Your job contains 1 sequence.
>016540
MSYSRRSRYSRSPSPYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKREL
EKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA
RRRRGRTPTPGRYLGLRTIRVCRRSPSNSPPRRSPSYSPYRWSRSRSPSYSSERSRDRSY
SPDYRRRRPYSPNYSRRRSYSSYYSRRRSYSRSRSPYSRSPDDRGYRRCDRSYSPYDSRY
DDRYHRRRDRSYSPYDSKYDDCYYRRRDRSYSPSESSDGRYYGRHRYRSFPEVLHRHEGE
ALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVFPVGGHPSGVTLEGATLGAQVQVL
DLSQDLLALGLLHRNHHKMNLTVLCSL
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016540
(387 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025092 - symbol:SR45a "serine/arginine rich-l... 358 8.5e-33 1
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer... 200 5.0e-16 1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding... 190 7.8e-15 1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 170 1.4e-12 1
MGI|MGI:2146808 - symbol:Safb2 "scaffold attachment facto... 163 2.7e-12 2
TAIR|locus:2179939 - symbol:AtRZ-1c "AtRZ-1c" species:370... 147 4.3e-12 2
UNIPROTKB|F1SBU9 - symbol:SAFB2 "Uncharacterized protein"... 161 1.0e-11 2
UNIPROTKB|Q14151 - symbol:SAFB2 "Scaffold attachment fact... 160 1.3e-11 2
ZFIN|ZDB-GENE-030131-698 - symbol:safb "scaffold attachme... 166 3.8e-11 1
UNIPROTKB|F1PPN1 - symbol:SAFB2 "Uncharacterized protein"... 162 1.1e-10 1
UNIPROTKB|J9JHN8 - symbol:SAFB2 "Uncharacterized protein"... 162 1.1e-10 1
UNIPROTKB|E1BDE7 - symbol:SAFB2 "Uncharacterized protein"... 161 1.4e-10 1
UNIPROTKB|H9KZ12 - symbol:H9KZ12 "Uncharacterized protein... 160 1.6e-10 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 147 2.0e-10 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 147 2.0e-10 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 144 4.1e-10 1
UNIPROTKB|F5GZU3 - symbol:SAFB "Scaffold attachment facto... 155 4.5e-10 1
UNIPROTKB|B7Z2F6 - symbol:SAFB "cDNA FLJ54744, highly sim... 155 4.6e-10 1
UNIPROTKB|H9L022 - symbol:SAFB2 "Uncharacterized protein"... 155 4.6e-10 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 143 5.2e-10 1
UNIPROTKB|E1B9I2 - symbol:SAFB "Uncharacterized protein" ... 155 5.7e-10 1
UNIPROTKB|Q15424 - symbol:SAFB "Scaffold attachment facto... 155 5.9e-10 1
UNIPROTKB|B7ZLP6 - symbol:SAFB "SAFB protein" species:960... 155 5.9e-10 1
UNIPROTKB|A0AV56 - symbol:SAFB "SAFB protein" species:960... 155 5.9e-10 1
UNIPROTKB|F1S7J6 - symbol:SAFB "Uncharacterized protein" ... 155 5.9e-10 1
RGD|620613 - symbol:Safb "scaffold attachment factor B" s... 155 6.0e-10 1
MGI|MGI:2146974 - symbol:Safb "scaffold attachment factor... 155 6.0e-10 1
UNIPROTKB|F1P8M3 - symbol:F1P8M3 "Uncharacterized protein... 142 6.6e-10 1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 6.6e-10 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 142 6.6e-10 1
UNIPROTKB|E2QYH6 - symbol:SAFB "Uncharacterized protein" ... 155 7.0e-10 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 7.5e-10 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 147 7.6e-10 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 140 1.1e-09 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 142 1.5e-09 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 140 1.6e-09 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 144 1.6e-09 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 143 2.0e-09 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 146 2.1e-09 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.2e-09 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.2e-09 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.3e-09 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.5e-09 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.5e-09 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 142 2.5e-09 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.5e-09 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 142 2.5e-09 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 142 2.5e-09 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 142 2.5e-09 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 2.7e-09 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 136 2.9e-09 1
UNIPROTKB|G3X6B1 - symbol:LOC787645 "Uncharacterized prot... 147 2.9e-09 1
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein... 139 3.0e-09 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 142 3.6e-09 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 142 3.6e-09 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 142 3.6e-09 1
UNIPROTKB|J3KQA8 - symbol:HNRNPA1 "Heterogeneous nuclear ... 135 3.6e-09 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 142 3.8e-09 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 139 4.1e-09 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 137 4.5e-09 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 134 4.7e-09 1
FB|FBgn0039229 - symbol:Saf-B "Scaffold attachment factor... 146 5.8e-09 1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 138 6.9e-09 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 138 6.9e-09 1
TAIR|locus:2036520 - symbol:AtRZ-1b "AtRZ-1b" species:370... 137 7.1e-09 1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 132 7.6e-09 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 143 8.2e-09 1
UNIPROTKB|F1NCI5 - symbol:HNRNPA0 "Uncharacterized protei... 137 9.5e-09 1
UNIPROTKB|D6RBQ9 - symbol:HNRNPD "Heterogeneous nuclear r... 131 9.7e-09 1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 134 9.8e-09 1
UNIPROTKB|F1PD64 - symbol:F1PD64 "Uncharacterized protein... 134 1.0e-08 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 130 1.2e-08 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 130 1.2e-08 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 130 1.2e-08 1
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 135 1.4e-08 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 134 1.5e-08 1
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 129 1.6e-08 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 129 1.6e-08 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 134 1.8e-08 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 128 2.0e-08 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 128 2.0e-08 1
UNIPROTKB|F1M5L3 - symbol:F1M5L3 "Uncharacterized protein... 134 2.5e-08 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 127 2.6e-08 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 127 2.6e-08 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 127 2.6e-08 1
UNIPROTKB|F1M117 - symbol:F1M117 "Uncharacterized protein... 134 2.6e-08 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 134 2.8e-08 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 126 3.3e-08 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 125 4.2e-08 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 125 4.2e-08 1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein... 133 6.7e-08 1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot... 133 6.9e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 8.7e-08 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 8.7e-08 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 8.9e-08 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 121 1.1e-07 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 132 1.2e-07 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 129 1.3e-07 1
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 129 1.7e-07 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 131 1.8e-07 1
WARNING: Descriptions of 492 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 68/103 (66%), Positives = 82/103 (79%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
DAENPGN+LYVTGLS R+T+R+LE HFA EGKV DVHLV+DPWTRESRGFGF++M +V +
Sbjct: 69 DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 128
Query: 98 ADRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLGLRTIR 140
A+RCI+ LD SVL+GR+ITVE+A YLGLRT R
Sbjct: 129 ANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTAR 171
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 200 (75.5 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A N G+NL+VTG+ PR+T+ ++ + F G V ++VDP T+ESRGFGFV M T E+A
Sbjct: 62 AVNTGSNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQA 121
Query: 99 DRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLG 135
D + L V+EGR +++E+A Y G
Sbjct: 122 DAAKEGLQGEVIEGRTLSIEKARRSRPRTPTPGKYFG 158
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 190 (71.9 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 39/96 (40%), Positives = 60/96 (62%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
+N GN L+V+ L+PR + +L FA+ GKVID +++DP T+ESRGFGFVT ++ +EA
Sbjct: 67 QNNGNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQ 126
Query: 100 RCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLG 135
I+ LD + ++G I VE++ Y+G
Sbjct: 127 DAIQRLDSTKIDGNTIRVEKSKRSKARDPTPGFYMG 162
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 170 (64.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 35/97 (36%), Positives = 59/97 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
+EN GN+L+V+G++ R+ + EL++ F+ G V V ++ +P T+ SRGFGF++ +TVEEA
Sbjct: 96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEA 155
Query: 99 DRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLG 135
I L+ GR++ V++A Y+G
Sbjct: 156 TSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
>MGI|MGI:2146808 [details] [associations]
symbol:Safb2 "scaffold attachment factor B2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
MGI:MGI:2146808 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
eggNOG:NOG248048 HOGENOM:HOG000092533 HOVERGEN:HBG078408
OrthoDB:EOG4F4S9X CTD:9667 OMA:GTEDNGL ChiTaRS:SAFB2 EMBL:BC050855
EMBL:BC028827 IPI:IPI00857736 RefSeq:NP_001025150.2
UniGene:Mm.214973 UniGene:Mm.482517 ProteinModelPortal:Q80YR5
SMR:Q80YR5 PhosphoSite:Q80YR5 PaxDb:Q80YR5 PRIDE:Q80YR5
Ensembl:ENSMUST00000075510 GeneID:224902 KEGG:mmu:224902
UCSC:uc008dcg.1 NextBio:377444 Bgee:Q80YR5 CleanEx:MM_SAFB2
Genevestigator:Q80YR5 GermOnline:ENSMUSG00000042625 Uniprot:Q80YR5
Length = 991
Score = 163 (62.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G NL+V+GLS +L+ F+ GKVI +V + + +R +GFVTM+T +EA +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509
Query: 103 KYLDRSVLEGRIITVERA 120
+L R+ L GR+I+VE+A
Sbjct: 510 SHLHRTELHGRMISVEKA 527
Score = 40 (19.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 286 RYRSFPEVLHR-HEGEALG-GAI--HVVLAPNGGLTQ-EARGGATLRVYP 330
RYR FP HR H+ + G HV+ +G T+ E R G + YP
Sbjct: 796 RYRDFPRPDHRFHDFDHRDRGHYQEHVIDRRDGSRTRVEERDG---QYYP 842
Score = 35 (17.4 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 297 HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYP 330
H G + G + GG+ + +GG +P
Sbjct: 950 HGGHSQGYIVPSGRLEGGGMASQDQGGRVPNPHP 983
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 147 (56.8 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A G+ ++V GLSP +T R+LE+ F+ G ++D ++++ T SRGFGF+T A
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
D I+ + R+I+V RA
Sbjct: 62 DESIREMHGRDFGDRVISVNRA 83
Score = 38 (18.4 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 321 RGGATLRVYPQ-GLGRVFPVGGHPSGVTLEGATLG 354
R G R P G GR PVGG S + G + G
Sbjct: 133 RVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDG 167
>UNIPROTKB|F1SBU9 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:CU928983
Ensembl:ENSSSCT00000014770 Uniprot:F1SBU9
Length = 953
Score = 161 (61.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
+ + G NL+V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T +EA
Sbjct: 399 SSSSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEA 458
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+CI +L R+ L GR+I+VE+A
Sbjct: 459 TKCISHLHRTELHGRMISVEKA 480
Score = 36 (17.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 297 HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYP 330
H G + G + GGL + RG +P
Sbjct: 908 HSGHSQGHMVPAGGLDGGGLAGQDRGSRVPHPHP 941
>UNIPROTKB|Q14151 [details] [associations]
symbol:SAFB2 "Scaffold attachment factor B2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.720.30
EMBL:AC004611 eggNOG:NOG248048 HOGENOM:HOG000092533
HOVERGEN:HBG078408 OrthoDB:EOG4F4S9X EMBL:D50928 EMBL:BC025279
IPI:IPI00005648 RefSeq:NP_055464.1 UniGene:Hs.655392
ProteinModelPortal:Q14151 SMR:Q14151 IntAct:Q14151
MINT:MINT-5006081 STRING:Q14151 PhosphoSite:Q14151 DMDM:38372432
PaxDb:Q14151 PeptideAtlas:Q14151 PRIDE:Q14151
Ensembl:ENST00000252542 GeneID:9667 KEGG:hsa:9667 UCSC:uc002mcd.3
CTD:9667 GeneCards:GC19M005587 HGNC:HGNC:21605 HPA:HPA050894
MIM:608066 neXtProt:NX_Q14151 PharmGKB:PA134987683
InParanoid:Q14151 OMA:GTEDNGL PhylomeDB:Q14151 ChiTaRS:SAFB2
GenomeRNAi:9667 NextBio:36299 ArrayExpress:Q14151 Bgee:Q14151
CleanEx:HS_SAFB2 Genevestigator:Q14151 GermOnline:ENSG00000130254
Uniprot:Q14151
Length = 953
Score = 160 (61.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G NL+V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T +EA +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465
Query: 103 KYLDRSVLEGRIITVERA 120
+L R+ L GR+I+VE+A
Sbjct: 466 SHLHRTELHGRMISVEKA 483
Score = 36 (17.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 312 PNGGLTQEARGGATLRVYPQGLGRVFPVGGHPSGVTLEGATL 353
P+G +RGG G G F GGH G + G L
Sbjct: 888 PSGPGHMASRGGVA------GRGG-FAQGGHSQGHVVPGGGL 922
>ZFIN|ZDB-GENE-030131-698 [details] [associations]
symbol:safb "scaffold attachment factor B"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
SMART:SM00513 ZFIN:ZDB-GENE-030131-698 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:BX323550 EMBL:BX901933
IPI:IPI00993560 Ensembl:ENSDART00000129766 ArrayExpress:F1QVW3
Bgee:F1QVW3 Uniprot:F1QVW3
Length = 888
Score = 166 (63.5 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G NL+V+GLS +L+ F+ GKV+ +V + + +R +GFVTM ++EEA +CI
Sbjct: 417 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMCSIEEATKCI 476
Query: 103 KYLDRSVLEGRIITVERA 120
+L R+ L GR+I+VERA
Sbjct: 477 SHLHRTELHGRMISVERA 494
>UNIPROTKB|F1PPN1 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AAEX03012513
Ensembl:ENSCAFT00000029866 Uniprot:F1PPN1
Length = 953
Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
N G NL+V+GLS +L+ F GKV+ +V + + +R +GFVTM+T +EA +
Sbjct: 404 NSGRNLWVSGLSSTTRATDLKNLFNKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATK 463
Query: 101 CIKYLDRSVLEGRIITVERA 120
CI +L R+ L GR+I+VE+A
Sbjct: 464 CISHLHRTELHGRMISVEKA 483
>UNIPROTKB|J9JHN8 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:AAEX03012513
Ensembl:ENSCAFT00000045160 Uniprot:J9JHN8
Length = 954
Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
N G NL+V+GLS +L+ F GKV+ +V + + +R +GFVTM+T +EA +
Sbjct: 405 NSGRNLWVSGLSSTTRATDLKNLFNKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATK 464
Query: 101 CIKYLDRSVLEGRIITVERA 120
CI +L R+ L GR+I+VE+A
Sbjct: 465 CISHLHRTELHGRMISVEKA 484
>UNIPROTKB|E1BDE7 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:DAAA02019580
IPI:IPI00837910 Ensembl:ENSBTAT00000044703 Uniprot:E1BDE7
Length = 954
Score = 161 (61.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
+ + G NL+V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T +EA
Sbjct: 401 SNSSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEA 460
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+CI +L R+ L GR+I+VE+A
Sbjct: 461 TKCISHLHRTELHGRMISVEKA 482
>UNIPROTKB|H9KZ12 [details] [associations]
symbol:H9KZ12 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AADN02043355 EMBL:AADN02043356
Ensembl:ENSGALT00000003015 OMA:HERDERQ Uniprot:H9KZ12
Length = 873
Score = 160 (61.4 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G NL+V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 404 GRNLWVSGLSSSTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSEEATKCI 463
Query: 103 KYLDRSVLEGRIITVERA 120
+L R+ L G++I+VE+A
Sbjct: 464 NHLHRTELHGKMISVEKA 481
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
LYV +S T+ +L + F+ G V VH++ DP T S+G G+V M T EEA I+ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 106 DRSVLEGRIITVERA 120
D ++L R+ITV A
Sbjct: 65 DGALLRNRVITVSVA 79
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
LYV +S T+ +L + F+ G V VH++ DP T S+G G+V M T EEA I+ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 106 DRSVLEGRIITVERA 120
D ++L R+ITV A
Sbjct: 65 DGALLRNRVITVSVA 79
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS + T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 9 LFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 69 PHKV-DGRVVEPKRA 82
>UNIPROTKB|F5GZU3 [details] [associations]
symbol:SAFB "Scaffold attachment factor B1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 HGNC:HGNC:10520
ChiTaRS:SAFB IPI:IPI00983392 ProteinModelPortal:F5GZU3 SMR:F5GZU3
Ensembl:ENST00000433404 UCSC:uc010xiu.2 ArrayExpress:F5GZU3
Bgee:F5GZU3 Uniprot:F5GZU3
Length = 747
Score = 155 (59.6 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 235 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 294
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 295 NHLHKTELHGKMISVEKA 312
>UNIPROTKB|B7Z2F6 [details] [associations]
symbol:SAFB "cDNA FLJ54744, highly similar to Scaffold
attachment factor B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011499
EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802 HGNC:HGNC:10520
HOVERGEN:HBG078408 ChiTaRS:SAFB EMBL:AK294671 IPI:IPI01018318
SMR:B7Z2F6 STRING:B7Z2F6 Ensembl:ENST00000538656 UCSC:uc010xit.2
Uniprot:B7Z2F6
Length = 759
Score = 155 (59.6 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 248 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 307
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 308 NHLHKTELHGKMISVEKA 325
>UNIPROTKB|H9L022 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:DKADRKD EMBL:AADN02043356
Ensembl:ENSGALT00000021807 Uniprot:H9L022
Length = 762
Score = 155 (59.6 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A G N +V+GL+ +L+ F+ GKV+ +V + + +R +GFVTM+T EEA
Sbjct: 399 AGGSGRNFWVSGLASTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEA 458
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+CI +L ++ L G+II+VE+A
Sbjct: 459 TKCITHLHKTELHGKIISVEKA 480
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P NL+V+GLS R T L FA G+V D +V D + S+GFGFV AT+E++ +
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 102 IKYLDRSVLEGRIITVERA 120
I +D L+G +I E A
Sbjct: 114 IAGMDGKFLDGWVIFAEYA 132
>UNIPROTKB|E1B9I2 [details] [associations]
symbol:SAFB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
EMBL:DAAA02019576 GeneTree:ENSGT00690000102108 OMA:DKADRKD
EMBL:DAAA02019577 EMBL:DAAA02019578 EMBL:DAAA02019579
IPI:IPI01000416 Ensembl:ENSBTAT00000002344 Uniprot:E1B9I2
Length = 902
Score = 155 (59.6 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 404 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 463
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 464 NHLHKTELHGKMISVEKA 481
>UNIPROTKB|Q15424 [details] [associations]
symbol:SAFB "Scaffold attachment factor B1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001047 "core promoter binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0040007 "growth" evidence=IEA] [GO:0042445
"hormone metabolic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0006325
"chromatin organization" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
SMART:SM00513 GO:GO:0005634 GO:GO:0040007 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0003690 GO:GO:0001047
GO:GO:0042445 GO:GO:0030520 GO:GO:0006325 EMBL:AC011499 EMBL:U72355
EMBL:AK298707 EMBL:AC004611 EMBL:AC134303 EMBL:AB208780 EMBL:L43631
IPI:IPI00300631 IPI:IPI00941773 PIR:S64732 RefSeq:NP_002958.2
UniGene:Hs.728802 ProteinModelPortal:Q15424 SMR:Q15424
IntAct:Q15424 MINT:MINT-1033560 STRING:Q15424 PhosphoSite:Q15424
DMDM:116242782 PaxDb:Q15424 PRIDE:Q15424 Ensembl:ENST00000292123
Ensembl:ENST00000454510 GeneID:6294 KEGG:hsa:6294 UCSC:uc002mcf.3
CTD:6294 GeneCards:GC19P005574 H-InvDB:HIX0014682 HGNC:HGNC:10520
HPA:CAB001969 HPA:HPA016832 HPA:HPA020076 MIM:602895
neXtProt:NX_Q15424 PharmGKB:PA34928 eggNOG:NOG248048
HOGENOM:HOG000092533 HOVERGEN:HBG078408 InParanoid:Q15424
OMA:DKADRKD PhylomeDB:Q15424 ChiTaRS:SAFB GenomeRNAi:6294
NextBio:24435 ArrayExpress:Q15424 Bgee:Q15424 CleanEx:HS_SAFB
Genevestigator:Q15424 GermOnline:ENSG00000160633 Uniprot:Q15424
Length = 915
Score = 155 (59.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 465 NHLHKTELHGKMISVEKA 482
>UNIPROTKB|B7ZLP6 [details] [associations]
symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC011499 EMBL:AC004611
EMBL:AC134303 UniGene:Hs.728802 GeneID:6294 KEGG:hsa:6294 CTD:6294
HGNC:HGNC:10520 HOVERGEN:HBG078408 ChiTaRS:SAFB GenomeRNAi:6294
NextBio:24435 EMBL:BC143939 IPI:IPI00646058 RefSeq:NP_001188268.1
ProteinModelPortal:B7ZLP6 STRING:B7ZLP6 PRIDE:B7ZLP6
Ensembl:ENST00000592224 UCSC:uc002mce.4 Bgee:B7ZLP6 Uniprot:B7ZLP6
Length = 916
Score = 155 (59.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 465 NHLHKTELHGKMISVEKA 482
>UNIPROTKB|A0AV56 [details] [associations]
symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802
GeneID:6294 KEGG:hsa:6294 CTD:6294 HGNC:HGNC:10520
HOGENOM:HOG000092533 HOVERGEN:HBG078408 ChiTaRS:SAFB
GenomeRNAi:6294 NextBio:24435 OrthoDB:EOG4F4S9X EMBL:BC126219
EMBL:BC143937 IPI:IPI00983392 RefSeq:NP_001188267.1
ProteinModelPortal:A0AV56 SMR:A0AV56 STRING:A0AV56 PRIDE:A0AV56
Ensembl:ENST00000588852 UCSC:uc002mcg.3 ArrayExpress:A0AV56
Bgee:A0AV56 Uniprot:A0AV56
Length = 917
Score = 155 (59.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 465 NHLHKTELHGKMISVEKA 482
>UNIPROTKB|F1S7J6 [details] [associations]
symbol:SAFB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042445 "hormone
metabolic process" evidence=IEA] [GO:0040007 "growth" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0005634 GO:GO:0040007
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
Gene3D:1.10.720.30 GO:GO:0001047 GO:GO:0042445 GO:GO:0030520
GeneTree:ENSGT00690000102108 OMA:DKADRKD EMBL:CU928983
EMBL:FP089464 Ensembl:ENSSSCT00000014769 Uniprot:F1S7J6
Length = 920
Score = 155 (59.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 407 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 466
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 467 NHLHKTELHGKMISVEKA 484
>RGD|620613 [details] [associations]
symbol:Safb "scaffold attachment factor B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0040007 "growth" evidence=ISO] [GO:0042445 "hormone metabolic
process" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0050684
"regulation of mRNA processing" evidence=IDA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 RGD:620613 GO:GO:0005634 GO:GO:0000166
GO:GO:0043565 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0006351
GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0050684 CTD:6294
HOVERGEN:HBG078408 EMBL:AF056324 IPI:IPI00209618 RefSeq:NP_071789.1
UniGene:Rn.88640 ProteinModelPortal:O88453 IntAct:O88453
PhosphoSite:O88453 PRIDE:O88453 GeneID:64196 KEGG:rno:64196
NextBio:612872 Genevestigator:O88453 Uniprot:O88453
Length = 931
Score = 155 (59.6 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 487 NHLHKTELHGKMISVEKA 504
>MGI|MGI:2146974 [details] [associations]
symbol:Safb "scaffold attachment factor B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042445 "hormone metabolic process" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0050684 "regulation of mRNA processing"
evidence=ISO] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 MGI:MGI:2146974 GO:GO:0005634
GO:GO:0040007 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0006351 GO:GO:0003682 GO:GO:0003723 Gene3D:1.10.720.30
GO:GO:0001047 GO:GO:0042445 GO:GO:0030520 EMBL:CH466537
EMBL:CT485788 GeneTree:ENSGT00690000102108 CTD:6294
HOGENOM:HOG000092533 OMA:DKADRKD ChiTaRS:SAFB EMBL:BC018200
EMBL:AK087504 IPI:IPI00944159 RefSeq:NP_001156772.1
UniGene:Mm.255066 ProteinModelPortal:D3YXK2 SMR:D3YXK2
IntAct:D3YXK2 PRIDE:D3YXK2 Ensembl:ENSMUST00000095224 GeneID:224903
KEGG:mmu:224903 UCSC:uc008dck.2 OrthoDB:EOG4F4S9X NextBio:377448
Bgee:D3YXK2 Uniprot:D3YXK2
Length = 937
Score = 155 (59.6 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 487 SHLHKTELHGKMISVEKA 504
>UNIPROTKB|F1P8M3 [details] [associations]
symbol:F1P8M3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015267
Ensembl:ENSCAFT00000039191 Uniprot:F1P8M3
Length = 210
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N +++GLS + T L HF G +ID + DP T+ SRGFGFV AT+EE D +K
Sbjct: 15 NFFISGLSFKTTYETLRSHFEQWGMLIDCVAMRDPNTKLSRGFGFVMYATMEEVDAAMKA 74
Query: 105 LDRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 75 RPHKV-DGRVVERKRA 89
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 12 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 71
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 72 PHKV-DGRVVEPKRA 85
>UNIPROTKB|E2QYH6 [details] [associations]
symbol:SAFB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AAEX03012513
Ensembl:ENSCAFT00000029855 OMA:WELEERE Uniprot:E2QYH6
Length = 1054
Score = 155 (59.6 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 543 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 602
Query: 103 KYLDRSVLEGRIITVERA 120
+L ++ L G++I+VE+A
Sbjct: 603 NHLHKTELHGKMISVEKA 620
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 142 (55.0 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 35 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 94
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 95 PHKV-DGRVVEPKRA 108
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 147 (56.8 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A LYV L IT EL + F G V+DV +V D T SRGFGFVTM ++EEA
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 99 DRCIKYLDRSVLEGRIITV 117
++ + S + GR + V
Sbjct: 171 KEAMQMFNSSQIGGRTVKV 189
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V+GLS T +L+ FA+ G+++D ++ D + S+GFGFVT AT+E+A++ +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 106 DRSVLEGRIITVERA 120
+ L+G +I V+ A
Sbjct: 96 NAKFLDGWVIFVDPA 110
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 142 (55.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 140 (54.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/75 (42%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 106 DRSVLEGRIITVERA 120
V GR++ +RA
Sbjct: 69 PHKV-NGRVVEPKRA 82
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P +YV L + LE+ F+ GKV++ +V D T SRGFGFVTM+ V+E +
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 102 IKYLDRSVLEGRIITVERA 120
I LD LEGR I V A
Sbjct: 302 ISALDGQNLEGRAIRVNVA 320
Score = 123 (48.4 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V L+ + + L F G V ++ + T +SRGFGFVTM++V+EA+ ++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 106 DRSVLEGRIITVERA 120
+R L GR++TV +A
Sbjct: 212 NRYDLNGRLLTVNKA 226
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 146 (56.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
D E G ++V G+ P +T+ E + F+ GK+ID L++D T SRGFGFVT +
Sbjct: 241 DQEKVGK-IFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAA 299
Query: 98 ADR-CI-KYLDRSVLEGRIITVERA 120
D+ C+ KYL L+G+ + V+RA
Sbjct: 300 VDKVCVNKYL---TLKGKAMEVKRA 321
Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A P ++ GLS T+ L HF G ++D ++ D T SRGFGF+T +
Sbjct: 157 AGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSV 216
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
D +K DR VL+G++I +RA
Sbjct: 217 DALLK--DRHVLDGKLIDPKRA 236
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 142 (55.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G+ LYV L+ R+ +LE+ FAA G V +V+D T SRGFGFV M + +EA I
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 103 KYLDRSVLEGRIITVERA 120
L+ ++GR + V A
Sbjct: 62 AGLNGKEMDGRNLMVNEA 79
>UNIPROTKB|G3X6B1 [details] [associations]
symbol:LOC787645 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102108 EMBL:DAAA02019579 EMBL:DAAA02019580
Ensembl:ENSBTAT00000002342 Uniprot:G3X6B1
Length = 699
Score = 147 (56.8 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+TVEEA +CI
Sbjct: 346 GRYFWVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCI 405
Query: 103 KYLDRSVLEGRIITVER 119
+L ++ L G++I+VE+
Sbjct: 406 NHLHKTELHGKMISVEK 422
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 139 (54.0 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ T L HF G + + ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ ERA
Sbjct: 76 PHKV-DGRVVEPERA 89
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRII 115
V +GR++
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 142 (55.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
GN +YV LS + LE F+ +GKV++ ++ D + S+GFGFVT + +E I
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 103 KYLDRSVLEGRIITVERA 120
K LD + L+GR I V A
Sbjct: 263 KSLDGADLDGRQIRVSEA 280
Score = 105 (42.0 bits), Expect = 0.00097, P = 0.00096
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V L + +L + F + G V V ++ D T SRGFGFVTM++V E + +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 106 DRSVLEGRIITV 117
+ L+GR + V
Sbjct: 153 NGYELDGRPLRV 164
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 137 (53.3 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+YV L+ +TK LE F+ +GKV+ + P T +S GFGFVT ++ E+ + I L
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 106 DRSVLEGRIITVERA 120
+ S+LEG+ I V +A
Sbjct: 239 NNSLLEGQKIRVNKA 253
Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+Y+ + +T +L K G V V ++ D ++ SR FGF TM +VE+A+ ++ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 106 DRSVLEGRIITV 117
+ + +EGR I V
Sbjct: 138 NGNTVEGREIKV 149
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ +R LE HF++ G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>FB|FBgn0039229 [details] [associations]
symbol:Saf-B "Scaffold attachment factor B" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0005654 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.10.720.30 GO:GO:0016363
GO:GO:0000381 FlyBase:FBgn0039229 EMBL:BT001582
ProteinModelPortal:Q8IGV1 STRING:Q8IGV1 PRIDE:Q8IGV1
InParanoid:Q8IGV1 ArrayExpress:Q8IGV1 Bgee:Q8IGV1 Uniprot:Q8IGV1
Length = 977
Score = 146 (56.5 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
NL+V+GLS +L+ F+ GKVI +V + T +R +G+VTM++ +A RCI+
Sbjct: 362 NLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSSSADASRCIEN 421
Query: 105 LDRSVLEGRIITVER 119
L R+ L GRII+VER
Sbjct: 422 LHRTELHGRIISVER 436
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 138 (53.6 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D +V+DP T+ SRGFGFVT TVEE D +
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAMNAR 83
Query: 106 DRSVLEGRIITVERA 120
+ ++GR++ +RA
Sbjct: 84 PQK-MDGRVVEPKRA 97
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 138 (53.6 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVE+ D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 137 (53.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 38 DAENPGN---NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT 94
D EN GN ++V GLS +T+R+LE F GK+ + ++V T RGFGF+T
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62
Query: 95 VEEADRCIKYLDRSVLEGRIITVERA 120
AD IK++ L ++I+V +A
Sbjct: 63 RRGADDAIKHMHGRELGNKVISVNKA 88
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
+ ++V GLSP L++ F + GK++D +V+D + SRGFGFVT ++E A+ ++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 104 YLDRSVLEGRIITVERA 120
+ L+GRII V A
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 143 (55.4 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A P L++ L T L +HF+ + +VVDP T++S+G+GFVT A VE+A
Sbjct: 32 ATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDA 91
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
++ L+ S EG+ I VE A
Sbjct: 92 KAALEELNGSTFEGKKIKVEYA 113
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 137 (53.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + T+ L +HFAA G + D +V++P T+ SR FGFVT + VEEAD +
Sbjct: 30 LFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAAS 89
Query: 106 DRSVLEGRIITVERA 120
+V +G + ++RA
Sbjct: 90 PHAV-DGNSVELKRA 103
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
E+ G +++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D
Sbjct: 75 EDEGK-MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
Query: 100 RCIKYLDRSVLEGRIITVERA 120
+ + + L G++I +RA
Sbjct: 134 KVMDQKEHK-LNGKVIDPKRA 153
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 134 (52.2 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ RGFGFVT TVEE D +
Sbjct: 9 LFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNAR 68
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 69 PHKV-DGRVVEPKRA 82
>UNIPROTKB|F1PD64 [details] [associations]
symbol:F1PD64 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03002771
Ensembl:ENSCAFT00000021102 Uniprot:F1PD64
Length = 256
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/75 (41%), Positives = 41/75 (54%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D + DP T+ SRG GFVT ATVEE D +
Sbjct: 16 LFIRGLSFETTNESLRSHFEQWGTLTDWVAMRDPNTKHSRGLGFVTYATVEEVDAAMNTR 75
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 76 PHKV-DGRVVEPKRA 89
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ ++ LE HF++ G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
+ P LYV+GLS R T+ L F G +I +++V+D +GF F+ T EEA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ I+ + L+GR+I VE A
Sbjct: 132 MKAIQGMHGKFLDGRVIFVEEA 153
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+YV LSP T L + F+ G V+D ++ D +T SRGFGFVT ++ EA+ + +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 106 DRSVLEGRIITVE 118
D L GR ++V+
Sbjct: 65 DGKELNGRRVSVK 77
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 135 (52.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ LS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERA 120
+ V GR++ +RA
Sbjct: 76 PQKV-NGRVVEPKRA 89
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 134 (52.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 70
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 71 PHKV-DGRVVEPKRA 84
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 61 EHK-LNGKVIDPKRA 74
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 134 (52.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 23 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 82
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 83 PHKV-DGRVVEPKRA 96
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ ++ LE HF++ G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ ++ LE HF++ G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 98 PHKV-DGRVVEPKRA 111
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ ++ LE HF++ G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ ++ LE HF++ G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V+ LS T + L + F+ G++ + L+ D T+ +GFGF+T + ++A + +K L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 106 DRSVLEGRIITVERA 120
D +++GR+I VE A
Sbjct: 69 DGKIVDGRLIFVEVA 83
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 98 PHKV-DGRVVEPKRA 111
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 35 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 94
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 95 PHKV-DGRVVEPKRA 108
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPW-TRESRGFGFVTMATVEEADRCIKY 104
L+V GL+ ++ LE HF++ G + +V +VV W TR S+GFGF+T E A ++
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEV-VVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 105 LDRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 67 TNGESLDGRQIHVDHA 82
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ ++ LE HF + G + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
+ L++ GLS T++ L + F+ G+V++ +V+D + S+GFGFVT A+ +EA + +
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 104 YLDRSVLEGRIITVERA 120
+ L GR I V+ A
Sbjct: 94 EFNGQQLNGRTIFVDYA 110
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 133 (51.9 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+V++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + L+ L+G+ I VE+A
Sbjct: 62 AKDAARELNGKALDGKPIKVEQA 84
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 133 (51.9 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+V++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + L+ L+G+ I VE+A
Sbjct: 62 AKDAARELNGKALDGKPIKVEQA 84
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 122 (48.0 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ T+ LE+ F+ G+V +V +V D ++ SRGFGFVT E+A + +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 38 DAENPGN--NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATV 95
D++ P L++ GLS T+ L HF GK+ D ++ DP + SRGFGFVT ++V
Sbjct: 5 DSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSV 64
Query: 96 EEADRCIKYLDRSVLEGRIITVERA 120
E D + V +GR++ +RA
Sbjct: 65 SEVDAAMTARPHKV-DGRVVEPKRA 88
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 62
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 63 EHK-LNGKVIDPKRA 76
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 159 EHK-LNGKVIDPKRA 172
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 131 (51.2 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
E+ G +++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D
Sbjct: 42 EDEGK-MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 100 RCIKYLDRSVLEGRIITVERA 120
+ + + L G++I +RA
Sbjct: 101 KVMDQKEHK-LNGKVIDPKRA 120
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 129 (50.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L + GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 10 LLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCAR 69
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 70 PHKV-DGRVVEPKRA 83
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 131 (51.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 131 (51.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 75 PHKV-DGRVVEPKRA 88
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 131 (51.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G ++V GLS +K++L+ +FA G+V D + +DP T SRGFGF+ E D+ +
Sbjct: 63 GVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVL 122
Query: 103 KYLDRSVLEGRIITVERA 120
++ + L+GR+I ++A
Sbjct: 123 EHKEHR-LDGRLIDPKKA 139
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 119 (46.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P +L+V ++ +L + F G ++DV++ +D +TR RGF +V V +A+
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 102 IKYLDRSVLEGRIITVERA 120
+ LDR + GR I ++ A
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVER 119
+ ++ ++GR I V++
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQ 81
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ K+ LE H ++ + +V +V D T+ SRGFGF+T E A ++ +
Sbjct: 8 LFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGESLDGRQIHVDHA 82
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 47 YVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD 106
+V GL + L+ F+ G VID ++ D T SRGFGFVT A+ E + I+ ++
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 107 RSVLEGRIITVERA 120
L+GR ITV A
Sbjct: 69 GQDLDGRNITVNEA 82
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 131 (51.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
+ L++ GL R T++ L ++ GK+ D ++ DP + SRGFGFVT ++V E D +
Sbjct: 21 HKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMA 80
Query: 104 YLDRSVLEGRIITVERA 120
SV +G+++ +RA
Sbjct: 81 ARPHSV-DGKVVDPKRA 96
>ZFIN|ZDB-GENE-040923-2 [details] [associations]
symbol:rbfox1l "RNA binding protein, fox-1 homolog
(C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
development" evidence=IGI] [GO:0008380 "RNA splicing"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
Length = 382
Score = 123 (48.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V+ + R +L + F GK++DV ++ + R S+GFGFVT + EADR + L
Sbjct: 149 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFESAVEADRAREKL 206
Query: 106 DRSVLEGRIITVERA 120
+ +++EGR I V A
Sbjct: 207 NGTIVEGRKIEVNNA 221
Score = 44 (20.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 289 SFPEVLHRHEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVFPVGGHP 343
++P V+++ EG G ++ + Q A AT Y G GRV+ P
Sbjct: 301 AYPGVVYQ-EG-LYGAEVYGGYPATYRVAQSASAAATA-TYSDGYGRVYATATDP 352
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 131 (51.2 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 75 PHKV-DGRVVEPKRA 88
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEW-GTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 75 PHKV-DGRVVEPKRA 88
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T + HF G + D + DP T+ SRGFGFVT ATVEE D +
Sbjct: 2 LFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNAR 61
Query: 106 DRSVLEGRIITVERA 120
V + R++ RA
Sbjct: 62 PHKV-DARVVEPNRA 75
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 131 (51.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 131 (51.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 131 (51.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 131 (51.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 131 (51.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 97 PHKV-DGRVVEPKRA 110
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 130 (50.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
E+ G ++V GLS TK++L+ +F G+V+D L +DP T SRGFGFV E +
Sbjct: 51 EDEGK-MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 100 RCIKYLDRSVLEGRIITVERA 120
+ I + L G++I ++A
Sbjct: 110 KVITQKEHK-LNGKVIDPKKA 129
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 131 (51.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 129 (50.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 61 EHK-LNGKVIDPKRA 74
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 129 (50.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 62 EHK-LNGKVIDPKRA 75
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 130 (50.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS + T L H +G ++D ++ DP T+ SRGFGF T AT E+ D +
Sbjct: 16 LFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNAR 75
Query: 106 DRSVLEGRIITVERA 120
++GR++ +RA
Sbjct: 76 PHK-MDGRVVEPKRA 89
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 132 (51.5 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
D ++ ++V G+ P + +E E+ F+ G +ID L++D T +SRGFGFVT + +
Sbjct: 237 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296
Query: 98 ADR-CI-KYLDRSVLEGRIITVERA 120
DR C K++D + R I ++RA
Sbjct: 297 VDRVCQNKFID---FKDRKIEIKRA 318
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
D +++ GL+ T+ L ++F G V D+ ++ DP T SRGFGF++
Sbjct: 153 DLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSS 212
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
D +K + +L+G++I +RA
Sbjct: 213 VDEVVK--TQHILDGKVIDPKRA 233
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 129 (50.5 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 32 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 91
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 92 EHK-LNGKVIDPKRA 105
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 122 (48.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ ++ LE HF++ G + +V +V D T+ SRGF F+T E A ++ +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 106 DRSVLEGRIITVERA 120
+ L+GR I V+ A
Sbjct: 68 NGKSLDGRQIRVDHA 82
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 121 (47.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 121 (47.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 121 (47.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 129 (50.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 32/75 (42%), Positives = 40/75 (53%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+YV L + LE+ F+ GKV+D +V D T SRGFGFV M+ E + I L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 106 DRSVLEGRIITVERA 120
D LEGR I V A
Sbjct: 269 DGQNLEGRAIKVNVA 283
Score = 117 (46.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V L + + L F G V ++ + T +SRGFGFVTM+TVEEA++ ++
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 106 DRSVLEGRIITVERA 120
+ + GR +TV RA
Sbjct: 175 NSFEVNGRRLTVNRA 189
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 129 (50.5 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATV+E D +
Sbjct: 16 LFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARSHK 75
Query: 106 DRSVLEGRIITVERA 120
++GR++ +RA
Sbjct: 76 ----VDGRVVEPKRA 86
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 129 (50.5 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 64 AKDAARDMNGKSLDGKAIKVEQA 86
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 129 (50.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ T L + F+ G + + +V D T SRGFGFV A+ EAD + +
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 106 DRSVLEGRIITVERA 120
+ +GRII V++A
Sbjct: 64 NNQEFDGRIIRVDKA 78
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
+ L+V GLS L++ F + G+V + ++ D T SRGFGFV+ + + A+ IK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 104 YLDRSVLEGRIITVERA 120
+D L GR I V A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 129 (50.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 159 EHK-LNGKVIDPKRA 172
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 129 (50.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 129 (50.5 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
+ L++ G++ + + L + F G+V+D +++D T SRGFGFVT + E A I+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 104 YLDRSVLEGRIITVERA 120
LD L GR++ V A
Sbjct: 100 ALDGRDLHGRVVKVNYA 116
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 129 (50.5 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
GN +++ GLS +K++L ++ + G+V+D + DP T SRGFGFV D+ +
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 103 KYLDRSVLEGRIITVERA 120
+ L L+G++I +RA
Sbjct: 110 E-LKEHKLDGKLIDPKRA 126
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 129 (50.5 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
GN +++ GLS +K++L ++ + G+V+D + DP T SRGFGFV D+ +
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 103 KYLDRSVLEGRIITVERA 120
+ L L+G++I +RA
Sbjct: 110 E-LKEHKLDGKLIDPKRA 126
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 129 (50.5 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
E+ G +++ GLS TK++L+ +F+ G V+D L +DP T SRGFGFV E D
Sbjct: 73 EDEGK-MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 131
Query: 100 RCIKYLDRSVLEGRIITVERA 120
+ + + L G++I +RA
Sbjct: 132 KVMDQKEHK-LNGKVIDPKRA 151
>UNIPROTKB|F1S050 [details] [associations]
symbol:SLTM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108 EMBL:CU582792
Ensembl:ENSSSCT00000005073 OMA:MESKDET Uniprot:F1S050
Length = 633
Score = 131 (51.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 444
Query: 105 LDRSVLEGRIITVER 119
L RS L G++I+VE+
Sbjct: 445 LHRSELHGQLISVEK 459
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 159 EHK-LNGKVIDPKRA 172
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 159 EHK-LNGKVIDPKRA 172
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 159 EHK-LNGKVIDPKRA 172
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 159 EHK-LNGKVIDPKRA 172
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 128 (50.1 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + ++ L HF A G + D +VV+P T+ SR FGFVT + VEEAD +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 106 DRSVLEGRIITVERA 120
+V +G + ++RA
Sbjct: 69 PHAV-DGNTVELKRA 82
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 128 (50.1 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + ++ L HF A G + D +VV+P T+ SR FGFVT + VEEAD +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 106 DRSVLEGRIITVERA 120
+V +G + ++RA
Sbjct: 69 PHAV-DGNTVELKRA 82
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 129 (50.5 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL R T L+ HF G ++DV ++ DP T+ SRGFGF+T + D K
Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 92
Query: 106 DRSVLEGRIITVERA 120
+ +GR++ +RA
Sbjct: 93 PHKI-DGRVVEPKRA 106
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 128 (50.1 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + ++ L HF A G + D +VV+P T+ SR FGFVT + VEEAD +
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 73
Query: 106 DRSVLEGRIITVERA 120
+V +G + ++RA
Sbjct: 74 PHAV-DGNTVELKRA 87
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 128 (50.1 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + ++ L HF A G + D +VV+P T+ SR FGFVT + VEEAD +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 106 DRSVLEGRIITVERA 120
+V +G + ++RA
Sbjct: 69 PHAV-DGNTVELKRA 82
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 128 (50.1 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + ++ L HF A G + D +VV+P T+ SR FGFVT + VEEAD +
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 73
Query: 106 DRSVLEGRIITVERA 120
+V +G + ++RA
Sbjct: 74 PHAV-DGNTVELKRA 87
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
+L V L+ R + L + F G+V DV++ D +T+ESRGF FV +A+ +
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 105 LDRSVLEGRIITVERA 120
+D +VL+GR + V+ A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
+L V L+ R + L + F G+V DV++ D +T+ESRGF FV +A+ +
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 105 LDRSVLEGRIITVERA 120
+D +VL+GR + V+ A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
N +YV LS +T EL+ F G++ + L++D T S+GF F+T T + A +
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 104 YLDRSVLEGRIITVERA 120
+ L+GR I V A
Sbjct: 78 KANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
N +YV LS +T EL+ F G++ + L++D T S+GF F+T T + A +
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 104 YLDRSVLEGRIITVERA 120
+ L+GR I V A
Sbjct: 78 KANGIDLQGRKIRVNIA 94
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 21/75 (28%), Positives = 47/75 (62%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
+ L+V G+S T+ L + F+ G+V+ V +++D +GF +VT ++ EEA++ +
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 104 YLDRSVLEGRIITVE 118
L+ +++GR++ ++
Sbjct: 81 ELNAQLVDGRVVILD 95
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 129 (50.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 129 (50.5 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 129 (50.5 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 4 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 62
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 63 AKDAARDMNGKSLDGKAIKVEQA 85
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 122 (48.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 131 (51.2 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V L T+ EL +HF+ GK+ +VHLV+D T+ SRG ++ E A R ++ L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 106 DRSVLEGRIITV 117
D S +GR++ +
Sbjct: 356 DNSSFQGRLLHI 367
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 127 (49.8 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEW-GTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 75 PHKV-DGRVVEPKRA 88
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
N ++VT L + K L+ HF+ G + D ++V+D T+ S+GFGFV + E I
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAIN 63
Query: 104 YLDRSVLEGRIITVERA 120
D + GR + V A
Sbjct: 64 S-DNEI-NGRKLVVNEA 78
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 127 (49.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G V+D L +DP T SRGFGFV E D+ +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 157 EHK-LNGKVIDPKRA 170
>UNIPROTKB|F1M131 [details] [associations]
symbol:F1M131 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00196639
Ensembl:ENSRNOT00000018496 ArrayExpress:F1M131 Uniprot:F1M131
Length = 376
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 296 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 355
Query: 105 LDRSVLEGRIITVER 119
L R+ L G++I+VE+
Sbjct: 356 LHRTELHGQLISVEK 370
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P +L+V ++ +L + F G ++DV++ +D +TR RGF +V V +A+
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 102 IKYLDRSVLEGRIITVERA 120
+ LDR + GR I ++ A
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+++++ L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
+++V LSP IT +++ FA GK+ D +V D T +S+G+GFV+ +A+ I +
Sbjct: 59 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 118
Query: 105 LDRSVLEGRII 115
+ L GR I
Sbjct: 119 MGGQWLGGRQI 129
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 127 (49.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G V+D L +DP T SRGFGFV E D+ +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 157 EHK-LNGKVIDPKRA 170
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 127 (49.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G V+D L +DP T SRGFGFV E D+ +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 106 DRSVLEGRIITVERA 120
+ L G++I +RA
Sbjct: 157 EHK-LNGKVIDPKRA 170
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 126 (49.4 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
E+ G +++ GLS +K++L + + G+V+D + DP T SRGFGFV E D
Sbjct: 27 EDDGK-MFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVD 85
Query: 100 RCIKYLDRSVLEGRIITVERA 120
R ++ + L+G++I +RA
Sbjct: 86 RVLELTEHK-LDGKLIDPKRA 105
Score = 115 (45.5 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEAD 99
+ P ++V GLSP IT+ +L ++F G++ + L D T E RGF FVT A E
Sbjct: 111 KEPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQ 170
Query: 100 RCIK 103
+ ++
Sbjct: 171 KLLE 174
>UNIPROTKB|H7BXE3 [details] [associations]
symbol:SLTM "SAFB-like transcription modulator"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC025918 EMBL:AC090515
HGNC:HGNC:20709 ChiTaRS:SLTM Ensembl:ENST00000249736 Bgee:H7BXE3
Uniprot:H7BXE3
Length = 453
Score = 128 (50.1 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 367 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 426
Query: 105 LDRSVLEGRIITVER 119
L R+ L G++I+VE+
Sbjct: 427 LHRTELHGQLISVEK 441
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
N ++V + I K L+ HF+ G V D ++V+D T+ S+GFGFVT E A +
Sbjct: 3 NRIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAVN 62
Query: 104 YLDRSVLEGRIITVERA 120
+ ++GR + V A
Sbjct: 63 SVHE--MDGRQLVVNLA 77
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 46 LYVTGLSPRITKRE-LEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
+YV GL P IT+ E L +F G+++ +V D T+ S+GFGFVT VE A R +
Sbjct: 11 IYVAGL-PWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 105 LDRSVLEGRIITVERA 120
+ ++ +GR + + A
Sbjct: 70 PNHTI-DGRTVNCKLA 84
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+++++ L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQA 84
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+++++ L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A + +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|F1PJX5 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
Length = 279
Score = 125 (49.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 20 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 76
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 77 ADRAREKLNGTIVEGRKIEVNNA 99
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 126 (49.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS + T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 71 PHSI-DGRVVEPKRA 84
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 122 (48.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 121 (47.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
DA N ++V GL P +T E ++F G V DV ++ D T RGFGFV+ + +
Sbjct: 104 DAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDA 163
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
D + L G+ + V+RA
Sbjct: 164 VDSVLHKTFHD-LSGKQVEVKRA 185
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 297 HEGEALGGAIHVVLAPNGGLTQE-ARGGATLRVYPQGLGRVFPV-GGHPSG 345
H G + GA +P+G Q GG + G + V GG PSG
Sbjct: 319 HSGYGVPGAAPPTQSPSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSG 369
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 125 (49.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
+L V ++ R T +L FA GKV+DV + D T +SRGF FV +EA + ++
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 105 LDRSVLEGRIITVERA 120
LD V++GR ITV+ A
Sbjct: 77 LDGRVVDGREITVQFA 92
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P +L+V ++ +L + F G ++DV++ +D +TR RGF +V V +A+
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 102 IKYLDRSVLEGRIITVERA 120
+ LDR + GR I ++ A
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P +L+V ++ +L + F G ++DV++ +D +TR RGF +V V +A+
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 102 IKYLDRSVLEGRIITVERA 120
+ LDR + GR I ++ A
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|A6NFN3 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
Uniprot:A6NFN3
Length = 312
Score = 125 (49.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 94 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 150
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 151 ADRAREKLNGTIVEGRKIEVNNA 173
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 125 (49.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 82 PHSI-DGRVVEPKRA 95
>UNIPROTKB|J9PAH3 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
Uniprot:J9PAH3
Length = 314
Score = 125 (49.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 35 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 91
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 92 ADRAREKLNGTIVEGRKIEVNNA 114
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 125 (49.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L HF G D ++ DP T+ SRG GF+ ATVEE D +
Sbjct: 16 LFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA- 74
Query: 106 DRSVLEGRIITVERA 120
R ++GR++ +RA
Sbjct: 75 -RPHVDGRVVEPKRA 88
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 35/78 (44%), Positives = 43/78 (55%)
Query: 46 LYVTGLSPRITKRELE--KHFAAEGKVIDVHLVV-DPWTRESRGFGFVTMATVEEADRCI 102
L+V GLS T L HF G + D H+V+ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFVGGLSFEATLESLSLTSHFEQWGTLTD-HVVMRDPNTKRSRGFGFVTYATVEEVDAAM 74
Query: 103 KYLDRSVLEGRIITVERA 120
V GR + +RA
Sbjct: 75 NARPHKV-GGRAVEPKRA 91
>UNIPROTKB|B4DF29 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
Bgee:B4DF29 Uniprot:B4DF29
Length = 325
Score = 125 (49.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 94 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 150
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 151 ADRAREKLNGTIVEGRKIEVNNA 173
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T++ LE F+ G + +VH+ + T SRGFGFVT ++A ++ +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V+ A
Sbjct: 67 NGKSVDGRTIRVDEA 81
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A + +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 125 (49.1 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 71 PHSI-DGRVVEPKRA 84
>WB|WBGene00004984 [details] [associations]
symbol:spn-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0060465 "pharynx development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0060465 GO:GO:0043186 HSSP:P09651
GeneTree:ENSGT00390000013767 KO:K14946 EMBL:FO081573 EMBL:AB052819
PIR:T29369 RefSeq:NP_504717.1 UniGene:Cel.6040
ProteinModelPortal:G5EF02 SMR:G5EF02 IntAct:G5EF02
EnsemblMetazoa:ZC404.8.1 EnsemblMetazoa:ZC404.8.2 GeneID:179070
KEGG:cel:CELE_ZC404.8 CTD:179070 WormBase:ZC404.8 OMA:FTDNRIY
NextBio:903784 Uniprot:G5EF02
Length = 351
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
N +YV+ + +++L F A G+V+ V +V + R S+GFGFVT+ ++E ++
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTND--RGSKGFGFVTLDSIESCEKARA 108
Query: 104 YLDRSVLEGRIITVERA 120
L S ++GRII V RA
Sbjct: 109 ALHESHVQGRIIEVRRA 125
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 82 PHSI-DGRVVEPKRA 95
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 83 PHSI-DGRVVEPKRA 96
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 83 PHSI-DGRVVEPKRA 96
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 83 PHSI-DGRVVEPKRA 96
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 83 PHSI-DGRVVEPKRA 96
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 83 PHSI-DGRVVEPKRA 96
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 83 PHSI-DGRVVEPKRA 96
>UNIPROTKB|J3QRF4 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC021534 EMBL:AC073624 HGNC:HGNC:27097
OMA:LQASLCR EMBL:AC020689 EMBL:AC027824 EMBL:AC055858 EMBL:AC142247
ProteinModelPortal:J3QRF4 Ensembl:ENST00000583458 Uniprot:J3QRF4
Length = 358
Score = 125 (49.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 93 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 149
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 150 ADRAREKLNGTIVEGRKIEVNNA 172
>ZFIN|ZDB-GENE-040426-2647 [details] [associations]
symbol:sltm "SAFB-like, transcription modulator"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
ZFIN:ZDB-GENE-040426-2647 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
EMBL:AL935053 IPI:IPI00490957 Ensembl:ENSDART00000123464
ArrayExpress:E7F7Q8 Bgee:E7F7Q8 Uniprot:E7F7Q8
Length = 992
Score = 129 (50.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
NL+V+GLS +L+ F GKV +V + + ++ +G VTM++ E RCI +
Sbjct: 350 NLWVSGLSSNTKAADLKNLFGKYGKVFSAKVVTNARSPGAKCYGLVTMSSSAEVARCISH 409
Query: 105 LDRSVLEGRIITVER 119
LDR+ L G+ I+V+R
Sbjct: 410 LDRTELHGQQISVDR 424
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 124 (48.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + ++ DP T+ SRGFGFV ATVEE D +
Sbjct: 16 LFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVER 119
V GR++ +R
Sbjct: 76 PNKV-NGRVLEPKR 88
>MGI|MGI:106368 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C.
elegans) 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043025 "neuronal cell
body" evidence=IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0097458 "neuron part" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106368 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622 EMBL:CH466558
GO:GO:0043484 EMBL:AL591075 GO:GO:0000381 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 CTD:146713
EMBL:FJ958310 EMBL:FJ958311 EMBL:AK079086 EMBL:AK160816
EMBL:AL591514 EMBL:AL591544 EMBL:BC054403 IPI:IPI00222115
IPI:IPI00408241 IPI:IPI00648836 IPI:IPI00720112 IPI:IPI00894965
RefSeq:NP_001020102.2 RefSeq:NP_001034256.1 RefSeq:NP_001034257.1
UniGene:Mm.341103 ProteinModelPortal:Q8BIF2 SMR:Q8BIF2
IntAct:Q8BIF2 STRING:Q8BIF2 PaxDb:Q8BIF2 PRIDE:Q8BIF2
Ensembl:ENSMUST00000017576 Ensembl:ENSMUST00000069343
Ensembl:ENSMUST00000103023 Ensembl:ENSMUST00000106278
Ensembl:ENSMUST00000117731 Ensembl:ENSMUST00000120061 GeneID:52897
KEGG:mmu:52897 UCSC:uc007mpo.1 InParanoid:Q8BIF2 OMA:LQASLCR
NextBio:309687 Bgee:Q8BIF2 Genevestigator:Q8BIF2 Uniprot:Q8BIF2
Length = 374
Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 94 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 150
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 151 ADRAREKLNGTIVEGRKIEVNNA 173
>RGD|1560070 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C. elegans)
3" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA;ISO] [GO:0097458 "neuron part" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
RGD:1560070 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0003677 GO:GO:0043025 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473948 GO:GO:0000381
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 OrthoDB:EOG4NVZKS CTD:146713 OMA:LQASLCR
IPI:IPI00370377 RefSeq:NP_001127970.1 UniGene:Rn.143966
Ensembl:ENSRNOT00000004524 GeneID:287847 KEGG:rno:287847
NextBio:627138 Uniprot:D4A2H6
Length = 375
Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 94 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 150
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 151 ADRAREKLNGTIVEGRKIEVNNA 173
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 125 (49.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ +++ LE +F+ G++ +V L+ D T +SRGF FVT +
Sbjct: 3 EADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I VE+A
Sbjct: 62 AKDAAREMNGKPLDGKPIKVEQA 84
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 121 (47.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T++ LE+ F+ G + V ++ D T SRGFGFVT E+A + +
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 106 DRSVLEGRIITVERA 120
+ ++GR+I V+ A
Sbjct: 85 NGKQVDGRMIRVDEA 99
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 107 (42.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
+P + +++ GLS + + L +F+ G++ + ++ DP T+ SRGFGFVT A D+
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 101 CIKY----LDRSVLEGRIITVERA 120
+ LD ++ ++ RA
Sbjct: 74 VLGQPHHELDSKTIDPKVAFPRRA 97
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 115 (45.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + LE+ F G++ +V +V D T+ SRGFGFVT V++A + +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 67 NGKSVDGRQIRVDQA 81
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 120 (47.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L + GLS T L +H G + D ++ DP T SRGFGFVT + VEE D +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 106 DRSVLEGRIITVERA 120
V +GR++ +RA
Sbjct: 61 PHKV-DGRVVEPKRA 74
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 123 (48.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 35/100 (35%), Positives = 49/100 (49%)
Query: 41 NPGNN--LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
NP N L V GLS T+R+L + F+ G + DV +V D +R SRGF FV VE+A
Sbjct: 113 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDA 172
Query: 99 DRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLGLRT 138
+ + L+GR I V+ + Y+G T
Sbjct: 173 KEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212
>UNIPROTKB|F1N700 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043025 "neuronal cell body" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:DAAA02049469 EMBL:DAAA02049462 EMBL:DAAA02049463
EMBL:DAAA02049464 EMBL:DAAA02049465 EMBL:DAAA02049466
EMBL:DAAA02049467 EMBL:DAAA02049468 IPI:IPI00708068
Ensembl:ENSBTAT00000008240 Uniprot:F1N700
Length = 432
Score = 125 (49.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+ + P L+V+ + R +L + F GK++DV ++ + R S+GFGFVT T +
Sbjct: 165 EKQQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSD 221
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L+ +++EGR I V A
Sbjct: 222 ADRAREKLNGTIVEGRKIEVNNA 244
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 122 (48.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|E2R8E1 [details] [associations]
symbol:SLTM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
OMA:HDARRMG EMBL:AAEX03016176 EMBL:AAEX03016175
Ensembl:ENSCAFT00000026278 Uniprot:E2R8E1
Length = 1017
Score = 128 (50.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 368 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 427
Query: 105 LDRSVLEGRIITVER 119
L R+ L G++I+VE+
Sbjct: 428 LHRTELHGQLISVEK 442
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 114 (45.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GLS ++ LE F+ G++ +V +V D T+ SRGFGFVT E+A + +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 68 NGKTVDGRQIRVDQA 82
>UNIPROTKB|F1LRU9 [details] [associations]
symbol:F1LRU9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108 IPI:IPI00566573
PRIDE:F1LRU9 Ensembl:ENSRNOT00000019984 ArrayExpress:F1LRU9
Uniprot:F1LRU9
Length = 1030
Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 383 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 442
Query: 105 LDRSVLEGRIITVER 119
L R+ L G++I+VE+
Sbjct: 443 LHRTELHGQLISVEK 457
>UNIPROTKB|E1BLT2 [details] [associations]
symbol:SLTM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:HDARRMG EMBL:DAAA02028819
EMBL:DAAA02028820 IPI:IPI00715190 Ensembl:ENSBTAT00000015043
Uniprot:E1BLT2
Length = 1033
Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 387 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 446
Query: 105 LDRSVLEGRIITVER 119
L R+ L G++I+VE+
Sbjct: 447 LHRTELHGQLISVEK 461
>UNIPROTKB|Q9NWH9 [details] [associations]
symbol:SLTM "SAFB-like transcription modulator"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0005634 GO:GO:0006915
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 Gene3D:1.10.720.30 CleanEx:HS_MET EMBL:AC025918
EMBL:AC090515 eggNOG:NOG248048 EMBL:AK000867 EMBL:AK023275
EMBL:AK024710 EMBL:BC014944 EMBL:BC046119 EMBL:BC108656
EMBL:BC140851 EMBL:AL834297 IPI:IPI00792743 RefSeq:NP_001013865.1
RefSeq:NP_079031.2 UniGene:Hs.512932 HSSP:Q9UH33
ProteinModelPortal:Q9NWH9 SMR:Q9NWH9 IntAct:Q9NWH9 STRING:Q9NWH9
PhosphoSite:Q9NWH9 DMDM:160185645 PaxDb:Q9NWH9 PRIDE:Q9NWH9
Ensembl:ENST00000380516 GeneID:79811 KEGG:hsa:79811 UCSC:uc002afn.3
CTD:79811 GeneCards:GC15M059171 H-InvDB:HIX0012286 HGNC:HGNC:20709
HPA:HPA040256 neXtProt:NX_Q9NWH9 PharmGKB:PA142670898
HOVERGEN:HBG096731 InParanoid:Q9NWH9 OMA:HDARRMG OrthoDB:EOG4DNF4Q
ChiTaRS:SLTM GenomeRNAi:79811 NextBio:69400 ArrayExpress:Q9NWH9
Bgee:Q9NWH9 CleanEx:HS_SLTM Genevestigator:Q9NWH9 Uniprot:Q9NWH9
Length = 1034
Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104
N++V+GLS +L+ F GKV+ +V + + ++ +G VTM++ E RCI +
Sbjct: 385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 444
Query: 105 LDRSVLEGRIITVER 119
L R+ L G++I+VE+
Sbjct: 445 LHRTELHGQLISVEK 459
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 123 (48.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T+ L ++ GK+ D ++ DP ++ SRGFGFVT +++ E D +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAAR 70
Query: 106 DRSVLEGRIITVERA 120
S+ +GR++ +RA
Sbjct: 71 PHSI-DGRVVEPKRA 84
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 119 (46.9 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 86 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 143
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 144 ADRAREKLHGTVVEGRKIEVNNA 166
Score = 37 (18.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 273 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 324
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 121 (47.7 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
+E+P ++ GL+ + R L F G +++ +V+D ++ SRGFGF+T +
Sbjct: 2 SEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAM 61
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
D I ++ L+GR ITV++A
Sbjct: 62 DEAIAAMNGMDLDGRTITVDKA 83
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 124 (48.7 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
A + ++ L+G+ I V +A
Sbjct: 62 AKAAARDMNGKSLDGKAIKVAQA 84
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 123 (48.4 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 30/75 (40%), Positives = 39/75 (52%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D + DP T+ SRGFGFVT AT+EE D
Sbjct: 30 LFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATNAR 89
Query: 106 DRSVLEGRIITVERA 120
V R++ +RA
Sbjct: 90 PHKV--DRVVEPKRA 102
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 114 (45.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GL+ + LE+ F+ G++ +V +V D T+ SRGFGFVT ++A + +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 67 NGKAVDGRQIRVDQA 81
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 119 (46.9 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 105 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 162
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 163 ADRAREKLHGTVVEGRKIEVNNA 185
Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 292 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 343
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 121 (47.7 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A P +L+V ++ +L + F G ++DV++ +D +TR RGF +V V +A
Sbjct: 5 APPPNTSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDA 64
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ + LDR + GR I ++ A
Sbjct: 65 EDALHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 119 (46.9 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 106 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 163
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 164 ADRAREKLHGTVVEGRKIEVNNA 186
Score = 37 (18.1 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 293 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 344
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 122 (48.0 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEA 98
A + G L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A
Sbjct: 2 ASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 99 DRCIKYLDRSVLEGRIITVERA 120
+ ++ ++GR I V++A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 119 (46.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 105 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 162
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 163 ADRAREKLHGTVVEGRKIEVNNA 185
Score = 37 (18.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 296 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 347
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 119 (46.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 115 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 172
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 173 ADRAREKLHGTVVEGRKIEVNNA 195
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 306 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 357
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 119 (46.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 115 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 172
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 173 ADRAREKLHGTVVEGRKIEVNNA 195
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 306 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 357
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 119 (46.9 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
++++ L+V+ + R +L + F GK++DV ++ + R S+GFGFVT +
Sbjct: 121 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 178
Query: 98 ADRCIKYLDRSVLEGRIITVERA 120
ADR + L +V+EGR I V A
Sbjct: 179 ADRAREKLHGTVVEGRKIEVNNA 201
Score = 37 (18.1 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 289 SFPEVLHR---HEGEALGGAIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF 337
++P V+++ + + GG A T A Y G GRV+
Sbjct: 308 AYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY 359
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 117 (46.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A + +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 106 DRSVLEGRIITVERA 120
+ ++GR I V++A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 105 (42.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
++V GL T L K+F G + + ++ D T +SRG+GFVTMA A+R K
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD- 71
Query: 106 DRSVLEGRIITVERA 120
+++GR V A
Sbjct: 72 PNPIIDGRKANVNLA 86
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 105 (42.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 A 98
A
Sbjct: 62 A 62
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 105 (42.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 98 A 98
A
Sbjct: 64 A 64
WARNING: HSPs involving 342 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.141 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 387 183 0.00076 110 3 11 22 0.42 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 592
No. of states in DFA: 572 (61 KB)
Total size of DFA: 147 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.31u 0.11s 14.42t Elapsed: 00:00:00
Total cpu time: 14.33u 0.11s 14.44t Elapsed: 00:00:01
Start: Sat May 11 13:34:54 2013 End: Sat May 11 13:34:55 2013
WARNINGS ISSUED: 2