Query 016539
Match_columns 387
No_of_seqs 304 out of 2260
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.8 1.4E-20 4.9E-25 180.3 -0.6 204 129-362 95-342 (367)
2 3ry0_A Putative tautomerase; o 8.5 3.1E+02 0.01 18.2 3.3 36 328-368 3-38 (65)
3 2lnd_A De novo designed protei 8.1 2.5E+02 0.0087 20.4 2.7 20 344-363 86-105 (112)
4 3nku_A DRRA, SIDM; posttransla 7.6 1.3E+02 0.0044 24.3 1.0 29 20-48 12-40 (213)
5 3m21_A Probable tautomerase HP 7.2 3.7E+02 0.013 17.9 3.2 26 343-368 16-41 (67)
6 2hjq_A Hypothetical protein YQ 6.9 1E+02 0.0035 23.4 0.1 10 2-11 59-68 (111)
7 2i9n_A MHB4A peptide; beta-hai 6.7 2.3E+02 0.008 16.2 1.5 17 343-359 16-32 (33)
8 3mb2_A 4-oxalocrotonate tautom 6.5 3.7E+02 0.013 18.2 3.0 36 328-368 4-39 (72)
9 3abf_A 4-oxalocrotonate tautom 6.3 3.9E+02 0.013 17.2 3.0 24 344-367 15-38 (64)
10 1otf_A 4-oxalocrotonate tautom 6.2 2.6E+02 0.0087 18.0 1.9 25 344-368 14-38 (62)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.77 E-value=1.4e-20 Score=180.30 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhcceEEEEEeeeecchhhhhhhhhhccCcccccccccCCCCCCCeEEEecCCcccchhhhcccc---
Q 016539 129 VVTGRFLSRVMLFVLGFYWITETFRILDVQEKSENEAKNQSKDEDEAKDQDEESGRPGAIISNHVSYLDILYHMSSS--- 205 (387)
Q Consensus 129 ~~~~~~~~r~~l~~~G~~~i~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~IiVaNH~S~lD~l~l~~~~--- 205 (387)
+.+++.|.|.++...|.. |.|.... .+++ |+ .+.++++|++|||+|.+|++++....
T Consensus 95 y~~~~~~ir~li~~~~s~---V~G~e~~--------~~~~---E~------l~~~~~vIfisNHQS~~D~~vi~~~l~~~ 154 (367)
T 1iuq_A 95 YIFGQNYIRPLIDFGNSF---VGNLSLF--------KDIE---EK------LQQGHNVVLISNHQTEADPAIISLLLEKT 154 (367)
T ss_dssp HHHHHHHHGGGBCGGGCE---EECHHHH--------HHHH---HH------HHTTCEEEEEECCCCTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhcCCE---eecchhh--------hhHH---hh------ccCCCcEEEEECCccchhHHHHHHHHhhc
Confidence 445677778777777765 5553221 0111 22 24568999999999999999988776
Q ss_pred ------CceEEEecccccccHHHHHH--HhcCceEEeCC----------CCCccccchHHHHHHHHHHHHhCCCCCeEEE
Q 016539 206 ------FPSFVAKRSVAKLPLVGLIS--KCLGCVYVQRE----------SKSSDFKGVSGVVTERVREAHRDKSAPMMML 267 (387)
Q Consensus 206 ------~~~fvak~~l~~~P~~g~~~--~~~g~i~v~R~----------~~~~~~~~~~~~i~~~l~~~~~~~~g~~l~I 267 (387)
...||||+++.+.|++..+. +.++||+..+. +.+.+.+++. .+.+.+++ .|..++|
T Consensus 155 ~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~-~~~~~Lk~-----GG~sI~I 228 (367)
T 1iuq_A 155 NPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLK-EMALLLRG-----GSQLIWI 228 (367)
T ss_dssp CHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHH-HHHHHHHH-----CCCEEEE
T ss_pred ccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhhhHHHHHHHH-HHHHHHHc-----CCeEEEE
Confidence 46999999999777764321 34567776332 2211222111 22333332 2568999
Q ss_pred Ee-CcccCC----CC--ccccccccc----c----CCCC--EEEEEEEcCCCCCCCccccccchhHHHHHhhcCccEEEE
Q 016539 268 FP-GTTTNG----DY--LLPFKTGAF----L----ARAP--VLPVILRYPYQRFSPAWDSISGARHVFFLLCQFVNHIEV 330 (387)
Q Consensus 268 FP-GT~sn~----~~--ll~Fk~Gaf----~----~~~p--V~PV~I~y~~~~~~~~w~~~~~~~~l~~~l~~~~~~v~V 330 (387)
|| |||+++ +. ..+||.|+| . +++| |+||+|. ++..+++.-.. -..+..-....++.|.|
T Consensus 229 FPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~imppp~~v---e~~~g~~r~i~~~~V~v 304 (367)
T 1iuq_A 229 APSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPPPSQV---EIEIGEKRVIAFNGAGL 304 (367)
T ss_dssp CTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSCCC-------------CCCCCBCCEE
T ss_pred eCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccCCcccc---cccccccceeecccEEE
Confidence 99 999996 33 455999999 3 9999 9999999 66655431000 00000000113468999
Q ss_pred EEcCccCCCCCC------CCCHHHHHHHHHHHHHHhhC
Q 016539 331 TSLPVYHPSQQE------KDDPKLYAENVRRLMASERN 362 (387)
Q Consensus 331 ~~lppi~~~~~~------~~~~~~la~~vr~~ma~~l~ 362 (387)
.+++||+++++. +++.+.+++.|++.|++.+.
T Consensus 305 ~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y~ 342 (367)
T 1iuq_A 305 SVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYN 342 (367)
T ss_dssp EECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCccchhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999866532 22345688999999988763
No 2
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=8.50 E-value=3.1e+02 Score=18.16 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=25.4
Q ss_pred EEEEEcCccCCCCCCCCCHHHHHHHHHHHHHHhhCcccccc
Q 016539 328 IEVTSLPVYHPSQQEKDDPKLYAENVRRLMASERNLILSDI 368 (387)
Q Consensus 328 v~V~~lppi~~~~~~~~~~~~la~~vr~~ma~~l~~~~~~~ 368 (387)
++|.+.+- .+.+..+++++.+.+.+.+.+|++..+.
T Consensus 3 i~I~~~~G-----rs~eqk~~L~~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 3 IRVTLLEG-----RSPQEVAALGEALTAAAHETLGTPVEAV 38 (65)
T ss_dssp EEEEEESC-----CCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred EEEEEcCC-----CCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 45555543 2234577899999999999999876543
No 3
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=8.13 E-value=2.5e+02 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHhhCc
Q 016539 344 DDPKLYAENVRRLMASERNL 363 (387)
Q Consensus 344 ~~~~~la~~vr~~ma~~l~~ 363 (387)
.|++++..+||+-+..++.+
T Consensus 86 tdpeeltqrvreflktagsl 105 (112)
T 2lnd_A 86 TDPEELTQRVREFLKTAGSL 105 (112)
T ss_dssp CCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 47899999999988876544
No 4
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=7.63 E-value=1.3e+02 Score=24.34 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCccccccHHHHhhccC
Q 016539 20 DDGGSAKDDRPLLKPDAADNIQELEKKFA 48 (387)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (387)
+.--+++.++|||++-+....||.+.|.+
T Consensus 12 gslysderdkpllsptaqkkfeeyqnkla 40 (213)
T 3nku_A 12 GSLYSDERDKPLLSPTAQKKFEEYQNKLA 40 (213)
T ss_dssp CCTTSCTTTCCSCCHHHHHHHHHHHHHHH
T ss_pred cccccccccCccCChhHHHHHHHHHHHHH
Confidence 33445678999999987766666665544
No 5
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=7.24 E-value=3.7e+02 Score=17.91 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHHhhCcccccc
Q 016539 343 KDDPKLYAENVRRLMASERNLILSDI 368 (387)
Q Consensus 343 ~~~~~~la~~vr~~ma~~l~~~~~~~ 368 (387)
.+..+++++.+.+.+++.++++..+.
T Consensus 16 ~eqK~~l~~~lt~~l~~~lg~p~~~v 41 (67)
T 3m21_A 16 NEQKQQLIEGVSDLMVKVLNKNKASI 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccE
Confidence 34567899999999999999875543
No 6
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=6.90 E-value=1e+02 Score=23.44 Aligned_cols=10 Identities=60% Similarity=0.767 Sum_probs=5.9
Q ss_pred cchhccCCcc
Q 016539 2 ESELKDLNSK 11 (387)
Q Consensus 2 ~~~~~~~~~~ 11 (387)
|||||+||..
T Consensus 59 Es~LK~m~Ka 68 (111)
T 2hjq_A 59 ESELKGMNKA 68 (111)
T ss_dssp HHHHHTCCHH
T ss_pred HHHHhhhhhh
Confidence 5666666543
No 7
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=6.73 E-value=2.3e+02 Score=16.23 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHHHH
Q 016539 343 KDDPKLYAENVRRLMAS 359 (387)
Q Consensus 343 ~~~~~~la~~vr~~ma~ 359 (387)
....+.++.++.++|++
T Consensus 16 gsaaeayakriaeamak 32 (33)
T 2i9n_A 16 GSAAEAYAKRIAEAMAK 32 (33)
T ss_dssp CCSTHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHhC
Confidence 34577899999998864
No 8
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=6.53 E-value=3.7e+02 Score=18.21 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEEEEcCccCCCCCCCCCHHHHHHHHHHHHHHhhCcccccc
Q 016539 328 IEVTSLPVYHPSQQEKDDPKLYAENVRRLMASERNLILSDI 368 (387)
Q Consensus 328 v~V~~lppi~~~~~~~~~~~~la~~vr~~ma~~l~~~~~~~ 368 (387)
|+|.+.+.. +.+..+.+++.+.+.+.+.+|++..+.
T Consensus 4 I~I~~~~gr-----s~eqK~~L~~~it~~l~~~lg~p~~~v 39 (72)
T 3mb2_A 4 LRITMLEGR-----STEQKAELARALSAAAAAAFDVPLAEV 39 (72)
T ss_dssp EEEEEESCC-----CHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred EEEEEcCCC-----CHHHHHHHHHHHHHHHHHHhCCCcccE
Confidence 455555432 234567999999999999999886543
No 9
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=6.33 E-value=3.9e+02 Score=17.22 Aligned_cols=24 Identities=0% Similarity=0.019 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHhhCccccc
Q 016539 344 DDPKLYAENVRRLMASERNLILSD 367 (387)
Q Consensus 344 ~~~~~la~~vr~~ma~~l~~~~~~ 367 (387)
+..+++++.+.+.+++.+|++...
T Consensus 15 eqk~~l~~~lt~~l~~~lg~~~~~ 38 (64)
T 3abf_A 15 EKKRELVRRLTEMASRLLGEPYEE 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 456789999999999999887544
No 10
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=6.17 E-value=2.6e+02 Score=18.05 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHhhCcccccc
Q 016539 344 DDPKLYAENVRRLMASERNLILSDI 368 (387)
Q Consensus 344 ~~~~~la~~vr~~ma~~l~~~~~~~ 368 (387)
+..+.+++.+.+.+.+.++++..+.
T Consensus 14 e~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 14 EQKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4567899999999999999886543
Done!