV~L~~~r 385 (387)
.|++..+.+ +.|+|.++..+
T Consensus 75 ~l~g~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 75 ALHGSQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp HHSSCCCCTTCSSCCEEEESCSS
T ss_pred HHcCCccCCCCCccEEEEECccC
Confidence 999998877 88999998754
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=121.53 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=71.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.++++ + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-G-----------------KPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CCceEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999976532 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|++..++++.|+|.++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 999999999999998764
No 49
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=124.63 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=67.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|+|.+. ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998531 68999999999999999999
Q ss_pred HcCCC--CCCCceEEEEeecc
Q 016538 367 LNDEG--NWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~--~~~~gLrV~L~~~r 385 (387)
|++.. +.++.|+|.++..+
T Consensus 71 l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 71 AADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp HHHSCCBSSSSBCEEEECSSS
T ss_pred hccCCceECCEEEEEEEccCc
Confidence 97653 77889999998754
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=1.8e-15 Score=129.62 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.+++.++. .+|||||+|++.++|++||+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR-----------------SRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC-----------------CCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 107 ~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 107 RANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHTTCCSSSSCCEESCCSSS
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 99999999999999987654
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=122.84 Aligned_cols=81 Identities=28% Similarity=0.336 Sum_probs=72.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|..+ ++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g-----------------~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG-----------------RSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC-----------------CcCEEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999754 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 74 EMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp HHTTCBSSSSBCEEEECSSC
T ss_pred HhCCCEeCCcEEEEEEeccc
Confidence 99999999999999998754
No 52
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=128.55 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=69.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||+++|+++|+++|+.||.|+.|+|+++ ||||||||++.++|++|++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998632 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEeeccC
Q 016538 367 LND--EGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 367 Ln~--~~~~~~gLrV~L~~~rg 386 (387)
|++ ..+.++.|+|.++..+.
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSS
T ss_pred hccCCceECCeEEEEEEccCCC
Confidence 984 56888999999987654
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.7e-15 Score=126.31 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|+|..++.++ ..+|||||+|++.++|++||+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTS-----------------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999987654221 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHTTCBSSSSBCEEEESEES
T ss_pred HhCCCeeCCeEEEEEEecCC
Confidence 99999999999999998754
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=126.67 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=67.3
Q ss_pred hceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||. ++|+++|+++|+.||.|..|+|+++ ||||||||++.++|++||+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 9999999999999999999998532 5789999999999999999
Q ss_pred HHcCCC--CCCCceEEEEeec
Q 016538 366 ELNDEG--NWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~--~~~~gLrV~L~~~ 384 (387)
.|++.. +.++.|+|.++.+
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HHHHSCCEETTEECEEEEECC
T ss_pred HHcCCCceECCcEEEEEECCC
Confidence 998653 7788999999874
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=123.02 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=72.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCee-EEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~-~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||.++|+++|+++|++||.|. .|++++++.++ ..+|||||+|++.++|++|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTG-----------------IPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSC-----------------CEEEEEEEECSCHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCC-----------------CcCCEEEEEeCCHHHHHHHH
Confidence 3568999999999999999999999999999 99998765322 13899999999999999999
Q ss_pred HHHcCCCCCCCc----eEEEEeecc
Q 016538 365 AELNDEGNWRSG----LRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~g----LrV~L~~~r 385 (387)
+.||+..+.++. |+|..+...
T Consensus 70 ~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 70 HKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHcCCccCCCCcceeEEEeecCCC
Confidence 999999988888 888887643
No 56
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=9.4e-16 Score=127.76 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=71.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|+|.+++.++ ..+|||||+|++.++|++|++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTS-----------------LSKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSS-----------------CCCCEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997664322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
.||+..++++.|+|.++
T Consensus 101 ~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 101 AMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HCCCCEETTEECCEEEC
T ss_pred HcCCCEECCEEEEEEec
Confidence 99999999999999875
No 57
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.9e-15 Score=121.08 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=72.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.++.. ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999976531 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 74 ~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 74 KLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp HHTTCEETTEECEEEECCSS
T ss_pred HhCCCEECCEEEEEEEcccC
Confidence 99999999999999998765
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=2.7e-15 Score=122.66 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=71.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.++. ++ ..+|||||+|++.++|++|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SG-----------------RSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TS-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998664 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|++..+.++.|+|.++.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 999999999999999874
No 59
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=123.10 Aligned_cols=85 Identities=27% Similarity=0.311 Sum_probs=72.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.+++...+ .+ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g-------t~-------~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAG-------VL-------LSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTC-------CE-------EEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-------Cc-------CcccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999976532100 00 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|.++..+
T Consensus 70 l~g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERA 88 (98)
T ss_dssp STTCEETTEECEEECSSCS
T ss_pred hCCCeeCCeEEEEEEccCC
Confidence 9999999999999988654
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=126.04 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=72.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCee--------EEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~--------~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
...++|||+|||.++|+++|+++|+.||.|. .|+|..++.++ ..+|||||+|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~~~ 75 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG-----------------KPKGDATVSYEDP 75 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC-----------------SBCSEEEEEBSSH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC-----------------CeeeEEEEEECCH
Confidence 4678999999999999999999999999998 58887653221 1389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeecc
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L~~~r 385 (387)
++|++||+.||+..+.++.|+|.++..+
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 76 PTAKAAVEWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred HHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence 9999999999999999999999988754
No 61
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=116.70 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=67.4
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
++|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSS-----------------SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCC-----------------CcCceEEEEEcCHHHHHHHHHhCC
Confidence 589999999999999999999999999999997654322 138999999999999999999999
Q ss_pred CCCCCCCceEEEEe
Q 016538 369 DEGNWRSGLRVRLM 382 (387)
Q Consensus 369 ~~~~~~~gLrV~L~ 382 (387)
..+.++.|+|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 8888999999876
No 62
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=117.58 Aligned_cols=75 Identities=23% Similarity=0.233 Sum_probs=69.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++. ||||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999984 5799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCC
T ss_pred HhcCCccCCcEEEEEECCCC
Confidence 99999999999999988654
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=125.13 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.+++. ..+|||||+|++.++|++|++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHHH
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999975421 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..++++.|+|.++..+.
T Consensus 88 ~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 88 KLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HHTTCEETTEECEEEECCCSC
T ss_pred HcCCCEECCEEEEEEECCCCc
Confidence 999999999999999987764
No 64
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=133.42 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=71.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccC--CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG--~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++|||+||+.++|+++|+++|+.|| .|..|++++++.++. .||||||+|++.++|++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ-----------------SKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999 999999987754322 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.||+..+.++.|+|.++..
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 99999999999999998754
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=123.13 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=70.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|+|..++ ..+|||||+|++.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999985321 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++..+.++.|+|.++..
T Consensus 80 ~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHTTCEETTEECEEECCCC
T ss_pred HcCCCEECCeEEEEEEccc
Confidence 9999999999999998864
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=120.46 Aligned_cols=79 Identities=20% Similarity=0.181 Sum_probs=70.9
Q ss_pred hceeeeeecCCCcccHHHHH----HHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~----e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
..++|||+|||.++|+++|+ ++|++||.|..|+|..++. . ||||||+|++.++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-------------------~-rg~afV~f~~~~~A~~ 67 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-------------------Y-QLKAVVQMENLQDAIG 67 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-------------------T-TCCEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-------------------C-CeEEEEEECCHHHHHH
Confidence 46799999999999999999 9999999999999975531 1 6789999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeecc
Q 016538 363 AIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~r 385 (387)
|++.||+..+.++.|+|.++..+
T Consensus 68 Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 68 AVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHhCCCEECCeEEEEEEcCCC
Confidence 99999999999999999998654
No 67
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-15 Score=123.17 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=69.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|+|.. .+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 4568999999999999999999999999999998742 26789999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.||+..+.++.|+|.++..
T Consensus 65 ~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHTTCBSSSSBCEEEEEET
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999999999999998764
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=125.10 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=71.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++||+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai~ 77 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG-----------------KSRGYGFVTMADRAAAERACK 77 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSC-----------------CCCSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999997664322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++ .+.++.|+|.++..
T Consensus 78 ~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 78 DPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp CSSC-EETTEECEEEESTT
T ss_pred hCCC-cCCCEEEEEEEccc
Confidence 9998 78888999999843
No 69
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=118.88 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=69.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|++.. .||||||+|++.++|++|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999842 167999999999999999999
Q ss_pred HcCCCCC--CCceEEEEeecc
Q 016538 367 LNDEGNW--RSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~--~~gLrV~L~~~r 385 (387)
||+..+. ++.|+|.++..+
T Consensus 73 l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 73 MRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HTTCBCSSSSCBCEEEECCCC
T ss_pred HCCCEeCCCCcEEEEEECCCC
Confidence 9999988 889999988754
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=122.88 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=67.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|+|.++ ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998532 78999999999999999998
Q ss_pred Hc--CCCCCCCceEEEEeeccC
Q 016538 367 LN--DEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 367 Ln--~~~~~~~gLrV~L~~~rg 386 (387)
|+ +..+.++.|+|.++..+.
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHSCCEETTEECEEEECSCSS
T ss_pred hccCCceECCcEEEEEEcCccc
Confidence 86 455778899999987653
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=4.7e-15 Score=117.88 Aligned_cols=81 Identities=25% Similarity=0.250 Sum_probs=71.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++. + ..+|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--g-----------------~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--G-----------------KSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS--S-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC--C-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997531 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 67 MMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp HHTTCCBTTBCCCCEECSCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 99999999999999988654
No 72
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=1.3e-15 Score=120.79 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=68.9
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.+ |++|++.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETK-----------------KPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSC-----------------CCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCC-----------------CcceEEEEEECCHH-HHHHHHHhC
Confidence 689999999999999999999999999999997664322 13899999999999 999999999
Q ss_pred CCCCCCCceEEEEeecc
Q 016538 369 DEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~~r 385 (387)
+..+.++.|+|.++..+
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99999999999988653
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=121.67 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhc-cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~-fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||.++|+++|+++|+. ||.|..|+|++++ ++ ..+|||||+|++.++|++|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TG-----------------VSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TC-----------------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CccceEEEEECCHHHHHHHH
Confidence 35689999999999999999999999 9999999998664 21 13899999999999999999
Q ss_pred HHHcCCC-CCCCceEEEEeecc
Q 016538 365 AELNDEG-NWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~-~~~~gLrV~L~~~r 385 (387)
+.|++.. +.++.|+|.++..+
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCC
T ss_pred HHccCCcccCCEeEEEEEccCC
Confidence 9999988 88999999988643
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=120.66 Aligned_cols=77 Identities=27% Similarity=0.318 Sum_probs=70.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.++ ||||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------------------kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------------------KGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999998532 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 70 ~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 70 ELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHTTCCBTTBCCEEEESSCC
T ss_pred HhCCCEeCCceEEEEEcCCC
Confidence 99999999999999998754
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=4.6e-15 Score=129.75 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=72.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.++ ..+|||||+|++.++|++||+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK-----------------TACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998764322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++..+.++.|+|.++..
T Consensus 100 ~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HTTTSEETTEECEEEEESC
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999999999999999864
No 76
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=2.8e-15 Score=118.13 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=67.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG-----------------RSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccccEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999998764322 138999999999999999996
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
+++..++++.|+|..+
T Consensus 72 -~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 72 -QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp -SSCEEETTEEEEEEEC
T ss_pred -hCCCEECCEEEEEEeC
Confidence 5777788888888754
No 77
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=122.71 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=71.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..++++.++.++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSS-----------------CEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCC-----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999999999877665543221 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeccC
Q 016538 367 LNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~rg 386 (387)
|++..+.++.|+|.++..+.
T Consensus 77 l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp TTTCEETTEECEEEESSCSS
T ss_pred hCCCeeCCeEEEEEEcCCCC
Confidence 99999999999999987653
No 78
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=7.8e-15 Score=123.51 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=72.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++ ++ ..+|||||+|++.++|++|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SG-----------------RSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SS-----------------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CC-----------------CEeeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998654 21 137999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++...
T Consensus 95 ~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 95 QYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHTTEESSSCEEEEEEECCT
T ss_pred HcCCCEECCcEEEEEEeCCC
Confidence 99999999999999998653
No 79
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=122.46 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=71.5
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|+|+++++ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-G-----------------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-C-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999976532 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
|++..+.++.|+|.++..
T Consensus 76 l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HTTCEETTEECEEEECSC
T ss_pred hCCCEeCCCEEEEEEccc
Confidence 999999999999998763
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.2e-15 Score=122.05 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=72.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++ ++ ..+|||||+|++.++|++|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SG-----------------TSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SS-----------------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997653 11 138999999999999999999
Q ss_pred HHcCCCC--------CCCceEEEEeeccC
Q 016538 366 ELNDEGN--------WRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~--------~~~gLrV~L~~~rg 386 (387)
.||+..+ +++.|+|.++..++
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGPSS 113 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCCSC
T ss_pred HhCCCEEcCCccccCCCCceeEEccCCCC
Confidence 9999988 67789999987653
No 81
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=6.2e-15 Score=119.71 Aligned_cols=76 Identities=20% Similarity=0.332 Sum_probs=69.9
Q ss_pred hhceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||. ++|+++|+++|+.||.|..|++. +|||||+|++.++|++|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 4678999999998 99999999999999999999982 689999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 016538 365 AELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~rg 386 (387)
+.|++..+.++.|+|.++..++
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 75 EXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHHTTSEETTEECEEEECCCCC
T ss_pred HHcCCCEECCEEEEEEecCCCC
Confidence 9999999989999999987654
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=3.6e-15 Score=123.61 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=69.2
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg-----------------~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTC-----------------CCTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCC-----------------CcCcEEEEEECCHHHHHHHH
Confidence 3567899999999999999999999999999999997664322 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.++ ..+.++.|+|.++..+
T Consensus 85 ~~~~-~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 85 AQSR-HELDSKTIDPKVAFPR 104 (109)
T ss_dssp HSSC-EEETTEEEEEEECCCC
T ss_pred HHCC-CcCCCEEEEEEEccCC
Confidence 9765 7788889999988755
No 83
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=3.5e-15 Score=120.89 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=67.7
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
+..|||+||+..+|+++|+++|++||.|.++++.. .||||||||.++++|++|++.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 45799999999999999999999999999999853 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 016538 368 NDEGNWRSGLRVRLML 383 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~ 383 (387)
|+..+.++.|+|..+.
T Consensus 64 n~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 64 NNCVLANTTIFAESPS 79 (89)
T ss_dssp TTEEETTEEEEEECCC
T ss_pred cCCEECCcEEEEEECC
Confidence 9999999999998874
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=4.1e-15 Score=124.88 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=72.8
Q ss_pred hhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 284 ~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
.....++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSG-----------------HPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTS-----------------SCEEEEEEEESSHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcccEEEEEECCHHHHHHH
Confidence 44578999999999999999999999999999999998764322 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeec
Q 016538 364 IAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+ .|++..+.++.|+|.++..
T Consensus 95 ~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 95 V-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp H-TTTTCEETTEECEEEESSC
T ss_pred H-hcCCCeECCeEEEEEECCC
Confidence 9 7999999999999998754
No 85
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=122.44 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=70.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ +|||||+|++.++|++|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999999999999998632 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..++++.|+|.++..+
T Consensus 80 ~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 80 SVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp HHTTCEETTEECEEECCCCC
T ss_pred HcCCCEECCcEEEEEecCCC
Confidence 99999999999999987654
No 86
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.3e-15 Score=126.01 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=67.7
Q ss_pred hceeeeeecCCCc-ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d-~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.+ +|+++|+++|+.||.|..|+|.+ .||||||||++.++|++|++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4689999999998 99999999999999999999852 17899999999999999999
Q ss_pred HHcC--CCCCCCceEEEEeecc
Q 016538 366 ELND--EGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~--~~~~~~gLrV~L~~~r 385 (387)
.|++ ..+.++.|+|.++.++
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECSC
T ss_pred HhccCCceECCEEEEEEECccc
Confidence 9875 3478899999998754
No 87
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=116.89 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=63.7
Q ss_pred ceeeeeecCCCcc------cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 288 ~rTVyV~nLP~d~------T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
+++|||+|||.++ |+++|+++|++||.|..|+|.+ .++ ..||||||+|++.++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g-----------------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTT-----------------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCC-----------------cEeEEEEEEECCHHHHH
Confidence 3799999999999 7899999999999999999852 111 13899999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEE
Q 016538 362 KAIAELNDEGNWRS-GLRV 379 (387)
Q Consensus 362 kAv~~Ln~~~~~~~-gLrV 379 (387)
+|++.||+..+.++ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 99999999999888 7876
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=121.29 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=70.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.|| |..|+|.+++.+. + ..+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---------g-------~~~g~afV~f~~~~~a~~A~- 74 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---------E-------RLKGFGYAEFEDLDSLLSAL- 74 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCT---------T-------SBCSCEEEEESSHHHHHHHH-
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCC---------C-------CcCeEEEEEECCHHHHHHHH-
Confidence 3568999999999999999999999999 9999997654320 0 13789999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 75 SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp GGGTCEETTEECEEEECCCC
T ss_pred hcCCCEeCCcEEEEEEccCC
Confidence 89999999999999998754
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=124.15 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=73.8
Q ss_pred hhceeeeeecCCCcccHHHHH---HHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~---e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
...++|||+|||.++|+++|+ ++|++||.|..|+|..++..+. ++ ..+|||||+|++.++|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~-------~~-------~~~G~afV~f~~~~~A~~ 78 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG-------SQ-------GPSASAYVTYIRSEDALR 78 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS-------SS-------CCCEEEEEEESSHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc-------cC-------CCCeEEEEEECcHHHHHH
Confidence 456899999999999999999 9999999999999976643221 11 137999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeecc
Q 016538 363 AIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~r 385 (387)
||+.||+..+.++.|+|.++..+
T Consensus 79 Ai~~lng~~~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 79 AIQCVNNVVVDGRTLKASLGTTK 101 (111)
T ss_dssp HHHHHTTEEETTEEEEEESCCCC
T ss_pred HHHHhCCCEECCEEEEEEecccc
Confidence 99999999999999999988765
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.57 E-value=4e-15 Score=114.06 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=65.5
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++ |++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTN-----------------RHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSST-----------------TSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHH-CCC
Confidence 58999999999999999999999999999987654221 138999999999999999998 999
Q ss_pred CCCCCCceEEEEe
Q 016538 370 EGNWRSGLRVRLM 382 (387)
Q Consensus 370 ~~~~~~gLrV~L~ 382 (387)
..+.++.|+|..+
T Consensus 63 ~~~~g~~l~v~~A 75 (75)
T 2mss_A 63 HEINNKMVECKKA 75 (75)
T ss_dssp CCSSSCCCEEECC
T ss_pred CEECCEEEEEEeC
Confidence 9999999998753
No 91
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=118.00 Aligned_cols=75 Identities=27% Similarity=0.233 Sum_probs=69.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++. ++||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999983 4589999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 63 ~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 63 GLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp HHTTEEETTEEEEEEESSCC
T ss_pred HhCCCeeCCcEEEEEEccCC
Confidence 99999999999999998654
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=120.69 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=70.5
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCC-eeEEEEe-CCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~-V~~Vrl~-~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++|||+|||.++|+++|+++|+.||. |..|++. .++.++ ..||||||+|++.++|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM-----------------KNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTT-----------------TTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCC-----------------CcCcEEEEEecCHHHHHHHH
Confidence 4689999999999999999999999998 9999886 343211 13899999999999999999
Q ss_pred HHHc--CCCCCCCceEEEEeecc
Q 016538 365 AELN--DEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln--~~~~~~~gLrV~L~~~r 385 (387)
+.|+ +..++++.|+|.++..+
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSS
T ss_pred HHhhCCCceecCCeEEEEEcCCC
Confidence 9996 57888999999998754
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=122.08 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=69.2
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCC-CCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ-TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~-~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
....++|||+|||.++|+++|+++|+.|| |..|+|.+++ .++ ..+|||||+|++.++|++|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g-----------------~~~g~afV~f~~~~~a~~A 77 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPE-----------------RLKGFGYAEFEDLDSLLSA 77 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTC-----------------CCCSCEEEEECCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCC-----------------ccCeEEEEEECCHHHHHHH
Confidence 34679999999999999999999999999 9999997653 111 1388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 016538 364 IAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+ .|++..+.++.|+|.++..+
T Consensus 78 i-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 78 L-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp H-HTTTCCBTTBCCCCEECCCS
T ss_pred H-hcCCCEECCeEEEEEeccCC
Confidence 9 89999999999999988654
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=5.1e-15 Score=120.57 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=71.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.|| |..|+|++++.++ ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~- 73 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTD-----------------KFKGFCYVEFDEVDSLKEAL- 73 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHG-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCC-----------------ccceEEEEEECCHHHHHHHH-
Confidence 3568999999999999999999999998 9999998764322 13899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 74 TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp GGTTCEETTEECEEEECCCC
T ss_pred hhCCCeECCeEEEEEEecCC
Confidence 89999999999999988754
No 95
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.1e-14 Score=117.46 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=68.8
Q ss_pred hhceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||. ++|+++|+++|+.||.|..|++. ||||||+|++.++|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 4578999999998 99999999999999999999982 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.|++..+.++.|+|.++..+
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECC
T ss_pred HHcCCCeeCCcEEEEEEcCcC
Confidence 999999999999999998643
No 96
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-15 Score=117.82 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=66.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|++..++.++ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-----------------KCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSC-----------------SCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEE
Q 016538 367 LNDEGNWRSGLRVR 380 (387)
Q Consensus 367 Ln~~~~~~~gLrV~ 380 (387)
||+..+.++-|+|.
T Consensus 67 l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 67 LKASGVQAQMAKQS 80 (85)
T ss_dssp HHHHTCCEESCCSS
T ss_pred hcCCeEeeEEEeec
Confidence 99988877666654
No 97
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6e-15 Score=117.29 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=68.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++. ++||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999984 4589999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 62 ~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 62 QLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHTTCEETTEECEEEESCCC
T ss_pred HhCCCEECCcEEEEEECCCC
Confidence 99999999999999998653
No 98
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=2.3e-15 Score=120.37 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=69.0
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..++++.++.++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCC-----------------CEeeEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999999999888776543221 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
||+..+.++.|+|.++.
T Consensus 77 l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HTTCEETTEECEEECCC
T ss_pred hCCCeECCcEEEEEecc
Confidence 99999999999998764
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.4e-15 Score=115.82 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=67.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.++ ||||||+|++.++|++|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----------------------kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----------------------QQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----------------------GTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999998632 6899999999999999999
Q ss_pred HH-cCCCCCCCceEEEEe
Q 016538 366 EL-NDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~L-n~~~~~~~gLrV~L~ 382 (387)
.| ++..+.++.|+|.++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 99 888888888888765
No 100
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.5e-15 Score=122.89 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=72.5
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++||
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK-----------------RSRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTS-----------------SCCSEEEEECSSHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC-----------------CcCceEEEEeCCHHHHHHHH
Confidence 3567899999999999999999999999999999998764322 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+. ++..+.++.|+|.++..+
T Consensus 87 ~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 87 AA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TS-CSEEETTEEEEEECCSSC
T ss_pred Hh-CCcEECCEEEEEEECCCC
Confidence 97 888888999999988754
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=5.8e-15 Score=125.73 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=70.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTC-----------------CCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999987654321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 016538 366 ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~ 382 (387)
.|++..+.++.|+|.++
T Consensus 124 ~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 124 NMNESELFGRTIRVNLA 140 (140)
T ss_dssp HSTEEEETTEEEEEEC-
T ss_pred HhCCCEECCEEEEEEeC
Confidence 99999998988998764
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=9.5e-15 Score=118.37 Aligned_cols=75 Identities=28% Similarity=0.260 Sum_probs=68.7
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
++|||+|||.++|+++|+++|++||.|..|++..+ .+|||||+|++.++|++|++.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999998642 27899999999999999999999
Q ss_pred CCCCCCCceEEEEeecc
Q 016538 369 DEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~~r 385 (387)
+..++++.|+|.++..+
T Consensus 59 g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGM 75 (101)
T ss_dssp HSCSSSCCCEEEESSSC
T ss_pred CCeECCcEEEEEEccCC
Confidence 99999999999998653
No 103
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-14 Score=124.56 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=72.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..+++.++..++ ..+|||||+|++.++|++|++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----------------SSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC-----------------CcceEEEEEeCCHHHHHHHHH
Confidence 457899999999999999999999999999999998664322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|++..+.++.|+|.++.
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 999999999999998874
No 104
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.4e-14 Score=120.07 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=70.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.+++. .+|||||+|.+.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--------------------~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE--------------------TRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT--------------------TTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--------------------CCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999975421 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
||+..+.++.|+|.++..
T Consensus 67 l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HTTCBSSSCBCEEEECCH
T ss_pred cCCCEECCeEEEEEEecC
Confidence 999999999999998763
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.2e-15 Score=120.50 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.+ .||||||+|++.++|++|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999852 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
|++..+.++.|+|..+..
T Consensus 83 l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HTTCEETTEECCCCBCCC
T ss_pred hCCCeECCeEEEEEeccC
Confidence 999998888888877654
No 106
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=7e-15 Score=119.93 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=68.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|++. ++||||+|++.++|++|++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999883 56899999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|.++..+
T Consensus 65 l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred HCCCccCCCEEEEEEcCCC
Confidence 9999999999999998654
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.8e-15 Score=117.79 Aligned_cols=78 Identities=26% Similarity=0.312 Sum_probs=68.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|. ++++.. ..+|||||+|++.++|++|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999997 665422 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 75 CLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHTTCCSSSSCCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 99999999999999998765
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=6.4e-15 Score=126.93 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=73.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.++ ..+|||||+|++.++|++|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-----------------ESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSS-----------------SCCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999987654221 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..++++.|+|.++..+
T Consensus 108 ~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp TTTTCCSSSSCCEEEECCCC
T ss_pred HcCCCEECCEEEEEEECCCC
Confidence 99999999999999998643
No 109
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=122.29 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++||+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN-----------------QSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998764322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
. ++..+.++.|+|.++..+
T Consensus 77 ~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp H-CSEEETTEEEBCCCSCCS
T ss_pred h-CCCeECCEEEEEEEccCC
Confidence 8 998888888998887654
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=119.22 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=70.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~-Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||.++|+++|+++|+.||.|.. |+|+++. ++ ..+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-~g-----------------~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-QG-----------------RSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-SS-----------------CBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHH
Confidence 35689999999999999999999999999987 8876542 11 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeccC
Q 016538 365 AELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~rg 386 (387)
+. ++..++++.|+|.+...+.
T Consensus 75 ~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 75 KK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp TT-TTCCSSSSCCEEEEECTTT
T ss_pred Hh-CcchhCCcEEEEEECCHHH
Confidence 97 9999999999998887654
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=1.2e-14 Score=126.82 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=73.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----------------SRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT-----------------SCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999976643221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HSTTEESSSSEEEEEEECCS
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 99999999999999998743
No 112
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=3.5e-14 Score=128.17 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=73.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|++.++|.+|++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG-----------------KHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC-----------------CcCceEEEEecCHHHHHHHHH
Confidence 456899999999999999999999999999999998764322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSC
T ss_pred HccCCEeCCcEEEEEEecCC
Confidence 99999999999999998754
No 113
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.54 E-value=1.2e-14 Score=133.08 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=72.5
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+||+.++|+++|+++|+.||.|..|+|.+++. ..||||||+|++.++|++|+
T Consensus 100 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-------------------~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESSHHHHHHHH
T ss_pred ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-------------------CCceEEEEEeCCHHHHHHHH
Confidence 34567899999999999999999999999999999976531 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.||+..+.++.|+|.++..|
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHTTCEETTEECEEEECCCH
T ss_pred HHhCCCEECCEEEEEEEcCCC
Confidence 999999999999999987643
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=6.5e-15 Score=123.67 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=68.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.++|+++|+++|+.|| .|..+++... ..+|||||+|++.++|++||+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHHHH
Confidence 467999999999999999999999999 9999987321 027899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 86 ~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 86 RLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HTTTEEETTEEEEEEESCC-
T ss_pred HcCCCEECCeEEEEEECCCC
Confidence 99999999999999987643
No 115
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=127.69 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=71.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeE--EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~--Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
...++|||+|||.++|+++|+++|++||.|.. |+|++++.++. .||||||+|++. +|++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~-----------------~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL-----------------NRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSS-----------------BCSCEEEECCHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCC-----------------cceEEEEEECCH-HHHHH
Confidence 45689999999999999999999999999977 99887653321 389999999999 99999
Q ss_pred HHHHcCC----CCCCCceEEEEeec
Q 016538 364 IAELNDE----GNWRSGLRVRLMLR 384 (387)
Q Consensus 364 v~~Ln~~----~~~~~gLrV~L~~~ 384 (387)
++.||+. .+.++.|+|.++..
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCC
Confidence 9999999 88899999998864
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=9.5e-15 Score=121.12 Aligned_cols=76 Identities=29% Similarity=0.358 Sum_probs=69.8
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+|||.++|+++|+++|++||.|..|++. +|||||+|++.++|++|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999999999983 579999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.||+..+.++.|+|.++..+
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp HHHTTCEETTEECEEESCSCC
T ss_pred HHcCCCEECCeEEEEEEecCC
Confidence 999999999999999887654
No 117
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=4.4e-14 Score=122.38 Aligned_cols=80 Identities=29% Similarity=0.336 Sum_probs=69.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|++.++|.+|++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG-----------------RPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997654221 137999999999999999999
Q ss_pred HHcCCCCCC--CceEEEEe
Q 016538 366 ELNDEGNWR--SGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~--~gLrV~L~ 382 (387)
.|++..+.+ +.|+|.++
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 999998866 78888864
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=123.43 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=69.0
Q ss_pred hceeeeeecCCCcccHHHHH----HHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~----e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
..++|||+||+.++++++|+ ++|++||.|..|++... + ..||||||+|++.++|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-------------~-------~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-------------D-------DNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-------------C-------SSCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-------------C-------CcCCEEEEEECCHHHHHH
Confidence 46799999999999998876 79999999999987421 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeecc
Q 016538 363 AIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~r 385 (387)
|++.||+..+.++.|+|.++..+
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHCCCEeCCCEEEEEEccCc
Confidence 99999999999999999998765
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=1.8e-14 Score=127.51 Aligned_cols=84 Identities=24% Similarity=0.331 Sum_probs=73.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|..++.++ ..+|||||+|.+.++|++||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCC-----------------cEeeEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998664322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.||+..++++.|+|.++..++
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHTTCEETTEECEEEESEECC
T ss_pred HhCCCEECCEEEEEEEecCCC
Confidence 999999999999999987543
No 120
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=117.38 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=68.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-----------------HSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CccceEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764322 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
. +..+.++.|+|.++..+
T Consensus 76 ~--~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 76 Q--RHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp S--CEEETTEEEEEECCCTT
T ss_pred c--CCeeCCeEEEEEecCCC
Confidence 4 55677888999888654
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=119.80 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=68.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||+++|+++|+++|+.||.| .|+|++++ ++ ..||||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g-----------------~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DG-----------------RVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SS-----------------CEEEEEEEECSSSHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CC-----------------CEeeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999954 99987664 11 138999999999999999995
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
+|+..+.++.|+|.+...+
T Consensus 74 -~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 74 -KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp -TSSCCSSSSCCEEEEECCC
T ss_pred -hCCCeECCcEEEEEECCCC
Confidence 7999999999999987754
No 122
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=2.7e-14 Score=124.03 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=71.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++ .+|||||+|++.++|++|++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~ 128 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAVR 128 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999532 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..++++.|+|.++..+
T Consensus 129 ~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 129 ELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHSSSCSSSSCCEEEECCCC
T ss_pred HcCCCEECCeEEEEEEcCCC
Confidence 99999999999999998765
No 123
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=2.9e-14 Score=124.21 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=83.9
Q ss_pred cHHHHHHhhhcccceEEeecccccccCCCCcchhhhhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCC
Q 016538 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (387)
Q Consensus 249 d~~~I~eALr~S~~LeVsedgkkVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~ 328 (387)
+.+.+..|| ......+.....+|++..... .....++|||+|||.++|+++|+++|++||.|..|++.++..++
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g- 133 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG- 133 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC-
Confidence 455566666 333344432222333322211 12346899999999999999999999999999999997664221
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
..+|||||+|++.++|++|++.||+..+.++.|+|.++.
T Consensus 134 ----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 134 ----------------LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp ----------------SEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ----------------CcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 138999999999999999999999999999999998763
No 124
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=119.69 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=68.8
Q ss_pred hceeeeeecCCCcc------cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 016538 287 QSRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (387)
Q Consensus 287 ~~rTVyV~nLP~d~------T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (387)
..++|||+|||.++ |+++|+++|++||.|..|+|.+ .++ ..||||||+|++.++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g-----------------~~~G~afV~f~~~~~A 74 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHA 74 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTT-----------------BSCCEEEEEECSSSHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCC-----------------CeeeEEEEEECCHHHH
Confidence 46899999999999 8899999999999999999852 111 1389999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEeec
Q 016538 361 EKAIAELNDEGNWRS-GLRVRLMLR 384 (387)
Q Consensus 361 ~kAv~~Ln~~~~~~~-gLrV~L~~~ 384 (387)
++|++.||+..+.++ .|+|.++..
T Consensus 75 ~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 75 VDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHhCCcccCCCceEEEEEcch
Confidence 999999999999998 899988754
No 125
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=118.77 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=67.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|+|.. .|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999852 16899999999999999999
Q ss_pred HcCCCCCC-----CceEEEEeecc
Q 016538 367 LNDEGNWR-----SGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~-----~gLrV~L~~~r 385 (387)
||+..+.+ +.|+|.++..+
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSCC
T ss_pred HCcCCccCCcCcceEEEEEeCCCC
Confidence 99998888 78999988754
No 126
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=116.04 Aligned_cols=75 Identities=24% Similarity=0.261 Sum_probs=68.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhcc--CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~f--G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
...++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|++.++|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A 67 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEA 67 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHH
Confidence 356899999999999999999999999 999988762 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 016538 364 IAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~r 385 (387)
++.||+..+.++.|+|.++..+
T Consensus 68 ~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 68 MKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp HHHHSSEEETTEEEEEECCCCC
T ss_pred HHHhCCCEeCCcEEEEEECCCC
Confidence 9999999999999999988654
No 127
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=114.76 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=70.6
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.| .|..|+|+++. ++ ..+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA-HG-----------------NKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT-TS-----------------CEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC-CC-----------------CCceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999 99999997652 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|.++..+
T Consensus 69 -~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 -CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp -SCSEEETTEEEEEEEESSC
T ss_pred -hCCceeCCcEEEEEECCcC
Confidence 9999999999999998765
No 128
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=6.6e-15 Score=112.66 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=65.0
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++. ++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai~~-~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN-----------------KRRGFCFITFKEEEPVKKIMEK-KY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCS-----------------SSCCCEEEECSSSHHHHHHHTT-SS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCCEEEEEECCHHHHHHHHHh-CC
Confidence 68999999999999999999999999999986553221 1388999999999999999995 88
Q ss_pred CCCCCCceEEEEe
Q 016538 370 EGNWRSGLRVRLM 382 (387)
Q Consensus 370 ~~~~~~gLrV~L~ 382 (387)
..+.++.|+|.++
T Consensus 63 ~~~~g~~l~v~~a 75 (75)
T 1iqt_A 63 HNVGLSKCEIKVA 75 (75)
T ss_dssp CCBTTBCCCEEEC
T ss_pred CeECCEEEEEEEC
Confidence 8888999998864
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.1e-14 Score=136.45 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=71.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccC--CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG--~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++|||+||+.++|+++|+++|++|| .|+.|+|++++.+++ .||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 567999999999999999999999999 999999987754322 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 016538 365 AELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~ 383 (387)
+.||+..+.++.|+|.++.
T Consensus 130 ~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp TTSTTSCBTTBCCEEEECC
T ss_pred HHcCCCeECCEEeEEEECC
Confidence 9999999999999999875
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=7.4e-14 Score=120.38 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=68.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|++.++|++|++
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG-----------------VSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CccceEEEEeCCHHHHHHHHH
Confidence 456899999999999999999999999999999997654221 138999999999999999999
Q ss_pred HHcCCCCCCCc--eEEEE
Q 016538 366 ELNDEGNWRSG--LRVRL 381 (387)
Q Consensus 366 ~Ln~~~~~~~g--LrV~L 381 (387)
.|++..+.++. |+|.+
T Consensus 149 ~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 149 GLNGQKPSGATEPITVKF 166 (167)
T ss_dssp HHTTCCCTTCSSCCEEEE
T ss_pred HhcCCccCCCccceEEEe
Confidence 99999988876 66654
No 131
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=6.5e-15 Score=123.85 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=70.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCC---eeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~---V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
...++|||+|||.++|+++|+++|+.||. |..|+|++++. + ..||||||+|++.++|++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g-----------------~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G-----------------RQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-S-----------------CEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-C-----------------CCCeEEEEEECCHHHHHH
Confidence 35689999999999999999999999999 89999976642 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeec
Q 016538 363 AIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~ 384 (387)
||+ |++..+.++.|+|.++..
T Consensus 77 Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 77 ALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HGG-GTTEEETTEEEEEEEECH
T ss_pred HHh-cCCCeECCeEEEEEECCH
Confidence 999 999999999999988754
No 132
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=3.6e-14 Score=123.50 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=68.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++.+ + ..+|||||+|++.++|++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-G-----------------LSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-C-----------------CEEEEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999976531 1 138999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEe
Q 016538 366 ELNDEGNWR---SGLRVRLM 382 (387)
Q Consensus 366 ~Ln~~~~~~---~gLrV~L~ 382 (387)
.||+..+++ +.|+|.++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCCCeEEEec
Confidence 999987764 78999876
No 133
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7e-15 Score=122.50 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=70.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCe-eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V-~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||.++|+++|+++|+.||.| ..|+|++++ ++ ..||||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g-----------------~~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NG-----------------QGLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TS-----------------SCSSCEEEECSSHHHHHHHG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CC-----------------CcceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999999 889997664 21 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+. ++..+.++.|+|.++..
T Consensus 75 ~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 75 RL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp GG-CSEEETTEEEEEEEECH
T ss_pred Hh-CCCccCCeEEEEEECCH
Confidence 97 99888899999988764
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-15 Score=119.97 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=68.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|.. +++.+..+ + ..||||||+|++.++|++|++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT----------G-------TNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE----------E-------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC----------C-------CcCcEEEEEECCHHHHHHHHh
Confidence 45789999999999999999999999999877 43333211 1 248999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.++.|+|.++..+
T Consensus 77 -l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 77 -LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp -GGGCCBTTBCCEEECCSCC
T ss_pred -cCCcEECCcEEEEEEcCCC
Confidence 9999999999999998754
No 135
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-14 Score=115.30 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=66.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCC-eeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~-V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.++|+++|+++|++||. |..+.+. .+|||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999999 6655552 27899999999999999999
Q ss_pred HHcC-CCCCCCceEEEEeecc
Q 016538 366 ELND-EGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~-~~~~~~gLrV~L~~~r 385 (387)
.||+ ..++++.|+|.++..+
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp HHTTTCEETTEECEEEECCCC
T ss_pred HccCCeeECCEEEEEEEccCc
Confidence 9999 8889999999998754
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=9.8e-15 Score=120.29 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=70.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCC---eeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~---V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
...++|||+|||.++|+++|+++|+.||. |..|+|++++. + ..+|||||+|++.++|++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g-----------------~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-G-----------------KRRGDALIEMESEQDVQK 70 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-S-----------------TTCSEEEEEBSSHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-C-----------------CEeeEEEEEECCHHHHHH
Confidence 35689999999999999999999999998 89999876532 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeec
Q 016538 363 AIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~ 384 (387)
||+ |++..+.++.|+|..+..
T Consensus 71 Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 71 ALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHT-TTTCCSSSSCCCCEECCH
T ss_pred HHH-hCcceeCCeEEEEEECCH
Confidence 999 999999999999988764
No 137
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=1.2e-14 Score=126.17 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=70.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCC---eeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~---V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. + ..||||||+|++.++|++
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g-----------------~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-G-----------------RQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-S-----------------CEEEEEEEECSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-C-----------------CCCeEEEEEECCHHHHHH
Confidence 35689999999999999999999999999 88999987642 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeec
Q 016538 363 AIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~~~ 384 (387)
||+ ||+..+.++.|+|.++..
T Consensus 104 Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 104 ALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHT-TTEEESSSSEEEEEECCH
T ss_pred HHh-cCCCEECCEEEEEEECCh
Confidence 999 999999999999988754
No 138
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=6.5e-14 Score=121.41 Aligned_cols=82 Identities=13% Similarity=0.200 Sum_probs=72.4
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG-----------------QSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS-----------------TTSEEEEEEESSHHHHHHHHH
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHh
Confidence 457899999999999999999999999999999997654322 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
+++..+.++.|+|.++..|
T Consensus 148 -~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp -CSEECSSSSCEEEEECCCC
T ss_pred -CCCEEeCCeEEEEeecCCC
Confidence 8999999999999998765
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=112.32 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=68.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEE-EeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vr-l~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.++|+++|+++|+.||.|..|+ +..++. .|.|||+|++.++|++|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999996 654321 2349999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.||+..+.++.|+|.++..+
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 99999999999999998765
No 140
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=1.7e-14 Score=115.65 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=70.2
Q ss_pred hhceeeeeecCCCcccHHHHH----HHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~----e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
...++|||+|||.++|+++|+ ++|++||.|..|++... ++ .+|||||+|++.++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-------------~~-------~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-------------LK-------MRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-------------HH-------HTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-------------CC-------cCcEEEEEeCCHHHHH
Confidence 456899999999999999999 99999999999987421 11 3789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeecc
Q 016538 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 362 kAv~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+|++.|++..++++.|+|..+..+
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHhCCCEECCcEEEEEEccCC
Confidence 999999999999999999988654
No 141
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=4e-14 Score=111.11 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=64.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhcc----C-------CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEe
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~f----G-------~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEF 354 (387)
...++|||+|||.++|+++|+++|++| | .|..+++.++ ||||||+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f 60 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEF 60 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEc
Confidence 357899999999999999999999999 8 8999988422 68999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEE
Q 016538 355 ESVELAEKAIAELNDEGNWRSGLRVR 380 (387)
Q Consensus 355 es~E~A~kAv~~Ln~~~~~~~gLrV~ 380 (387)
++.++|++|+ .||+..+.++.|+|.
T Consensus 61 ~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 61 RSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 9999999999 999999988888886
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=118.89 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=67.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||+++|+++|+++|+.| .|..|+|++++. + ..+|||||+|++.++|++|| .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g-----------------~~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-G-----------------RNNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-C-----------------CCCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-C-----------------CCCeEEEEEECCHHHHHHHH-h
Confidence 45799999999999999999999999 899999976542 1 13899999999999999999 6
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
||+..+.++.|+|..+..
T Consensus 75 ~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp TTTEEETTEEEEEEECCH
T ss_pred cCCCeECCeEEEEEECCc
Confidence 999999899899877653
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=115.62 Aligned_cols=79 Identities=24% Similarity=0.276 Sum_probs=66.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|++||.| +++.+. + + ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-~----------g-------~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-N----------G-------KSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-S----------S-------CBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-C----------C-------CEeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999987 343221 0 1 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp HTSSEEETTEEEEEEECSSC
T ss_pred HhCCCEeCCeEEEEEEcCCC
Confidence 99999999999999998754
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=6e-14 Score=128.47 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=71.0
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..+||||+|||.++|+++|+++|++||.|.+|+|++++.+++ .+|||||+|++.++|++|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----------------SLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC-----------------ccccccceeCCHHHHHHHHHH
Confidence 468999999999999999999999999999999987654321 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
|++..+.++.|+|.....
T Consensus 77 ~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp HTTCEETTEECEEEECCC
T ss_pred hhhhhcCCcccccccccc
Confidence 999998888888877643
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-14 Score=123.03 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=68.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..+.++.+..++ ..+|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g-----------------~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNG-----------------KATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTS-----------------SEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCC-----------------CCCeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999874443332111 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
||+..+.++.|+|.++..
T Consensus 86 -~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 -RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp -SCSBCSTTSCBEEEEECH
T ss_pred -hCCCeECCcEEEEEECCH
Confidence 999999999999998764
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.6e-15 Score=125.06 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=72.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeE--------EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~--------Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
...++|||+|||.++|+++|+++|++||.|.. |++..++.++ ..+|||||+|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-----------------KLKGEATVSFDDP 67 (116)
Confidence 45789999999999999999999999999998 7776553221 1389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeecc
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L~~~r 385 (387)
++|++|++.||+..+.++.|+|.++..+
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 9999999999999999999999988654
No 147
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-14 Score=115.52 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=68.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..+.. . + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~--~-------------~-------~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ--D-------------G-------KSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEE--T-------------T-------EEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCC--C-------------C-------CcceEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999998876611 1 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..+.++.|+|.++..++
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 72 EKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp HTTEEEETTEEEEEEECSSSC
T ss_pred HhCCCEECCeEEEEEEcCCCC
Confidence 999999999999999986543
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=9e-14 Score=119.83 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=70.9
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+|||.++|+++|+++|+.||.|..|++++++.++ ..+|||||+|.+.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-----------------QSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------cceeEEEEEECCHHHHHHHHHHc
Confidence 5799999999999999999999999999999998664222 13799999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 016538 368 NDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~ 384 (387)
++..+.++.|+|.+...
T Consensus 65 ~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARP 81 (167)
T ss_dssp TTCEETTEECEEEECCC
T ss_pred CCCccCCceEEEEecCC
Confidence 99999999999987753
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=4.4e-14 Score=116.50 Aligned_cols=72 Identities=24% Similarity=0.175 Sum_probs=67.3
Q ss_pred hceeeeeecCCCc-ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d-~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.+ +|+++|+++|++||.|..|++. +|||||+|++.++|++|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 4589999999999 9999999999999999999871 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|++..+.++.|+|.++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHTTCEETTEECCEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999999999999999986
No 150
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=2.6e-14 Score=116.02 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=68.7
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++ ++ ..+|||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TG-----------------VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-----------------CEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CccceEEEEECCHHHHHHHHh
Confidence 457899999999999999999999999999999997664 21 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
++..+.++.|+|..+..+
T Consensus 69 --~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 69 --SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp --CCCEETTEECEEEEEEEC
T ss_pred --CCCeECCEEEEEEECCcC
Confidence 777777888888877643
No 151
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6e-14 Score=116.05 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=68.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCe----eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V----~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
...++|||+|||.++|+++|+++|+.||.| ..+++. ++ ..+|||||+|++.++|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g-----------------~~~g~afV~f~~~~~a~ 81 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TG-----------------RMRGQAFITFPNKEIAW 81 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CS-----------------SSCSEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CC-----------------ccceEEEEEECCHHHHH
Confidence 356899999999999999999999999999 455543 10 13799999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeecc
Q 016538 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 362 kAv~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+|++.|++..+.++.|+|.++..+
T Consensus 82 ~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 82 QALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp HHHHHSTTCBCSSCBCEEEECCCC
T ss_pred HHHHHhCCCEeCCcEEEEEEccCC
Confidence 999999999999999999998754
No 152
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.4e-14 Score=112.59 Aligned_cols=74 Identities=26% Similarity=0.302 Sum_probs=66.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|| ++|+++|+++|++||.|..|+|.. .||||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 4689999996 899999999999999999999831 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|.++..+
T Consensus 69 l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp TTTEEETTEEEEEECCSSC
T ss_pred hCCCeECCeEEEEEECCCC
Confidence 9999999999999988754
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=9.6e-14 Score=116.01 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=64.0
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|..|+|.. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999842 27999999999999999999
Q ss_pred HcCCCCCCCc-----eEEEEee
Q 016538 367 LNDEGNWRSG-----LRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~g-----LrV~L~~ 383 (387)
||+..+.++. |+|....
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC
T ss_pred hCCCEECCcEeeeEEEEeccCC
Confidence 9999988877 6666654
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.5e-14 Score=113.46 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=67.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.|+. |+++.++.++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETG-----------------SSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999998864 4454443211 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.|++..+.++.|+|.++..+
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp HHTTCEETTEECEEEECCCC
T ss_pred HhCCCeECCeEEEEEEecCC
Confidence 99999999999999998754
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=1.2e-13 Score=123.83 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=67.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
..+|||+||++++|+++|+++|++||.|+.|+|...+ .+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 4579999999999999999999999999999985211 2689999999999999999999
Q ss_pred cCCCCCC--CceEEEEeecc
Q 016538 368 NDEGNWR--SGLRVRLMLRR 385 (387)
Q Consensus 368 n~~~~~~--~gLrV~L~~~r 385 (387)
|+..+++ +.|+|..+..+
T Consensus 105 nG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp TTBCSSSSCSCEEEEECSSS
T ss_pred CCCEecCCCcEEEEEEecCC
Confidence 9999866 78999887654
No 156
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=124.63 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=71.6
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|+.|+|.++. ++ ..+|||||+|++.++|++|++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g-----------------~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SG-----------------RSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TS-----------------SCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-----------------CEeeEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653 11 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
||+..+.++.|+|.++..
T Consensus 149 lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp STTCBCSSSBCEEEEESS
T ss_pred hCCCEECCEEEEEEEecC
Confidence 999999999999998864
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.4e-13 Score=122.39 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=69.5
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|++.++|++|++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG-----------------KKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC-----------------CccceEEEEECCHHHHHHHHH
Confidence 345899999999999999999999999999999998764322 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
. ++..+.++.|+|..+..+
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp C-SCCEETTEECEEEECC--
T ss_pred h-CCcEECCEEEEEEecCCh
Confidence 6 788888899999988754
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=2.3e-14 Score=124.92 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||+++|+++|+++|+.|| |..|+|+++++ + ..||||||+|++.++|++||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g-----------------~srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-G-----------------RVTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-S-----------------CSSCCCEEECSHHHHHHHHT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-C-----------------CCceEEEEEeCCHHHHHHHH-
Confidence 4568999999999999999999999999 77999876532 1 13899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeecc
Q 016538 366 ELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~r 385 (387)
.+|+..+.++.|+|.+...+
T Consensus 104 ~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 104 SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp TCCSCSSSSCCCCCEECCCS
T ss_pred hhCCCEECCEEEEEEECCCC
Confidence 78999999999999887754
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.1e-13 Score=119.12 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=69.7
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
|+|||+|||.++|+++|+++|+.||.|..|++++++. + ..+|||||+|.+.++|++|++.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-----------N-------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6999999999999999999999999999999976532 1 138999999999999999999999
Q ss_pred CCCCCCCceEEEEeec
Q 016538 369 DEGNWRSGLRVRLMLR 384 (387)
Q Consensus 369 ~~~~~~~gLrV~L~~~ 384 (387)
+..+.++.|+|..+..
T Consensus 63 ~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 63 GKQIENNIVKINWAFQ 78 (166)
T ss_dssp TCEETTEECEEEECCC
T ss_pred CCccCCCeeEEEEcCC
Confidence 9999999999988754
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=8.5e-14 Score=131.65 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=67.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||+.++|+++|+++|++||.|..|++..+ .+|||||+|++.++|++|++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~----------------------~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG----------------------RHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 4588999999999999999999999999999998632 158999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 016538 367 LNDEGNW-RSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~-~~gLrV~L~~ 383 (387)
||+..++ ++.|+|.++.
T Consensus 264 l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCcEeCCCCEEEEEEec
Confidence 9999988 8889998864
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.3e-13 Score=122.81 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=73.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|++.++|++|++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-----------------LSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-----------------SEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997654221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..+.++.|+|.++..++
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 999999999999999987653
No 162
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.2e-13 Score=127.06 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=68.7
Q ss_pred hceeeeeecCC-CcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP-~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+||+ .++|+++|+++|+.||.|.+|+++++ .||||||+|++.++|++||+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46899999999 89999999999999999999999532 16899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.||+..+.++.|+|.++.
T Consensus 61 ~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHTTCEETTEECEEEECS
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999999999999874
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=8e-14 Score=110.60 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=67.6
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++| .|..|++. + .||||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~---------------------~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R---------------------NKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G---------------------GGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C---------------------CCcEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999 99999883 1 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.++.|+|.++...
T Consensus 60 l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred hCCCeECCcEEEEEEcCCC
Confidence 9999999999999987543
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=2.1e-13 Score=123.02 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=70.6
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+|||.++|+++|+++|+.||.|..|+++++..++ ..+|||||+|.+.++|++|+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 87 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM-----------------KHKGFAFVEYEVPEAAQLAL 87 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC------------------CCCSEEEEEESSHHHHHHHH
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccCceEEEEeCCHHHHHHHH
Confidence 3467899999999999999999999999999999997654221 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.|++..+.++.|+|.....
T Consensus 88 ~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HHHSSCCCC-CCCEEECCSC
T ss_pred HHccCCeeCCeeEEEecCCC
Confidence 99999999999999976543
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.8e-14 Score=118.79 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=63.6
Q ss_pred hceeeee--ecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV--~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++||| +||+.++|+++|+++|++||.|..|.|.. .||||||+|++.++|++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4578999 66999999999999999999999998731 1689999999999999999
Q ss_pred HHHcCCCC-----CCCceEEEEeec
Q 016538 365 AELNDEGN-----WRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~-----~~~gLrV~L~~~ 384 (387)
+.||+..+ .+..|.|.++..
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEESC
T ss_pred HHhCCCEEccccCCCcEEEEEeccc
Confidence 99999865 344577777654
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=1e-13 Score=119.98 Aligned_cols=80 Identities=25% Similarity=0.333 Sum_probs=70.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
.++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|.+.++|++|++.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG-----------------YSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTT-----------------EECSEEEEEESSHHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCC-----------------ccceEEEEEECCHHHHHHHHHhc
Confidence 5799999999999999999999999999999987653221 13789999999999999999999
Q ss_pred cCCCCCCCceEEEEeec
Q 016538 368 NDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 368 n~~~~~~~gLrV~L~~~ 384 (387)
++..+.++.|+|.+...
T Consensus 66 ~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 66 NGITVRNKRLKVSYARP 82 (168)
T ss_dssp TTCEETTEECEEEECCC
T ss_pred CCCEeCCcEEEEEecCC
Confidence 99999888899987754
No 167
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=2.3e-13 Score=119.27 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=68.3
Q ss_pred hhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 285 ~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
....++|||+|||.++|+++|+++|+.||.|..+ .. ++ ..+|||||+|++.++|.+|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~-~~-----------------~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ-DG-----------------KSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CS-SS-----------------SCCSEEEEECSSHHHHHHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cC-CC-----------------CCceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999988766 11 11 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.|++..+.++.|+|.++..|
T Consensus 154 ~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHTEEEETTEEEEEEECSSC
T ss_pred HHhCCCEECCeEEEEEecCCC
Confidence 999999999999999998765
No 168
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=2.8e-13 Score=114.71 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=68.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|| ++|+++|+++|+.||.|..|++.. .||||||+|++.++|++|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 45789999996 799999999999999999999841 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeccC
Q 016538 366 ELNDEGNWRSGLRVRLMLRRG 386 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~rg 386 (387)
.|++..+.++.|+|.++..+.
T Consensus 92 ~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSSC
T ss_pred HhCCCEECCeEEEEEEeCCCC
Confidence 999999999999999987653
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=4.6e-13 Score=114.75 Aligned_cols=74 Identities=26% Similarity=0.242 Sum_probs=64.1
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccE-EEEEeCCHHHHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~-aFVEFes~E~A~kAv~~L 367 (387)
..|||+||++.+|+++|+++|++||.|+.|+|.. + +|| |||||++.++|++|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3478999999999999999999999999999842 1 365 999999999999999999
Q ss_pred cCCCCCC--CceEEEEeecc
Q 016538 368 NDEGNWR--SGLRVRLMLRR 385 (387)
Q Consensus 368 n~~~~~~--~gLrV~L~~~r 385 (387)
|+..+.+ +.|+|..+..+
T Consensus 83 nG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp TTCCCBTTBSEEEEECCSCS
T ss_pred CCCEecCCCeEEEEEEecCC
Confidence 9998877 47888877654
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.42 E-value=5.1e-13 Score=136.38 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=72.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+||+.++|+++|+++|++||.|+.|.|+.++.++. .+|||||+|++.++|++||+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK-----------------PRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC-----------------ccceEEEeeccHHHHHHHHHH
Confidence 457999999999999999999999999999999986643221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
||+..+.+..|+|.++..+
T Consensus 164 lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred cCCCEECCEEEEEEEeCCC
Confidence 9999999999999998653
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=3.4e-13 Score=116.59 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=64.3
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccE-EEEEeCCHHHHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~-aFVEFes~E~A~kAv~~L 367 (387)
..|||+||++.+|+++|+++|++||.|..|+|... .+|+ |||||++.++|++|++.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 46889999999999999999999999999988521 1566 999999999999999999
Q ss_pred cCCCCCC--CceEEEEeec
Q 016538 368 NDEGNWR--SGLRVRLMLR 384 (387)
Q Consensus 368 n~~~~~~--~gLrV~L~~~ 384 (387)
||..+.+ +.|+|.++..
T Consensus 87 nG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 87 DGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp TTCEEETTEEEEEEEECSC
T ss_pred CCCeecCCCcEEEEEecCC
Confidence 9998887 6688877653
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=3.6e-13 Score=107.77 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=57.1
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
....+|||+|||.++|+++|+++|++||.|..|+|.++ .||||||+|++.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH---
Confidence 45689999999999999999999999999999998532 27999999999999983
Q ss_pred HHcCCCCCCCc--eEEEEeecc
Q 016538 366 ELNDEGNWRSG--LRVRLMLRR 385 (387)
Q Consensus 366 ~Ln~~~~~~~g--LrV~L~~~r 385 (387)
|++..+..+| |+|..+..|
T Consensus 64 -~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -HTTCEEEETTEEEEEEECC--
T ss_pred -HcCCCcccCCEEEEEEEcCCC
Confidence 5665555344 555555433
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=1.5e-13 Score=118.06 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=66.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCee--EEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~--~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++|||+|||+++|+++|+++|+.| .|. .|+|++++. + ..||||||+|++.++|++||
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-G-----------------rsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-G-----------------KITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-S-----------------SSCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-C-----------------CCceEEEEEECCHHHHHHHH
Confidence 46789999999999999999999999 566 888876542 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+. ++..+.++.|+|..+..+
T Consensus 102 ~~-~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 102 GK-HKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp TT-TTCCBTTBCCCCEEECHH
T ss_pred HH-CCCEECCEEEEEEECCHH
Confidence 95 668888999999887643
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.41 E-value=3.6e-13 Score=119.68 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=69.9
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|+++++..++ ..+|||||+|.+.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-----------------RSRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC-----------------CccceEEEEeCCHHHHHHHHh
Confidence 467899999999999999999999999999999998764322 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
. ++..+.++.|+|..+..
T Consensus 74 ~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 74 A-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp T-CSCEETTEECEEEECCC
T ss_pred c-CCCEECCEEeeeecccC
Confidence 5 77788888899887654
No 175
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=9.2e-13 Score=118.02 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=68.1
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
.++|||+|||.++|+++|+++|+.|| .|..|++... .+|+|||+|++.++|++|++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 68899999999999999999999999 9999998532 167999999999999999999
Q ss_pred HcCCCCC-CCceEEEEeec
Q 016538 367 LNDEGNW-RSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~-~~gLrV~L~~~ 384 (387)
|++..+. ++.|+|.++..
T Consensus 178 l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HTSSCCSSCCSCCEEEECC
T ss_pred hcCCccCCCCeEEEEeecc
Confidence 9999998 88999998754
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=113.12 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=55.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|++||.|. ++++.++.+. ..| ..||||||+|++.++|++||+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~-----------~~g---~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESK-----------SYF---PPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSC-----------CCS---CTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCC-----------CCC---CcccEEEEEECCHHHHHHHHHh
Confidence 468999999999999999999999999999 7765543211 001 2489999999999999999999
Q ss_pred Hc
Q 016538 367 LN 368 (387)
Q Consensus 367 Ln 368 (387)
|+
T Consensus 72 ~~ 73 (114)
T 2dnl_A 72 CL 73 (114)
T ss_dssp SE
T ss_pred hh
Confidence 84
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=6.1e-13 Score=115.66 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=65.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
+.++|||+|||.++|+++|+++|++||.|..|++++++..+. ...+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP---------------PQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS---------------CEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643210 01389999999999999999999
Q ss_pred HcCCCCC---CCceEEEEe
Q 016538 367 LNDEGNW---RSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~---~~gLrV~L~ 382 (387)
|++..+. +..++|...
T Consensus 67 l~~~~~~~~~~~~~~~~~~ 85 (175)
T 3nmr_A 67 LHNMKVLPGMHHPIQMKPA 85 (175)
T ss_dssp HTTTCCCTTCSSCCEEEEC
T ss_pred hcCcEEccCCccceEEccc
Confidence 9997665 334555443
No 178
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=109.51 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=64.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..| +. ++.+ .+ ||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~-------------------g~-~afV~f~~~~~a~~ai~- 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDK-------------------GV-FAIVEMGDVGAREAVLS- 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSS-------------------CC-EEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCC-------------------Cc-EEEEEECCHHHHHHHHh-
Confidence 45799999999999999999999999999988 32 2110 13 89999999999999999
Q ss_pred HcCCCCCCCceEEEEeecc
Q 016538 367 LNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~r 385 (387)
|++..+.++.|+|..+..+
T Consensus 64 l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CSCCEETTEECCCBCSCCS
T ss_pred cCCeEECCEEEEEEECCcC
Confidence 9999999999999876543
No 179
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.5e-14 Score=118.57 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=67.2
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCe----eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V----~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
...++|||+|||+++|+++|+++|+.||.| ..|+|+++. ++ ..||||||+|++.++|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~g-----------------r~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DG-----------------RPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TS-----------------CEEEEEEECCSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CC-----------------CEeeEEEEEECCHHHHH
Confidence 346799999999999999999999999975 688887653 11 13899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeec
Q 016538 362 KAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 362 kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+||+. ++..+.++.|+|..+..
T Consensus 83 ~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 83 NALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HHHTT-TTEESSSCEECCEEECH
T ss_pred HHHHh-CCCeeCCeEEEEEECCH
Confidence 99996 88888888888877654
No 180
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=116.69 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=67.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeE--------EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~--------Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E 358 (387)
..++|||+|||.++|+++|+++|+.||.|.. |++... ...+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~--------------------g~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE--------------------GRMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE--------------------TTTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC--------------------CCcccEEEEEeCCHH
Confidence 4689999999999999999999999999876 333211 113899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 359 LAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 359 ~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+|++|++.||+..+.++.|+|.++..
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 99999999999999999999998854
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=9.6e-13 Score=121.72 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=70.0
Q ss_pred hhceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||. ++|+++|+++|+.||.|..|++++++ +|||||+|.+.++|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 4578999999999 99999999999999999999996431 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeec
Q 016538 365 AELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.|++..+.++.|+|.++..
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSC
T ss_pred HHhCCCeECCeEEEEEEecC
Confidence 99999999999999988763
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=8.5e-13 Score=125.37 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=71.7
Q ss_pred hhceeeeeecCCCc-ccHHHHHHHHhccCCeeEEEEeCCCC-CCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQT-SGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 286 ~~~rTVyV~nLP~d-~T~e~L~e~Fs~fG~V~~Vrl~~p~~-~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
...++|||+|||.+ +|+++|+++|+.||.|..|++.++.. ++ ..+|||||+|++.++|.+|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg-----------------~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS-----------------FNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC--------------------CCCEEEEEEESSHHHHHHH
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC-----------------CCceEEEEEeCCHHHHHHH
Confidence 45689999999999 99999999999999999999875432 01 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeecc
Q 016538 364 IAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+ .||+..++++.|+|.++..|
T Consensus 271 ~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp G-GGTTEEETTEEEEEEECCCC
T ss_pred H-HhcCCEECCcEEEEEEecCC
Confidence 9 99999999999999998765
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=7.2e-13 Score=118.72 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=69.0
Q ss_pred hceeeeeecCCC-cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~-d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||. ++|+++|+++|+.||.|..|++.+++ +|||||+|.+.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 99999999999999999999986431 6789999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++..+.++.|+|.++..
T Consensus 60 ~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 60 HLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHTTCCCSSCCCEEEECCC
T ss_pred HhCCCeecCeEEEEEEecC
Confidence 9999999999999998764
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=107.47 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=61.9
Q ss_pred eeeeecCCCcccHHH----HHHHHhcc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 290 IVVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 290 TVyV~nLP~d~T~e~----L~e~Fs~f-G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
+|||.|||++++.++ |+++|+.| |+|..|. .|+|||+|++.|+|++|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~~A~ 63 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAERAQ 63 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHHHHH
Confidence 499999999999887 66899999 5998771 268999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.|++..+.++.|+|.++..+
T Consensus 64 ~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 64 KRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHTTCCSSSSCCEEESSCCS
T ss_pred HHhcCCccCCceEEEEecCCC
Confidence 999999999999999998764
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=2e-12 Score=107.17 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=67.8
Q ss_pred hhceeeeeecCCC-----cccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 016538 286 LQSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (387)
Q Consensus 286 ~~~rTVyV~nLP~-----d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (387)
...++|++.|+-. +.++++|++.|++||.|..|+|.+++..++ ..+|||||+|++.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~----------------~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPD----------------DEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCT----------------TTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCC----------------CCcEEEEEEECCHHHH
Confidence 3568999999952 236899999999999999999976532110 1389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEee
Q 016538 361 EKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 361 ~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
++|++.||+..+.++.|+|.++.
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999999999999999875
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=1.4e-12 Score=123.63 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=68.4
Q ss_pred hhceeeeeecCCCcc---------cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 016538 286 LQSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~---------T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (387)
...+||||+||+.++ ++++|+++|++||.|+.|+|+. .||||||+|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~~ 188 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeCC
Confidence 467899999999998 7999999999999999999963 27899999999
Q ss_pred HHHHHHHHHHHcCCCC------------CCCceEEEEeec
Q 016538 357 VELAEKAIAELNDEGN------------WRSGLRVRLMLR 384 (387)
Q Consensus 357 ~E~A~kAv~~Ln~~~~------------~~~gLrV~L~~~ 384 (387)
.++|++|++.|++..+ .++.|+|+.+..
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 9999999999999998 678899998764
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.2e-13 Score=107.78 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=55.2
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.++ .||||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~--- 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL--- 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH---
Confidence 4689999999999999999999999999999998532 278999999999999764
Q ss_pred HcCCCCCCCceEEEEe
Q 016538 367 LNDEGNWRSGLRVRLM 382 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~ 382 (387)
++..+...+++|.+.
T Consensus 59 -~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 59 -CGEDLIIKGISVHIS 73 (88)
T ss_dssp -TTCEEEETTEEEEEE
T ss_pred -hcCCceeCCEEEEEE
Confidence 444343344444443
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.36 E-value=1.7e-12 Score=122.75 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=69.9
Q ss_pred hhceeeeeecCCCcccHHHHH----HHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~----e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
...++|||+|||.++|+++|+ ++|+.||.|..|++.+.+ ..||||||+|++.++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--------------------~~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--------------------KMRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--------------------CcceEEEEEECCHHHHH
Confidence 457899999999999999977 899999999999985321 13799999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeec
Q 016538 362 KAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 362 kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+|++.||+..++++.|+|.++..
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999999999999998754
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=8.2e-13 Score=114.42 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=63.8
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.++ ..+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG-----------------RSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS-----------------SCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC-----------------CccceEEEEEccHHHHHHHHhc
Confidence 46899999999999999999999999999999997654322 1389999999999999999995
Q ss_pred HcCCCCCCCceEEEEee
Q 016538 367 LNDEGNWRSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~ 383 (387)
+..+.++.|+|....
T Consensus 65 --~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 65 --QHILDGKVIDPKRAI 79 (167)
T ss_dssp --CCEETTEECCCEECC
T ss_pred --ccccCCeEccccccc
Confidence 345556666666543
No 190
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.34 E-value=7.4e-13 Score=114.50 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=66.6
Q ss_pred eeeeeecC----CCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC----HHH-
Q 016538 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (387)
Q Consensus 289 rTVyV~nL----P~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes----~E~- 359 (387)
..|||+|| ++++++++|+++|+.||+|..++++.|+.+|. .+|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~-----------------slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSAL-----------------PLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCC-----------------EEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------eeeEEEEEECCCCCCcchH
Confidence 57999999 99999999999999999999999999876553 38999999996 323
Q ss_pred ---HHHHHH--HHcCCCCCCCceEEEEe
Q 016538 360 ---AEKAIA--ELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 360 ---A~kAv~--~Ln~~~~~~~gLrV~L~ 382 (387)
|.+|++ .||+..+.|+.|+|.|-
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 899999 78999999999999874
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=2.1e-12 Score=122.17 Aligned_cols=82 Identities=29% Similarity=0.277 Sum_probs=72.2
Q ss_pred hhceeeeeecCCCcc-cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~-T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
...++|||+|||.++ |+++|+++|+.||.|..|++..+.+ + ..+|+|||+|++.++|.+|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-----------G-------QLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-----------C-------CEEEEEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-----------C-------CcccEEEEEeCCHHHHHHHH
Confidence 467899999999995 9999999999999999999876531 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeecc
Q 016538 365 AELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 365 ~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.||+..+.++.|+|.++..+
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp HHHTTCEETTEECEEEECCSS
T ss_pred HHhCCCccCCeEEEEEEecCC
Confidence 999999999999999998754
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=8.4e-12 Score=118.01 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=71.6
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++.++..++ ..+|||||+|.+.++|++|++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG-----------------QSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999999999997664322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeec
Q 016538 367 LNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 367 Ln~~~~~~~gLrV~L~~~ 384 (387)
|++..+.++.|+|..+..
T Consensus 157 l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp HTTCEETTEECEEEECCG
T ss_pred hCCCEeCCcEEEEEECCC
Confidence 999999999999988764
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=4.6e-12 Score=119.50 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=68.3
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..|++.+ .+|||||+|.+.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999852 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 016538 366 ELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~ 383 (387)
.|++..+.++.|+|....
T Consensus 77 ~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 77 ELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HcCCcEECCceeEeeecc
Confidence 999999989999998764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.27 E-value=1e-11 Score=117.09 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=66.1
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++|||+|||.++|+++|+++|+.||.|..|++..+.+ + ..+|||||+|++.++|.+|++.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR-G-----------------RATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-S-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC-C-----------------CcCcEEEEEeCCHHHHHHHHHH
Confidence 357999999999999999999999999999999976631 1 1389999999999999999999
Q ss_pred HcCCCCC----CCceEEEEee
Q 016538 367 LNDEGNW----RSGLRVRLML 383 (387)
Q Consensus 367 Ln~~~~~----~~gLrV~L~~ 383 (387)
||+..+. ++.|+|..+.
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECC
T ss_pred hcCCeEEecCCCceEEEeecc
Confidence 9654332 6778887764
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.2e-11 Score=102.68 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=65.2
Q ss_pred hceeeeeecCCCcc-----------cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 016538 287 QSRIVVAENLPEDH-----------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (387)
Q Consensus 287 ~~rTVyV~nLP~d~-----------T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (387)
..++|+|.||-... ++++|+++|++||.|..|.|. ++. .+|||||+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~--------------------~~G~afV~f~ 72 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH--------------------PDGVASVSFR 72 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC--------------------TTCEEEEECS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC--------------------CCEEEEEEEC
Confidence 57899999993322 257999999999999999763 210 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeecc
Q 016538 356 SVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (387)
Q Consensus 356 s~E~A~kAv~~Ln~~~~~~~gLrV~L~~~r 385 (387)
+.++|++|++.||+..+.++.|+|.++..+
T Consensus 73 ~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 73 DPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp CHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 999999999999999999999999998653
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.26 E-value=8.2e-12 Score=108.58 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=64.4
Q ss_pred hceeeeeecCCCcccHHHHHHHHhcc----C-------CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~f----G-------~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (387)
+.++|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 6 677776632 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 356 SVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 356 s~E~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.++|++|+ .|++..+.++.|+|.....
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 999999999 8999999888888876543
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.23 E-value=1.2e-11 Score=113.59 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=61.2
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCe--eEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V--~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
.++|||+|||.++|+++|+++|+.||.| ..|++..++. ..+|+|||+|++.++|.+||.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~-------------------~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS-------------------ERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS-------------------SSSEEEEEECSSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC-------------------CCceEEEEEeCCHHHHHHHHH
Confidence 5689999999999999999999999999 8999864420 126899999999999999999
Q ss_pred HHcCCCCCCCc
Q 016538 366 ELNDEGNWRSG 376 (387)
Q Consensus 366 ~Ln~~~~~~~g 376 (387)
.||+..+.+.+
T Consensus 184 ~lng~~~~g~~ 194 (205)
T 3tyt_A 184 FLNHYQMKNPN 194 (205)
T ss_dssp HHTTCEECCSS
T ss_pred HhCCCCccCCC
Confidence 99999887775
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=1.9e-11 Score=101.24 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=65.3
Q ss_pred hceeeeeecC--CCcc--------cHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 016538 287 QSRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (387)
Q Consensus 287 ~~rTVyV~nL--P~d~--------T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (387)
..+.|++.|+ +.+. ..++|++.|++||.|..|+|.+++.... ...+|+|||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~---------------~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE---------------VPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC---------------CTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC---------------cCCcEEEEEEECC
Confidence 3567777877 3332 3479999999999999999976542110 0137999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 357 ~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
.++|++|++.||+..+.++.|+|.++.
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999999999999999999999875
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.22 E-value=2.2e-11 Score=115.52 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=68.3
Q ss_pred hceeeeeecCCCcccHHHHHHHHhccC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~fG-~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
..++|||+|||.++|+++|+++|+.|| .|..|++..++. + ..+|||||+|.+.++|++|++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-----------N-------TSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 999999865431 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
.|++..++++.|+|.++..
T Consensus 178 ~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp HHTTCEETTEECEEEECCC
T ss_pred HhCCCEeCCcEEEEEECCC
Confidence 9999999999999988653
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.22 E-value=1.1e-11 Score=110.09 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=62.9
Q ss_pred hceeeeeecCCCcccHHHHHHHHhcc----C-------CeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~f----G-------~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (387)
..|+|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 4 555555521 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeec
Q 016538 356 SVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 356 s~E~A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
+.++|++|+ .|++..+.++.|+|.....
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 999999999 7999999888899887653
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.20 E-value=1.1e-11 Score=102.47 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=56.9
Q ss_pred eecCCCcccHHHHHHHH------------hccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 016538 293 AENLPEDHCHQNLMKIF------------SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (387)
Q Consensus 293 V~nLP~d~T~e~L~e~F------------s~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (387)
+.||+.++|+++|++.| ++||.|..|++.++.+ + ..+|||||+|++.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-----------~-------~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-----------D-------HLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-----------S-------SSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-----------C-------CccEEEEEEECCHHHH
Confidence 45566666666555554 9999999999975431 1 1389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEe
Q 016538 361 EKAIAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 361 ~kAv~~Ln~~~~~~~gLrV~L~ 382 (387)
++|++.||+..+.++.|+|.+.
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999999999999999998864
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.17 E-value=4.5e-12 Score=110.95 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=65.0
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...++|||+|||.++|+++|+++|+.||.|..+.++ +. +.+ ..+|||||+|.+.++|++|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~-~~----------~~~-------~~~g~afV~f~~~~~a~~A~- 71 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DV----------RTG-------TNRKFGYVDFESAEDLEKAL- 71 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EE----------EEE-------TTTTEEEEEESSHHHHHHHH-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-EC----------CCC-------ccccEEEEEECCHHHHHHHH-
Confidence 467899999999999999999999999987652221 11 111 24899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeec
Q 016538 366 ELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L~~~ 384 (387)
+|++..+.++.|+|..+..
T Consensus 72 ~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp HGGGEEETTEEEEEECCCC
T ss_pred hcCCCEeCCeEEEEecCCC
Confidence 5999999999999987754
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=6.3e-11 Score=100.37 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=66.9
Q ss_pred hhceeeeeecCC--Cc---ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 016538 286 LQSRIVVAENLP--ED---HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (387)
Q Consensus 286 ~~~rTVyV~nLP--~d---~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (387)
...++|++.|+= .+ -.+++|++.|++||.|..|+|.+++.... .. ...+|++||+|++.++|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~--------~~-----~~~~G~~FV~F~~~e~A 84 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE--------ED-----AEIIVKIFVEFSIASET 84 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSS--------TT-----CEEEEEEEEEESSHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcc--------cC-----CcceEEEEEEECCHHHH
Confidence 357888888883 22 23689999999999999999987642100 00 01279999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEee
Q 016538 361 EKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 361 ~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
++|++.||+..+.++.|+|.++.
T Consensus 85 ~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 85 HKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999999999999999874
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=5.1e-11 Score=118.32 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=56.6
Q ss_pred hceeeeeec--CCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 016538 287 QSRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (387)
Q Consensus 287 ~~rTVyV~n--LP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (387)
..++|||+| |+.++|+++|+++|++||+|+.|+|.. .||||||+|++.|+|++|+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 467999999 578999999999999999999987721 2789999999999999999
Q ss_pred HHHcCCCCC
Q 016538 365 AELNDEGNW 373 (387)
Q Consensus 365 ~~Ln~~~~~ 373 (387)
+.|||..+.
T Consensus 74 ~~lnG~~~~ 82 (345)
T 3tht_A 74 VTLNGKEVV 82 (345)
T ss_dssp HHTTTCEEE
T ss_pred HHhCCCccc
Confidence 999998663
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.4e-10 Score=93.21 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 016538 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (387)
Q Consensus 298 ~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gL 377 (387)
.++|+++|+++|++||.|..|+|+. ..||||||||++.++|++|++.+++ +.++.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5689999999999999999999852 1279999999999999999998655 457889
Q ss_pred EEEEeecc
Q 016538 378 RVRLMLRR 385 (387)
Q Consensus 378 rV~L~~~r 385 (387)
+|.++..+
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99987654
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.00 E-value=4.2e-10 Score=94.73 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=61.4
Q ss_pred hceeeeeecCC--Cc--------ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 016538 287 QSRIVVAENLP--ED--------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (387)
Q Consensus 287 ~~rTVyV~nLP--~d--------~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (387)
..++|.++|+= .+ ..+++|++.|++||.|..|++.++. .+|++||+|++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~~ 64 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCPS 64 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECSS
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEECC
Confidence 35567777662 22 1246899999999999999985331 27899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 357 ~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
.++|++|++.|||..+.|+.|+|.++.
T Consensus 65 ~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 65 IAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 999999999999999999999999874
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.1e-09 Score=91.76 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=63.3
Q ss_pred hhceeeeeecCCCc-ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC-HHHHHHH
Q 016538 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKA 363 (387)
Q Consensus 286 ~~~rTVyV~nLP~d-~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes-~E~A~kA 363 (387)
..++.|||+||+.+ +|.++|+++|+.||.|.+|.+.++ ...|||+|.+ .++|.+|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----------------------~~tgfVrf~~~~~~A~~a 72 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----------------------AKEGIILFKEKAKEALGK 72 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----------------------CSEEEEEESSCHHHHHHH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCChHHHHHH
Confidence 35789999999999 999999999999999999998543 2259999999 8999999
Q ss_pred HHHHcCC--CCCCCceEEEEeec
Q 016538 364 IAELNDE--GNWRSGLRVRLMLR 384 (387)
Q Consensus 364 v~~Ln~~--~~~~~gLrV~L~~~ 384 (387)
++.||+. .+.+.-++|.++..
T Consensus 73 v~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 73 AKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp HHHTTTSCBCTTSSSEEEEECCH
T ss_pred HHHhhcCCcEEeCcEEEEEECCC
Confidence 9999644 45556677777653
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=1.8e-08 Score=81.74 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=58.0
Q ss_pred ceeeeeecCCC----cc-c---HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHH
Q 016538 288 SRIVVAENLPE----DH-C---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359 (387)
Q Consensus 288 ~rTVyV~nLP~----d~-T---~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~ 359 (387)
..||+|.-.+. .. . ..+|.+.|+.||+|..||+..+ .+||+|++.++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------------------------~~fVtF~d~~s 61 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------------------------KMWVTFLEGSS 61 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------------------------SEEEEESSHHH
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------------------------CEEEEECChHH
Confidence 45777766541 11 1 3679999999999999999643 28999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeec
Q 016538 360 AEKAIAELNDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 360 A~kAv~~Ln~~~~~~~gLrV~L~~~ 384 (387)
|.+|++ ||+..+.++.|+|.|+.+
T Consensus 62 AlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 62 ALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 999999 999999999999999875
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=4.9e-08 Score=89.50 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=58.5
Q ss_pred ccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 016538 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (387)
Q Consensus 300 ~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV 379 (387)
..+++|++.|++||.|..|.++++...+.. ....+|++||+|++.++|++|++.|||..+.|+.|+|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~-------------~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSST-------------TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCccc-------------CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 346789999999999999999866432110 1123899999999999999999999999999999999
Q ss_pred EEee
Q 016538 380 RLML 383 (387)
Q Consensus 380 ~L~~ 383 (387)
.++.
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9874
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=6.4e-08 Score=79.01 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=58.7
Q ss_pred hceeeeeecCCCc------cc---HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 287 QSRIVVAENLPED------HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 287 ~~rTVyV~nLP~d------~T---~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
...||+|.-++.+ .. ..+|.+.|+.||+|..||+..+ -+||+|.+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~d~ 68 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFADS 68 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECSCS
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEcCh
Confidence 4568888877532 11 2579999999999999999644 289999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 358 ELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 358 E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
++|.+||+ ||+..+.++.|+|.+..
T Consensus 69 ~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 69 HSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 99999998 99999999999999864
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=3e-05 Score=64.91 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=63.7
Q ss_pred hceeeeeecCCCcccHHHHHHHHhcc-----CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~Fs~f-----G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (387)
..|||-+-|||..++...|+.+.+.+ |.++.|-++.+ -+-|+|||++...|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 46899999999999999999999999 99999988643 234999999999999
Q ss_pred HHHHHHcCCCCCCCceEEE
Q 016538 362 KAIAELNDEGNWRSGLRVR 380 (387)
Q Consensus 362 kAv~~Ln~~~~~~~gLrV~ 380 (387)
||.-.|+|..+.++.|++.
T Consensus 77 KasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp HHHHHHSSEEETTEEEEEE
T ss_pred HHHhhcCCeeecCeEEEec
Confidence 9999999999998888875
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.0077 Score=49.69 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=54.3
Q ss_pred ceeeeeecCCCcccHHHHHHHHhcc-----CCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~f-----G~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (387)
.++|.|.|||.++.++.|+-+|+.- |.|+.|... .+.|+|+|.+.+.|++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~~~AvItF~d~~va~r 62 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------GCGGVLTFREPADAER 62 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------TTEEEEEESSHHHHHH
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------CCcEEEEEcChHHHHH
Confidence 5799999999999999999999972 788888763 1359999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEe
Q 016538 363 AIAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 363 Av~~Ln~~~~~~~gLrV~L~ 382 (387)
.++. ....+.+..|.|.-.
T Consensus 63 VL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 63 VLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp HHTC-SCCBSSSSBCEEEEC
T ss_pred HhcC-CcceecCeEEEEEcC
Confidence 8773 245555666776543
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.005 Score=50.88 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred eeeeeecCCCcc-c----HHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 289 RIVVAENLPEDH-C----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 289 rTVyV~nLP~d~-T----~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
.||+|.||+.++ + .+.++++|..|+.+.......- | |. ..|.|.+.|+|.+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--------------------F--RR-irv~F~~~~~A~~A 62 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------------------F--KR-VRINFSNPLSAADA 62 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--------------------T--TE-EEEECSSTTHHHHH
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--------------------c--eE-EEEEeCChHHHHHH
Confidence 589999998875 2 2578999999998877665411 1 11 67999999999999
Q ss_pred HHHHcCCCCCCCceEEEEe
Q 016538 364 IAELNDEGNWRSGLRVRLM 382 (387)
Q Consensus 364 v~~Ln~~~~~~~gLrV~L~ 382 (387)
-..|.+..+.|..|||-..
T Consensus 63 R~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 63 RLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp HHTSTTSEETTEECEEECC
T ss_pred HHHhccceecCceeEEEec
Confidence 9999999998888887654
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.26 E-value=0.01 Score=47.84 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=53.6
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
..|+|++||..+|++++.+.++.+.++...+.+.-+.+.+ . .. -.-|||.|.+.|++....+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-~-----------~~---~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-P-----------HM---YARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-T-----------CC---CEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-C-----------Cc---ceEEEEEeCCHHHHHHHHHHhC
Confidence 3689999999999999999999999888777653322111 0 01 2349999999999999999999
Q ss_pred CCCCC
Q 016538 369 DEGNW 373 (387)
Q Consensus 369 ~~~~~ 373 (387)
|..+-
T Consensus 67 g~~F~ 71 (91)
T 1uw4_A 67 GYVFL 71 (91)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 87443
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.22 E-value=0.009 Score=48.85 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=43.2
Q ss_pred eeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 290 TVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
.+++ +||.+....||+++|+.||-|.--.+ +...|||.|.+.+.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-------------------------dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-------------------------DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-------------------------ETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE-------------------------cCCeEEEEecCHHHHHHHHHhcc
Confidence 3455 99999999999999999996543333 13479999999999999999875
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.07 E-value=0.0024 Score=65.61 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=43.5
Q ss_pred hhhhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 016538 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (387)
Q Consensus 284 ~~~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (387)
++...|+|+|. ++.+.++.+|.++|++||.|.++-+... ...||.|||.+++++..+
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----------------------~g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----------------------FGLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----------------------SSEEEEEECC---CCHHH
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----------------------CCeEEEEEeCCHHHHHHH
Confidence 45567999998 6999999999999999999999988422 135899999999999866
Q ss_pred HH
Q 016538 364 IA 365 (387)
Q Consensus 364 v~ 365 (387)
+.
T Consensus 106 ~~ 107 (464)
T 3pq1_A 106 QN 107 (464)
T ss_dssp HS
T ss_pred Hh
Confidence 54
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.87 E-value=0.028 Score=47.46 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred hhceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 016538 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (387)
...+-|.|-+++... ...+.+.|++||+|...+. +. +.....|.|+++.+|++||.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHH
Confidence 356789999999886 5667788999999998875 21 13568899999999999998
Q ss_pred HHcCCCCCCCceEEEE
Q 016538 366 ELNDEGNWRSGLRVRL 381 (387)
Q Consensus 366 ~Ln~~~~~~~gLrV~L 381 (387)
.|+..+. .++-|.+
T Consensus 78 -kNG~ii~-g~~mIGV 91 (119)
T 1wwh_A 78 -KDGRIFG-ESIMIGV 91 (119)
T ss_dssp -TTTCEET-TTEECEE
T ss_pred -hCCeEec-CCEEEEE
Confidence 4777653 3344444
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.011 Score=48.53 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=42.4
Q ss_pred eeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 291 VyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
|++-+||.+....||+.+|+.||-|.--.+ +...|||.|.+.+.|..|+..++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv~I~Wi-------------------------dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNIQISWI-------------------------DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEEEEEEE-------------------------ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCEEEEEE-------------------------cCCeEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999995432222 13479999999999999999875
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.34 E-value=0.026 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHcCC
Q 016538 346 NKLHAFVEYESVELAEKAIAELNDE 370 (387)
Q Consensus 346 ~KG~aFVEFes~E~A~kAv~~Ln~~ 370 (387)
.+||+||+|.+.++|++|++.+++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 3899999999999999999998854
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.41 E-value=0.069 Score=43.48 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=47.4
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~L 367 (387)
+-.|+|+.||..+|++++.+.++.+=.+...+.+.-+.+ .+. ..+ .-|||.|.+.|+.....+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s----------~~~--~~~---SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS----------LYP--HLY---SRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS----------SCC--SCC---CCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC----------CCC--Ccc---eEEEEEeCCHHHHHHHHHHc
Confidence 347899999999999998888777655443332211110 000 111 23999999999999999999
Q ss_pred cCCCC
Q 016538 368 NDEGN 372 (387)
Q Consensus 368 n~~~~ 372 (387)
+|..+
T Consensus 74 ~g~~F 78 (97)
T 2l08_A 74 DGYIF 78 (97)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 88643
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.38 E-value=0.027 Score=47.87 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=32.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-cCCCCCCCceEEEEeec
Q 016538 347 KLHAFVEYESVELAEKAIAEL-NDEGNWRSGLRVRLMLR 384 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~L-n~~~~~~~gLrV~L~~~ 384 (387)
+|+++|||.+.++|++|++.| |+..+.+ .|+|....+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 899999999999999999999 8888777 777776543
No 222
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.42 E-value=0.39 Score=41.09 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=48.0
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~-Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
...|.|-|+|.+.+.. +-+.|++||.|.. +.+.++.. ..... .++ ..+...|.+.+...|.|++..+|.+||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~--~~~~~-~~~-~k~yP~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQ--AMTVG-LQD-RQFVPIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC---------------CCCCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeecccccccc--ccccc-ccc-ccccCccCCCcEEEEEcCCHHHHHHHHH-
Confidence 3467778998877654 5567999999854 21111000 00000 010 0111334456788999999999999998
Q ss_pred HcCCCCCCC
Q 016538 367 LNDEGNWRS 375 (387)
Q Consensus 367 Ln~~~~~~~ 375 (387)
.|+..+.+.
T Consensus 81 ~NG~ii~G~ 89 (132)
T 3p3d_A 81 ENGAVFNGV 89 (132)
T ss_dssp TTTCEETTE
T ss_pred hCCeEeCcE
Confidence 588776554
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.15 E-value=0.9 Score=46.88 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=47.9
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~Ln 368 (387)
..+++ .++......+|+++|+.||.|.-.++ + ..+|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v-~f~~~~~~~~i~~~fs~fg~v~V~wi--d-----------------------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--D-----------------------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEE-ECCTTCCHHHHHHHGGGGCCCEEEEC--S-----------------------SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEE-eCCCCCCHHHHHHHHHhcCCEEEEEE--c-----------------------CCeEEEEECCHHHHHHHHHHHH
Confidence 34444 48888888999999999997643333 1 3469999999999999999997
Q ss_pred CCCCCCCceEEEEe
Q 016538 369 DEGNWRSGLRVRLM 382 (387)
Q Consensus 369 ~~~~~~~gLrV~L~ 382 (387)
.. .+++|+..
T Consensus 495 ~~----~~~~i~~y 504 (507)
T 3d45_A 495 YA----ESYRIQTY 504 (507)
T ss_dssp TC----SSCEECSC
T ss_pred hC----CceEEEec
Confidence 54 35666543
No 224
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=82.01 E-value=0.93 Score=49.93 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=64.1
Q ss_pred CCChHHHHHHhhcccccccCCCcCCCHH----HHhhhcC--CCCCceecccccchh-hhHHhhcc------------HHH
Q 016538 192 GLNDESIQKVLNQVEYYFSDLNLATTDH----LIRFILK--DPEGYVPISTVASFK-KIKAIISS------------HSH 252 (387)
Q Consensus 192 ~lt~e~~~kI~kQvEyYFSD~NL~~D~f----L~~~i~k--~~eG~Vpi~~i~sFk-KmK~Lt~d------------~~~ 252 (387)
..++|..+.|+..|+|.|+|+=|.-+.- |+-.+.+ +-.|.||+.+|+.|. |+..+.+- .+.
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 3457778999999999999997766643 3333333 356899999999984 55554432 256
Q ss_pred HHHhhhcccceEEeecccccccCCCCcch
Q 016538 253 LASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (387)
Q Consensus 253 I~eALr~S~~LeVsedgkkVRR~~Pl~e~ 281 (387)
|.+|...+.-+.+++.+ -|+|.+|++..
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 67777777655677777 99999998854
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.76 E-value=0.7 Score=37.28 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred hhceeeeeecCCCcccHHH
Q 016538 286 LQSRIVVAENLPEDHCHQN 304 (387)
Q Consensus 286 ~~~rTVyV~nLP~d~T~e~ 304 (387)
....+|||+||+.++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999998763
No 226
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=79.17 E-value=0.89 Score=27.90 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.5
Q ss_pred cccccCCCCCCCCCCCC
Q 016538 37 FSRLNAKAPEFVPTRNP 53 (387)
Q Consensus 37 ~~~~~~~ap~~~p~~~~ 53 (387)
.|+|.+.||||+|+.=.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 58899999999998754
No 227
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=75.87 E-value=0.38 Score=42.96 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCChHHHHHHhhcccccccCCCcCCCHHHHhhhcC-----CC-C--Cceecccccc
Q 016538 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK-----DP-E--GYVPISTVAS 239 (387)
Q Consensus 192 ~lt~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k-----~~-e--G~Vpi~~i~s 239 (387)
.++.+.++.+.+.. .|+...+.+=..++..+.. +. + |+|..+.+..
T Consensus 30 ~l~~e~l~~l~~~t--~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 30 RLSKELLAEYQDLT--FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp -CCHHHHHHHHSCC--SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 36777777777653 4555444332223333332 22 4 9998887776
No 228
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=63.33 E-value=3.2 Score=37.37 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.9
Q ss_pred hcCCCCCceecccccchhhhH--HhhccHHHHHHhhhcccc--eEEeecccccccCC
Q 016538 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (387)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkKmK--~Lt~d~~~I~eALr~S~~--LeVsedgkkVRR~~ 276 (387)
+..|.+|||+++.++. .+.+ ...-+.+.|.++++++.+ .++++ .+||-.+
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA~q 75 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRARY 75 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEESS
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEecc
Confidence 3468999999999997 3333 234467788888876654 66664 3676554
No 229
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=50.18 E-value=3.4 Score=40.94 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.1
Q ss_pred ceeeeeecCCC
Q 016538 288 SRIVVAENLPE 298 (387)
Q Consensus 288 ~rTVyV~nLP~ 298 (387)
.+.||++.+.+
T Consensus 264 g~ILfLEdv~E 274 (371)
T 3tla_A 264 GDILFIEDSRK 274 (371)
T ss_dssp TCEEEEECBSC
T ss_pred CeEEEEEeCCC
Confidence 45566665544
No 230
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=47.56 E-value=6.1 Score=37.41 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=17.2
Q ss_pred CCCCCCChHHHHHHhhccccc
Q 016538 188 HQHGGLNDESIQKVLNQVEYY 208 (387)
Q Consensus 188 ~~~~~lt~e~~~kI~kQvEyY 208 (387)
...+.++-.++..+++-||-|
T Consensus 31 ~~h~plspr~l~~~~k~ve~~ 51 (262)
T 1d1d_A 31 PAWTPLEPKLITRLADTVRTK 51 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHc
Confidence 488999999999999999765
No 231
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=47.27 E-value=19 Score=35.27 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=18.5
Q ss_pred eeeeeecCCCcccHHHHHHHHhc
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSA 311 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~ 311 (387)
...+|.|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 45789999999998877777763
No 232
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=45.60 E-value=64 Score=22.73 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=41.6
Q ss_pred ceeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 016538 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (387)
Q Consensus 288 ~rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (387)
..++.|.|+.=..+...|++.+.+ .-|..+.+-.. .+.+.|+|++.++..++|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 457889999888899999999999 88988887321 34577898855566666654
No 233
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=41.97 E-value=5.4 Score=36.37 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=7.2
Q ss_pred CCCChHHHHHHhhcc
Q 016538 191 GGLNDESIQKVLNQV 205 (387)
Q Consensus 191 ~~lt~e~~~kI~kQv 205 (387)
.++..|+.+.|.+++
T Consensus 78 ~G~~~dl~~~i~~~~ 92 (291)
T 2yjp_A 78 QGFDVEIAKDLAKDL 92 (291)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHh
Confidence 344455555554443
No 234
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=41.93 E-value=45 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred eeeeeecCCC----cccHHHHHHHHhccCCeeEEEE
Q 016538 289 RIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (387)
Q Consensus 289 rTVyV~nLP~----d~T~e~L~e~Fs~fG~V~~Vrl 320 (387)
.-|++.|+|. +++.+.|.++..++..|.-|+-
T Consensus 151 lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKd 186 (315)
T 3na8_A 151 VPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKE 186 (315)
T ss_dssp SCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEE
T ss_pred CcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEEC
Confidence 4577888875 4567777777667887776664
No 235
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=40.61 E-value=5.8 Score=37.85 Aligned_cols=8 Identities=63% Similarity=0.754 Sum_probs=3.5
Q ss_pred HHHHHHcC
Q 016538 362 KAIAELND 369 (387)
Q Consensus 362 kAv~~Ln~ 369 (387)
+|+..||+
T Consensus 309 kaL~~lN~ 316 (379)
T 3uau_A 309 KALAILNN 316 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 44444444
No 236
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=39.73 E-value=88 Score=21.33 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=28.1
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEe
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~ 321 (387)
.++.|.|+.-..+...+++.+.+..-|..+.+-
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 36 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVN 36 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEE
Confidence 467888988888899999999999889888874
No 237
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=35.45 E-value=7.9 Score=37.37 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.3
Q ss_pred HHHHHhccC
Q 016538 305 LMKIFSAVG 313 (387)
Q Consensus 305 L~e~Fs~fG 313 (387)
|+++=+.||
T Consensus 219 ikeygkdyg 227 (564)
T 4faj_A 219 IKEYGKDYG 227 (564)
T ss_dssp HHHHGGGTT
T ss_pred HHHhccccC
Confidence 333333333
No 238
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=34.37 E-value=52 Score=31.18 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=14.6
Q ss_pred hceeeeeecCCCcccHHHHHHHH
Q 016538 287 QSRIVVAENLPEDHCHQNLMKIF 309 (387)
Q Consensus 287 ~~rTVyV~nLP~d~T~e~L~e~F 309 (387)
..++|.|..=--.+|.++|...|
T Consensus 128 ~~~tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 128 EKKTLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHH
Confidence 34677776555567777776544
No 239
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=34.37 E-value=8.3 Score=30.35 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=18.1
Q ss_pred ecCCCcccHHHHHHHHhccCC
Q 016538 294 ENLPEDHCHQNLMKIFSAVGS 314 (387)
Q Consensus 294 ~nLP~d~T~e~L~e~Fs~fG~ 314 (387)
+++....++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 567778889999999999994
No 240
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=32.32 E-value=9.5 Score=37.23 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=6.4
Q ss_pred HHhhccccccc
Q 016538 200 KVLNQVEYYFS 210 (387)
Q Consensus 200 kI~kQvEyYFS 210 (387)
.++.-.+||+|
T Consensus 84 ~lR~~FDYfLs 94 (332)
T 2es4_D 84 AVREFFDYCLT 94 (332)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35555566666
No 241
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=30.54 E-value=11 Score=34.26 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=5.9
Q ss_pred CCChHHHHHHhhc
Q 016538 192 GLNDESIQKVLNQ 204 (387)
Q Consensus 192 ~lt~e~~~kI~kQ 204 (387)
++..++.+.|.+.
T Consensus 81 G~~~dl~~~i~~~ 93 (283)
T 2yln_A 81 GYDVEVTRAVAEK 93 (283)
T ss_dssp SHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHH
Confidence 4444454444443
No 242
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=30.43 E-value=11 Score=33.62 Aligned_cols=10 Identities=0% Similarity=0.212 Sum_probs=6.4
Q ss_pred HHHHHHHHhc
Q 016538 302 HQNLMKIFSA 311 (387)
Q Consensus 302 ~e~L~e~Fs~ 311 (387)
..+|+++.++
T Consensus 137 L~EIRDlLk~ 146 (174)
T 2oar_A 137 LTEIRDLLAQ 146 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4567777765
No 243
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=29.11 E-value=12 Score=35.83 Aligned_cols=6 Identities=0% Similarity=0.750 Sum_probs=2.5
Q ss_pred CChHHH
Q 016538 193 LNDESI 198 (387)
Q Consensus 193 lt~e~~ 198 (387)
+++++.
T Consensus 29 ld~~tV 34 (379)
T 3uau_A 29 IDEKTV 34 (379)
T ss_dssp SCHHHH
T ss_pred ccHHHH
Confidence 344443
No 244
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=29.01 E-value=1.4e+02 Score=20.54 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.1
Q ss_pred eeeeeecCCCcccHHHHHHHHhccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeC----CHHHHHHHH
Q 016538 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKAI 364 (387)
Q Consensus 289 rTVyV~nLP~d~T~e~L~e~Fs~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFe----s~E~A~kAv 364 (387)
.++.|.|+.=..+...+++.+.+..-|..+.+-.. .+.+.|+|+ +.++..+++
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 60 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEEI 60 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 46788998888888999999999888888887322 335788986 455666666
Q ss_pred HH
Q 016538 365 AE 366 (387)
Q Consensus 365 ~~ 366 (387)
+.
T Consensus 61 ~~ 62 (74)
T 3dxs_X 61 ED 62 (74)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 245
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.64 E-value=12 Score=36.95 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=4.6
Q ss_pred HHHHHHhhccc
Q 016538 196 ESIQKVLNQVE 206 (387)
Q Consensus 196 e~~~kI~kQvE 206 (387)
+..++.++.||
T Consensus 61 ~~~~~~~~~L~ 71 (371)
T 3tla_A 61 NRFFRGVEFLQ 71 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 246
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=28.48 E-value=12 Score=36.08 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=13.5
Q ss_pred EEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 351 FVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 351 FVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
+|||... .|+.-......+....+...+.|+.
T Consensus 386 lvefnkk-qaeeywdkakkeidlskntsldllv 417 (564)
T 4faj_A 386 LVEFNKK-QAEEYWDKAKKEIDLSKNTSLDLLV 417 (564)
T ss_dssp CCCCCHH-HHHHHHHHHHTTSCTTTCCEEEEEE
T ss_pred HHHhhHH-hHHHHHHHhhhhcccccCcceeeEe
Confidence 5677643 2333333223222233444555544
No 247
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=28.27 E-value=12 Score=33.91 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=3.3
Q ss_pred hhceeeee
Q 016538 286 LQSRIVVA 293 (387)
Q Consensus 286 ~~~rTVyV 293 (387)
+.+++|-+
T Consensus 162 L~gk~v~~ 169 (291)
T 2yjp_A 162 LKDQTLLV 169 (291)
T ss_dssp GTTSEEEE
T ss_pred hCCCEEEE
Confidence 33444433
No 248
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=27.99 E-value=18 Score=33.84 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=11.5
Q ss_pred CCCCCChHHHHHHhhccccc
Q 016538 189 QHGGLNDESIQKVLNQVEYY 208 (387)
Q Consensus 189 ~~~~lt~e~~~kI~kQvEyY 208 (387)
...++|.+..+-|.+-|+++
T Consensus 38 ~~~~lt~e~~~li~~lv~a~ 57 (283)
T 3ipq_A 38 ILPQLSPEQLGMIEKLVAAQ 57 (283)
T ss_dssp ---CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 45567878777666666554
No 249
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=27.98 E-value=12 Score=36.38 Aligned_cols=9 Identities=11% Similarity=-0.138 Sum_probs=3.3
Q ss_pred Hhhcccccc
Q 016538 201 VLNQVEYYF 209 (387)
Q Consensus 201 I~kQvEyYF 209 (387)
|..+|.-|.
T Consensus 104 i~~~v~~~i 112 (332)
T 2es4_D 104 LDALVRREI 112 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 250
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=27.80 E-value=13 Score=35.60 Aligned_cols=9 Identities=0% Similarity=0.084 Sum_probs=3.9
Q ss_pred HHHHHhccC
Q 016538 305 LMKIFSAVG 313 (387)
Q Consensus 305 L~e~Fs~fG 313 (387)
++++.+.+|
T Consensus 236 v~~~a~~~~ 244 (314)
T 3fwy_A 236 VDRFCKETN 244 (314)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 344444444
No 251
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=27.65 E-value=13 Score=34.14 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=8.3
Q ss_pred eCCHHHHHHHHHHH
Q 016538 354 YESVELAEKAIAEL 367 (387)
Q Consensus 354 Fes~E~A~kAv~~L 367 (387)
|-+.|++-+++..|
T Consensus 251 ~~~~~dvA~~~~~l 264 (285)
T 2c07_A 251 MGTPEEVANLACFL 264 (285)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45666666665544
No 252
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=27.17 E-value=13 Score=33.32 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (236)
T 2px7_A 3 HHHHHHHHHHSSGH 16 (236)
T ss_dssp --------------
T ss_pred ccccccccccccCC
No 253
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=27.01 E-value=15 Score=35.70 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (315)
T 1uoz_A 3 HHHHHHHHHHSSGH 16 (315)
T ss_dssp ------------CC
T ss_pred cccccccccccCCc
No 254
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=26.91 E-value=13 Score=36.48 Aligned_cols=6 Identities=67% Similarity=1.060 Sum_probs=0.0
Q ss_pred CCCCCC
Q 016538 147 HHHRHQ 152 (387)
Q Consensus 147 ~~~~~~ 152 (387)
|||..|
T Consensus 9 ~~~~~~ 14 (380)
T 3c3r_A 9 HHHSGQ 14 (380)
T ss_dssp ------
T ss_pred cccccc
Confidence 344444
No 255
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=26.71 E-value=14 Score=36.05 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (332)
T 4axs_A 3 HHHHHHHHHHSSGH 16 (332)
T ss_dssp --------------
T ss_pred cccccccccccccc
No 256
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=26.60 E-value=14 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=0.0
Q ss_pred CcccccccccCCCCC
Q 016538 131 HHQQHQQHQHHRNHN 145 (387)
Q Consensus 131 ~~~~~~~~~~~~~~~ 145 (387)
|||+||||||...|.
T Consensus 3 ~~~~~~~~~~~~~~~ 17 (288)
T 1jxh_A 3 HHHHHHHHHHSSGYH 17 (288)
T ss_dssp ---------------
T ss_pred cccccccccccCccc
No 257
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=26.60 E-value=14 Score=33.22 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (221)
T 2c0d_A 3 HHHHHHHHHHSSGH 16 (221)
T ss_dssp --------------
T ss_pred cccccccccccccc
No 258
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.47 E-value=14 Score=33.87 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (223)
T 3dfz_A 3 HHHHHHHHHHSSGH 16 (223)
T ss_dssp --------------
T ss_pred ccccccccccccCc
No 259
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=26.46 E-value=18 Score=36.22 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=16.0
Q ss_pred eeeeeecCC--Cc--ccHHHHHHH---HhccCCeeEEEE
Q 016538 289 RIVVAENLP--ED--HCHQNLMKI---FSAVGSVKTIRT 320 (387)
Q Consensus 289 rTVyV~nLP--~d--~T~e~L~e~---Fs~fG~V~~Vrl 320 (387)
+.|++.+.. .. .+.++|+++ ..++|-+.-+.-
T Consensus 239 k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~De 277 (500)
T 3tcm_A 239 RALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADE 277 (500)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred eEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 456665431 11 234555544 667776555543
No 260
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=26.10 E-value=14 Score=34.74 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHcCC
Q 016538 355 ESVELAEKAIAELNDE 370 (387)
Q Consensus 355 es~E~A~kAv~~Ln~~ 370 (387)
.+.+++.++++.|...
T Consensus 249 ~~~~~~~~~~~~l~~~ 264 (299)
T 3cio_A 249 NTAKEVSLSMQRLEQA 264 (299)
T ss_dssp SCTTHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhC
Confidence 3456777888777654
No 261
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.73 E-value=44 Score=24.56 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=26.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 016538 347 KLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~Ln~~~~~~~gLrV~L~~ 383 (387)
..|.||+-... .|+++++.|++....++.++|+.+.
T Consensus 40 d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 40 DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 34689998764 5678999999988888888888764
No 262
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=25.50 E-value=15 Score=36.68 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (389)
T 3a5i_A 3 HHHHHHHHHHSSGH 16 (389)
T ss_dssp --------------
T ss_pred ccccccccccccCC
No 263
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=24.76 E-value=16 Score=38.14 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (560)
T 3odm_A 3 HHHHHHHHHHSSGH 16 (560)
T ss_dssp --------------
T ss_pred ccccccccccccCC
No 264
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=24.72 E-value=42 Score=20.21 Aligned_cols=16 Identities=50% Similarity=0.571 Sum_probs=13.5
Q ss_pred CcccccCCCCCCCCCC
Q 016538 36 SFSRLNAKAPEFVPTR 51 (387)
Q Consensus 36 ~~~~~~~~ap~~~p~~ 51 (387)
+-|-||..|=||+|+.
T Consensus 2 ~ks~lnp~akef~pgv 17 (26)
T 1jgn_B 2 VKSNLNPNAKEFVPGV 17 (26)
T ss_dssp CCCSSCTTCCCCCTTS
T ss_pred ccccCCcchhhcCCCc
Confidence 4578999999999975
No 265
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=24.67 E-value=16 Score=33.10 Aligned_cols=6 Identities=0% Similarity=-0.114 Sum_probs=2.4
Q ss_pred hceeee
Q 016538 287 QSRIVV 292 (387)
Q Consensus 287 ~~rTVy 292 (387)
..++|-
T Consensus 163 ~G~~v~ 168 (283)
T 2yln_A 163 KGVKTA 168 (283)
T ss_dssp TTSEEE
T ss_pred CCCEEE
Confidence 344443
No 266
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=24.28 E-value=16 Score=36.98 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (467)
T 2axq_A 3 HHHHHHHHHHSSGH 16 (467)
T ss_dssp --------------
T ss_pred cccccccccccCCc
No 267
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=23.81 E-value=17 Score=33.77 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 016538 130 YHHQQHQQHQ 139 (387)
Q Consensus 130 ~~~~~~~~~~ 139 (387)
||||+|||||
T Consensus 3 ~~~~~~~~~~ 12 (286)
T 1jr2_A 3 HHHHHHHHHH 12 (286)
T ss_dssp ----------
T ss_pred cccccccccc
No 268
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=23.64 E-value=17 Score=36.36 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 016538 150 RHQNHHHN 157 (387)
Q Consensus 150 ~~~~~~~~ 157 (387)
+|-++++.
T Consensus 15 ~~~~~~~~ 22 (433)
T 4e4j_A 15 GHIDDDDK 22 (433)
T ss_dssp --------
T ss_pred cccCcchh
Confidence 44554443
No 269
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.40 E-value=2e+02 Score=25.28 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=32.9
Q ss_pred eeeeecCCCc---------ccHHHHHHHH--hccCCeeEEEEeCCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 016538 290 IVVAENLPED---------HCHQNLMKIF--SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (387)
Q Consensus 290 TVyV~nLP~d---------~T~e~L~e~F--s~fG~V~~Vrl~~p~~~~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (387)
+++|-|++.. .+-++|++.| +.|..++..-+ ... .++.|+++|+|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~-------------------~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY-------------------LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS-------------------SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC-------------------CCCceeEEEEecCC
Confidence 6777888762 3447899977 99988764444 221 12478999999984
No 270
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.28 E-value=22 Score=27.11 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=14.7
Q ss_pred HHhhhcCCCCCceecccccch
Q 016538 220 LIRFILKDPEGYVPISTVASF 240 (387)
Q Consensus 220 L~~~i~k~~eG~Vpi~~i~sF 240 (387)
+++.+.++.+|+|..+.+..+
T Consensus 15 ~F~~~D~d~dG~I~~~el~~~ 35 (95)
T 1c07_A 15 IFLKTDKDMDGFVSGLEVREI 35 (95)
T ss_dssp HHHHHCTTCSSEECHHHHHHH
T ss_pred HHHHhCCCCCCcEeHHHHHHH
Confidence 445556788999988766554
No 271
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=23.18 E-value=17 Score=35.75 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (395)
T 3b9f_I 3 HHHHHHHHHHSSGH 16 (395)
T ss_dssp --------------
T ss_pred ccccccccccCCCC
No 272
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=22.83 E-value=18 Score=38.96 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 016538 130 YHHQQHQQHQ 139 (387)
Q Consensus 130 ~~~~~~~~~~ 139 (387)
||||||||||
T Consensus 715 ~~~~~~~~~~ 724 (724)
T 3rce_A 715 HHHHHHHHHH 724 (724)
T ss_dssp ----------
T ss_pred hcccccccCC
No 273
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=22.29 E-value=19 Score=36.01 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (394)
T 2qrj_A 3 HHHHHHHHHHSSGH 16 (394)
T ss_dssp --------------
T ss_pred cccccccccccCCC
No 274
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=22.26 E-value=19 Score=34.16 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (268)
T 3k9f_C 3 HHHHHHHHHHSSGH 16 (268)
T ss_dssp --------------
T ss_pred ccccccccccccCC
No 275
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=22.23 E-value=19 Score=31.66 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHhhhcCCCCCc-eecccccch
Q 016538 219 HLIRFILKDPEGY-VPISTVASF 240 (387)
Q Consensus 219 fL~~~i~k~~eG~-Vpi~~i~sF 240 (387)
.|++.+..+.+|. |.+..++.+
T Consensus 95 ~lf~~~D~d~dG~~I~f~EF~~~ 117 (214)
T 2l4h_A 95 RICRVFSTSPAKDSLSFEDFLDL 117 (214)
T ss_dssp HHHHHHCCSSSCCSEEHHHHHHH
T ss_pred HHHHHhCcCCCCCEecHHHHHHH
Confidence 4556666677887 877655543
No 276
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=22.05 E-value=19 Score=36.80 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (580)
T 3etc_A 3 HHHHHHHHHHSSGH 16 (580)
T ss_dssp --------------
T ss_pred ccccccccccccCC
No 277
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=21.61 E-value=19 Score=34.51 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=0.0
Q ss_pred CcccccccccCCCC
Q 016538 131 HHQQHQQHQHHRNH 144 (387)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (387)
|||+||||||...|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (374)
T 2xci_A 3 HHHHHHHHHHSSGH 16 (374)
T ss_dssp --------------
T ss_pred ccccccccccccCc
No 278
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.27 E-value=20 Score=33.68 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.2
Q ss_pred ceEEeec
Q 016538 262 KLVVSED 268 (387)
Q Consensus 262 ~LeVsed 268 (387)
.|-|+.|
T Consensus 136 VLLID~D 142 (299)
T 3cio_A 136 VLFIDAD 142 (299)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 3444444
No 279
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=21.24 E-value=20 Score=36.69 Aligned_cols=6 Identities=0% Similarity=-0.119 Sum_probs=2.6
Q ss_pred CCHHHH
Q 016538 216 TTDHLI 221 (387)
Q Consensus 216 ~D~fL~ 221 (387)
||..++
T Consensus 99 R~~~~F 104 (514)
T 2r9r_B 99 RNRPSF 104 (514)
T ss_dssp SCHHHH
T ss_pred CChHHH
Confidence 564333
No 280
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.19 E-value=20 Score=34.16 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=3.5
Q ss_pred CCCCChHH
Q 016538 190 HGGLNDES 197 (387)
Q Consensus 190 ~~~lt~e~ 197 (387)
+.++-+.+
T Consensus 56 KGGVGKTT 63 (314)
T 3fwy_A 56 KGGIGKST 63 (314)
T ss_dssp STTSSHHH
T ss_pred CCccCHHH
Confidence 44444433
No 281
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=20.16 E-value=22 Score=35.08 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=14.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcC
Q 016538 347 KLHAFVEYESVELAEKAIAELND 369 (387)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~Ln~ 369 (387)
+|.+|+.=-+..-|++.++...+
T Consensus 212 rG~a~~~~v~~~va~R~~~~ar~ 234 (358)
T 3tut_A 212 RGEVLLAGVPRHVAEREIATLAG 234 (358)
T ss_dssp EEEEEEESSCHHHHHHHHHHHBT
T ss_pred EEEEEEcCCChHHHHHHHHHHHh
Confidence 56666666666666666665543
No 282
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=20.06 E-value=23 Score=31.26 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=0.4
Q ss_pred CCCccccccccc
Q 016538 129 NYHHQQHQQHQH 140 (387)
Q Consensus 129 ~~~~~~~~~~~~ 140 (387)
|+.-+-||||||
T Consensus 163 ny~~~~~~~~~~ 174 (178)
T 3ga4_A 163 NVQEEFHHHHHH 174 (178)
T ss_dssp C-----------
T ss_pred ChHHhhhhcccc
Confidence 444433443333
No 283
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=20.05 E-value=29 Score=31.95 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=0.0
Q ss_pred CcccccccccC
Q 016538 131 HHQQHQQHQHH 141 (387)
Q Consensus 131 ~~~~~~~~~~~ 141 (387)
|||+||||||.
T Consensus 2 ~~~~~~~~~~~ 12 (235)
T 1qwz_A 2 HHHHHHHHHHS 12 (235)
T ss_dssp CCSSSSCCCCS
T ss_pred Ccccccccccc
Done!