BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016543
         (387 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B8DL62|GLPK_DESVM Glycerol kinase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM
           19637) GN=glpK PE=3 SV=1
          Length = 497

 Score = 36.2 bits (82), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 22/157 (14%)

Query: 8   KQRWCTQTLTPLMEGPDPEMLEEGSKKESSWEVIREW--FGIQKGISSGTNHNNFSMSLE 65
           K RW  + +        P    +  K E  +  I  W  + + KG    T+ +N S +L 
Sbjct: 139 KVRWILENV--------PGARAKAEKGELLFGTIDTWLIWNLTKGKVHATDESNASRTLL 190

Query: 66  GSSIPAKRQDLRLLLGVLGCPLAPIPLV---NDPILRIHI----KDIPIETSSAHYIIQQ 118
            +    +  D   LLG+LG P + +P V   ++ +  IH     K IPI  ++       
Sbjct: 191 FNINTGQWDDE--LLGILGVPRSMLPTVTRSSEVVGEIHPEFLGKAIPIAGNAGDQQAAT 248

Query: 119 YLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKN 155
           Y     CLK    AKN Y TG   ++    E+ + KN
Sbjct: 249 Y--GNACLKP-GMAKNTYGTGCFMLMNTGKEVHASKN 282


>sp|A1VA10|GLPK_DESVV Glycerol kinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain
           DP4) GN=glpK PE=3 SV=1
          Length = 497

 Score = 33.5 bits (75), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 25  PEMLEEGSKKESSWEVIREW--FGIQKGISSGTNHNNFSMSLEGSSIPAKRQDLRLLLGV 82
           P    +  K E  +  I  W  + + KG +  T+ +N S +L  +       D   LLG+
Sbjct: 148 PGARAKAEKGELLFGTIDTWLIWNLTKGKAHVTDSSNASRTLMFNINTGAWDDE--LLGI 205

Query: 83  LGCPLAPIPLV---NDPILRIHI----KDIPIETSSAHYIIQQYLAATGCLKQQKRAKNM 135
           L  P + +P V   ++ +  IH     K IPI  ++       Y     CLK    AKN 
Sbjct: 206 LDVPRSMLPRVTGSSEVVGDIHPEFLGKAIPIAGNAGDQQAATY--GNACLKP-GMAKNT 262

Query: 136 YATGTVKMVCCETEISSGKN 155
           Y TG   ++   TE+ S +N
Sbjct: 263 YGTGCFMLMNTGTEVRSSQN 282


>sp|Q726H4|GLPK_DESVH Glycerol kinase OS=Desulfovibrio vulgaris (strain Hildenborough /
           ATCC 29579 / NCIMB 8303) GN=glpK PE=3 SV=1
          Length = 497

 Score = 33.5 bits (75), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 25  PEMLEEGSKKESSWEVIREW--FGIQKGISSGTNHNNFSMSLEGSSIPAKRQDLRLLLGV 82
           P    +  K E  +  I  W  + + KG +  T+ +N S +L  +       D   LLG+
Sbjct: 148 PGARAKAEKGELLFGTIDTWLIWNLTKGKAHVTDSSNASRTLMFNINTGAWDDE--LLGI 205

Query: 83  LGCPLAPIPLV---NDPILRIHI----KDIPIETSSAHYIIQQYLAATGCLKQQKRAKNM 135
           L  P + +P V   ++ +  IH     K IPI  ++       Y     CLK    AKN 
Sbjct: 206 LDVPRSMLPRVTGSSEVVGDIHPEFLGKAIPIAGNAGDQQAATY--GNACLKP-GMAKNT 262

Query: 136 YATGTVKMVCCETEISSGKN 155
           Y TG   ++   TE+ S +N
Sbjct: 263 YGTGCFMLMNTGTEVRSSQN 282


>sp|P0CL61|MAZE9_MYCTU Antitoxin MazE9 OS=Mycobacterium tuberculosis GN=mazE9 PE=1 SV=1
          Length = 76

 Score = 32.0 bits (71), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 245 IGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQ--TP 302
           + DD+  +L     RA +  RS G    IR + Y            LED +    Q  + 
Sbjct: 7   LSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPT----------LEDDYANAWQEWSA 56

Query: 303 ENDTIYWETTIGSSIGD 319
             DT  WE T+G  +GD
Sbjct: 57  AGDTDAWEQTVGDGVGD 73


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,546,534
Number of Sequences: 539616
Number of extensions: 6287564
Number of successful extensions: 12325
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12324
Number of HSP's gapped (non-prelim): 6
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)