BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016542
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 96/161 (59%), Gaps = 9/161 (5%)

Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           + LPPGFRF+PTDEE++  YL  K     FS   I E+DL K +PW LP+KA  GEKE+Y
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
           FF  RDRKYP G R NR   +GYWKATG DK I                   LVFY G+A
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-------STEGQRVGIKKALVFYIGKA 130

Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
           PKG KTNW+MHEYRL          K   D+WV+CR++ K 
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKL--DDWVLCRIYKKQ 169


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 96/161 (59%), Gaps = 9/161 (5%)

Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           + LPPGFRF+PTDEE++  YL  K     FS   I E+DL K +PW LP+KA  GEKE+Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
           FF  RDRKYP G R NR   +GYWKATG DK I                   LVFY G+A
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-------STEGQRVGIKKALVFYIGKA 127

Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
           PKG KTNW+MHEYRL          K   D+WV+CR++ K 
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKL--DDWVLCRIYKKQ 166


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  158 bits (399), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 96/164 (58%), Gaps = 10/164 (6%)

Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           ++LPPGFRFHPTD+E++ HYL  K          I EVDL K +PWDLP +A  G +E+Y
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
           FF  RDRKYP G R NRA   GYWKATG DK +                   LVFY G+A
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV-------APRGRTLGIKKALVFYAGKA 125

Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAK---DEWVVCRVFHKN 176
           P+G KT+W+MHEYRL          K      D+WV+CR+++K 
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,598,853
Number of Sequences: 62578
Number of extensions: 464434
Number of successful extensions: 977
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 9
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)