Query 016543
Match_columns 387
No_of_seqs 91 out of 93
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3buu_A Uncharacterized LOLA su 97.6 0.0042 1.4E-07 54.3 16.9 207 110-378 7-224 (229)
2 3bk5_A Putative outer membrane 97.1 0.0061 2.1E-07 53.8 11.9 175 167-377 41-233 (237)
3 3m4w_A Sigma-E factor regulato 66.8 5 0.00017 38.1 4.3 55 226-293 95-149 (295)
4 3tu8_A Burkholderia lethal fac 53.0 6.2 0.00021 35.6 2.2 25 176-201 81-105 (210)
5 2yzy_A Putative uncharacterize 45.9 16 0.00055 32.1 3.7 68 186-260 64-140 (200)
6 3mh9_C Lipoprotein LPRG; mutan 38.9 80 0.0027 28.7 7.2 77 180-266 75-155 (218)
7 1svq_A Severin; actin-binding; 17.2 50 0.0017 26.7 1.5 15 242-256 33-47 (114)
8 2g9g_A Pngase, peptide N-glyca 17.0 1.1E+02 0.0037 28.5 3.9 38 166-203 144-197 (221)
9 1bte_A Protein (activin recept 16.9 81 0.0028 25.8 2.7 22 165-188 33-54 (97)
10 1kjn_A MTH0777; hypotethical p 14.4 81 0.0028 28.3 2.2 38 80-134 10-53 (157)
No 1
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=97.59 E-value=0.0042 Score=54.31 Aligned_cols=207 Identities=11% Similarity=0.092 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHhhCchhhhhhhhhhhhccceeeEEEeeeccCCccccccCCcccccceEEEeeeCCCCeEEEEE----e
Q 016543 110 SSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELV----V 185 (387)
Q Consensus 110 SsA~YIvqQY~AAtGg~k~~~~v~smya~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~~Pd~W~~ELv----v 185 (387)
-+|+=|+++..++.++. ++..+. ++|.... ++| ....--+.+|.+.++.-++.+. +
T Consensus 7 ~~a~eil~~~~~~~~~~------~~~~~~--~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~P~~~ 66 (229)
T 3buu_A 7 VTAQSILEKADEIRFPQ------DSFQVN--VAIRTAA---PDH---------AEDLYRYQVLSKGNENSIVMITEPASE 66 (229)
T ss_dssp CCHHHHHHHHHHHHSCS------SCEEEE--EEEEEEE---TTE---------ECCCEEEEEEEETTTEEEEEEEESTTT
T ss_pred CCHHHHHHHHHhhccCC------CCeEEE--EEEEEEc---CCC---------ceEEEEEEEEecCCceEEEEEeCChhh
Confidence 36788999998887753 223332 3343221 111 0122346778888887666554 4
Q ss_pred eCceEEeccCCceeeecCCCCcCcccCCCCCh--h----hhhhhcCCccceecceeceeeeceeeeCCcceeEEEeecch
Q 016543 186 GGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRP--L----RRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADR 259 (387)
Q Consensus 186 ~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RP--L----RR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~ 259 (387)
.|..+. .+|+-+|--.|-+..- -+=++.+ + -.-+.++++ +. .-+...+|++.++|.+|++|++.+..
T Consensus 67 ~g~~~l--~~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~~-~y~~~l~g~~~v~g~~~~vl~~~pk~ 139 (229)
T 3buu_A 67 RGQAIL--MKGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---TG-DYHPQLLRNESIDDEDYYVLELTGID 139 (229)
T ss_dssp TTCEEE--EETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---BT-TEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred cCeEEe--ecCCceEEECCCCCce-EEccCcccccccccccccccCCc---cc-cCceEEeeeeeeCCeeEEEEEEEecC
Confidence 566666 3899999999977542 1111111 1 112222221 11 22447899999999999999998866
Q ss_pred hhhhhccCCCceEEEeeeecccccccceeEEeecceeeeeecCCCCeeEEeeccccccccccccCceeeecCCcceEEEE
Q 016543 260 AAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVF 339 (387)
Q Consensus 260 ~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~ 339 (387)
.. +. .=+.. =|++++|+|+++.|- . ..+.--|++.. ..+|..+||+.+++. .
T Consensus 140 ~~---~~-----y~k~~--lwiD~~t~~p~k~~~---~-----d~~G~l~k~~~---~~~~~~~~g~~~~~~-------~ 191 (229)
T 3buu_A 140 RS---VT-----YQKVL--LWVNQSNFRPYKAEF---Y-----SVSGRLLKTSR---YENFDNILGEMRPTR-------I 191 (229)
T ss_dssp TT---SS-----CSEEE--EEEETTTCCEEEEEE---E-----CTTSCEEEEEE---EEEEEEETTEEEEEE-------E
T ss_pred CC---Cc-----eEEEE--EEEECCCCcEEEEEE---E-----cCCCCEEEEEE---eeccEEECCEEEeEE-------E
Confidence 52 11 00111 267888999888754 1 11223455433 566777787666543 1
Q ss_pred eecC-cccccccceeeeeeeeeeeeccCCCCCCcccCCCc
Q 016543 340 RFGE-LSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPA 378 (387)
Q Consensus 340 RfGe-~~~~h~~TrMEE~WtIeeV~FNV~GLs~DcFiPP~ 378 (387)
.+-+ ...+| .|.|+ +.++.|| +|+-+.|-|..
T Consensus 192 ~~~d~~~~g~-~t~~~----~~~~~~~--~l~~~~Ft~~~ 224 (229)
T 3buu_A 192 IMEDALKSGE-VSVLD----YSDMKLR--DLPDKIFTKDY 224 (229)
T ss_dssp EEEESSSSCC-EEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred EEEeCcCCCC-EEEEE----EeeeEeC--CCChHhCCHHH
Confidence 2111 11223 45554 6689998 89888886643
No 2
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.07 E-value=0.0061 Score=53.84 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=100.7
Q ss_pred ceEEEeeeCC----CCeEEEEE----eeCceEEe---ccCCceeeecCCCCcCcccCCCCChhhhhhhcCCcc------c
Q 016543 167 GCFVLWQMLP----GMWSLELV----VGGNKVIA---GSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPK------I 229 (387)
Q Consensus 167 G~FVlWQ~~P----d~W~~ELv----v~G~Kv~A---GsdGkvaWRhTpw~g~HAakGp~RPLRR~lQGLDPr------~ 229 (387)
.-|.+|.+.| ++-.+++. +.|..+.. -.||+-+|--.|-+.. .-|=|.....-.+-|.|-- .
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~G~~~L~~~~~~~~~~~w~y~P~~~r-v~ri~~~~~~~~~~~s~~~~~d~~~~ 119 (237)
T 3bk5_A 41 RLMRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGADDQWLYLPALKR-VKRISSRNKSGPFMGSEFAYEDLSSF 119 (237)
T ss_dssp EEEEEEEECCTTSCCEEEEEEEESTTTTTCEEEEECCSSSCCEEEEEETTTTE-EEECCGGGTTSBSTTSSCBGGGGSCC
T ss_pred EEEEeecccCCCCCcEEEEEEECchHhCCcEEEEEEcCCCCccceeEccccCc-eEEcCccccCCCccccccChhHhhcc
Confidence 4678888877 45555555 46777663 1289999999987643 2222211111112222210 0
Q ss_pred eecceeceeeeceeeeCCcceeEEEeecchhhhhhccCCCceEEEeeeecccccccceeEEeecceeeeeecCCCCeeEE
Q 016543 230 TASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYW 309 (387)
Q Consensus 230 ta~lF~~A~ciGEk~i~gedCFvLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS~Ltri~~~~~~~vyW 309 (387)
...-| +...+|+++++|.+|++|++.+.... | ..-+.. =|+++.|+++++.|- . . ..+ --|
T Consensus 120 ~~~~y-~~~l~g~~~~~g~~~~vl~~~pk~~~---~-----~y~k~~--~wiD~~t~~~~k~~~---~--d-~~G--~l~ 180 (237)
T 3bk5_A 120 EIEKY-RFNHLKDEKFNGQDVFVLEQIPTDKN---S-----GYTKQV--VWLDKAHYRPLKVEF---Y--D-RKG--ALL 180 (237)
T ss_dssp CGGGE-EEEEEEEEEETTEEEEEEEEEESCTT---S-----SEEEEE--EEEETTTCCEEEEEE---E--E-TTS--CEE
T ss_pred ccccc-ceEEeeeeEECCeeEEEEEEEECCCC---C-----CceEEE--EEEECCCCeEEEEEE---E--c-CCC--CEE
Confidence 11222 45889999999999999999876542 1 122222 267899999988863 1 1 112 234
Q ss_pred eeccccccccccccCc-eeeecCCcceEEEEeecCcccccccceeeeeeeeeeeeccCCCCCCcccCCC
Q 016543 310 ETTIGSSIGDYSDVDG-VLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPP 377 (387)
Q Consensus 310 ETt~eS~i~DYR~VdG-v~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV~GLs~DcFiPP 377 (387)
++-. +.+|+.+|| +.+++. ..+-+...+| .|.|+ +.++.||. +|+-+.|=|.
T Consensus 181 ~~~~---~~~~~~~~g~~~~~~~-------~~~~dl~~g~-~t~~~----~~~~~~~~-~~~~~~Ft~~ 233 (237)
T 3bk5_A 181 KTLT---FANYKQYLDKYWRAHT-------MAMTNHQTGK-STELN----TSDLRFQT-GLEENDFNKN 233 (237)
T ss_dssp EEEE---EEEEEEETTTEEEEEE-------EEEEETTTCC-EEEEE----EEEEEECC-CCCGGGGCGG
T ss_pred EEEE---EeeeEEEcceEEEEEE-------EEEEECCCCC-EEEEE----EeeEEeCC-CCChHhCCHH
Confidence 4432 447777888 666543 2222212233 35555 55999994 8888888553
No 3
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=66.80 E-value=5 Score=38.08 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=40.1
Q ss_pred CccceecceeceeeeceeeeCCcceeEEEeecchhhhhhccCCCceEEEeeeecccccccceeEEeec
Q 016543 226 DPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLED 293 (387)
Q Consensus 226 DPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lED 293 (387)
|+...+..| +...+|+.+|+|-+|.+|++.+... .| -.|.| |-++.|||++|.|-
T Consensus 95 ~~~~l~~~Y-~~~~~g~erVaGr~~~vv~l~PkD~---~r-------y~y~l--WiD~et~lpLk~e~ 149 (295)
T 3m4w_A 95 DFKRLSPYY-DFISVGRTRIADRLCEVIRVVARDG---TR-------YSYIV--WMDTESKLPMRVDL 149 (295)
T ss_dssp CHHHHTTTE-EEEEEEEEEETTEEEEEEEEEETTS---CS-------CEEEE--EEETTTCCEEEEEE
T ss_pred ChhHHhhCc-eEEEcCceEECCeEEEEEEEEECCC---Cc-------eeEEE--EEEccCCCEEEEEE
Confidence 444444444 4568999999999999999987543 11 24444 67899999999875
No 4
>3tu8_A Burkholderia lethal factor 1 (BLF1); toxin, unknown function; 1.04A {Burkholderia pseudomallei} PDB: 3tua_A
Probab=53.00 E-value=6.2 Score=35.64 Aligned_cols=25 Identities=40% Similarity=0.694 Sum_probs=21.3
Q ss_pred CCCeEEEEEeeCceEEeccCCceeee
Q 016543 176 PGMWSLELVVGGNKVIAGSDGKTVWR 201 (387)
Q Consensus 176 Pd~W~~ELvv~G~Kv~AGsdGkvaWR 201 (387)
-||-.+-..++||||.|| ||.++|.
T Consensus 81 vdmlfftyylsgckvfag-dggpvwh 105 (210)
T 3tu8_A 81 VDMLFFTYYLSGCKVFAG-DGGPVWH 105 (210)
T ss_dssp TTCEEEECCBSSCEEEEE-TTSCEEE
T ss_pred hhhhhhhhhhccceEEec-CCCceee
Confidence 478889999999999998 6777884
No 5
>2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.60A {Thermus thermophilus}
Probab=45.85 E-value=16 Score=32.10 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=34.3
Q ss_pred eCceEEeccCCceeeecCCCCcCcccCCCCChhhhhhh-cCCccceeccee--------ceeeeceeeeCCcceeEEEee
Q 016543 186 GGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQ-GLDPKITASLFA--------KAQCLGEKRIGDDECFVLKVA 256 (387)
Q Consensus 186 ~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RPLRR~lQ-GLDPr~ta~lF~--------~A~ciGEk~i~gedCFvLkl~ 256 (387)
.|..++ +||+-.|...|-.. .+ -.+|+-++++ ++. ..-+.|+. +...+||+.++|.+|++|.+.
T Consensus 64 ~g~~~l--~~g~~~W~y~p~~~-qv---~i~~~~~~~~~~mg-~~~~~l~~~~~l~~~y~~~~~~~e~~~g~~~~~le~~ 136 (200)
T 2yzy_A 64 EGNFTV--ITEKEVWNYLYLTN-QL---VISPREKAKIQGLG-FAPQGLGDLKALSEQVDLRLEGEVRLPEGMAWKLVGR 136 (200)
T ss_dssp TTCEEE--ECSSCEEEEETTTT-EE---EEEC-------------------------CCEEEEEEEEEETTEEEEEEEEE
T ss_pred cCeEEE--ecCchheeecCCcC-eE---EEeCcccccCcccC-cCHHHhhccccccccceEEEEEEEEeCCccEEEEEEE
Confidence 355555 48999998887652 12 2334433322 111 01112221 125789999999999999988
Q ss_pred cchh
Q 016543 257 ADRA 260 (387)
Q Consensus 257 a~~~ 260 (387)
+...
T Consensus 137 Pk~~ 140 (200)
T 2yzy_A 137 SKEN 140 (200)
T ss_dssp C---
T ss_pred ECCC
Confidence 8543
No 6
>3mh9_C Lipoprotein LPRG; mutant LPRG, glycolipid binding protein, lipid protein, structural genomics, TB structural genomics consor TBSGC; 1.79A {Mycobacterium tuberculosis} SCOP: b.125.1.0 PDB: 3mha_A* 3mh8_A*
Probab=38.89 E-value=80 Score=28.72 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=50.9
Q ss_pred EEEEEeeCceEEeccCCceeeecCCCCcCcccCCCCChhhhhhhcCCccc-eecc---eeceeeeceeeeCCcceeEEEe
Q 016543 180 SLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKI-TASL---FAKAQCLGEKRIGDDECFVLKV 255 (387)
Q Consensus 180 ~~ELvv~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RPLRR~lQGLDPr~-ta~l---F~~A~ciGEk~i~gedCFvLkl 255 (387)
-+|+|+-|.++-+.-.++ +|+-.-.+.--..| .+-|||.. .++| +.+.+.+|++.|||.....++-
T Consensus 75 ~ve~v~vd~~lY~~~~~~------~w~~~~~a~~~~d~----~~~ldP~~gl~~lL~~~~dv~~~G~EtvdGv~t~~~tG 144 (218)
T 3mh9_C 75 DADFVVFDGILYATLTPN------QWSDFGPAADIYDP----AQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISG 144 (218)
T ss_dssp EEEEEEETTEEEEEEETT------EEEEEEEGGGTCCG----GGGTCTTTSHHHHHHTEEEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEECCEEEEecCCC------CceEcCccccccCh----hhhcCHHHHHHHHHHhcCCceecceeEECCEEEEEEEE
Confidence 588888776766665443 34332111100112 33488864 3555 6788999999999999999998
Q ss_pred ecchhhhhhcc
Q 016543 256 AADRAAVMERS 266 (387)
Q Consensus 256 ~a~~~~l~arS 266 (387)
.-+++.+.+-.
T Consensus 145 tv~~~~~~~~~ 155 (218)
T 3mh9_C 145 KVSAQAVNQIA 155 (218)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHhhhc
Confidence 88888887644
No 7
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=17.22 E-value=50 Score=26.66 Aligned_cols=15 Identities=20% Similarity=0.705 Sum_probs=11.7
Q ss_pred eeeeCCcceeEEEee
Q 016543 242 EKRIGDDECFVLKVA 256 (387)
Q Consensus 242 Ek~i~gedCFvLkl~ 256 (387)
-...|..|||||..-
T Consensus 33 ~ssLns~D~FILd~g 47 (114)
T 1svq_A 33 TSSLNSGDCFLLDAG 47 (114)
T ss_dssp SSSCCTTSEEEEEET
T ss_pred HHHcCCCCeEEEecC
Confidence 345788999999864
No 8
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=17.00 E-value=1.1e+02 Score=28.52 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=28.1
Q ss_pred cceEEEeeeCCCCeEEEEEeeCce-----------E-----EeccCCceeeecC
Q 016543 166 SGCFVLWQMLPGMWSLELVVGGNK-----------V-----IAGSDGKTVWRHT 203 (387)
Q Consensus 166 ~G~FVlWQ~~Pd~W~~ELvv~G~K-----------v-----~AGsdGkvaWRhT 203 (387)
.+|-|.|....+-=|+|+..+|.- + -.|-+|.+||-|+
T Consensus 144 ~~G~v~~~i~~~~~c~~ip~~~~l~t~e~~~~~~~~~I~a~Lsgg~g~~aWQha 197 (221)
T 2g9g_A 144 ESGSVRWKLRSETAQVNLLGDKNLRSYNDFSGATEVTLEAELSRGDGDVAWQHT 197 (221)
T ss_dssp TTCEEEEEEECSSCEEEECCEEEEEEECTTTTCSEEEEEEEEECCCGGGGGGSE
T ss_pred cCCEEEEEEeCCCceEEecCCCceEeeccCCCCcEEEEEEEEeCCCCcccchhh
Confidence 377899999998889986554422 1 3578888999875
No 9
>1bte_A Protein (activin receptor type II); serine kinase, ligand binding domain, three-finger transferase; HET: NAG; 1.50A {Mus musculus} SCOP: g.7.1.3 PDB: 2goo_C* 1lx5_B*
Probab=16.90 E-value=81 Score=25.85 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=17.1
Q ss_pred ccceEEEeeeCCCCeEEEEEeeCc
Q 016543 165 ESGCFVLWQMLPGMWSLELVVGGN 188 (387)
Q Consensus 165 e~G~FVlWQ~~Pd~W~~ELvv~G~ 188 (387)
-.+||+||.+..+ -++++.-|+
T Consensus 33 ~~~C~~lW~~~~g--~~~i~~qGC 54 (97)
T 1bte_A 33 RRHCFATWKNISG--SIEIVKQGC 54 (97)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEE
T ss_pred CCceEEEEeeCCC--CEEEEEecc
Confidence 5699999999986 466666664
No 10
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=14.44 E-value=81 Score=28.30 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=26.8
Q ss_pred HhhhCCCcccccCCCCCCccCCcCCCccccchhHHHHHHHHHh------hCchhhhhhhhh
Q 016543 80 LGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAA------TGCLKQQKRAKN 134 (387)
Q Consensus 80 LgVvGaPL~P~pV~~~~~~~~~iKd~pIe~SsA~YIvqQY~AA------tGg~k~~~~v~s 134 (387)
|=+||||=+|++ +|+|=|+..++... +|-.+|++-++.
T Consensus 10 LilLGCPE~Pvq-----------------~p~~lYl~~~Lk~~G~~v~VA~npAAlkLlev 53 (157)
T 1kjn_A 10 LMVLGCPESPVQ-----------------IPLAIYTSHKLKKKGFRVTVTANPAALRLVQV 53 (157)
T ss_dssp EEECCCSCSTTH-----------------HHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred eEEecCCCCcch-----------------hhHHHHHHHHHHhcCCeeEEecCHHHHhheec
Confidence 457999999887 57788888887654 455556555543
Done!