BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016539
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
           Alpha-ketoacid Dehydrogenase Kinase In Complex With
           3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
          Length = 418

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 262 APMMMLFPGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGARHVFFLL 321
            P MML+ G + +G +LL  K+G +L +   LPV + +           I G R + F++
Sbjct: 71  TPTMMLYSGRSQDGSHLL--KSGRYLQQE--LPVRIAH----------RIKGFRSLPFII 116

Query: 322 -CQ-FVNHIEVTSLPVYH-----PSQQEKDDPKLYAENVRRLMASERNLI-LSDIGLAEK 373
            C   + H+    +  +      P  +++ D   Y + VR+L+   ++++ L   GL E 
Sbjct: 117 GCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRES 176

Query: 374 R 374
           R
Sbjct: 177 R 177


>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
           Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
 pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
           Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
 pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
           Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
           With Adp
 pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
           Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
          Length = 418

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 262 APMMMLFPGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGARHVFFLL 321
            P MML+ G + +G +LL  K+G +L +   LPV + +           I G R + F++
Sbjct: 71  TPTMMLYSGRSQDGSHLL--KSGRYLQQE--LPVRIAH----------RIKGFRSLPFII 116

Query: 322 -CQ-FVNHIEVTSLPVYH-----PSQQEKDDPKLYAENVRRLMASERNLI-LSDIGLAEK 373
            C   + H+    +  +      P  +++ D   Y + VR+L+   ++++ L   GL E 
Sbjct: 117 GCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRES 176

Query: 374 R 374
           R
Sbjct: 177 R 177


>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
           Complxed With Atp-gamma-s
 pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
 pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
           Complxed With Adp
          Length = 388

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 262 APMMMLFPGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGARHVFFLL 321
            P MML+ G + +G +LL  K+G +L +   LPV + +           I G R + F++
Sbjct: 41  TPTMMLYSGRSQDGSHLL--KSGRYLQQE--LPVRIAH----------RIKGFRSLPFII 86

Query: 322 -CQ-FVNHIEVTSLPVYH-----PSQQEKDDPKLYAENVRRLMASERNLI-LSDIGLAEK 373
            C   + H+    +  +      P  +++ D   Y + VR+L+   ++++ L   GL E 
Sbjct: 87  GCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRES 146

Query: 374 R 374
           R
Sbjct: 147 R 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,983,608
Number of Sequences: 62578
Number of extensions: 376222
Number of successful extensions: 589
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 3
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)