Query 016543
Match_columns 387
No_of_seqs 91 out of 93
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 3E-140 7E-145 980.8 21.7 243 135-377 1-245 (245)
2 PRK09455 rseB anti-sigma E fac 51.4 16 0.00035 36.6 3.5 46 236-293 128-173 (319)
3 PF14371 DUF4412: Domain of un 48.4 25 0.00054 27.6 3.5 17 240-256 4-20 (89)
4 PF09865 DUF2092: Predicted pe 43.3 1.1E+02 0.0025 29.2 7.7 91 170-260 44-151 (214)
5 KOG0968 DNA polymerase zeta, c 37.9 1.5 3.4E-05 50.9 -6.4 101 249-366 728-842 (1488)
6 COG5017 Uncharacterized conser 31.9 14 0.00029 34.5 -0.4 49 287-342 33-85 (161)
7 PRK02939 lipoprotein; Reviewed 26.1 1.8E+02 0.0039 28.9 6.1 66 138-203 43-128 (236)
8 KOG0189 Phosphoadenosine phosp 22.1 41 0.00088 33.4 0.9 35 164-228 117-151 (261)
9 COG4081 Uncharacterized protei 21.5 36 0.00079 31.4 0.4 24 79-119 5-28 (148)
10 KOG2833 Mevalonate pyrophospha 20.6 86 0.0019 32.9 2.9 65 163-227 160-248 (395)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=3.2e-140 Score=980.81 Aligned_cols=243 Identities=65% Similarity=1.110 Sum_probs=236.9
Q ss_pred hhhccceeeEEEeeeccCCccccccCCcccccceEEEeeeCCCCeEEEEEeeCceEEeccCCceeeecCCCCcCcccCCC
Q 016543 135 MYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGP 214 (387)
Q Consensus 135 mya~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~~Pd~W~~ELvv~G~Kv~AGsdGkvaWRhTpw~g~HAakGp 214 (387)
|||||||||+++||+.+++...+..+++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||||||
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp 80 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP 80 (245)
T ss_pred CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence 89999999999999998765554344678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhcCCccceecceeceeeeceeeeCCcceeEEEeecchhhhhhccCCCceEEEeeeecccccccceeEEeecc
Q 016543 215 QRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDS 294 (387)
Q Consensus 215 ~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS 294 (387)
||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++|||||||||||||||||
T Consensus 81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS 160 (245)
T PF04788_consen 81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS 160 (245)
T ss_pred CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeec--CCCCeeEEeeccccccccccccCceeeecCCcceEEEEeecCcccccccceeeeeeeeeeeeccCCCCCCc
Q 016543 295 HLTRVQT--PENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMD 372 (387)
Q Consensus 295 ~Ltri~~--~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV~GLs~D 372 (387)
||||||+ +++++|||||||||+|+|||+||||||||+|||+||||||||++++|+||||||+|+||||||||||||||
T Consensus 161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D 240 (245)
T PF04788_consen 161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD 240 (245)
T ss_pred eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence 9999999 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016543 373 YFIPP 377 (387)
Q Consensus 373 cFiPP 377 (387)
|||||
T Consensus 241 cFiPP 245 (245)
T PF04788_consen 241 CFIPP 245 (245)
T ss_pred cccCC
Confidence 99999
No 2
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=51.40 E-value=16 Score=36.56 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=33.3
Q ss_pred ceeeeceeeeCCcceeEEEeecchhhhhhccCCCceEEEeeeecccccccceeEEeec
Q 016543 236 KAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLED 293 (387)
Q Consensus 236 ~A~ciGEk~i~gedCFvLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lED 293 (387)
+-...|+.+|+|-+|++|.+.+.-. . |...-=|-++.||||+|.+-
T Consensus 128 ~~~~~g~~rVaGr~~~vi~~~PkD~-------~-----rY~~~lwiD~et~llLk~~~ 173 (319)
T PRK09455 128 DFISVGRTRIADRLCQVIRIVPKDG-------T-----RYSYIVWIDEESKLPLRVDL 173 (319)
T ss_pred eEEEccccEECCeeEEEEEEEECCC-------C-----CcceEEEEEcCCCCEEeEEE
Confidence 5577899999999999999988543 1 11111135788999988764
No 3
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=48.44 E-value=25 Score=27.63 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.6
Q ss_pred eceeeeCCcceeEEEee
Q 016543 240 LGEKRIGDDECFVLKVA 256 (387)
Q Consensus 240 iGEk~i~gedCFvLkl~ 256 (387)
.|.|+|+|-+|-..++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 58899999999999987
No 4
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=43.30 E-value=1.1e+02 Score=29.18 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=67.9
Q ss_pred EEeeeCCCCeEEEEEeeCceEEeccCCceeeecCCCCcCcccCCCCChh----hhhhh--cCC-----------ccceec
Q 016543 170 VLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPL----RRIIQ--GLD-----------PKITAS 232 (387)
Q Consensus 170 VlWQ~~Pd~W~~ELvv~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RPL----RR~lQ--GLD-----------Pr~ta~ 232 (387)
-+|-..||+..++..=++.....=.|||...=..|-+..=|..--|-.| .++.+ |++ +.....
T Consensus 44 ~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P~aDll~~d~~~~l~~ 123 (214)
T PF09865_consen 44 TVTVQRPDKLRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELPLADLLYSDPYDALMD 123 (214)
T ss_pred EEEEeCCCeEEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCccHHHhcccCchHHHhh
Confidence 4788899999999977779999999999999999998887766544444 22222 222 122234
Q ss_pred ceeceeeeceeeeCCcceeEEEeecchh
Q 016543 233 LFAKAQCLGEKRIGDDECFVLKVAADRA 260 (387)
Q Consensus 233 lF~~A~ciGEk~i~gedCFvLkl~a~~~ 260 (387)
=+.+|.+||...|||..|.-|-...+..
T Consensus 124 ~v~~~~~vG~~~V~G~~c~HlAfr~~~~ 151 (214)
T PF09865_consen 124 GVTSAKYVGQSVVGGVECDHLAFRNDDV 151 (214)
T ss_pred cceEEEEeeeEEECCEEeEEEEEecCCc
Confidence 4567899999999999999887765443
No 5
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=37.92 E-value=1.5 Score=50.90 Aligned_cols=101 Identities=25% Similarity=0.418 Sum_probs=60.9
Q ss_pred ceeEEEeecchhhhhh------ccCC----CceEEEeeeecccccccceeE-EeecceeeeeecCCCCeeEEeecccccc
Q 016543 249 ECFVLKVAADRAAVME------RSEG----PAEVIRHVLYGYFCQKSGLLI-YLEDSHLTRVQTPENDTIYWETTIGSSI 317 (387)
Q Consensus 249 dCFvLkl~a~~~~l~a------rS~~----~~EiirH~~~GYFSQrtGLLv-~lEDS~Ltri~~~~~~~vyWETt~eS~i 317 (387)
+|-|+-++.+-+-+++ |=|+ ..||++|. ||||-+|.-+|= .|- -.|.|++... ++.++-=
T Consensus 728 ~~~V~~~~sE~elf~ev~~~i~q~DPDIl~GyEi~~~S-WGyl~eR~~~l~~di~-~~lsRv~~~~-------~~n~~d~ 798 (1488)
T KOG0968|consen 728 GCRVVVMESELELFEEVAKLIVQYDPDILLGYEIHNLS-WGYLIERAKLLGIDIS-RDLSRVKCYE-------KTNESDD 798 (1488)
T ss_pred CceEEEehhHHHHHHHHHHHHHhcCcceeeeeeecccc-hHHHHHHHHHhcchHH-HHHhcCCChh-------hhhhhhh
Confidence 6778777766554433 3333 47999998 999999966552 221 1255665431 1222111
Q ss_pred cc---ccccCceeeecCCcceEEEEeecCcccccccceeeeeeeeeeeeccC
Q 016543 318 GD---YSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNV 366 (387)
Q Consensus 318 ~D---YR~VdGv~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV 366 (387)
+. |-..-|||| .||-++.+.|-=-+.++-+ ..|||.|.|||
T Consensus 799 ~~ewg~tt~S~i~i--~GR~~lNiWRilR~eV~L~------nYtlEsv~~nV 842 (1488)
T KOG0968|consen 799 EREWGYTTISGINI--VGRHVLNIWRILRSEVALT------NYTLESVVFNV 842 (1488)
T ss_pred hhhccceeeccccc--cchhhhhHHHHHhhhhhhh------hccHHHHHHHH
Confidence 11 444557777 5888888888633323332 26899999997
No 6
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=31.86 E-value=14 Score=34.54 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=30.5
Q ss_pred eeEEeecceeeeeecCCCCeeE---EeeccccccccccccCceeeecCCc-ceEEEEeec
Q 016543 287 LLIYLEDSHLTRVQTPENDTIY---WETTIGSSIGDYSDVDGVLIAHQGR-SIATVFRFG 342 (387)
Q Consensus 287 LLv~lEDS~Ltri~~~~~~~vy---WETt~eS~i~DYR~VdGv~IAH~G~-t~vtl~RfG 342 (387)
|+||+-.+ .+++-++-.+| -++.|.|.|.||| |.|+|+|. |+.+++|-+
T Consensus 33 lIvQyGn~---d~kpvagl~v~~F~~~~kiQsli~dar----IVISHaG~GSIL~~~rl~ 85 (161)
T COG5017 33 LIVQYGNG---DIKPVAGLRVYGFDKEEKIQSLIHDAR----IVISHAGEGSILLLLRLD 85 (161)
T ss_pred eeeeecCC---CcccccccEEEeechHHHHHHHhhcce----EEEeccCcchHHHHhhcC
Confidence 45555553 23332333444 4788999999999 89999985 333444433
No 7
>PRK02939 lipoprotein; Reviewed
Probab=26.15 E-value=1.8e+02 Score=28.89 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=41.6
Q ss_pred ccceeeEEEeeeccCCccccccCCcccccceEEEeee---CCCCe----------------EEEEEeeC-ceEEeccCCc
Q 016543 138 TGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQM---LPGMW----------------SLELVVGG-NKVIAGSDGK 197 (387)
Q Consensus 138 ~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~---~Pd~W----------------~~ELvv~G-~Kv~AGsdGk 197 (387)
.|.||....-.-...|+..+.....-++.|||.--.+ .=+.+ -.+++++| |-+..=-||+
T Consensus 43 rG~VK~~tqt~~ne~g~v~~~v~~~~~~eGCfdtl~~~~~~~n~~l~lvr~~n~lid~~t~~k~~~l~~kCql~~~~dg~ 122 (236)
T PRK02939 43 RGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDTLELLDLENNTGLALVLDANYYRDAETLEKRVRLQGKCQLAELPSAG 122 (236)
T ss_pred cCcceeeEEEEEcCCCcEEEEEEEEEcCCCceeeeEecccccccceEEEEecCeeeccccCeeEEEECCceEEEEccCCc
Confidence 5777776665443334333222233467888875432 22222 47888988 8899988999
Q ss_pred eeeecC
Q 016543 198 TVWRHT 203 (387)
Q Consensus 198 vaWRhT 203 (387)
+.|++.
T Consensus 123 l~~~~n 128 (236)
T PRK02939 123 VSWETD 128 (236)
T ss_pred EEEEEC
Confidence 999964
No 8
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=22.08 E-value=41 Score=33.37 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=27.0
Q ss_pred cccceEEEeeeCCCCeEEEEEeeCceEEeccCCceeeecCCCCcCcccCCCCChhhhhhhcCCcc
Q 016543 164 GESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPK 228 (387)
Q Consensus 164 ~e~G~FVlWQ~~Pd~W~~ELvv~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RPLRR~lQGLDPr 228 (387)
..+|||-+|-..-+..|-= --+||+|||+.||+-+
T Consensus 117 ~~K~~~~~~E~~~q~~~~l------------------------------~KV~P~~RA~k~L~v~ 151 (261)
T KOG0189|consen 117 ASKGGFSLWEDDHQEYDRL------------------------------RKVEPARRAYKGLNVK 151 (261)
T ss_pred HhccchhheecCchhhhhh------------------------------hhccHHHHHhhcccee
Confidence 5789999998776655421 1379999999999976
No 9
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.55 E-value=36 Score=31.42 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=18.6
Q ss_pred HHhhhCCCcccccCCCCCCccCCcCCCccccchhHHHHHHH
Q 016543 79 LLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQY 119 (387)
Q Consensus 79 LLgVvGaPL~P~pV~~~~~~~~~iKd~pIe~SsA~YIvqQY 119 (387)
+|-+||||=+|.+ .|+|=|.-.||
T Consensus 5 vlv~lGCPeiP~q-----------------issaiYls~kl 28 (148)
T COG4081 5 VLVSLGCPEIPPQ-----------------ISSAIYLSHKL 28 (148)
T ss_pred EEEEecCCCCCcc-----------------chHHHHHHHHh
Confidence 4568999999887 46777877777
No 10
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=20.59 E-value=86 Score=32.88 Aligned_cols=65 Identities=32% Similarity=0.400 Sum_probs=44.7
Q ss_pred ccccceEEEeeeC-------------------CCCeEEEEEeeC-ceEEeccCCceeeecCCCCcCcccCC--CCCh--h
Q 016543 163 SGESGCFVLWQML-------------------PGMWSLELVVGG-NKVIAGSDGKTVWRHTPWLGTHAAKG--PQRP--L 218 (387)
Q Consensus 163 ~~e~G~FVlWQ~~-------------------Pd~W~~ELvv~G-~Kv~AGsdGkvaWRhTpw~g~HAakG--p~RP--L 218 (387)
.+.-||||.|+|. ||+-++=|||++ +|-..-.-|--.=..|+-+--|-.+- |.|= +
T Consensus 160 RSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~m 239 (395)
T KOG2833|consen 160 RSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQM 239 (395)
T ss_pred hhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Confidence 4688999999773 778899999966 67666666766666677666665554 4443 3
Q ss_pred hhhhhcCCc
Q 016543 219 RRIIQGLDP 227 (387)
Q Consensus 219 RR~lQGLDP 227 (387)
|+++.-=|-
T Consensus 240 ~eaI~~rDF 248 (395)
T KOG2833|consen 240 REAIRERDF 248 (395)
T ss_pred HHHHHhcCH
Confidence 666655443
Done!