Query 016540
Match_columns 387
No_of_seqs 402 out of 2452
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4207 Predicted splicing fac 99.9 6.5E-20 1.4E-24 166.8 19.6 89 37-125 7-95 (256)
2 KOG0107 Alternative splicing f 99.8 1.8E-19 3.8E-24 160.3 16.7 79 41-124 8-86 (195)
3 PLN03134 glycine-rich RNA-bind 99.8 4.5E-18 9.7E-23 150.1 15.0 86 40-125 31-116 (144)
4 KOG0113 U1 small nuclear ribon 99.7 6.2E-17 1.3E-21 154.2 17.9 102 38-139 96-197 (335)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.9E-16 1.1E-20 154.1 13.1 84 41-124 267-350 (352)
6 TIGR01659 sex-lethal sex-letha 99.6 6.5E-16 1.4E-20 154.4 11.7 86 38-123 102-187 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 8.3E-16 1.8E-20 152.5 11.9 83 42-124 2-84 (352)
8 PF00076 RRM_1: RNA recognitio 99.6 1.8E-15 3.8E-20 114.7 10.2 70 46-116 1-70 (70)
9 TIGR01622 SF-CC1 splicing fact 99.6 1.5E-14 3.3E-19 148.8 14.7 83 40-123 86-168 (457)
10 KOG0122 Translation initiation 99.6 6.5E-15 1.4E-19 137.2 9.7 83 41-123 187-269 (270)
11 TIGR01659 sex-lethal sex-letha 99.6 1.3E-14 2.8E-19 145.1 11.9 84 41-124 191-276 (346)
12 KOG0121 Nuclear cap-binding pr 99.6 7.5E-15 1.6E-19 124.9 7.4 83 40-122 33-115 (153)
13 KOG0105 Alternative splicing f 99.6 1.3E-14 2.8E-19 130.4 9.2 81 42-125 5-85 (241)
14 KOG0149 Predicted RNA-binding 99.6 7.3E-15 1.6E-19 136.4 7.5 81 41-122 10-90 (247)
15 PF14259 RRM_6: RNA recognitio 99.5 5.3E-14 1.1E-18 107.7 10.2 70 46-116 1-70 (70)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.2E-13 2.7E-18 143.8 13.3 84 40-123 292-375 (509)
17 TIGR01645 half-pint poly-U bin 99.5 1.8E-13 4E-18 144.7 13.1 83 42-124 203-285 (612)
18 PLN03120 nucleic acid binding 99.5 1.5E-13 3.3E-18 131.0 11.1 77 43-123 4-80 (260)
19 TIGR01622 SF-CC1 splicing fact 99.5 1.4E-13 3E-18 141.6 11.6 80 43-122 186-265 (457)
20 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 5E-18 101.6 9.7 72 45-118 1-72 (72)
21 KOG0130 RNA-binding protein RB 99.5 5.4E-14 1.2E-18 120.7 7.0 87 38-124 67-153 (170)
22 KOG0125 Ataxin 2-binding prote 99.5 1.1E-13 2.3E-18 133.7 9.6 84 38-123 91-174 (376)
23 TIGR01645 half-pint poly-U bin 99.5 1.3E-13 2.8E-18 145.8 10.5 82 40-121 104-185 (612)
24 KOG0126 Predicted RNA-binding 99.5 6.2E-15 1.3E-19 132.1 0.1 80 42-121 34-113 (219)
25 PLN03213 repressor of silencin 99.5 1.8E-13 3.9E-18 137.8 10.2 80 39-122 6-87 (759)
26 TIGR01628 PABP-1234 polyadenyl 99.4 3.5E-13 7.6E-18 142.6 11.5 79 44-122 1-79 (562)
27 smart00360 RRM RNA recognition 99.4 5.9E-13 1.3E-17 98.8 8.9 71 48-118 1-71 (71)
28 COG0724 RNA-binding proteins ( 99.4 5.9E-13 1.3E-17 123.0 10.7 80 43-122 115-194 (306)
29 TIGR01628 PABP-1234 polyadenyl 99.4 5.8E-13 1.3E-17 140.9 11.7 84 40-124 282-365 (562)
30 TIGR01648 hnRNP-R-Q heterogene 99.4 5E-13 1.1E-17 141.0 10.4 80 40-120 55-135 (578)
31 PLN03121 nucleic acid binding 99.4 1.1E-12 2.4E-17 123.4 10.8 77 42-122 4-80 (243)
32 KOG0111 Cyclophilin-type pepti 99.4 1.5E-13 3.3E-18 126.4 4.8 86 40-125 7-92 (298)
33 cd00590 RRM RRM (RNA recogniti 99.4 2.4E-12 5.3E-17 96.5 10.3 74 45-119 1-74 (74)
34 KOG0415 Predicted peptidyl pro 99.4 4.2E-13 9.2E-18 130.6 7.5 87 37-123 233-319 (479)
35 KOG0148 Apoptosis-promoting RN 99.4 6.4E-13 1.4E-17 125.6 8.4 88 37-124 56-143 (321)
36 KOG0131 Splicing factor 3b, su 99.4 3.9E-13 8.5E-18 120.7 6.4 83 39-121 5-87 (203)
37 KOG0117 Heterogeneous nuclear 99.4 1.7E-12 3.7E-17 129.7 10.3 82 40-121 80-162 (506)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.2E-12 6.8E-17 133.3 12.1 79 40-123 272-351 (481)
39 TIGR01648 hnRNP-R-Q heterogene 99.4 3.7E-12 8.1E-17 134.5 11.5 76 41-124 231-308 (578)
40 KOG0114 Predicted RNA-binding 99.4 5E-12 1.1E-16 104.2 9.7 85 36-123 11-95 (124)
41 KOG0108 mRNA cleavage and poly 99.3 2.1E-12 4.5E-17 131.9 8.5 82 44-125 19-100 (435)
42 KOG0145 RNA-binding protein EL 99.3 4.3E-12 9.4E-17 119.5 9.1 88 38-125 36-123 (360)
43 KOG0148 Apoptosis-promoting RN 99.3 6.3E-12 1.4E-16 118.9 9.9 82 38-125 159-240 (321)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.1E-11 2.3E-16 129.3 10.9 76 42-123 1-78 (481)
45 KOG0127 Nucleolar protein fibr 99.3 1.2E-11 2.7E-16 126.1 9.5 85 40-125 114-198 (678)
46 KOG0109 RNA-binding protein LA 99.3 6.5E-12 1.4E-16 119.9 6.4 73 43-123 2-74 (346)
47 KOG0145 RNA-binding protein EL 99.3 2.9E-11 6.3E-16 113.9 10.6 84 40-123 275-358 (360)
48 KOG0127 Nucleolar protein fibr 99.3 1.9E-11 4.1E-16 124.7 9.9 88 37-124 286-379 (678)
49 smart00361 RRM_1 RNA recogniti 99.3 3.1E-11 6.8E-16 93.3 8.7 61 57-117 2-69 (70)
50 KOG0146 RNA-binding protein ET 99.2 8.4E-12 1.8E-16 117.9 5.8 86 39-124 281-366 (371)
51 KOG0144 RNA-binding protein CU 99.2 3E-11 6.5E-16 120.5 10.0 91 36-126 27-120 (510)
52 PF13893 RRM_5: RNA recognitio 99.2 5.1E-11 1.1E-15 87.7 8.6 56 60-120 1-56 (56)
53 KOG0144 RNA-binding protein CU 99.2 1.3E-11 2.9E-16 122.9 6.0 85 42-127 123-210 (510)
54 KOG0117 Heterogeneous nuclear 99.2 2.4E-11 5.2E-16 121.6 7.7 78 42-127 258-335 (506)
55 KOG4212 RNA-binding protein hn 99.2 8.8E-11 1.9E-15 117.2 10.6 79 43-122 44-123 (608)
56 KOG0124 Polypyrimidine tract-b 99.2 1.4E-11 3E-16 120.6 4.5 79 42-120 112-190 (544)
57 KOG0147 Transcriptional coacti 99.1 4.7E-11 1E-15 122.2 6.4 83 41-123 276-358 (549)
58 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.3E-10 4.9E-15 119.3 9.4 72 43-121 175-258 (509)
59 KOG0132 RNA polymerase II C-te 99.1 4.8E-10 1E-14 118.4 11.4 77 43-125 421-497 (894)
60 KOG0109 RNA-binding protein LA 99.1 1.6E-10 3.4E-15 110.5 6.8 77 41-125 76-152 (346)
61 KOG0131 Splicing factor 3b, su 99.1 2.6E-10 5.7E-15 102.6 7.3 89 37-125 90-179 (203)
62 KOG4205 RNA-binding protein mu 99.0 8.6E-10 1.9E-14 108.5 8.9 115 14-129 68-182 (311)
63 KOG4208 Nucleolar RNA-binding 99.0 2.6E-09 5.6E-14 98.0 8.7 86 38-123 44-130 (214)
64 KOG0123 Polyadenylate-binding 98.9 2.3E-09 5E-14 108.3 8.8 78 46-126 79-156 (369)
65 KOG4205 RNA-binding protein mu 98.9 1.1E-09 2.3E-14 107.8 5.4 83 42-125 5-87 (311)
66 KOG0106 Alternative splicing f 98.9 1.2E-09 2.6E-14 102.0 5.4 73 44-124 2-74 (216)
67 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.1E-09 6.8E-14 109.1 8.8 82 42-123 404-485 (940)
68 KOG0110 RNA-binding protein (R 98.9 3.7E-09 7.9E-14 111.2 8.5 80 42-121 514-596 (725)
69 KOG4212 RNA-binding protein hn 98.9 3.3E-09 7.2E-14 106.2 7.5 78 38-120 531-608 (608)
70 KOG4206 Spliceosomal protein s 98.9 6.7E-09 1.5E-13 96.5 8.4 81 41-124 7-91 (221)
71 KOG0124 Polypyrimidine tract-b 98.9 4.4E-09 9.4E-14 103.3 7.4 81 42-122 209-289 (544)
72 KOG0533 RRM motif-containing p 98.8 1.2E-08 2.6E-13 97.0 9.1 84 39-123 79-162 (243)
73 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 99.7 8.7 79 38-122 223-302 (377)
74 KOG0116 RasGAP SH3 binding pro 98.8 3.1E-08 6.8E-13 101.0 11.8 88 36-124 281-368 (419)
75 KOG0110 RNA-binding protein (R 98.8 5.1E-09 1.1E-13 110.1 5.0 82 42-123 612-693 (725)
76 KOG0146 RNA-binding protein ET 98.7 1E-08 2.2E-13 97.2 5.3 83 42-125 18-103 (371)
77 KOG4209 Splicing factor RNPS1, 98.7 1.6E-08 3.4E-13 96.0 6.0 85 38-123 96-180 (231)
78 KOG0123 Polyadenylate-binding 98.7 3.5E-08 7.5E-13 99.8 8.2 74 44-123 2-75 (369)
79 PF04059 RRM_2: RNA recognitio 98.6 1.9E-07 4.1E-12 77.1 9.5 80 44-123 2-87 (97)
80 KOG1548 Transcription elongati 98.6 9.6E-08 2.1E-12 93.5 8.6 84 40-124 131-222 (382)
81 KOG1457 RNA binding protein (c 98.6 2E-07 4.3E-12 86.7 9.4 86 39-124 30-119 (284)
82 KOG4454 RNA binding protein (R 98.6 2E-08 4.3E-13 93.0 1.9 81 39-121 5-85 (267)
83 KOG0151 Predicted splicing reg 98.6 1.9E-07 4.2E-12 98.3 8.7 83 40-122 171-256 (877)
84 KOG4660 Protein Mei2, essentia 98.5 9.6E-08 2.1E-12 98.4 4.3 72 40-116 72-143 (549)
85 KOG1995 Conserved Zn-finger pr 98.5 2.1E-07 4.5E-12 91.7 5.6 85 40-124 63-155 (351)
86 KOG0106 Alternative splicing f 98.5 2.8E-07 6E-12 86.2 6.1 72 38-117 94-165 (216)
87 KOG0226 RNA-binding proteins [ 98.3 5.3E-07 1.1E-11 85.3 5.1 83 40-122 187-269 (290)
88 KOG4676 Splicing factor, argin 98.3 5E-08 1.1E-12 96.7 -2.3 75 42-121 150-224 (479)
89 KOG4211 Splicing factor hnRNP- 98.3 1.8E-06 3.8E-11 88.2 8.6 78 42-123 9-86 (510)
90 KOG0120 Splicing factor U2AF, 98.3 6.1E-07 1.3E-11 93.0 4.6 89 36-124 282-370 (500)
91 KOG4676 Splicing factor, argin 98.3 2.1E-06 4.4E-11 85.5 7.6 74 44-118 8-84 (479)
92 KOG1190 Polypyrimidine tract-b 98.2 1.1E-05 2.5E-10 80.7 10.2 77 43-124 297-374 (492)
93 KOG0105 Alternative splicing f 98.1 2.1E-05 4.6E-10 71.5 9.3 67 38-111 110-176 (241)
94 PF08777 RRM_3: RNA binding mo 98.1 7.7E-06 1.7E-10 68.5 5.8 72 43-120 1-77 (105)
95 KOG0147 Transcriptional coacti 98.0 4.2E-06 9.2E-11 86.3 4.0 83 41-124 177-259 (549)
96 KOG4206 Spliceosomal protein s 98.0 2.2E-05 4.8E-10 73.3 8.2 77 40-121 143-220 (221)
97 PF11608 Limkain-b1: Limkain b 98.0 2.5E-05 5.5E-10 62.5 7.2 71 44-124 3-78 (90)
98 KOG1457 RNA binding protein (c 98.0 6.5E-06 1.4E-10 76.8 4.1 66 42-111 209-274 (284)
99 KOG4211 Splicing factor hnRNP- 97.8 5.2E-05 1.1E-09 77.6 8.1 80 41-122 101-181 (510)
100 KOG2314 Translation initiation 97.8 7.1E-05 1.5E-09 77.7 9.0 83 38-121 53-142 (698)
101 KOG4849 mRNA cleavage factor I 97.7 2.3E-05 4.9E-10 77.2 3.8 77 42-118 79-157 (498)
102 KOG1456 Heterogeneous nuclear 97.7 0.00027 5.8E-09 70.4 11.2 85 34-123 278-363 (494)
103 KOG4210 Nuclear localization s 97.7 1.6E-05 3.5E-10 77.8 2.8 83 41-124 182-265 (285)
104 COG5175 MOT2 Transcriptional r 97.7 7.6E-05 1.7E-09 73.3 7.0 84 40-123 111-203 (480)
105 KOG2202 U2 snRNP splicing fact 97.6 2.2E-05 4.8E-10 74.5 2.1 78 58-136 83-161 (260)
106 KOG4307 RNA binding protein RB 97.6 0.00022 4.7E-09 75.7 7.9 78 42-119 865-943 (944)
107 KOG1548 Transcription elongati 97.5 0.00049 1.1E-08 68.0 9.0 77 42-122 264-351 (382)
108 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.9E-09 51.9 5.5 52 44-102 2-53 (53)
109 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00069 1.5E-08 56.3 7.9 80 41-122 4-91 (100)
110 KOG0129 Predicted RNA-binding 97.4 0.00059 1.3E-08 70.4 8.6 68 37-104 364-432 (520)
111 KOG0120 Splicing factor U2AF, 97.3 0.00055 1.2E-08 71.4 7.7 64 59-122 425-491 (500)
112 KOG1365 RNA-binding protein Fu 97.2 0.0004 8.7E-09 69.3 5.3 79 42-121 279-360 (508)
113 KOG1855 Predicted RNA-binding 97.2 0.00036 7.7E-09 70.6 4.9 72 37-108 225-309 (484)
114 KOG1190 Polypyrimidine tract-b 97.2 0.0008 1.7E-08 67.8 6.5 79 40-122 411-490 (492)
115 KOG1456 Heterogeneous nuclear 97.1 0.0024 5.2E-08 63.8 8.7 82 38-124 115-200 (494)
116 KOG3152 TBP-binding protein, a 97.0 0.00057 1.2E-08 65.1 3.6 72 43-114 74-157 (278)
117 KOG0129 Predicted RNA-binding 96.9 0.0022 4.7E-08 66.4 7.4 66 40-106 256-327 (520)
118 PF08952 DUF1866: Domain of un 96.9 0.0055 1.2E-07 54.1 8.8 75 41-124 25-108 (146)
119 KOG1996 mRNA splicing factor [ 96.9 0.003 6.4E-08 61.4 7.3 65 58-122 301-366 (378)
120 KOG4307 RNA binding protein RB 96.7 0.0021 4.6E-08 68.5 5.4 103 17-120 408-511 (944)
121 KOG2416 Acinus (induces apopto 96.7 0.0019 4.2E-08 67.7 4.6 81 37-123 438-522 (718)
122 KOG0112 Large RNA-binding prot 96.4 0.0031 6.7E-08 68.9 4.1 79 39-123 451-531 (975)
123 KOG0128 RNA-binding protein SA 96.4 0.0018 4E-08 70.3 2.3 80 43-123 736-815 (881)
124 KOG1365 RNA-binding protein Fu 96.3 0.0082 1.8E-07 60.3 6.6 70 45-116 163-236 (508)
125 KOG2193 IGF-II mRNA-binding pr 96.0 0.0058 1.2E-07 62.0 3.6 73 44-124 2-77 (584)
126 KOG4660 Protein Mei2, essentia 96.0 0.01 2.2E-07 62.1 5.3 80 44-123 389-473 (549)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.018 4E-07 52.6 6.1 84 40-123 4-98 (176)
128 PF10309 DUF2414: Protein of u 95.9 0.049 1.1E-06 41.4 7.4 55 43-105 5-62 (62)
129 KOG0128 RNA-binding protein SA 95.9 0.00047 1E-08 74.7 -5.1 69 43-111 667-735 (881)
130 KOG2068 MOT2 transcription fac 95.7 0.0034 7.3E-08 62.0 0.6 83 41-123 75-163 (327)
131 KOG4285 Mitotic phosphoprotein 95.3 0.059 1.3E-06 52.7 7.6 71 43-121 197-268 (350)
132 KOG0115 RNA-binding protein p5 95.2 0.02 4.4E-07 54.8 4.0 76 44-120 32-111 (275)
133 PF15023 DUF4523: Protein of u 95.2 0.078 1.7E-06 46.8 7.3 76 38-121 81-160 (166)
134 KOG2135 Proteins containing th 95.2 0.015 3.3E-07 59.7 3.3 80 37-123 366-446 (526)
135 PF08675 RNA_bind: RNA binding 95.2 0.071 1.5E-06 42.9 6.2 55 44-107 10-64 (87)
136 PF03880 DbpA: DbpA RNA bindin 95.1 0.1 2.2E-06 40.7 7.0 67 45-120 2-74 (74)
137 KOG2591 c-Mpl binding protein, 95.1 0.03 6.5E-07 58.7 5.0 69 42-117 174-246 (684)
138 PF07576 BRAP2: BRCA1-associat 94.6 0.28 6E-06 41.5 9.0 69 42-112 11-81 (110)
139 KOG0112 Large RNA-binding prot 94.5 0.0087 1.9E-07 65.6 -0.6 81 38-119 367-447 (975)
140 PF04847 Calcipressin: Calcipr 94.0 0.15 3.2E-06 47.1 6.4 62 56-123 8-71 (184)
141 KOG2253 U1 snRNP complex, subu 93.9 0.036 7.9E-07 59.1 2.6 76 36-120 33-108 (668)
142 KOG4368 Predicted RNA binding 93.5 0.22 4.7E-06 52.7 7.4 21 322-344 700-720 (757)
143 KOG4207 Predicted splicing fac 92.7 0.89 1.9E-05 42.6 9.3 24 87-110 60-85 (256)
144 KOG4574 RNA-binding protein (c 92.3 0.12 2.5E-06 56.7 3.6 72 48-125 303-376 (1007)
145 KOG4210 Nuclear localization s 92.3 0.079 1.7E-06 52.1 2.1 82 42-123 87-168 (285)
146 KOG0804 Cytoplasmic Zn-finger 92.0 0.5 1.1E-05 48.7 7.5 69 42-112 73-142 (493)
147 PF11767 SET_assoc: Histone ly 92.0 0.64 1.4E-05 35.7 6.4 55 54-117 11-65 (66)
148 KOG2318 Uncharacterized conser 89.1 1.8 4E-05 46.0 8.6 81 40-120 171-305 (650)
149 KOG4410 5-formyltetrahydrofola 83.8 3.4 7.3E-05 40.5 6.8 69 33-106 320-395 (396)
150 KOG4019 Calcineurin-mediated s 82.0 1.4 3E-05 40.5 3.2 77 41-123 8-90 (193)
151 smart00596 PRE_C2HC PRE_C2HC d 82.0 2 4.3E-05 33.3 3.6 63 58-123 2-65 (69)
152 KOG2548 SWAP mRNA splicing reg 80.8 1.5 3.3E-05 46.1 3.4 6 339-344 549-554 (653)
153 KOG2193 IGF-II mRNA-binding pr 80.6 0.12 2.6E-06 52.8 -4.5 77 43-123 80-157 (584)
154 PF07530 PRE_C2HC: Associated 80.0 3.1 6.8E-05 32.1 4.2 63 58-123 2-65 (68)
155 KOG2548 SWAP mRNA splicing reg 78.3 2 4.3E-05 45.2 3.4 8 377-384 557-564 (653)
156 PF03468 XS: XS domain; Inter 69.7 11 0.00024 32.1 5.4 56 45-103 10-75 (116)
157 KOG4483 Uncharacterized conser 69.2 17 0.00036 37.4 7.2 56 41-103 389-445 (528)
158 COG0724 RNA-binding proteins ( 67.8 5.3 0.00011 36.3 3.3 67 38-104 220-286 (306)
159 PRK11634 ATP-dependent RNA hel 64.5 1.2E+02 0.0026 33.3 13.3 71 43-122 486-562 (629)
160 COG5638 Uncharacterized conser 59.3 32 0.00069 35.6 7.1 84 37-120 140-295 (622)
161 PF10567 Nab6_mRNP_bdg: RNA-re 58.1 23 0.0005 35.0 5.7 84 38-121 10-106 (309)
162 KOG4454 RNA binding protein (R 58.1 2.2 4.7E-05 40.4 -1.2 72 41-113 78-153 (267)
163 KOG0107 Alternative splicing f 56.8 1.6E+02 0.0035 27.2 10.5 8 95-102 60-67 (195)
164 PF00403 HMA: Heavy-metal-asso 55.5 56 0.0012 23.6 6.3 54 45-104 1-58 (62)
165 KOG2146 Splicing coactivator S 54.7 2.3E+02 0.005 28.2 14.7 7 210-216 218-224 (354)
166 KOG1295 Nonsense-mediated deca 52.3 18 0.0004 36.8 4.2 70 42-111 6-78 (376)
167 PRK10629 EnvZ/OmpR regulon mod 51.6 1E+02 0.0023 26.6 8.2 72 42-121 34-109 (127)
168 KOG2888 Putative RNA binding p 51.1 14 0.0003 37.1 3.0 14 286-299 389-402 (453)
169 KOG1847 mRNA splicing factor [ 49.2 20 0.00043 39.0 4.0 31 286-316 806-838 (878)
170 KOG0835 Cyclin L [General func 47.1 45 0.00098 33.6 5.9 19 85-103 173-191 (367)
171 KOG2295 C2H2 Zn-finger protein 46.1 2.9 6.2E-05 44.4 -2.7 71 41-111 229-299 (648)
172 KOG2891 Surface glycoprotein [ 45.6 28 0.00061 34.2 4.1 67 43-109 149-246 (445)
173 PRK14548 50S ribosomal protein 43.8 90 0.002 25.1 6.2 58 45-105 22-81 (84)
174 COG2313 IndA Uncharacterized e 43.1 16 0.00035 35.4 2.0 22 358-386 141-162 (310)
175 COG0150 PurM Phosphoribosylami 42.2 8 0.00017 38.9 -0.1 48 57-108 275-322 (345)
176 TIGR03636 L23_arch archaeal ri 38.6 1.3E+02 0.0028 23.8 6.2 57 45-104 15-73 (77)
177 KOG0835 Cyclin L [General func 37.8 56 0.0012 32.9 4.9 6 44-49 174-179 (367)
178 PF14893 PNMA: PNMA 36.5 37 0.0008 34.3 3.5 78 40-122 15-96 (331)
179 KOG2146 Splicing coactivator S 35.3 2.3E+02 0.0049 28.2 8.5 17 90-106 57-73 (354)
180 KOG3263 Nucleic acid binding p 34.9 7.8 0.00017 35.3 -1.4 8 347-354 162-169 (196)
181 KOG3702 Nuclear polyadenylated 34.8 26 0.00056 38.2 2.2 72 43-115 511-582 (681)
182 PF15513 DUF4651: Domain of un 34.2 79 0.0017 24.1 4.1 18 58-75 9-26 (62)
183 PF02714 DUF221: Domain of unk 32.5 48 0.001 32.5 3.7 35 88-124 1-35 (325)
184 PRK11901 hypothetical protein; 31.2 1E+02 0.0022 31.1 5.5 64 41-109 243-308 (327)
185 KOG4008 rRNA processing protei 31.0 35 0.00075 32.8 2.2 34 40-73 37-70 (261)
186 PRK08559 nusG transcription an 29.9 1.4E+02 0.0029 26.5 5.7 34 70-108 36-69 (153)
187 PF04227 Indigoidine_A: Indigo 29.4 32 0.0007 34.0 1.7 38 335-386 112-149 (293)
188 KOG4365 Uncharacterized conser 29.1 8.4 0.00018 40.0 -2.4 77 44-121 4-80 (572)
189 KOG1847 mRNA splicing factor [ 28.6 64 0.0014 35.3 3.8 23 279-301 795-817 (878)
190 COG2608 CopZ Copper chaperone 27.6 2.7E+02 0.0059 21.1 7.4 56 43-104 3-62 (71)
191 PTZ00191 60S ribosomal protein 27.1 1.9E+02 0.0041 25.8 6.0 56 45-103 83-140 (145)
192 PF04127 DFP: DNA / pantothena 26.4 2E+02 0.0044 26.3 6.4 59 45-105 20-79 (185)
193 PF09144 YpM: Yersinia pseudot 26.3 36 0.00078 27.7 1.2 17 325-341 6-22 (117)
194 COG5193 LHP1 La protein, small 25.0 32 0.00069 35.4 0.8 63 41-103 172-244 (438)
195 PF08544 GHMP_kinases_C: GHMP 24.3 2.5E+02 0.0053 21.2 5.7 44 58-106 37-80 (85)
196 PF03439 Spt5-NGN: Early trans 24.1 1.5E+02 0.0032 23.5 4.4 26 84-109 43-68 (84)
197 PF06495 Transformer: Fruit fl 24.0 84 0.0018 28.8 3.2 54 168-221 57-110 (182)
198 smart00195 DSPc Dual specifici 23.9 1.9E+02 0.0042 24.2 5.5 70 45-118 7-84 (138)
199 PRK11036 putative S-adenosyl-L 23.7 52 0.0011 31.1 2.1 58 328-385 40-99 (255)
200 PRK01178 rps24e 30S ribosomal 23.6 2E+02 0.0042 23.9 5.1 46 54-100 30-80 (99)
201 PF08734 GYD: GYD domain; Int 23.4 3.2E+02 0.0069 21.9 6.3 46 57-106 22-68 (91)
202 KOG2812 Uncharacterized conser 22.9 4.4E+02 0.0096 27.0 8.3 10 349-358 330-339 (426)
203 KOG0151 Predicted splicing reg 22.9 82 0.0018 34.9 3.4 12 88-99 695-706 (877)
204 KOG0156 Cytochrome P450 CYP2 s 22.8 1.4E+02 0.0031 31.6 5.2 62 44-115 33-97 (489)
205 PF13806 Rieske_2: Rieske-like 22.5 38 0.00083 28.0 0.8 61 325-387 7-69 (104)
206 PF01851 PC_rep: Proteasome/cy 22.4 42 0.00092 22.2 0.8 14 366-379 3-16 (35)
207 PF14021 DUF4237: Protein of u 22.2 74 0.0016 25.9 2.4 35 332-374 54-88 (90)
208 PF05189 RTC_insert: RNA 3'-te 22.2 1.6E+02 0.0035 24.0 4.4 49 45-93 12-65 (103)
209 PF12847 Methyltransf_18: Meth 21.8 60 0.0013 25.8 1.8 50 336-385 5-58 (112)
210 PRK09511 nirD nitrite reductas 21.8 41 0.00089 27.9 0.8 48 325-372 9-59 (108)
211 KOG4213 RNA-binding protein La 21.4 2E+02 0.0044 26.6 5.2 50 55-104 118-169 (205)
212 PF09707 Cas_Cas2CT1978: CRISP 21.1 1.9E+02 0.0042 23.3 4.5 50 41-93 23-72 (86)
213 CHL00123 rps6 ribosomal protei 21.0 3.5E+02 0.0075 22.0 6.2 58 45-104 10-81 (97)
214 PF11823 DUF3343: Protein of u 20.9 1.1E+02 0.0023 23.4 2.9 27 87-113 3-29 (73)
215 cd00027 BRCT Breast Cancer Sup 20.8 2.9E+02 0.0064 19.0 5.7 27 44-70 2-28 (72)
216 KOG0829 60S ribosomal protein 20.8 1.7E+02 0.0037 26.4 4.4 64 37-100 11-85 (169)
217 smart00666 PB1 PB1 domain. Pho 20.7 3.8E+02 0.0083 20.3 6.9 56 46-106 12-69 (81)
218 KOG2424 Protein involved in tr 20.6 28 0.00061 32.1 -0.4 17 37-53 45-61 (195)
No 1
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.85 E-value=6.5e-20 Score=166.76 Aligned_cols=89 Identities=33% Similarity=0.483 Sum_probs=83.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+.+.+..+.|-|.||.+.|+.++|..+|++||.|.+|.|+.|+.|+.++|||||.|.+..||++|+++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++|+-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999986543
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.8e-19 Score=160.27 Aligned_cols=79 Identities=35% Similarity=0.582 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
+..++|||+||+..+++.||+.+|.+||+|..|+|..++ .|||||||++..||++|+..|||..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457999999999999999999999999999999998874 899999999999999999999999999999999999
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
+...
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 8653
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=4.5e-18 Score=150.07 Aligned_cols=86 Identities=35% Similarity=0.483 Sum_probs=81.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+||++.++|++|+++|.+||+|+.|.|+.+..|++++|||||+|.+.++|++||+.||+.+|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016540 120 ARRRRG 125 (387)
Q Consensus 120 Ak~~~~ 125 (387)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986543
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=6.2e-17 Score=154.25 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=92.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
...++-+||||+-|+.+|+|..|+..|.+||+|+.|.||.++.||+++|||||+|+++.++++|.+..+|.+|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCCCCCCCCcc
Q 016540 118 ERARRRRGRTPTPGRYLGLRTI 139 (387)
Q Consensus 118 ~~Ak~~~~r~~~~~~~~g~~~~ 139 (387)
.+......+.+.|..-+|+-+.
T Consensus 176 DvERgRTvkgW~PRRLGGGLGg 197 (335)
T KOG0113|consen 176 DVERGRTVKGWLPRRLGGGLGG 197 (335)
T ss_pred EecccccccccccccccCCcCC
Confidence 9998887777777665554433
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=4.9e-16 Score=154.15 Aligned_cols=84 Identities=29% Similarity=0.455 Sum_probs=79.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
..+.+|||+|||+.+++++|.++|.+||.|..|.|+.|..|+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8764
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=6.5e-16 Score=154.44 Aligned_cols=86 Identities=30% Similarity=0.416 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......++|||+|||+++||++|+++|.+||+|+.|+|+.|+.|++++|||||+|.++++|++||+.||+.+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998754
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.64 E-value=8.3e-16 Score=152.50 Aligned_cols=83 Identities=30% Similarity=0.454 Sum_probs=79.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+.++|||+|||..++|++|+++|.+||+|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|+.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.8e-15 Score=114.70 Aligned_cols=70 Identities=30% Similarity=0.605 Sum_probs=66.8
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 46 LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
|||+|||.++++++|+++|.+||.|..+.+..+ .++..+++|||+|.+.++|+.|++.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6788899999999999999999999999999999885
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=1.5e-14 Score=148.77 Aligned_cols=83 Identities=29% Similarity=0.461 Sum_probs=77.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
+....+|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||. |+|..|.|.+|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999998 999999999999998
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7643
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.5e-15 Score=137.25 Aligned_cols=83 Identities=30% Similarity=0.404 Sum_probs=80.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
...++|-|.||+.+++|++|+++|.+||.|..|.|+.|+.||.++|||||.|.+.++|++||+.|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 016540 121 RRR 123 (387)
Q Consensus 121 k~~ 123 (387)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.3e-14 Score=145.08 Aligned_cols=84 Identities=32% Similarity=0.486 Sum_probs=78.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG--RIITVE 118 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V~ 118 (387)
...++|||+|||..++|++|+++|.+||+|+.|.|+.++.|++++|||||+|++.++|++||+.||+..|.+ ++|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999999876 689999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
+|+...
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 998653
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.5e-15 Score=124.88 Aligned_cols=83 Identities=20% Similarity=0.387 Sum_probs=78.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+||++.|+|++|.++|.++|+|..|.|-.|+.+..+.|||||+|...++|+.||+.++|+.|+.++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34579999999999999999999999999999999999999988999999999999999999999999999999999998
Q ss_pred ccc
Q 016540 120 ARR 122 (387)
Q Consensus 120 Ak~ 122 (387)
.-.
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 753
No 13
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.3e-14 Score=130.40 Aligned_cols=81 Identities=26% Similarity=0.390 Sum_probs=73.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||.++.+.+|+++|.+||.|.+|.|...+ ....||||+|++..||+.||..-+|..++|..|.|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46899999999999999999999999999999884433 246899999999999999999999999999999999998
Q ss_pred cCCC
Q 016540 122 RRRG 125 (387)
Q Consensus 122 ~~~~ 125 (387)
....
T Consensus 82 ggr~ 85 (241)
T KOG0105|consen 82 GGRS 85 (241)
T ss_pred CCCc
Confidence 7653
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=7.3e-15 Score=136.40 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=75.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
..-++||||||+|+++.++|..+|++||+|+++.|+.|+.||+++||+||+|.+.+.|+.|++. ..-.|+|++..|++|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3467999999999999999999999999999999999999999999999999999999999995 447899999999998
Q ss_pred cc
Q 016540 121 RR 122 (387)
Q Consensus 121 k~ 122 (387)
--
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 75
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=5.3e-14 Score=107.69 Aligned_cols=70 Identities=31% Similarity=0.609 Sum_probs=65.0
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 46 LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
|||+|||+.+++++|.++|..||.|..+.+..++. +..+++|||+|.++++|+.|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.51 E-value=1.2e-13 Score=143.78 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=79.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
|...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 9754
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=1.8e-13 Score=144.72 Aligned_cols=83 Identities=20% Similarity=0.450 Sum_probs=79.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+||+.++++++|+++|+.||+|+.|.|+.++.++..+|||||+|.+.++|++||+.||+.+|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
...
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 643
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=130.96 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=71.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
.++|||+||++.+++++|++||+.||+|..|.|+.+.. .+|||||+|.++++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998864 46899999999999999996 999999999999999864
Q ss_pred C
Q 016540 123 R 123 (387)
Q Consensus 123 ~ 123 (387)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.4e-13 Score=141.61 Aligned_cols=80 Identities=38% Similarity=0.520 Sum_probs=77.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999873
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.3e-13 Score=101.57 Aligned_cols=72 Identities=33% Similarity=0.612 Sum_probs=67.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+|||+|||..+++++|+++|.+||+|..+.+..++ +.+.++|||+|.+.++|+.|++.|++..|.|..|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 6678999999999999999999999999999998873
No 21
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.4e-14 Score=120.69 Aligned_cols=87 Identities=25% Similarity=0.430 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.-...+-.|||+++...+||++|.+.|..||+|+.|.|..|..||..+|||+|+|++.++|++||..|||..|.|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 33455779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
.|+..+.
T Consensus 147 Dw~Fv~g 153 (170)
T KOG0130|consen 147 DWCFVKG 153 (170)
T ss_pred EEEEecC
Confidence 9998653
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.1e-13 Score=133.72 Aligned_cols=84 Identities=36% Similarity=0.570 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
+.....++|+|.|||+...+.||..+|++||+|.+|.|+.+. .| +|||+||+|++.+||++|-++|||..|.|++|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CC-CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344556899999999999999999999999999999999875 23 7999999999999999999999999999999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
..|+.+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999865
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.47 E-value=1.3e-13 Score=145.81 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=77.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+||++.+++++|+++|.+||+|..|.|+.|+.|++++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cc
Q 016540 120 AR 121 (387)
Q Consensus 120 Ak 121 (387)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6.2e-15 Score=132.11 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=76.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
...-|||||||+++||.||..+|++||+|++|.|+.|+.||+++||||+.|++.....-|+..|||..|.|+.|.|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998764
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.8e-13 Score=137.83 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=73.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATV--EEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~--edA~~Al~~LnG~~i~Gr~I~ 116 (387)
....+.+||||||++.++++||..+|..||.|..|.|+ ..|| +|||||+|.+. .++++||..|||.+++|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 34567899999999999999999999999999999998 5567 99999999987 789999999999999999999
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
|+.|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999984
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.45 E-value=3.5e-13 Score=142.56 Aligned_cols=79 Identities=30% Similarity=0.534 Sum_probs=75.9
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
.+|||+|||.++||++|.++|.+||+|..|.|+.|..|++++|||||+|.+.++|++||+.||+..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999863
No 27
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.9e-13 Score=98.85 Aligned_cols=71 Identities=37% Similarity=0.600 Sum_probs=67.0
Q ss_pred EecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 48 VTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 48 VgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
|+|||..+++++|+++|.+||.|..+.+..++.++.++++|||+|.+.++|+.|++.|++..|+|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788899999999999999999999999999999998873
No 28
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=5.9e-13 Score=123.00 Aligned_cols=80 Identities=38% Similarity=0.552 Sum_probs=77.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
.++|||+|||..+++++|.++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999764
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.43 E-value=5.8e-13 Score=140.90 Aligned_cols=84 Identities=32% Similarity=0.565 Sum_probs=79.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+||+..+++++|+++|.+||+|+.|.|+.+ .+|.++|||||+|.+.++|++||..|||..|+|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 446789999999999999999999999999999999998 6889999999999999999999999999999999999999
Q ss_pred cccCC
Q 016540 120 ARRRR 124 (387)
Q Consensus 120 Ak~~~ 124 (387)
|..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98654
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.42 E-value=5e-13 Score=140.99 Aligned_cols=80 Identities=26% Similarity=0.525 Sum_probs=72.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE-GRIITVE 118 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~-Gr~I~V~ 118 (387)
....++|||+|||.+++|++|.++|.+||+|.+|.|++| .+|.++|||||+|.+.++|++||+.||+.+|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445799999999999999999999999999999999999 78999999999999999999999999999885 6766665
Q ss_pred Ec
Q 016540 119 RA 120 (387)
Q Consensus 119 ~A 120 (387)
++
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 44
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=123.37 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.+.+|||+||++.+|+++|++||+.||+|.+|.|+.+.. ..+||||+|.++++|+.||. |+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 468999999999999999999999999999999998854 35799999999999999996 99999999999998765
Q ss_pred c
Q 016540 122 R 122 (387)
Q Consensus 122 ~ 122 (387)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 32
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.5e-13 Score=126.42 Aligned_cols=86 Identities=33% Similarity=0.531 Sum_probs=81.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.....+||||+|..+++|.-|...|-.||.|++|.|+.|..+++.+|||||+|...+||.+||..||+.+|.|+.|.|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016540 120 ARRRRG 125 (387)
Q Consensus 120 Ak~~~~ 125 (387)
|++.+-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 997653
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=2.4e-12 Score=96.46 Aligned_cols=74 Identities=36% Similarity=0.588 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
+|+|+|||..+++++|.++|..||.|..+.+..++.+ ...++|||+|.+.++|+.|++.+++..++|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887655 5689999999999999999999999999999999864
No 34
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.2e-13 Score=130.65 Aligned_cols=87 Identities=25% Similarity=0.438 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.+..+|.+.|||+.|++.||.+||+-+|+.||+|+.|.|+.|..||.+..||||||++.++|++|+-+|++..|+.+.|+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|.|++.-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998743
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.4e-13 Score=125.59 Aligned_cols=88 Identities=31% Similarity=0.499 Sum_probs=82.1
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.........|||+.|..+++-++|++.|.+||+|.+++|++|..|++++||+||.|-+.++|+.||..|||..|+++.|.
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 33344477899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
..||..+.
T Consensus 136 TNWATRKp 143 (321)
T KOG0148|consen 136 TNWATRKP 143 (321)
T ss_pred ccccccCc
Confidence 99998764
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=3.9e-13 Score=120.66 Aligned_cols=83 Identities=34% Similarity=0.544 Sum_probs=79.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+.+...+|||+||+..++++.|.++|-+.|+|+.+.|+.|+.|...+|||||||.++++|+-||+.||...|-|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 987
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.7e-12 Score=129.70 Aligned_cols=82 Identities=29% Similarity=0.540 Sum_probs=77.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE-GRIITVE 118 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~-Gr~I~V~ 118 (387)
..-+|-||||.||.++.|++|..+|++.|+|-++.|++|+.+|.++|||||+|.+.++|++||+.||+++|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 366899999999999999999999999999999999999999999999999999999999999999999985 8888877
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
.+.
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 664
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.37 E-value=3.2e-12 Score=133.26 Aligned_cols=79 Identities=23% Similarity=0.355 Sum_probs=73.4
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 40 ENPGNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 40 ~~~~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
..++++|||+||++ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|+.||+.|||..|.|++|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45778999999998 69999999999999999999998874 7999999999999999999999999999999999
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98754
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=3.7e-12 Score=134.47 Aligned_cols=76 Identities=32% Similarity=0.406 Sum_probs=70.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhc--CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAE--GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~--G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
....+|||+||++.+++++|+++|.+| |+|+.|.++ ++||||+|++.++|++||+.||+.+|+|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 999999874 4699999999999999999999999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
|+++..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 998754
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=5e-12 Score=104.15 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=76.7
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..-+++.+.-|||.|||+.+|.+++.++|.+||.|..|.|-..+.| +|-|||.|++..+|++|++.|+|..++++.|
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 3445667789999999999999999999999999999999777655 7999999999999999999999999999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|-+.++.
T Consensus 88 ~vlyyq~~ 95 (124)
T KOG0114|consen 88 VVLYYQPE 95 (124)
T ss_pred EEEecCHH
Confidence 99887754
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2.1e-12 Score=131.93 Aligned_cols=82 Identities=28% Similarity=0.494 Sum_probs=79.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
+.|||||||+++++++|.++|...|.|..++++.|+.||+.+||||++|.+.++|+.|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 016540 124 RG 125 (387)
Q Consensus 124 ~~ 125 (387)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=4.3e-12 Score=119.46 Aligned_cols=88 Identities=31% Similarity=0.463 Sum_probs=83.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
+.++..+.|+|.-||..+|++||+.+|...|+|+.|+++.|+.+|.+.||+||.|-+++||++||..|||..|..+.|+|
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 34667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
.+|.+...
T Consensus 116 SyARPSs~ 123 (360)
T KOG0145|consen 116 SYARPSSD 123 (360)
T ss_pred EeccCChh
Confidence 99987643
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.3e-12 Score=118.93 Aligned_cols=82 Identities=18% Similarity=0.426 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......|+||||||+..++|++|++.|..||.|.+|.|.++ +|||||.|++.|.|..||..||+.+|.|..++|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 34567899999999999999999999999999999999987 699999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
.|-+....
T Consensus 233 sWGKe~~~ 240 (321)
T KOG0148|consen 233 SWGKEGDD 240 (321)
T ss_pred eccccCCC
Confidence 99986543
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.30 E-value=1.1e-11 Score=129.31 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=69.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL--DRSVLEGRIITVER 119 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L--nG~~i~Gr~I~V~~ 119 (387)
+..+|||+|||+.+++++|.++|++||+|..|.|+.+ ++||||+|++.++|++||+.| ++..|.|++|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3579999999999999999999999999999998854 689999999999999999974 78899999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
++.+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 9754
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.2e-11 Score=126.12 Aligned_cols=85 Identities=21% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+...|+|.|||+.|...+|+.+|+.||.|.+|.|+..+.++.+ |||||+|.+..+|..||+.||+.+|+|++|-|.|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 445789999999999999999999999999999999977766654 9999999999999999999999999999999999
Q ss_pred cccCCC
Q 016540 120 ARRRRG 125 (387)
Q Consensus 120 Ak~~~~ 125 (387)
|-.+..
T Consensus 193 AV~Kd~ 198 (678)
T KOG0127|consen 193 AVDKDT 198 (678)
T ss_pred eccccc
Confidence 987754
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=6.5e-12 Score=119.88 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=69.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
..+|||+|||.++++++|+.+|++||+|++|+|++ .||||..++...|+.||..|+|.+|+|..|+|+-++.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 35899999999999999999999999999999975 4999999999999999999999999999999999987
Q ss_pred C
Q 016540 123 R 123 (387)
Q Consensus 123 ~ 123 (387)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.9e-11 Score=113.91 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
...+.+|||-||.+++.|.-|+++|.+||.|..|+|++|..|.+.+||+||.+.+.++|..||..|||..+.++.|.|.|
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.9e-11 Score=124.75 Aligned_cols=88 Identities=32% Similarity=0.473 Sum_probs=80.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-cee
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL-----DR-SVL 110 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L-----nG-~~i 110 (387)
+++...+.+|||.|||+++|+++|.++|.+||+|.++.|+.++.|+.++|.|||.|.+..+|++||... .| ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 455666799999999999999999999999999999999999999999999999999999999999966 34 678
Q ss_pred CCeEEEEEEcccCC
Q 016540 111 EGRIITVERARRRR 124 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~~ 124 (387)
+|+.|.|..|-.+.
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999997553
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=3.1e-11 Score=93.28 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=55.9
Q ss_pred HHHHHHHhh----hcCCeEEEE-EeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 57 KRELEKHFA----AEGKVIDVH-LVVDPWT--RESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 57 e~dL~~~F~----k~G~I~~v~-i~~d~~t--g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
+++|+++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999995 7777766 889999999999999999999999999999999986
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=8.4e-12 Score=117.91 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=82.1
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
..+++|+|||-.||.+..+.||..+|-.||.|+..+|..|..|..+++|+||.|+++..|++||..|||+.|+-+.|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
+..++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 988765
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=3e-11 Score=120.47 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=80.7
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCC--
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV-LEG-- 112 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~-i~G-- 112 (387)
.+.++....+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|++.+ |.|
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 44556677899999999999999999999999999999999999999999999999999999999999998864 544
Q ss_pred eEEEEEEcccCCCC
Q 016540 113 RIITVERARRRRGR 126 (387)
Q Consensus 113 r~I~V~~Ak~~~~r 126 (387)
.+|.|++|....++
T Consensus 107 ~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 107 HPVQVKYADGERER 120 (510)
T ss_pred cceeecccchhhhc
Confidence 68899998765443
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=5.1e-11 Score=87.74 Aligned_cols=56 Identities=36% Similarity=0.580 Sum_probs=50.8
Q ss_pred HHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 60 LEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 60 L~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|++.|||..|+|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987653 589999999999999999999999999999999986
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.3e-11 Score=122.93 Aligned_cols=85 Identities=29% Similarity=0.411 Sum_probs=76.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eC--CeEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV-LE--GRIITVE 118 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~-i~--Gr~I~V~ 118 (387)
...+|||+-|+..+||.||+++|.+||.|++|.|+++. .+.++|||||.|.+.+-|..||+.|||.. +. ..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999986 57799999999999999999999999974 44 4799999
Q ss_pred EcccCCCCC
Q 016540 119 RARRRRGRT 127 (387)
Q Consensus 119 ~Ak~~~~r~ 127 (387)
||..++++.
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 999887643
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.4e-11 Score=121.59 Aligned_cols=78 Identities=31% Similarity=0.362 Sum_probs=71.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.-..|||.||+.+|||+.|+++|.+||.|..|+.+.| ||||.|.+.++|.+|++.|||++|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3468999999999999999999999999999988644 99999999999999999999999999999999999
Q ss_pred cCCCCC
Q 016540 122 RRRGRT 127 (387)
Q Consensus 122 ~~~~r~ 127 (387)
+...+.
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 875543
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.19 E-value=8.8e-11 Score=117.24 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=73.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhh-hcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFA-AEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~-k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
...+||+|||+++.|++|+++|. +.|+|++|.|+.|. .|+.+|+|.|||+++|.+++|++.||.+++.|++|+|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999995 68999999999985 78899999999999999999999999999999999998775
Q ss_pred c
Q 016540 122 R 122 (387)
Q Consensus 122 ~ 122 (387)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.4e-11 Score=120.58 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=75.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
-.|.||||.|.+++.|+.|+..|..||.|+.|.+.+|+.|++.+|||||||+-+|.|+-|++.|||.+++|+.|+|..-
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999998743
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.15 E-value=4.7e-11 Score=122.18 Aligned_cols=83 Identities=36% Similarity=0.536 Sum_probs=77.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
.+...|||+||.+++++++|..+|+.||.|..|.+++|..||.++||+||+|.+.++|.+|++.|||.+|.|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34445999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccC
Q 016540 121 RRR 123 (387)
Q Consensus 121 k~~ 123 (387)
..+
T Consensus 356 ~~r 358 (549)
T KOG0147|consen 356 TER 358 (549)
T ss_pred eee
Confidence 654
No 58
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.10 E-value=2.3e-10 Score=119.32 Aligned_cols=72 Identities=25% Similarity=0.484 Sum_probs=59.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhc------------CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAE------------GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~------------G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
..+|||+|||+.+|+++|++||.+| +.|..+.+. ..+|||||+|.+.++|+.||. |||..|
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 5689999999999999999999975 233334432 347999999999999999995 999999
Q ss_pred CCeEEEEEEcc
Q 016540 111 EGRIITVERAR 121 (387)
Q Consensus 111 ~Gr~I~V~~Ak 121 (387)
.|..|+|....
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999986443
No 59
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=4.8e-10 Score=118.44 Aligned_cols=77 Identities=21% Similarity=0.450 Sum_probs=71.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
.+|||||+|+..++|+||..+|+.||+|..|.|+. ++++|||.+....+|++||.+|....|.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 47999999999999999999999999999998865 478999999999999999999999999999999999986
Q ss_pred CCC
Q 016540 123 RRG 125 (387)
Q Consensus 123 ~~~ 125 (387)
+..
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 543
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1.6e-10 Score=110.49 Aligned_cols=77 Identities=29% Similarity=0.475 Sum_probs=72.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
...++|+|+||.+.++.++|+..|++||.|.+|+|++ +|+||.|+-.++|..||..||+.+|+|+.|+|+++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4578999999999999999999999999999999974 59999999999999999999999999999999999
Q ss_pred ccCCC
Q 016540 121 RRRRG 125 (387)
Q Consensus 121 k~~~~ 125 (387)
+.+-.
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 87644
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.07 E-value=2.6e-10 Score=102.62 Aligned_cols=89 Identities=31% Similarity=0.498 Sum_probs=81.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDV-HLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v-~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
......+.+|||+||.+.+.|..|.++|+.||.|... .|+.+..||.+++||||.|++.+.+.+||..|||..++.++|
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 3445567899999999999999999999999998764 788999999999999999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 016540 116 TVERARRRRG 125 (387)
Q Consensus 116 ~V~~Ak~~~~ 125 (387)
.|.++..+..
T Consensus 170 tv~ya~k~~~ 179 (203)
T KOG0131|consen 170 TVSYAFKKDT 179 (203)
T ss_pred EEEEEEecCC
Confidence 9999987654
No 62
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=8.6e-10 Score=108.48 Aligned_cols=115 Identities=27% Similarity=0.389 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC
Q 016540 14 SPYNRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA 93 (387)
Q Consensus 14 sp~r~~~r~~s~~~srsr~r~~s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~ 93 (387)
.++.-.++.++....-++.-...........+|||++||.++++++|+++|.+||.|..+.++.|..+...+||+||+|.
T Consensus 68 ~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 68 RTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred cccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 35666788888877777666666666667889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEEcccCCCCCCC
Q 016540 94 TVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPT 129 (387)
Q Consensus 94 s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~~~r~~~ 129 (387)
+++.++.++. +.-+.|+|+.+.|..|.++......
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 9999999988 6888999999999999988654443
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=2.6e-09 Score=97.97 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhc-CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAE-GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~-G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
...+...-+||..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||||++++.|+-|-+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556688999999999999999999988 6777888889999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9988765
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.3e-09 Score=108.29 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=73.0
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccCCC
Q 016540 46 LYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRRRG 125 (387)
Q Consensus 46 LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~~~ 125 (387)
|||.||++.++..+|.++|..||+|+.|+|+.+.. | ++|| ||+|++++.|++||+.|||..+.|.+|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999864 4 8999 9999999999999999999999999999998887655
Q ss_pred C
Q 016540 126 R 126 (387)
Q Consensus 126 r 126 (387)
+
T Consensus 156 r 156 (369)
T KOG0123|consen 156 R 156 (369)
T ss_pred h
Confidence 4
No 65
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.92 E-value=1.1e-09 Score=107.82 Aligned_cols=83 Identities=37% Similarity=0.553 Sum_probs=77.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||++|+|.++|+.|.+.|.+||+|.+|.++.|+.++.++||+||+|++.+.+.++|. ..-+.|+|+.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999999888 45688999999999998
Q ss_pred cCCC
Q 016540 122 RRRG 125 (387)
Q Consensus 122 ~~~~ 125 (387)
+...
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7754
No 66
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.2e-09 Score=101.96 Aligned_cols=73 Identities=34% Similarity=0.602 Sum_probs=68.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
..|||++||+.+.+.+|+.||.+||+|.+|.| ..||+||+|.+..+|..||..||+.+|+|..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 57999999999999999999999999999988 3689999999999999999999999999999999999865
Q ss_pred C
Q 016540 124 R 124 (387)
Q Consensus 124 ~ 124 (387)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.92 E-value=3.1e-09 Score=109.06 Aligned_cols=82 Identities=40% Similarity=0.708 Sum_probs=76.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
-+.+|||.+|...|...||+.||.+||+|+-.+|+.+..+.-.++|+||++.+.++|.+||+.|+.++|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35799999999999999999999999999999999987776678999999999999999999999999999999999998
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 43
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3.7e-09 Score=111.15 Aligned_cols=80 Identities=29% Similarity=0.463 Sum_probs=71.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTR---ESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg---~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
..++|||.||++.+|.++|+.+|.++|.|..|.|.+.+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999887655321 234999999999999999999999999999999999
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 998
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.89 E-value=3.3e-09 Score=106.15 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=69.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.+....|+|||.|||+++||+.|++-|..||.|.+++|+. .|+.+| .|.|.++++|+.|+..|+|..|+|+.|+|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 4455678999999999999999999999999999999943 355555 99999999999999999999999999999
Q ss_pred EEc
Q 016540 118 ERA 120 (387)
Q Consensus 118 ~~A 120 (387)
.++
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 874
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.87 E-value=6.7e-09 Score=96.45 Aligned_cols=81 Identities=28% Similarity=0.509 Sum_probs=72.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHH----HhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEK----HFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~----~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
++..||||.||+..+..++|+. +|++||+|.+|.+.. |.+.+|-|||.|.+.+.|-.|+..|+|..+-|+.|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999998877 999999999988754 456789999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++|+.+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998763
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.4e-09 Score=103.31 Aligned_cols=81 Identities=21% Similarity=0.468 Sum_probs=76.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.-+.|||..+.++.+|+||+.+|+.||+|++|.+..++.++..+||+||||.+......||..||-+.|+|+-|.|-.+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred c
Q 016540 122 R 122 (387)
Q Consensus 122 ~ 122 (387)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 3
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.2e-08 Score=97.05 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=76.2
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.+...++|+|.||+..|+++||+++|..||+++.+.|.+++ .|.+.|.|-|.|...+||++||+.|+|..++|..|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34445889999999999999999999999999999888886 78899999999999999999999999999999999998
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
+....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 87654
No 73
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=99.73 Aligned_cols=79 Identities=22% Similarity=0.474 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL-DRSVLEGRIIT 116 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L-nG~~i~Gr~I~ 116 (387)
..+..-++|||++|...++|.+|.++|.+||+|..|.++.. +++|||+|.+.+.|+.|.+++ +...|+|..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34455679999999999999999999999999999988765 579999999999999876654 55678999999
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 74
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=3.1e-08 Score=101.02 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=72.5
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..++.....+|||.|||.++++.+|+++|.+||.|+...|....-.++..+||||+|.+.+.++.||++ +-..|++++|
T Consensus 281 ~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl 359 (419)
T KOG0116|consen 281 NQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKL 359 (419)
T ss_pred CcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeE
Confidence 344455566799999999999999999999999999887655432344449999999999999999995 5788999999
Q ss_pred EEEEcccCC
Q 016540 116 TVERARRRR 124 (387)
Q Consensus 116 ~V~~Ak~~~ 124 (387)
.|+..+..-
T Consensus 360 ~Veek~~~~ 368 (419)
T KOG0116|consen 360 NVEEKRPGF 368 (419)
T ss_pred EEEeccccc
Confidence 999887653
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=5.1e-09 Score=110.06 Aligned_cols=82 Identities=33% Similarity=0.449 Sum_probs=76.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.+++|+|.|||+..+..+|+.+|..||.|..|.|+.....+...|||||+|-++.+|.+|++.|..+.|.|+.|.++||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 37899999999999999999999999999999998876667779999999999999999999999999999999999998
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
..
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 54
No 76
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1e-08 Score=97.24 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCC--eEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV-LEG--RIITVE 118 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~-i~G--r~I~V~ 118 (387)
...+||||-|...-.|+|+..+|..||+|.+|.+...+ .|.++|+|||.|.+..+|++||..|+|.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 46799999999999999999999999999999998876 57789999999999999999999999975 334 578999
Q ss_pred EcccCCC
Q 016540 119 RARRRRG 125 (387)
Q Consensus 119 ~Ak~~~~ 125 (387)
|+...++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9986554
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.72 E-value=1.6e-08 Score=95.99 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
..+.....|||+|+.+.+|.++|+.+|+.||.|..+.|++++.++.++|||||+|.+.+.++.||. ||+..|.|..|+|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345667899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 988765
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.5e-08 Score=99.78 Aligned_cols=74 Identities=28% Similarity=0.553 Sum_probs=70.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
..|||| +++|+..|.++|..+|+|+.|.|+.|. | +.|||||.|.++++|+.||+.||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 8999999999999999999999999999999999999754
No 79
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.65 E-value=1.9e-07 Score=77.05 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=72.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhh--cCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 016540 44 NNLYVTGLSPRITKRELEKHFAA--EGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE----GRIITV 117 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k--~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~----Gr~I~V 117 (387)
+||.|.|||...+.++|.+++.. .|....+.|+.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988865 378888999999999999999999999999999999999999876 567788
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
.+|+.+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888765
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=9.6e-08 Score=93.51 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=74.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeE--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVI--------DVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~--------~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
...++.|||.|||.++|.+++.++|.+||.|. .|+|..+. .|..+|-|+|.|...+.++-||+.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34567799999999999999999999999876 36676665 4899999999999999999999999999999
Q ss_pred CeEEEEEEcccCC
Q 016540 112 GRIITVERARRRR 124 (387)
Q Consensus 112 Gr~I~V~~Ak~~~ 124 (387)
|..|.|+.|+-..
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999998553
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.61 E-value=2e-07 Score=86.69 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=69.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---CeE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVV-DPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE---GRI 114 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~-d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~---Gr~ 114 (387)
+...-+||||.+||.++...+|..+|..|-..+.+.|-. ++.....+-+|||+|.+..+|++|++.|||..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 344568999999999999999999999986555554432 2222233579999999999999999999999997 789
Q ss_pred EEEEEcccCC
Q 016540 115 ITVERARRRR 124 (387)
Q Consensus 115 I~V~~Ak~~~ 124 (387)
|+|++|+...
T Consensus 110 LhiElAKSNt 119 (284)
T KOG1457|consen 110 LHIELAKSNT 119 (284)
T ss_pred eEeeehhcCc
Confidence 9999998653
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=2e-08 Score=92.99 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+.+...||||+||...++|+-|.++|-+.|+|..|.|..+++. +.+ ||||+|.++..+.-|++.|||..+.+..|.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 3456789999999999999999999999999999999877644 344 99999999999999999999999999998888
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 765
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.55 E-value=1.9e-07 Score=98.28 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=74.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWT---RESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~t---g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
++.+++|||+||++.++++.|...|..||+|..|+|++.... .....++||.|.+..||++|++.|+|..|.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 667899999999999999999999999999999999876532 33467999999999999999999999999999999
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999963
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=9.6e-08 Score=98.42 Aligned_cols=72 Identities=26% Similarity=0.444 Sum_probs=65.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.-+..+|+|.|||..|++++|..+|+.||+|..|..-.. ..|.+||+|.+..+|+.|+++|++.+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455779999999999999999999999999999766444 478999999999999999999999999999887
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.46 E-value=2.1e-07 Score=91.71 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=78.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeE--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVI--------DVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~--------~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
.....+|||.+|+..+++++|.++|.+||.|+ .|+|-++++|+..++-|.|.|.+...|++||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999886 4778889999999999999999999999999999999999
Q ss_pred CeEEEEEEcccCC
Q 016540 112 GRIITVERARRRR 124 (387)
Q Consensus 112 Gr~I~V~~Ak~~~ 124 (387)
+..|+|.+|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999997654
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=2.8e-07 Score=86.19 Aligned_cols=72 Identities=35% Similarity=0.531 Sum_probs=64.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.+....+.|+|.||+..+.|++|.++|.+||++.+..+ ..+++||+|++.++|..||..|++..|.++.|.|
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 33556789999999999999999999999999965555 2679999999999999999999999999999999
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.34 E-value=5.3e-07 Score=85.26 Aligned_cols=83 Identities=16% Similarity=0.331 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.+...+||.+.|..+++.+.|-..|.+|-.....+++.++.||+++||+||-|.+.+|+..|+.+|||..++.+.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45568999999999999999999999998888889999999999999999999999999999999999999999998765
Q ss_pred ccc
Q 016540 120 ARR 122 (387)
Q Consensus 120 Ak~ 122 (387)
...
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 543
No 88
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.32 E-value=5e-08 Score=96.71 Aligned_cols=75 Identities=9% Similarity=0.012 Sum_probs=59.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
...+|+|++|+..+...++.++|..+|+|.+..+.-.. ..-+|.|+|........|+. ++|.++.-+...+.+.+
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 34689999999999999999999999999988775432 45688899999999999999 67877764444433333
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.32 E-value=1.8e-06 Score=88.15 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=65.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
...-|-+.+|||.+|++||.+||+.++ |..+.+. ..+|++.|-|||||++++|+++||+ .+...+..+-|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 345677789999999999999999984 6665444 4578999999999999999999999 68888888999988775
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
..
T Consensus 85 ~~ 86 (510)
T KOG4211|consen 85 GA 86 (510)
T ss_pred Cc
Confidence 43
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=6.1e-07 Score=92.97 Aligned_cols=89 Identities=26% Similarity=0.377 Sum_probs=82.5
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..........|||++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||+.+.+.+|
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 016540 116 TVERARRRR 124 (387)
Q Consensus 116 ~V~~Ak~~~ 124 (387)
.|+.|....
T Consensus 362 vvq~A~~g~ 370 (500)
T KOG0120|consen 362 VVQRAIVGA 370 (500)
T ss_pred Eeehhhccc
Confidence 999987553
No 91
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.27 E-value=2.1e-06 Score=85.46 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=58.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWT---RESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~t---g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
..|.|.||.+.+|.++++.+|...|+|.++.|+-+... ....-.|||.|.+...+..|.. |.++.|-+..|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 38999999999999999999999999999987653322 2334689999999999999988 55555555555443
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.16 E-value=1.1e-05 Score=80.69 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 43 GNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 43 ~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
++.|.|.||.. .+|.+.|..+|..||.|..|+|+.++ +.-|+|+|.+...|+-|++.|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 58899999955 58999999999999999999999886 4679999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 654
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=2.1e-05 Score=71.49 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=59.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
........|.|.+||+..+|+||++++.+.|.|++..+.+| |++.|+|...+|++-||.+|+...+.
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 33445789999999999999999999999999999998765 58999999999999999999988765
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.05 E-value=7.7e-06 Score=68.54 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=45.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEE
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS-----VLEGRIITV 117 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~-----~i~Gr~I~V 117 (387)
++.|+|.++...++.++|+++|.+||.|.+|++... ...|||-|.+.+.|+.|+.++... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 467899999999999999999999999999998654 347999999999999999877544 556666665
Q ss_pred EEc
Q 016540 118 ERA 120 (387)
Q Consensus 118 ~~A 120 (387)
+.-
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 543
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.01 E-value=4.2e-06 Score=86.35 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=76.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
-...+||+--|...++..+|++||..+|+|.+|.|+.|.+++.++|.|||+|.+.+.+..||. |.|.-+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 345688888899999999999999999999999999999999999999999999999999996 9999999999999877
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
...+
T Consensus 256 Eaek 259 (549)
T KOG0147|consen 256 EAEK 259 (549)
T ss_pred HHHH
Confidence 6543
No 96
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.00 E-value=2.2e-05 Score=73.26 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=69.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE-GRIITVE 118 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~-Gr~I~V~ 118 (387)
..+...||+.|||..++.+.|..+|.+|.....|.++... .+.|||+|.+...|..|...|++..|. ...|.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999999999999999999999999887654 689999999999999999999999887 8888888
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.99 E-value=2.5e-05 Score=62.52 Aligned_cols=71 Identities=27% Similarity=0.339 Sum_probs=48.9
Q ss_pred CEEEEecCCCCCCHHH----HHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 44 NNLYVTGLSPRITKRE----LEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 44 ~~LfVgnLp~~~te~d----L~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+.|||.|||.+..... |+.++..|| +|..| ..+.|+|.|.+.+.|+.|++.|+|..+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4799999999988754 567777775 66554 24689999999999999999999999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
|.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 986543
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.97 E-value=6.5e-06 Score=76.76 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=54.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
.+.+|||.||..+|+|++|+.+|..|-....++|... .| -..|||+|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 4579999999999999999999999976655555322 22 458999999999999999999998764
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.83 E-value=5.2e-05 Score=77.63 Aligned_cols=80 Identities=25% Similarity=0.314 Sum_probs=65.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVID-VHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~-v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.....|-+.+||+.||++||.+||+..-.|.. |.++.++ .+.+.|-|||+|++.+.|+.||. -|...|..+-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 35567889999999999999999998755544 4455554 56689999999999999999999 467788888898887
Q ss_pred ccc
Q 016540 120 ARR 122 (387)
Q Consensus 120 Ak~ 122 (387)
+..
T Consensus 179 Ss~ 181 (510)
T KOG4211|consen 179 SSR 181 (510)
T ss_pred hHH
Confidence 753
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7.1e-05 Score=77.68 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=68.2
Q ss_pred CCCCCCCEEEEecCCCCCCH------HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 38 DAENPGNNLYVTGLSPRITK------RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te------~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
.++.-...|+|.|+|..-.. .-|..+|+++|+|+.+.++.+..+| .+||.|++|++..+|+.|++.|||+.|+
T Consensus 53 ~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 53 TAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec
Confidence 44456689999999875332 3467889999999999999888777 8999999999999999999999999887
Q ss_pred -CeEEEEEEcc
Q 016540 112 -GRIITVERAR 121 (387)
Q Consensus 112 -Gr~I~V~~Ak 121 (387)
...+.|..-+
T Consensus 132 knHtf~v~~f~ 142 (698)
T KOG2314|consen 132 KNHTFFVRLFK 142 (698)
T ss_pred ccceEEeehhh
Confidence 5666665444
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.74 E-value=2.3e-05 Score=77.20 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcC--CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEG--KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G--~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...++|||||-|++|++||.+.+...| .|.+++++.+..+|.++|||+|...+....++.++.|...+|.|+.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 346899999999999999999988776 67778888899999999999999999999999999999999998755443
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.74 E-value=0.00027 Score=70.40 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCEEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 016540 34 SRSSDAENPGNNLYVTGLSPR-ITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG 112 (387)
Q Consensus 34 ~~s~~~~~~~~~LfVgnLp~~-~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G 112 (387)
..++....+++.+.|-+|... ++.+-|..+|..||.|..|++++.+ .|-|+||+.+....+.||..||+..+-|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 345566778999999999664 7778899999999999999998875 7899999999999999999999999999
Q ss_pred eEEEEEEcccC
Q 016540 113 RIITVERARRR 123 (387)
Q Consensus 113 r~I~V~~Ak~~ 123 (387)
.+|.|.+++..
T Consensus 353 ~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 353 GKLNVCVSKQN 363 (494)
T ss_pred ceEEEeecccc
Confidence 99999998754
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.74 E-value=1.6e-05 Score=77.81 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=75.2
Q ss_pred CCCCEEE-EecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 41 NPGNNLY-VTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 41 ~~~~~Lf-VgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.+..++| |++|++.+++++|+.+|..+|.|..+.++.+..++..+|||||+|.+...++.|+.. +...|.+..+.|++
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3344555 999999999999999999999999999999999999999999999999999999997 88899999999998
Q ss_pred cccCC
Q 016540 120 ARRRR 124 (387)
Q Consensus 120 Ak~~~ 124 (387)
..+..
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 87664
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.71 E-value=7.6e-05 Score=73.28 Aligned_cols=84 Identities=26% Similarity=0.463 Sum_probs=64.8
Q ss_pred CCCCCEEEEecCCCCCCHHH----H--HHHhhhcCCeEEEEEeeCCCCC-Cccc--EEEEEeCCHHHHHHHHHHhCCcee
Q 016540 40 ENPGNNLYVTGLSPRITKRE----L--EKHFAAEGKVIDVHLVVDPWTR-ESRG--FGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~d----L--~~~F~k~G~I~~v~i~~d~~tg-~srG--~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
....+-|||-+|++.+..++ | .++|.+||+|..|.|.+..-.. -..+ -.||+|...+||..||.+.+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34567899999998877666 2 6899999999888775432111 0112 249999999999999999999999
Q ss_pred CCeEEEEEEcccC
Q 016540 111 EGRIITVERARRR 123 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~ 123 (387)
+|+.|+..+-..+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999887643
No 105
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.64 E-value=2.2e-05 Score=74.53 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=62.2
Q ss_pred HHHHHHhh-hcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccCCCCCCCCCCCCCC
Q 016540 58 RELEKHFA-AEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRRRGRTPTPGRYLGL 136 (387)
Q Consensus 58 ~dL~~~F~-k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~~~r~~~~~~~~g~ 136 (387)
++|...|. +||+|++++|..+-. -...|.+||.|..+++|++|++.||+-.|.|++|.+++......+....+.+.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~ 161 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT 161 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc
Confidence 44555555 899999987765432 2347899999999999999999999999999999999998887776666665443
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.55 E-value=0.00022 Score=75.73 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCC-EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 42 PGN-NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 42 ~~~-~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
+++ .|-+.|+|++++-+||.+||..|-.+-.-.+++-.+.|+..|.|.|.|++.++|..|...|++..|..++|.|.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 677889999999999999999997665444445556799999999999999999999999999999999998865
No 107
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.49 E-value=0.00049 Score=67.97 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=61.8
Q ss_pred CCCEEEEecCC----CCCC-------HHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 42 PGNNLYVTGLS----PRIT-------KRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 42 ~~~~LfVgnLp----~~~t-------e~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
..++|+|.||= +..+ +++|.+-..+||.|..|.|.-.. +.|.+-|.|.+.++|..||+.|+|..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeee
Confidence 46789998882 1233 24566667899999999875433 689999999999999999999999999
Q ss_pred CCeEEEEEEccc
Q 016540 111 EGRIITVERARR 122 (387)
Q Consensus 111 ~Gr~I~V~~Ak~ 122 (387)
+|++|...+...
T Consensus 340 dgRql~A~i~DG 351 (382)
T KOG1548|consen 340 DGRQLTASIWDG 351 (382)
T ss_pred cceEEEEEEeCC
Confidence 999999876643
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00027 Score=51.87 Aligned_cols=52 Identities=19% Similarity=0.500 Sum_probs=42.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCI 102 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al 102 (387)
+.|-|.+.+....+. |..+|..||+|+.+.+.. ...+.||+|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578899999876654 555888999999988852 2568999999999999985
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.00069 Score=56.32 Aligned_cols=80 Identities=14% Similarity=0.311 Sum_probs=53.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEE-EeeCC------CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH-LVVDP------WTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~-i~~d~------~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
...+.|.|-+.|+. ....|.++|++||+|++.. +..+. ......++..|+|.+..+|++||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34677999999998 4567788899999998764 10000 000135789999999999999999 799999986
Q ss_pred E-EEEEEccc
Q 016540 114 I-ITVERARR 122 (387)
Q Consensus 114 ~-I~V~~Ak~ 122 (387)
. |-|.+.+.
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 4 45777643
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00059 Score=70.43 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=62.7
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhh-hcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFA-AEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~-k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~ 104 (387)
....++..|||||+||--++.++|..||. -||.|+++-|-.|++-+.++|-|=|+|.+...-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45567889999999999999999999998 699999999999988899999999999999999999884
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.33 E-value=0.00055 Score=71.40 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=52.0
Q ss_pred HHHHHhhhcCCeEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 59 ELEKHFAAEGKVIDVHLVVDPWT---RESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 59 dL~~~F~k~G~I~~v~i~~d~~t---g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
+|+..+.+||.|..|.|+.+..+ .-..|..||||++.++|+.|+++|+|.+|.|+.|.+.|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34455668999999999877222 23357899999999999999999999999999999887653
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.25 E-value=0.0004 Score=69.35 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcC-CeEE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEG-KVID--VHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~--v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+|-+.+||+..+.+||.+||..|. .|.. |.|+.+. .|.+.|-|||+|.+.++|.+|..+.+.+....+-|+|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 356889999999999999999999886 3444 6777764 68899999999999999999999999888888888887
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
-+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 664
No 113
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.23 E-value=0.00036 Score=70.58 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=59.7
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeC---CCC--CC--------cccEEEEEeCCHHHHHHHHH
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVD---PWT--RE--------SRGFGFVTMATVEEADRCIK 103 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d---~~t--g~--------srG~aFVeF~s~edA~~Al~ 103 (387)
++++.+..+|.+.|||.+-.-+.|.+||..||.|+.|.|+.. +.. +. .+-+|||||++.+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 455678899999999999888999999999999999999766 222 11 24689999999999999999
Q ss_pred HhCCc
Q 016540 104 YLDRS 108 (387)
Q Consensus 104 ~LnG~ 108 (387)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 77544
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.16 E-value=0.0008 Score=67.77 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=65.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR-IITVE 118 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr-~I~V~ 118 (387)
-++..+|.+.|+|..++|++|+.+|..-|..+.......+ .+.+|++.|++.|+|..|+..|+.+.+.+. .|.|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 3567799999999999999999999998876555443322 356999999999999999999999998765 88999
Q ss_pred Eccc
Q 016540 119 RARR 122 (387)
Q Consensus 119 ~Ak~ 122 (387)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9874
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.07 E-value=0.0024 Score=63.76 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=65.4
Q ss_pred CCCCCCCEEEEecC--CCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--e
Q 016540 38 DAENPGNNLYVTGL--SPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG--R 113 (387)
Q Consensus 38 ~~~~~~~~LfVgnL--p~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G--r 113 (387)
+...++..|.++=| -+-+|.+-|..+....|+|..|.|++. + ---|.|||++.+.|++|.+.|||..|.. -
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccce
Confidence 34445556665544 445888999999999999999988764 2 3469999999999999999999998763 5
Q ss_pred EEEEEEcccCC
Q 016540 114 IITVERARRRR 124 (387)
Q Consensus 114 ~I~V~~Ak~~~ 124 (387)
.|+|++|++.+
T Consensus 190 TLKIeyAkP~r 200 (494)
T KOG1456|consen 190 TLKIEYAKPTR 200 (494)
T ss_pred eEEEEecCcce
Confidence 89999999764
No 116
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.01 E-value=0.00057 Score=65.09 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=60.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWT--------RESR----GFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~t--------g~sr----G~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
.-.||+++||+.+...-|.++|..||+|-.|.|.....+ |.+. --|+|||.+...|+.+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999988765444 2222 2467999999999999999999999
Q ss_pred CCeE
Q 016540 111 EGRI 114 (387)
Q Consensus 111 ~Gr~ 114 (387)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0022 Score=66.39 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=50.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCC---CCCCccc---EEEEEeCCHHHHHHHHHHhC
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDP---WTRESRG---FGFVTMATVEEADRCIKYLD 106 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~---~tg~srG---~aFVeF~s~edA~~Al~~Ln 106 (387)
..-.++||||+||++++|++|...|..||.|. |+++... .--.++| |+|+.|+++..+++.|.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34467999999999999999999999999875 3444211 1123456 99999999999988877654
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.92 E-value=0.0055 Score=54.15 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=52.4
Q ss_pred CCCCEEEEecCCC------CCCH---HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 41 NPGNNLYVTGLSP------RITK---RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 41 ~~~~~LfVgnLp~------~~te---~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
++..||.|.=+.+ ...+ .+|.+.|..||+|.-|.++. +.-+|+|.+-+.|.+|+. |+|.+|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEEC
Confidence 4455676665541 2222 36778889999998888764 357999999999999999 9999999
Q ss_pred CeEEEEEEcccCC
Q 016540 112 GRIITVERARRRR 124 (387)
Q Consensus 112 Gr~I~V~~Ak~~~ 124 (387)
|+.|+|....+..
T Consensus 96 g~~l~i~LKtpdW 108 (146)
T PF08952_consen 96 GRTLKIRLKTPDW 108 (146)
T ss_dssp TEEEEEEE-----
T ss_pred CEEEEEEeCCccH
Confidence 9999999887653
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.88 E-value=0.003 Score=61.37 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=52.8
Q ss_pred HHHHHHhhhcCCeEEEEEeeCCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 58 RELEKHFAAEGKVIDVHLVVDPWTRES-RGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 58 ~dL~~~F~k~G~I~~v~i~~d~~tg~s-rG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
+++++.+++||+|..|.|+..+..-.. .--.||+|+..++|.+|+-.|||..|+|+.+...|..-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 467788899999999988877533222 23479999999999999999999999999998777653
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.72 E-value=0.0021 Score=68.46 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEeeCCCCCCcccEEEEEeCCH
Q 016540 17 NRYGRSMSRSMSRSRSRSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVID-VHLVVDPWTRESRGFGFVTMATV 95 (387)
Q Consensus 17 r~~~r~~s~~~srsr~r~~s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~-v~i~~d~~tg~srG~aFVeF~s~ 95 (387)
...+++....++........+-+...+..|||..||..+++.++.++|.+.-.|++ |.|...+ +++-.+.|||+|..+
T Consensus 408 ~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 408 NNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHP 486 (944)
T ss_pred ccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccc
Confidence 34455556666666666666677788999999999999999999999998777776 6665544 566788999999998
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 96 EEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 96 edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
+++..|+..-..+.++.+.|.|.-.
T Consensus 487 ~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 487 TAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cccchhhhcccccccCceEEEeech
Confidence 8888887756666677778888644
No 121
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.67 E-value=0.0019 Score=67.71 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=66.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhh-hcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CC
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFA-AEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL---EG 112 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~-k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i---~G 112 (387)
+......+.|||.||-.-+|..+|+.++. .+|.|..++ +|+ .+..|||.|.+.++|.+.+.+|||..+ +.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHH--HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 33456788999999988889999999998 566776663 343 477899999999999999999999876 46
Q ss_pred eEEEEEEcccC
Q 016540 113 RIITVERARRR 123 (387)
Q Consensus 113 r~I~V~~Ak~~ 123 (387)
+.|.|.|+...
T Consensus 512 K~L~adf~~~d 522 (718)
T KOG2416|consen 512 KHLIADFVRAD 522 (718)
T ss_pred ceeEeeecchh
Confidence 78888888643
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.38 E-value=0.0031 Score=68.94 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=69.2
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG--RIIT 116 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G--r~I~ 116 (387)
...+.+.+||++|..++....|..+|..||.|..|.+-. ..-||+|.|++...|++|++.|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678999999999999999999999999999987732 25699999999999999999999999986 6799
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|.||...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998754
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.36 E-value=0.0018 Score=70.30 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
...|||.|+|+..|.++|+.+|.++|.++.+.++..+ .|+++|.|||.|.++.++..++..++...+.-..+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4679999999999999999999999999998876654 688999999999999999999999998888888888888665
Q ss_pred C
Q 016540 123 R 123 (387)
Q Consensus 123 ~ 123 (387)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.34 E-value=0.0082 Score=60.26 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=50.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhhc----CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 45 NLYVTGLSPRITKRELEKHFAAE----GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~----G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.|-+.+||+++++.|+.+||..- |.++.|.++.. .+|+..|-|||.|+.+++|+.||.+ |...|+-+-|+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 44457999999999999999632 23344544443 3677899999999999999999985 44444444343
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.00 E-value=0.0058 Score=61.99 Aligned_cols=73 Identities=30% Similarity=0.490 Sum_probs=58.9
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhc--CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEc
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAE--GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS-VLEGRIITVERA 120 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~--G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~-~i~Gr~I~V~~A 120 (387)
+++||+||.+.++..||+.+|... +--..+ |+ ..|||||.+.+...|..|++.|+|. ++.|..+.|+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 579999999999999999999754 111122 22 3689999999999999999999997 688999999988
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
-++.
T Consensus 74 v~kk 77 (584)
T KOG2193|consen 74 VPKK 77 (584)
T ss_pred hhHH
Confidence 6553
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=0.01 Score=62.05 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=55.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhh-hcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEEE
Q 016540 44 NNLYVTGLSPRITKRELEKHFA-AEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE----GRIITVE 118 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~-k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~----Gr~I~V~ 118 (387)
+++.|.|++...|...|.+.-+ ..|.-..+.++.|..+.++.|||||.|.+.+++..+.+++||+.++ .+.+.|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3444444444433333322221 1455566788888888889999999999999999999999998643 3455778
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
||..+
T Consensus 469 YArIQ 473 (549)
T KOG4660|consen 469 YARIQ 473 (549)
T ss_pred hhhhh
Confidence 88754
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.89 E-value=0.018 Score=52.58 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhh-cCCe---EEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAA-EGKV---IDVHLVVDPWT--RESRGFGFVTMATVEEADRCIKYLDRSVLEG- 112 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k-~G~I---~~v~i~~d~~t--g~srG~aFVeF~s~edA~~Al~~LnG~~i~G- 112 (387)
+...++|.|.+||+.+||+++.+.+.. ++.. .++.-...... .....-|||.|.+.+++...+..++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999887766 5554 33331122111 1224678999999999999999999987642
Q ss_pred ----eEEEEEEcccC
Q 016540 113 ----RIITVERARRR 123 (387)
Q Consensus 113 ----r~I~V~~Ak~~ 123 (387)
....|++|.-+
T Consensus 84 kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQ 98 (176)
T ss_dssp TS-EEEEEEEE-SS-
T ss_pred CCCCcceeEEEcchh
Confidence 35577887643
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.88 E-value=0.049 Score=41.36 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhc---CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAE---GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~---G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L 105 (387)
..+|+|.|+.. ++.+||+.+|..| .....|.++.|. -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46899999965 7778999999988 235577777664 5889999999999999865
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.86 E-value=0.00047 Score=74.75 Aligned_cols=69 Identities=22% Similarity=0.456 Sum_probs=59.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
-+++||.||+..+.+.+|...|..+|.|..+.+.....++..+|+|||+|...+++.+||...+++.+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 357899999999999999999999998888777655667888999999999999999999966655554
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.70 E-value=0.0034 Score=62.02 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCCCCCHHHH---HHHhhhcCCeEEEEEeeCCC--CC-CcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 41 NPGNNLYVTGLSPRITKREL---EKHFAAEGKVIDVHLVVDPW--TR-ESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL---~~~F~k~G~I~~v~i~~d~~--tg-~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
....-+||-+|+..+..+++ .+.|.+||.|..|.+..+.. .+ ....-++|+|...++|..||...+|+.++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34467889999887665544 46789999999988877652 11 11234799999999999999999999999999
Q ss_pred EEEEEcccC
Q 016540 115 ITVERARRR 123 (387)
Q Consensus 115 I~V~~Ak~~ 123 (387)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776644
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=0.059 Score=52.75 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE-EEEEcc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII-TVERAR 121 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I-~V~~Ak 121 (387)
.+.|-|-++++... .-|..+|.+||+|++..... +-.|-+|.|.+..+|++||. .||+.|+|..| -|+-+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 56777778887643 56778899999998766542 35689999999999999999 69999998754 455433
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.24 E-value=0.02 Score=54.77 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=60.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeEEEEEE
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS----VLEGRIITVER 119 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~----~i~Gr~I~V~~ 119 (387)
..|||.||...++-+.|+..|..||+|....++.|. .++..+-++|+|...-.|.+|+..+.-. ++.+.+.-|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 689999999999999999999999999876665553 5677889999999999999999977432 23345555543
Q ss_pred c
Q 016540 120 A 120 (387)
Q Consensus 120 A 120 (387)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.22 E-value=0.078 Score=46.82 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCCCCCCEEEEecCCCCCCH-HH---HHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 38 DAENPGNNLYVTGLSPRITK-RE---LEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te-~d---L~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
.-+++..+|.|.=|..++.. +| |...++.||+|..|.+. .+.-|.|.|.+...|-.|+.+++. ...|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 34667788888766555442 34 45556789999999874 256799999999999999999876 55677
Q ss_pred EEEEEEcc
Q 016540 114 IITVERAR 121 (387)
Q Consensus 114 ~I~V~~Ak 121 (387)
.+.+.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 77777654
No 134
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.20 E-value=0.015 Score=59.70 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCCCCCCCEEEEecCCCCCC-HHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 37 SDAENPGNNLYVTGLSPRIT-KRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~t-e~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
.......+.|-+.-.++.+. .++|..+|.+||+|..|.|-.. .--|.|+|.+..+|-.|.. ..+..|+++.|
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~i 438 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFI 438 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCcee
Confidence 34445566777777777654 5899999999999999988543 3469999999999988877 79999999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
+|.|-++.
T Consensus 439 Kl~whnps 446 (526)
T KOG2135|consen 439 KLFWHNPS 446 (526)
T ss_pred EEEEecCC
Confidence 99999873
No 135
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.15 E-value=0.071 Score=42.90 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=41.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR 107 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG 107 (387)
...||+ +|.++...||.++|..||.|.--.| . -.-|||...+.+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~-------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-N-------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-C-------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-c-------CCcEEEEeecHHHHHHHHHHhcc
Confidence 345555 9999999999999999999864444 3 34799999999999999998763
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.09 E-value=0.1 Score=40.69 Aligned_cols=67 Identities=24% Similarity=0.499 Sum_probs=40.5
Q ss_pred EEEEe-cCCCCCCHHHHHHHhhhcC-----CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 45 NLYVT-GLSPRITKRELEKHFAAEG-----KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 45 ~LfVg-nLp~~~te~dL~~~F~k~G-----~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+|||. +--..++..+|..+|...+ .|-.|.|. ..|+||+-.. +.|+.++..|++..+.|++|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 2244578899999998764 45577774 4589998875 47889999999999999999998
Q ss_pred Ec
Q 016540 119 RA 120 (387)
Q Consensus 119 ~A 120 (387)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 137
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.07 E-value=0.03 Score=58.66 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhh--cCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAA--EGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR--SVLEGRIITV 117 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k--~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG--~~i~Gr~I~V 117 (387)
..|.|+|.-||..+.+++|+.+|.. |-++..|.+..+. --||+|++.+||+.|++.|.. ++|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4577888999999999999999975 6678888776542 479999999999999887754 3566666543
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.63 E-value=0.28 Score=41.53 Aligned_cols=69 Identities=12% Similarity=0.036 Sum_probs=49.3
Q ss_pred CCCEEE-EecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 016540 42 PGNNLY-VTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG 112 (387)
Q Consensus 42 ~~~~Lf-VgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G 112 (387)
..+.|. +...|..++.++|..+...+- .|..+.|+++.. .++-.++|+|.+.++|.+..+.+||+.++.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444 444555566667766666654 566778887643 256789999999999999999999998763
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.49 E-value=0.0087 Score=65.57 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
++...+.+||++||+..+++.+|...|..+|.|..|.|-..+ -+.-..||||.|.+...+..|+..|.+..|..-.+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 445567899999999999999999999999999999885442 1223569999999999999999989888776444443
Q ss_pred EE
Q 016540 118 ER 119 (387)
Q Consensus 118 ~~ 119 (387)
.+
T Consensus 446 gl 447 (975)
T KOG0112|consen 446 GL 447 (975)
T ss_pred cc
Confidence 33
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.98 E-value=0.15 Score=47.05 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=46.2
Q ss_pred CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEcccC
Q 016540 56 TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD--RSVLEGRIITVERARRR 123 (387)
Q Consensus 56 te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln--G~~i~Gr~I~V~~Ak~~ 123 (387)
..+.|+++|..|+.+..+.++.. -+-..|.|.+.++|+.|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999999887766543 4568999999999999999999 99999999999999644
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.90 E-value=0.036 Score=59.11 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
...+.++.-+|||+||...+..+.+..++..||.|..+..+ -|+|.+|..+.-+..|+..|.-..++|..+
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 45566778899999999999999999999999998776553 299999999999999999999999999888
Q ss_pred EEEEc
Q 016540 116 TVERA 120 (387)
Q Consensus 116 ~V~~A 120 (387)
.+...
T Consensus 104 ~~~~d 108 (668)
T KOG2253|consen 104 IENVD 108 (668)
T ss_pred hccch
Confidence 76654
No 142
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=93.53 E-value=0.22 Score=52.71 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=10.9
Q ss_pred cCcccccccCCCCcccccCCCCC
Q 016540 322 GGATLRVYPQGLGRVFPVGGHPS 344 (387)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~ 344 (387)
+|.+|...-|| .+-|+-|-++
T Consensus 700 sG~GLGak~qG--I~DPiSGGEV 720 (757)
T KOG4368|consen 700 SGSGLGAKEQG--IQDPISGGEV 720 (757)
T ss_pred ccCCccccccc--ccCcccCccc
Confidence 45556655554 3455555443
No 143
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=92.72 E-value=0.89 Score=42.64 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=14.0
Q ss_pred EEEEEeCCHHHHHHHHH--HhCCcee
Q 016540 87 FGFVTMATVEEADRCIK--YLDRSVL 110 (387)
Q Consensus 87 ~aFVeF~s~edA~~Al~--~LnG~~i 110 (387)
+-|-+=.+.++|++||+ .|+|.+|
T Consensus 60 Vrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 60 VRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred EEeeecchHHHHHHhhcceeecccee
Confidence 34445556666666665 3566665
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.32 E-value=0.12 Score=56.75 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=59.7
Q ss_pred EecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEcccCCC
Q 016540 48 VTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL--EGRIITVERARRRRG 125 (387)
Q Consensus 48 VgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i--~Gr~I~V~~Ak~~~~ 125 (387)
+.|.+-..+..-|..+|.+||.|..++.+.+ -..|.|+|...+.|..|+++|+|.++ .|-+.+|.+|+.-..
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 3444445666778999999999999988776 46899999999999999999999875 588899999987644
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.28 E-value=0.079 Score=52.07 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=66.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..+++||+++.+.+.+.++..+|..+|.+..+.+........++++++|.|+..+.+..||.......+.+..+...+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988888777766677789999999999999999999544456666666555554
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 33
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.03 E-value=0.5 Score=48.71 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhc-CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAE-GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG 112 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~-G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G 112 (387)
..+.|+|-.+|..++--||..|+..| -.|..|.|++|... ++=.++|.|.+.++|....+.+||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998876 47889999986432 35578999999999999999999998874
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.01 E-value=0.64 Score=35.75 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 54 RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 54 ~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.++-++|+..|.+|+.. .|..++ .| -||.|.+..+|+.|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46789999999999743 333443 33 489999999999999999999998887765
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=1.8 Score=45.99 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhhc----CCeEEEEEeeCC----------CCCC---------------------
Q 016540 40 ENPGNNLYVTGLSPR-ITKRELEKHFAAE----GKVIDVHLVVDP----------WTRE--------------------- 83 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~-~te~dL~~~F~k~----G~I~~v~i~~d~----------~tg~--------------------- 83 (387)
...+.+|-|.||.|. +...||..+|..| |.|..|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999997 7788999999876 588887764211 1221
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q 016540 84 ----------------SRGFGFVTMATVEEADRCIKYLDRSVLEG--RIITVERA 120 (387)
Q Consensus 84 ----------------srG~aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V~~A 120 (387)
.--||.|+|.+.+.|.+.+..|+|.+|.. ..|.+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11389999999999999999999999874 45555554
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.81 E-value=3.4 Score=40.54 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCH-------HHHHHHHHHh
Q 016540 33 RSRSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATV-------EEADRCIKYL 105 (387)
Q Consensus 33 r~~s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~-------edA~~Al~~L 105 (387)
..++.......+-|||+||+.++...||+..+.+.+.+- +.|.+. | ..|-||+.|.+. .++.+++..+
T Consensus 320 g~~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g-~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 320 GDQSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---G-HFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred CCCCcccCccccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---c-CCcceeEecCCccCCCCCchHHHHHhccC
Confidence 333444455567899999999999999999999887442 222222 2 467899999764 4555555544
Q ss_pred C
Q 016540 106 D 106 (387)
Q Consensus 106 n 106 (387)
|
T Consensus 395 ~ 395 (396)
T KOG4410|consen 395 N 395 (396)
T ss_pred C
Confidence 3
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.01 E-value=1.4 Score=40.47 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=57.7
Q ss_pred CCCCEEEEecCCCCCCH-----HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 016540 41 NPGNNLYVTGLSPRITK-----RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR-I 114 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te-----~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr-~ 114 (387)
+-.++|++++|...+-. ...+.+|.+|-+.....+++ +.++.-|.|.+.+.|..|..++++..|.|. .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34567889998776443 23456677777666555543 245677899999999999999999999998 8
Q ss_pred EEEEEcccC
Q 016540 115 ITVERARRR 123 (387)
Q Consensus 115 I~V~~Ak~~ 123 (387)
+++-+++..
T Consensus 82 ~k~yfaQ~~ 90 (193)
T KOG4019|consen 82 LKLYFAQPG 90 (193)
T ss_pred EEEEEccCC
Confidence 888888754
No 151
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=81.96 E-value=2 Score=33.33 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=48.0
Q ss_pred HHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 58 RELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 58 ~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
.+|++.|...| ++..+..+....+..+..+-||+.....+... .|+=..|+|+.|.|+-....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778888888 78888888888877788899999987665555 34556788999888866543
No 152
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=80.85 E-value=1.5 Score=46.09 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.6
Q ss_pred cCCCCC
Q 016540 339 VGGHPS 344 (387)
Q Consensus 339 ~~~~~~ 344 (387)
+-||+.
T Consensus 549 a~g~~r 554 (653)
T KOG2548|consen 549 AKGLKR 554 (653)
T ss_pred cccccc
Confidence 344444
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.61 E-value=0.12 Score=52.77 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=63.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLV-VDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~-~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.+++.|.|+|+...|+-|..++.+||.|..|..+ .+.. ....-|+|...+.+..||.+|+|..|....++|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 3568899999999999999999999999988553 3332 2344578999999999999999999999999888775
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
..
T Consensus 156 de 157 (584)
T KOG2193|consen 156 DE 157 (584)
T ss_pred hh
Confidence 43
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=80.04 E-value=3.1 Score=32.05 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=46.6
Q ss_pred HHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 58 RELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 58 ~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
++|.+.|...| +|..|.-+....+..+...-||+++...+.+.+ |+=..|++..|+|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 45677777777 788887777777777888999999877664444 4446788999998876543
No 155
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=78.30 E-value=2 Score=45.22 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.6
Q ss_pred cccceEee
Q 016540 377 HKMNLTVL 384 (387)
Q Consensus 377 ~~~~~~~~ 384 (387)
-+.|||..
T Consensus 557 ~r~klt~~ 564 (653)
T KOG2548|consen 557 SRPKLTFF 564 (653)
T ss_pred CCCcccHH
Confidence 34455533
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.73 E-value=11 Score=32.08 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=30.4
Q ss_pred EEEEecCCCC---------CCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHH
Q 016540 45 NLYVTGLSPR---------ITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT-VEEADRCIK 103 (387)
Q Consensus 45 ~LfVgnLp~~---------~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s-~edA~~Al~ 103 (387)
+++|-|++.. ++.++|.+.|..|..++ +..+.++. -..|+++|+|.. ..-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 5667777554 34578999999998875 44445542 257999999974 445555554
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.24 E-value=17 Score=37.44 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=46.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCC-eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGK-VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~-I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~ 103 (387)
+-...|-|-++|.....+||...|+.|+. -.+|.|+-+. .||..|....-|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 34568889999999999999999999974 3456666553 79999999999999998
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=67.84 E-value=5.3 Score=36.27 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~ 104 (387)
........+++.+++..++..++..+|..+|.+..+.+...........+.++.+.....+..++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 4455678999999999999999999999999997777665544333444444555555554444443
No 159
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=64.52 E-value=1.2e+02 Score=33.28 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCEEEEe-cCCCCCCHHHHHHHhhhcCCe-----EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 43 GNNLYVT-GLSPRITKRELEKHFAAEGKV-----IDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 43 ~~~LfVg-nLp~~~te~dL~~~F~k~G~I-----~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
..++||. +--..++..+|..++..-+.| -.|.|. ..|.||+... ..|...+..|++..|.|+.|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 3455553 235568888888888766544 355663 3489999865 558888999999999999999
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
|+.+..
T Consensus 557 ~~~~~~ 562 (629)
T PRK11634 557 MQLLGD 562 (629)
T ss_pred EEECCC
Confidence 998853
No 160
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=59.26 E-value=32 Score=35.56 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCCCCCCCEEEEecCCCC-CCHHHHHHHhhhc----CCeEEEEEeeCC----------CCC-------------------
Q 016540 37 SDAENPGNNLYVTGLSPR-ITKRELEKHFAAE----GKVIDVHLVVDP----------WTR------------------- 82 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~-~te~dL~~~F~k~----G~I~~v~i~~d~----------~tg------------------- 82 (387)
++...++..|-|-||.|+ +...+|..+|..| |+|..|.|.... ..|
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 455677889999999997 6778999998865 566666543110 000
Q ss_pred -------Cc-----------------------------ccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q 016540 83 -------ES-----------------------------RGFGFVTMATVEEADRCIKYLDRSVLEG--RIITVERA 120 (387)
Q Consensus 83 -------~s-----------------------------rG~aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V~~A 120 (387)
.. --||+|+|.+.+.++..+..++|.++.. ..+.+.|.
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 00 1278999999999999999999988764 33444443
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=58.14 E-value=23 Score=34.99 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCC-------CCCCcccEEEEEeCCHHHHHHHH----HHhC
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDP-------WTRESRGFGFVTMATVEEADRCI----KYLD 106 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~-------~tg~srG~aFVeF~s~edA~~Al----~~Ln 106 (387)
+++-.+..|.+.||...++--.+...|.+||+|+.|.++.+. +..+......+-|-+.+.|.... +.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344456788899999888887888889999999999998765 12233467889999998887643 3333
Q ss_pred C--ceeCCeEEEEEEcc
Q 016540 107 R--SVLEGRIITVERAR 121 (387)
Q Consensus 107 G--~~i~Gr~I~V~~Ak 121 (387)
. ..+....|.|.|..
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 2 24566677776665
No 162
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=58.07 E-value=2.2 Score=40.43 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=56.7
Q ss_pred CCCCEEEEec----CCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 41 NPGNNLYVTG----LSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 41 ~~~~~LfVgn----Lp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
+...+++.|+ |...++++.+...|...|.|..+.+..+.+ |.+..++|+++.-....-.|+...++..+--+
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 3345677777 788889999999999999999988877654 77889999999888888888887666554333
No 163
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=56.81 E-value=1.6e+02 Score=27.21 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 016540 95 VEEADRCI 102 (387)
Q Consensus 95 ~edA~~Al 102 (387)
.+||..+|
T Consensus 60 A~DAvr~L 67 (195)
T KOG0107|consen 60 AEDAVRYL 67 (195)
T ss_pred HHHHHhhc
Confidence 33444443
No 164
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=55.49 E-value=56 Score=23.60 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=41.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCH----HHHHHHHHH
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATV----EEADRCIKY 104 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~----edA~~Al~~ 104 (387)
+|.|.||.-..-...|+..+...-.|..+.+-.. .+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888999999999988888877543 46788888743 677777775
No 165
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=54.73 E-value=2.3e+02 Score=28.17 Aligned_cols=7 Identities=100% Similarity=1.493 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 016540 210 YSRSRSP 216 (387)
Q Consensus 210 rsRsRsp 216 (387)
++|+++|
T Consensus 218 ~sRsrsp 224 (354)
T KOG2146|consen 218 YSRSRSP 224 (354)
T ss_pred cccccCC
Confidence 3444444
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=52.35 E-value=18 Score=36.81 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=49.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWT--RESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~t--g~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
.-+.|.|.+||+.+++.+|.+.+..|- .|....+...... ...-+.|||.|...+++......++|++|-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456888999999999999888777654 2222233211110 122478899999999999999999998653
No 167
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=51.61 E-value=1e+02 Score=26.62 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=50.6
Q ss_pred CCCEEEEecCCCC---CCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 42 PGNNLYVTGLSPR---ITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 42 ~~~~LfVgnLp~~---~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
+...|.|...... .+...|++++.+-| .++.+..- .+-..|.|.+.++..+|.+.|....-++..|.+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3456777765333 45667888887776 44555442 346899999999999999988876666777777
Q ss_pred EEcc
Q 016540 118 ERAR 121 (387)
Q Consensus 118 ~~Ak 121 (387)
..+.
T Consensus 106 nl~p 109 (127)
T PRK10629 106 QDDN 109 (127)
T ss_pred ecCC
Confidence 7665
No 168
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=51.14 E-value=14 Score=37.10 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCcCc
Q 016540 286 RYRSFPEVLHRHEG 299 (387)
Q Consensus 286 r~rs~s~s~s~~~~ 299 (387)
+++|.++-++|++.
T Consensus 389 RSrsrsre~s~kh~ 402 (453)
T KOG2888|consen 389 RSRSRSREPSPKHD 402 (453)
T ss_pred cccccccCCCcccc
Confidence 34445555666664
No 169
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=49.23 E-value=20 Score=39.02 Aligned_cols=31 Identities=6% Similarity=-0.190 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCcCccccCCc--ccccccCCCCC
Q 016540 286 RYRSFPEVLHRHEGEALGGA--IHVVLAPNGGL 316 (387)
Q Consensus 286 r~rs~s~s~s~~~~~~~~~~--~~~~~~~~~~~ 316 (387)
+..+.+++.+-.+--+.+++ -++|+-.++.+
T Consensus 806 r~~~~~~~k~~~~~~~~~~~~~~~t~s~s~~~~ 838 (878)
T KOG1847|consen 806 RVEHGHRHKSSKRIKKDEKTVEEETVSKSDQSD 838 (878)
T ss_pred hhcccCcccccccCcCccchhhhhccccCchhh
Confidence 44455555444443333333 24555555443
No 170
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=47.12 E-value=45 Score=33.55 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=10.0
Q ss_pred ccEEEEEeCCHHHHHHHHH
Q 016540 85 RGFGFVTMATVEEADRCIK 103 (387)
Q Consensus 85 rG~aFVeF~s~edA~~Al~ 103 (387)
..-.||-|.-+.-|-++|.
T Consensus 173 RT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY 191 (367)
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 3345666665555544444
No 171
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=46.10 E-value=2.9 Score=44.39 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
-.+|.|||.|+.++++-++|+.++..+--+..+.+-.........-+++|+|.--.++..|+.+||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 55789999999999999999999888765555544322222223467889998777777788888877654
No 172
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.60 E-value=28 Score=34.21 Aligned_cols=67 Identities=22% Similarity=0.428 Sum_probs=42.7
Q ss_pred CCEEEEecCCCC------------CCHHHHHHHhhhcCCeEEEEEee-CC----CCCCc-----ccEEE---------EE
Q 016540 43 GNNLYVTGLSPR------------ITKRELEKHFAAEGKVIDVHLVV-DP----WTRES-----RGFGF---------VT 91 (387)
Q Consensus 43 ~~~LfVgnLp~~------------~te~dL~~~F~k~G~I~~v~i~~-d~----~tg~s-----rG~aF---------Ve 91 (387)
.-|||+.+||.. .+++-|...|..||+|..|+|+. |+ .+|+. .||+| |+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888887753 34677999999999999988753 22 34443 23433 44
Q ss_pred eCCHHHHHHHHHHhCCce
Q 016540 92 MATVEEADRCIKYLDRSV 109 (387)
Q Consensus 92 F~s~edA~~Al~~LnG~~ 109 (387)
|........|+..|.|..
T Consensus 229 fmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHhHHHHHHHHhcch
Confidence 444455556666666654
No 173
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.80 E-value=90 Score=25.09 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=41.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhh-cC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAA-EG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k-~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L 105 (387)
..|+.-++..++..+|+..+++ || .|..|..+.-+ .+ .--|||.|..-.+|.+....|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 3556667889999999999887 55 66677655443 12 346999999888887765543
No 174
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.11 E-value=16 Score=35.44 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=12.9
Q ss_pred eeechhhhHHHhhhccccccccceEeeec
Q 016540 358 QVLDLSQDLLALGLLHRNHHKMNLTVLCS 386 (387)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (387)
+-+|+|+||..|. +.|++|+|+
T Consensus 141 ~t~DISaDL~ELa-------~T~v~vV~A 162 (310)
T COG2313 141 HTFDISADLTELA-------RTNVTVVCA 162 (310)
T ss_pred cccccchhHHHHh-------cCCeEEEec
Confidence 3456666666654 456666664
No 175
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=42.23 E-value=8 Score=38.93 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=37.9
Q ss_pred HHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016540 57 KRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS 108 (387)
Q Consensus 57 e~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~ 108 (387)
...|.+++.+.|.|..-.|..-. +-|.+||.+-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 47788888999988765544333 4578999999999999999999875
No 176
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.59 E-value=1.3e+02 Score=23.77 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhh-cC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 016540 45 NLYVTGLSPRITKRELEKHFAA-EG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k-~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~ 104 (387)
.-|+..++..++..+|+..+++ |+ +|..|..+.-+ . ..--|||.+..-..|.+.-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 4567778899999999999887 55 56666554443 1 234599999887777765443
No 177
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=37.80 E-value=56 Score=32.94 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.6
Q ss_pred CEEEEe
Q 016540 44 NNLYVT 49 (387)
Q Consensus 44 ~~LfVg 49 (387)
+.|||-
T Consensus 174 T~v~vr 179 (367)
T KOG0835|consen 174 TDVFVR 179 (367)
T ss_pred cceeee
Confidence 344443
No 178
>PF14893 PNMA: PNMA
Probab=36.45 E-value=37 Score=34.25 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=44.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhh----cCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAA----EGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k----~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
.+....|.|.+||.++++++|++.+.. .|...-+.-+..++. +...|||||...-+-...=..+.| .|-.+
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n~~~iP~~i~g---~gg~W 89 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVNYSLIPREIPG---KGGPW 89 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccchhhCchhcCC---CCCce
Confidence 345678999999999999999888764 343222211111111 245789999764432222222222 24566
Q ss_pred EEEEccc
Q 016540 116 TVERARR 122 (387)
Q Consensus 116 ~V~~Ak~ 122 (387)
+|-+-.+
T Consensus 90 ~Vv~~p~ 96 (331)
T PF14893_consen 90 RVVFKPP 96 (331)
T ss_pred EEEecCC
Confidence 6665543
No 179
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=35.27 E-value=2.3e+02 Score=28.19 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=6.6
Q ss_pred EEeCCHHHHHHHHHHhC
Q 016540 90 VTMATVEEADRCIKYLD 106 (387)
Q Consensus 90 VeF~s~edA~~Al~~Ln 106 (387)
|-|++..-++-.+..|.
T Consensus 57 lgfEDdVViefvynqLe 73 (354)
T KOG2146|consen 57 LGFEDDVVIEFVYNQLE 73 (354)
T ss_pred hccccchhHHHHHHHHh
Confidence 33444333333333333
No 180
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=34.95 E-value=7.8 Score=35.29 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=3.6
Q ss_pred ccccceee
Q 016540 347 TLEGATLG 354 (387)
Q Consensus 347 ~~~~~~~~ 354 (387)
.++|+.++
T Consensus 162 kv~g~dV~ 169 (196)
T KOG3263|consen 162 KVGGSDVG 169 (196)
T ss_pred cccCcccc
Confidence 44444444
No 181
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=34.83 E-value=26 Score=38.19 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=55.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..+||+.|--..-+..-+..+|..+++++...++.....+...+-||++|.....++.|.. |.+..+....+
T Consensus 511 ~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ 582 (681)
T KOG3702|consen 511 QPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCL 582 (681)
T ss_pred CCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccce
Confidence 3488888887777788888999999999988888777777677789999999988877755 66655554433
No 182
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.23 E-value=79 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=15.2
Q ss_pred HHHHHHhhhcCCeEEEEE
Q 016540 58 RELEKHFAAEGKVIDVHL 75 (387)
Q Consensus 58 ~dL~~~F~k~G~I~~v~i 75 (387)
++|+++|+.+|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976654
No 183
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.53 E-value=48 Score=32.47 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=26.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccCC
Q 016540 88 GFVTMATVEEADRCIKYLDRSVLEGRIITVERARRRR 124 (387)
Q Consensus 88 aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~~ 124 (387)
|||+|++..+|+.|++.+.... ...+.|+.|....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999655443 3455777776543
No 184
>PRK11901 hypothetical protein; Reviewed
Probab=31.17 E-value=1e+02 Score=31.08 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=40.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEE--EeCCHHHHHHHHHHhCCce
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFV--TMATVEEADRCIKYLDRSV 109 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFV--eF~s~edA~~Al~~LnG~~ 109 (387)
....+|-|..+ ..++.|..|..+++ +..++|......|+ .-|.+| .|.+.++|+.||..|....
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34456666554 45788888887775 34454444333332 234433 6899999999999987543
No 185
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.98 E-value=35 Score=32.81 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDV 73 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v 73 (387)
.+...+||+-|||..+|++.|..+..++|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456789999999999999999999999865443
No 186
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=29.88 E-value=1.4e+02 Score=26.46 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=26.8
Q ss_pred eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016540 70 VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS 108 (387)
Q Consensus 70 I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~ 108 (387)
|..|.++.. .+||.||+....+++..+|..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556655544 5899999999889999999888764
No 187
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=29.39 E-value=32 Score=34.05 Aligned_cols=38 Identities=37% Similarity=0.789 Sum_probs=19.4
Q ss_pred cccccCCCCCccccccceeeeeeeeechhhhHHHhhhccccccccceEeeec
Q 016540 335 RVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLLHRNHHKMNLTVLCS 386 (387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (387)
.||-.|| |+|.--+|+ +-+|+|+||.+|+ +.+++|+|+
T Consensus 112 ~VfaTGG------iGGVHrga~-~t~DiSaDL~eL~-------rtpv~VV~a 149 (293)
T PF04227_consen 112 KVFATGG------IGGVHRGAE-ETFDISADLTELA-------RTPVAVVCA 149 (293)
T ss_dssp -EEE-S-------B--B-TT----SS-B-HHHHHHT-------TS-EEEEES
T ss_pred CEEEeCC------cccCCCCCc-CcchhhhHHHHHh-------cCCceEEEc
Confidence 3676665 455444444 4579999999998 456888885
No 188
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=8.4 Score=39.97 Aligned_cols=77 Identities=5% Similarity=-0.187 Sum_probs=55.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+..|+..|+..+++.+|.-+|.-||.|.-+.+-.....+...-.+||.-.. .++..+|..+.-..+.|.++.|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999998877765444444455567776543 45667776666566667777777665
No 189
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=28.57 E-value=64 Score=35.30 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCCCCcCccc
Q 016540 279 GRYYGRHRYRSFPEVLHRHEGEA 301 (387)
Q Consensus 279 ~r~~~r~r~rs~s~s~s~~~~~~ 301 (387)
+++.++...++.+.+-+|.+.-+
T Consensus 795 RrsRsr~~d~~r~~~~~~~k~~~ 817 (878)
T KOG1847|consen 795 RRSRSRHEDSSRVEHGHRHKSSK 817 (878)
T ss_pred ccccccccchhhhcccCcccccc
Confidence 33334444444555556655444
No 190
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=27.60 E-value=2.7e+02 Score=21.06 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHH
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT----VEEADRCIKY 104 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s----~edA~~Al~~ 104 (387)
..+|+|.++.-.--...++..+.....|..+.+-.. .+-++|+|.+ .++...||+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCCcCCHHHHHHHHHH
Confidence 457888888877777889998988877888877554 4569999987 4555556554
No 191
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=27.10 E-value=1.9e+02 Score=25.76 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=36.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhh-cC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 016540 45 NLYVTGLSPRITKRELEKHFAA-EG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k-~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~ 103 (387)
..||.-++...+..+|++.+++ |+ .|..|..+.-+. | .--|||.+....+|.+...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 4556667888899999988887 54 555665544332 2 2358999987666554433
No 192
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=26.40 E-value=2e+02 Score=26.31 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=39.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWT-RESRGFGFVTMATVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~t-g~srG~aFVeF~s~edA~~Al~~L 105 (387)
.=||+|.+.-.+-..|-+.|...|-- |.++..+.. ..+.++-+|.|.+.+++.+++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~--V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAE--VTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-E--EEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCE--EEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 45789999988888998888887742 333333322 225688999999999999998865
No 193
>PF09144 YpM: Yersinia pseudotuberculosis mitogen; InterPro: IPR015227 Members of this family of Yersinia pseudotuberculosis mitogens adopt a sandwich structure consisting of nine strands in two beta sheets, in a jelly-roll topology. As with other superantigens, they are able to excessively activate T cells by binding to the T cell receptor []. ; PDB: 1PM4_B 1POQ_A.
Probab=26.29 E-value=36 Score=27.73 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=10.8
Q ss_pred ccccccCCCCcccccCC
Q 016540 325 TLRVYPQGLGRVFPVGG 341 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ 341 (387)
+.++--||+|+|.-.|.
T Consensus 6 tytgtiqgkgevci~gn 22 (117)
T PF09144_consen 6 TYTGTIQGKGEVCIIGN 22 (117)
T ss_dssp EEEEEE-TT-EEEEEES
T ss_pred eeeeEeecceeEEEEeC
Confidence 44566799999987764
No 194
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.99 E-value=32 Score=35.45 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCCCEEEEecCCCCCCH--------HHHHHHhhh--cCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 016540 41 NPGNNLYVTGLSPRITK--------RELEKHFAA--EGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te--------~dL~~~F~k--~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~ 103 (387)
.....+|+.++....+. ++|+.+|.. .+.+..|.+-.+.......|..|++|.....|++++.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34456777776655444 489999988 6777777776666566678899999999999999974
No 195
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.30 E-value=2.5e+02 Score=21.18 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=28.7
Q ss_pred HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016540 58 RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD 106 (387)
Q Consensus 58 ~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln 106 (387)
.+|.+++.++| +..+.|. . .| .-++.|+.|.+.++++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-G--sG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-G--SG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-T--TS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-C--CC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 45677777888 4444442 1 11 14677888889999888887764
No 196
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.11 E-value=1.5e+02 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=22.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCce
Q 016540 84 SRGFGFVTMATVEEADRCIKYLDRSV 109 (387)
Q Consensus 84 srG~aFVeF~s~edA~~Al~~LnG~~ 109 (387)
.+||-|||=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 58999999999999999999877654
No 197
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=24.00 E-value=84 Score=28.81 Aligned_cols=54 Identities=43% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016540 168 PSYSSERSRDRSYSPDYRRRRPYSPNYSRRRSYSSYYSRRRSYSRSRSPYSRSP 221 (387)
Q Consensus 168 p~r~R~RsRsRsrS~~~~r~RsrS~~r~RsRSrs~~~~R~RsrsRsRsp~~rs~ 221 (387)
..++++++++++++....+.++++..+..+.++....+..+.+.+++++...+.
T Consensus 57 R~RSRSRSrSr~R~~r~RR~RsRS~~Rr~S~sR~r~~ss~~RrRrSRS~~R~s~ 110 (182)
T PF06495_consen 57 RSRSRSRSRSRSRSSRHRRSRSRSRERRRSRSRHRSRSSTRRRRRSRSRHRRSR 110 (182)
T ss_pred ccccccccccccccchhhccccccccccccccccccccccchhhhccCccccCC
No 198
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.92 E-value=1.9e+02 Score=24.15 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=33.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC--C------HHHHHHHHHHhCCceeCCeEEE
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA--T------VEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~--s------~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.||||++|.....+.|++. .+..|..+.-. .......++-++.|. + .+....|++.++...-.|.+|-
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~--~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNE--VPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCC--CCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 5999999977655444442 33445443221 111112344444442 2 1233445555554444555555
Q ss_pred EE
Q 016540 117 VE 118 (387)
Q Consensus 117 V~ 118 (387)
|-
T Consensus 83 VH 84 (138)
T smart00195 83 VH 84 (138)
T ss_pred EE
Confidence 54
No 199
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=23.75 E-value=52 Score=31.14 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=38.9
Q ss_pred cccCCCCcccccCCCCCccccccceeeeeeeeechhhhHHHhhhccc--cccccceEeee
Q 016540 328 VYPQGLGRVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLLHR--NHHKMNLTVLC 385 (387)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 385 (387)
.+++....|+-+|+=.-.+++.=|..+.+|..+|++.++++.---+- +.+.-|++++|
T Consensus 40 ~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~ 99 (255)
T PRK11036 40 ELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH 99 (255)
T ss_pred hcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE
Confidence 34455567888887777777777778899999999999887533221 22234556655
No 200
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=23.63 E-value=2e+02 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhh-hcCCeEEEEEeeCC----CCCCcccEEEEEeCCHHHHHH
Q 016540 54 RITKRELEKHFA-AEGKVIDVHLVVDP----WTRESRGFGFVTMATVEEADR 100 (387)
Q Consensus 54 ~~te~dL~~~F~-k~G~I~~v~i~~d~----~tg~srG~aFVeF~s~edA~~ 100 (387)
+.+..+|++-+. .|+.=.++.++..- ..|.+.|||.| |.+.+.|+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 566777766664 35533333333332 33566677776 666665544
No 201
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.44 E-value=3.2e+02 Score=21.93 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016540 57 KRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD 106 (387)
Q Consensus 57 e~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln 106 (387)
++.++++++++| +|+.+.+.... --.+.++++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHHH
Confidence 355777777765 78888776544 34577889999988887765443
No 202
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=4.4e+02 Score=27.01 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=6.8
Q ss_pred ccceeeeeee
Q 016540 349 EGATLGAQVQ 358 (387)
Q Consensus 349 ~~~~~~~~~~ 358 (387)
|||.+||-|+
T Consensus 330 EGaamA~Yv~ 339 (426)
T KOG2812|consen 330 EGAAMAAYVA 339 (426)
T ss_pred ccHHHHHHHH
Confidence 6777777665
No 203
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=22.85 E-value=82 Score=34.89 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=6.4
Q ss_pred EEEEeCCHHHHH
Q 016540 88 GFVTMATVEEAD 99 (387)
Q Consensus 88 aFVeF~s~edA~ 99 (387)
+||.|.++..++
T Consensus 695 ~~~k~~de~~~~ 706 (877)
T KOG0151|consen 695 NPVKYDDEDRDK 706 (877)
T ss_pred cccccchhhhHH
Confidence 566665544443
No 204
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.82 E-value=1.4e+02 Score=31.64 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=44.9
Q ss_pred CEEEEecCCCCCCH---HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 44 NNLYVTGLSPRITK---RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 44 ~~LfVgnLp~~~te---~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
.-=+||||..-... ..|..+-.+||.|-.+.+-. .-.|...+.+.|++|+. -++..+.+++.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 33458888665443 45666666899998777721 24777899999999999 47888888875
No 205
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=22.53 E-value=38 Score=28.00 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=38.0
Q ss_pred ccccccCCCCcccccCCCCCccccc-cceeeeeeeeech-hhhHHHhhhccccccccceEeeecC
Q 016540 325 TLRVYPQGLGRVFPVGGHPSGVTLE-GATLGAQVQVLDL-SQDLLALGLLHRNHHKMNLTVLCSL 387 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
.+.-+|.|.|.+|-|+|+...|-.- +..|-|--..-=- -+-.|+.|++.. +.-+++|.|-|
T Consensus 7 ~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~--~~g~~~V~CPl 69 (104)
T PF13806_consen 7 PLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGD--GNGEPCVACPL 69 (104)
T ss_dssp ETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEE--CTTEEEEEETT
T ss_pred cHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEcc--CCCCEEEECCC
Confidence 4567889999999998888776544 3333322222222 356688888865 35566777754
No 206
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=22.44 E-value=42 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.7
Q ss_pred HHHhhhcccccccc
Q 016540 366 LLALGLLHRNHHKM 379 (387)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (387)
+++|||+|-+|.+.
T Consensus 3 ~lgLGl~~aGs~~~ 16 (35)
T PF01851_consen 3 ILGLGLIYAGSGNE 16 (35)
T ss_dssp HHHHHHHTTTT--H
T ss_pred HHHHHHHHcCCCCH
Confidence 68999999998765
No 207
>PF14021 DUF4237: Protein of unknown function (DUF4237)
Probab=22.25 E-value=74 Score=25.86 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=27.0
Q ss_pred CCCcccccCCCCCccccccceeeeeeeeechhhhHHHhhhccc
Q 016540 332 GLGRVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLLHR 374 (387)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (387)
=.|.+-|.-|.|-| |.|+++-.--++||.+|.|..
T Consensus 54 ~~G~iaPwFgqpGG--------G~Qy~~~~~i~~L~~~G~L~~ 88 (90)
T PF14021_consen 54 QSGPIAPWFGQPGG--------GTQYKLPRSIQELLENGYLRE 88 (90)
T ss_pred EEeeeccccCCCCC--------eEEEEecCcHHHHHHCCceEE
Confidence 35778888888754 567877777889999999864
No 208
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.23 E-value=1.6e+02 Score=23.96 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=28.2
Q ss_pred EEEEecCCCCCCHHHH---HHHhhhcCCeEEEEE--eeCCCCCCcccEEEEEeC
Q 016540 45 NLYVTGLSPRITKREL---EKHFAAEGKVIDVHL--VVDPWTRESRGFGFVTMA 93 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL---~~~F~k~G~I~~v~i--~~d~~tg~srG~aFVeF~ 93 (387)
..|+.|||..+.+..+ +..|..+..-..|.+ ......+...|++++.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4688999999888765 455555554444433 223344556777765443
No 209
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=21.81 E-value=60 Score=25.85 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=32.6
Q ss_pred ccccCCCCCccccccce--eeeeeeeechhhhHHHhhhccc--cccccceEeee
Q 016540 336 VFPVGGHPSGVTLEGAT--LGAQVQVLDLSQDLLALGLLHR--NHHKMNLTVLC 385 (387)
Q Consensus 336 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 385 (387)
|.-+|.-.-.+++.=|- .+++|..+|++..++++-.-.- ++...|++++|
T Consensus 5 vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 58 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQ 58 (112)
T ss_dssp EEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE
T ss_pred EEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 44455444444555555 6889999999999887654333 45566777766
No 210
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=21.77 E-value=41 Score=27.91 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=28.1
Q ss_pred ccccccCCCCcccccCCCCCcccc---ccceeeeeeeeechhhhHHHhhhc
Q 016540 325 TLRVYPQGLGRVFPVGGHPSGVTL---EGATLGAQVQVLDLSQDLLALGLL 372 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 372 (387)
.+.-+|.|.+.+|-|+|+...|.. +|.+.|.+=.-----..+|+.|++
T Consensus 9 ~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~ 59 (108)
T PRK09511 9 KIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLI 59 (108)
T ss_pred EHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceE
Confidence 456688999999999998877763 454433221100001125777776
No 211
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.44 E-value=2e+02 Score=26.63 Aligned_cols=50 Identities=24% Similarity=0.084 Sum_probs=32.4
Q ss_pred CCHHHHHHHhhhc-CCeEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHH
Q 016540 55 ITKRELEKHFAAE-GKVIDVHLVVDPWT-RESRGFGFVTMATVEEADRCIKY 104 (387)
Q Consensus 55 ~te~dL~~~F~k~-G~I~~v~i~~d~~t-g~srG~aFVeF~s~edA~~Al~~ 104 (387)
.|+++|.++..-. |++..|.+-..... ...+|-.||+|.+.++|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4555555554332 67777765332211 13578899999999999998774
No 212
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.07 E-value=1.9e+02 Score=23.34 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA 93 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~ 93 (387)
+...-|||+|++..+-|.-.+.+.+..++-.-+ |+....+ ..||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEccCC--CCCEEEEEeC
Confidence 345679999999988776555555544333223 3332222 5789998773
No 213
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=21.04 E-value=3.5e+02 Score=22.02 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=32.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhhc--------CCeEEEEEeeCC-----CCCCccc-EEEEEeCCHHHHHHHHHH
Q 016540 45 NLYVTGLSPRITKRELEKHFAAE--------GKVIDVHLVVDP-----WTRESRG-FGFVTMATVEEADRCIKY 104 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~--------G~I~~v~i~~d~-----~tg~srG-~aFVeF~s~edA~~Al~~ 104 (387)
++|| |.++++++++..++.++ |+|..+...-.+ ..+...| |.++.|.-..++.+.|+.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4555 45666776665554433 466665422111 1223344 678889877777666663
No 214
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.86 E-value=1.1e+02 Score=23.42 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 87 FGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 87 ~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
+.+|.|.+..+|.+|-+.|....|..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999888876655433
No 215
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.80 E-value=2.9e+02 Score=18.98 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCe
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKV 70 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I 70 (387)
..++|.+.......++|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 567888877678889999999998863
No 216
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=1.7e+02 Score=26.36 Aligned_cols=64 Identities=11% Similarity=0.319 Sum_probs=37.6
Q ss_pred CCCCCCCCEEEEecC--CCC-CCHHHHHHHh-------hhcCCeEEEEEeeCCCCCCcccEEE-EEeCCHHHHHH
Q 016540 37 SDAENPGNNLYVTGL--SPR-ITKRELEKHF-------AAEGKVIDVHLVVDPWTRESRGFGF-VTMATVEEADR 100 (387)
Q Consensus 37 ~~~~~~~~~LfVgnL--p~~-~te~dL~~~F-------~k~G~I~~v~i~~d~~tg~srG~aF-VeF~s~edA~~ 100 (387)
+.+.++...||...| +.+ +...-...|+ ..-|+|+.|.-+..+....-+.||+ +.|.+.....+
T Consensus 11 PTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSRsG~HN 85 (169)
T KOG0829|consen 11 PTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSRSGTHN 85 (169)
T ss_pred CCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccCCcchH
Confidence 455667778888766 333 3333333333 3349999998777766666677774 55655443333
No 217
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=20.74 E-value=3.8e+02 Score=20.26 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=36.3
Q ss_pred EEEecCCCCCCHHHHHHHhh-hcCCe-EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016540 46 LYVTGLSPRITKRELEKHFA-AEGKV-IDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD 106 (387)
Q Consensus 46 LfVgnLp~~~te~dL~~~F~-k~G~I-~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln 106 (387)
++.-.|+..++.++|..... +|+.. ..+.|.+... -| -+|.+.+.+|.+.|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De----dg-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE----DG-DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC----CC-CEEEecCHHHHHHHHHHHH
Confidence 44556788899988877664 45432 2333332221 12 3899999999999999654
No 218
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=20.61 E-value=28 Score=32.06 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=8.7
Q ss_pred CCCCCCCCEEEEecCCC
Q 016540 37 SDAENPGNNLYVTGLSP 53 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~ 53 (387)
+.+..+...||.-+.++
T Consensus 45 PG~~~dkPNvY~Fgt~Y 61 (195)
T KOG2424|consen 45 PGPSPDKPNVYDFGTTY 61 (195)
T ss_pred CCCCCCCCCccccCCcH
Confidence 33444455666655444
Done!