Query 016542
Match_columns 387
No_of_seqs 227 out of 992
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.2E-58 1.1E-62 418.6 15.6 159 12-177 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.6E-57 8.9E-62 411.5 14.2 157 12-177 11-167 (171)
3 1cmb_A Met APO-repressor; DNA- 20.3 88 0.003 25.5 3.6 40 25-68 50-89 (104)
4 2c4b_A Barnase mcoeeti fusion; 15.9 96 0.0033 27.1 3.1 62 27-102 4-73 (143)
5 1ldd_A APC2WHB, anaphase promo 15.8 76 0.0026 24.7 2.2 27 18-45 36-63 (74)
6 4dox_A Coat protein; all helix 10.7 1.1E+02 0.0038 28.5 2.1 27 14-40 151-177 (226)
7 3dz1_A Dihydrodipicolinate syn 8.0 1.5E+02 0.0052 28.1 1.9 21 14-36 105-125 (313)
8 1na6_A Ecorii, restriction end 7.8 4.7E+02 0.016 26.4 5.4 43 125-172 79-123 (404)
9 1f6k_A N-acetylneuraminate lya 7.3 1.6E+02 0.0054 27.6 1.6 21 15-36 103-123 (293)
10 2ojp_A DHDPS, dihydrodipicolin 7.1 1.6E+02 0.0056 27.5 1.6 25 15-42 100-124 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.2e-58 Score=418.60 Aligned_cols=159 Identities=50% Similarity=0.982 Sum_probs=137.8
Q ss_pred ccCCCCCCCCceeCCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCce
Q 016542 12 RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTN 91 (387)
Q Consensus 12 ~~~~~~LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~n 91 (387)
.+..+.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..|+++||||+++++||++|.|++
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 35778999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred eecCCceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeCCCcccC---CCCCCCCCcEE
Q 016542 92 RATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYY---NLPKAAKDEWV 168 (387)
Q Consensus 92 Rat~~GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~~~~~~~---~lp~~~~~e~V 168 (387)
|+|++||||+||++++|... |.+||+||+|+||+|++|+|.||+|+||||+|.+..... .......++||
T Consensus 89 R~t~~G~WkatG~dk~I~~~-------g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wV 161 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPR-------GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWV 161 (174)
T ss_dssp EEETTEEEEECSCCEEECCS-------SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEE
T ss_pred eecCCceEccCCCCcEEeeC-------CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEE
Confidence 99999999999999999862 689999999999999999999999999999998754321 01123468999
Q ss_pred EEEEEEecc
Q 016542 169 VCRVFHKNI 177 (387)
Q Consensus 169 LCRIf~K~~ 177 (387)
|||||+|+.
T Consensus 162 lCrvf~K~~ 170 (174)
T 3ulx_A 162 LCRLYNKKN 170 (174)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEcCC
Confidence 999999986
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.6e-57 Score=411.48 Aligned_cols=157 Identities=54% Similarity=0.975 Sum_probs=133.9
Q ss_pred ccCCCCCCCCceeCCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCce
Q 016542 12 RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTN 91 (387)
Q Consensus 12 ~~~~~~LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~n 91 (387)
...++.|||||||||||||||.|||++|+.+.+++..+|+++|||++|||+||+.++.++++||||+++++||++|.|++
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence 35678999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred eecCCceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeCCCcccCCCCCCCCCcEEEEE
Q 016542 92 RATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCR 171 (387)
Q Consensus 92 Rat~~GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCR 171 (387)
|+|++||||+||++++|..+ +.+||+||+|+||+|++|++.||+|+||||+|..... .......++|||||
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~-------~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCr 161 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTE-------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCR 161 (171)
T ss_dssp EEETTEEEEEEEEEEEEEET-------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEE
T ss_pred ccCCCCEEeccCCCceEEec-------CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEE
Confidence 99999999999999999973 5899999999999999999999999999999987531 11123568999999
Q ss_pred EEEecc
Q 016542 172 VFHKNI 177 (387)
Q Consensus 172 If~K~~ 177 (387)
||+|+.
T Consensus 162 v~~k~~ 167 (171)
T 1ut7_A 162 IYKKQS 167 (171)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 999987
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.28 E-value=88 Score=25.52 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCccccc
Q 016542 25 HPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAK 68 (387)
Q Consensus 25 ~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k 68 (387)
|-|.-||++.-...-..|+|+|. +.||-+..|.++|..++
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAAK 89 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHHH
Confidence 67888888876667788999985 68999999999998753
No 4
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=15.93 E-value=96 Score=27.11 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCccceee--ccCCCCCCCC------CcccccCCCceEEEeeccCccCCCCCCceeecCCce
Q 016542 27 TDEEIITHYLTEKVMNTSFSACAIGE--VDLNKSEPWD------LPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGY 98 (387)
Q Consensus 27 TDEELI~~YL~~Ki~g~pl~~~~I~e--vDVy~~ePWd------LP~~~k~gekeWYFFs~r~rKy~~G~R~nRat~~Gy 98 (387)
|+.+-|..||.. ...+|...|.. ++--..+|-+ +|++...|+. |.-+.+.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 455666688876 35677777764 5556777754 4555443332 5444443332 23678
Q ss_pred EEec
Q 016542 99 WKAT 102 (387)
Q Consensus 99 WKat 102 (387)
|+--
T Consensus 70 y~E~ 73 (143)
T 2c4b_A 70 WREA 73 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8543
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=15.81 E-value=76 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=22.0
Q ss_pred CCCCceeCC-CHHHHHHHHHHHHHcCCCC
Q 016542 18 LPPGFRFHP-TDEEIITHYLTEKVMNTSF 45 (387)
Q Consensus 18 LPPGFRF~P-TDEELI~~YL~~Ki~g~pl 45 (387)
.|.|+.|.. |++||-. ||.+|+....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367999998 9999886 79999987644
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=10.69 E-value=1.1e+02 Score=28.53 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=18.7
Q ss_pred CCCCCCCCceeCCCHHHHHHHHHHHHH
Q 016542 14 GVIDLPPGFRFHPTDEEIITHYLTEKV 40 (387)
Q Consensus 14 ~~~~LPPGFRF~PTDEELI~~YL~~Ki 40 (387)
..++-+-|..+.||++|+|.+=..+++
T Consensus 151 AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 151 AAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344555599999999999998555444
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.97 E-value=1.5e+02 Score=28.07 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=15.5
Q ss_pred CCCCCCCCceeCCCHHHHHHHHH
Q 016542 14 GVIDLPPGFRFHPTDEEIITHYL 36 (387)
Q Consensus 14 ~~~~LPPGFRF~PTDEELI~~YL 36 (387)
..+-+||- |.||+++|+.||-
T Consensus 105 avlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 105 GVMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEEECCCT--TCCSHHHHHHHHH
T ss_pred EEEECCCC--CCCCHHHHHHHHH
Confidence 34457774 5599999999873
No 8
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=7.85 E-value=4.7e+02 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=27.8
Q ss_pred EEEEEeeecCCCCCCCcCeEEEEEEeC--CCcccCCCCCCCCCcEEEEEE
Q 016542 125 KKTLVFYKGRAPKGEKTNWVMHEYRLE--GKFSYYNLPKAAKDEWVVCRV 172 (387)
Q Consensus 125 KKtLvFY~GrapkG~KT~WvMhEYrL~--~~~~~~~lp~~~~~e~VLCRI 172 (387)
.-.++||..|..++.+. ||||. ....+.-......+-.||++.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 66899999887667666 99998 543222123334566777765
No 9
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=7.30 E-value=1.6e+02 Score=27.59 Aligned_cols=21 Identities=19% Similarity=0.228 Sum_probs=15.9
Q ss_pred CCCCCCCceeCCCHHHHHHHHH
Q 016542 15 VIDLPPGFRFHPTDEEIITHYL 36 (387)
Q Consensus 15 ~~~LPPGFRF~PTDEELI~~YL 36 (387)
.+-+||-| |.|++++|+.||-
T Consensus 103 vlv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 103 LSAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 34456754 8899999999883
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=7.12 E-value=1.6e+02 Score=27.47 Aligned_cols=25 Identities=16% Similarity=0.547 Sum_probs=17.7
Q ss_pred CCCCCCCceeCCCHHHHHHHHHHHHHcC
Q 016542 15 VIDLPPGFRFHPTDEEIITHYLTEKVMN 42 (387)
Q Consensus 15 ~~~LPPGFRF~PTDEELI~~YL~~Ki~g 42 (387)
.+-+||-| |.|++++|+.|| +.|..
T Consensus 100 vlv~~P~y-~~~s~~~l~~~f--~~ia~ 124 (292)
T 2ojp_A 100 CLTVTPYY-NRPSQEGLYQHF--KAIAE 124 (292)
T ss_dssp EEEECCCS-SCCCHHHHHHHH--HHHHT
T ss_pred EEECCCCC-CCCCHHHHHHHH--HHHHH
Confidence 34467754 789999999988 34543
Done!