Query 016540
Match_columns 387
No_of_seqs 402 out of 2452
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 2.1E-22 7.2E-27 205.5 25.4 91 40-130 99-189 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 5.3E-21 1.8E-25 156.4 12.1 82 41-122 17-98 (99)
3 2cq0_A Eukaryotic translation 99.8 7.6E-20 2.6E-24 149.1 13.1 89 38-126 10-98 (103)
4 3s8s_A Histone-lysine N-methyl 99.8 6.1E-20 2.1E-24 153.0 12.4 84 40-123 3-86 (110)
5 2dnm_A SRP46 splicing factor; 99.8 6.9E-20 2.4E-24 149.4 10.9 89 37-125 7-95 (103)
6 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 4.1E-24 151.0 12.3 91 37-127 19-109 (115)
7 2dnz_A Probable RNA-binding pr 99.8 1.7E-19 5.7E-24 144.6 12.5 85 41-125 3-87 (95)
8 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.9E-24 147.6 11.7 90 38-127 7-96 (102)
9 1x5u_A Splicing factor 3B subu 99.8 2E-19 6.8E-24 147.0 12.9 89 37-125 9-97 (105)
10 2dgo_A Cytotoxic granule-assoc 99.8 3.2E-19 1.1E-23 148.3 14.3 89 37-125 9-97 (115)
11 1whw_A Hypothetical protein ri 99.8 2.5E-19 8.5E-24 144.9 13.2 86 40-125 5-90 (99)
12 2dgs_A DAZ-associated protein 99.8 2.4E-19 8.1E-24 145.2 13.0 89 38-127 5-93 (99)
13 1x4h_A RNA-binding protein 28; 99.8 2.9E-19 9.9E-24 147.2 13.6 90 37-126 9-104 (111)
14 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-19 6.1E-24 142.0 11.6 84 40-123 3-86 (87)
15 2dnh_A Bruno-like 5, RNA bindi 99.8 3.3E-19 1.1E-23 145.6 13.4 88 39-127 11-101 (105)
16 2cqc_A Arginine/serine-rich sp 99.8 2.6E-19 8.8E-24 143.3 12.3 86 37-122 9-94 (95)
17 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-19 7.2E-24 146.1 11.9 88 38-125 7-94 (102)
18 2do4_A Squamous cell carcinoma 99.8 4.6E-19 1.6E-23 143.7 13.8 87 37-124 11-97 (100)
19 3md1_A Nuclear and cytoplasmic 99.8 3.2E-19 1.1E-23 139.3 12.0 82 43-124 1-82 (83)
20 1u6f_A Tcubp1, RNA-binding pro 99.8 4.2E-19 1.4E-23 152.3 13.8 90 38-127 37-126 (139)
21 2d9p_A Polyadenylate-binding p 99.8 3E-19 1E-23 145.6 12.2 88 37-126 9-96 (103)
22 1x5t_A Splicing factor 3B subu 99.8 1.9E-19 6.5E-24 144.6 10.9 85 41-125 3-88 (96)
23 2e5h_A Zinc finger CCHC-type a 99.8 3.8E-19 1.3E-23 142.2 12.4 85 37-121 10-94 (94)
24 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.6E-19 8.8E-24 140.5 11.2 82 40-121 4-85 (85)
25 3ex7_B RNA-binding protein 8A; 99.8 1.7E-19 5.9E-24 152.3 10.9 89 37-125 16-104 (126)
26 2cph_A RNA binding motif prote 99.8 3.6E-19 1.2E-23 145.7 12.4 90 37-126 9-100 (107)
27 2dng_A Eukaryotic translation 99.8 5.7E-19 1.9E-23 144.1 13.4 87 37-125 9-95 (103)
28 1p27_B RNA-binding protein 8A; 99.8 3E-19 1E-23 146.2 11.3 88 37-124 17-104 (106)
29 1wi8_A EIF-4B, eukaryotic tran 99.8 5E-19 1.7E-23 144.7 12.4 87 37-125 9-96 (104)
30 2cq3_A RNA-binding protein 9; 99.8 1.5E-18 5E-23 141.5 15.0 90 36-127 8-97 (103)
31 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.7E-24 146.1 7.8 83 43-125 1-85 (91)
32 2cpe_A RNA-binding protein EWS 99.8 4.5E-19 1.6E-23 146.9 11.7 88 38-125 10-105 (113)
33 2dgp_A Bruno-like 4, RNA bindi 99.8 3.5E-19 1.2E-23 145.7 10.8 89 37-125 7-98 (106)
34 2x1f_A MRNA 3'-END-processing 99.8 5.5E-19 1.9E-23 142.4 11.8 83 42-124 1-83 (96)
35 1oo0_B CG8781-PA, drosophila Y 99.8 5.1E-19 1.7E-23 145.9 11.8 89 37-125 20-108 (110)
36 2cpf_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 143.3 11.0 85 41-125 3-90 (98)
37 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.8E-23 144.7 14.5 88 36-124 10-97 (116)
38 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.3E-18 7.8E-23 140.3 15.2 87 37-125 9-95 (103)
39 2lkz_A RNA-binding protein 5; 99.8 1.9E-19 6.6E-24 146.5 8.7 84 39-122 5-94 (95)
40 2fy1_A RNA-binding motif prote 99.8 6.9E-19 2.4E-23 147.6 12.3 84 40-124 4-87 (116)
41 2la6_A RNA-binding protein FUS 99.8 6.2E-19 2.1E-23 142.9 11.6 86 36-121 6-99 (99)
42 2div_A TRNA selenocysteine ass 99.8 4.7E-19 1.6E-23 143.2 10.8 87 38-124 4-95 (99)
43 3ulh_A THO complex subunit 4; 99.8 7.4E-19 2.5E-23 144.0 12.1 84 37-121 23-106 (107)
44 2do0_A HnRNP M, heterogeneous 99.8 3E-18 1E-22 141.9 15.2 87 37-124 9-95 (114)
45 2dgx_A KIAA0430 protein; RRM d 99.8 1.3E-18 4.3E-23 140.7 12.6 84 38-124 4-91 (96)
46 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.5E-18 5E-23 152.1 13.6 87 38-124 34-120 (156)
47 3p5t_L Cleavage and polyadenyl 99.8 1.2E-19 4E-24 144.9 6.0 82 44-125 2-85 (90)
48 2kxn_B Transformer-2 protein h 99.8 3.9E-19 1.4E-23 152.1 9.6 88 37-124 40-127 (129)
49 1x4a_A Splicing factor, argini 99.8 2.8E-18 9.5E-23 141.4 14.2 86 37-125 16-101 (109)
50 2dh8_A DAZ-associated protein 99.8 8.5E-19 2.9E-23 143.4 11.0 87 38-125 11-97 (105)
51 4a8x_A RNA-binding protein wit 99.8 8.4E-19 2.9E-23 138.2 10.5 83 42-124 3-86 (88)
52 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 136.8 12.1 83 37-120 5-87 (87)
53 4f25_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 145.9 11.4 82 42-125 4-85 (115)
54 3ns6_A Eukaryotic translation 99.8 2.7E-19 9.1E-24 146.0 7.1 84 40-123 3-93 (100)
55 2ywk_A Putative RNA-binding pr 99.8 1.2E-18 4E-23 139.7 10.7 85 37-122 10-94 (95)
56 2cqp_A RNA-binding protein 12; 99.8 7.6E-19 2.6E-23 141.7 9.7 85 39-123 11-95 (98)
57 2khc_A Testis-specific RNP-typ 99.8 6.9E-19 2.4E-23 146.9 9.7 85 37-121 34-118 (118)
58 2jrs_A RNA-binding protein 39; 99.8 1E-18 3.5E-23 144.7 10.3 87 37-123 20-106 (108)
59 2cq4_A RNA binding motif prote 99.8 9.9E-19 3.4E-23 145.2 10.1 84 40-124 22-105 (114)
60 2dhg_A TRNA selenocysteine ass 99.8 1.4E-18 4.9E-23 141.6 10.9 86 39-125 5-92 (104)
61 2cqg_A TDP-43, TAR DNA-binding 99.8 5.8E-18 2E-22 137.9 14.2 87 37-125 9-95 (103)
62 1x4c_A Splicing factor, argini 99.8 7.7E-18 2.6E-22 138.9 14.8 78 39-123 11-93 (108)
63 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-18 8.7E-23 152.4 12.6 89 37-125 66-154 (165)
64 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-18 8.3E-23 137.0 11.0 84 39-124 4-87 (92)
65 3ucg_A Polyadenylate-binding p 99.8 2.9E-18 9.8E-23 135.6 11.2 81 42-123 5-85 (89)
66 1p1t_A Cleavage stimulation fa 99.8 5E-19 1.7E-23 144.1 6.9 86 39-124 4-89 (104)
67 3n9u_C Cleavage and polyadenyl 99.8 2.3E-18 7.9E-23 152.2 11.6 83 41-123 53-137 (156)
68 2kt5_A RNA and export factor-b 99.8 6.1E-18 2.1E-22 142.6 13.4 88 38-126 30-117 (124)
69 3beg_B Splicing factor, argini 99.8 1.1E-18 3.7E-23 146.1 8.6 74 41-121 14-92 (115)
70 2ek1_A RNA-binding protein 12; 99.8 8.9E-19 3E-23 140.4 7.6 83 40-122 12-94 (95)
71 1x4b_A Heterogeneous nuclear r 99.8 1.4E-18 4.8E-23 144.7 9.1 86 39-125 23-108 (116)
72 2cpi_A CCR4-NOT transcription 99.8 3.6E-18 1.2E-22 141.7 11.5 86 39-124 11-102 (111)
73 2fc9_A NCL protein; structure 99.8 7E-18 2.4E-22 136.9 12.8 85 37-125 9-93 (101)
74 2rs2_A Musashi-1, RNA-binding 99.8 3.4E-18 1.2E-22 141.7 11.0 87 38-125 20-106 (109)
75 2dgw_A Probable RNA-binding pr 99.8 7.5E-18 2.6E-22 134.2 12.4 83 39-124 6-88 (91)
76 2m2b_A RNA-binding protein 10; 99.8 1.1E-18 3.6E-23 149.1 7.7 88 37-125 17-110 (131)
77 2cpx_A Hypothetical protein FL 99.8 2E-18 7E-23 143.2 8.9 91 37-127 19-109 (115)
78 2kn4_A Immunoglobulin G-bindin 99.8 5.9E-18 2E-22 148.0 12.3 88 38-125 65-152 (158)
79 1wel_A RNA-binding protein 12; 99.7 1.4E-18 4.7E-23 146.9 7.8 84 39-123 21-104 (124)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.5E-18 2.6E-22 144.0 12.2 84 37-120 57-140 (140)
81 2f3j_A RNA and export factor b 99.7 1E-17 3.5E-22 150.9 13.8 84 39-123 84-167 (177)
82 2dgu_A Heterogeneous nuclear r 99.7 1.9E-17 6.5E-22 135.1 14.1 80 38-125 6-85 (103)
83 2jwn_A Embryonic polyadenylate 99.7 6.4E-18 2.2E-22 142.1 11.5 82 42-124 35-116 (124)
84 2dgt_A RNA-binding protein 30; 99.7 1.7E-17 5.8E-22 132.6 13.1 80 38-125 5-84 (92)
85 2fc8_A NCL protein; structure 99.7 1E-17 3.4E-22 136.1 11.9 85 38-125 10-94 (102)
86 1x4e_A RNA binding motif, sing 99.7 8.2E-19 2.8E-23 137.9 5.2 81 41-121 3-83 (85)
87 1sjq_A Polypyrimidine tract-bi 99.7 5.2E-18 1.8E-22 140.8 10.0 81 39-125 12-94 (105)
88 1x5o_A RNA binding motif, sing 99.7 1.9E-17 6.3E-22 137.3 13.1 85 38-123 20-112 (114)
89 2dnq_A RNA-binding protein 4B; 99.7 1.3E-17 4.3E-22 132.8 11.5 79 40-126 5-83 (90)
90 2dis_A Unnamed protein product 99.7 8.1E-18 2.8E-22 138.3 10.7 85 41-125 6-94 (109)
91 2err_A Ataxin-2-binding protei 99.7 6.6E-18 2.3E-22 139.8 10.2 86 36-123 22-107 (109)
92 2cpy_A RNA-binding protein 12; 99.7 5.8E-18 2E-22 141.1 9.7 85 38-124 10-95 (114)
93 2cq1_A PTB-like protein L; RRM 99.7 2.5E-17 8.7E-22 135.4 13.2 83 37-125 9-93 (101)
94 1s79_A Lupus LA protein; RRM, 99.7 4E-18 1.4E-22 140.5 8.4 81 40-122 8-88 (103)
95 1wg5_A Heterogeneous nuclear r 99.7 1.3E-17 4.4E-22 136.8 11.1 84 39-124 11-95 (104)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.2E-18 7.4E-23 140.3 6.3 85 37-123 13-98 (100)
97 2mss_A Protein (musashi1); RNA 99.7 2.4E-18 8.2E-23 132.1 6.2 75 45-120 1-75 (75)
98 1x4d_A Matrin 3; structural ge 99.7 9.3E-18 3.2E-22 138.5 10.1 79 40-124 12-93 (102)
99 2lea_A Serine/arginine-rich sp 99.7 2.7E-18 9.3E-23 147.9 7.1 88 37-124 41-128 (135)
100 2dnp_A RNA-binding protein 14; 99.7 2.7E-17 9.1E-22 130.9 12.2 79 39-125 5-83 (90)
101 2jvr_A Nucleolar protein 3; RN 99.7 8.1E-18 2.8E-22 140.8 9.6 81 39-123 24-105 (111)
102 2nlw_A Eukaryotic translation 99.7 1E-17 3.4E-22 137.7 10.0 84 38-123 10-100 (105)
103 3r27_A HnRNP L, heterogeneous 99.7 1.5E-17 5.1E-22 136.8 10.9 80 38-123 16-97 (100)
104 1wez_A HnRNP H', FTP-3, hetero 99.7 9.3E-18 3.2E-22 137.7 9.7 83 39-124 11-93 (102)
105 2cpd_A Apobec-1 stimulating pr 99.7 6.1E-17 2.1E-21 131.0 14.3 81 37-125 9-91 (99)
106 2e5j_A Methenyltetrahydrofolat 99.7 1.9E-17 6.6E-22 133.6 11.0 82 38-124 14-95 (97)
107 2db1_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 139.9 10.4 84 38-123 12-98 (118)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.1E-18 1.1E-22 131.8 5.7 76 44-120 1-76 (77)
109 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-17 7.3E-22 129.6 10.5 79 37-121 6-85 (85)
110 3q2s_C Cleavage and polyadenyl 99.7 6.1E-18 2.1E-22 158.3 8.6 82 42-123 67-150 (229)
111 1why_A Hypothetical protein ri 99.7 3.5E-17 1.2E-21 132.0 11.8 80 39-124 13-94 (97)
112 2ki2_A SS-DNA binding protein 99.7 2E-18 7E-23 137.1 4.2 81 44-125 2-82 (90)
113 1wex_A Hypothetical protein (r 99.7 2.8E-17 9.6E-22 135.8 11.1 82 38-125 10-93 (104)
114 1x4g_A Nucleolysin TIAR; struc 99.7 3.9E-17 1.3E-21 134.6 11.9 81 39-125 21-101 (109)
115 2cpj_A Non-POU domain-containi 99.7 3.1E-17 1.1E-21 132.7 11.0 81 38-124 10-90 (99)
116 2ad9_A Polypyrimidine tract-bi 99.7 2.4E-17 8.2E-22 139.8 10.6 82 38-125 26-109 (119)
117 2lcw_A RNA-binding protein FUS 99.6 4.9E-19 1.7E-23 147.7 0.0 87 39-125 3-97 (116)
118 1wf1_A RNA-binding protein RAL 99.7 4.9E-17 1.7E-21 134.2 11.6 79 38-124 22-101 (110)
119 1fj7_A Nucleolin RBD1, protein 99.7 2.3E-18 7.7E-23 139.9 3.4 84 40-125 14-97 (101)
120 2cqh_A IGF-II mRNA-binding pro 99.7 3.2E-17 1.1E-21 131.0 10.1 79 40-125 5-85 (93)
121 2wbr_A GW182, gawky, LD47780P; 99.7 4.7E-17 1.6E-21 130.6 10.9 74 42-121 6-79 (89)
122 2dnn_A RNA-binding protein 12; 99.7 2.6E-17 8.8E-22 137.2 9.8 81 40-123 13-93 (109)
123 2hgl_A HNRPF protein, heteroge 99.7 1.8E-17 6.3E-22 143.5 8.7 84 38-123 39-125 (136)
124 2jvo_A Nucleolar protein 3; nu 99.7 3.8E-17 1.3E-21 135.3 10.3 80 37-124 25-104 (108)
125 2a3j_A U1 small nuclear ribonu 99.7 3.7E-17 1.3E-21 139.9 10.5 84 38-124 24-111 (127)
126 2xnq_A Nuclear polyadenylated 99.7 8.9E-17 3E-21 130.4 11.8 78 38-123 17-95 (97)
127 2la4_A Nuclear and cytoplasmic 99.7 3.4E-17 1.1E-21 132.9 9.3 77 40-122 24-100 (101)
128 1nu4_A U1A RNA binding domain; 99.7 2.4E-17 8.3E-22 132.4 8.3 82 40-124 5-90 (97)
129 2kvi_A Nuclear polyadenylated 99.7 2.5E-17 8.5E-22 132.9 8.3 79 39-125 6-85 (96)
130 2hvz_A Splicing factor, argini 99.7 2.8E-17 9.5E-22 133.4 8.6 76 44-124 1-76 (101)
131 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-17 3.6E-22 138.0 5.9 85 37-123 5-92 (107)
132 1fjc_A Nucleolin RBD2, protein 99.7 2.8E-17 9.7E-22 132.0 8.3 82 38-124 11-92 (96)
133 2e5g_A U6 snRNA-specific termi 99.7 9.6E-17 3.3E-21 128.8 11.3 78 42-125 7-84 (94)
134 3lqv_A PRE-mRNA branch site pr 99.7 6.9E-17 2.4E-21 134.0 10.6 82 40-124 5-86 (115)
135 1x5p_A Negative elongation fac 99.7 2.8E-16 9.4E-21 126.8 13.8 81 38-126 10-90 (97)
136 2krb_A Eukaryotic translation 99.7 1.7E-17 5.8E-22 129.6 6.2 73 43-117 1-80 (81)
137 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-17 3.6E-22 128.3 4.8 75 45-120 1-75 (75)
138 4f02_A Polyadenylate-binding p 99.7 1.1E-16 3.6E-21 147.0 12.3 86 38-123 10-95 (213)
139 2e44_A Insulin-like growth fac 99.7 7.4E-17 2.5E-21 129.5 9.7 80 40-123 12-92 (96)
140 2xs2_A Deleted in azoospermia- 99.7 3.2E-17 1.1E-21 133.3 7.0 84 39-125 5-88 (102)
141 3md3_A Nuclear and cytoplasmic 99.7 2.7E-16 9.2E-21 136.2 13.1 83 39-121 83-165 (166)
142 1x4f_A Matrin 3; structural ge 99.7 5.5E-17 1.9E-21 136.1 7.8 80 40-125 22-104 (112)
143 3egn_A RNA-binding protein 40; 99.7 3.3E-17 1.1E-21 141.5 6.1 87 39-125 41-132 (143)
144 1fxl_A Paraneoplastic encephal 99.7 3.3E-16 1.1E-20 135.8 12.4 82 43-124 2-83 (167)
145 1whx_A Hypothetical protein ri 99.7 1.6E-16 5.3E-21 132.1 9.4 77 42-124 9-85 (111)
146 1b7f_A Protein (SXL-lethal pro 99.7 2.9E-16 9.9E-21 136.7 11.6 83 42-124 2-84 (168)
147 2qfj_A FBP-interacting repress 99.7 3.1E-16 1.1E-20 142.1 12.0 85 41-125 123-207 (216)
148 2cq2_A Hypothetical protein LO 99.7 2E-16 6.9E-21 133.1 9.9 81 40-126 22-109 (114)
149 2i2y_A Fusion protein consists 99.7 1.8E-16 6.3E-21 137.8 9.5 82 37-123 67-148 (150)
150 2hgn_A Heterogeneous nuclear r 99.7 2.2E-17 7.7E-22 143.5 3.4 85 38-125 41-125 (139)
151 1l3k_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 140.0 11.0 87 36-123 6-92 (196)
152 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-16 3.7E-21 136.3 7.1 81 41-123 21-105 (123)
153 2yh0_A Splicing factor U2AF 65 99.7 6.1E-16 2.1E-20 138.4 12.3 86 39-124 110-195 (198)
154 2hgm_A HNRPF protein, heteroge 99.7 1.1E-16 3.8E-21 136.9 6.9 83 38-123 37-121 (126)
155 1wg1_A KIAA1579 protein, homol 99.7 3.5E-16 1.2E-20 124.1 9.3 75 42-123 4-78 (88)
156 1l3k_A Heterogeneous nuclear r 99.6 5.8E-16 2E-20 138.3 11.2 86 39-125 100-185 (196)
157 2g4b_A Splicing factor U2AF 65 99.6 5.9E-16 2E-20 135.4 11.0 81 41-121 92-172 (172)
158 1sjr_A Polypyrimidine tract-bi 99.6 7.1E-16 2.4E-20 137.5 10.7 80 41-124 44-125 (164)
159 2j8a_A Histone-lysine N-methyl 99.6 5.3E-16 1.8E-20 132.8 9.0 80 43-122 2-95 (136)
160 3d2w_A TAR DNA-binding protein 99.6 9.3E-16 3.2E-20 122.6 9.9 79 37-124 5-85 (89)
161 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 130.8 11.2 79 41-124 26-107 (130)
162 2e5i_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 127.3 13.2 75 44-124 26-103 (124)
163 2cjk_A Nuclear polyadenylated 99.6 4.5E-16 1.5E-20 135.5 7.9 81 42-123 86-166 (167)
164 2dnl_A Cytoplasmic polyadenyla 99.6 7.3E-16 2.5E-20 128.3 8.8 79 41-122 6-87 (114)
165 2bz2_A Negative elongation fac 99.6 1.2E-15 4.2E-20 129.0 9.5 80 38-125 34-113 (121)
166 1b7f_A Protein (SXL-lethal pro 99.6 2.3E-15 7.7E-20 131.0 11.4 81 40-120 86-168 (168)
167 4f02_A Polyadenylate-binding p 99.6 1.5E-15 5.1E-20 139.3 10.6 80 42-123 102-181 (213)
168 2hzc_A Splicing factor U2AF 65 99.6 1.5E-15 5E-20 119.4 9.0 72 41-119 4-86 (87)
169 1wf0_A TDP-43, TAR DNA-binding 99.6 7.3E-16 2.5E-20 122.0 7.1 78 41-125 3-80 (88)
170 2diu_A KIAA0430 protein; struc 99.6 2.4E-15 8.1E-20 122.0 10.2 74 43-126 9-87 (96)
171 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 138.5 10.8 78 41-123 2-80 (205)
172 2qfj_A FBP-interacting repress 99.6 1.5E-15 5.2E-20 137.6 9.8 83 41-123 26-108 (216)
173 3md3_A Nuclear and cytoplasmic 99.6 3.5E-15 1.2E-19 129.1 11.5 80 44-124 1-80 (166)
174 1fxl_A Paraneoplastic encephal 99.6 3E-15 1E-19 129.6 10.6 81 40-120 85-167 (167)
175 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.9E-19 120.3 11.9 83 41-123 6-94 (105)
176 3nmr_A Cugbp ELAV-like family 99.6 5.5E-15 1.9E-19 129.2 10.4 81 40-121 92-175 (175)
177 3nmr_A Cugbp ELAV-like family 99.6 6.6E-15 2.3E-19 128.6 10.2 83 42-124 2-89 (175)
178 1fje_B Nucleolin RBD12, protei 99.6 7.4E-15 2.5E-19 129.2 10.1 79 40-123 96-174 (175)
179 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4E-19 137.9 11.9 83 39-124 5-91 (282)
180 2cjk_A Nuclear polyadenylated 99.6 5.5E-15 1.9E-19 128.6 8.1 80 42-123 2-81 (167)
181 3pgw_A U1-A; protein-RNA compl 99.5 2.5E-14 8.7E-19 135.6 11.6 78 39-121 203-281 (282)
182 2ghp_A U4/U6 snRNA-associated 99.5 1.7E-14 5.7E-19 137.6 10.4 85 38-123 205-291 (292)
183 2voo_A Lupus LA protein; RNA-b 99.5 2.5E-14 8.7E-19 130.3 10.8 80 42-123 108-187 (193)
184 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6.2E-19 133.5 9.4 81 39-124 30-111 (229)
185 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.7E-18 114.8 13.0 82 39-124 11-103 (112)
186 3smz_A Protein raver-1, ribonu 99.5 6.2E-14 2.1E-18 133.1 12.4 83 42-124 94-176 (284)
187 3smz_A Protein raver-1, ribonu 99.5 4.7E-14 1.6E-18 133.9 11.6 86 39-125 180-266 (284)
188 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.9E-19 135.2 8.7 79 40-124 131-230 (240)
189 1fje_B Nucleolin RBD12, protei 99.5 8.3E-15 2.9E-19 128.8 4.7 84 39-124 9-92 (175)
190 1qm9_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 127.9 7.0 77 43-124 3-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.5 6.3E-14 2.2E-18 128.7 9.0 79 40-120 120-204 (205)
192 2adc_A Polypyrimidine tract-bi 99.5 1.3E-13 4.4E-18 127.8 10.5 79 40-123 148-228 (229)
193 1qm9_A Polypyrimidine tract-bi 99.5 7.5E-14 2.6E-18 125.4 8.7 79 40-123 117-197 (198)
194 3sde_A Paraspeckle component 1 99.5 1.6E-13 5.4E-18 129.7 11.0 79 38-122 17-95 (261)
195 3ue2_A Poly(U)-binding-splicin 99.4 2.4E-13 8.1E-18 114.8 9.4 81 42-122 19-108 (118)
196 3v4m_A Splicing factor U2AF 65 99.4 2.9E-13 9.9E-18 111.7 9.7 83 41-123 3-97 (105)
197 3sde_A Paraspeckle component 1 99.4 2.6E-13 8.9E-18 128.2 10.6 84 42-126 95-182 (261)
198 1jmt_A Splicing factor U2AF 35 99.4 6.5E-14 2.2E-18 115.4 5.0 72 48-120 20-103 (104)
199 2ghp_A U4/U6 snRNA-associated 99.4 2.7E-13 9.4E-18 129.1 9.8 82 42-124 116-198 (292)
200 2g4b_A Splicing factor U2AF 65 99.4 3.7E-13 1.3E-17 117.5 9.7 76 42-124 3-89 (172)
201 2yh0_A Splicing factor U2AF 65 99.4 5.3E-13 1.8E-17 119.2 10.2 75 42-123 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.3E-12 7.8E-17 105.7 11.5 76 43-125 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 1.2E-12 4.2E-17 129.5 9.3 77 39-121 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.9E-16 103.9 10.1 79 40-122 4-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 5.5E-11 1.9E-15 100.8 8.9 79 37-121 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 3.6E-10 1.2E-14 90.8 9.5 75 41-124 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 3.4E-09 1.1E-13 85.6 7.2 73 40-121 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 6E-09 2.1E-13 95.7 8.2 68 55-122 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 9.5E-07 3.3E-11 73.0 10.2 75 40-120 18-97 (117)
210 1wey_A Calcipressin 1; structu 97.8 4.1E-05 1.4E-09 62.7 6.5 76 42-123 4-84 (104)
211 1uw4_A UPF3X; nonsense mediate 97.6 0.00037 1.3E-08 55.8 9.8 79 44-122 2-87 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.5 0.0005 1.7E-08 56.1 9.6 73 42-123 7-84 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.4 0.0006 2.1E-08 57.1 8.6 74 39-120 20-94 (119)
214 1whv_A Poly(A)-specific ribonu 97.1 0.0012 4.2E-08 53.3 7.1 54 44-106 17-70 (100)
215 3ctr_A Poly(A)-specific ribonu 96.8 0.0014 4.9E-08 53.0 5.3 53 45-106 8-60 (101)
216 2l08_A Regulator of nonsense t 96.8 0.0023 8E-08 51.7 6.4 79 43-121 9-94 (97)
217 3p3d_A Nucleoporin 53; structu 96.4 0.0047 1.6E-07 52.5 5.7 78 42-121 6-97 (132)
218 3pgw_S U1-70K; protein-RNA com 95.8 0.15 5.2E-06 51.4 14.7 11 94-104 115-125 (437)
219 3pq1_A Poly(A) RNA polymerase; 95.7 0.0053 1.8E-07 62.7 3.6 55 43-103 53-107 (464)
220 2kn4_A Immunoglobulin G-bindin 95.2 0.015 5E-07 49.6 4.0 35 72-108 2-36 (158)
221 2i2y_A Fusion protein consists 94.9 0.0079 2.7E-07 51.1 1.6 40 82-122 10-50 (150)
222 3d45_A Poly(A)-specific ribonu 87.4 1.1 3.8E-05 46.0 7.5 55 44-107 441-495 (507)
223 2g0c_A ATP-dependent RNA helic 83.8 1.9 6.6E-05 32.1 5.5 68 45-121 2-75 (76)
224 4eyt_A Telomerase associated p 75.4 16 0.00054 28.9 8.3 70 41-118 10-86 (129)
225 3fry_A Probable copper-exporti 58.3 28 0.00094 24.7 6.3 56 43-105 6-61 (73)
226 4e8u_A Putative uncharacterize 48.6 51 0.0017 28.9 7.3 57 44-103 13-81 (172)
227 3dxs_X Copper-transporting ATP 46.7 70 0.0024 22.2 6.9 56 44-105 4-63 (74)
228 3lpe_A Putative transcription 46.6 41 0.0014 26.0 5.9 35 69-108 39-73 (92)
229 2bbd_A Coat protein; archaea, 41.2 16 0.00056 33.2 3.0 78 305-384 92-182 (350)
230 4gim_A Pseudouridine-5'-phosph 40.3 7.4 0.00025 37.6 0.7 38 335-386 149-186 (335)
231 3ts2_A Protein LIN-28 homolog 39.8 4.8 0.00016 34.4 -0.7 28 58-93 2-29 (148)
232 4f25_A Polyadenylate-binding p 39.7 6.1 0.00021 31.4 0.0 19 41-59 95-113 (115)
233 1kvi_A Copper-transporting ATP 38.2 97 0.0033 21.4 7.2 58 42-105 8-69 (79)
234 1vkm_A Conserved hypothetical 37.6 15 0.0005 35.0 2.2 21 359-386 136-156 (297)
235 1yg0_A COP associated protein; 36.0 90 0.0031 20.4 5.9 55 45-105 4-61 (66)
236 2l3m_A Copper-ION-binding prot 35.0 1E+02 0.0034 20.6 7.2 56 44-105 7-66 (71)
237 4ex8_A ALNA; alpha/beta/alpha- 34.5 12 0.00039 36.0 1.0 38 335-386 129-166 (316)
238 2xmw_A PACS-N, cation-transpor 33.2 1.1E+02 0.0036 20.3 6.9 56 44-105 5-63 (71)
239 1q8l_A Copper-transporting ATP 31.1 1.4E+02 0.0048 21.1 7.7 57 43-105 10-70 (84)
240 4a4j_A Pacszia, cation-transpo 30.8 78 0.0027 21.5 4.8 55 44-104 4-61 (69)
241 2kt2_A Mercuric reductase; nme 28.8 1.3E+02 0.0044 19.9 6.4 54 45-104 3-59 (69)
242 1cpz_A Protein (COPZ); copper 27.7 1.3E+02 0.0044 19.6 7.6 54 45-104 3-60 (68)
243 3l82_B F-box only protein 4; T 27.6 24 0.00083 32.3 1.9 16 371-386 63-78 (227)
244 3h7h_B Transcription elongatio 27.5 1.1E+02 0.0037 24.4 5.6 35 69-108 40-74 (106)
245 2kw5_A SLR1183 protein; struct 27.0 22 0.00075 30.2 1.4 36 335-370 32-67 (202)
246 1osd_A MERP, hypothetical prot 26.8 1.4E+02 0.0048 19.8 7.0 56 44-105 5-64 (72)
247 2ofg_X Zinc-transporting ATPas 26.5 2.1E+02 0.007 21.9 7.1 56 44-105 10-69 (111)
248 1aw0_A Menkes copper-transport 26.5 1.2E+02 0.004 20.2 5.1 56 44-105 5-64 (72)
249 3cjk_B Copper-transporting ATP 26.4 1.5E+02 0.0052 20.0 6.8 55 45-105 5-63 (75)
250 1pm4_A YPM; jelly roll fold, t 25.4 24 0.00081 27.7 1.2 49 324-387 7-55 (119)
251 3swz_A Steroid 17-alpha-hydrox 24.5 1.1E+02 0.0037 29.7 6.1 51 45-104 16-70 (494)
252 2g9o_A Copper-transporting ATP 24.4 1.2E+02 0.004 22.2 5.1 56 44-105 5-64 (90)
253 1yjr_A Copper-transporting ATP 23.5 1.7E+02 0.0058 19.5 7.7 57 43-105 5-65 (75)
254 3vhx_B Kinesin-like protein KI 23.3 24 0.00081 29.1 0.8 20 333-363 86-105 (120)
255 1p6t_A Potential copper-transp 22.9 2.1E+02 0.0071 22.5 6.7 55 45-105 77-135 (151)
256 1fvq_A Copper-transporting ATP 22.6 1.7E+02 0.0059 19.3 5.4 55 45-105 5-62 (72)
257 3j21_T 50S ribosomal protein L 22.4 2.2E+02 0.0074 21.9 6.2 56 46-104 25-82 (86)
258 2ew9_A Copper-transporting ATP 22.1 1.7E+02 0.006 22.8 6.1 56 44-105 82-141 (149)
259 1mwy_A ZNTA; open-faced beta-s 22.1 1.9E+02 0.0064 19.5 8.2 56 44-105 5-62 (73)
260 2exu_A Transcription initiatio 22.1 1.3E+02 0.0045 26.8 5.6 27 84-110 148-174 (200)
261 1y3j_A Copper-transporting ATP 20.8 1.4E+02 0.0047 20.4 4.6 55 45-105 6-64 (77)
262 3fut_A Dimethyladenosine trans 20.5 94 0.0032 28.7 4.5 33 43-76 110-142 (271)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=2.1e-22 Score=205.52 Aligned_cols=91 Identities=21% Similarity=0.384 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||+.||+++|+++|.+||.|+.|.|+.++.|+.++|||||+|.+.++|++||+.|||++|+|+.|.|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q 016540 120 ARRRRGRTPTP 130 (387)
Q Consensus 120 Ak~~~~r~~~~ 130 (387)
++......+.+
T Consensus 179 a~~~~~~~~~~ 189 (437)
T 3pgw_S 179 ERGRTVKGWRP 189 (437)
T ss_pred eCCCCCCCCCC
Confidence 99765544433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=156.37 Aligned_cols=82 Identities=34% Similarity=0.492 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
..+++|||+|||+++|+++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 016540 121 RR 122 (387)
Q Consensus 121 k~ 122 (387)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=149.13 Aligned_cols=89 Identities=25% Similarity=0.349 Sum_probs=83.3
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 016540 118 ERARRRRGR 126 (387)
Q Consensus 118 ~~Ak~~~~r 126 (387)
++++++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999877543
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=153.02 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=80.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
+.+.++|||+||++.+++++|+++|.+||+|..|.|+.++.|++++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
|...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9754
No 5
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=149.38 Aligned_cols=89 Identities=29% Similarity=0.399 Sum_probs=83.4
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999987654
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.2e-19 Score=150.99 Aligned_cols=91 Identities=21% Similarity=0.351 Sum_probs=84.2
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCC
Q 016540 117 VERARRRRGRT 127 (387)
Q Consensus 117 V~~Ak~~~~r~ 127 (387)
|++++++....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99998876543
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=144.63 Aligned_cols=85 Identities=32% Similarity=0.445 Sum_probs=81.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
.+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016540 121 RRRRG 125 (387)
Q Consensus 121 k~~~~ 125 (387)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=147.64 Aligned_cols=90 Identities=30% Similarity=0.461 Sum_probs=83.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCC
Q 016540 118 ERARRRRGRT 127 (387)
Q Consensus 118 ~~Ak~~~~r~ 127 (387)
+++++.....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998775433
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=146.98 Aligned_cols=89 Identities=30% Similarity=0.489 Sum_probs=83.4
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|+++++...
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987653
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=3.2e-19 Score=148.26 Aligned_cols=89 Identities=29% Similarity=0.462 Sum_probs=83.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++.+..
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=144.88 Aligned_cols=86 Identities=29% Similarity=0.494 Sum_probs=81.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016540 120 ARRRRG 125 (387)
Q Consensus 120 Ak~~~~ 125 (387)
++++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 988754
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=145.15 Aligned_cols=89 Identities=25% Similarity=0.492 Sum_probs=82.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345577999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEcccCCCCC
Q 016540 118 ERARRRRGRT 127 (387)
Q Consensus 118 ~~Ak~~~~r~ 127 (387)
++++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999775533
No 13
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=147.24 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=84.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC------Ccee
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD------RSVL 110 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln------G~~i 110 (387)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCeEEEEEEcccCCCC
Q 016540 111 EGRIITVERARRRRGR 126 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~~~r 126 (387)
+|+.|.|+++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999876543
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=141.97 Aligned_cols=84 Identities=31% Similarity=0.472 Sum_probs=77.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9864
No 15
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3.3e-19 Score=145.65 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=81.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---eEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG---RII 115 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G---r~I 115 (387)
...+.++|||+|||..+++++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 78899999999999999999999999999998 999
Q ss_pred EEEEcccCCCCC
Q 016540 116 TVERARRRRGRT 127 (387)
Q Consensus 116 ~V~~Ak~~~~r~ 127 (387)
.|++++....+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999876543
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=143.33 Aligned_cols=86 Identities=34% Similarity=0.482 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=146.09 Aligned_cols=88 Identities=31% Similarity=0.534 Sum_probs=82.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
+++++...
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987654
No 18
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=143.71 Aligned_cols=87 Identities=24% Similarity=0.389 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++++++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998764
No 19
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.2e-19 Score=139.31 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=78.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
+++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 016540 123 RR 124 (387)
Q Consensus 123 ~~ 124 (387)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 20
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=152.34 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=83.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......++|||+|||..+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCC
Q 016540 118 ERARRRRGRT 127 (387)
Q Consensus 118 ~~Ak~~~~r~ 127 (387)
++++....+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999775443
No 21
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=145.61 Aligned_cols=88 Identities=26% Similarity=0.460 Sum_probs=81.7
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 445567899999999999999999999999999999999988 888999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 016540 117 VERARRRRGR 126 (387)
Q Consensus 117 V~~Ak~~~~r 126 (387)
|++++++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999987543
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=144.58 Aligned_cols=85 Identities=26% Similarity=0.493 Sum_probs=80.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDV-HLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v-~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.+.++|||+|||+.+++++|+++|.+||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016540 120 ARRRRG 125 (387)
Q Consensus 120 Ak~~~~ 125 (387)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=142.24 Aligned_cols=85 Identities=27% Similarity=0.464 Sum_probs=80.1
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc
Q 016540 117 VERAR 121 (387)
Q Consensus 117 V~~Ak 121 (387)
|++|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.6e-19 Score=140.47 Aligned_cols=82 Identities=32% Similarity=0.507 Sum_probs=78.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cc
Q 016540 120 AR 121 (387)
Q Consensus 120 Ak 121 (387)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 25
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.7e-19 Score=152.26 Aligned_cols=89 Identities=27% Similarity=0.398 Sum_probs=83.2
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34556688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++.+..
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999987654
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=145.75 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=83.3
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVD-PWTRESRGFGFVTMATVEEADRCIKYL-DRSVLEGRI 114 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d-~~tg~srG~aFVeF~s~edA~~Al~~L-nG~~i~Gr~ 114 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ +.++.++|||||+|.+.++|++||+.| |+..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567899999999999999999999999999999999998 789999999999999999999999999 999999999
Q ss_pred EEEEEcccCCCC
Q 016540 115 ITVERARRRRGR 126 (387)
Q Consensus 115 I~V~~Ak~~~~r 126 (387)
|.|+++++....
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999877543
No 27
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=5.7e-19 Score=144.09 Aligned_cols=87 Identities=23% Similarity=0.349 Sum_probs=80.9
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
..+..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456789999999999999999999999997 999999999999999999999999999999999 7999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987654
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=146.19 Aligned_cols=88 Identities=27% Similarity=0.409 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++++++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998764
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=144.67 Aligned_cols=87 Identities=17% Similarity=0.347 Sum_probs=80.6
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWT-RESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~t-g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
+.+..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34455679999999999999999999999999 999999999988 999999999999999999999 899999999999
Q ss_pred EEEEcccCCC
Q 016540 116 TVERARRRRG 125 (387)
Q Consensus 116 ~V~~Ak~~~~ 125 (387)
.|++++++..
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=141.49 Aligned_cols=90 Identities=32% Similarity=0.532 Sum_probs=81.3
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
......+.++|||+|||+.+++++|+++|.+||+|..|.|+.+..+ ++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3455667899999999999999999999999999999999988643 78999999999999999999999999999999
Q ss_pred EEEEcccCCCCC
Q 016540 116 TVERARRRRGRT 127 (387)
Q Consensus 116 ~V~~Ak~~~~r~ 127 (387)
.|++++++....
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cq3_A 86 EVNNATARVMTN 97 (103)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcccCCCCC
Confidence 999998875443
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=146.10 Aligned_cols=83 Identities=18% Similarity=0.345 Sum_probs=76.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEEc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD-RSVLEGRIITVERA 120 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln-G~~i~Gr~I~V~~A 120 (387)
.++|||+|||+.+|+++|+++|.+|| +|..|.|+.++.|+.++|||||+|.+.++|++||+.|+ +..|+|++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCC
Q 016540 121 RRRRG 125 (387)
Q Consensus 121 k~~~~ 125 (387)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=146.87 Aligned_cols=88 Identities=24% Similarity=0.408 Sum_probs=82.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeE--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVI--------DVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV 109 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~--------~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~ 109 (387)
....+.++|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4556789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEcccCCC
Q 016540 110 LEGRIITVERARRRRG 125 (387)
Q Consensus 110 i~Gr~I~V~~Ak~~~~ 125 (387)
|+|+.|.|++++.+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=3.5e-19 Score=145.74 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=82.8
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCe
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL---EGR 113 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i---~Gr 113 (387)
+..+.+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..| +|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred EEEEEEcccCCC
Q 016540 114 IITVERARRRRG 125 (387)
Q Consensus 114 ~I~V~~Ak~~~~ 125 (387)
.|.|+++.....
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=5.5e-19 Score=142.38 Aligned_cols=83 Identities=19% Similarity=0.413 Sum_probs=79.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.1e-19 Score=145.90 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=83.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987643
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=143.30 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=79.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPW---TRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~---tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.+.++|||+|||+.+++++|+++|.+||+|..|.|+.++. |+.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998876 6688999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=144.73 Aligned_cols=88 Identities=31% Similarity=0.444 Sum_probs=81.9
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
.+..+.+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|+|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345566789999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EEEEcccCC
Q 016540 116 TVERARRRR 124 (387)
Q Consensus 116 ~V~~Ak~~~ 124 (387)
.|++++...
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999998653
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-18 Score=140.33 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=79.6
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+..+ ++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 445667899999999999999999999999999999999988644 589999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999987654
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=146.48 Aligned_cols=84 Identities=19% Similarity=0.405 Sum_probs=77.9
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCC--eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGK--VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS----VLEG 112 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~--I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~----~i~G 112 (387)
....-.+|||+|||+.+|+++|+++|++||. |..|.|+.|+.||.++|||||+|.+.++|++||+.|||. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4556789999999999999999999999995 678999999999999999999999999999999999996 5999
Q ss_pred eEEEEEEccc
Q 016540 113 RIITVERARR 122 (387)
Q Consensus 113 r~I~V~~Ak~ 122 (387)
++|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 40
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=147.57 Aligned_cols=84 Identities=29% Similarity=0.534 Sum_probs=79.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.++.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCC
Q 016540 120 ARRRR 124 (387)
Q Consensus 120 Ak~~~ 124 (387)
++...
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98654
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=142.85 Aligned_cols=86 Identities=22% Similarity=0.333 Sum_probs=81.0
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVID--------VHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR 107 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~--------v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG 107 (387)
......+.++|||+|||.++++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+.++|++||+.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3455677899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ceeCCeEEEEEEcc
Q 016540 108 SVLEGRIITVERAR 121 (387)
Q Consensus 108 ~~i~Gr~I~V~~Ak 121 (387)
..|+|+.|.|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=143.21 Aligned_cols=87 Identities=20% Similarity=0.420 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeE-EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE--
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVI-DVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI-- 114 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~-~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~-- 114 (387)
....+.++|||+|||+.+++++|+++|.+||+|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4456789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred --EEEEEcccCC
Q 016540 115 --ITVERARRRR 124 (387)
Q Consensus 115 --I~V~~Ak~~~ 124 (387)
|.|++|+...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998653
No 43
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=7.4e-19 Score=144.04 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||+.+++++|+++|.+||+|+.|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4456678999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEcc
Q 016540 117 VERAR 121 (387)
Q Consensus 117 V~~Ak 121 (387)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 44
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=141.95 Aligned_cols=87 Identities=25% Similarity=0.388 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3445678999999999999999999999999999999999987 588999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99997653
No 45
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=140.70 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 38 DAENPGNNLYVTGLSPRITKRELE----KHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~----~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
.+....++|||+|||+.+++++|+ ++|.+||+|..|.|+.++.+ +|||||+|.+.++|++||+.|||..|+|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 445567899999999999999999 99999999999999988766 78999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 016540 114 IITVERARRRR 124 (387)
Q Consensus 114 ~I~V~~Ak~~~ 124 (387)
.|.|++|++..
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999998664
No 46
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.5e-18 Score=152.12 Aligned_cols=87 Identities=22% Similarity=0.388 Sum_probs=82.2
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
++|++..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998754
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.2e-19 Score=144.92 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=73.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcC--CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEG--KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G--~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.+|||+|||+++++++|+++|.+|| +|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 016540 122 RRRG 125 (387)
Q Consensus 122 ~~~~ 125 (387)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 48
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=3.9e-19 Score=152.09 Aligned_cols=88 Identities=34% Similarity=0.495 Sum_probs=82.7
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|+++++++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 49
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=141.36 Aligned_cols=86 Identities=28% Similarity=0.415 Sum_probs=77.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ +.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567799999999999999999999999999999999554 45789999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999987654
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=143.35 Aligned_cols=87 Identities=28% Similarity=0.400 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987754
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=138.20 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=77.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRE-SRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~-srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
..++|||+|||..+++++|+++|.+||+|..|.|+.+..++. ++|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887765 8999999999999999999999999999999999999
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.6e-18 Score=136.82 Aligned_cols=83 Identities=31% Similarity=0.590 Sum_probs=77.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+..+.+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999997 688999999999
Q ss_pred EEEc
Q 016540 117 VERA 120 (387)
Q Consensus 117 V~~A 120 (387)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 53
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=1.1e-18 Score=145.92 Aligned_cols=82 Identities=29% Similarity=0.542 Sum_probs=75.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||+.+++++|+++|.+||+|..|.|+.+.. .++|||||+|.+.++|++||+.|+|..|+|+.|.|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 357899999999999999999999999999999998863 378999999999999999999999999999999999998
Q ss_pred cCCC
Q 016540 122 RRRG 125 (387)
Q Consensus 122 ~~~~ 125 (387)
.+..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7644
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.7e-19 Score=146.02 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=79.7
Q ss_pred CCCCCEEEEecCCC------CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 016540 40 ENPGNNLYVTGLSP------RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG- 112 (387)
Q Consensus 40 ~~~~~~LfVgnLp~------~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G- 112 (387)
+...++|||+|||. .+++++|+++|.+||.|..|.|+.++.||.++|||||+|.+.++|++||+.|||..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcccC
Q 016540 113 RIITVERARRR 123 (387)
Q Consensus 113 r~I~V~~Ak~~ 123 (387)
+.|.|.+|.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999764
No 55
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=139.68 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=78.3
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++. +.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34456779999999999999999999999999999999999885 88999999999999999999999999999999999
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 56
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=7.6e-19 Score=141.74 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=79.5
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.....++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 57
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=6.9e-19 Score=146.87 Aligned_cols=85 Identities=25% Similarity=0.381 Sum_probs=79.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc
Q 016540 117 VERAR 121 (387)
Q Consensus 117 V~~Ak 121 (387)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=144.74 Aligned_cols=87 Identities=29% Similarity=0.444 Sum_probs=82.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|++++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999865
No 59
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-19 Score=145.20 Aligned_cols=84 Identities=30% Similarity=0.484 Sum_probs=79.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
+...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cccCC
Q 016540 120 ARRRR 124 (387)
Q Consensus 120 Ak~~~ 124 (387)
++.+.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 98654
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=141.59 Aligned_cols=86 Identities=23% Similarity=0.371 Sum_probs=80.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhh-cCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAA-EGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV-LEGRIIT 116 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k-~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~-i~Gr~I~ 116 (387)
...+.++|||+|||+++++++|+++|.+ ||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||+.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|+++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999986643
No 61
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-18 Score=137.90 Aligned_cols=87 Identities=26% Similarity=0.440 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 4455678899999999999999999999999999999999999999999999999999999999999 57899999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|+++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987654
No 62
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-18 Score=138.93 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=72.9
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-----e
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG-----R 113 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G-----r 113 (387)
.....++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+.+|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456899999999999999999999999999999999765 799999999999999999999999999 9
Q ss_pred EEEEEEcccC
Q 016540 114 IITVERARRR 123 (387)
Q Consensus 114 ~I~V~~Ak~~ 123 (387)
.|.|++|+++
T Consensus 84 ~i~V~~a~~~ 93 (108)
T 1x4c_A 84 YIRVKVDGPR 93 (108)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999999874
No 63
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2.5e-18 Score=152.37 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=82.1
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|.|+..+..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999987643
No 64
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2.4e-18 Score=137.02 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=78.1
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||..+++++|+++|.+||+|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 78889999999999999999999999999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
++++..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998764
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.9e-18 Score=135.58 Aligned_cols=81 Identities=28% Similarity=0.501 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999999999999999999999999999 899999999999999997
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-19 Score=144.14 Aligned_cols=86 Identities=23% Similarity=0.424 Sum_probs=81.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.+.+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
++....
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 998764
No 67
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=152.19 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=77.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcC--CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEG--KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G--~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...++|||+|||+++++++|+++|.+|| +|..|.|+.|+.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
+|.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99754
No 68
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=6.1e-18 Score=142.61 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=82.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.+. +|.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 355678999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 016540 118 ERARRRRGR 126 (387)
Q Consensus 118 ~~Ak~~~~r 126 (387)
++|......
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 69
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=1.1e-18 Score=146.07 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE-----E
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI-----I 115 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~-----I 115 (387)
...++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|++.++|++||+.|||.+|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35789999999999999999999999999999999754 89999999999999999999999999998 5
Q ss_pred EEEEcc
Q 016540 116 TVERAR 121 (387)
Q Consensus 116 ~V~~Ak 121 (387)
+|+.+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555444
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=8.9e-19 Score=140.38 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 33468999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccc
Q 016540 120 ARR 122 (387)
Q Consensus 120 Ak~ 122 (387)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 863
No 71
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=144.71 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=80.5
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||+++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345568999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EcccCCC
Q 016540 119 RARRRRG 125 (387)
Q Consensus 119 ~Ak~~~~ 125 (387)
+++++..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987754
No 72
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=141.70 Aligned_cols=86 Identities=23% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHH---HHhhhcCCeEEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 016540 39 AENPGNNLYVTGLSPRITKRELE---KHFAAEGKVIDVHLVVDPWTR---ESRGFGFVTMATVEEADRCIKYLDRSVLEG 112 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~---~~F~k~G~I~~v~i~~d~~tg---~srG~aFVeF~s~edA~~Al~~LnG~~i~G 112 (387)
...+.++|||+|||+.+++++|+ ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999887754 455999999999999999999999999999
Q ss_pred eEEEEEEcccCC
Q 016540 113 RIITVERARRRR 124 (387)
Q Consensus 113 r~I~V~~Ak~~~ 124 (387)
+.|.|++|+++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 73
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=136.93 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=76.2
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3455678999999999999999999999999987 45555 6788999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++++++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987643
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3.4e-18 Score=141.66 Aligned_cols=87 Identities=31% Similarity=0.497 Sum_probs=77.0
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
+...+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=134.19 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=77.8
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.....++|||+|||+.+++++|+++|.+| .|..|.|+.+ .+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
+++.+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998763
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=149.10 Aligned_cols=88 Identities=25% Similarity=0.445 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----ee
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVID--VHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS----VL 110 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~--v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~----~i 110 (387)
+....+.++|||+|||+++++++|+++|.+||.|.. |.|+.++.||.++|||||+|.+. +|++||+.|||. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567889999999999999999999999999976 99999999999999999999999 999999999999 99
Q ss_pred CCeEEEEEEcccCCC
Q 016540 111 EGRIITVERARRRRG 125 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~~~ 125 (387)
+|+.|.|+++++...
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987643
No 77
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=143.18 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=77.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||.|..|.+..+..++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456789999999999999999999999999994332222222777899999999999999999999999999999999
Q ss_pred EEEcccCCCCC
Q 016540 117 VERARRRRGRT 127 (387)
Q Consensus 117 V~~Ak~~~~r~ 127 (387)
|++++.+....
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=5.9e-18 Score=148.03 Aligned_cols=88 Identities=33% Similarity=0.466 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......++|||+|||+.+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
+++++...
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99987643
No 79
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=146.88 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=77.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+....++|||+|||+.+++++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567999999999999999999999999999987777777799999999999999999999999 99999999999999
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99764
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=143.97 Aligned_cols=84 Identities=31% Similarity=0.491 Sum_probs=78.8
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 016540 117 VERA 120 (387)
Q Consensus 117 V~~A 120 (387)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 81
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=1e-17 Score=150.91 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=79.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||+.+++++|+++|.+||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
+|...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99765
No 82
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.9e-17 Score=135.11 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 344567899999999999999999999999999999985 569999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
+++++...
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99987654
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=6.4e-18 Score=142.15 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=78.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 799999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 84
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=132.57 Aligned_cols=80 Identities=29% Similarity=0.493 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345668999999999999999999999999999999985 459999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++++..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99987654
No 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=136.07 Aligned_cols=85 Identities=27% Similarity=0.493 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+|+ .|.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455789999999999999999999999774 5778888889999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-19 Score=137.92 Aligned_cols=81 Identities=23% Similarity=0.467 Sum_probs=76.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
.+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred c
Q 016540 121 R 121 (387)
Q Consensus 121 k 121 (387)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=140.77 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=73.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR--SVLEGRIIT 116 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG--~~i~Gr~I~ 116 (387)
...+.++|||+|||+.+++++|+++|.+||+|+.|.|+.+ +|||||+|++.++|++||+.|++ .+|+|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4557899999999999999999999999999999999865 69999999999999999998864 789999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++|+.+..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987643
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=137.32 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-------
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL------- 110 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i------- 110 (387)
..+.+.++|||+|||+.+++++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445677999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred -CCeEEEEEEcccC
Q 016540 111 -EGRIITVERARRR 123 (387)
Q Consensus 111 -~Gr~I~V~~Ak~~ 123 (387)
.+++|.|.||.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999854
No 89
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=132.79 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=73.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||.++++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016540 120 ARRRRGR 126 (387)
Q Consensus 120 Ak~~~~r 126 (387)
++.+...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.1e-18 Score=138.26 Aligned_cols=85 Identities=24% Similarity=0.299 Sum_probs=78.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCC-eEEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGK-VIDVHLV-VDPWTRESRGFGFVTMATVEEADRCIKYLD--RSVLEGRIIT 116 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~-I~~v~i~-~d~~tg~srG~aFVeF~s~edA~~Al~~Ln--G~~i~Gr~I~ 116 (387)
.+.++|||+|||+.+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|++||+.|+ +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++|+++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=139.82 Aligned_cols=86 Identities=34% Similarity=0.593 Sum_probs=78.6
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..+.....++|||+|||..+++++|+++|.+||+|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556678999999999999999999999999999999998885 3479999999999999999999999999999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|++++++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999865
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=141.10 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=78.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCe-EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKV-IDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I-~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+...+.++|||+|||+.+++++|+++|.+||.| ..|.|+.++ ++.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 445667899999999999999999999999999 889999998 999999999999999999999996 99999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998653
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=135.44 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=74.2
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL--DRSVLEGRI 114 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L--nG~~i~Gr~ 114 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ +|||||+|++.++|++||+.| ++..|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567899999999999999999999999999999988754 799999999999999999977 467899999
Q ss_pred EEEEEcccCCC
Q 016540 115 ITVERARRRRG 125 (387)
Q Consensus 115 I~V~~Ak~~~~ 125 (387)
|.|++++.+..
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999987654
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=140.46 Aligned_cols=81 Identities=12% Similarity=0.288 Sum_probs=76.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+|||+++|+++|+++|.+||+|..|.|+.++. +.++|||||+|.+.++|++||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999987 9999999999999999999999 999999999999999
Q ss_pred ccc
Q 016540 120 ARR 122 (387)
Q Consensus 120 Ak~ 122 (387)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 864
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=136.78 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=77.2
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVID-VHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~-v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999997 888888 7899999999999999999999996 999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987654
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=140.32 Aligned_cols=85 Identities=19% Similarity=0.354 Sum_probs=75.2
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDP-WTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~-~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
.......++|||+|||.++++++|+++|.+|| |..|.|+.++ .+|.++|||||+|.+.++|++|| .|||..|+|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34566789999999999999999999999999 9999999998 68999999999999999999999 899999999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|++++++
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999865
No 97
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=2.4e-18 Score=132.07 Aligned_cols=75 Identities=28% Similarity=0.504 Sum_probs=72.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
+|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999875
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=138.46 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEE
Q 016540 40 ENPGNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS--VLEGRIIT 116 (387)
Q Consensus 40 ~~~~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~--~i~Gr~I~ 116 (387)
..+.++|||+|||+ .+++++|+++|.+||+|..|.|+.+ +|||||+|++.++|++||+.||+. .|+|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44788999999999 9999999999999999999999765 589999999999999999999864 59999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++|+...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998653
No 99
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2.7e-18 Score=147.87 Aligned_cols=88 Identities=33% Similarity=0.482 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556688999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|+++++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=130.87 Aligned_cols=79 Identities=25% Similarity=0.449 Sum_probs=72.9
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999995 4599999999999999999999999999999999
Q ss_pred EcccCCC
Q 016540 119 RARRRRG 125 (387)
Q Consensus 119 ~Ak~~~~ 125 (387)
++++...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 101
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=8.1e-18 Score=140.82 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.....++|||+|||+++++++|+++|.+|| +|..|.|+.+ .++|||||+|.+.++|++||+.|||.+|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999988543 36899999999999999999999999999999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
++++..
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 999743
No 102
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=137.66 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEecCCCCC------CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 016540 38 DAENPGNNLYVTGLSPRI------TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE 111 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~------te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~ 111 (387)
......++|||+|||+.+ ++++|+++|.+||.|..|.|+ ..+|.++|||||+|.+.++|++||+.|||..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 445567899999999999 789999999999999999987 468889999999999999999999999999999
Q ss_pred Ce-EEEEEEcccC
Q 016540 112 GR-IITVERARRR 123 (387)
Q Consensus 112 Gr-~I~V~~Ak~~ 123 (387)
|+ .|.|+++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999999754
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=136.82 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV--LEGRII 115 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~--i~Gr~I 115 (387)
....+..+|||+|||+.+++++|.++|.+||+|..|.|+. .+|||||+|++.++|++||+.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4456789999999999999999999999999999999875 37899999999999999999999875 889999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999865
No 104
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=137.73 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.....++|||+|||+++++++|+++|.+||. +.|.|+.++ +++++|||||+|.+.++|++||+ +|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 599999998 89999999999999999999996 89999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 988654
No 105
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-17 Score=131.04 Aligned_cols=81 Identities=30% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhc--CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAE--GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~--G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
.+...+.++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445668899999999999999999999999 999998873 679999999999999999999999999999
Q ss_pred EEEEEcccCCC
Q 016540 115 ITVERARRRRG 125 (387)
Q Consensus 115 I~V~~Ak~~~~ 125 (387)
|.|++++++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=133.63 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......++|||+|||+.+++++|+++|.+||.|. +.++.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999997 666654 46899999999999999999999999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
++++++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998764
No 107
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.5e-17 Score=139.86 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCC---eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGK---VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~---I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
......++|||+|||+++|+++|+++|.+||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 33456789999999999999999999999999 89999999986 8899999999999999999999 9999999999
Q ss_pred EEEEEcccC
Q 016540 115 ITVERARRR 123 (387)
Q Consensus 115 I~V~~Ak~~ 123 (387)
|.|.+++.+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999754
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-18 Score=131.76 Aligned_cols=76 Identities=30% Similarity=0.491 Sum_probs=73.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 9999999999987
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=129.60 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=72.7
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL-DRSVLEGRII 115 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L-nG~~i~Gr~I 115 (387)
+....+.++|||+|||..+++++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.| ++..|+|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 344567789999999999999999999999999999999863 799999999999999999999 9999999999
Q ss_pred EEEEcc
Q 016540 116 TVERAR 121 (387)
Q Consensus 116 ~V~~Ak 121 (387)
.|++|+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999985
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=6.1e-18 Score=158.35 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcC--CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEG--KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G--~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..++|||+||+++||+++|+++|.+|| +|+.|.|+.++.|++++|||||+|.+.++|++||+.||+.+|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9753
No 111
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=131.97 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=73.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE--GRIIT 116 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~--Gr~I~ 116 (387)
...+.++|||+|||..+++++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.||+..|+ |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998754 689999999999999999999999999 99999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2e-18 Score=137.07 Aligned_cols=81 Identities=33% Similarity=0.544 Sum_probs=74.3
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.+ |++|++.|||..|+|+.|.|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred CC
Q 016540 124 RG 125 (387)
Q Consensus 124 ~~ 125 (387)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 113
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=135.82 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS--VLEGRII 115 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~--~i~Gr~I 115 (387)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ +|||||+|++.++|++||+.|++. .|+|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567899999999999999999999999999999988753 789999999999999999988764 5999999
Q ss_pred EEEEcccCCC
Q 016540 116 TVERARRRRG 125 (387)
Q Consensus 116 ~V~~Ak~~~~ 125 (387)
.|++++.+..
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999987654
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=134.62 Aligned_cols=81 Identities=17% Similarity=0.462 Sum_probs=75.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred EcccCCC
Q 016540 119 RARRRRG 125 (387)
Q Consensus 119 ~Ak~~~~ 125 (387)
+++....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987643
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=132.74 Aligned_cols=81 Identities=31% Similarity=0.442 Sum_probs=74.5
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456789999999999999999999999999999999754 789999999999999999999999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
++++.+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998764
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=139.75 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR--SVLEGRII 115 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG--~~i~Gr~I 115 (387)
....+.++|||+|||+.+++++|+++|++||+|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|+|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999865 79999999999999999999884 68999999
Q ss_pred EEEEcccCCC
Q 016540 116 TVERARRRRG 125 (387)
Q Consensus 116 ~V~~Ak~~~~ 125 (387)
.|++|+.+..
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-19 Score=147.69 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=81.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVID--------VHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~--------v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
...+.++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 89999988999999999999999999999999999999
Q ss_pred CCeEEEEEEcccCCC
Q 016540 111 EGRIITVERARRRRG 125 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~~~ 125 (387)
+|+.|.|++++++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987654
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=4.9e-17 Score=134.23 Aligned_cols=79 Identities=19% Similarity=0.410 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 38 DAENPGNNLYVTGLSPR-ITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~-~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
++....++|||+|||+. +++++|+++|.+||+|..|.| ++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34556789999999999 999999999999999999988 478999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++++...
T Consensus 94 V~~a~~~~ 101 (110)
T 1wf1_A 94 INMAGEPK 101 (110)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998543
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-18 Score=139.86 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||+.+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999887 666777788899999999999999999999 999999999999999
Q ss_pred cccCCC
Q 016540 120 ARRRRG 125 (387)
Q Consensus 120 Ak~~~~ 125 (387)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987643
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=131.01 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=70.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCC-eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGK-VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR-SVLEGRIITV 117 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~-I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG-~~i~Gr~I~V 117 (387)
..+.++|||+|||+++++++|+++|.+||. |..+.+. ++|||||+|.+.++|++||+.||| ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 446789999999999999999999999999 5555552 478999999999999999999999 9999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987654
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.7e-17 Score=130.64 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=70.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
....|||+||++.+||++|+++|.+||+|+.+.|+. ++|||||+|.+.++|++||+.||+.+|.|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 48999999999999999999999999999999999995
No 122
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=137.23 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=74.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+|||+.+++++|+++|.+| .|..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3346799999999999999999999999 899999999975 889999999999999999999 5999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
+...
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8754
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.8e-17 Score=143.46 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCC---eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGK---VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~---I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
......++|||+|||+++|+++|+++|.+||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 88999999987 9999999999999999999999 9999999999
Q ss_pred EEEEEcccC
Q 016540 115 ITVERARRR 123 (387)
Q Consensus 115 I~V~~Ak~~ 123 (387)
|.|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998754
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.8e-17 Score=135.30 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
...+.+.++|||+|||..+++++|+++|.+||+|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4556778999999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|++++...
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99998764
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=139.89 Aligned_cols=84 Identities=15% Similarity=0.380 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 38 DAENPGNNLYVTGLSPRITKRELE----KHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~----~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
....+.++|||+|||+.+++++|+ ++|++||+|..|.|. .++.++|||||+|.+.++|+.||+.|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 344568899999999999999876 699999999998874 3677899999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 016540 114 IITVERARRRR 124 (387)
Q Consensus 114 ~I~V~~Ak~~~ 124 (387)
+|.|+||+.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998653
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8.9e-17 Score=130.38 Aligned_cols=78 Identities=15% Similarity=0.390 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 38 DAENPGNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
....+.++|||+|||+ .+++++|+++|.+||.|..|.| .+|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456789999999998 9999999999999999999998 378999999999999999999999999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|++++..
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999764
No 127
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.4e-17 Score=132.88 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+|||..+++++|+++|.+||.|..|.|+. ++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34578999999999999999999999999999999873 479999999999999999999999999999999999
Q ss_pred ccc
Q 016540 120 ARR 122 (387)
Q Consensus 120 Ak~ 122 (387)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.4e-17 Score=132.45 Aligned_cols=82 Identities=21% Similarity=0.425 Sum_probs=74.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELE----KHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~----~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|+.|++.|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 9999999999998863 56678999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 016540 116 TVERARRRR 124 (387)
Q Consensus 116 ~V~~Ak~~~ 124 (387)
.|+++++..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.5e-17 Score=132.90 Aligned_cols=79 Identities=16% Similarity=0.387 Sum_probs=71.6
Q ss_pred CCCCCCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 39 AENPGNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
...+.++|||+|||+ .+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345788999999999 99999999999999999999983 789999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987643
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=133.36 Aligned_cols=76 Identities=28% Similarity=0.422 Sum_probs=72.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
++|||+|||+.+++++|+++|.+||+|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5899999999999999999999999999999999999876
Q ss_pred C
Q 016540 124 R 124 (387)
Q Consensus 124 ~ 124 (387)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=138.01 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCC---eEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGK---VIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~---I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
.......++|||+|||+++|+++|+++|.+||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345567899999999999999999999999998 89999999987 9999999999999999999999 999999999
Q ss_pred EEEEEEcccC
Q 016540 114 IITVERARRR 123 (387)
Q Consensus 114 ~I~V~~Ak~~ 123 (387)
.|.|.++...
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999999754
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=131.96 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|||+.+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 346778999999999999999999999999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
+++.++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998764
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=128.79 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||+++++++|+++|.+||+|..| +.++.++. ||||+|.+.++|++||+ ||+..|+|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 56666664 99999999999999999 99999999999999887
Q ss_pred cCCC
Q 016540 122 RRRG 125 (387)
Q Consensus 122 ~~~~ 125 (387)
.+..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6543
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=6.9e-17 Score=134.04 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=75.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. .++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998653 4589999999999999999999999999999999999
Q ss_pred cccCC
Q 016540 120 ARRRR 124 (387)
Q Consensus 120 Ak~~~ 124 (387)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98643
No 135
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=126.81 Aligned_cols=81 Identities=31% Similarity=0.440 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|| .+++++|+++|.+||+|..|.|. .++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999984 25899999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 016540 118 ERARRRRGR 126 (387)
Q Consensus 118 ~~Ak~~~~r 126 (387)
++++++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 136
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=129.61 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCC------CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 016540 43 GNNLYVTGLSPRI------TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR-II 115 (387)
Q Consensus 43 ~~~LfVgnLp~~~------te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr-~I 115 (387)
.++|||+|||..+ ++++|+++|.+||+|..|.|+ +.+|.++|||||+|.+.++|++||+.|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999887 46888999999999999999999999999999999 88
Q ss_pred EE
Q 016540 116 TV 117 (387)
Q Consensus 116 ~V 117 (387)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.1e-17 Score=128.29 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=71.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
+|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999 5999999999999875
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.1e-16 Score=147.00 Aligned_cols=86 Identities=24% Similarity=0.503 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.+..+.++|||+|||+++++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..+.|+.|.|
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
.++...
T Consensus 90 ~~~~~~ 95 (213)
T 4f02_A 90 MWSQRD 95 (213)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 998754
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=129.51 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDV-HLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v-~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
....++|||+|||+.+++++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 588877554 49999999999999999999999999999999
Q ss_pred EcccC
Q 016540 119 RARRR 123 (387)
Q Consensus 119 ~Ak~~ 123 (387)
+++++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=3.2e-17 Score=133.26 Aligned_cols=84 Identities=24% Similarity=0.482 Sum_probs=77.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.+...++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+ ++..|+|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999 9999999999999
Q ss_pred EcccCCC
Q 016540 119 RARRRRG 125 (387)
Q Consensus 119 ~Ak~~~~ 125 (387)
++..+..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9986643
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.7e-16 Score=136.16 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=79.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||..+++++|+++|.+||.|..+.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-17 Score=136.10 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 016540 40 ENPGNNLYVTGLSPR-ITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR--SVLEGRIIT 116 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~-~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG--~~i~Gr~I~ 116 (387)
..+.++|||+|||++ +++++|+++|.+||+|..|.|+. .+|||||+|++.++|++||+.|++ ..|+|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556899999999998 99999999999999999999974 379999999999999999998864 569999999
Q ss_pred EEEcccCCC
Q 016540 117 VERARRRRG 125 (387)
Q Consensus 117 V~~Ak~~~~ 125 (387)
|++|+.+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999986644
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=3.3e-17 Score=141.45 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=74.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEE--E---eeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVH--L---VVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR 113 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~--i---~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr 113 (387)
...+.++|||+|||+.+++++|+++|.+||.|..|. + +....++.++|||||+|.+.++|++||+.|||..|+|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356789999999999999999999999999987641 0 11123677899999999999999999999999999999
Q ss_pred EEEEEEcccCCC
Q 016540 114 IITVERARRRRG 125 (387)
Q Consensus 114 ~I~V~~Ak~~~~ 125 (387)
.|.|++|+....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 144
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=3.3e-16 Score=135.77 Aligned_cols=82 Identities=30% Similarity=0.445 Sum_probs=78.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
.++|||+|||+.+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|+|..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred CC
Q 016540 123 RR 124 (387)
Q Consensus 123 ~~ 124 (387)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=132.14 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||+.+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|++||+.|||..|+|+.|.|+||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998864 47899999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 653
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=2.9e-16 Score=136.67 Aligned_cols=83 Identities=29% Similarity=0.368 Sum_probs=79.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++|++.|+|..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=3.1e-16 Score=142.14 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=80.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
...++|||+|||..+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016540 121 RRRRG 125 (387)
Q Consensus 121 k~~~~ 125 (387)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 148
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=133.07 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=72.2
Q ss_pred CCCCCEEEE--ecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 016540 40 ENPGNNLYV--TGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL-----EG 112 (387)
Q Consensus 40 ~~~~~~LfV--gnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i-----~G 112 (387)
..++.+||| +||++.+++++|+++|++||+|..|.|+. .+|||||+|.+.++|++|++.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 77999999999999999999999988753 278999999999999999999999998 68
Q ss_pred eEEEEEEcccCCCC
Q 016540 113 RIITVERARRRRGR 126 (387)
Q Consensus 113 r~I~V~~Ak~~~~r 126 (387)
.+|.|.+++...+.
T Consensus 96 ~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 96 ITLYLNFVEKVQWS 109 (114)
T ss_dssp EECEEEEESCCCCS
T ss_pred cEEEEEecccCccc
Confidence 99999999865443
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=1.8e-16 Score=137.79 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ ++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567899999999999999999999999999999999876 489999999999999999999999999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|++++++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999865
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=2.2e-17 Score=143.46 Aligned_cols=85 Identities=22% Similarity=0.269 Sum_probs=75.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......++|||+|||+++||++|+++|.+|| |+.|.|+.++. ++++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3455678999999999999999999999999 77999999976 999999999999999999999 69999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
.++.....
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99987643
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=3.1e-16 Score=140.05 Aligned_cols=87 Identities=38% Similarity=0.586 Sum_probs=79.3
Q ss_pred CCCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 36 SSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 36 s~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
.+......++|||+|||+++++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEe
Confidence 34556678999999999999999999999999999999999999999999999999999999999998 59999999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|.++...
T Consensus 85 ~v~~~~~~ 92 (196)
T 1l3k_A 85 EPKRAVSR 92 (196)
T ss_dssp EEEECCC-
T ss_pred eeecccCc
Confidence 99998754
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=136.32 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCe----EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKV----IDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I----~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
...++|||+|||+++|+++|+++|.+||+| ..|.|+.+. +|+++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 689999884 899999999999999999999995 99999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988754
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=6.1e-16 Score=138.35 Aligned_cols=86 Identities=21% Similarity=0.362 Sum_probs=81.5
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
+++++.
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.1e-16 Score=136.92 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeE--EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVI--DVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~--~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
......++|||+|||+++|+++|+++|.+| .|+ .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 344567899999999999999999999999 677 899999987 9999999999999999999999 57899999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|..+..+
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988654
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=3.5e-16 Score=124.13 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||+.+++++|+++|.+| +|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999884 368999999999999999999999999999999999997
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=5.8e-16 Score=138.31 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=76.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|+|+.|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred EcccCCC
Q 016540 119 RARRRRG 125 (387)
Q Consensus 119 ~Ak~~~~ 125 (387)
+|.++..
T Consensus 179 ~a~~k~~ 185 (196)
T 1l3k_A 179 KALSKQE 185 (196)
T ss_dssp ECC----
T ss_pred ecCChhH
Confidence 9988754
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=5.9e-16 Score=135.44 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=77.6
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
...++|||+|||..+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999989999999999999999999999999999999999999997
Q ss_pred c
Q 016540 121 R 121 (387)
Q Consensus 121 k 121 (387)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.1e-16 Score=137.51 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG--RIITVE 118 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V~ 118 (387)
....+|||+||++.+++++|+++|++||+|+.|.|+.+. ++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345679999999999999999999999999999987543 47899999999999999999999999965 999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998763
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.3e-16 Score=132.85 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCEEEEecC----CCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCc
Q 016540 43 GNNLYVTGL----SPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT----VEE----ADRCIK--YLDRS 108 (387)
Q Consensus 43 ~~~LfVgnL----p~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s----~ed----A~~Al~--~LnG~ 108 (387)
.++|||+|| |+.|++++|+++|..||+|..|.++.|+.||.++|||||+|.+ +++ |.+||. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 479999999 9999999999999999999999999999999999999999996 433 788988 78999
Q ss_pred eeCCeEEEEEEccc
Q 016540 109 VLEGRIITVERARR 122 (387)
Q Consensus 109 ~i~Gr~I~V~~Ak~ 122 (387)
.|+|+.|.|++...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998753
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=9.3e-16 Score=122.58 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=63.4
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeE
Q 016540 37 SDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV--LEGRI 114 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~--i~Gr~ 114 (387)
.....+.++|||+|||+++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 345677899999999999999999999999999999999875 68999999999999984 45554 56999
Q ss_pred EEEEEcccCC
Q 016540 115 ITVERARRRR 124 (387)
Q Consensus 115 I~V~~Ak~~~ 124 (387)
|.|.+|.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.4e-15 Score=130.76 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=71.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGF-GFVTMATVEEADRCIKYLDRSVLEG--RIITV 117 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~-aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V 117 (387)
..-..|||+||++.+|+++|+++|++||+|..|.|+.+ .+|| |||+|.+.++|++|++.|||..|.| ..|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34467889999999999999999999999999988764 3677 9999999999999999999999998 89999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
+|++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998763
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.4e-15 Score=127.30 Aligned_cols=75 Identities=21% Similarity=0.175 Sum_probs=67.8
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGF-GFVTMATVEEADRCIKYLDRSVLEG--RIITVERA 120 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~-aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V~~A 120 (387)
..|||+||++.+++++|+++|++||+|..|.|+.. .|| |||+|.+.++|++|++.|||..|.| ..|.|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998652 376 9999999999999999999999988 69999999
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=4.5e-16 Score=135.55 Aligned_cols=81 Identities=33% Similarity=0.592 Sum_probs=77.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+ |++..|+|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999998899999999999999999999998 99999999999999998
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=128.34 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=69.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWT---RESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~t---g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
...++|||+|||+++++++|+++|.+||+|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888777 7899999999999999999999984 478887777
Q ss_pred EEccc
Q 016540 118 ERARR 122 (387)
Q Consensus 118 ~~Ak~ 122 (387)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 165
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.2e-15 Score=128.96 Aligned_cols=80 Identities=31% Similarity=0.455 Sum_probs=71.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
....+.++|||+|| ++++++|+++|.+||+|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999996 69999999999999999999986 25899999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
++++....
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=2.3e-15 Score=131.00 Aligned_cols=81 Identities=32% Similarity=0.488 Sum_probs=77.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG--RIITV 117 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G--r~I~V 117 (387)
..+.++|||+|||..+++++|+++|.+||.|..+.|+.+..++.++|||||+|.+.++|++|++.|||..|+| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999999999999988 99999
Q ss_pred EEc
Q 016540 118 ERA 120 (387)
Q Consensus 118 ~~A 120 (387)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=1.5e-15 Score=139.34 Aligned_cols=80 Identities=30% Similarity=0.548 Sum_probs=74.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
...+|||+|||+.+++++|+++|.+||.|+.|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999885 3368999999999999999999999999999999999998
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.5e-15 Score=119.37 Aligned_cols=72 Identities=25% Similarity=0.546 Sum_probs=66.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhc----C-------CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAE----G-------KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV 109 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~----G-------~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~ 109 (387)
.+.++|||+|||+.+++++|+++|.+| | +|..|.++.+ +|||||+|.+.++|++|| .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988754 799999999999999999 899999
Q ss_pred eCCeEEEEEE
Q 016540 110 LEGRIITVER 119 (387)
Q Consensus 110 i~Gr~I~V~~ 119 (387)
|+|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 169
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.3e-16 Score=121.97 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=67.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
.+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ ++|||||+|.+.++|++|+.. ...++|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35789999999999999999999999999999999765 589999999999999865431 34568999999999
Q ss_pred ccCCC
Q 016540 121 RRRRG 125 (387)
Q Consensus 121 k~~~~ 125 (387)
+++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=122.04 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=66.1
Q ss_pred CCEEEEecCCCCCCHHH----HHHHhhhc-CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 43 GNNLYVTGLSPRITKRE----LEKHFAAE-GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~d----L~~~F~k~-G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.+.|||+|||+.+++++ |+++|.+| |+|.+| |+ |+|||+|.+.++|++||+.|||..|.|++|.|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999987 56899999 599887 33 99999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 016540 118 ERARRRRGR 126 (387)
Q Consensus 118 ~~Ak~~~~r 126 (387)
.+|+...+-
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999987553
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2.1e-15 Score=138.55 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCCEEEEecCC-CCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 41 NPGNNLYVTGLS-PRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 41 ~~~~~LfVgnLp-~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
.++++|||+||| +.+++++|+++|.+||.|..|.|+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999875 379999999999999999999999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 9754
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.5e-15 Score=137.60 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=75.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
.+.++|||+|||.++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|+|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 44689999999999999999999999999999999999989999999999999999999999999999999999999887
Q ss_pred ccC
Q 016540 121 RRR 123 (387)
Q Consensus 121 k~~ 123 (387)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.5e-15 Score=129.06 Aligned_cols=80 Identities=21% Similarity=0.413 Sum_probs=74.4
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcccC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARRR 123 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~~ 123 (387)
.+|||+|||..+++++|+++|.+||+|..|.|+.++. +.++|||||+|.+.++|++|++.|+|..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999999999999999999999999999998874 668999999999999999999999999999999999999765
Q ss_pred C
Q 016540 124 R 124 (387)
Q Consensus 124 ~ 124 (387)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=3e-15 Score=129.61 Aligned_cols=81 Identities=38% Similarity=0.555 Sum_probs=75.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE--EEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI--ITV 117 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~--I~V 117 (387)
....++|||+|||..+++++|+++|.+||.|..+.|+.+..+|.++|||||+|.+.++|++|++.|||..|+|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999999999989999999999999999999999999999999964 888
Q ss_pred EEc
Q 016540 118 ERA 120 (387)
Q Consensus 118 ~~A 120 (387)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1.1e-14 Score=120.31 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCCEEEEecCCC-----CCCHHHHHHHhhhcCCeEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 41 NPGNNLYVTGLSP-----RITKRELEKHFAAEGKVIDVHLVVDPWT-RESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 41 ~~~~~LfVgnLp~-----~~te~dL~~~F~k~G~I~~v~i~~d~~t-g~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
.+..+|+|.||.. +.++++|+++|++||+|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999953 2368999999999999999999998754 678999999999999999999999999999999
Q ss_pred EEEEEcccC
Q 016540 115 ITVERARRR 123 (387)
Q Consensus 115 I~V~~Ak~~ 123 (387)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=5.5e-15 Score=129.16 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=74.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE---GRIIT 116 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~---Gr~I~ 116 (387)
....++|||+|||..+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||+.|||..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999986 5889999999999999999999999998776 49999
Q ss_pred EEEcc
Q 016540 117 VERAR 121 (387)
Q Consensus 117 V~~Ak 121 (387)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99983
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=6.6e-15 Score=128.63 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTR--ESRGFGFVTMATVEEADRCIKYLDRSVLE---GRIIT 116 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg--~srG~aFVeF~s~edA~~Al~~LnG~~i~---Gr~I~ 116 (387)
..++|||+|||+.+++++|+++|.+||+|..|.|+.++.++ .++|||||+|.+.++|++||+.|++..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998886 89999999999999999999999998876 67888
Q ss_pred EEEcccCC
Q 016540 117 VERARRRR 124 (387)
Q Consensus 117 V~~Ak~~~ 124 (387)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88887654
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=7.4e-15 Score=129.17 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=72.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 119 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~ 119 (387)
....++|||+|||..+++++|+++|.+||+|..+ ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 4467899999999999999999999999988766 45788899999999999999999999999999999999999
Q ss_pred cccC
Q 016540 120 ARRR 123 (387)
Q Consensus 120 Ak~~ 123 (387)
|+++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9864
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.2e-14 Score=137.94 Aligned_cols=83 Identities=20% Similarity=0.421 Sum_probs=75.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 39 AENPGNNLYVTGLSPRITKRELE----KHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~----~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
...+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999966 8999999999998875 6778999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 016540 115 ITVERARRRR 124 (387)
Q Consensus 115 I~V~~Ak~~~ 124 (387)
|.|++++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997543
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=5.5e-15 Score=128.61 Aligned_cols=80 Identities=31% Similarity=0.580 Sum_probs=74.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999994 678999999999886
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.5e-14 Score=135.64 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE-GRIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~-Gr~I~V 117 (387)
...+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. +|||||+|.+.++|++||+.|||..|+ |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999998653 689999999999999999999999999 999999
Q ss_pred EEcc
Q 016540 118 ERAR 121 (387)
Q Consensus 118 ~~Ak 121 (387)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=1.7e-14 Score=137.56 Aligned_cols=85 Identities=20% Similarity=0.359 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeeCCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 38 DAENPGNNLYVTGLSPR-ITKRELEKHFAAEGKVIDVHLVVDPW-TRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~-~te~dL~~~F~k~G~I~~v~i~~d~~-tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
......++|||+|||.. +++++|+++|.+||.|..|.|+.+.. ||.++|||||+|.+.++|++|| .|||..|+|+.|
T Consensus 205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 205 SATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp --CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred ccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 34567799999999999 99999999999999999999998876 6889999999999999999999 999999999999
Q ss_pred EEEEcccC
Q 016540 116 TVERARRR 123 (387)
Q Consensus 116 ~V~~Ak~~ 123 (387)
.|.||+++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999865
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.5e-14 Score=130.29 Aligned_cols=80 Identities=13% Similarity=0.275 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||+.+++++|+++|.+||+|..|.|+.+. ++.++|||||+|.+.++|++||+.+ +..|+|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999886 4889999999999999999999855 569999999999887
Q ss_pred cC
Q 016540 122 RR 123 (387)
Q Consensus 122 ~~ 123 (387)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.8e-14 Score=133.51 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=75.0
Q ss_pred CCCCCCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 39 AENPGNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
...+.++|||+|||+ .+++++|+++|.+||+|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345689999999999 99999999999999999999998875 789999999999999999999999999999999
Q ss_pred EEcccCC
Q 016540 118 ERARRRR 124 (387)
Q Consensus 118 ~~Ak~~~ 124 (387)
++++...
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9997653
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=114.85 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCCCEEEEecCCCCCC-----------HHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016540 39 AENPGNNLYVTGLSPRIT-----------KRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR 107 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~t-----------e~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG 107 (387)
...+.++|+|.||..... +++|+++|.+||+|..|.| .++. ++|||||+|.+.++|++||+.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999944332 5899999999999999966 4442 689999999999999999999999
Q ss_pred ceeCCeEEEEEEcccCC
Q 016540 108 SVLEGRIITVERARRRR 124 (387)
Q Consensus 108 ~~i~Gr~I~V~~Ak~~~ 124 (387)
..|+|+.|.|+++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999998754
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.52 E-value=6.2e-14 Score=133.08 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=79.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
..++|||+|||+.+++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||+.|+|..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.52 E-value=4.7e-14 Score=133.89 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=79.4
Q ss_pred CCCCCCEEEEecCCCCC-CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 39 AENPGNNLYVTGLSPRI-TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~-te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
.....++|||+|||..+ ++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..|+|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 016540 118 ERARRRRG 125 (387)
Q Consensus 118 ~~Ak~~~~ 125 (387)
.++.++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99987643
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.3e-14 Score=135.19 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=71.2
Q ss_pred CCCCCEEEEecCCCCC---------CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 40 ENPGNNLYVTGLSPRI---------TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~---------te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
....++|||+||+..+ ++++|.++|.+||+|..|.|+. .+|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 379999999999999999999999999
Q ss_pred ------------CCeEEEEEEcccCC
Q 016540 111 ------------EGRIITVERARRRR 124 (387)
Q Consensus 111 ------------~Gr~I~V~~Ak~~~ 124 (387)
.|+.|.|.||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=8.3e-15 Score=128.82 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=73.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
...+.++|||+|||..+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ |||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4566899999999999999999999999998765 334445567789999999999999999995 99999999999999
Q ss_pred EcccCC
Q 016540 119 RARRRR 124 (387)
Q Consensus 119 ~Ak~~~ 124 (387)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=3.1e-14 Score=127.95 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=72.3
Q ss_pred CCEEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 016540 43 GNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAR 121 (387)
Q Consensus 43 ~~~LfVgnLp~-~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak 121 (387)
.++|||+|||+ .+++++|+++|.+||.|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998774 7899999999999999999999999999999999998
Q ss_pred cCC
Q 016540 122 RRR 124 (387)
Q Consensus 122 ~~~ 124 (387)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=6.3e-14 Score=128.68 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=70.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcCCe--EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe----
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEGKV--IDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGR---- 113 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I--~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr---- 113 (387)
..+..+|||+|||+.++|++|+++|.+||.| ..|.|+.+. +..+|||||+|.+.++|++||..|||.+|+|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3567899999999999999999999999999 888887764 44579999999999999999999999999986
Q ss_pred EEEEEEc
Q 016540 114 IITVERA 120 (387)
Q Consensus 114 ~I~V~~A 120 (387)
+|.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 6777775
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.3e-13 Score=127.77 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=72.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE-GRIITV 117 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~-Gr~I~V 117 (387)
..+.++|||+|||..+++++|+++|.+|| +|..|.|+.+ .+|||||+|.+.++|++||+.|||..|+ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45679999999999999999999999999 9999998653 3789999999999999999999999999 999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
.|+++.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=7.5e-14 Score=125.42 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=72.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE-GRIITV 117 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~-Gr~I~V 117 (387)
..+.++|||+|||..+++++|+++|.+|| .|..|.|+.+ .+|||||+|.+.++|++||+.|||..|+ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 9999998654 3789999999999999999999999999 999999
Q ss_pred EEcccC
Q 016540 118 ERARRR 123 (387)
Q Consensus 118 ~~Ak~~ 123 (387)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999763
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.6e-13 Score=129.73 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 016540 38 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITV 117 (387)
Q Consensus 38 ~~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V 117 (387)
......++|||+|||+.+|+++|.++|.+||.|..|.|..+ +|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 33456789999999999999999999999999999998643 799999999999999999999999999999999
Q ss_pred EEccc
Q 016540 118 ERARR 122 (387)
Q Consensus 118 ~~Ak~ 122 (387)
.++..
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99874
No 195
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=2.4e-13 Score=114.81 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=71.2
Q ss_pred CCCEEEEecCC--CCC---CHHHHHHHhhhcCCeEEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 016540 42 PGNNLYVTGLS--PRI---TKRELEKHFAAEGKVIDVHLVVDPW----TRESRGFGFVTMATVEEADRCIKYLDRSVLEG 112 (387)
Q Consensus 42 ~~~~LfVgnLp--~~~---te~dL~~~F~k~G~I~~v~i~~d~~----tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G 112 (387)
++++|+|.|+- .++ .++||+++|++||+|..|.|+.+.. ++..+|||||+|.+.++|++|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999983 222 3689999999999999999998864 45678999999999999999999999999999
Q ss_pred eEEEEEEccc
Q 016540 113 RIITVERARR 122 (387)
Q Consensus 113 r~I~V~~Ak~ 122 (387)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2.9e-13 Score=111.73 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCCEEEEecC--CCCCC--------HHHHHHHhhhcCCeEEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016540 41 NPGNNLYVTGL--SPRIT--------KRELEKHFAAEGKVIDVHLVVDPWT--RESRGFGFVTMATVEEADRCIKYLDRS 108 (387)
Q Consensus 41 ~~~~~LfVgnL--p~~~t--------e~dL~~~F~k~G~I~~v~i~~d~~t--g~srG~aFVeF~s~edA~~Al~~LnG~ 108 (387)
.+++.|.|.|+ +..+. +++|+++|++||+|..|.|+.+..+ +.++|||||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 43443 3689999999999999999988755 357899999999999999999999999
Q ss_pred eeCCeEEEEEEcccC
Q 016540 109 VLEGRIITVERARRR 123 (387)
Q Consensus 109 ~i~Gr~I~V~~Ak~~ 123 (387)
.|+|+.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998643
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=2.6e-13 Score=128.20 Aligned_cols=84 Identities=29% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeC---CeEEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD-RSVLE---GRIITV 117 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln-G~~i~---Gr~I~V 117 (387)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|++||..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 589999999999999999999999995 55555 999999
Q ss_pred EEcccCCCC
Q 016540 118 ERARRRRGR 126 (387)
Q Consensus 118 ~~Ak~~~~r 126 (387)
.++......
T Consensus 174 ~~~~~~~~~ 182 (261)
T 3sde_A 174 EPMEQFDDE 182 (261)
T ss_dssp EECCCEESS
T ss_pred eeccccCcc
Confidence 999876443
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=6.5e-14 Score=115.41 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=63.8
Q ss_pred EecCCCCCCHHHHHHHh------------hhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 48 VTGLSPRITKRELEKHF------------AAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 48 VgnLp~~~te~dL~~~F------------~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
+.||++.+++++|+++| ++||+|..|.|+.+.. +.++|||||+|.+.++|++|++.|||..|+|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 9999999999998764 6789999999999999999999999999999999
Q ss_pred EEEEc
Q 016540 116 TVERA 120 (387)
Q Consensus 116 ~V~~A 120 (387)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.43 E-value=2.7e-13 Score=129.11 Aligned_cols=82 Identities=18% Similarity=0.377 Sum_probs=71.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 120 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~A 120 (387)
..++|||+|||+.+++++|.++|.+|| +|..|.|+.+.. +.++|||||+|.+.++|++||+.|+|..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999988765 778999999999999999999999999999999999999
Q ss_pred ccCC
Q 016540 121 RRRR 124 (387)
Q Consensus 121 k~~~ 124 (387)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 8653
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=3.7e-13 Score=117.48 Aligned_cols=76 Identities=22% Similarity=0.498 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhc----C-------CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAE----G-------KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~----G-------~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
+.++|||+|||+.+++++|+++|.+| | .|..+.+.. .+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777777643 4799999999999999999 7999999
Q ss_pred CCeEEEEEEcccCC
Q 016540 111 EGRIITVERARRRR 124 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~~ 124 (387)
+|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999887543
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=5.3e-13 Score=119.16 Aligned_cols=75 Identities=23% Similarity=0.500 Sum_probs=66.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhc----C-------CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAE----G-------KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~----G-------~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
..++|||+|||+.+++++|+++|.+| | .|..+.+. .++|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 56666553 35899999999999999999 7999999
Q ss_pred CCeEEEEEEcccC
Q 016540 111 EGRIITVERARRR 123 (387)
Q Consensus 111 ~Gr~I~V~~Ak~~ 123 (387)
+|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-12 Score=105.69 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCEEEEecCC-------CCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 016540 43 GNNLYVTGLS-------PRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRII 115 (387)
Q Consensus 43 ~~~LfVgnLp-------~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I 115 (387)
..+|.|.-.. ..+++++|+++|.+||+|..|.|+. .++|||||+|.+.++|+.||+.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5567666443 4689999999999999999999973 4689999999999999999997554 689999
Q ss_pred EEEEcccCCC
Q 016540 116 TVERARRRRG 125 (387)
Q Consensus 116 ~V~~Ak~~~~ 125 (387)
.|+|++....
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.2e-12 Score=129.47 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=66.7
Q ss_pred CCCCCCEEEEec--CCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---Ce
Q 016540 39 AENPGNNLYVTG--LSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLE---GR 113 (387)
Q Consensus 39 ~~~~~~~LfVgn--Lp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~---Gr 113 (387)
...++.+|||+| |++.+|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||.++. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 588999999999999999999887743 4799999999999999999999999883 44
Q ss_pred --EEEEEEcc
Q 016540 114 --IITVERAR 121 (387)
Q Consensus 114 --~I~V~~Ak 121 (387)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57778774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.1e-11 Score=103.88 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=67.2
Q ss_pred CCCCCEEEEecC--CCCC--------CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016540 40 ENPGNNLYVTGL--SPRI--------TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSV 109 (387)
Q Consensus 40 ~~~~~~LfVgnL--p~~~--------te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~ 109 (387)
..+++.|.|.|+ +.+. .++||+++|++||.|..|.|..+. .+|||||+|.+.++|++||+.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 456788999998 2221 135889999999999999986653 48999999999999999999999999
Q ss_pred eCCeEEEEEEccc
Q 016540 110 LEGRIITVERARR 122 (387)
Q Consensus 110 i~Gr~I~V~~Ak~ 122 (387)
|+|+.|.|+++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999964
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=5.5e-11 Score=100.77 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCCCCCCEEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CceeCC
Q 016540 37 SDAENPGNNLYVTGLSPR-ITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT-VEEADRCIKYLD--RSVLEG 112 (387)
Q Consensus 37 ~~~~~~~~~LfVgnLp~~-~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s-~edA~~Al~~Ln--G~~i~G 112 (387)
+-+..+++.|||+||+.. +++++|+++|.+||+|.+|+|+.+.. .|||+|.+ ..+|+.|+.+|| +.+|+|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 456778999999999999 99999999999999999999988753 59999999 899999999995 778999
Q ss_pred eEEEEEEcc
Q 016540 113 RIITVERAR 121 (387)
Q Consensus 113 r~I~V~~Ak 121 (387)
..+.|++..
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 999988775
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.6e-10 Score=90.80 Aligned_cols=75 Identities=27% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCCCEEEEecCCC----CCCH----HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 016540 41 NPGNNLYVTGLSP----RITK----RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG 112 (387)
Q Consensus 41 ~~~~~LfVgnLp~----~~te----~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G 112 (387)
++..||+|.-++. ++.. .+|.+.|.+||+|..++|+.+. +||+|.+.++|.+||+ |||..|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888887762 2323 5789999999999999998763 8999999999999999 99999999
Q ss_pred eEEEEEEcccCC
Q 016540 113 RIITVERARRRR 124 (387)
Q Consensus 113 r~I~V~~Ak~~~ 124 (387)
+.|+|+++++..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999998764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.4e-09 Score=85.64 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCCCCEEEEecCCCC-----C-CH---HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 40 ENPGNNLYVTGLSPR-----I-TK---RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~-----~-te---~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
.++..||+|.-++.. + .+ .+|.+.|.+||+|..++|+.+. +||+|.+.++|.+||+ |||.+|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456779999888643 2 21 5689999999999999998763 9999999999999999 999999
Q ss_pred CCeEEEEEEcc
Q 016540 111 EGRIITVERAR 121 (387)
Q Consensus 111 ~Gr~I~V~~Ak 121 (387)
+|+.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=6e-09 Score=95.69 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCHHHHHHHhhhcCCeEEEEEeeCC----CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccc
Q 016540 55 ITKRELEKHFAAEGKVIDVHLVVDP----WTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERARR 122 (387)
Q Consensus 55 ~te~dL~~~F~k~G~I~~v~i~~d~----~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~~Ak~ 122 (387)
-.+++|.+.|.+||+|..+.|+.+. .++..+|++||+|.+.++|++||+.|||..|+|+.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3467899999999999999998554 3458899999999999999999999999999999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=9.5e-07 Score=73.01 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=67.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhhc-----CCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 016540 40 ENPGNNLYVTGLSPRITKRELEKHFAAE-----GKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRI 114 (387)
Q Consensus 40 ~~~~~~LfVgnLp~~~te~dL~~~F~k~-----G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~ 114 (387)
.+...+|-|-|||..++...|..|++.+ |.|+.|.+..|. +-|+|+|.+...|-+|.-.|+|.+|+|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456788899999999999999999999 999999998773 56999999999999999899999999999
Q ss_pred EEEEEc
Q 016540 115 ITVERA 120 (387)
Q Consensus 115 I~V~~A 120 (387)
|.|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=4.1e-05 Score=62.73 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=64.1
Q ss_pred CCCEEEEecCCCCC-C----HHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 42 PGNNLYVTGLSPRI-T----KRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 42 ~~~~LfVgnLp~~~-t----e~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
-.++|+|+||+.++ . .+.++++|..|+++....++.. -.-..|.|.+.++|.+|-..|++..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998865 2 2577999999999988777654 34579999999999999999999999999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|-++++.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999844
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00037 Score=55.77 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=63.3
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRE--SRGFGFVTMATVEEADRCIKYLDRSVLEG-----RIIT 116 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~--srG~aFVeF~s~edA~~Al~~LnG~~i~G-----r~I~ 116 (387)
++|.|.+||+.+||+++.+.+..+.++.....+..+.+.+ ...-|||.|.+.+++....+.++|+.+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998887777766654432 23679999999999999999999997642 2345
Q ss_pred EEEccc
Q 016540 117 VERARR 122 (387)
Q Consensus 117 V~~Ak~ 122 (387)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777653
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0005 Score=56.13 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=60.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhh-----cCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAA-----EGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIIT 116 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k-----~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~ 116 (387)
.+.+|.|.|||..+.++.|+-+|++ -|+|..+.... +-|+|+|.+.+.|+..|+ -..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4789999999999999999999987 26888887642 579999999999999988 346788999999
Q ss_pred EEEcccC
Q 016540 117 VERARRR 123 (387)
Q Consensus 117 V~~Ak~~ 123 (387)
|.-..+.
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 8765443
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=0.0006 Score=57.15 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEE
Q 016540 39 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEG-RIITV 117 (387)
Q Consensus 39 ~~~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~G-r~I~V 117 (387)
.....+.|.|.++|+.. ...|..+|.+||+|++..... ...+-.|.|.+..+|++||. .||..|+| ..|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 34557899999999985 567788899999999877621 35799999999999999999 69999985 66667
Q ss_pred EEc
Q 016540 118 ERA 120 (387)
Q Consensus 118 ~~A 120 (387)
...
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 664
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.10 E-value=0.0012 Score=53.32 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=44.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD 106 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln 106 (387)
..++| ++|.++...||.++|..||.| .|.++.| .-|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999954 4555554 379999999999999999763
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.0014 Score=53.04 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=44.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLD 106 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~Ln 106 (387)
.++| ++|.++...||.++|..||. ..|.++.| .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4455 99999999999999999994 45666655 379999999999999999774
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.81 E-value=0.0023 Score=51.67 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRE--SRGFGFVTMATVEEADRCIKYLDRSVLEG-----RII 115 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~--srG~aFVeF~s~edA~~Al~~LnG~~i~G-----r~I 115 (387)
.-+|.|..||+.+||+++.+.+..+-++.....+..+.+.+ .-.-|||.|.+.+++....+.++|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999888877665554333333332221 23568999999999999999999987643 245
Q ss_pred EEEEcc
Q 016540 116 TVERAR 121 (387)
Q Consensus 116 ~V~~Ak 121 (387)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 677774
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.37 E-value=0.0047 Score=52.52 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=56.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEee------------CCCCC-CcccEEEEEeCCHHHHHHHHHHhCC
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVID-VHLVV------------DPWTR-ESRGFGFVTMATVEEADRCIKYLDR 107 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~-v~i~~------------d~~tg-~srG~aFVeF~s~edA~~Al~~LnG 107 (387)
..+.|.|-+.|+..++. |.+.|++||.|++ +.+.. .+... ...++..|+|.+..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 45778899998876655 5667999999976 21111 00000 125788999999999999999 799
Q ss_pred ceeCCeEEEEEEcc
Q 016540 108 SVLEGRIITVERAR 121 (387)
Q Consensus 108 ~~i~Gr~I~V~~Ak 121 (387)
..|+|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887765
No 218
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.80 E-value=0.15 Score=51.40 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=5.3
Q ss_pred CHHHHHHHHHH
Q 016540 94 TVEEADRCIKY 104 (387)
Q Consensus 94 s~edA~~Al~~ 104 (387)
+.+++...+..
T Consensus 115 te~~L~~~F~~ 125 (437)
T 3pgw_S 115 TESKLRREFEV 125 (437)
T ss_pred CHHHHHHHHHH
Confidence 44455555543
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.72 E-value=0.0053 Score=62.68 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=42.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIK 103 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~ 103 (387)
...|||. .+..+++.+|.++|++||.|..+.+-.++ ..||+|||.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999998876553 4799999999999997765
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.16 E-value=0.015 Score=49.64 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=28.4
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016540 72 DVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS 108 (387)
Q Consensus 72 ~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~ 108 (387)
.+.|+.+.. ..+|||||+|.+.++|++||+.+++.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhccc
Confidence 355666653 47899999999999999999988764
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.93 E-value=0.0079 Score=51.13 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=36.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEccc
Q 016540 82 RESRGFGFVTMATVEEADRCIKYL-DRSVLEGRIITVERARR 122 (387)
Q Consensus 82 g~srG~aFVeF~s~edA~~Al~~L-nG~~i~Gr~I~V~~Ak~ 122 (387)
...+|+++|+|.+.++|++||+.| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 346899999999999999999999 9999999 999998865
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.40 E-value=1.1 Score=46.02 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=44.3
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDR 107 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG 107 (387)
..++|+ +|..+...+|.++|+.||.| .|.++. ...|||.|.+.+.|..+++.+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 456665 99999999999999999954 454443 34799999999999999998853
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.84 E-value=1.9 Score=32.07 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=43.7
Q ss_pred EEEEe-cCCCCCCHHHHHHHhhhcC-----CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 016540 45 NLYVT-GLSPRITKRELEKHFAAEG-----KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVE 118 (387)
Q Consensus 45 ~LfVg-nLp~~~te~dL~~~F~k~G-----~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~~i~Gr~I~V~ 118 (387)
+|||. +--..+...+|..++..-+ .|-.|.|. ..|.||+... +.|+.+++.|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56663 2244567778888887554 45567773 3489998875 45778889999999999999988
Q ss_pred Ecc
Q 016540 119 RAR 121 (387)
Q Consensus 119 ~Ak 121 (387)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.37 E-value=16 Score=28.92 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=53.6
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-------eeCCe
Q 016540 41 NPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS-------VLEGR 113 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~-------~i~Gr 113 (387)
...|-|-|-|+|..+-..++.-...-.|---+|+.+ -|-|.|.|.+.++..-||.+|-.+ +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 356788899999999999888777778877777663 467999999999999999887432 34565
Q ss_pred EEEEE
Q 016540 114 IITVE 118 (387)
Q Consensus 114 ~I~V~ 118 (387)
.+.|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 55543
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=58.29 E-value=28 Score=24.65 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=43.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYL 105 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~L 105 (387)
..++.|.++.-..-...|+..+.+ ..|..+.+... .+-+.|+|.+.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 357889999888888999999999 88887777432 457888888777778888853
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.59 E-value=51 Score=28.90 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=38.0
Q ss_pred CEEEEecCCC-C--------CCHHHHHHHh--hhcCCeEEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHH
Q 016540 44 NNLYVTGLSP-R--------ITKRELEKHF--AAEGKVIDVHLVVDPWTRESRGFGFVTMAT-VEEADRCIK 103 (387)
Q Consensus 44 ~~LfVgnLp~-~--------~te~dL~~~F--~k~G~I~~v~i~~d~~tg~srG~aFVeF~s-~edA~~Al~ 103 (387)
-+++|-|++. . ...++|.+.| ..|.++. |..+.++. | ..|+|+|+|.. ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~-G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL-G-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS-B-EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC-C-CceeEEEEecCChHHHHHHHH
Confidence 3677888887 2 3347899977 8898876 44444432 2 57899999974 444555554
No 227
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=46.72 E-value=70 Score=22.17 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=42.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
.++.|.|+.-..-...|+..+.+...|..+.+... .+-+.|+|. +.++...||+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 36778888877777889999998878877777443 467889985 567788888864
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=46.60 E-value=41 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016540 69 KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS 108 (387)
Q Consensus 69 ~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~ 108 (387)
+|..+.++.. ..||.||++...++...+|..+.|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3556666433 5899999999999999999877765
No 229
>2bbd_A Coat protein; archaea, hyperthermophIle, evolution, crystal, viral; 2.04A {Sulfolobus turreted icosahedral virus}
Probab=41.24 E-value=16 Score=33.17 Aligned_cols=78 Identities=26% Similarity=0.223 Sum_probs=50.3
Q ss_pred cccccccCCCCCccccccCcccccccCCCCccc------------ccCCCCCccccccceeeeeeeeechhhhHHHhhhc
Q 016540 305 AIHVVLAPNGGLTQEARGGATLRVYPQGLGRVF------------PVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLL 372 (387)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (387)
.-+.+.|+|+-.. .|.|.+++++|=.=-=.-| -.|-.|+||++.....-.-|----..|++++.|-|
T Consensus 92 gqnpa~papgtsv-pasgsv~lnvmwefdlarfpatmvqniilsiltg~~psgv~ina~f~iti~yervtaqei~~eggl 170 (350)
T 2bbd_A 92 GQNPAYPAPGTSV-PASGSVNLNVMWEFDLARFPATMVQNIILSILTGQAPSGVSINASFYITITYERVTAQEILSEGGL 170 (350)
T ss_dssp TCSCEESCTTCEE-CTTEEEEEEEEEEEEEEEECGGGSSCEEEEEEECCCCTTCEEEEEEEEEEEEEECCHHHHHHTTCB
T ss_pred CCCCCCCCCCCcC-CcCCcccceeEEEeehhhCcHHHHHHhHHhhhcCCCCCceEEeeeEEEEEEEEeeeHHHHHhccCC
Confidence 3455667776554 6788888887632211123 35889999999876665555555568999999988
Q ss_pred cccccccce-Eee
Q 016540 373 HRNHHKMNL-TVL 384 (387)
Q Consensus 373 ~~~~~~~~~-~~~ 384 (387)
--.. .|-| |||
T Consensus 171 g~dg-emplatvl 182 (350)
T 2bbd_A 171 GADG-EMPLATVL 182 (350)
T ss_dssp CTTS-SSBTTCCE
T ss_pred CCCC-ccchhhhc
Confidence 7654 3443 444
No 230
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=40.32 E-value=7.4 Score=37.63 Aligned_cols=38 Identities=42% Similarity=0.790 Sum_probs=28.1
Q ss_pred cccccCCCCCccccccceeeeeeeeechhhhHHHhhhccccccccceEeeec
Q 016540 335 RVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLLHRNHHKMNLTVLCS 386 (387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (387)
.||-.|| |+|.--||+ +-+|+|+||.+|+- .+++|+|+
T Consensus 149 ~VFaTGG------IGGVHRgae-~t~DISADL~eLar-------TpV~VVcA 186 (335)
T 4gim_A 149 KVFATGG------IGGVHRGAE-HTFDISADLQELAN-------TNVTVVCA 186 (335)
T ss_dssp CEEECSC------CCCBBTTHH-HHCCBCHHHHHHHH-------SCCEEEEC
T ss_pred cEEeeCC------cCccCCCCC-CCccccchHHHhcc-------CCeEEEee
Confidence 4788776 555555554 45899999999984 57889986
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.79 E-value=4.8 Score=34.42 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=17.5
Q ss_pred HHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC
Q 016540 58 RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA 93 (387)
Q Consensus 58 ~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~ 93 (387)
+|+.++|...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 566677777787765433 4899999875
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=39.68 E-value=6.1 Score=31.37 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=0.0
Q ss_pred CCCCEEEEecCCCCCCHHH
Q 016540 41 NPGNNLYVTGLSPRITKRE 59 (387)
Q Consensus 41 ~~~~~LfVgnLp~~~te~d 59 (387)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4456899999999999864
No 233
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=38.22 E-value=97 Score=21.38 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=42.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHHh
Q 016540 42 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT----VEEADRCIKYL 105 (387)
Q Consensus 42 ~~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s----~edA~~Al~~L 105 (387)
...++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3456888899888788889999988877776666433 4678888863 46667777765
No 234
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=37.56 E-value=15 Score=35.00 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.3
Q ss_pred eechhhhHHHhhhccccccccceEeeec
Q 016540 359 VLDLSQDLLALGLLHRNHHKMNLTVLCS 386 (387)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (387)
-+|+|.||..|+ +.+++|+|+
T Consensus 136 t~DISaDL~eL~-------rTpV~VVca 156 (297)
T 1vkm_A 136 RVDVSQDLTEMS-------SSRAVLVSS 156 (297)
T ss_dssp SSCBCHHHHHHT-------TCCEEEEES
T ss_pred CcccchhHHHhc-------CCCeEEEec
Confidence 689999999998 578999996
No 235
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=36.02 E-value=90 Score=20.35 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=37.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC---CHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA---TVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~---s~edA~~Al~~L 105 (387)
++.|.|+.-..-...|+..+.....|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4566777666566778888888877877776433 456788886 456666777654
No 236
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=35.03 E-value=1e+02 Score=20.59 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=39.2
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
.++.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888776566778888888877877776432 457788885 356667777754
No 237
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=34.55 E-value=12 Score=36.03 Aligned_cols=38 Identities=34% Similarity=0.604 Sum_probs=26.4
Q ss_pred cccccCCCCCccccccceeeeeeeeechhhhHHHhhhccccccccceEeeec
Q 016540 335 RVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLLHRNHHKMNLTVLCS 386 (387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (387)
.||-.|| |+|.--||+ +-+|+|.||..|+ +.+++|+|+
T Consensus 129 ~VFaTGG------iGGVHRgae-~t~DISaDL~eLa-------rTpV~VVca 166 (316)
T 4ex8_A 129 QVFTTAG------IGGVHRRGE-DTLDISPDLLQFR-------KTKMTVVSG 166 (316)
T ss_dssp CEEECSC------BCCBBTTHH-HHCCBCTHHHHTT-------TCCEEEEES
T ss_pred cEEEeCC------ccccCCCCC-CCcchhhhHHHhc-------CCCeEEEec
Confidence 3777776 344444444 3589999999988 568899986
No 238
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=33.15 E-value=1.1e+02 Score=20.32 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=38.7
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC---HHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT---VEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s---~edA~~Al~~L 105 (387)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 35778888776666778898988877887776443 4578888863 45556666654
No 239
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=31.10 E-value=1.4e+02 Score=21.12 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
..+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 456788898877777889999998888887777432 467888885 456677777754
No 240
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.77 E-value=78 Score=21.50 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=40.8
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC---CHHHHHHHHHH
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA---TVEEADRCIKY 104 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~---s~edA~~Al~~ 104 (387)
.++.|.|+.-..-...|+..+.+...|..+.+... .+-+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888887777889999998888887777443 456788874 45667777775
No 241
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=28.84 E-value=1.3e+02 Score=19.93 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=38.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC---HHHHHHHHHH
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT---VEEADRCIKY 104 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s---~edA~~Al~~ 104 (387)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4778888776667888899988877877777443 4567888863 4556666664
No 242
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=27.72 E-value=1.3e+02 Score=19.63 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=39.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHH
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKY 104 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~ 104 (387)
++.|.++.-..-...|+..+.+...|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5788888877777889999988877877776433 457888886 34566666664
No 243
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=27.64 E-value=24 Score=32.29 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=12.8
Q ss_pred hccccccccceEeeec
Q 016540 371 LLHRNHHKMNLTVLCS 386 (387)
Q Consensus 371 ~~~~~~~~~~~~~~~~ 386 (387)
+-+.|+||+||..|.+
T Consensus 63 ~~~~~~~~fni~tlys 78 (227)
T 3l82_B 63 FQLNNQHKFNILILYS 78 (227)
T ss_dssp EESSSSCEEEEEECSC
T ss_pred EEECCeeEEEEEEecc
Confidence 3468999999988864
No 244
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.51 E-value=1.1e+02 Score=24.43 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=26.5
Q ss_pred CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016540 69 KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRS 108 (387)
Q Consensus 69 ~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~LnG~ 108 (387)
.|..+..+.+ .+||-|||=....+++.||+.+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3555555322 5899999999999999998876544
No 245
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=27.03 E-value=22 Score=30.19 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=24.5
Q ss_pred cccccCCCCCccccccceeeeeeeeechhhhHHHhh
Q 016540 335 RVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALG 370 (387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (387)
.|+-+|.-.-.+++.=+..+++|..+|++..+++..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a 67 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKA 67 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHH
Confidence 777777655444444444567899999998887654
No 246
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=26.82 E-value=1.4e+02 Score=19.76 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=40.1
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
.++.|.++....-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35677788777677889999988878877776433 457888885 456667777754
No 247
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=26.55 E-value=2.1e+02 Score=21.90 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=41.4
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT----VEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s----~edA~~Al~~L 105 (387)
.+|.|.++....-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888887778889999988877877777433 4678899873 45666777754
No 248
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=26.47 E-value=1.2e+02 Score=20.23 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=38.6
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 35778787665556778888888777776666432 457888886 356667777765
No 249
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=26.36 E-value=1.5e+02 Score=19.97 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=39.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
++.|.++....-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677787766566778888888877877776433 457888885 356677777754
No 250
>1pm4_A YPM; jelly roll fold, toxin; 1.75A {Yersinia pseudotuberculosis} SCOP: b.135.1.1 PDB: 1poq_A
Probab=25.39 E-value=24 Score=27.70 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=26.8
Q ss_pred cccccccCCCCcccccCCCCCccccccceeeeeeeeechhhhHHHhhhccccccccceEeeecC
Q 016540 324 ATLRVYPQGLGRVFPVGGHPSGVTLEGATLGAQVQVLDLSQDLLALGLLHRNHHKMNLTVLCSL 387 (387)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
++.++--||+|+|.-.|. -.|-+-+|... |.+.-.+ ..-.|.|.+||++
T Consensus 7 ~tytgtiqgkgevci~gn-kegk~rggely-avl~stn-------------~nadmtlill~~i 55 (119)
T 1pm4_A 7 ATYTGTIQGKGEVCIIGN-KEGKTRGGELY-AVLHSTN-------------VNADMTLILLRNV 55 (119)
T ss_dssp EEEEEEECTTCEEEEEES-TTCCCCCEEEE-EEEECSC-------------TTCCEEEEEEEEC
T ss_pred eeeeeEeecceeEEEEeC-ccccccCcEEE-EEEeecC-------------CCCceEEEEEEec
Confidence 345566799999987764 33434333322 2111111 1245888888874
No 251
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.52 E-value=1.1e+02 Score=29.65 Aligned_cols=51 Identities=14% Similarity=-0.025 Sum_probs=37.0
Q ss_pred EEEEecCCCCC----CHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 016540 45 NLYVTGLSPRI----TKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104 (387)
Q Consensus 45 ~LfVgnLp~~~----te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~ 104 (387)
--+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh
Confidence 44789986532 246677888899999888772 3456778899999988863
No 252
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=24.35 E-value=1.2e+02 Score=22.21 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=40.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
.+|.|.++....-...|+..+...-.|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778887766666778998988878887777543 457888885 356677777755
No 253
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=23.47 E-value=1.7e+02 Score=19.52 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=40.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHHh
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT----VEEADRCIKYL 105 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s----~edA~~Al~~L 105 (387)
..++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457889999887777889999988877877776433 4578888864 34455666643
No 254
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=23.26 E-value=24 Score=29.11 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=13.3
Q ss_pred CCcccccCCCCCccccccceeeeeeeeechh
Q 016540 333 LGRVFPVGGHPSGVTLEGATLGAQVQVLDLS 363 (387)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (387)
||.|||. .+| |+|||+.|+.
T Consensus 86 KGdV~~T--------~gG---G~~V~FtDiE 105 (120)
T 3vhx_B 86 KGDIYKT--------RGG---GQSVQFTDIE 105 (120)
T ss_dssp EEEEEEC--------TTS---CEEEEEEEEE
T ss_pred EeeEEee--------cCC---ceEEEecchh
Confidence 5788874 222 6788888763
No 255
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=22.89 E-value=2.1e+02 Score=22.52 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=36.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
.|.|.++.-..-...|+..+.+...|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5667777766666777777777766666555332 356777875 456677777765
No 256
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=22.62 E-value=1.7e+02 Score=19.29 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC---CHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA---TVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~---s~edA~~Al~~L 105 (387)
++.|.++.-..-...|+..+.....|..+.+.. ..+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISL------VTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBT------TTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCHHHHHHHHHHC
Confidence 567777776555677888888877777665532 2457788885 456666777754
No 257
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.38 E-value=2.2e+02 Score=21.88 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=38.3
Q ss_pred EEEecCCCCCCHHHHHHHhhh-cC-CeEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 016540 46 LYVTGLSPRITKRELEKHFAA-EG-KVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKY 104 (387)
Q Consensus 46 LfVgnLp~~~te~dL~~~F~k-~G-~I~~v~i~~d~~tg~srG~aFVeF~s~edA~~Al~~ 104 (387)
.|+..+...++..+|++.+++ |+ +|..|..+.-+ .| .--|||.+..-.+|.+....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 455567788899999988877 55 56666655443 12 23599999887777765444
No 258
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=22.12 E-value=1.7e+02 Score=22.82 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=40.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
..|.|.++.-..-...|+..+.+.-.|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 46778888776666778888888777777766432 457888886 456777777765
No 259
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=22.05 E-value=1.9e+02 Score=19.47 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=40.5
Q ss_pred CEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeCC--HHHHHHHHHHh
Q 016540 44 NNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMAT--VEEADRCIKYL 105 (387)
Q Consensus 44 ~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~s--~edA~~Al~~L 105 (387)
.++.|.++.-..-...|+..+.+...|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 36788898877777889999988877877776433 4578888875 45556667654
No 260
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=22.05 E-value=1.3e+02 Score=26.79 Aligned_cols=27 Identities=4% Similarity=0.022 Sum_probs=23.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCcee
Q 016540 84 SRGFGFVTMATVEEADRCIKYLDRSVL 110 (387)
Q Consensus 84 srG~aFVeF~s~edA~~Al~~LnG~~i 110 (387)
-+||-|||=.+..++++||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 589999999999999999998887543
No 261
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=20.83 E-value=1.4e+02 Score=20.45 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=38.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHHh
Q 016540 45 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMA----TVEEADRCIKYL 105 (387)
Q Consensus 45 ~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~~d~~tg~srG~aFVeF~----s~edA~~Al~~L 105 (387)
++.|.++.-..-...|+..+.....|..+.+.. ..+.+.|+|. +.++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVAL------MAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBT------TTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 577888877667788899888887776665532 2456888885 356667777765
No 262
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.48 E-value=94 Score=28.69 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhhcCCeEEEEEe
Q 016540 43 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLV 76 (387)
Q Consensus 43 ~~~LfVgnLp~~~te~dL~~~F~k~G~I~~v~i~ 76 (387)
..-+.|+|||+.++...|..++.. ..+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 457889999999999999999977 555554443
Done!