BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016540
(387 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 80/126 (63%)
Query: 24 SRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRE 83
S ++ + +S +EN GN+L+V+G++ R+ + EL++ F+ G V V ++ +P T+
Sbjct: 81 STALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKA 140
Query: 84 SRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRVCR 143
SRGFGF++ +TVEEA I L+ GR++ V++A+R R +PTPG+Y+G R R
Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSR 200
Query: 144 RSPSNS 149
PSN+
Sbjct: 201 DFPSNN 206
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G NL+V+GLS +L+ F+ GKVI +V + + +R +GFVTM+T +EA +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509
Query: 103 KYLDRSVLEGRIITVERAR 121
+L R+ L GR+I+VE+A+
Sbjct: 510 SHLHRTELHGRMISVEKAK 528
>sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
Length = 915
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 103 KYLDRSVLEGRIITVERAR 121
+L ++ L G++I+VE+A+
Sbjct: 465 NHLHKTELHGKMISVEKAK 483
>sp|Q5R452|SAFB1_PONAB Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1
Length = 914
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 103 KYLDRSVLEGRIITVERAR 121
+L ++ L G++I+VE+A+
Sbjct: 465 NHLHKTELHGKMISVEKAK 483
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G NL+V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T +EA +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465
Query: 103 KYLDRSVLEGRIITVERAR 121
+L R+ L GR+I+VE+A+
Sbjct: 466 SHLHRTELHGRMISVEKAK 484
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
+P L V GLS T+R+L + F+ G + DV +V D +R SRGF FV V++A
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 101 CIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRVCRR 144
+ + L+GR I V+ + +R TPTPG Y+G T RR
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
+P L V GLS T+R+L + F+ G + DV +V D +R SRGF FV V++A
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 101 CIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRVCRR 144
+ + L+GR I V+ + +R TPTPG Y+G T RR
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
+P L V GLS T+R+L + F+ G + DV +V D +R SRGF FV V++A
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 101 CIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRVCRR 144
+ + L+GR I V+ + +R TPTPG Y+G T RR
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%)
Query: 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADR 100
+P L V GLS T+R+L + F+ G + DV +V D +R SRGF FV V++A
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 101 CIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRVCRR 144
+ + L+GR I V+ + +R TPTPG Y+G T RR
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
>sp|D3YXK2|SAFB1_MOUSE Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2
Length = 937
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 103 KYLDRSVLEGRIITVERAR 121
+L ++ L G++I+VE+A+
Sbjct: 487 SHLHKTELHGKMISVEKAK 505
>sp|O88453|SAFB1_RAT Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1
SV=2
Length = 931
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G N +V+GLS +L+ F+ GKV+ +V + + +R +GFVTM+T EEA +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 103 KYLDRSVLEGRIITVERAR 121
+L ++ L G++I+VE+A+
Sbjct: 487 NHLHKTELHGKMISVEKAK 505
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%)
Query: 32 SRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVT 91
+R+R ++ +P N L V GL+P+ +R+L+ F+ GK+ V L++D T S+ FGFV
Sbjct: 101 TRNRLANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVY 160
Query: 92 MATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
E+A R + L G+ I + + ++ PTPG+Y G
Sbjct: 161 FENKEDAVRAKEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFG 204
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+V++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRVCRRSPSNSPPRRSP 155
A + L+ L+G+ I VE+A + TP+ RR P SP R P
Sbjct: 62 AKDAARELNGKALDGKPIKVEQATKPSFSTPS-------------RRGPPTSPRSRGP 106
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 42/93 (45%)
Query: 10 SRSPSPYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGK 69
+ + +P+ GR + + SR S+ A ++V G+ + L +F GK
Sbjct: 71 AMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 70 VIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
+ + ++ D + + RGF FVT + D+ +
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
GN +++ GLS +K++L ++ + G+V+D + DP T SRGFGFV D+ +
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 103 KYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
+ L L+G++I +RA+ +G+ P ++G
Sbjct: 110 E-LKEHKLDGKLIDPKRAKALKGKEPPKKVFVG 141
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTM 92
R+++ + P ++V GLSP ++ +++++F A G++ ++ L +D T E RGF F+T
Sbjct: 125 RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 184
Query: 93 ATVEEADRCIK 103
E + ++
Sbjct: 185 TDEEPVKKLLE 195
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S+ A ++V G+ + L +F GK+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S+ A ++V G+ + L +F GK+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S+ A ++V G+ + L +F GK+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S+ A ++V G+ + L +F GK+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVEE D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S+ A ++V G+ + L +F GK+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 34 SRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA 93
S ++ A+ +++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 94 TVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
E D+ + + L G++I +RA+ + + P ++G
Sbjct: 147 ESESVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVG 187
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTM 92
R+++ + P ++V GLSP + ++ ++F G+V + L +D T + RGF F+T
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 93 ATVEEADRCIK 103
E + ++
Sbjct: 231 KEEEPVKKIME 241
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G+V+D L +DP T SRGFGFV E D+ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLG 135
+ L G++I +RA+ + + P ++G
Sbjct: 159 EHK-LNGKVIDPKRAKAMKTKEPVKKIFVG 187
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTM 92
R+++ + P ++V GLSP + ++ ++F G+V + L +D T + RGF F+T
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 93 ATVEEADRCIK 103
E + ++
Sbjct: 231 KEEEPVKKIME 241
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
+++ GLS TK++L+ +F+ G V+D L +DP T SRGFGFV E D+ +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLG 135
+ L G++I +RA+ + + P ++G
Sbjct: 157 EHK-LNGKVIDPKRAKAMKTKEPVKKIFVG 185
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTM 92
R+++ + P ++V GLSP + ++ ++F G+V + L +D T + RGF F+T
Sbjct: 169 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
Query: 93 ATVEEADRCIK 103
E + ++
Sbjct: 229 KEEEPVKKIME 239
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF GK+ D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 89 PHKV-DGRVVEPKRAVSRE-DSARPGAHLTVKKIFV 122
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 44/83 (53%)
Query: 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
G LYV L +T +L + FA G V +V +V D T SRGF FVTM +VEEA I
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 103 KYLDRSVLEGRIITVERARRRRG 125
+ D S + GR + V RG
Sbjct: 173 RLFDGSQVGGRTVKVNFPEVPRG 195
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
LYV LS +T + L FA + + ++ D + SRGFGF+T ++ E + + +
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278
Query: 106 DRSVLEGRIITVERARRR 123
+ LEGR + + A ++
Sbjct: 279 NEVELEGRPLRLNVAGQK 296
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L HF G + D ++ DP T+ SRGFGFVT ATVE+ D +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 75
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 76 PHKV-DGRVVEPKRAVSRE-DSQRPGAHLTVKKIFV 109
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S+ A ++V G+ + L +F GK+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT D+ +
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHNSVDKIV 163
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 32 SRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVT 91
S+ +S + +++ GLS +K++L ++ + G+V+D + DP T SRGFGFV
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 92 MATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
D+ ++ L L+G++I +RA+ +G+ P ++G
Sbjct: 196 FKDAASVDKVLE-LKEHKLDGKLIDPKRAKALKGKEPPKKVFVG 238
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTM 92
R+++ + P ++V GLSP ++ +++++F A G++ ++ L +D T E RGF F+T
Sbjct: 222 RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
Query: 93 ATVEEADRCIK 103
E + ++
Sbjct: 282 TDEEPVKKLLE 292
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+++++ L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%)
Query: 27 MSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRG 86
MS R + S +P L V GLS T+R+L + F+ G + V++V D T SRG
Sbjct: 100 MSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG 159
Query: 87 FGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
F FV ++++ ++ + L+GR I V+ + +R TPTPG Y+G
Sbjct: 160 FAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%)
Query: 27 MSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRG 86
MS R + S +P L V GLS T+R+L + F+ G + V++V D T SRG
Sbjct: 102 MSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG 161
Query: 87 FGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
F FV ++++ ++ + L+GR I V+ + +R TPTPG Y+G
Sbjct: 162 FAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF GK+ D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R + PG +L ++ I V
Sbjct: 89 PHKV-DGRVVEPKRAVSRE-DSARPGAHLTVKKIFV 122
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%)
Query: 10 SRSPSPYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGK 69
S S P+ GR + + SR S A ++V G+ + L +F GK
Sbjct: 84 SMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGK 143
Query: 70 VIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102
+ + ++ D + + RGF FVT + D+ +
Sbjct: 144 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+++++ L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATK 86
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P +YV L + LE+ F+ GKV++ +V D T SRGFGFVTM+ V+E +
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 102 IKYLDRSVLEGRIITVERARRR 123
I LD LEGR I V A R
Sbjct: 302 ISALDGQNLEGRAIRVNVAEER 323
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V L+ + + L F G V ++ + T +SRGFGFVTM++V+EA+ ++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 106 DRSVLEGRIITVERARRRRGR 126
+R L GR++TV +A R R
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSR 232
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G+++++ L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I VE+A +
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATK 86
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 32 SRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVT 91
S+ +S + +++ GLS +K++L ++ + G+V+D + DP T SRGFGFV
Sbjct: 17 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 76
Query: 92 MATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLG 135
D+ ++ L L+G++I +RA+ +G+ P ++G
Sbjct: 77 FKDAASVDKVLE-LKEHKLDGKLIDPKRAKALKGKEPPKKVFVG 119
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTM 92
R+++ + P ++V GLSP ++ +++++F A G++ ++ L +D T E RGF F+T
Sbjct: 103 RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 162
Query: 93 ATVEEADRCIK 103
E + ++
Sbjct: 163 TDEEPVKKLLE 173
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVE 96
++A+ PG L++ GL+ +++ LE +F+ G++ +V L+ D T +SRGF FVT
Sbjct: 2 AEADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 97 EADRCIKYLDRSVLEGRIITVERARR 122
+A + ++ L+G+ I VE+A +
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVEQATK 86
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GL+ + ++ L+ F G +I V L+ D T +SRGF FVT + +A + +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 106 DRSVLEGRIITVERARR-----RRGRTPTPGRYLGLRTIRVCRRSPSNSPPRRSPS 156
+ L+G+ I V + + R PTPG G R+ R S P+R PS
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFESSRWVPPTPG--SGSRSRFSHRTRGGGSSPQRPPS 123
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 106 DRSVLEGRIITVERARR 122
+ ++GR I V++A +
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L+V GLS ++ LE+ F+ G++ +V +V D T+ SRGFGFVT +++A + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 106 DRSVLEGRIITVERARR 122
+ ++GR I V++A +
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R PG +L ++ I V
Sbjct: 97 PHKV-DGRVVEPKRAVSREDSV-KPGAHLTVKKIFV 130
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S A ++V G+ + L +F GK+ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R PG +L ++ I V
Sbjct: 97 PHKV-DGRVVEPKRAVSREDSV-KPGAHLTVKKIFV 130
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S A ++V G+ + L +F GK+ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105
L++ GLS T L +HF G + D ++ DP T+ SRGFGFVT + VEE D +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 106 DRSVLEGRIITVERARRRRGRTPTPGRYLGLRTIRV 141
V +GR++ +RA R PG +L ++ I V
Sbjct: 97 PHKV-DGRVVEPKRAVSREDSV-KPGAHLTVKKIFV 130
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 15 PYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH 74
P+ GR + + SR S A ++V G+ + L +F GK+ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 75 LVVDPWTRESRGFGFVTMATVEEADRCI 102
++ D + + RGF FVT + D+ +
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEE 97
+A+ PG L++ GL+ ++ LE F G++++V L+ D T +SRGF FVT + +
Sbjct: 3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 98 ADRCIKYLDRSVLEGRIITVERARR 122
A + ++ L+G+ I V +A +
Sbjct: 62 AKAAARDMNGKSLDGKAIKVAQATK 86
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103
N +YV L+ + + LE F+ +GKV+D +V D + SRGFGFVT ++ EE + I+
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253
Query: 104 YLDRSVLEGRIITVERARRR 123
LD L GR I V A R
Sbjct: 254 SLDGVDLNGRAIRVSPAEAR 273
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRC 101
P ++V L L + F G V V ++ D T SRGFGFVTM++ EE +
Sbjct: 85 PDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144
Query: 102 IKYLDRSVLEGRIITV 117
+ + L+GR + V
Sbjct: 145 CQQFNGYELDGRALRV 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,995,428
Number of Sequences: 539616
Number of extensions: 6991598
Number of successful extensions: 35140
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 556
Number of HSP's that attempted gapping in prelim test: 20355
Number of HSP's gapped (non-prelim): 8033
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)