Query 016542
Match_columns 387
No_of_seqs 227 out of 992
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 15:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016542.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016542hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 100.0 1.2E-53 8.8E-58 382.1 14.2 156 12-176 11-166 (166)
2 d1cmca_ a.43.1.5 (A:) Met repr 21.9 37 0.0027 25.8 3.6 39 25-67 50-88 (104)
3 d1o5ka_ c.1.10.1 (A:) Dihydrod 11.6 37 0.0027 29.0 1.4 24 16-42 101-124 (295)
4 d1f74a_ c.1.10.1 (A:) N-acetyl 9.2 73 0.0053 27.1 2.5 21 15-36 103-123 (293)
5 d1ldda_ a.4.5.34 (A:) Anaphase 8.5 86 0.0063 22.6 2.2 27 18-45 36-63 (74)
6 d1i27a_ a.4.5.30 (A:) C-termin 8.4 65 0.0047 23.3 1.4 14 26-39 9-22 (73)
7 d2a6na1 c.1.10.1 (A:1-292) Dih 7.5 71 0.0052 27.2 1.6 19 16-35 101-119 (292)
8 d1xkya1 c.1.10.1 (A:1-292) Dih 6.8 76 0.0056 26.8 1.4 20 16-36 103-122 (292)
9 d1c75a_ a.3.1.1 (A:) Cytochrom 5.8 65 0.0047 22.0 0.3 21 17-38 49-69 (71)
10 d1hl2a_ c.1.10.1 (A:) N-acetyl 5.8 1E+02 0.0075 26.1 1.7 19 18-37 104-122 (295)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=1.2e-53 Score=382.07 Aligned_cols=156 Identities=54% Similarity=0.984 Sum_probs=132.3
Q ss_pred ccCCCCCCCCceeCCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCce
Q 016542 12 RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTN 91 (387)
Q Consensus 12 ~~~~~~LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~n 91 (387)
...+++|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+....++++||||+++.+++++|.|.+
T Consensus 11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~ 90 (166)
T d1ut7a_ 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN 90 (166)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccc
Confidence 35788999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred eecCCceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeCCCcccCCCCCCCCCcEEEEE
Q 016542 92 RATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCR 171 (387)
Q Consensus 92 Rat~~GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCR 171 (387)
|+|++|+||++|+++.|... |.+||+||+|+||+++++++.+|+|+||||+|.+..... .....++|||||
T Consensus 91 R~~g~G~Wk~~g~~~~i~~~-------g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~--~~~~~~~~VLCr 161 (166)
T d1ut7a_ 91 RVAGSGYWKATGTDKIISTE-------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN--GSTKLDDWVLCR 161 (166)
T ss_dssp EEETTEEEEEEEEEEEEEET-------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEE
T ss_pred cccCCCEecccCCCceEecC-------CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc--CccccCCEEEEE
Confidence 99999999999999988762 689999999999999999999999999999998753211 223467999999
Q ss_pred EEEec
Q 016542 172 VFHKN 176 (387)
Q Consensus 172 If~K~ 176 (387)
||+|+
T Consensus 162 I~~Kk 166 (166)
T d1ut7a_ 162 IYKKQ 166 (166)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 2
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=21.88 E-value=37 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccc
Q 016542 25 HPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKA 67 (387)
Q Consensus 25 ~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~ 67 (387)
|-|.-||++.-...-..|+|+|. +.|+-+..|.++|..+
T Consensus 50 HATNSELLCEAFLHAfTGQPLP~----D~Dl~Kd~~~~iP~~~ 88 (104)
T d1cmca_ 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCcccccHHH
Confidence 67888888876667788999985 6899999999999865
No 3
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=11.55 E-value=37 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=17.0
Q ss_pred CCCCCCceeCCCHHHHHHHHHHHHHcC
Q 016542 16 IDLPPGFRFHPTDEEIITHYLTEKVMN 42 (387)
Q Consensus 16 ~~LPPGFRF~PTDEELI~~YL~~Ki~g 42 (387)
+-+|| |.|.||++||+.||- .|..
T Consensus 101 ~v~pP-~y~~~s~~~i~~~~~--~ia~ 124 (295)
T d1o5ka_ 101 LVVTP-YYNKPTQEGLYQHYK--YISE 124 (295)
T ss_dssp EEECC-CSSCCCHHHHHHHHH--HHHT
T ss_pred EEeCC-CCCCCCHHHHHHHHH--HHHh
Confidence 34566 567899999999873 3544
No 4
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=9.17 E-value=73 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.228 Sum_probs=16.2
Q ss_pred CCCCCCCceeCCCHHHHHHHHH
Q 016542 15 VIDLPPGFRFHPTDEEIITHYL 36 (387)
Q Consensus 15 ~~~LPPGFRF~PTDEELI~~YL 36 (387)
.+-+||-| |.||++|++.||.
T Consensus 103 i~~~pP~~-~~~s~~~~~~~~~ 123 (293)
T d1f74a_ 103 LSAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EECCCCCS-SCCCHHHHHHHHH
T ss_pred eeccCccc-cccchHHHHHHHh
Confidence 34566655 7899999999885
No 5
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.51 E-value=86 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCCCcee-CCCHHHHHHHHHHHHHcCCCC
Q 016542 18 LPPGFRF-HPTDEEIITHYLTEKVMNTSF 45 (387)
Q Consensus 18 LPPGFRF-~PTDEELI~~YL~~Ki~g~pl 45 (387)
.|.|+.| .+|.+||-. ||..|+....+
T Consensus 36 v~~~~~~~~~t~~eL~~-FL~~~V~e~kL 63 (74)
T d1ldda_ 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred cCCCCCCCCcCHHHHHH-HHHHHHhcCce
Confidence 4678888 578889885 79999987654
No 6
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.43 E-value=65 Score=23.33 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHH
Q 016542 26 PTDEEIITHYLTEK 39 (387)
Q Consensus 26 PTDEELI~~YL~~K 39 (387)
+--||-|..||.+|
T Consensus 9 ~itEeaVrRYL~RK 22 (73)
T d1i27a_ 9 QVTEDAVRRYLTRK 22 (73)
T ss_dssp SCCHHHHHHHHHHS
T ss_pred CcCHHHHHHHHhhC
Confidence 44589999999987
No 7
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=7.52 E-value=71 Score=27.16 Aligned_cols=19 Identities=21% Similarity=0.648 Sum_probs=14.2
Q ss_pred CCCCCCceeCCCHHHHHHHH
Q 016542 16 IDLPPGFRFHPTDEEIITHY 35 (387)
Q Consensus 16 ~~LPPGFRF~PTDEELI~~Y 35 (387)
+-+||-| |.|+|+||+.||
T Consensus 101 ~~~pP~~-~~~~~~~i~~~f 119 (292)
T d2a6na1 101 LTVTPYY-NRPSQEGLYQHF 119 (292)
T ss_dssp EEECCCS-SCCCHHHHHHHH
T ss_pred eccCCCC-CCCCHHHHHHHH
Confidence 3456644 779999999876
No 8
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=6.77 E-value=76 Score=26.84 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=15.3
Q ss_pred CCCCCCceeCCCHHHHHHHHH
Q 016542 16 IDLPPGFRFHPTDEEIITHYL 36 (387)
Q Consensus 16 ~~LPPGFRF~PTDEELI~~YL 36 (387)
+-+|| +.|.|++++|+.||-
T Consensus 103 lv~pP-~~~~~s~~~i~~~~~ 122 (292)
T d1xkya1 103 MLVAP-YYNKPSQEGMYQHFK 122 (292)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 44566 667899999999774
No 9
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}
Probab=5.85 E-value=65 Score=21.96 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=13.7
Q ss_pred CCCCCceeCCCHHHHHHHHHHH
Q 016542 17 DLPPGFRFHPTDEEIITHYLTE 38 (387)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL~~ 38 (387)
.+|+ |++.+.|-+.|..||+.
T Consensus 49 ~MP~-~~Ls~~ei~~i~~Yl~~ 69 (71)
T d1c75a_ 49 GMPG-GIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp TBCS-CSSCHHHHHHHHHHHHT
T ss_pred CCCC-CCCCHHHHHHHHHHHHH
Confidence 3554 56666666677788864
No 10
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=1e+02 Score=26.05 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=0.0
Q ss_pred CCCCceeCCCHHHHHHHHHH
Q 016542 18 LPPGFRFHPTDEEIITHYLT 37 (387)
Q Consensus 18 LPPGFRF~PTDEELI~~YL~ 37 (387)
+|| +-|.++++|++.||..
T Consensus 104 ~~p-~~~~~~~~~~~~~~~~ 122 (295)
T d1hl2a_ 104 VTP-FYYPFSFEEHCDHYRA 122 (295)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred eec-cccCCChHHHHHHHHH
Done!