Query 016545
Match_columns 387
No_of_seqs 207 out of 1915
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0456 Aspartate kinase [Amin 100.0 1.4E-71 3.1E-76 545.1 24.1 363 2-373 1-366 (559)
2 PLN02551 aspartokinase 100.0 5.9E-69 1.3E-73 560.3 31.6 326 41-371 12-337 (521)
3 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 1E-61 2.2E-66 473.0 30.4 273 82-373 1-280 (288)
4 COG0527 LysC Aspartokinases [A 100.0 4.6E-62 9.9E-67 499.8 28.1 274 80-373 1-280 (447)
5 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 2.8E-61 6E-66 470.7 30.9 280 82-373 1-284 (292)
6 cd04244 AAK_AK-LysC-like AAK_A 100.0 9.5E-61 2.1E-65 468.7 30.5 282 83-373 2-290 (298)
7 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 1.6E-60 3.4E-65 466.2 30.9 278 82-373 1-286 (294)
8 cd04243 AAK_AK-HSDH-like AAK_A 100.0 3.4E-60 7.4E-65 463.6 30.1 277 82-373 1-285 (293)
9 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 7.7E-60 1.7E-64 461.4 30.3 276 82-373 1-287 (295)
10 PRK09034 aspartate kinase; Rev 100.0 5.4E-59 1.2E-63 479.8 31.3 273 82-373 1-280 (454)
11 PRK09084 aspartate kinase III; 100.0 5.5E-59 1.2E-63 479.0 30.7 276 82-373 1-280 (448)
12 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 3.8E-58 8.1E-63 451.0 29.5 279 82-373 2-296 (306)
13 PRK06291 aspartate kinase; Pro 100.0 5E-57 1.1E-61 466.5 31.2 285 81-373 1-294 (465)
14 PRK09466 metL bifunctional asp 100.0 2.6E-56 5.6E-61 485.4 29.1 277 78-373 8-291 (810)
15 PRK05925 aspartate kinase; Pro 100.0 8.6E-56 1.9E-60 453.7 29.4 271 80-373 1-271 (440)
16 PRK08373 aspartate kinase; Val 100.0 4.4E-54 9.6E-59 427.6 28.0 267 80-373 3-271 (341)
17 PRK09181 aspartate kinase; Val 100.0 4.5E-54 9.8E-59 444.5 27.9 273 79-373 1-302 (475)
18 PRK09436 thrA bifunctional asp 100.0 4.4E-53 9.6E-58 462.0 29.7 277 82-373 1-288 (819)
19 PRK08961 bifunctional aspartat 100.0 4.9E-52 1.1E-56 456.7 29.3 284 78-373 5-296 (861)
20 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 3.3E-51 7.1E-56 398.9 28.2 270 83-373 2-296 (304)
21 TIGR02078 AspKin_pair Pyrococc 100.0 1.3E-51 2.9E-56 407.8 25.7 260 82-373 1-262 (327)
22 TIGR00657 asp_kinases aspartat 100.0 6.7E-51 1.4E-55 418.1 29.3 271 81-373 1-274 (441)
23 PRK08841 aspartate kinase; Val 100.0 2.9E-48 6.3E-53 393.3 25.1 231 80-372 1-233 (392)
24 TIGR00656 asp_kin_monofn aspar 100.0 2.1E-44 4.6E-49 365.3 25.7 232 81-373 1-235 (401)
25 PRK06635 aspartate kinase; Rev 100.0 1.3E-42 2.9E-47 352.6 25.1 230 80-371 1-232 (404)
26 cd04234 AAK_AK AAK_AK: Amino A 100.0 1.4E-42 3E-47 327.8 22.9 217 82-373 1-219 (227)
27 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 4.4E-42 9.6E-47 326.4 24.9 230 82-373 1-232 (239)
28 cd04246 AAK_AK-DapG-like AAK_A 100.0 4.8E-42 1E-46 326.0 25.1 230 82-373 1-232 (239)
29 PRK07431 aspartate kinase; Pro 100.0 3.7E-42 8E-47 364.9 24.9 231 80-371 1-234 (587)
30 PRK08210 aspartate kinase I; R 100.0 6.8E-42 1.5E-46 347.7 25.4 231 80-372 1-238 (403)
31 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 2.7E-41 5.9E-46 322.3 24.6 229 83-373 2-237 (244)
32 cd02115 AAK Amino Acid Kinases 100.0 7.8E-35 1.7E-39 275.5 24.8 242 84-385 1-247 (248)
33 PF00696 AA_kinase: Amino acid 100.0 1.9E-32 4.1E-37 258.3 10.4 233 81-369 1-242 (242)
34 PRK12314 gamma-glutamyl kinase 100.0 1.2E-29 2.5E-34 245.4 19.0 236 79-386 8-262 (266)
35 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 7.9E-30 1.7E-34 244.2 17.3 229 83-386 2-250 (251)
36 PRK00358 pyrH uridylate kinase 100.0 1.1E-28 2.5E-33 233.0 18.7 219 81-387 1-231 (231)
37 PRK14557 pyrH uridylate kinase 100.0 2.3E-28 5E-33 234.1 20.0 220 80-386 4-236 (247)
38 cd04239 AAK_UMPK-like AAK_UMPK 100.0 3.8E-28 8.2E-33 229.5 19.4 216 83-386 2-228 (229)
39 PRK14558 pyrH uridylate kinase 100.0 1.5E-27 3.3E-32 225.8 20.0 164 191-386 62-228 (231)
40 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 1.3E-27 2.8E-32 226.4 18.0 218 81-386 1-230 (231)
41 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 7.7E-27 1.7E-31 219.6 17.8 212 83-386 2-220 (221)
42 TIGR02075 pyrH_bact uridylate 99.9 6.5E-27 1.4E-31 221.9 16.7 218 81-386 2-232 (233)
43 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 2.9E-26 6.3E-31 219.5 18.3 239 83-386 1-252 (252)
44 TIGR02076 pyrH_arch uridylate 99.9 2.8E-26 6E-31 215.6 17.4 211 83-386 1-220 (221)
45 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 1.8E-26 4E-31 224.2 16.3 241 81-385 15-278 (279)
46 TIGR00761 argB acetylglutamate 99.9 5.6E-26 1.2E-30 214.7 15.5 213 82-361 1-221 (231)
47 PRK00942 acetylglutamate kinas 99.9 6.2E-26 1.3E-30 220.8 15.9 241 80-386 23-280 (283)
48 PRK13402 gamma-glutamyl kinase 99.9 3.1E-25 6.7E-30 223.4 17.2 231 79-386 4-255 (368)
49 PRK05429 gamma-glutamyl kinase 99.9 4E-25 8.6E-30 223.2 16.6 235 79-386 7-259 (372)
50 cd04238 AAK_NAGK-like AAK_NAGK 99.9 4.9E-25 1.1E-29 211.4 15.4 237 83-385 1-255 (256)
51 PRK14058 acetylglutamate/acety 99.9 2E-24 4.3E-29 209.0 17.5 175 189-386 66-265 (268)
52 PLN02418 delta-1-pyrroline-5-c 99.9 3.3E-24 7.2E-29 232.2 16.7 243 79-386 14-281 (718)
53 cd04241 AAK_FomA-like AAK_FomA 99.9 5E-23 1.1E-27 196.9 20.4 166 203-386 80-252 (252)
54 COG0528 PyrH Uridylate kinase 99.9 3.1E-23 6.7E-28 194.7 17.7 219 80-386 5-236 (238)
55 TIGR01027 proB glutamate 5-kin 99.9 1.1E-23 2.5E-28 211.9 15.4 174 193-386 67-251 (363)
56 PRK14556 pyrH uridylate kinase 99.9 3.2E-23 7E-28 198.1 17.6 219 80-386 15-246 (249)
57 PLN02512 acetylglutamate kinas 99.9 6.6E-22 1.4E-26 195.2 20.4 243 81-386 48-307 (309)
58 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 8E-22 1.7E-26 190.5 20.4 217 81-386 31-261 (262)
59 CHL00202 argB acetylglutamate 99.9 2.4E-21 5.1E-26 189.2 19.1 241 81-386 24-282 (284)
60 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.9 5.4E-21 1.2E-25 184.1 18.1 230 83-386 1-257 (257)
61 COG0548 ArgB Acetylglutamate k 99.9 8.8E-21 1.9E-25 182.3 15.4 242 80-386 2-263 (265)
62 cd04256 AAK_P5CS_ProBA AAK_P5C 99.8 3.2E-18 7E-23 167.2 16.3 177 197-386 97-283 (284)
63 TIGR01092 P5CS delta l-pyrroli 99.8 2.3E-18 5E-23 187.0 16.1 239 80-386 7-273 (715)
64 PTZ00489 glutamate 5-kinase; P 99.8 3.7E-17 8.1E-22 158.2 18.4 162 209-386 87-257 (264)
65 cd04252 AAK_NAGK-fArgBP AAK_NA 99.7 4.3E-16 9.3E-21 149.4 18.9 230 84-385 2-247 (248)
66 TIGR01890 N-Ac-Glu-synth amino 99.7 5.5E-16 1.2E-20 159.3 18.7 237 81-386 18-277 (429)
67 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.7 2.7E-15 5.8E-20 146.4 19.8 238 80-385 18-279 (280)
68 COG0263 ProB Glutamate 5-kinas 99.7 3.9E-15 8.5E-20 147.1 19.1 159 209-385 89-256 (369)
69 cd04236 AAK_NAGS-Urea AAK_NAGS 99.7 4.4E-15 9.6E-20 144.2 18.9 227 77-385 32-270 (271)
70 PRK12353 putative amino acid k 99.6 1.2E-15 2.7E-20 151.0 13.6 127 256-386 180-312 (314)
71 PRK05279 N-acetylglutamate syn 99.6 9.1E-15 2E-19 150.7 18.5 239 81-386 26-289 (441)
72 PRK12352 putative carbamate ki 99.6 4.4E-15 9.6E-20 147.0 15.1 123 254-386 179-313 (316)
73 cd04240 AAK_UC AAK_UC: Unchara 99.6 4.9E-14 1.1E-18 131.5 16.4 145 191-385 51-202 (203)
74 PLN02825 amino-acid N-acetyltr 99.6 9.2E-14 2E-18 145.5 16.9 198 80-340 17-236 (515)
75 cd04235 AAK_CK AAK_CK: Carbama 99.5 8.9E-14 1.9E-18 137.2 15.5 126 256-387 176-308 (308)
76 COG1608 Predicted archaeal kin 99.5 3.5E-13 7.5E-18 127.3 18.4 166 203-386 81-250 (252)
77 TIGR00746 arcC carbamate kinas 99.5 1.7E-13 3.7E-18 135.5 16.3 127 256-386 177-308 (310)
78 PRK12686 carbamate kinase; Rev 99.5 1.1E-12 2.5E-17 129.5 18.0 125 256-386 178-310 (312)
79 PRK12454 carbamate kinase-like 99.4 1.4E-11 3.1E-16 121.7 18.7 125 256-386 180-311 (313)
80 PRK04531 acetylglutamate kinas 99.4 4.2E-12 9.1E-17 129.6 14.6 178 79-361 35-215 (398)
81 PRK12354 carbamate kinase; Rev 99.4 9.1E-12 2E-16 122.7 14.6 121 256-386 170-298 (307)
82 PRK09411 carbamate kinase; Rev 99.3 1.8E-10 4E-15 112.9 16.9 119 257-386 172-295 (297)
83 KOG1154 Gamma-glutamyl kinase 99.0 5.7E-09 1.2E-13 98.5 14.4 158 210-386 105-273 (285)
84 COG2054 Uncharacterized archae 98.3 3.4E-05 7.4E-10 70.8 15.3 83 287-382 118-203 (212)
85 COG0549 ArcC Carbamate kinase 98.0 4.2E-05 9.2E-10 74.6 10.3 124 254-386 177-310 (312)
86 KOG2436 Acetylglutamate kinase 96.6 0.02 4.3E-07 60.0 11.6 124 199-340 170-304 (520)
87 PRK03670 competence damage-ind 76.8 10 0.00023 36.8 7.7 70 204-301 20-89 (252)
88 PF00994 MoCF_biosynth: Probab 74.7 11 0.00024 32.7 6.8 69 203-300 16-84 (144)
89 COG1058 CinA Predicted nucleot 72.1 17 0.00036 35.6 7.8 69 205-302 22-90 (255)
90 cd00885 cinA Competence-damage 71.1 22 0.00048 32.3 8.0 69 204-301 19-87 (170)
91 TIGR00177 molyb_syn molybdenum 70.1 25 0.00054 30.8 7.9 66 204-298 27-92 (144)
92 PRK01215 competence damage-ind 61.0 32 0.00069 33.6 7.4 69 204-301 23-91 (264)
93 PRK03673 hypothetical protein; 60.1 37 0.0008 35.2 8.0 68 205-301 22-89 (396)
94 TIGR02667 moaB_proteo molybden 59.3 36 0.00079 30.6 7.0 69 203-299 21-90 (163)
95 cd00886 MogA_MoaB MogA_MoaB fa 57.7 45 0.00097 29.4 7.2 66 205-299 21-88 (152)
96 cd00758 MoCF_BD MoCF_BD: molyb 57.4 51 0.0011 28.3 7.4 66 204-298 19-84 (133)
97 smart00852 MoCF_biosynth Proba 57.2 45 0.00098 28.5 7.0 69 203-300 17-85 (135)
98 PRK00549 competence damage-ind 55.7 50 0.0011 34.3 8.2 69 204-301 20-88 (414)
99 COG0303 MoeA Molybdopterin bio 48.4 65 0.0014 33.6 7.6 72 205-307 204-275 (404)
100 TIGR00200 cinA_nterm competenc 47.9 86 0.0019 32.7 8.5 68 205-301 21-88 (413)
101 cd02129 PA_hSPPL_like PA_hSPPL 38.3 1.6E+02 0.0034 25.4 7.3 63 276-338 44-109 (120)
102 PRK03604 moaC bifunctional mol 34.5 1.7E+02 0.0037 29.4 7.9 68 203-298 174-241 (312)
103 PRK10680 molybdopterin biosynt 34.2 2E+02 0.0043 29.9 8.6 72 204-307 204-275 (411)
104 PF13511 DUF4124: Domain of un 33.5 47 0.001 24.4 2.9 28 292-319 4-33 (60)
105 cd00887 MoeA MoeA family. Memb 32.5 1.8E+02 0.0038 29.9 7.9 68 204-301 195-262 (394)
106 PRK14690 molybdopterin biosynt 30.4 2.3E+02 0.0049 29.6 8.3 70 205-306 221-290 (419)
107 PF02374 ArsA_ATPase: Anion-tr 28.7 2.6E+02 0.0056 27.7 8.1 119 96-223 113-241 (305)
108 PF03437 BtpA: BtpA family; I 27.9 1.1E+02 0.0023 30.0 5.0 82 295-386 134-230 (254)
109 PRK09417 mogA molybdenum cofac 26.3 3.1E+02 0.0066 25.6 7.6 69 204-299 23-93 (193)
110 PLN02699 Bifunctional molybdop 25.3 2.7E+02 0.0059 30.9 8.2 71 205-306 210-280 (659)
111 PRK14498 putative molybdopteri 25.0 2.7E+02 0.0059 30.4 8.1 70 205-306 214-283 (633)
112 cd04819 PA_2 PA_2: Protease-as 24.1 3.4E+02 0.0074 23.1 7.0 63 276-338 44-114 (127)
113 PRK14497 putative molybdopteri 22.8 3.1E+02 0.0067 29.8 7.8 71 204-306 206-276 (546)
114 PRK14491 putative bifunctional 21.0 3.4E+02 0.0074 29.7 7.8 71 205-307 395-465 (597)
115 PF02601 Exonuc_VII_L: Exonucl 20.9 1.8E+02 0.0039 28.6 5.3 43 225-273 75-117 (319)
116 cd04817 PA_VapT_like PA_VapT_l 20.8 4.5E+02 0.0098 23.2 7.2 67 269-338 50-128 (139)
117 cd02133 PA_C5a_like PA_C5a_lik 20.4 3.7E+02 0.0079 23.2 6.6 63 277-340 48-111 (143)
No 1
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-71 Score=545.13 Aligned_cols=363 Identities=63% Similarity=0.919 Sum_probs=325.2
Q ss_pred Ccccccccccc-cccccc--cccccchhcccccccccccceeeccCCCcccceeEeeecccchhhhcccccccccccCCC
Q 016545 2 ANTMQFSSIIQ-KNSLHC--QALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESE 78 (387)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (387)
++++|++|+.+ +.++.. ..-.+++..|+.-.+++.+.++ .++||.. ++|++|+..++...+++.+++...+. +
T Consensus 1 ~a~~~~~~~~~~~l~l~~~r~~~~~~~~~f~~~~~~~~~~~~--~~s~~~i-~~~~~~~~~r~~l~~~k~~e~~~s~g-~ 76 (559)
T KOG0456|consen 1 MASTQVYGVKTPRLALTSKRLEFSSKGVDFSTLKKSSLPIGR--GSSCRNI-SLRVSCEAVRVVLLERKNPETDPSNG-E 76 (559)
T ss_pred CCceeEEeecCCCcccccccccccccCccchhhccccccccC--Cccceec-eeeeeeeeeeEeeecccCcccCccCC-C
Confidence 45788988743 332221 2223445556555554443333 4556666 89999999999888888888754544 7
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
++-|+|+||||||+++++++..++..+..+++++++||+|||+++||.|+..++++..|+..+.+..++++.|++.|++.
T Consensus 77 k~~~~V~KFGGsSV~s~~~~i~v~~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~t 156 (559)
T KOG0456|consen 77 KGLTCVMKFGGSSVGSAERMIEVAVLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRT 156 (559)
T ss_pred cceEEEEecCCccccccchhhhhhHHHHhcCCCCeEEEEEccccchhhhhhhhhheecccccCcchHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
+++|+.+...+.++++.|+|+|+++++++|++++++||+++|||+||+++|++||+..|++|.++|.+++++++.+++.+
T Consensus 157 a~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~ 236 (559)
T KOG0456|consen 157 AHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTN 236 (559)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCC
Q 016545 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (387)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr 318 (387)
.++++.+++.+.+.+...|..++.|||++||.|..++.|..+++||||||++|+.||.+||++++++|+|||||+|+|||
T Consensus 237 ~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~ 316 (559)
T KOG0456|consen 237 DDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPR 316 (559)
T ss_pred hhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCc
Confidence 99999999988888888887888999999999977789999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 319 IHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 319 ~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
++|.|+++|.+|++||.||+|||++|+| |..+.++.++.|++.|.|.+.|
T Consensus 317 ~~p~Ar~vp~lT~dEAaELaYfGaqVlH-----P~sM~~~~~~~IPvRvKN~~NP 366 (559)
T KOG0456|consen 317 IYPGARLVPYLTFDEAAELAYFGAQVLH-----PFSMRPAREGRIPVRVKNSYNP 366 (559)
T ss_pred cCCCccccCccCHHHHHHHHhhhhhhcc-----ccccchhhccCcceEeecCCCC
Confidence 9999999999999999999999999998 4567899999999999998776
No 2
>PLN02551 aspartokinase
Probab=100.00 E-value=5.9e-69 Score=560.30 Aligned_cols=326 Identities=73% Similarity=1.070 Sum_probs=290.9
Q ss_pred eccCCCcccceeEeeecccchhhhcccccccccccCCCCCceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCC
Q 016545 41 SVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAM 120 (387)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ 120 (387)
+...++.+++.+++.|..+......+..++........+++++|+|||||||+|+++|++|+++|...++.+++||||||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVvSA~ 91 (521)
T PLN02551 12 RSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGSSVASAERMREVADLILSFPDERPVVVLSAM 91 (521)
T ss_pred ccccccchhHHHHhhhhhhhhHhhhhcccccccccccccCceEEEEECCCccCCHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 44444555557888887776655556666666667778889999999999999999999999999977666799999999
Q ss_pred CcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhh
Q 016545 121 GKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200 (387)
Q Consensus 121 ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~ 200 (387)
+|+||.|+++++.+..++..+.++.+.++.++++|..++++|+.+...+..++++|+++++++.++++++++.+|+|+++
T Consensus 92 ~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~ 171 (521)
T PLN02551 92 GKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171 (521)
T ss_pred CCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhH
Confidence 99999999999988776554456677899999999999999998888899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCcee
Q 016545 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT 280 (387)
Q Consensus 201 GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~t 280 (387)
||+||+.||+++|+++|+++.++|++++||+|+++|+++++.+.+++++++.+...|...+.|||+|||+|.++++|++|
T Consensus 172 GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~t 251 (521)
T PLN02551 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAIT 251 (521)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEE
Confidence 99999999999999999999999999999999999999999887888888887666555678999999999972389999
Q ss_pred eeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHH
Q 016545 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVR 360 (387)
Q Consensus 281 tLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~r 360 (387)
|||||||||||++||++|+|++++||||||||||+|||++|+|++|++|||+||.||+||||+|+| |....++++
T Consensus 252 tLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlh-----p~ai~pa~~ 326 (521)
T PLN02551 252 TLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLH-----PQSMRPARE 326 (521)
T ss_pred ecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccC-----HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 556788999
Q ss_pred hcceEEEeeCC
Q 016545 361 ALHETFFESDL 371 (387)
Q Consensus 361 a~i~~~i~~~~ 371 (387)
+.|++.|.|.-
T Consensus 327 ~~Ipi~vknt~ 337 (521)
T PLN02551 327 GDIPVRVKNSY 337 (521)
T ss_pred CCceEEEEecC
Confidence 99999997753
No 3
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=1e-61 Score=473.02 Aligned_cols=273 Identities=31% Similarity=0.428 Sum_probs=239.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCC-------cCchHHHHHhHHHhhcCCCCcchhHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMG-------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~g-------gvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (387)
|+|+|||||||+|+++++++++||+.. .++++||||||+ |+||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~----~~~~~~~~~i~~~ 75 (288)
T cd04245 1 MKVVKFGGSSLASAEQFQKVKAIVKAD-PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAG----EDTESIFEAIVDR 75 (288)
T ss_pred CEEEEECcCccCCHHHHHHHHHHHHhc-CCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcC----cchHHHHHHHHHH
Confidence 689999999999999999999999864 467899999998 5999999998877542 2457789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 155 h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
|..++++|..+.+.+....+.++++.+ ++.+++++.+|+|+++||+||+.||+.+|+++|+++.++|++++++++++
T Consensus 76 h~~~~~~L~~~~~~~~~i~~~~~~l~~---~~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~ 152 (288)
T cd04245 76 YAEIADELGLPMSILEEIAEILENLAN---LDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTD 152 (288)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecC
Confidence 999999998776555555555555443 23457889999999999999999999999999999999999999999999
Q ss_pred CCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
+|+++.+...+.+++.+.+ ..+.|||+|||+|.+ .+|++|+||||||||||+++|.+|+|+++++|||||||||
T Consensus 153 ~~~~a~~~~~~~~~~~~~~-----~~~~v~Vv~Gf~g~~-~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvyt 226 (288)
T cd04245 153 EPGNAQILPESYQKIKKLR-----DSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYA 226 (288)
T ss_pred CccccccchhhHHHHHHHH-----hCCCEEEEeCccccC-CCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceEC
Confidence 9999888666666665544 346899999999998 5999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|||++|+|++|++|||+||.||+++||+|+| +.+...++++.|+++|.+...|
T Consensus 227 aDPr~v~~A~~i~~lsy~EA~ela~~GakVlh-----p~ai~~a~~~~Ipi~v~n~~~p 280 (288)
T cd04245 227 ANPRIVANPKPISEMTYREMRELSYAGFSVFH-----DEALIPAIEAGIPINIKNTNHP 280 (288)
T ss_pred CCCCCCCCCeEeCccCHHHHHHHHHCCCcccC-----HHHHHHHHHCCCcEEEeeCCCC
Confidence 99999999999999999999999999999998 5567889999999999887554
No 4
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-62 Score=499.83 Aligned_cols=274 Identities=37% Similarity=0.577 Sum_probs=236.7
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCCC--CCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~--~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|.|+|+|||||||+|+++|++++++|+++.+ .++|||+|||+++||.|+++++.+..... .. . .++|..
T Consensus 1 m~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~----~~-~----~~~~~~ 71 (447)
T COG0527 1 MRLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD----AV-A----EQRHRD 71 (447)
T ss_pred CceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccc----hh-H----HHHHHH
Confidence 3489999999999999999999999998643 68899999999999999999887654321 11 1 566777
Q ss_pred HHHHhCCCH---HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 158 TVDELGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 158 ~~~~L~~~~---~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
.+.++..+. ..+.....++++.+.++..+++.+++.+|+|+|+||++|+.||+++|+++|++|.++++++.++++++
T Consensus 72 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~ 151 (447)
T COG0527 72 IASELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDS 151 (447)
T ss_pred HHHHHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecC
Confidence 776665443 22344444447788899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecccchHH-HHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccc
Q 016545 235 DFTNADILEATYPA-VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (387)
Q Consensus 235 ~~~~a~i~~~~~~~-i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ 313 (387)
.++++.+....+++ +.+ ++..+.||||+||+|.+ ++|++||||||||||||++||++|+|++++|||||||||
T Consensus 152 ~~~~a~i~~~~~~~~l~~-----~~~~~~v~Vv~GF~G~~-~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~ 225 (447)
T COG0527 152 NHGNARILDEDSERRLLR-----LLEEGKVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVY 225 (447)
T ss_pred cccccccchhhhhhhHHH-----HhcCCcEEEecCceeec-CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 99999886555444 332 23678899999999999 699999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 314 taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|+|||+||+|++|++|||+||.||+|+||||+| |.+.+++.++.|+++|.|...|
T Consensus 226 TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLH-----prav~pa~~~~Ip~~i~~t~~p 280 (447)
T COG0527 226 TADPRIVPDARLLPEISYEEALELAYLGAKVLH-----PRAVEPAMRSGIPLRIKNTFNP 280 (447)
T ss_pred cCCCCCCCcceEcCccCHHHHHHHHHCCchhcC-----HHHHHHHHhcCCcEEEEecCCC
Confidence 999999999999999999999999999999998 5678899999999999998665
No 5
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=2.8e-61 Score=470.72 Aligned_cols=280 Identities=35% Similarity=0.487 Sum_probs=248.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~ 161 (387)
|+|+|||||||+|++++++++++|... +++++||||||+|+||.|+++++.+.++.. ..+.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~--~~~~~~l~~l~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKSD-ASVRLVVVSASAGVTNLLVALADAAESGEE--IESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECccccCCHHHHHHHHHHHhcc-CCCEEEEEeCCCCchHHHHHHHHHHhcCCc--chhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999875 568899999999999999999988765431 23456799999999999999
Q ss_pred hCCCHH---HHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 162 LGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 162 L~~~~~---~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
|..+.+ .|...+++|+++++++.++++++++.+|+|+++||+||+.|++++|+++|+++.++|++++ ++|+++|++
T Consensus 78 L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred hhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCcc
Confidence 987653 6889999999999999999999999999999999999999999999999999999999998 899999998
Q ss_pred ceecc-cchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 239 ADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 239 a~i~~-~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
+++.. .+.+.+.+.+. .+ .++.|||+|||+|.+ .+|++||||||||||+|+++|.+|+|+++++||||||||++||
T Consensus 157 a~~~~~~~~~~~~~~~~-~~-~~~~v~Vv~Gf~g~~-~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP 233 (292)
T cd04258 157 AAPDLNALAELAAKLLK-PL-LAGTVVVTQGFIGST-EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDP 233 (292)
T ss_pred ccccHHHHHHHHHHHHH-Hh-hcCCEEEECCccccC-CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 88743 23344444332 22 345899999999998 5999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+++|+|++|++|||+||.||+++|++|+| +.....++++.|+++|.+...|
T Consensus 234 ~~~~~a~~i~~isy~Ea~ela~~Gakvlh-----p~a~~~~~~~~ipi~i~~~~~p 284 (292)
T cd04258 234 RICPAARAIKEISFAEAAEMATFGAKVLH-----PATLLPAIRKNIPVFVGSSKDP 284 (292)
T ss_pred CCCCCCeEeceeCHHHHHHHHHCCCcccC-----HHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999999999999999999997 5567889999999999887543
No 6
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=9.5e-61 Score=468.71 Aligned_cols=282 Identities=50% Similarity=0.715 Sum_probs=254.6
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhcC-CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 016545 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (387)
Q Consensus 83 ~V~KFGGSSv~s~e~i~~Va~iI~~~-~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~ 161 (387)
+|+|||||||++++++++++++|... .+++++||||||+|+||.|+++++.+.+.. .+++.+.++.++++|..++++
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~iI~~~~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~--~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 2 LVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGR--IAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999864 356889999999999999999988775421 235677899999999999999
Q ss_pred hCCCH------HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 162 L~~~~------~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
|..+. +.|++++++|+++++++..+++++++.+|+|+++||+||+.|++++|+++|++|+++|+++++++++++
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCc
Confidence 98653 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccccc
Q 016545 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (387)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ta 315 (387)
++++.+...+..++++.+.. +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|++++|||||||||++
T Consensus 160 ~~~a~~~~~~~~~i~~~l~~-ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~ 237 (298)
T cd04244 160 FGNARPLPATYERVRKRLLP-MLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTA 237 (298)
T ss_pred ccccccchhHHHHHHHHHHH-HhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 88877665566777776653 45678899999999998 59999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 316 DPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
||+++|+|++|++|||+||.||+++|++|+| +.++..+.++.|+++|.+...|
T Consensus 238 dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlh-----p~ai~~a~~~~Ipi~i~n~~~p 290 (298)
T cd04244 238 DPRIVPEARTIPRLSYAEAMELAYFGAKVLH-----PRTVEPAMEKGIPVRVKNTFNP 290 (298)
T ss_pred CCCCCCCCeEcCccCHHHHHHHHhCCCcccC-----HHHHHHHHHcCCcEEEeeCCCC
Confidence 9999999999999999999999999999998 5567889999999999887554
No 7
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=1.6e-60 Score=466.18 Aligned_cols=278 Identities=35% Similarity=0.509 Sum_probs=247.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~ 160 (387)
|+|+|||||||+|++++++++++|.... +.+++||||||+|+||.|+++++.+.+.. ..+...++.++++|..+++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~---~~~~~~l~~i~~~h~~~~~ 77 (294)
T cd04257 1 MKVLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASSGD---DAYEDILQELESKHLDLIT 77 (294)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998653 56889999999999999999988776432 2356679999999999999
Q ss_pred HhCCCH------HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 161 ELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 161 ~L~~~~------~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
+|..+. +.|.+.+++|+++++++..+++++++.+|+|+++||+||+.||+++|+++|+++.++|++++ +++++
T Consensus 78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~ 156 (294)
T cd04257 78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG 156 (294)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecC
Confidence 997653 45888999999999999999999999999999999999999999999999999999999996 88999
Q ss_pred CCCCceecc-cchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccc
Q 016545 235 DFTNADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (387)
Q Consensus 235 ~~~~a~i~~-~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ 313 (387)
+|+++.+.. .+.+.+++.+. ..+.|||+|||+|.+ .+|++||||||||||+|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~a~~~~~~~~~~l~~~~~----~~~~v~Vv~Gfig~~-~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvy 231 (294)
T cd04257 157 GYLNAVVDIELSKERIKAWFS----SNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVY 231 (294)
T ss_pred CCCceEechHhhHHHHHHHHh----cCCCEEEecCcccCC-CCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence 999888853 34455554332 227899999999998 599999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 314 taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
++||+++|+|++|++|||+||.+|+++|++|+| +.....++++.|+++|.+...|
T Consensus 232 t~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h-----~~~~~~a~~~~Ipi~i~~~~~p 286 (294)
T cd04257 232 SADPRKVKDARLLPSLSYQEAMELSYFGAKVLH-----PKTIQPVAKKNIPILIKNTFNP 286 (294)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccC-----HHHHHHHHHCCCCEEEeeCCCC
Confidence 999999999999999999999999999999997 4557789999999999887554
No 8
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00 E-value=3.4e-60 Score=463.65 Aligned_cols=277 Identities=36% Similarity=0.553 Sum_probs=246.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~ 161 (387)
|+|+|||||||+|++++++++++|....+.+++||||||+|+||.|+++++.+.+.. ..+.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvSA~~gvTd~L~~~~~~a~~~~---~~~~~~l~~i~~~h~~~~~~ 77 (293)
T cd04243 1 MKVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGD---DAQAIVLQEIRERHLDLIKE 77 (293)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999865456889999999999999999998876532 23444699999999999999
Q ss_pred hCCCH------HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 162 L~~~~------~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
|..+. ..|.+++++|+++++++.++++++++.+|+|+++||+||+.|++++|+++|+++.++|++++ +++++.
T Consensus 78 L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~ 156 (293)
T cd04243 78 LLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDG 156 (293)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHe-EEecCC
Confidence 98654 35889999999999999999999999999999999999999999999999999999999998 888888
Q ss_pred CCCceeccc-chHHHHHHHhhcccCC-CcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccc
Q 016545 236 FTNADILEA-TYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (387)
Q Consensus 236 ~~~a~i~~~-~~~~i~~~l~~~l~~~-~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ 313 (387)
++++.+... +.+.+++.+ .. +.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~~~~~~~s~~~~~~~~-----~~~~~v~Vv~Gfig~~-~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiy 230 (293)
T cd04243 157 FLNAVVDLKLSKERLAQLL-----AEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVY 230 (293)
T ss_pred CCcchhhhHHHHHHHHHHH-----hcCCCEEEecCccccC-CCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 888776432 233444322 33 6899999999998 599999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 314 taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
++||+++|+|++|++|||+||.+|+++|++|+| +.....++++.|+++|.+...|
T Consensus 231 t~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~-----p~ai~~a~~~~i~i~i~~~~~p 285 (293)
T cd04243 231 TADPRKVPDARLLKELSYDEAMELAYFGAKVLH-----PRTIQPAIRKNIPIFIKNTFNP 285 (293)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccC-----HHHHHHHHHCCCcEEEecCCCC
Confidence 999999999999999999999999999999997 4567889999999999888654
No 9
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=7.7e-60 Score=461.42 Aligned_cols=276 Identities=31% Similarity=0.457 Sum_probs=242.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
|+|+|||||||++++++++++++|... .+++++||||||+|+||.|+++++.+.+ ..+.+.++.+.++|.+++
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~-----~~~~~~l~~i~~~~~~~~ 75 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALL-----DEHHSLFNAIQSRHLNLA 75 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhc-----cChHHHHHHHHHHHHHHH
Confidence 789999999999999999999999854 2457899999999999999999887753 225667999999999999
Q ss_pred HHhCCCH-HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 160 DELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 160 ~~L~~~~-~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
++|..+. ..|++.+++|+++++++.++++++++.+|+|+++||+||+.||+++|+++|+++.++|++++ +++++++++
T Consensus 76 ~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 76 EQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 9997554 46899999999999999999999999999999999999999999999999999999999998 777777754
Q ss_pred c-------ee-cccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 239 A-------DI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 239 a-------~i-~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+ .+ .+.+.+++.+.+. ....|||+|||+|.+ .+|++||||||||||+|+++|.+|+|+++++|||||
T Consensus 155 ~~~~~~~a~v~~~~~~~~l~~~l~----~~~~v~Vv~GFig~~-~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~ 229 (295)
T cd04259 155 ETMNYLSARCESEYADALLQKRLA----DGAQLIITQGFIARN-AHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVP 229 (295)
T ss_pred cccccccceehhhhhHHHHHHHHh----cCCceeEeCCceeeC-CCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 3 33 1233444544432 235799999999998 599999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|||++||+++|+|++|++|||+||.+|+++|++++| +.+++.++++.|+++|.+...|
T Consensus 230 Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h-----~~a~~~a~~~~ipi~i~~~~~p 287 (295)
T cd04259 230 GLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLH-----PRCIPPARRANIPMVVRSTERP 287 (295)
T ss_pred ccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccC-----HHHHHHHHHCCCCEEEEeCCCC
Confidence 999999999999999999999999999999999997 5567889999999999887554
No 10
>PRK09034 aspartate kinase; Reviewed
Probab=100.00 E-value=5.4e-59 Score=479.84 Aligned_cols=273 Identities=31% Similarity=0.420 Sum_probs=242.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCc-------CchHHHHHhHHHhhcCCCCcchhHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg-------vTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (387)
|+|+|||||||+|++++++|+++|++. .++++||||||+| +||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~----~~~~~~~~~~~~~ 75 (454)
T PRK09034 1 MKVVKFGGSSLASAEQFKKVLNIVKSD-PERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAG----EDYEDIFEAIIAR 75 (454)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHhcc-CCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcC----CcHHHHHHHHHHH
Confidence 689999999999999999999999864 4578999999986 999999998887652 3567789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 155 h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
|..++++|+.+.+.++...++|+++... +.+++++.+|+|+++||+||+.||+++|+++|+++.++|+++++++|++
T Consensus 76 ~~~~~~~L~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~ 152 (454)
T PRK09034 76 YAEIAKELGLDADILEKIEEILEHLANL---ASRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTD 152 (454)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecC
Confidence 9999999988877666767777776654 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
+|+++.+...+++.+.+.+ ..+.|||+|||+|.+ .+|++||||||||||||+++|++|+|+++++|||||||||
T Consensus 153 ~~~~a~i~~~~~~~~~~~~-----~~~~v~Vv~GFig~~-~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~t 226 (454)
T PRK09034 153 EPGNAQVLPESYDNLKKLR-----DRDEKLVIPGFFGVT-KDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYA 226 (454)
T ss_pred CcCceeEcHhhHHHHHHHH-----hcCCEEEecCccccC-CCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCc
Confidence 9999888665655554322 356799999999998 5999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|||++|+|+++++|||+||.||+++||+|+| +.....++++.|+++|.+...|
T Consensus 227 aDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlh-----p~ai~~a~~~~Ipi~v~~~~~p 280 (454)
T PRK09034 227 ANPRIVKNPKSIKEITYREMRELSYAGFSVFH-----DEALIPAYRGGIPINIKNTNNP 280 (454)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhCCcccCC-----HHHHHHHHHcCCCEEEEcCCCC
Confidence 99999999999999999999999999999998 5567889999999999887554
No 11
>PRK09084 aspartate kinase III; Validated
Probab=100.00 E-value=5.5e-59 Score=479.05 Aligned_cols=276 Identities=33% Similarity=0.458 Sum_probs=244.0
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~ 161 (387)
|+|+|||||||+|++++++|+++|+.. +.+++||||||+|+||.|+++++.+..+ +++.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~~-~~~~vvVVSA~~~~Td~L~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~ 75 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLSN-PNTRLVVLSASAGVTNLLVALAEGAEPG----DERLALLDEIRQIQYAILDR 75 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCchHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999863 5688999999999999999998887642 46778899999999999999
Q ss_pred hCCCH---HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 162 L~~~~---~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
|+.+. ..|.+.+++|+++++++.. +++++.+|+|+++||+||+.|++++|+++|++|.++|++++ ++|+++|++
T Consensus 76 l~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 152 (448)
T PRK09084 76 LGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGR 152 (448)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhhhh--cCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCc
Confidence 97654 4688999999999998876 78889999999999999999999999999999999999998 899999998
Q ss_pred ceeccc-chHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 239 ADILEA-TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 239 a~i~~~-~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
+++... ....+.+.+.+ +++.+ |||++||+|.+ .+|++||||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~-v~Vv~Gf~g~~-~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 153 AEPDVAALAELAQEQLLP-LLAEG-VVVTQGFIGSD-EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred ccccHHHHHHHHHHHHHH-hhcCC-cEEecCeeecC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 877432 22333344433 23555 99999999998 6999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|++|+|++|++|||+||.||+++|++|+| +.+...++++.+++.|.+...|
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh-----~~~~~~~~~~~i~i~i~~~~~~ 280 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLH-----PATLLPAVRSNIPVFVGSSKDP 280 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccC-----HHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999999999999999999997 5567788999999999876443
No 12
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00 E-value=3.8e-58 Score=450.98 Aligned_cols=279 Identities=30% Similarity=0.437 Sum_probs=234.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhc-C-CCCCcEEEEcCCC------cCchHHHHHhHHHhhcCCCCcchhHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILS-F-PNERPVIVLSAMG------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~-~-~~~~~vVVVSA~g------gvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (387)
|+|+|||||||+|++ ++++++|.. . .+.+++||||||+ |+||.|+++++.+.... ..++.+.++.+++
T Consensus 2 ~~V~KFGGtSv~~~~--~~v~~~i~~~~~~~~~~vVVvSA~~~~~~~~gvTd~L~~~~~~a~~~~--~~~~~~~l~~i~~ 77 (306)
T cd04247 2 WVVQKFGGTSVGKFP--DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQ--EKAFHDIVEDIRS 77 (306)
T ss_pred CEEEEeCchhhccHH--HHHHHHHHhhhccCCceEEEEeccccCCCccChHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 789999999999984 789986653 2 3457899999999 99999999998875422 2467888999999
Q ss_pred HHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEeccc
Q 016545 154 LHHRTVDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226 (387)
Q Consensus 154 ~h~~~~~~L~~~~-------~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~ 226 (387)
+|..++++|..+. ..+++.+++|++++.++.++++++++.+|+|+++||+||+.||+++|+++|+++.++|++
T Consensus 78 ~h~~~~~~L~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~ 157 (306)
T cd04247 78 DHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLS 157 (306)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHH
Confidence 9999999997643 357889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEeeCCCCCceecccchHHHHHHHhhcccC-CCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEE
Q 016545 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (387)
Q Consensus 227 d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i 305 (387)
++ +.++... ..+.......+.+.+...+.+ .+.|||+|||+|.+ ++|++||||||||||+|+++|.+|+|++++|
T Consensus 158 ~~-i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~-~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i 233 (306)
T cd04247 158 HI-VDLDFSI--EALDQTFYDELAQVLGEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQI 233 (306)
T ss_pred Hh-eecCCCc--cccccchhHHHHHHHHHHhhccCCceEEeeccEecC-CCCCeEEeCCCchHHHHHHHHHHcCCCEEEE
Confidence 97 4444321 111111112333333322222 45799999999998 5899999999999999999999999999999
Q ss_pred eecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 306 ~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|||||||||+||+++|+|++|++|||+||.||+++||+|+| +....+++++.|++.|.+...|
T Consensus 234 ~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlH-----p~ti~pa~~~~Ipi~i~nt~~P 296 (306)
T cd04247 234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIH-----PFTMEQVIKARIPIRIKNVENP 296 (306)
T ss_pred eecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccC-----HHHHHHHHHcCCcEEEecCCCC
Confidence 99999999999999999999999999999999999999998 5567889999999999887544
No 13
>PRK06291 aspartate kinase; Provisional
Probab=100.00 E-value=5e-57 Score=466.55 Aligned_cols=285 Identities=39% Similarity=0.622 Sum_probs=255.2
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
||+|+|||||||++++++++|+++|++. .+.+++||||||+|+||.|+++++.+...+ ..+++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (465)
T PRK06291 1 MRLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVR-DIAKVKDFIADLRERHYKA 79 (465)
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999864 346889999999999999999988764321 1245778899999999999
Q ss_pred HHHhCCCH-------HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 159 VDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 159 ~~~L~~~~-------~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
+++|..++ ..+...+++|+++++++..+++++++.+|+|+++||+||+.|++++|+++|++|.++|+++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~ 159 (465)
T PRK06291 80 IEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII 159 (465)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEE
Confidence 99996543 35888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
++++|+++.+.+.++.++.+.+.. +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++||||||
T Consensus 160 t~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~vpVv~Gfig~~-~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~G 237 (465)
T PRK06291 160 TDSNFGNARPLPKTYERVKERLEP-LLKEGVIPVVTGFIGET-EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237 (465)
T ss_pred ecCCCCceeechhhHHHHHHHHHH-HhhcCcEEEEeCcEEcC-CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCC
Confidence 999999888766677777766643 45678899999999998 5999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
||++||+++|+|++|++|+|+||.||+++|++++| +..+..+.++.|+++|.+...|
T Consensus 238 i~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~-----~~a~~~~~~~~i~i~i~~~~~~ 294 (465)
T PRK06291 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLH-----PRTIEPAMEKGIPVRVKNTFNP 294 (465)
T ss_pred CCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccC-----HHHHHHHHHcCCcEEEecCCCC
Confidence 99999999999999999999999999999999997 5567889999999999887554
No 14
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=2.6e-56 Score=485.37 Aligned_cols=277 Identities=28% Similarity=0.389 Sum_probs=234.1
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 78 EKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 78 ~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
..|.|+|+|||||||+|++++++|+++|....+.+++||||||+|+||.|+++++.+.. + ...+.+.++.++++|..
T Consensus 8 ~~M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVVSA~~~~Td~L~~~~~~~~~-~--~~~~~~~l~~i~~~h~~ 84 (810)
T PRK09466 8 GAMGRQLHKFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQT-D--RLSAHQVQQTLRRYQQD 84 (810)
T ss_pred ccceeEEEEECccccCCHHHHHHHHHHHhhhccCCEEEEEcCCCCCHHHHHHHHHHhhc-C--chhHHHHHHHHHHHHHH
Confidence 45678999999999999999999999998765556899999999999999998886532 1 23456779999999999
Q ss_pred HHHHhCCCH------HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 158 TVDELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 158 ~~~~L~~~~------~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
++++|..++ +.|.+.+++|++++. ++++++.+|+|+++||+||+.||+++|+++|+++.++|++++ +
T Consensus 85 ~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~--i 157 (810)
T PRK09466 85 LIEGLLPAEQARSLLSRLISDLERLAALLD-----GGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSF--L 157 (810)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHHHHHHhh-----ccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHh--e
Confidence 999997643 235666666666666 478899999999999999999999999999999999999995 5
Q ss_pred eeCCCCCcee-cccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+++++.++.+ ...+.+.+++.+.+ ..+.|||+|||+|.+ .+|++||||||||||||++||++|+|++++||||||
T Consensus 158 ~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~v~Vv~GF~g~~-~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~ 233 (810)
T PRK09466 158 RAERAAQPQVDEGLSYPLLQQLLAQ---HPGKRLVVTGFISRN-EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVA 233 (810)
T ss_pred ecCCCCCcccchhhhHHHHHHHHhc---cCCeEEEeeCccccC-CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 5555555665 23344455444321 134799999999998 599999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
||||+|||++|+|++|++|||+||.||+|+||||+| |...+++++..|++.|.|...|
T Consensus 234 Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlH-----p~ti~pa~~~~Ipi~V~ntf~p 291 (810)
T PRK09466 234 GVYSADPRKVKDACLLPLLRLDEASELARLAAPVLH-----ARTLQPVSGSDIDLQLRCSYQP 291 (810)
T ss_pred ccccCCcccCCCceEcccCCHHHHHHHHHcCccccC-----HHHHHHHHHcCCeEEEecCCCC
Confidence 999999999999999999999999999999999998 5567889999999999877543
No 15
>PRK05925 aspartate kinase; Provisional
Probab=100.00 E-value=8.6e-56 Score=453.71 Aligned_cols=271 Identities=28% Similarity=0.418 Sum_probs=235.5
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
|.|+|+|||||||+|++++++++++|... .+++||||||+|+||.|+++++.+. ....+.++.++++|..++
T Consensus 1 ~~~~V~KFGGtSv~~~e~i~~v~~ii~~~--~~~vVVvSA~~~~Td~L~~~~~~a~------~~~~~~~~~i~~~~~~~~ 72 (440)
T PRK05925 1 MAPLVYKFGGTSLGTAESIRRVCDIICKE--KPSFVVVSAVAGVTDLLEEFCRLSK------GKREALTEKIREKHEEIA 72 (440)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHhcC--CCEEEEECCCCCCHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999863 5689999999999999999887642 223457899999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCc
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (387)
++|..+. .+.+.+++|++++. .++++++.+|+++++||+||+.|++++|+++|+++.++|++++ ++|+++|+++
T Consensus 73 ~~l~~~~-~~~~~~~~L~~~~~----~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a 146 (440)
T PRK05925 73 KELGIEF-SLSPWWERLEHFED----VEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRA 146 (440)
T ss_pred HHhhcch-hhhHHHHHHHHHHH----hCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCcccc
Confidence 9997543 25566677777665 4678889999999999999999999999999999999999998 8999999988
Q ss_pred eecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
++. .+.+.+.+....++++.|||+|||+|.+ ++|+++|||||||||+|+++|.+|+|+++++|||||||||+|||+
T Consensus 147 ~~~---~~~~~~~~~~~~~~~~~v~Vv~GF~g~~-~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~ 222 (440)
T PRK05925 147 VPD---LALMQTAWHELALQEDAIYIMQGFIGAN-SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKI 222 (440)
T ss_pred ccC---HHHHHHHHHHhhccCCcEEEecCcceeC-CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCC
Confidence 873 2334444443334556899999999998 699999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|+|++|++|+|+||.||+++|++++||.+ ...+.++.|+++|.+...|
T Consensus 223 ~~~A~~i~~is~~ea~ela~~Ga~vl~~~~-----~~~a~~~~Ipi~I~~~~~p 271 (440)
T PRK05925 223 IKDAQLIPELSFEEMQNLASFGAKVLHPPM-----LKPCVRAGIPIFVTSTFDV 271 (440)
T ss_pred CCCCeEeeEECHHHHHHHHhCCCCcCCHHH-----HHHHHHCCCcEEEecCCCC
Confidence 999999999999999999999999998665 5889999999999877543
No 16
>PRK08373 aspartate kinase; Validated
Probab=100.00 E-value=4.4e-54 Score=427.56 Aligned_cols=267 Identities=31% Similarity=0.458 Sum_probs=223.7
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC-CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~-~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
.+|+|+|||||||++ ++++++++|... .+++++||||||+|+||.|+++++.+ ..+.++.+.++|.++
T Consensus 3 ~~m~V~KFGGsSv~~--~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~---------~~~~l~~i~~~h~~~ 71 (341)
T PRK08373 3 EKMIVVKFGGSSVRY--DFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETF---------DKEALEEIEEIHEEF 71 (341)
T ss_pred CCCEEEEECCcchHh--HHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHH---------hHHHHHHHHHHHHHH
Confidence 478999999999998 599999999853 35688999999999999999987754 145789999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
+++|+.+.. ...++|+++++.+..+ ++++.+|+|+|+||++|+.+++.+|+++|+++.+++++++ +.+++++++
T Consensus 72 ~~~L~~~~~---~~~~~l~~~~~~~~~~--~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 145 (341)
T PRK08373 72 AKRLGIDLE---ILSPYLKKLFNSRPDL--PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGN 145 (341)
T ss_pred HHHhccchh---hHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccc
Confidence 999987653 3445566666553322 4578899999999999999999999999999999999998 888888988
Q ss_pred ceecc-cchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 239 ADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 239 a~i~~-~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
+++.. .+...+ +.+. .+++.+.|||++||+| + .+|.++|||||||||+|++||.+|+|++++|||||||||++||
T Consensus 146 a~i~~~~s~~~~-~~l~-~~l~~g~VpVv~Gf~g-~-~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP 221 (341)
T PRK08373 146 AFIDIKKSKRNV-KILY-ELLERGRVPVVPGFIG-N-LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADP 221 (341)
T ss_pred eeechhhhhhhH-HHHH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 87721 111111 1222 2346789999999999 6 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+++|+|++|++|||+||.||+++||+++| +.....+.+ .|+++|.+...+
T Consensus 222 ~~v~~A~~i~~isy~Ea~ela~~Gakvlh-----p~ai~~a~~-~Ipi~v~~t~~~ 271 (341)
T PRK08373 222 KLVPSARLIPYLSYDEALIAAKLGMKALH-----WKAIEPVKG-KIPIIFGRTRDW 271 (341)
T ss_pred CCCCCCeEcccCCHHHHHHHHHCcChhhh-----HHHHHHHHc-CCcEEEecCCCC
Confidence 99999999999999999999999999998 455667777 899998776443
No 17
>PRK09181 aspartate kinase; Validated
Probab=100.00 E-value=4.5e-54 Score=444.49 Aligned_cols=273 Identities=24% Similarity=0.269 Sum_probs=220.1
Q ss_pred CCceEEEEeCccccCCHHHHHHHHH-HHhcCC----CCCcEEEEcCCCcCchHHHHHhHHH-------hhcCCCCcchhH
Q 016545 79 KQLTCVMKFGGSSLASAERMREVAE-LILSFP----NERPVIVLSAMGKTTNKLLLAGEKA-------VSCGVTNISCID 146 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s~e~i~~Va~-iI~~~~----~~~~vVVVSA~ggvTd~Ll~~~~~a-------~~~~~~~~~~~~ 146 (387)
+|+.+|+||||||| +++++|.+ |+...+ ..+++||||||||+||.|+++++.+ +..+ ..+++.+
T Consensus 1 ~~~~~V~KFGGtSv---~~~~~v~~~iv~~~~~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (475)
T PRK09181 1 MMMHTVEKIGGTSM---SAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLEHKKTGEPGVYALFAKA-NDEAWRE 76 (475)
T ss_pred CCceEEEEECCCcH---HHHHHHHhheEeccccccCCCCeEEEEeCCCcchHHHHHhHhhcchhHHHHHHHh-cCccHHH
Confidence 35679999999999 45556666 555431 2578999999999999999876511 1110 2346778
Q ss_pred HHHHHHHHHHHHHHHhCCCH-------HH-------HHHHHHHHHHHHH-HhhhccCCChhHHHHHhhhhhHHHHHHHHH
Q 016545 147 ELSFVKDLHHRTVDELGIDR-------SI-------IATHLEELEQLLK-GIAMLKELTPRSRDYLVSFGECMSTRIFAA 211 (387)
Q Consensus 147 ~l~~i~~~h~~~~~~L~~~~-------~~-------I~~~~~~L~~ll~-gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~ 211 (387)
.++.|+++|..++++|..+. +. +.+.|.++++++. ++.++++++++.+|+|+|+||+||+.||+.
T Consensus 77 ~l~~i~~~~~~i~~~L~~~~~~~~~~~~~i~~~~~~~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~ 156 (475)
T PRK09181 77 ALEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTAL 156 (475)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHH
Confidence 89999999999999997421 22 3667777888777 888899999999999999999999999999
Q ss_pred HHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHH
Q 016545 212 YLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291 (387)
Q Consensus 212 ~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tA 291 (387)
+|+++|++|.++|+..+. .++ +.. ..+++++.+.. |...+.|||+|||++ + ++|++||||||||||||
T Consensus 157 ~L~~~Gi~a~~ld~~~~~--~~~------~~~-~~~~i~~~l~~-~~~~~~v~Vv~GF~~-~-~~G~itTLGRGGSDyTA 224 (475)
T PRK09181 157 LLQNRGVNARFVDLTGWD--DDD------PLT-LDERIKKAFKD-IDVTKELPIVTGYAK-C-KEGLMRTFDRGYSEMTF 224 (475)
T ss_pred HHHhCCCCeEEecccccc--CCc------ccc-hHHHHHHHHhh-hccCCcEEEecCCcC-C-CCCCEEecCCChHHHHH
Confidence 999999999999876541 111 111 23455554432 223567999999975 5 47999999999999999
Q ss_pred HHHHHHcCCceEEEeecCCcccccCCCCC--CCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEee
Q 016545 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFES 369 (387)
Q Consensus 292 a~LA~aL~A~~v~i~TDVdGV~taDPr~v--~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~ 369 (387)
++||++|+|++++|||||+ |||+|||+| |+|++|++|||+||.||+|+||||+| |....+++++.|++.|.|
T Consensus 225 ailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLH-----p~ti~pa~~~~Ipi~V~n 298 (475)
T PRK09181 225 SRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIH-----PKAAKGLRQAGIPLRIKN 298 (475)
T ss_pred HHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcC-----HHHHHHHHHcCCeEEEec
Confidence 9999999999999999997 999999999 69999999999999999999999998 566788999999999988
Q ss_pred CCcc
Q 016545 370 DLAN 373 (387)
Q Consensus 370 ~~~~ 373 (387)
...|
T Consensus 299 t~~p 302 (475)
T PRK09181 299 TFEP 302 (475)
T ss_pred CCCC
Confidence 7543
No 18
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=4.4e-53 Score=461.96 Aligned_cols=277 Identities=29% Similarity=0.439 Sum_probs=240.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~ 160 (387)
|+|+|||||||+++++++++++||++.. +++++||||||+|+||.|+++++.+.+.. ..+...++.++++|. +++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vVVVSA~~~vTd~L~~~~~~~~~~~---~~~~~~~~~~~~~h~-~~~ 76 (819)
T PRK09436 1 MRVLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAAKGD---DAYPEILDAERIFHE-LLD 76 (819)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhcccCCEEEEEcCCcCcHHHHHHHHHHHhcCC---chHHHHHHHHHHHHH-HHH
Confidence 6899999999999999999999998653 35889999999999999999998876522 345667888999994 333
Q ss_pred Hh---CCC------HHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 161 EL---GID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 161 ~L---~~~------~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
.| ... .+.|.++|++|+++++++.++++++++.+|+|+++||+||+.||+++|+++|+++.++|++++ ++
T Consensus 77 ~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~ 155 (819)
T PRK09436 77 GLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPREL-LL 155 (819)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHe-EE
Confidence 33 111 246889999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eeCCCCCcee-cccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
|++.|+++.+ ++.+.+.+++.+ ...+.|||+|||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||
T Consensus 156 t~~~~~~~~~~~~~~~~~i~~~~----~~~~~v~Vv~Gfig~~-~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVd 230 (819)
T PRK09436 156 ADGHYLESTVDIAESTRRIAASF----IPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVD 230 (819)
T ss_pred ecCCCCCceechHhhHHHHHHHH----hcCCcEEEecCcccCC-CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCC
Confidence 8888888877 334444444433 2457899999999998 699999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
||||+|||++|+|++|++|||+||.+|+++|++|+| +.++..++++.|+++|.+...|
T Consensus 231 Gvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlh-----p~a~~~a~~~~Ipi~i~n~~~p 288 (819)
T PRK09436 231 GVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLH-----PRTIAPIAQFQIPCLIKNTFNP 288 (819)
T ss_pred ceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccch-----HHHHHHHHHCCceEEEccCCCC
Confidence 999999999999999999999999999999999997 5567889999999999876443
No 19
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=4.9e-52 Score=456.67 Aligned_cols=284 Identities=26% Similarity=0.384 Sum_probs=240.9
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHH
Q 016545 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (387)
Q Consensus 78 ~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h 155 (387)
..|.|+|+|||||||+|++++++++++|+.. .+++++||||||+|+||.|+++++.+.+ .++.+.++.++++|
T Consensus 5 ~~~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~-----~~~~~~~~~i~~~~ 79 (861)
T PRK08961 5 STDRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGA-----GDSASRVAAIRQRH 79 (861)
T ss_pred CCCCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhc-----cCHHHHHHHHHHHH
Confidence 4478999999999999999999999999853 2468899999999999999998876543 34678899999999
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 156 HRTVDELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 156 ~~~~~~L~~~~-~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
..++++|+.+. +.|.+.+++|+++++++..+++++++.+|+++++||+||+.||+++|++.|+++.++|++++ +++++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-~~~~~ 158 (861)
T PRK08961 80 RELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW-LTALP 158 (861)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh-EeecC
Confidence 99999997654 36899999999999999999999999999999999999999999999999999999999998 55555
Q ss_pred CC-C--Cceecccch-HHHHHHHhhcccCC-CcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 235 DF-T--NADILEATY-PAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 235 ~~-~--~a~i~~~~~-~~i~~~l~~~l~~~-~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
++ . ......... ......+...+... ..|||+|||+|.+ .+|++|||||||||++|+++|.+|+|+++++||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~-~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv 237 (861)
T PRK08961 159 QPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARN-ADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDV 237 (861)
T ss_pred ccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeC-CCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCC
Confidence 22 1 122211110 11122222222333 3599999999998 59999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|||||+|||++|+|++|++|||+||.||+++|++|+| +.++..++++.|+++|.+...|
T Consensus 238 ~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~-----~~a~~~a~~~~i~i~v~~~~~~ 296 (861)
T PRK08961 238 PGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH-----PRSIKPCRDAGIPMAILDTERP 296 (861)
T ss_pred CccccCCCCCCCCceEecccCHHHHHHHHHCCCeEEC-----HHHHHHHHHCCCCEEEEeCCCC
Confidence 9999999999999999999999999999999999997 5567889999999999877543
No 20
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=100.00 E-value=3.3e-51 Score=398.92 Aligned_cols=270 Identities=24% Similarity=0.291 Sum_probs=215.0
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhcCCC--CCcEEEEcCCCcCchHHHHHhHHHhhcC------CCCcchhHHHHHHHHH
Q 016545 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCG------VTNISCIDELSFVKDL 154 (387)
Q Consensus 83 ~V~KFGGSSv~s~e~i~~Va~iI~~~~~--~~~vVVVSA~ggvTd~Ll~~~~~a~~~~------~~~~~~~~~l~~i~~~ 154 (387)
.|+|||||||++++.++. +||...+. ..+|+||||.+|+||.|++.-..- +.| .....|.+.|+.+.++
T Consensus 2 ~V~K~GGTSms~~~~~~d--~i~~~~~~~~~~rv~VVSA~~gvT~~Lle~k~t~-~~gv~~~~~~~~~~~~~al~~~~~~ 78 (304)
T cd04248 2 TVEKIGGTSMSAFGAVLD--NIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTG-APGIYQHFVDADEAWREALSALKQA 78 (304)
T ss_pred ceeeecCcccccHHHHhh--hHhcCCcccCccEEEEEECCccchHHHHHhhhcC-CcchhHHHhcCchHHHHHHHHHHHH
Confidence 599999999999999988 77764222 268999999999999999742210 000 0123477789999999
Q ss_pred HHHHHHHhCCC-------HHHHHHHHHH-------HHHHH-HHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCC
Q 016545 155 HHRTVDELGID-------RSIIATHLEE-------LEQLL-KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVK 219 (387)
Q Consensus 155 h~~~~~~L~~~-------~~~I~~~~~~-------L~~ll-~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~ 219 (387)
|.++..+|..+ .++|.+.+++ +..++ .|+..+++++++.+|+|+|+||++|+.+++.+|++.|++
T Consensus 79 ~~~~~~~l~~~~~~~~~a~~~i~~r~~~~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~ 158 (304)
T cd04248 79 MLKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVN 158 (304)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCC
Confidence 99888777643 1345555444 44444 477788999999999999999999999999999999999
Q ss_pred eEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcC
Q 016545 220 ARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALG 299 (387)
Q Consensus 220 A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~ 299 (387)
|.++|...+. ..+.+. ..+.+.+.+.. +.....|||+|||. .+ .+|+++|||||||||||++||++|+
T Consensus 159 A~~vD~~~~~--~~~~~t-------~~~~i~~~~~~-~~~~~~v~IvtGF~-~~-~~G~itTLGRGGSDyTAs~iAa~l~ 226 (304)
T cd04248 159 ARFVDLSGWR--DSGDMT-------LDERISEAFRD-IDPRDELPIVTGYA-KC-AEGLMREFDRGYSEMTFSRIAVLTG 226 (304)
T ss_pred eEEECccccc--ccCCCC-------cHHHHHHHHHh-hccCCcEEEeCCcc-CC-CCCCEEEcCCCcHHHHHHHHHHHcC
Confidence 9999887641 111111 12445555543 23356799999995 45 4899999999999999999999999
Q ss_pred CceEEEeecCCcccccCCCCC--CCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 300 LQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 300 A~~v~i~TDVdGV~taDPr~v--~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|++++|||||+ |||+|||+| |+|++|++|||+||.||+++||+|+| |..++.++++.|++.|.|.-.|
T Consensus 227 A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLH-----P~ai~pa~~~~IPi~Vkntf~P 296 (304)
T cd04248 227 ASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIH-----PKAAKGLRQAGIPLRVKNTFEP 296 (304)
T ss_pred CCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcC-----HHHHHHHHHcCCeEEEecCCCC
Confidence 99999999995 999999999 58999999999999999999999998 5567899999999999887544
No 21
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=100.00 E-value=1.3e-51 Score=407.81 Aligned_cols=260 Identities=30% Similarity=0.452 Sum_probs=218.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~ 160 (387)
|+|+|||||||+++ +++++++|.... +.+++||||||+|+||.|+++++.+ ..+.++.++++|.++++
T Consensus 1 m~V~KFGGsSv~~~--~~~v~~ii~~~~~~~~~vVVVSA~~gvTd~L~~~~~~~---------~~~~l~~i~~~h~~~~~ 69 (327)
T TIGR02078 1 MIVVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTF---------DKSAALEIEEIYEEFAK 69 (327)
T ss_pred CEEEEECCcchHHH--HHHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 68999999999985 999999998542 4588999999999999999986532 13568899999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCce
Q 016545 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (387)
Q Consensus 161 ~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~ 240 (387)
+|+.+.+.+.+.++++.+. .. -+++..+|+|+++||+||+.|+++ |+++.++|++++ +++++.|+++.
T Consensus 70 ~L~~~~~~~~~~l~~~~~~---~~---l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~ 137 (327)
T TIGR02078 70 ELGVDLNILSPYLKELFNP---PD---LPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAF 137 (327)
T ss_pred HhccchhhhHHHHHHHHhh---hc---cCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCcee
Confidence 9998765555555555443 22 245678999999999999999976 899999999998 88889999888
Q ss_pred ec-ccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 241 IL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 241 i~-~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
+. +.+..+++. +. .+++.+.|||++||+| + .+|.++|||||||||+|+++|.+|+|+.+++||||||||++||++
T Consensus 138 ~~~~~~~~~~~~-l~-~~l~~g~IpVv~Gf~~-~-~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~ 213 (327)
T TIGR02078 138 IDIKKSKRNAKI-LY-EVLESGKIPVIPGFYG-N-LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213 (327)
T ss_pred echhhhHhhHHH-HH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCc
Confidence 74 222222322 22 2346788999999999 6 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|+|++|++|||+||.+|+++||+++| +.+++.+.++.|+++|.+...|
T Consensus 214 v~~A~~i~~lsy~Ea~ela~~Gakvlh-----p~a~~~a~~~~Ipi~I~~t~~~ 262 (327)
T TIGR02078 214 VPSARLIPYLSYEEIKIAAKLGMKALQ-----WKAADLAKEYKIPVLFGRTRDW 262 (327)
T ss_pred CCCceEccccCHHHHHHHHHCCchhhH-----HHHHHHHHHCCCeEEEEeCCCc
Confidence 999999999999999999999999987 5667889999999999887543
No 22
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=100.00 E-value=6.7e-51 Score=418.15 Aligned_cols=271 Identities=34% Similarity=0.505 Sum_probs=229.0
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
||+|+|||||||+|++++++++++|... .+.+++||||||+++||.|+++++.+.... ..+.++.++++|.++
T Consensus 1 ~~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~-----~~~~~~~i~~~~~~~ 75 (441)
T TIGR00657 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGP-----SKEFLEKIREKHIEI 75 (441)
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHH
Confidence 5899999999999999999999999864 245889999999999999999988775321 256789999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
+++|. +. ...+++++++..+.. ...+++.+|+|+++||+||+.+++++|+++|++++++++.+.+++++++|++
T Consensus 76 ~~~l~-~~----~~~~~~~~~~~~~~~-~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~ 149 (441)
T TIGR00657 76 LERLI-PQ----AIAEELKRLLDAELV-LEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGR 149 (441)
T ss_pred HHHhh-hH----HHHHHHHHHHHHHHh-hhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCc
Confidence 99997 32 233334444443322 1223578899999999999999999999999999999999999999998887
Q ss_pred ce-ecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 239 AD-ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 239 a~-i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
+. +.+.+.+.+.+ +++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 150 ~~~~~~~~~~~l~~-----~l~~~~vpVv~G~~g~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP 223 (441)
T TIGR00657 150 ARVIIEILTERLEP-----LLEEGIIPVVAGFQGAT-EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223 (441)
T ss_pred eeecHhhhHHHHHH-----HHhcCCEEEEeCcEeeC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 66 44434433332 34567899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+++|+++++++|+|+||.||+++|++++| +..+..+.+..++++|.+...|
T Consensus 224 ~~~~~a~~i~~is~~ea~el~~~G~~v~~-----~~a~~~~~~~~i~i~i~~~~~~ 274 (441)
T TIGR00657 224 RIVPDARRIDEISYEEMLELASFGAKVLH-----PRTLEPAMRAKIPIVVKSTFNP 274 (441)
T ss_pred CCCCCCeECCccCHHHHHHHHhcCCcccC-----HHHHHHHHHcCCeEEEecCCCC
Confidence 99999999999999999999999999997 4557889999999999987554
No 23
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=2.9e-48 Score=393.33 Aligned_cols=231 Identities=34% Similarity=0.462 Sum_probs=201.2
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|.|+|+|||||||+|++.+++++++|... .+.+++||||||+++||.|++.+...
T Consensus 1 m~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~----------------------- 57 (392)
T PRK08841 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV----------------------- 57 (392)
T ss_pred CCeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh-----------------------
Confidence 46899999999999999999999999853 35688999999999999998743210
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
. ...+++.+|.++++||++|+.|++++|++.|+++.++++++.++++++.+.
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~ 109 (392)
T PRK08841 58 -----D-----------------------SVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHN 109 (392)
T ss_pred -----c-----------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCC
Confidence 0 012446789999999999999999999999999999999999899988887
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
++++...+.+.+.+ +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 110 ~~~i~~~~~~~i~~-----ll~~~~vpVv~Gf~g~~-~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP 183 (392)
T PRK08841 110 DATIKHIDTSTITE-----LLEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183 (392)
T ss_pred CceechhhHHHHHH-----HHhCCCEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCC
Confidence 77775544444433 23567899999999998 5999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCc
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLA 372 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~ 372 (387)
|++|+|++|++|+|+||.||+++|++|+| +..+..++++.|+++|.+...
T Consensus 184 ~~v~~A~~i~~is~~ea~ela~~Ga~vlh-----p~ai~~a~~~~Ipi~i~n~~~ 233 (392)
T PRK08841 184 RVVKNARKLDVIDFPSMEAMARKGAKVLH-----LPSVQHAWKHSVPLRVLSSFE 233 (392)
T ss_pred CCCCCceEcccccHHHHHHHHhcCccccC-----HHHHHHHHHCCCeEEEEecCC
Confidence 99999999999999999999999999998 556888999999999987754
No 24
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=2.1e-44 Score=365.32 Aligned_cols=232 Identities=37% Similarity=0.527 Sum_probs=201.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
|++|+|||||++.+++.+++++++|+.. .+.+++||+||++++|+.|+++++....
T Consensus 1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~---------------------- 58 (401)
T TIGR00656 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR---------------------- 58 (401)
T ss_pred CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhc----------------------
Confidence 5689999999999999999999999753 3568899999999999999876431100
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
...++..+|+++++||++|+.+++++|+++|+++.++++.+.++++++.+++
T Consensus 59 ----------------------------~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~ 110 (401)
T TIGR00656 59 ----------------------------DAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110 (401)
T ss_pred ----------------------------cCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCc
Confidence 1235567899999999999999999999999999999999998999998888
Q ss_pred ceecccch-HHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 239 a~i~~~~~-~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
+++.+... +.+.+ +++.+.|||++||+|.+ .+|.++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 111 ~~~~~~~~~~~l~~-----~l~~~~vpVi~g~~~~~-~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP 184 (401)
T TIGR00656 111 AKIDIIATEERLLP-----LLEEGIIVVVAGFQGAT-EKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDP 184 (401)
T ss_pred eEeeecchHHHHHH-----HHhCCCEEEecCcceeC-CCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 77755444 33332 24568899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+++|+|+++++|||+||.||+++|++++| +..+..+.++.|+++|.+...|
T Consensus 185 ~~~~~a~~i~~ls~~ea~~l~~~G~~v~~-----~~a~~~a~~~~i~i~i~~~~~~ 235 (401)
T TIGR00656 185 RVVEAAKRIDKISYEEALELATFGAKVLH-----PRTVEPAMRSGVPIEVRSSFDP 235 (401)
T ss_pred CCCCCcEECCccCHHHHHHHHHcCCcccC-----HHHHHHHHHCCCeEEEEECCCC
Confidence 99999999999999999999999999997 5567789999999999887543
No 25
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=352.57 Aligned_cols=230 Identities=35% Similarity=0.503 Sum_probs=200.5
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|+++|+|||||++.+++.++++++.|... .+.+++||+||++++||+|++......
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~---------------------- 58 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS---------------------- 58 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc----------------------
Confidence 56899999999999999999999999854 245889999999999999987532110
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
...++..+|.++++||++|+.+++.+|+++|++++++++.+++++++++|+
T Consensus 59 -----------------------------~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~ 109 (404)
T PRK06635 59 -----------------------------PLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHG 109 (404)
T ss_pred -----------------------------cCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCC
Confidence 001446778999999999999999999999999999999999899988888
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
++++...+.+.+++. ++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 110 ~~~~~~~~~~~l~~~-----l~~~~ipVi~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP 183 (404)
T PRK06635 110 KARITDIDPSRIREA-----LDEGDVVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDP 183 (404)
T ss_pred ceEeeecCHHHHHHH-----HhCCCEEEecCccEeC-CCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCC
Confidence 888766555555432 3568899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCC
Q 016545 318 NIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDL 371 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~ 371 (387)
|++|++++|++|+|+|+.+|+++|++++| +.++..+.++.++++|.+..
T Consensus 184 ~~~~~a~~i~~i~~~e~~~l~~~g~~~~~-----~~a~~~~~~~~i~~~i~~~~ 232 (404)
T PRK06635 184 RIVPKARKLDKISYEEMLELASLGAKVLH-----PRSVEYAKKYNVPLRVRSSF 232 (404)
T ss_pred CCCCCceECCccCHHHHHHHHHcCCcccC-----HHHHHHHHHcCceEEEEcCC
Confidence 99999999999999999999999999987 55678899999999998764
No 26
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=1.4e-42 Score=327.76 Aligned_cols=217 Identities=42% Similarity=0.702 Sum_probs=187.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcC-CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~-~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~ 160 (387)
|+|+||||||+.+++.+++++++|... .+.++|||+||++++|+.|+++.
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~----------------------------- 51 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA----------------------------- 51 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH-----------------------------
Confidence 689999999999999999999999864 35688999999999999887531
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCce
Q 016545 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (387)
Q Consensus 161 ~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~ 240 (387)
.++++||.+|+.+++++|+++|+++.++++.++.+.+++.+...+
T Consensus 52 -----------------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~ 96 (227)
T cd04234 52 -----------------------------------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAAR 96 (227)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhh
Confidence 578899999999999999999999999999998555544323333
Q ss_pred ecccchHHHHHHHhhcccCC-CcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 241 ILEATYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 241 i~~~~~~~i~~~l~~~l~~~-~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
+.+.+.+.+++ +++. +.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||+.
T Consensus 97 ~~~~~~~~l~~-----~l~~~~~vpVv~g~i~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 97 IIEISYERLKE-----LLAEIGKVPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred HHHHHHHHHHH-----HHhhCCCEEEecCceecC-CCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 33333333333 2456 8999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|++++|++|+|+|+.+|+++|++++| +.+++.+.++.++++|.+...|
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~-----~~a~~~a~~~~i~i~i~~~~~~ 219 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLH-----PRAVEPARKANIPIRVKNTFNP 219 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccC-----HHHHHHHHHcCCeEEEEeCCCC
Confidence 999999999999999999999999886 5667889999999999988654
No 27
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=4.4e-42 Score=326.36 Aligned_cols=230 Identities=34% Similarity=0.498 Sum_probs=198.5
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
..|+||||+++.+++.++++++.|.... +.+++||+||+++.+++|++..+...
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------------------------ 56 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------------------------ 56 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------------------------
Confidence 3699999999999999999999997643 45889999999999999987532210
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCc
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (387)
...+.+.+|.++++||++|+.+++++|+++|++++++++.+++++++++|+++
T Consensus 57 ---------------------------~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04261 57 ---------------------------PRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcc
Confidence 11234677889999999999999999999999999999999988998888777
Q ss_pred eecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
++...+.+.+++ +++.+.|||++||+|.+ .+|.++++|||++|++|+++|.+|+|+++++||||||||++||+.
T Consensus 110 ~i~~~~~~~l~~-----ll~~~~ipVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~ 183 (239)
T cd04261 110 RIIDIDPDRIRE-----LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHHcCCeEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCC
Confidence 775544444443 24568999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|++++|++|+|+|+.+|+++|++++| +.+++.+.++.++++|.+...|
T Consensus 184 ~~~a~~i~~i~~~ea~~l~~~G~~~~~-----~~a~~~~~~~~i~i~I~n~~~~ 232 (239)
T cd04261 184 VPKARKLDEISYDEMLEMASLGAKVLH-----PRSVELAKKYGVPLRVLSSFSE 232 (239)
T ss_pred CCCceEccccCHHHHHHHHhccccccC-----HHHHHHHHHcCCeEEEecCCCC
Confidence 999999999999999999999999886 4567789999999999887554
No 28
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=4.8e-42 Score=325.97 Aligned_cols=230 Identities=35% Similarity=0.512 Sum_probs=198.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
|+|+||||+++.+++.++++++.|.... +.+++||+||+++.+++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~------------------------ 56 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVS------------------------ 56 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhc------------------------
Confidence 6899999999999999999999997643 45889999999999999987532110
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCc
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (387)
...+...+|.++++||++|+.+++++|+++|++++++++.+..+++.++|+++
T Consensus 57 ---------------------------~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04246 57 ---------------------------PRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCce
Confidence 01134667889999999999999999999999999999999888888888877
Q ss_pred eecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
++...+.+.+.+ +++.+.|||++||+|.+ .+|.++++|||++|++|+++|.+|+|+++++||||||||++||+.
T Consensus 110 ~~~~~~~~~l~~-----ll~~g~ipVi~g~~~~~-~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~ 183 (239)
T cd04246 110 RIIDIDPKRILE-----ALEEGDVVVVAGFQGVN-EDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHhcCCEEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCC
Confidence 775544444443 24568899999999988 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|++++|++|+|+|+.+|+++|++++| +.+++.+.++.|+++|.+..++
T Consensus 184 ~~~a~~i~~l~~~e~~~l~~~G~~~~~-----~~a~~~a~~~gi~i~i~~~~~~ 232 (239)
T cd04246 184 VPKARKLDVISYDEMLEMASLGAKVLH-----PRSVELAKKYNVPLRVRSSFSE 232 (239)
T ss_pred CCCCeEcccCCHHHHHHHHhCCCcccC-----HHHHHHHHHCCCeEEEecCCCC
Confidence 999999999999999999999999886 5567889999999999988654
No 29
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=3.7e-42 Score=364.87 Aligned_cols=231 Identities=33% Similarity=0.459 Sum_probs=200.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|.|+|+||||||++|++.+++++++|... .+.+++||+||+|++||+|++++...
T Consensus 1 m~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~----------------------- 57 (587)
T PRK07431 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEI----------------------- 57 (587)
T ss_pred CCeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHh-----------------------
Confidence 46899999999999999999999999853 24578999999999999998643211
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
..+.+...+|+++++||++|+.|++.+|+++|++++++++.++++++++.++
T Consensus 58 ----------------------------t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~ 109 (587)
T PRK07431 58 ----------------------------SSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHG 109 (587)
T ss_pred ----------------------------ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCC
Confidence 0123446779999999999999999999999999999999999899988888
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccC-CCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccC
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~-~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taD 316 (387)
.+++.....+.+.+. ++.+.|||++||+|.+. .+|+++|+||||||++|++||.+|+|+++++||||||||++|
T Consensus 110 ~~~i~~~~~~~l~~~-----l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~D 184 (587)
T PRK07431 110 RARILEIKTDRIQRH-----LDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTD 184 (587)
T ss_pred ceeeeeccHHHHHHH-----HhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCC
Confidence 788766665555442 35678999999999752 248899999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCC
Q 016545 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDL 371 (387)
Q Consensus 317 Pr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~ 371 (387)
|+++|+|++|++|+|+||.+|+++|++++| +.++..+.++.++++|.+..
T Consensus 185 P~~~~~a~~i~~i~~~e~~el~~~G~~v~~-----~~a~~~~~~~~i~i~i~~~~ 234 (587)
T PRK07431 185 PRLVPEAQLMDEISCDEMLELASLGASVLH-----PRAVEIARNYGVPLVVRSSW 234 (587)
T ss_pred CCCCCCCeECCCcCHHHHHHHHhCCCceEh-----HHHHHHHHHcCCcEEEecCC
Confidence 999999999999999999999999999987 56688999999999998764
No 30
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=6.8e-42 Score=347.69 Aligned_cols=231 Identities=34% Similarity=0.512 Sum_probs=196.6
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCc-----CchHHHHHhHHHhhcCCCCcchhHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGK-----TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg-----vTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (387)
|.+.|+|||||++.+.+.++++++.|... .+.+++||+||||+ +|+.|+.......
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~----------------- 63 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF----------------- 63 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----------------
Confidence 46799999999999999999999888743 24578999999876 5877765322100
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEe
Q 016545 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (387)
Q Consensus 153 ~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit 232 (387)
...++..+|.++++||++|+.+++++|+++|++++++++.+.++++
T Consensus 64 ----------------------------------~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t 109 (403)
T PRK08210 64 ----------------------------------SEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIIT 109 (403)
T ss_pred ----------------------------------cCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEc
Confidence 1124567788999999999999999999999999999999988999
Q ss_pred eCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcc
Q 016545 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (387)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV 312 (387)
+++++++++...+.+.+.+ +++.+.|||++||+|.+ .+|+++|+||||||++|++||.+|+|+++++|||||||
T Consensus 110 ~~~~~~~~v~~~~~~~l~~-----~l~~~~vpVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV 183 (403)
T PRK08210 110 DDNFTNAKIIEVNPDRILE-----ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGI 183 (403)
T ss_pred cCCCCceeeehhhHHHHHH-----HHhcCCEEEeeCeeecC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9988877775544444433 23567899999999988 59999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCc
Q 016545 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLA 372 (387)
Q Consensus 313 ~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~ 372 (387)
|++|||++|++++|++|||+||.+|+++|++|+| +.+++.+.++.+++.|.+...
T Consensus 184 ~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~-----~~a~~~~~~~~i~i~i~~~~~ 238 (403)
T PRK08210 184 MTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIH-----PRAVEIAMQANIPLRIRSTYS 238 (403)
T ss_pred CcCCCCcCCCCeECCccCHHHHHHHHHCCccccC-----HHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999999999999999999999997 556788999999999988643
No 31
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=2.7e-41 Score=322.27 Aligned_cols=229 Identities=31% Similarity=0.523 Sum_probs=194.4
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhcCC--CCCcEEEEcCCCcC-----chHHHHHhHHHhhcCCCCcchhHHHHHHHHHH
Q 016545 83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKT-----TNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (387)
Q Consensus 83 ~V~KFGGSSv~s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggv-----Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h 155 (387)
+|+|||||++.|++.++++++.|.... +.+++||+||+|+. |+.|++...
T Consensus 2 ~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~----------------------- 58 (244)
T cd04260 2 IVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVY----------------------- 58 (244)
T ss_pred EEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHH-----------------------
Confidence 699999999999999999999998642 44789999998763 444432210
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 156 ~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
..+ ...++..++.++++||.+++.+++.+|+++|++++++++.+.++++.+.
T Consensus 59 -----~~~-----------------------~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~ 110 (244)
T cd04260 59 -----AEN-----------------------SDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDN 110 (244)
T ss_pred -----hhc-----------------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCC
Confidence 000 1235567889999999999999999999999999999999999999998
Q ss_pred CCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccccc
Q 016545 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (387)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ta 315 (387)
++++++...+.+.+.+. ++.+.|||++||+|.+ .+|+++++||||+|++|++||.+|+|+++++||||||||++
T Consensus 111 ~~~~~v~~~~~~~l~~l-----l~~g~VPVv~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~ 184 (244)
T cd04260 111 YSNAKIIKVNPKKILSA-----LKEGDVVVVAGFQGVT-EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTA 184 (244)
T ss_pred CCceeeeccCHHHHHHH-----HhCCCEEEecCCcccC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcC
Confidence 88777755555555432 3568899999999998 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 316 DPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
||+.+|++++|++|+|+|+.+|+++|++++| +.+++.+.+..++++|.+...+
T Consensus 185 dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~-----~~a~~~~~~~~i~v~I~~~~~~ 237 (244)
T cd04260 185 DPRVVPNARILDVVSYNEVFQMAHQGAKVIH-----PRAVEIAMQANIPIRIRSTMSE 237 (244)
T ss_pred CCCCCCCCeEcccCCHHHHHHHHHcCchhcC-----HHHHHHHHHcCCeEEEecCCCC
Confidence 9999999999999999999999999999986 5567789999999999988644
No 32
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=7.8e-35 Score=275.48 Aligned_cols=242 Identities=35% Similarity=0.476 Sum_probs=197.2
Q ss_pred EEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 016545 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (387)
Q Consensus 84 V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~ 161 (387)
|+||||+++.+.+.++++++.|+.. .+.++|+|+||++..++.+.+....+
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~--------------------------- 53 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL--------------------------- 53 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhh---------------------------
Confidence 7899999999999999999999864 24588999999999998887643211
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC-ce
Q 016545 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN-AD 240 (387)
Q Consensus 162 L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~-a~ 240 (387)
.+..+ ...+....+.++++||.+++.++.++|++.|+++.++++.+..+... +++. ..
T Consensus 54 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-~~~~~g~ 112 (248)
T cd02115 54 ----------------GYARG----LRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASP-NQGHVGK 112 (248)
T ss_pred ----------------hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeC-CCCCccc
Confidence 00000 12455778899999999999999999999999999999999855544 4443 44
Q ss_pred ecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCC
Q 016545 241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320 (387)
Q Consensus 241 i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v 320 (387)
+...+.+.+++. ++.+.|||++||.+.+. + +.++++|++||++|+.+|.+|+|+++++||||||||++||+++
T Consensus 113 ~~~~~~~~l~~~-----l~~~~ipVv~g~~~~~~-~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~ 185 (248)
T cd02115 113 ITKVSTDRLKSL-----LENGILPILSGFGGTDE-K-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKV 185 (248)
T ss_pred ceeeCHHHHHHH-----HhCCcEEEecCeEeccC-C-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcC
Confidence 445555555543 35688999999999873 4 6788999999999999999999999999999999999999999
Q ss_pred CCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc--ccccccCCCCcc
Q 016545 321 PHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN--LDCVCGSENNSS 385 (387)
Q Consensus 321 ~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~--~~~~~g~~~g~~ 385 (387)
|++++|++|+|+|+.+|+++|+.+++ ...+..+.+..++++|.+...+ ++++.++..||-
T Consensus 186 ~~a~~i~~i~~~e~~~l~~~g~~~~k-----~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~ 247 (248)
T cd02115 186 PDAKLLSELTYEEAAELAYAGAMVLK-----PKAADPAARAGIPVRIANTENPGALALFTPDGGGTL 247 (248)
T ss_pred CcCeECCcCCHHHHHHHHHcCCCccC-----HHHHHHHHHcCCcEEEEeCCCcccccccCCCCCCCC
Confidence 99999999999999999999986654 4567778888899999998664 567778888874
No 33
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.97 E-value=1.9e-32 Score=258.25 Aligned_cols=233 Identities=31% Similarity=0.369 Sum_probs=174.9
Q ss_pred ceEEEEeCccccCCH--HHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASA--ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~--e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|+.|+||||+++.+. + ++++++.|.... ...++||||++|+.+|.+++....... +.. ..+|..
T Consensus 1 k~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~-------~~~-----~~r~~~ 67 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPK-------FVD-----GSRVTD 67 (242)
T ss_dssp SEEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTS-------EET-----HHCHBH
T ss_pred CeEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcc-------cch-----hhhhhh
Confidence 578999999999998 7 999999987532 346679999999999999876322110 000 011111
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
....+... .....+|.+ +...|.++++|+.+++.++..++.+.|+.+...++..
T Consensus 68 ~~~~~~~~----~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 121 (242)
T PF00696_consen 68 IETGLIIT----MAAAAELNR------------DALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDARE---------- 121 (242)
T ss_dssp HHHHHHHH----HHHHHHHHH------------HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSE----------
T ss_pred hhhhHHHH----HHHhhcccc------------chhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhh----------
Confidence 11111000 001111111 3678889999999999999999999888887765441
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCC
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDP 317 (387)
.+.+.+++. ++++.|||++||.+.+ .+|++++++|++||++|+.||.+|+|++++|||||||||++||
T Consensus 122 ------~~~~~i~~~-----l~~~~ipVv~g~~~~~-~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP 189 (242)
T PF00696_consen 122 ------VDKEAIREL-----LEQGIIPVVSGFAGID-DDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADP 189 (242)
T ss_dssp ------EHHHHHHHH-----HHTTSEEEEESEEEEE-TTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSST
T ss_pred ------hHHHHHHHH-----HHCCCEEEEeCCcccC-CCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCC
Confidence 122334433 3458999999999888 5999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHH------HcCCcccccccccchhHHHHHHhcceEEEee
Q 016545 318 NIHPHAKPVPYLTFDEAAELA------YFGAQVNISLIVNDDEAEQCVRALHETFFES 369 (387)
Q Consensus 318 r~v~~Ak~I~~Lsy~EA~eLa------~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~ 369 (387)
+.+|++++|++|+|+|+.+|+ ++|+++++ +.....+.+..++++|.|
T Consensus 190 ~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~-----~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 190 RIVPDARLIPELSYDEAEELASKSGDVTGGMKPKH-----PAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp TTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHH-----HHHHHHHHHTTSEEEEEE
T ss_pred CCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHcCCCcEEEeC
Confidence 999999999999999999999 88888876 344566777799999875
No 34
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.97 E-value=1.2e-29 Score=245.43 Aligned_cols=236 Identities=20% Similarity=0.259 Sum_probs=175.8
Q ss_pred CCceEEEEeCccccC------CHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 79 KQLTCVMKFGGSSLA------SAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~------s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
.|+++|+||||||+. +.+.++++++.|... .+.++|+|+||+++.++.++....
T Consensus 8 ~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~------------------ 69 (266)
T PRK12314 8 NAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK------------------ 69 (266)
T ss_pred hCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecccc------------------
Confidence 367899999999998 789999999999753 234667778998888876653210
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
.+ .+...++.+++.||.++..++..+|+++|+++ +++ +
T Consensus 70 -------------~~-----------------------~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-l 107 (266)
T PRK12314 70 -------------RP-----------------------TSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-L 107 (266)
T ss_pred -------------CC-----------------------CCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-E
Confidence 00 01134578899999999999999999999975 344 7
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC----CCcchhHHHHHHHHcCCceEEEe
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG----RGGSDLTATTIGKALGLQEIQVW 306 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg----RGGSD~tAa~LA~aL~A~~v~i~ 306 (387)
+|.++|.+.+... +..+.+ ..+++.+.|||+.+ ++.+++.+ +|++|++|++||.+|+|+.++||
T Consensus 108 lT~~~~~~~~~~~----~~~~~l-~~ll~~g~IPVv~~-------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liil 175 (266)
T PRK12314 108 LTRDDFDSPKSRA----NVKNTF-ESLLELGILPIVNE-------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIIL 175 (266)
T ss_pred EecccccchHHHH----HHHHHH-HHHHHCCCEEEEcC-------CCCeeeccccceecchHHHHHHHHHHhCCCEEEEE
Confidence 8888887655422 223333 33457789999963 23345555 89999999999999999999999
Q ss_pred ecCCcccccCCCCCCCCccccccCH--HHHHHHHHc-CCccccccccc-chhHHHHHHhcceEEEeeCCcc---cccccc
Q 016545 307 KDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAYF-GAQVNISLIVN-DDEAEQCVRALHETFFESDLAN---LDCVCG 379 (387)
Q Consensus 307 TDVdGV~taDPr~v~~Ak~I~~Lsy--~EA~eLa~~-GakVl~~~~v~-~~~~~~~~ra~i~~~i~~~~~~---~~~~~g 379 (387)
|||||||++||+.+|+|++|+.+++ +|..+++.. +......+|+. ...+..+.+..++++|.++..| .+++.|
T Consensus 176 TDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g 255 (266)
T PRK12314 176 SDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEG 255 (266)
T ss_pred eCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcC
Confidence 9999999999999999999999997 666666533 22222333432 2345566777899999998766 778889
Q ss_pred CCCCccC
Q 016545 380 SENNSSL 386 (387)
Q Consensus 380 ~~~g~~~ 386 (387)
+.+||.+
T Consensus 256 ~~~GT~i 262 (266)
T PRK12314 256 ESIGTLF 262 (266)
T ss_pred CCCceEE
Confidence 8899864
No 35
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.97 E-value=7.9e-30 Score=244.25 Aligned_cols=229 Identities=20% Similarity=0.305 Sum_probs=173.8
Q ss_pred EEEEeCccccCCHH------HHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHH
Q 016545 83 CVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (387)
Q Consensus 83 ~V~KFGGSSv~s~e------~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (387)
+|+|||||++.+.+ .++++++.|.... +.+.|+|+||+++.+...+.
T Consensus 2 iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~------------------------- 56 (251)
T cd04242 2 IVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLG------------------------- 56 (251)
T ss_pred EEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhc-------------------------
Confidence 69999999999865 8999999987542 34567777887766521110
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 155 h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
... +......++.+++.||..+..+++.+|++.|+++..+ ++|++
T Consensus 57 ---------~~~--------------------~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~q~------l~t~~ 101 (251)
T cd04242 57 ---------LEK--------------------RPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVAQI------LLTRD 101 (251)
T ss_pred ---------cCc--------------------CCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEE------EEehh
Confidence 000 0001134467899999999999999999999997543 67777
Q ss_pred CCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceee--eCCCcchhHHHHHHHHcCCceEEEeecCCcc
Q 016545 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (387)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~tt--LgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV 312 (387)
+|.++... ....+.+ ..+++.+.|||+.+ ++.+++ ++||++|++|+.||.+|+|+.++||||||||
T Consensus 102 ~~~~~~~~----~~~~~~i-~~ll~~g~iPVv~~-------~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGv 169 (251)
T cd04242 102 DFEDRKRY----LNARNTL-ETLLELGVIPIINE-------NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGL 169 (251)
T ss_pred HhcchHHH----HHHHHHH-HHHHHCCCEEEEcC-------CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEE
Confidence 77654321 1222222 34457789999963 233444 8999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccC--HHHHHHHH-----HcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCC
Q 016545 313 LTCDPNIHPHAKPVPYLT--FDEAAELA-----YFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSEN 382 (387)
Q Consensus 313 ~taDPr~v~~Ak~I~~Ls--y~EA~eLa-----~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~ 382 (387)
|++||+.+|++++|++++ ++|+.+++ .+|...|+|++ ..+..+.+..++++|.++..| .+++.|+..
T Consensus 170 y~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl---~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~ 246 (251)
T cd04242 170 YDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKL---KAARIATEAGIPVVIANGRKPDVLLDILAGEAV 246 (251)
T ss_pred EeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHH---HHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCC
Confidence 999999999999999999 99999996 66777777665 456667788899999998665 788889999
Q ss_pred CccC
Q 016545 383 NSSL 386 (387)
Q Consensus 383 g~~~ 386 (387)
||.+
T Consensus 247 GT~i 250 (251)
T cd04242 247 GTLF 250 (251)
T ss_pred CeEe
Confidence 9864
No 36
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=233.03 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=161.1
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 81 ~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
++.|+|||||++. +.+.++++++.|.... +.++++|+| .|.....+.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~g-GG~~a~~~~----------------------- 56 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVG-GGNIFRGYI----------------------- 56 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC-CCHHHHHHH-----------------------
Confidence 4689999999997 6789999999998643 234555555 342211110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
.. .++. +....|++.++++++|+.+++.+|+++|+++..+++.+.+.+
T Consensus 57 -----~~--~~~~-------------------------~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~ 104 (231)
T PRK00358 57 -----GA--AAGM-------------------------DRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQV 104 (231)
T ss_pred -----Hh--hcCC-------------------------ChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccc
Confidence 00 0111 113457787889999999999999999999987776554333
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
+. .+ ..+. +. .+++.+.|||++||.+.. . +.+|++|+.+|.+|+|+++++||||||
T Consensus 105 ~~-~~--------~~~~----~~-~~l~~g~vPVv~g~~~~~---~-------~ssD~~A~~lA~~l~A~~li~~tdVdG 160 (231)
T PRK00358 105 AE-PY--------IRRR----AI-RHLEKGRVVIFAAGTGNP---F-------FTTDTAAALRAEEIGADVLLKATNVDG 160 (231)
T ss_pred cC-cc--------cHHH----HH-HHHHCCCEEEEECCCCCC---C-------CCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence 21 11 1122 22 234678899999876532 1 128999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccCC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSLV 387 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~~ 387 (387)
||++||+.+|+|++|++|+|+|+.++ |+++++ ...++.+.++.++++|.+..+| .+++.|+.+||.++
T Consensus 161 Vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d-----~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 161 VYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMD-----ATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred eEcCCCCCCCCCEEeeEecHHHHHHc---CCcchh-----HHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 99999999999999999999998777 888764 2335667889999999998765 78888999999754
No 37
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.96 E-value=2.3e-28 Score=234.05 Aligned_cols=220 Identities=20% Similarity=0.207 Sum_probs=164.8
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 80 QLTCVMKFGGSSLAS-------AERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s-------~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
.+.+|+||||+++.+ .+.++++++.|+.. .+.+++||||| | |.+...
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg-G---n~~rg~-------------------- 59 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-G---NIFRGH-------------------- 59 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC-c---HHHHHH--------------------
Confidence 457899999999987 78999999999853 23467788887 3 444310
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
.++.++.+ ....|++.++||+||+.++..+|++. ++.+.++
T Consensus 60 -------~a~~~~~~-------------------------~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~i 100 (247)
T PRK14557 60 -------LAEEWGID-------------------------RVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVRV 100 (247)
T ss_pred -------HHHhcCCC-------------------------hHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCceeE
Confidence 11122222 24569999999999999999999874 3445557
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEee-cC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DV 309 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~T-DV 309 (387)
+++..+... ..... ..++.+. ++++.|||++||+|.. .++ ||++|+++|.+++|+.+++|| ||
T Consensus 101 ~t~~~~~~~-~~~~~----~~~~~~~-l~~g~VvV~~G~~g~~----~~s------tD~lAallA~~l~Ad~li~~ttdV 164 (247)
T PRK14557 101 MTSIPFNAV-AEPYI----RLRAVHH-LDNGYIVIFGGGNGQP----FVT------TDYPSVQRAIEMNSDAILVAKQGV 164 (247)
T ss_pred Eeccccccc-cchhh----HHHHHHH-HhCCCEEEEECCcCCC----ccC------hHHHHHHHHHHhCCCEEEEecCCc
Confidence 777666432 11111 1223322 3667899999998863 244 999999999999999999995 99
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|||||+||+++|+|++|++++|+|+. +.+.++++ +.+++.+.++.++++|.++.+| .+++.|+.+||..
T Consensus 165 dGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~-----~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i 236 (247)
T PRK14557 165 DGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMD-----QAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 236 (247)
T ss_pred CEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHH-----HHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEE
Confidence 99999999999999999999999884 56666664 3456678999999999999776 7888999999853
No 38
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.96 E-value=3.8e-28 Score=229.49 Aligned_cols=216 Identities=22% Similarity=0.295 Sum_probs=161.6
Q ss_pred EEEEeCccccCC------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHH
Q 016545 83 CVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (387)
Q Consensus 83 ~V~KFGGSSv~s------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (387)
+|+|||||++.+ .+.++++++.|.+.. +.++++|+|| |...+.....
T Consensus 2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~gg-G~~a~~~~~~------------------------ 56 (229)
T cd04239 2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIAA------------------------ 56 (229)
T ss_pred EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-ChHHhhHHHh------------------------
Confidence 699999999988 799999999988542 3355566665 4433221100
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 155 h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
.+. .++...|++.+.||++|+.||+.+|+++|+++.++++.++..++.
T Consensus 57 ------~~~-------------------------~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~- 104 (229)
T cd04239 57 ------ARG-------------------------MPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE- 104 (229)
T ss_pred ------hcC-------------------------CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc-
Confidence 011 112345778889999999999999999999999999887532211
Q ss_pred CCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
. .+.+.+. .+++.+.|||++||.|... + .||++|+++|.+|+|+++++||||||||+
T Consensus 105 ~--------~~~~~l~-----~~l~~g~ipVi~g~~g~~~--~--------~sD~~A~~lA~~l~a~~li~~tdVdGvy~ 161 (229)
T cd04239 105 P--------YIRRRAI-----RHLEKGRIVIFGGGTGNPG--F--------TTDTAAALRAEEIGADVLLKATNVDGVYD 161 (229)
T ss_pred c--------ccHHHHH-----HHHhCCCEEEEeCccCCCC--C--------CcHHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 1 1222222 2246789999999986531 1 29999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
+||+.+|+|++|++|+|+|+.+++. ++++ +..++.+.+..++++|.++..+ .+++.|+..||.+
T Consensus 162 ~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~-----~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 228 (229)
T cd04239 162 ADPKKNPDAKKYDRISYDELLKKGL---KVMD-----ATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLI 228 (229)
T ss_pred CCCCCCCCCeEEeEEcHHHHHHHhc---CCcc-----HHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEe
Confidence 9999999999999999999999875 3333 2334557888999999998665 7888899889854
No 39
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.96 E-value=1.5e-27 Score=225.79 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=129.9
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCc
Q 016545 191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFL 270 (387)
Q Consensus 191 ~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfi 270 (387)
+...|.+..+||+||+.+++.+|.++|++++++++ +.... ++...+.+.+. .+++.+.|||++||.
T Consensus 62 ~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~----~~~~~-----~~~~~~~~~i~-----~ll~~g~vpV~~G~~ 127 (231)
T PRK14558 62 PTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ----IVNLP-----SVEPINYDDIE-----LYFRAGYIVIFAGGT 127 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecc----ccccc-----hhhhhhHHHHH-----HHHHCCCEEEEECCC
Confidence 35667788999999999999999999999999875 22211 12122222332 224568899999987
Q ss_pred cccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccc
Q 016545 271 GKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIV 350 (387)
Q Consensus 271 g~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v 350 (387)
+.. ..+ +|++|+++|.+|+|+.+++||||||||++||+++|+|++|++++|+|+.++ |++++|
T Consensus 128 ~~~----~~~------~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d---- 190 (231)
T PRK14558 128 SNP----FFT------TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD---- 190 (231)
T ss_pred CCC----CCC------cHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---Cccccc----
Confidence 632 122 799999999999999999999999999999999999999999999999886 777775
Q ss_pred cchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 351 NDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 351 ~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
+..++.+.+..++++|.++.++ .+++.|+++||-.
T Consensus 191 -~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i 228 (231)
T PRK14558 191 -TEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228 (231)
T ss_pred -HHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEe
Confidence 3445667899999999998655 7889999999854
No 40
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.95 E-value=1.3e-27 Score=226.37 Aligned_cols=218 Identities=22% Similarity=0.259 Sum_probs=162.5
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 81 ~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
++.|+|||||++. +.+.++++++.|+... +.++|||+|| |..... .. +
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~~~~-~~----~----------------- 57 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNIFRG-AS----A----------------- 57 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Cccccc-ch----h-----------------
Confidence 4689999999996 7899999999998543 3466778877 422100 00 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
..++.. ....|++.++||++|+.+++.+|++.|+++.++++.+...+
T Consensus 58 --------~~~~~~-------------------------~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~ 104 (231)
T cd04254 58 --------AEAGMD-------------------------RATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGV 104 (231)
T ss_pred --------hhcCCC-------------------------chhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhh
Confidence 001111 01246677889999999999999999999999999875322
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
.. ..+.+.+.+ +++.+.|||++||.|.. ..+ +|++|+.+|.+|+|+++++||||||
T Consensus 105 ~~---------~~~~~~l~~-----~l~~g~ipV~~g~~G~~----~~~------~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 105 AE---------PYIRRRAIR-----HLEKGRVVIFAGGTGNP----FFT------TDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred hc---------ccCHHHHHH-----HHHCCCEEEEECCcCCC----CCC------cHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 11 112222332 24668899999988732 122 8999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
||++||+.+|+++++++++|+|+.+ +|+++++ ...++.+.+..++++|.++.+| .+++.|+.+||..
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d-----~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i 230 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMD-----ATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLI 230 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHh---cchhhhH-----HHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEe
Confidence 9999999999999999999999976 4776664 2335567778999999998765 7889999999864
No 41
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.95 E-value=7.7e-27 Score=219.56 Aligned_cols=212 Identities=20% Similarity=0.202 Sum_probs=158.6
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 83 ~V~KFGGSSv~s---~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
+|+|||||++.+ .+.+++++++|+...+.+++|+|+++|..++.+.+.++
T Consensus 2 iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~~--------------------------- 54 (221)
T cd04253 2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVAR--------------------------- 54 (221)
T ss_pred EEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHH---------------------------
Confidence 689999999988 69999999999864333456678888887776654321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCc
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (387)
+++.+ ....|.+...++++|+.++..+|. .|+++++++
T Consensus 55 -~~~~~-------------------------~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~--------------- 92 (221)
T cd04253 55 -KLGAS-------------------------EAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS--------------- 92 (221)
T ss_pred -HcCCC-------------------------HHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC---------------
Confidence 12211 134577888899999999998886 787765542
Q ss_pred eecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
.+.+.+. ++.+.|||++||++. .+ +|++|+++|.+|+|+.+++||||||||++||+.
T Consensus 93 ------~~~~~~~-----l~~g~vpv~~G~~~~------~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~ 149 (221)
T cd04253 93 ------YEEALEA-----MFTGKIVVMGGTEPG------QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRK 149 (221)
T ss_pred ------HHHHHHH-----HHcCCeEEEECCCCC------Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCC
Confidence 1222222 355789999998752 23 799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccccccchh-HHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDE-AEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~-~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
+|+|++|++++++|+.++++.+.......++.+.. ++.+.+..++++|.++.+| .+++.|+.+||.+
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I 220 (221)
T cd04253 150 DPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220 (221)
T ss_pred CCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence 99999999999999999987621000111223444 4556888899999998766 7888999999865
No 42
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.95 E-value=6.5e-27 Score=221.91 Aligned_cols=218 Identities=22% Similarity=0.256 Sum_probs=160.3
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 81 ~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
+|+|+|||||++. +.+.++++++.|.... +.+.|+|+|| | +.+...
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~-G---s~~~~~--------------------- 56 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG-G---NIFRGV--------------------- 56 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-C---HHHHHH---------------------
Confidence 4789999999998 5788999999987532 2345555555 3 222211
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
. ++.++.+ ....|++.++++++|+.+|+.+|++.|+++.++++++++ .
T Consensus 57 ----~--a~~~~~~-------------------------~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~ 104 (233)
T TIGR02075 57 ----S--AKELGID-------------------------RVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-Q 104 (233)
T ss_pred ----H--HHhcCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-C
Confidence 0 1112211 112467889999999999999999999999999988753 1
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeec-CC
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TD-Vd 310 (387)
+...| ..+.+++ +++.+.|||++||.|... .+ +|++|++||..|+|+.+++||| ||
T Consensus 105 ~~~~~--------~~~~i~~-----ll~~g~VpV~~g~~g~~~----~s------~D~~a~~lA~~l~a~~li~~td~Vd 161 (233)
T TIGR02075 105 ICESY--------IRRKAIK-----HLEKGKVVIFSGGTGNPF----FT------TDTAAALRAIEINADVILKGTNGVD 161 (233)
T ss_pred Ccccc--------CHHHHHH-----HHHCCCEEEEECCCCCCC----CC------chHHHHHHHHHcCCCEEEEeecccC
Confidence 11111 1122222 246688999999876531 22 8999999999999999999999 99
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|||++||+++|++++|++++|+|+.++ |+++++ ...++.+.++.++++|.++.+| .+++.|+.+||.+
T Consensus 162 Gvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d-----~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i 232 (233)
T TIGR02075 162 GVYTADPKKNKDAKKYETITYNEALKK---NLKVMD-----LTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLV 232 (233)
T ss_pred eEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHH-----HHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEe
Confidence 999999999999999999999998764 666654 2234556777899999998765 6888899999864
No 43
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=2.9e-26 Score=219.52 Aligned_cols=239 Identities=17% Similarity=0.253 Sum_probs=175.5
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 016545 83 CVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (387)
Q Consensus 83 ~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~ 160 (387)
.|+||||+++.+.+.++++++.|... ....++|+||++|+.+|.|++....
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~--------------------------- 53 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNF--------------------------- 53 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCC---------------------------
Confidence 38999999999988899999988753 2346789999999999999864211
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHh-hhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC-
Q 016545 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN- 238 (387)
Q Consensus 161 ~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Il-s~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~- 238 (387)
.. ++.++++. .++...+.+. .+++++|..++++++ ++|++++++++.+.+++++++++.
T Consensus 54 ----~~-----------~~~~g~rv---t~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~ 114 (252)
T cd04249 54 ----PS-----------EKKNGLRV---TPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPE 114 (252)
T ss_pred ----CC-----------EEECCEec---CCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCC
Confidence 00 00011111 2345556654 457899999998765 899999999999998998865432
Q ss_pred ----ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 239 ----ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 239 ----a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
+++.+.+.+.+++. ++.+.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||||+
T Consensus 115 ~~~~G~v~~i~~~~l~~l-----l~~g~ipVi~~-~g~~-~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~ 183 (252)
T cd04249 115 LGAVGKATANDPSLLNDL-----LKAGFLPIISS-IGAD-DQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLD 183 (252)
T ss_pred CCcccceEEEcHHHHHHH-----HHCCCEEEECC-CEEC-CCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCC
Confidence 34544455444432 36688999996 6887 589999999 999999999999999 679999999999
Q ss_pred cCCCCCCCCccccccCHHHHHHHHHcCCcccccccc-cchhHHH-HHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIV-NDDEAEQ-CVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v-~~~~~~~-~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
.|| ++|++++++|+.++...| .+.++|. ....+.. +.+..+++.|.++..+ .++++|+..||.+
T Consensus 184 ~~~------~~i~~i~~~e~~~~~~~g--~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 184 ADK------QLISELNAKQAAELIEQG--VITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred CCC------cCccccCHHHHHHHHhcC--CCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 876 579999999999999876 2333331 1122222 3444688899887655 6778899889853
No 44
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.94 E-value=2.8e-26 Score=215.56 Aligned_cols=211 Identities=21% Similarity=0.178 Sum_probs=155.9
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 83 ~V~KFGGSSv~s---~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
.|+|||||++.+ .+.++++++.|++..+.+.+|+|+++|..++.+++.+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~---------------------------- 52 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVA---------------------------- 52 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHH----------------------------
Confidence 489999999987 6999999999986433245666666666655544322
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCc
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (387)
++++. +....|++...++++|+.++...|+..+++++..+..+
T Consensus 53 ~~~~~-------------------------~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~~~------------ 95 (221)
T TIGR02076 53 RELGA-------------------------SETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENFEE------------ 95 (221)
T ss_pred HHcCC-------------------------CHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCHHH------------
Confidence 12221 22355778888999999999999988888776542211
Q ss_pred eecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCC
Q 016545 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (387)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~ 319 (387)
..+. +..+.+||++||++ | .+ +|++|+++|.+|+|+.+.+||||||||++||+.
T Consensus 96 ---------~~~~-----l~~g~ipv~~G~~~-----~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~ 149 (221)
T TIGR02076 96 ---------ALEA-----MSLGKIVVMGGTHP-----G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKK 149 (221)
T ss_pred ---------HHHH-----HHcCCEEEEcCCCC-----C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCC
Confidence 1111 24568999999863 2 22 799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCcccccc--cccchh-HHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 320 HPHAKPVPYLTFDEAAELAYFGAQVNISL--IVNDDE-AEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 320 v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~--~v~~~~-~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
+|+|++|++++++|+.+++..+ .+.++ +..+.. ++.+.+..++++|.++.+| .+++.|+.+||.+
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~--~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 150 DPDAKKFDKLTPEELVEIVGSS--SVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred CCCCeEeeEECHHHHHHHhcCC--CccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 9999999999999999998732 11122 223444 4456788899999998765 6678899899875
No 45
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.94 E-value=1.8e-26 Score=224.18 Aligned_cols=241 Identities=17% Similarity=0.253 Sum_probs=170.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
.+.|+|||||++.+.+.+.++++.|... .+.++|+|++|++.+++.+.+...
T Consensus 15 ~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~-------------------------- 68 (279)
T cd04250 15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGI-------------------------- 68 (279)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCC--------------------------
Confidence 5899999999999988888888877632 234667777776655555543211
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhH---HHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS---RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~---~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
.. ++.++++. .++.+ .+.+++ | ++|..| ++.|++.|++++++++.+.++++++.
T Consensus 69 ------~~-----------~~~~g~r~---t~~~~~~~~~~~~~-g-~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~ 125 (279)
T cd04250 69 ------ES-----------EFVNGLRV---TDEETMEIVEMVLV-G-KVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKK 125 (279)
T ss_pred ------CC-----------EeECCeec---CCHHHHHHHHHHHc-C-chHHHH-HHHHHHcCCCcceeecCCCCEEEEEE
Confidence 10 00011111 12222 233444 7 689997 67899999999999999998999876
Q ss_pred CCC------------ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceE
Q 016545 236 FTN------------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEI 303 (387)
Q Consensus 236 ~~~------------a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v 303 (387)
++. +++...+...+++ +++.+.|||++| ++.+ ..|++++++ +|.+|+.+|.+|+|+++
T Consensus 126 ~~~~~~~~~~~~~~~g~i~~i~~~~i~~-----ll~~g~IPVi~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~A~~l 195 (279)
T cd04250 126 KDATVIEEIIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-VGVG-EDGETYNIN---ADTAAGAIAAALKAEKL 195 (279)
T ss_pred CcccccCCCcccCcccceEEEcHHHHHH-----HHHCCCeEEEcC-CccC-CCCcEEEeC---HHHHHHHHHHHhCCCEE
Confidence 652 3344444444443 346688999999 6877 478888898 99999999999999999
Q ss_pred EEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCccccccc-ccchhHHHHHHh-cceEEEeeCCcc----cccc
Q 016545 304 QVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLI-VNDDEAEQCVRA-LHETFFESDLAN----LDCV 377 (387)
Q Consensus 304 ~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~-v~~~~~~~~~ra-~i~~~i~~~~~~----~~~~ 377 (387)
++||||||||++||+ ++++|++++++|+.++++.| ....+| .....+..+.+. +.+++|.++..| .++.
T Consensus 196 i~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~--~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~ 270 (279)
T cd04250 196 ILLTDVAGVLDDPND---PGSLISEISLKEAEELIADG--IISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIF 270 (279)
T ss_pred EEEECCcccccCCCC---CccccccCCHHHHHHHHHcC--CCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHh
Confidence 999999999999984 48999999999999998765 222333 112344444444 456899888665 5667
Q ss_pred ccCCCCcc
Q 016545 378 CGSENNSS 385 (387)
Q Consensus 378 ~g~~~g~~ 385 (387)
+++..||-
T Consensus 271 ~~~~~GT~ 278 (279)
T cd04250 271 TDEGIGTM 278 (279)
T ss_pred cCCCCccC
Confidence 78888875
No 46
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.94 E-value=5.6e-26 Score=214.71 Aligned_cols=213 Identities=18% Similarity=0.250 Sum_probs=153.5
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (387)
Q Consensus 82 ~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~ 160 (387)
+.|+||||+++.+. +.++++.|.... ...++|+||++++.+|.+++....
T Consensus 1 ~~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~--------------------------- 51 (231)
T TIGR00761 1 TIVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGI--------------------------- 51 (231)
T ss_pred CEEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCC---------------------------
Confidence 57999999999886 888888887432 233467889999999988764220
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC--
Q 016545 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-- 237 (387)
Q Consensus 161 ~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~-- 237 (387)
.. ++.++++ ..++...+.+ .++++++|..+++ .|+++|++++++++.+.++++.+.+.
T Consensus 52 ----~~-----------~~~~g~r---~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~ 112 (231)
T TIGR00761 52 ----PP-----------EFKNGLR---VTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKE 112 (231)
T ss_pred ----CC-----------EecCCCc---cCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCc
Confidence 00 0000111 1122333332 3446688988886 79999999999999998888876443
Q ss_pred ---C-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccc
Q 016545 238 ---N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (387)
Q Consensus 238 ---~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ 313 (387)
. +++...+.+.+++. ++.+.|||++| +|.+ .+|++++++ +|++|+.||.+|+|++++|||||||||
T Consensus 113 ~~~~~g~i~~i~~~~i~~~-----l~~g~IPVi~~-~~~~-~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~ 182 (231)
T TIGR00761 113 DLGYVGEIKKVNKALLEAL-----LKAGYIPVISS-LALT-AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGIL 182 (231)
T ss_pred cCCcccceEEEcHHHHHHH-----HHCCCeEEECC-CccC-CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCee
Confidence 1 34444445555443 35688999999 5777 589999998 999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHh
Q 016545 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRA 361 (387)
Q Consensus 314 taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra 361 (387)
++||+ ++|++|+++|+.+|++.| .+..+| -++.+.+.++
T Consensus 183 ~~d~~-----~~i~~i~~~e~~~l~~~~--~~tggm--~~Kl~~a~~a 221 (231)
T TIGR00761 183 NGDGQ-----SLISEIPLEEIEQLIEQG--IITGGM--IPKVNAALEA 221 (231)
T ss_pred cCCCC-----eeccccCHHHHHHHHHcC--CCCCch--HHHHHHHHHH
Confidence 99884 689999999999999876 233444 3455544433
No 47
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.94 E-value=6.2e-26 Score=220.82 Aligned_cols=241 Identities=20% Similarity=0.286 Sum_probs=172.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+.+.|+||||+++.+.+.+..+++.|.... ....+||||++|+.++.+++...
T Consensus 23 ~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g-------------------------- 76 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLG-------------------------- 76 (283)
T ss_pred CCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCC--------------------------
Confidence 457999999999999988888888776432 22346899999999998876311
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhH---HHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS---RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~---~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
... ++..+++. .++.. .+..++ | ++|..++ ++|+++|++++++++.+.+++++++
T Consensus 77 -----~~~-----------~~~~g~~~---t~~~~l~~~~~a~~-G-~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~ 134 (283)
T PRK00942 77 -----IES-----------EFVNGLRV---TDAETMEVVEMVLA-G-KVNKELV-SLINKHGGKAVGLSGKDGGLITAKK 134 (283)
T ss_pred -----CCc-----------EeeCCEec---CCHHHHHHHHHHHc-C-chHHHHH-HHHHhCCCCccceeeccCCEEEEEE
Confidence 000 00011111 12222 233444 7 7788877 7899999999999999999999865
Q ss_pred C------CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeec
Q 016545 236 F------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (387)
Q Consensus 236 ~------~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TD 308 (387)
+ +. +++...+.+.+++. ++.+.|||+++ ++.+ .+|++++++ +|++|+.||.+|+|+++++|||
T Consensus 135 ~~~~~~~~~~g~i~~i~~~~l~~l-----l~~g~vpVv~~-~~~~-~~g~~~~l~---~D~~A~~lA~~l~A~~li~~td 204 (283)
T PRK00942 135 LEEDEDLGFVGEVTPVNPALLEAL-----LEAGYIPVISP-IGVG-EDGETYNIN---ADTAAGAIAAALGAEKLILLTD 204 (283)
T ss_pred CCCCCCCccccceEEECHHHHHHH-----HHCCCEEEEcC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEEC
Confidence 5 21 34444444444432 36688999996 7887 589999998 9999999999999999999999
Q ss_pred CCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccc-cchhHHHHHHh-cceEEEeeCCcc----ccccccCCC
Q 016545 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIV-NDDEAEQCVRA-LHETFFESDLAN----LDCVCGSEN 382 (387)
Q Consensus 309 VdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v-~~~~~~~~~ra-~i~~~i~~~~~~----~~~~~g~~~ 382 (387)
|||||++ ++++|++|+++|+.+++..| .....|. ....+..+.+. +.++.|.++..+ .+++.|+.+
T Consensus 205 v~Gv~~~------~~~~i~~i~~~e~~~~~~~~--~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~ 276 (283)
T PRK00942 205 VPGVLDD------KGQLISELTASEAEELIEDG--VITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGI 276 (283)
T ss_pred CcccccC------CCcccccCCHHHHHHHHHcC--CCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCc
Confidence 9999986 58899999999999999765 2323331 12333334444 457899887654 567788889
Q ss_pred CccC
Q 016545 383 NSSL 386 (387)
Q Consensus 383 g~~~ 386 (387)
||.+
T Consensus 277 GT~i 280 (283)
T PRK00942 277 GTMI 280 (283)
T ss_pred ceEE
Confidence 9853
No 48
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.93 E-value=3.1e-25 Score=223.35 Aligned_cols=231 Identities=19% Similarity=0.269 Sum_probs=168.7
Q ss_pred CCceEEEEeCccccCC------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCc-hHHHHHhHHHhhcCCCCcchhHHHH
Q 016545 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTT-NKLLLAGEKAVSCGVTNISCIDELS 149 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvT-d~Ll~~~~~a~~~~~~~~~~~~~l~ 149 (387)
.+.++|+||||+++.+ .+.+.++++.|.... +.++|+|+|+.-... +.|
T Consensus 4 ~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l---------------------- 61 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKL---------------------- 61 (368)
T ss_pred CCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCcccc----------------------
Confidence 4578999999999985 588999999887542 345666666541111 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEeccccee
Q 016545 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (387)
Q Consensus 150 ~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ 229 (387)
+.. .......++.+.+.|+.+...++..+|+++|+++..+
T Consensus 62 -------------~~~---------------------~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aqv------ 101 (368)
T PRK13402 62 -------------GFI---------------------DRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQL------ 101 (368)
T ss_pred -------------CCC---------------------CCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEE------
Confidence 100 0001124567788999999999999999999998654
Q ss_pred eEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceee--eCCCcchhHHHHHHHHcCCceEEEee
Q 016545 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~tt--LgRGGSD~tAa~LA~aL~A~~v~i~T 307 (387)
++|.+++.+.+ .+.++++.+. .+++.+.|||+.. +..+++ +++|++|++|+++|.+|+|+.+++||
T Consensus 102 LlT~~d~~~~~----~y~n~~~~l~-~LL~~g~IPIine-------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilT 169 (368)
T PRK13402 102 LLTHGDLRDRE----RYINIRNTIN-VLLERGILPIINE-------NDAVTTDRLKVGDNDNLSAMVAALADADTLIILS 169 (368)
T ss_pred EEecchhhhHH----HHHHHHHHHH-HHHHCCcEEEEeC-------CCcEeecccccCChHHHHHHHHHHhCCCEEEEEe
Confidence 56666653322 1334454443 3457789999963 112344 88999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCccccccCH--HHHHHHH-----HcCCcccccccccchhHHHHHHhcceEEEeeCCcc---cccc
Q 016545 308 DVDGVLTCDPNIHPHAKPVPYLTF--DEAAELA-----YFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCV 377 (387)
Q Consensus 308 DVdGV~taDPr~v~~Ak~I~~Lsy--~EA~eLa-----~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~ 377 (387)
||||||++||+.+|+|++|+++++ +|+.+++ .+|...|+|++ .++..+.++.++++|.++..+ .+++
T Consensus 170 DVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl---~Aa~~a~~~gi~v~I~~g~~~~~l~~~l 246 (368)
T PRK13402 170 DIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKI---QAAKIAMSHGIETFIGNGFTADIFNQLL 246 (368)
T ss_pred cCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHH---HHHHHHHHcCCcEEEEcCCCchHHHHHh
Confidence 999999999999999999999998 7887776 34555565554 556667888999999998765 6788
Q ss_pred ccCCCCccC
Q 016545 378 CGSENNSSL 386 (387)
Q Consensus 378 ~g~~~g~~~ 386 (387)
.|+.+||.+
T Consensus 247 ~g~~~GT~i 255 (368)
T PRK13402 247 KGQNPGTYF 255 (368)
T ss_pred cCCCCceEE
Confidence 899899864
No 49
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.93 E-value=4e-25 Score=223.17 Aligned_cols=235 Identities=21% Similarity=0.305 Sum_probs=165.9
Q ss_pred CCceEEEEeCccccCC------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
.|+++|+|||||++.+ .+.+.++++.|.... +.++|+|+|++ +. ++..
T Consensus 7 ~~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~-----~g~~----------------- 62 (372)
T PRK05429 7 DARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VA-----AGRE----------------- 62 (372)
T ss_pred hCCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hh-----hhHh-----------------
Confidence 3567999999999986 789999999887543 23455555542 11 1000
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
.++... +......++.+.+.|+.....++..+|++.|+++..+ +
T Consensus 63 ----------~l~l~~--------------------~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi------l 106 (372)
T PRK05429 63 ----------RLGLPE--------------------RPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQI------L 106 (372)
T ss_pred ----------hcCCCC--------------------CCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE------E
Confidence 111111 0001133467788999999999999999999998774 4
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+|.+++.+.. .+-+... +...+++.+.|||+...-... ...+++|++|++|++||.+|+|+.++||||||
T Consensus 107 ~t~~d~~~~~----~~ln~~~-~i~~Ll~~g~IPVi~~nd~v~-----~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVd 176 (372)
T PRK05429 107 LTRDDLEDRE----RYLNARN-TLRTLLELGVVPIINENDTVA-----TDEIKFGDNDTLSALVANLVEADLLILLTDVD 176 (372)
T ss_pred eehhHhhhhh----HhhhHHH-HHHHHHHCCCEEEEcCCCccc-----eecccccChHHHHHHHHHHcCCCEEEEecCCC
Confidence 5655553211 0111122 223345778999996311111 12368899999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCH--HHHHHHHH-----cCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGS 380 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy--~EA~eLa~-----~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~ 380 (387)
|||++||+.+|++++|+++++ +|+.+++. +|...|+|++ .++..+.++.++++|.++..+ .+++.|+
T Consensus 177 GVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl---~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~ 253 (372)
T PRK05429 177 GLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKL---EAARIATRAGIPVVIASGREPDVLLRLLAGE 253 (372)
T ss_pred eeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHH---HHHHHHHHCCCeEEEEcCCCccHHHHHhcCC
Confidence 999999999999999999998 78888863 4555566554 466677888999999998665 7788898
Q ss_pred CCCccC
Q 016545 381 ENNSSL 386 (387)
Q Consensus 381 ~~g~~~ 386 (387)
.+||.+
T Consensus 254 ~~GT~i 259 (372)
T PRK05429 254 AVGTLF 259 (372)
T ss_pred CCCEEE
Confidence 899864
No 50
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=4.9e-25 Score=211.43 Aligned_cols=237 Identities=19% Similarity=0.236 Sum_probs=167.4
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 016545 83 CVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (387)
Q Consensus 83 ~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~ 161 (387)
.|+||||+++.+++.++++++.|.... ...++|+|+++++.+|.+++......+
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~------------------------- 55 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESE------------------------- 55 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCE-------------------------
Confidence 389999999999988899998887422 223466779999999998864321100
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHH---HHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC--
Q 016545 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRD---YLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (387)
Q Consensus 162 L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d---~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~-- 236 (387)
+..++ ...++...+ ..++ | ++|..| .++|+++|++++++++.+.++++++.+
T Consensus 56 -----------------~~~~~---r~t~~~~l~~~~~a~~-g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 112 (256)
T cd04238 56 -----------------FVNGL---RVTDKETMEIVEMVLA-G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEE 112 (256)
T ss_pred -----------------eECCe---ecCCHHHHHHHHHHHc-C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCC
Confidence 00000 111222222 2333 6 889997 678999999999999999989988652
Q ss_pred -----CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 237 -----~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+. +++...+.+.+++. ++.+.|||++| ++.+ ..|++++++ +|++|+.||.+|+|+++++|||||
T Consensus 113 ~~~~~~~~g~i~~i~~~~l~~l-----l~~g~ipVv~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~ 182 (256)
T cd04238 113 KDIDLGFVGEVTEVNPELLETL-----LEAGYIPVIAP-IAVD-EDGETYNVN---ADTAAGAIAAALKAEKLILLTDVP 182 (256)
T ss_pred CCCCcccccceEEECHHHHHHH-----HHCCCEEEECC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 21 34444455444432 36688999998 6877 488999998 999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccc-cchhHHHHHH-hcceEEEeeCCcc---cccccc-CCCCc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIV-NDDEAEQCVR-ALHETFFESDLAN---LDCVCG-SENNS 384 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v-~~~~~~~~~r-a~i~~~i~~~~~~---~~~~~g-~~~g~ 384 (387)
|||++ ++++|++++++|+.+++..+ .+ ...|. ...++..+.+ ...+++|.++..+ .+.+.| +.+||
T Consensus 183 Gv~~~------~~~~i~~i~~~e~~~~~~~~-~~-~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT 254 (256)
T cd04238 183 GVLDD------PGSLISELTPKEAEELIEDG-VI-SGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGT 254 (256)
T ss_pred cccCC------CCCccccCCHHHHHHHHHcC-CC-CCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCC
Confidence 99987 37899999999999998743 22 23331 1233333444 3567999998665 677777 55777
Q ss_pred c
Q 016545 385 S 385 (387)
Q Consensus 385 ~ 385 (387)
.
T Consensus 255 ~ 255 (256)
T cd04238 255 M 255 (256)
T ss_pred C
Confidence 4
No 51
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.92 E-value=2e-24 Score=208.97 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=131.8
Q ss_pred CChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC----------------CCCC-ceecccchHHHH
Q 016545 189 LTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD----------------DFTN-ADILEATYPAVA 250 (387)
Q Consensus 189 ~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~----------------~~~~-a~i~~~~~~~i~ 250 (387)
.+++..+.+ .++| ++|..|++ +|+++|++|+++++.+.++++.+ +++. +++...+.+.++
T Consensus 66 t~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~ 143 (268)
T PRK14058 66 TDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLK 143 (268)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHH
Confidence 345666664 6889 99999986 89999999999999998776532 1221 455555555554
Q ss_pred HHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccC
Q 016545 251 KRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (387)
Q Consensus 251 ~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Ls 330 (387)
.. ++.+.|||++|+ +.+ ..|+.++++ +|++|+.+|.+|+|++++|||||||||++||+ ++++|++|+
T Consensus 144 ~l-----l~~g~iPVi~~~-~~~-~~g~~~~i~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~ 210 (268)
T PRK14058 144 LL-----LKAGYLPVVAPP-ALS-EEGEPLNVD---GDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERIT 210 (268)
T ss_pred HH-----HHCCCEEEEeCc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcC
Confidence 42 366889999996 555 478888887 99999999999999999999999999999993 578999999
Q ss_pred HHHHHHHHHcCCcccccccccchhHHH---HHHhcc-eEEEeeCCcc---ccccccCCCCccC
Q 016545 331 FDEAAELAYFGAQVNISLIVNDDEAEQ---CVRALH-ETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 331 y~EA~eLa~~GakVl~~~~v~~~~~~~---~~ra~i-~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
++|+.++..+. ..+| .++.+. +.++.+ +++|.+...+ .+.+.|+ ||.+
T Consensus 211 ~~e~~~l~~~~----tGgM--~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I 265 (268)
T PRK14058 211 PEEAEELSKAA----GGGM--KKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GTVI 265 (268)
T ss_pred HHHHHHHhhcc----CCcc--HHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEE
Confidence 99999987642 3333 244444 455556 8889888655 5666664 7754
No 52
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.91 E-value=3.3e-24 Score=232.20 Aligned_cols=243 Identities=17% Similarity=0.208 Sum_probs=172.8
Q ss_pred CCceEEEEeCccccCCHH------HHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 79 KQLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s~e------~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
.|+++|+||||||+.+.+ +|++++++|... .+.++|+|+||+.+.++.++...+..
T Consensus 14 ~~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~---------------- 77 (718)
T PLN02418 14 DVKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLV---------------- 77 (718)
T ss_pred hCCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhh----------------
Confidence 367899999999999987 999999999743 34578999999999999888653221
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHH--HHhhhhhHHHHHHHHHHHHHcCCCeEEecccce
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRD--YLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d--~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~ 228 (387)
+++..+ +. .+....| .+.++||.++..+++.+|++.|+++.. +
T Consensus 78 ---------~~~~~~-----------------~~----~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~~q-----i 122 (718)
T PLN02418 78 ---------NSSFAD-----------------LQ----KPQMELDGKACAAVGQSELMALYDTLFSQLDVTASQ-----L 122 (718)
T ss_pred ---------hccccc-----------------CC----CCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCeEEE-----E
Confidence 011000 00 0111224 678999999999999999999996544 3
Q ss_pred eeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC---------CcchhHHHHHHHHcC
Q 016545 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---------GGSDLTATTIGKALG 299 (387)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR---------GGSD~tAa~LA~aL~ 299 (387)
++|+++|.+.+.. .+..+.+. .+++.+.|||+.|. +.+++..+ +++|++|++||.+|+
T Consensus 123 -llT~~~~~~~~~~----~~~~~~l~-~ll~~g~iPVv~~n-------d~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~ 189 (718)
T PLN02418 123 -LVTDSDFRDPDFR----KQLSETVE-SLLDLRVIPIFNEN-------DAVSTRRAPYEDSSGIFWDNDSLAALLALELK 189 (718)
T ss_pred -EecHhHhcchhHh----HhHHHHHH-HHHHCCCEEEEcCC-------CCccccccccccccCeecCcHHHHHHHHHHcC
Confidence 7887888665432 23333343 34577889999652 22333321 159999999999999
Q ss_pred CceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCC--ccccccccc-chhHHHHHHhcceEEEeeCCcc---
Q 016545 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVNISLIVN-DDEAEQCVRALHETFFESDLAN--- 373 (387)
Q Consensus 300 A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~Ga--kVl~~~~v~-~~~~~~~~ra~i~~~i~~~~~~--- 373 (387)
|+.++|||||||||++||+ .|++++|++++..+......+|. .....+|.. -.++..+.++.++++|.++.++
T Consensus 190 Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l 268 (718)
T PLN02418 190 ADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNI 268 (718)
T ss_pred CCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchH
Confidence 9999999999999999998 59999999998766554333332 122344421 1334456777899999998665
Q ss_pred ccccccCCCCccC
Q 016545 374 LDCVCGSENNSSL 386 (387)
Q Consensus 374 ~~~~~g~~~g~~~ 386 (387)
.+++.|+..||.+
T Consensus 269 ~~~l~g~~~GT~i 281 (718)
T PLN02418 269 RKVLRGERVGTLF 281 (718)
T ss_pred HHHhcCCCCceEe
Confidence 7888899999865
No 53
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.91 E-value=5e-23 Score=196.87 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
+++..+. .+|.++|+++.++++.++ +.+. ..++...+.+.+++ +++.+.|||++|+.+.+ .+|++.++
T Consensus 80 ~ln~~~~-~~l~~~g~~a~~l~~~~~-~~~~----~g~~~~~~~~~l~~-----ll~~g~iPVi~~~~~~~-~~~~~~~~ 147 (252)
T cd04241 80 ELNSIVV-DALLEAGVPAVSVPPSSF-FVTE----NGRIVSFDLEVIKE-----LLDRGFVPVLHGDVVLD-EGGGITIL 147 (252)
T ss_pred HHHHHHH-HHHHHCCCCeEEEChHHe-EEec----CCeeeeecHHHHHH-----HHhCCCEEEEcCCeEec-CCCCeEEe
Confidence 6677644 578899999999999986 3332 12343334444433 24678999999988877 47778888
Q ss_pred CCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc-C--Cccccccccc-chhHHHH
Q 016545 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-G--AQVNISLIVN-DDEAEQC 358 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~-G--akVl~~~~v~-~~~~~~~ 358 (387)
+ +|++|+.+|.+|+|+++++||||||||++|| |++++|++++++|+.++... + ......+|.. -..+..+
T Consensus 148 ~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a 221 (252)
T cd04241 148 S---GDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL 221 (252)
T ss_pred C---hHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999 99999999999999998753 1 1122333311 1335556
Q ss_pred HHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 359 VRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 359 ~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
.++.++++|.++.++ .++++|+.+||.+
T Consensus 222 ~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 222 ARRGIEVYIFNGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred HhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence 777899999998765 7888899899864
No 54
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=3.1e-23 Score=194.70 Aligned_cols=219 Identities=21% Similarity=0.252 Sum_probs=166.7
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s-------~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
.+.+|+|+||+.+.. ++.++++++.|++.. .+..|.||-++|++....+..
T Consensus 5 ~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~--------------------- 63 (238)
T COG0528 5 YMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGA--------------------- 63 (238)
T ss_pred eEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHH---------------------
Confidence 356899999998864 689999999998754 334555555677665444321
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
. .+.+ ....|++..++.+||+.+|...|++.|++++.+++.....+
T Consensus 64 -------~--~g~~-------------------------r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~ 109 (238)
T COG0528 64 -------A--AGMD-------------------------RVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQV 109 (238)
T ss_pred -------H--cCCc-------------------------hhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccc
Confidence 1 1222 25679999999999999999999999999999877654211
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeec-CC
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TD-Vd 310 (387)
. + ++...+..++ ++++.|+|..|..|.. +.+ +|++|+++|..++|+-+...|+ ||
T Consensus 110 ~-------e------~~~~~~A~~~-l~~grVvIf~gGtg~P---~fT-------TDt~AALrA~ei~ad~ll~atn~VD 165 (238)
T COG0528 110 A-------E------PYSRREAIRH-LEKGRVVIFGGGTGNP---GFT-------TDTAAALRAEEIEADVLLKATNKVD 165 (238)
T ss_pred c-------C------ccCHHHHHHH-HHcCCEEEEeCCCCCC---CCc-------hHHHHHHHHHHhCCcEEEEeccCCC
Confidence 1 1 1112233333 3678999999966643 334 7999999999999999999995 99
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHH-HHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQ-CVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~-~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|||++||+++|||+.+++|||+|+.+.. -+| +|+.+.. |+|+.|+++|.|-.++ .+++.|++.||..
T Consensus 166 GVY~~DPkk~pdA~~~~~Lty~e~l~~~---l~v------mD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V 236 (238)
T COG0528 166 GVYDADPKKDPDAKKYDTLTYDEVLKIG---LKV------MDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIV 236 (238)
T ss_pred ceeCCCCCCCCCceecccCCHHHHHHhc---Cee------ecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEe
Confidence 9999999999999999999999998876 233 4777664 8999999999996554 6678899999864
No 55
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.91 E-value=1.1e-23 Score=211.93 Aligned_cols=174 Identities=20% Similarity=0.297 Sum_probs=131.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEc-CCcc
Q 016545 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVT-GFLG 271 (387)
Q Consensus 193 ~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~-Gfig 271 (387)
.++.+.+.|+.+...++...|.++|+++..+ ++|.++|.+.. .+-+.+..+ ..+++.+.|||+. +..-
T Consensus 67 ~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aqi------llt~~d~~~~~----~~lna~~~i-~~Ll~~g~iPVi~end~v 135 (363)
T TIGR01027 67 EKQALAAVGQVRLMQLYEQLFSQYGIKVAQI------LLTRADFSDRE----RYLNARNTL-EALLELGVVPIINENDTV 135 (363)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHcCCeEEEE------EEeccchhhHH----HHHHHHHHH-HHHHhCCCEEEEeCCCce
Confidence 3456789999999999999999999997554 66776665421 112222323 3345678899996 2111
Q ss_pred ccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH--HHHHHH-----HcCCcc
Q 016545 272 KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD--EAAELA-----YFGAQV 344 (387)
Q Consensus 272 ~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~--EA~eLa-----~~GakV 344 (387)
..+.+++|++|++|+++|.+|+|+.++|||||||||++||+.+|+|++|+++++. +..+++ .+|...
T Consensus 136 ------~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGG 209 (363)
T TIGR01027 136 ------ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGG 209 (363)
T ss_pred ------eeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCC
Confidence 1245888999999999999999999999999999999999999999999999974 444554 355555
Q ss_pred cccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 345 NISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 345 l~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|+|++ .++..+.++.++++|.+...| .+++.|+.+||.+
T Consensus 210 M~~Kl---~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i 251 (363)
T TIGR01027 210 MRTKL---QAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLF 251 (363)
T ss_pred chHHH---HHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEE
Confidence 66554 456777889999999998765 7888899889854
No 56
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.91 E-value=3.2e-23 Score=198.15 Aligned_cols=219 Identities=19% Similarity=0.201 Sum_probs=163.7
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s-------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
.+.+|+|++|..+.. ++.++++++.|+... +.+..||| ++|++-.-..
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVv-GGGni~Rg~~---------------------- 71 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVV-GGGNILRGGR---------------------- 71 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEE-CCCHHHhCch----------------------
Confidence 356899999998863 478999999988653 33555555 4555432100
Q ss_pred HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEeccccee
Q 016545 151 VKDLHHRTVD-ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (387)
Q Consensus 151 i~~~h~~~~~-~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ 229 (387)
.+ ..+. +....|++..++.++|+.++...|++.|++++.+++-..
T Consensus 72 --------~~~~~~~-------------------------~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~- 117 (249)
T PRK14556 72 --------ANFGNKI-------------------------RRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGV- 117 (249)
T ss_pred --------hhccCCC-------------------------chhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc-
Confidence 00 0112 235779999999999999999999999999998877443
Q ss_pred eEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
..+ +++. +++. ..+. ++++.|+|+.|+.|.. ..+ +|++|+++|..++|+.+.+||||
T Consensus 118 ----~~~--~e~~--~~~~----~~~~-l~~g~vvi~~gg~G~p----~~S------tD~lAallA~~l~Ad~Lii~TdV 174 (249)
T PRK14556 118 ----DGL--LKVA--SAHE----FNQE-LAKGRVLIFAGGTGNP----FVT------TDTTASLRAVEIGADALLKATTV 174 (249)
T ss_pred ----CcC--CCCC--CHHH----HHHH-HhCCCEEEEECCCCCC----cCC------cHHHHHHHHHHcCCCEEEEEeCC
Confidence 111 2221 2332 3333 3667899989988753 244 89999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
||||++||+++|+|+++++|+|+|+.+. +.++++ ..+++.|.++.++++|.+..++ .+++.|+.+||..
T Consensus 175 DGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd-----~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i 246 (249)
T PRK14556 175 NGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMD-----LGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWV 246 (249)
T ss_pred CccCCCCCCCCCCceEeeEEchhhhccc---chHhHH-----HHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEE
Confidence 9999999999999999999999998763 445554 2457778999999999998766 7888999999853
No 57
>PLN02512 acetylglutamate kinase
Probab=99.89 E-value=6.6e-22 Score=195.25 Aligned_cols=243 Identities=17% Similarity=0.226 Sum_probs=166.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
++.|.||||+++.+.+....+.+-|.... ...++|+|+++|...+.+++.
T Consensus 48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~----------------------------- 98 (309)
T PLN02512 48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKK----------------------------- 98 (309)
T ss_pred CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH-----------------------------
Confidence 67999999999998766555555444221 223455666666665555432
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
++.++ ++.+|++. .++.+.+.+ +.+.-++|..|+ ++|++.|++++++++.+.++++.+.+.+
T Consensus 99 --~gi~~-----------~~~~G~rv---T~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~~~ 161 (309)
T PLN02512 99 --VGIEP-----------QFKNGLRV---TDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPSPN 161 (309)
T ss_pred --cCCCC-----------cCCCCCcC---CCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEcCc
Confidence 12221 11122222 233444443 232236688877 4799999999999999988888875532
Q ss_pred -------ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 239 -------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 239 -------a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
+++...+.+.++. +++.+.|||++|+ +.+ .+|+..+++ +|++|+.||.+|+|+++++||||||
T Consensus 162 ~~~~~~~G~i~~v~~~~i~~-----lL~~g~IPVi~~~-~~d-~~g~~~~i~---~D~~A~~lA~~L~Ad~li~lTdV~G 231 (309)
T PLN02512 162 SADLGFVGEVTRVDPTVLRP-----LVDDGHIPVIATV-AAD-EDGQAYNIN---ADTAAGEIAAALGAEKLILLTDVAG 231 (309)
T ss_pred CccccccceeeecCHHHHHH-----HHhCCCEEEEeCc-eEC-CCCCEeccC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 3444444444443 3466899999995 777 588888887 9999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHH---Hhcc-eEEEeeCCcc----ccccccCCCC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCV---RALH-ETFFESDLAN----LDCVCGSENN 383 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~---ra~i-~~~i~~~~~~----~~~~~g~~~g 383 (387)
||++|| +++++|++|+++|+.++...| ....+| .++.+.+. +..+ +++|.++..+ .+++.++.+|
T Consensus 232 V~~~~~---~~~~lI~~i~~~e~~~l~~~~--~vtGGM--~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~G 304 (309)
T PLN02512 232 VLEDKD---DPGSLVKELDIKGVRKLIADG--KIAGGM--IPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAG 304 (309)
T ss_pred eeCCCC---CCcCCCcccCHHHHHHHHhCC--CCCCcH--HHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCe
Confidence 999874 458999999999999998765 334454 45655543 4345 5788888655 3567788888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|.+
T Consensus 305 T~I 307 (309)
T PLN02512 305 TMI 307 (309)
T ss_pred eEE
Confidence 864
No 58
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.89 E-value=8e-22 Score=190.50 Aligned_cols=217 Identities=18% Similarity=0.242 Sum_probs=150.9
Q ss_pred ceEEEEeCccccCC--HHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s--~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
.+.|.|+|||.+.+ .+.++++++.|++..+...+++|++.|....... ..
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~~~----------------------------~~ 82 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARHVY----------------------------SI 82 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH----------------------------HH
Confidence 45899999999954 6789999999886544445556654433221111 11
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
...++.+ ....|++.....++|+.++...|...|++++.. .
T Consensus 83 ~~~~g~~-------------------------~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~~----------~---- 123 (262)
T cd04255 83 GLDLGMP-------------------------TGVLAKLGASVSEQNAEMLATLLAKHGGSKVGH----------G---- 123 (262)
T ss_pred HHHcCCC-------------------------chHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc----------c----
Confidence 1123322 134455555556788888878888888876311 0
Q ss_pred ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCc------chhHHHHHHHHcCCceEEEeecCCcc
Q 016545 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG------SDLTATTIGKALGLQEIQVWKDVDGV 312 (387)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGG------SD~tAa~LA~aL~A~~v~i~TDVdGV 312 (387)
+...+.+ +++.+.|||+.|+.+.+ ..++++|+| +|+.|+++|.+|+|+.+++|||||||
T Consensus 124 ------~~~~l~~-----lL~~g~vPVi~g~~~~~----~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGV 188 (262)
T cd04255 124 ------DLLQLPT-----FLKAGRAPVISGMPPYG----LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGL 188 (262)
T ss_pred ------cHHHHHH-----HHHCCCeEEEeCCcCCC----eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCee
Confidence 1112322 24678999999998754 246677777 99999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHH-h--cceEEEeeCCcc---ccccccCCCCccC
Q 016545 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVR-A--LHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 313 ~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~r-a--~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|++||+.+|+|++|++++++|+.++...+ .++ +..+...++ + .++++|.++..+ .+++.|+.+||.+
T Consensus 189 y~~dP~~~~~a~~i~~i~~~~~~~~~~~~-~~~------~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i 261 (262)
T cd04255 189 YTADPKKNKKAEFIPEISAAELLKKDLDD-LVL------ERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261 (262)
T ss_pred ECCCCCCCCCCeEccEeCHHHHHHHhcCC-CCC------cHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEe
Confidence 99999999999999999999988875222 223 233443333 2 368899998765 7788899999864
No 59
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.88 E-value=2.4e-21 Score=189.16 Aligned_cols=241 Identities=18% Similarity=0.241 Sum_probs=167.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
.+.|.|+||+.+.+....+.+++-|.... ...++|+|++.|..-+.+++.
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~----------------------------- 74 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQ----------------------------- 74 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHH-----------------------------
Confidence 58999999999988654555665554322 234467777777665555432
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC--
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~-- 236 (387)
++.++ ++.+|+++ .++.+.+.+ +.+.-.+|..|++ +|++.|++++++++.+.++++....
T Consensus 75 --~g~~~-----------~~~~G~rv---T~~~~l~~~~~~l~g~ln~~lv~-~L~~~Gv~av~l~~~d~~~i~a~~~~~ 137 (284)
T CHL00202 75 --LNISP-----------KFWNGIRV---TDKVTMEIVEMVLAGKVNKDLVG-SINANGGKAVGLCGKDANLIVARASDK 137 (284)
T ss_pred --CCCCC-----------EeECCccc---CCHHHHHHHHHHHhhHHHHHHHH-HHHhCCCCeeeeeeccCCEEEEEeCCC
Confidence 22222 12233333 344555554 2344456888775 6899999999999999888876532
Q ss_pred ---CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcc
Q 016545 237 ---TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (387)
Q Consensus 237 ---~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV 312 (387)
+. +++...+.+.++. +++.+.|||++| ++.+ ..|++.+++ +|++|+.+|.+|+|++++||||||||
T Consensus 138 ~d~~~~G~i~~v~~~~i~~-----ll~~g~iPVi~~-~~~~-~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv 207 (284)
T CHL00202 138 KDLGLVGEIQQVDPQLIDM-----LLEKNYIPVIAS-VAAD-HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGI 207 (284)
T ss_pred cccccceeEEecCHHHHHH-----HHHCCCEEEECC-CccC-CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhh
Confidence 22 3454455555543 246688999998 4777 489999998 99999999999999999999999999
Q ss_pred ccc--CCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHH---hcc-eEEEeeCCcc----ccccccCCC
Q 016545 313 LTC--DPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVR---ALH-ETFFESDLAN----LDCVCGSEN 382 (387)
Q Consensus 313 ~ta--DPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~r---a~i-~~~i~~~~~~----~~~~~g~~~ 382 (387)
|+. || .++|++++++|+.+++..| ....+| .++.+.|.+ ..+ ++.|.++..+ .++++++..
T Consensus 208 ~~~~~d~-----~~~i~~i~~~e~~~l~~~g--~~tGGM--~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~ 278 (284)
T CHL00202 208 LADINDP-----NSLISTLNIKEARNLASTG--IISGGM--IPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGI 278 (284)
T ss_pred cCCCCCC-----CCccccccHHHHHHHHhcC--CCCCCH--HHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCC
Confidence 984 33 3799999999999999876 334444 455555433 334 5778887654 677778888
Q ss_pred CccC
Q 016545 383 NSSL 386 (387)
Q Consensus 383 g~~~ 386 (387)
||.+
T Consensus 279 GT~i 282 (284)
T CHL00202 279 GSML 282 (284)
T ss_pred ceEE
Confidence 8865
No 60
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=5.4e-21 Score=184.09 Aligned_cols=230 Identities=19% Similarity=0.259 Sum_probs=157.6
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHHh
Q 016545 83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (387)
Q Consensus 83 ~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L 162 (387)
.|.||||+.+.+. +++++.|... + .++|+|+++|...+.+++. +
T Consensus 1 ~VIKlGGs~l~~~---~~~~~~i~~l-g-~~~VlVHGgg~~i~~~~~~-------------------------------~ 44 (257)
T cd04251 1 IVVKIGGSVVSDL---DKVIDDIANF-G-ERLIVVHGGGNYVNEYLKR-------------------------------L 44 (257)
T ss_pred CEEEEChHHhhCh---HHHHHHHHHc-C-CCEEEECCCHHHHHHHHHH-------------------------------c
Confidence 4899999999864 4577777655 3 3478888888877766542 1
Q ss_pred CCCHHHHHHHHHHHHHHHH---HhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC---
Q 016545 163 GIDRSIIATHLEELEQLLK---GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--- 236 (387)
Q Consensus 163 ~~~~~~I~~~~~~L~~ll~---gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~--- 236 (387)
++++. +.+ |+. .+-.+++..+.+....+++|..|++ +|+++|++++++++.+.++++.+..
T Consensus 45 gi~~~-----------~~~~~~G~~-~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~ 111 (257)
T cd04251 45 GVEPK-----------FVTSPSGIR-SRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIV 111 (257)
T ss_pred CCCcE-----------EEeCCCCCc-cccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecc
Confidence 11110 000 100 0123445666664333889999876 8999999999999999876654422
Q ss_pred -------------CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCce
Q 016545 237 -------------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302 (387)
Q Consensus 237 -------------~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~ 302 (387)
+. +++...+.+.++. +++.+.|||+++| +.+ .+|++++++ +|++|+.+|.+|+|++
T Consensus 112 ~~~~~~~~~~~d~~~~G~v~~v~~~~i~~-----ll~~g~vpVi~~~-~~~-~~G~~~~i~---~D~~A~~lA~~L~A~~ 181 (257)
T cd04251 112 RVNERGRKMIIRGGYTGKVEKVNSDLIEA-----LLDAGYLPVVSPV-AYS-EEGEPLNVD---GDRAAAAIAAALKAER 181 (257)
T ss_pred cccccCcccccCCcceEEEEEEcHHHHHH-----HHhCCCeEEEeCc-EEC-CCCcEEecC---HHHHHHHHHHHcCCCE
Confidence 11 2444444444443 2467899999875 445 479999997 9999999999999999
Q ss_pred EEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHH---HHHHhcc-eEEEeeCCcc---cc
Q 016545 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAE---QCVRALH-ETFFESDLAN---LD 375 (387)
Q Consensus 303 v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~---~~~ra~i-~~~i~~~~~~---~~ 375 (387)
++|||||||||++ +++|++|+++|+.++... ...+| .++.+ .+.++.+ +++|.+...| .+
T Consensus 182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~----~~ggm--~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~ 248 (257)
T cd04251 182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEK----AGGGM--KRKLLAAAEAVEGGVREVVIGDARADSPISS 248 (257)
T ss_pred EEEEeCChhheeC-------CcccCccCHHHHHHHHhh----CCCch--HHHHHHHHHHHHcCCCEEEEecCCCccHHHH
Confidence 9999999999963 789999999999999843 23333 23433 4455544 7778887554 56
Q ss_pred ccccCCCCccC
Q 016545 376 CVCGSENNSSL 386 (387)
Q Consensus 376 ~~~g~~~g~~~ 386 (387)
++.| .||..
T Consensus 249 ~l~g--~gT~i 257 (257)
T cd04251 249 ALNG--GGTVI 257 (257)
T ss_pred HHcC--CCcCC
Confidence 7777 38763
No 61
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.85 E-value=8.8e-21 Score=182.28 Aligned_cols=242 Identities=20% Similarity=0.303 Sum_probs=179.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
+.+.|.|+||+.+.+.+.+..+++-|... -..++ |||++.|...|++++.
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~-VvVHGggp~I~~~l~~--------------------------- 53 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRP-VVVHGGGPQIDEMLAK--------------------------- 53 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcE-EEEeCCchHHHHHHHH---------------------------
Confidence 57899999999999988888888865433 24466 6777778777766642
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC-
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~- 235 (387)
+++++ +|.+++++ .+..+.+.+ +.++-.+|..|++ .|++.|.+++.+++.|.++++...
T Consensus 54 ----~gie~-----------~f~~glRv---Td~~tlevv~mvl~G~vNk~iva-~l~~~g~~avGlsg~Dg~li~A~~~ 114 (265)
T COG0548 54 ----LGIEP-----------EFVKGLRV---TDAETLEVVEMVLGGTVNKEIVA-RLSKHGGQAVGLSGVDGNLVTAKKL 114 (265)
T ss_pred ----cCCCC-----------eeeCCEEc---CCHHHHHHHHHHHHHHHHHHHHH-HHHHhCCcceeeeecCCCEEEEEEc
Confidence 33333 34455544 344666655 5677778999886 689999999999999988998753
Q ss_pred -------CCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEee
Q 016545 236 -------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 236 -------~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~T 307 (387)
++. +++...+.+.++ .+++.+.|||++. +|.+ .+|++.|++ +|++|+.+|.+|+|++++++|
T Consensus 115 ~~~~~id~g~vG~i~~Vn~~~i~-----~ll~~~~IpViap-ia~~-~~G~~~Nvn---aD~~A~~iA~aLkAekLi~lt 184 (265)
T COG0548 115 DVDDGVDLGYVGEIRKVNPELIE-----RLLDNGAIPVIAP-IAVD-EDGETLNVN---ADTAAGALAAALKAEKLILLT 184 (265)
T ss_pred ccccccccceeeeEEEECHHHHH-----HHHhCCCceEEec-ceEC-CCCcEEeeC---HHHHHHHHHHHcCCCeEEEEe
Confidence 333 345455554443 3346788999987 8888 599999999 999999999999999999999
Q ss_pred cCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHH---HHHHh-cceEEEeeCCcc----cccccc
Q 016545 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAE---QCVRA-LHETFFESDLAN----LDCVCG 379 (387)
Q Consensus 308 DVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~---~~~ra-~i~~~i~~~~~~----~~~~~g 379 (387)
||+||++.+|.. ..|+.++.+|+.+|...| ++..+| .++.+ .+.+. +-++.|.|+..+ .++-+.
T Consensus 185 dv~Gvl~~~~~~----s~i~~~~~~~~~~li~~~--~i~~GM--i~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~ 256 (265)
T COG0548 185 DVPGVLDDKGDP----SLISELDAEEAEELIEQG--IITGGM--IPKVEAALEALESGVRRVHIISGRVPHSLLLELFTR 256 (265)
T ss_pred CCcccccCCCCc----eeeccCCHHHHHHHHhcC--CccCcc--HHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcC
Confidence 999999987642 689999999999999987 444443 23333 33444 448899999887 445566
Q ss_pred CCCCccC
Q 016545 380 SENNSSL 386 (387)
Q Consensus 380 ~~~g~~~ 386 (387)
..+||..
T Consensus 257 ~giGT~i 263 (265)
T COG0548 257 DGIGTMI 263 (265)
T ss_pred CCcceEe
Confidence 7777754
No 62
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.78 E-value=3.2e-18 Score=167.21 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=121.5
Q ss_pred HhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccC--
Q 016545 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-- 274 (387)
Q Consensus 197 Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~-- 274 (387)
+.+.|...--.+-...|.++|+++ .++ ++|.++|.+.+. +.+..+.+. .+++.+.|||+.|+-....
T Consensus 97 ~aa~gq~~L~~~y~~~f~~~~~~~-----~q~-llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVi~~nD~v~~~~ 165 (284)
T cd04256 97 CAAVGQSGLMALYEAMFTQYGITV-----AQV-LVTKPDFYDEQT----RRNLNGTLE-ELLRLNIIPIINTNDAVSPPP 165 (284)
T ss_pred HHHcccHHHHHHHHHHHHHcCCcH-----HHe-eeeccccccHHH----HHHHHHHHH-HHHHCCCEEEEeCCCcccccc
Confidence 445565555555566788888876 444 788888877543 223333333 4457789999986333221
Q ss_pred ---CCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc-CCcccccccc
Q 016545 275 ---RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-GAQVNISLIV 350 (387)
Q Consensus 275 ---~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~-GakVl~~~~v 350 (387)
.+|+..+ .=+.+|+.|+.+|.+++|+.++++|||||||++||+ .|++++|++++.+|..++.+. +..+...+|.
T Consensus 166 ~~~~~~~~~~-~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~ 243 (284)
T cd04256 166 EPDEDLQGVI-SIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGME 243 (284)
T ss_pred cccccccccc-cccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcH
Confidence 0111111 013599999999999999999999999999999997 599999999999887776542 1223344442
Q ss_pred c-chhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 351 N-DDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 351 ~-~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
. -.++..+.++.++++|.++..+ .++++|+.+||.+
T Consensus 244 ~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~ 283 (284)
T cd04256 244 AKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF 283 (284)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence 1 1344556788899999998665 7888999999864
No 63
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.78 E-value=2.3e-18 Score=186.97 Aligned_cols=239 Identities=15% Similarity=0.215 Sum_probs=149.1
Q ss_pred CceEEEEeCccccCCHH------HHHHHHHHHhcC--CCCCcEEEEc---CCCcCchHHHHHhHHHhhcCCCCcchhHHH
Q 016545 80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLS---AMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e------~i~~Va~iI~~~--~~~~~vVVVS---A~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l 148 (387)
++.+|.|||||++.+.+ .+.++++.|... .+.+.|+|+| |+|..+..+.+....
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~--------------- 71 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNS--------------- 71 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccc---------------
Confidence 46799999999998754 899999988753 2446677788 556555433321100
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhhHHHHHHHHHHHHHcCCCeEEeccc
Q 016545 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAF 226 (387)
Q Consensus 149 ~~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~ 226 (387)
+.. .+ ..+....+.. .+.|...-..+-...+.+.++. +.
T Consensus 72 --------------~~~-------------------~~-~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~-----~a 112 (715)
T TIGR01092 72 --------------SFA-------------------DL-QKPQPELDGKACAAVGQSGLMALYETMFTQLDIT-----AA 112 (715)
T ss_pred --------------ccc-------------------cc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eE
Confidence 000 00 0000111222 2223221122223344555554 44
Q ss_pred ceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCc---------chhHHHHHHHH
Q 016545 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKA 297 (387)
Q Consensus 227 d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGG---------SD~tAa~LA~a 297 (387)
++ ++|.++|.+.+. +.+.++.+. .+++.+.|||+.+ ++.+++.+++| +|+.|++||.+
T Consensus 113 Q~-Llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVin~-------nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~ 179 (715)
T TIGR01092 113 QI-LVTDLDFRDEQF----RRQLNETVH-ELLRMNVVPVVNE-------NDAVSTRAAPYSDSQGIFWDNDSLAALLALE 179 (715)
T ss_pred EE-EechhhcccHHH----HHHHHHHHH-HHHHCCCEEEEcC-------CCcccccccccccccceecchHHHHHHHHHH
Confidence 55 788888776543 222333333 3457789999964 23455666655 69999999999
Q ss_pred cCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCC-c-cccccccc-chhHHHHHHhcceEEEeeCCcc-
Q 016545 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA-Q-VNISLIVN-DDEAEQCVRALHETFFESDLAN- 373 (387)
Q Consensus 298 L~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~Ga-k-Vl~~~~v~-~~~~~~~~ra~i~~~i~~~~~~- 373 (387)
|+|+.+++||||||||++||+ .|++++|++++..+..+...+|. . ....+|.. ..++..+.++.++++|.++..+
T Consensus 180 l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~ 258 (715)
T TIGR01092 180 LKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPK 258 (715)
T ss_pred cCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 999999999999999999997 59999999999766653222221 1 12233421 1334456778899999988655
Q ss_pred --ccccccCCCCccC
Q 016545 374 --LDCVCGSENNSSL 386 (387)
Q Consensus 374 --~~~~~g~~~g~~~ 386 (387)
.+++.|+.+||.+
T Consensus 259 ~l~~~l~g~~~GT~~ 273 (715)
T TIGR01092 259 NITKVVEGKKVGTLF 273 (715)
T ss_pred hHHHHhcCCCCceEe
Confidence 6778899889865
No 64
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.76 E-value=3.7e-17 Score=158.21 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcch
Q 016545 209 FAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSD 288 (387)
Q Consensus 209 l~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD 288 (387)
....|.++|+++..+ +++..++.+.. .+.+..+.+. .+++.+.|||+.|.-... ..+.. + |.+|
T Consensus 87 y~~~f~~~~~~~aqi------Llt~~d~~~~~----~~~n~~~~l~-~lL~~g~VPIinend~~~--~~e~~-~--gdnD 150 (264)
T PTZ00489 87 YYTELQKHGILCAQM------LLAAYDLDSRK----RTINAHNTIE-VLISHKVIPIINENDATA--LHELV-F--GDND 150 (264)
T ss_pred HHHHHHhCCCeEEEe------eeeccccccch----hhHHHHHHHH-HHHHCCCEEEECCCCCcc--cceeE-e--CChH
Confidence 456788999988665 45555543311 1222333333 345778999998822111 12332 2 3499
Q ss_pred hHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCcc---ccccCHHHHHHHHHcCCccccccccc-chhHHHHHHhcce
Q 016545 289 LTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP---VPYLTFDEAAELAYFGAQVNISLIVN-DDEAEQCVRALHE 364 (387)
Q Consensus 289 ~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~---I~~Lsy~EA~eLa~~GakVl~~~~v~-~~~~~~~~ra~i~ 364 (387)
..|+++|.+++|+.++|+|||||||++||+..|+|++ ++++++++.......+......+|.. ..++..+.++.++
T Consensus 151 ~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~ 230 (264)
T PTZ00489 151 RLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGK 230 (264)
T ss_pred HHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999998 88999887754332122333455533 2345567888999
Q ss_pred EEEeeCCcc---ccccccC--CCCccC
Q 016545 365 TFFESDLAN---LDCVCGS--ENNSSL 386 (387)
Q Consensus 365 ~~i~~~~~~---~~~~~g~--~~g~~~ 386 (387)
++|.++.++ .+++.|+ .+||-+
T Consensus 231 v~I~~g~~~~~i~~~l~g~~~~~GT~~ 257 (264)
T PTZ00489 231 MYLSSGFHLEKARDFLIGGSHEIGTLF 257 (264)
T ss_pred EEEEeCCCchHHHHHHcCCCCCCceEE
Confidence 999998765 6677664 478853
No 65
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.71 E-value=4.3e-16 Score=149.37 Aligned_cols=230 Identities=17% Similarity=0.209 Sum_probs=152.3
Q ss_pred EEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHHh
Q 016545 84 VMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (387)
Q Consensus 84 V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L 162 (387)
|.|+||+.+.+. +.++++-|.... ...++|+|++.|..-+.+++ ++
T Consensus 2 ViKiGG~~~~~~--l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~-------------------------------~~ 48 (248)
T cd04252 2 VIKVGGAIIEDD--LDELAASLSFLQHVGLYPIVVHGAGPQLNEELE-------------------------------AA 48 (248)
T ss_pred EEEEChhhhhcc--HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHH-------------------------------Hc
Confidence 899999999874 566766665432 22234777777766665553 22
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEee-----CCC
Q 016545 163 GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT-----DDF 236 (387)
Q Consensus 163 ~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~-----~~~ 236 (387)
+++. ++.+|+++ .++...+.+ .+++ .+|..+++. |+++|++++++.+. +++. .+|
T Consensus 49 gi~~-----------~~~~g~Rv---T~~~~l~~v~~al~-~vn~~iv~~-l~~~g~~a~~l~~~---~~~a~~~~~~d~ 109 (248)
T cd04252 49 GVEP-----------EYVDGLRV---TDPETLAVARKVFL-EENLKLVEA-LERNGARARPITSG---VFEAEYLDKDKY 109 (248)
T ss_pred CCCc-----------EeeCCccc---CCHHHHHHHHHHHH-HHHHHHHHH-HHhCCCCcccccCc---eEEEEECcCccC
Confidence 3332 12233333 234444444 4666 678888865 88999999999875 2332 234
Q ss_pred CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccccc
Q 016545 237 TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (387)
Q Consensus 237 ~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ta 315 (387)
+. +++...+.+.+++. ++.+.|||+++ +|.+ .+|++.+++ +|..|+.+|.+|+|+++.|.|||||||+.
T Consensus 110 g~~G~v~~i~~~~i~~~-----L~~g~IPVi~p-~~~~-~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~ 179 (248)
T cd04252 110 GLVGKITGVNKAPIEAA-----IRAGYLPILTS-LAET-PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG 179 (248)
T ss_pred CccCceeeECHHHHHHH-----HHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC
Confidence 32 45545555555543 46789999997 7777 488999999 99999999999999999999999999964
Q ss_pred CCCCCCCCccccccCH-HHHHHHHHcCCcccccccccchhHH---HHHHh---cceEEEeeCCcc-ccccccCCCCcc
Q 016545 316 DPNIHPHAKPVPYLTF-DEAAELAYFGAQVNISLIVNDDEAE---QCVRA---LHETFFESDLAN-LDCVCGSENNSS 385 (387)
Q Consensus 316 DPr~v~~Ak~I~~Lsy-~EA~eLa~~GakVl~~~~v~~~~~~---~~~ra---~i~~~i~~~~~~-~~~~~g~~~g~~ 385 (387)
+.++|++|+. +++.+|...| .+.++| .++.+ .+.+. .+.+.|.+.... .++.+-..+||.
T Consensus 180 ------~g~~i~~i~~~~~~~~l~~~~--~vtgGM--~~Kl~~~~~~~~~~~~~~~v~i~~~~~ll~elf~~~g~GT~ 247 (248)
T cd04252 180 ------TGKKISAINLDEEYDDLMKQP--WVKYGT--KLKIKEIKELLDTLPRSSSVSITSPDDLQKELFTHSGAGTL 247 (248)
T ss_pred ------CCCcccccCHHHHHHHHHHcC--CcCCch--HHHHHHHHHHHHhCCCceEEEEECCchHHHHHhcCCCCCcc
Confidence 3678999997 5787888655 344554 34444 34443 567788776554 333333336764
No 66
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.70 E-value=5.5e-16 Score=159.35 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=155.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
.+.|.|+||+.+.+++ +..+++-|.... ...++|+|++.|...|++++
T Consensus 18 ~~~ViK~GG~~~~~~~-~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~------------------------------ 66 (429)
T TIGR01890 18 KTFVVGLGGELVEGGN-LGNIVADIALLHSLGVRLVLVHGARPQIERILA------------------------------ 66 (429)
T ss_pred CEEEEEEChhhccCcc-HHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH------------------------------
Confidence 6899999999997753 456666555432 23457788887766665553
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEE-----ecccceeeEeeC
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQ-----YDAFDIGFITTD 234 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~-----ld~~d~~iit~~ 234 (387)
.+++++ ++.+|+++ .++.+.+.+......+|..|.+ .|++. +++.+ +.+.|.++++..
T Consensus 67 -~~g~~~-----------~~~~G~Rv---T~~~~l~~~~~~~g~vn~~l~~-~l~~~-~~~~~~~~~~l~~~dg~~~~a~ 129 (429)
T TIGR01890 67 -ARGRTP-----------HYHRGLRV---TDEASLEQAQQAAGTLRLAIEA-RLSMS-LSNTPMAGSRLPVVSGNFVTAR 129 (429)
T ss_pred -HcCCCc-----------eeeCCccc---CCHHHHHHHHHHhChHHHHHHH-HHHhc-CCcccccccCceEccceEEEEE
Confidence 233443 33445554 3445555553334466877775 46555 54433 556666666533
Q ss_pred --------CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEE
Q 016545 235 --------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (387)
Q Consensus 235 --------~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i 305 (387)
+++. +++...+.+.++.. ++.+.|||++. ++.+ .+|+..+++ +|..|+.||.+|+|+++++
T Consensus 130 ~~~~~~~~~~g~~G~v~~v~~~~l~~l-----l~~g~ipvi~p-i~~~-~~g~~~nvn---aD~~A~~lA~al~a~kli~ 199 (429)
T TIGR01890 130 PIGVIEGVDYEHTGVIRKIDTEGIRRQ-----LDAGSIVLLSP-LGHS-PTGETFNLD---MEDVATSVAISLKADKLIY 199 (429)
T ss_pred ECCCCcCccccccceEEEEcHHHHHHH-----HHCCCeEEECC-cccC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEE
Confidence 2333 45555565555442 46688999987 7887 589999999 9999999999999999999
Q ss_pred eecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHH---HHh-cceEEEeeCCcc----cccc
Q 016545 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQC---VRA-LHETFFESDLAN----LDCV 377 (387)
Q Consensus 306 ~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~---~ra-~i~~~i~~~~~~----~~~~ 377 (387)
.|||||||+. +.++|++|+.+|+.+|..... ..| +.++.+.| .+. +.++.|.++..+ ..+.
T Consensus 200 ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~----~~~-~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~ 268 (429)
T TIGR01890 200 FTLSPGISDP------DGTLAAELSPQEVESLAERLG----SET-TRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELF 268 (429)
T ss_pred EeCCCcccCC------CCCCcccCCHHHHHHHHHhcc----CCC-cHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHh
Confidence 9999999963 367999999999999976421 121 23444443 343 468888888655 3333
Q ss_pred ccCCCCccC
Q 016545 378 CGSENNSSL 386 (387)
Q Consensus 378 ~g~~~g~~~ 386 (387)
+....||.+
T Consensus 269 ~~~g~GT~i 277 (429)
T TIGR01890 269 TRDGIGTSI 277 (429)
T ss_pred cCCCCcceE
Confidence 455567654
No 67
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.68 E-value=2.7e-15 Score=146.43 Aligned_cols=238 Identities=17% Similarity=0.203 Sum_probs=151.3
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+++.|.|+||+.+.+. .++++++-|.... ...++|+|++.|...+++++.
T Consensus 18 ~~~~VIKlGG~ai~~~-~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~---------------------------- 68 (280)
T cd04237 18 GKTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAE---------------------------- 68 (280)
T ss_pred CCEEEEEEChHHhcCc-hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHH----------------------------
Confidence 3679999999999764 3455665554332 234566777777666655432
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEeccc-----ceeeEe
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAF-----DIGFIT 232 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~-----d~~iit 232 (387)
+++++ ++.+|+++ .++...+.+ .++|+. +..|. +.|+. |++++++.+. +..++.
T Consensus 69 ---~gi~~-----------~~~~G~Rv---T~~~~l~~~~~~~g~v-~~~l~-~~l~~-~~~a~~~~~~~~~~~~~~~v~ 128 (280)
T cd04237 69 ---RGLEP-----------RYHRGLRI---TDAAALECVKEAAGAV-RLEIE-ALLSM-GLPNSPMAGARIRVVSGNFVT 128 (280)
T ss_pred ---cCCCc-----------cccCCcCc---CCHHHHHHHHHHHHHH-HHHHH-HHHHh-hccccCcCCCceEEecCeEEE
Confidence 22222 22233333 334444444 345655 77754 45654 8888755432 222333
Q ss_pred eCC--------CC-CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceE
Q 016545 233 TDD--------FT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEI 303 (387)
Q Consensus 233 ~~~--------~~-~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v 303 (387)
... |+ .+++...+.+.+++ +++.+.|||+++ +|.+ .+|+..+++ +|..|+.||.+|+|+++
T Consensus 129 ~~~~~~~~~~~~g~~G~v~~v~~~~i~~-----lL~~g~ipv~~~-~g~~-~~g~~lnvn---aD~~A~~LA~~L~a~kl 198 (280)
T cd04237 129 ARPLGVVDGVDFGHTGEVRRIDADAIRR-----QLDQGSIVLLSP-LGYS-PTGEVFNLS---MEDVATAVAIALKADKL 198 (280)
T ss_pred EEECCcccCceEeeeccEEEEcHHHHHH-----HHHCCCEEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHHcCCCEE
Confidence 321 11 13343344444443 346678999987 7777 589999999 99999999999999999
Q ss_pred EEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHh---cc-eEEEeeCCcc----cc
Q 016545 304 QVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRA---LH-ETFFESDLAN----LD 375 (387)
Q Consensus 304 ~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra---~i-~~~i~~~~~~----~~ 375 (387)
.|.|||||||++ ++++|++++.+|+.++...|.- ...+| .++.+.+.++ .+ ++.|.+...+ .+
T Consensus 199 v~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~-~~ggM--~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~e 269 (280)
T cd04237 199 IFLTDGPGLLDD------DGELIRELTAQEAEALLETGAL-LTNDT--ARLLQAAIEACRGGVPRVHLISYAEDGALLLE 269 (280)
T ss_pred EEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCC-CCCCH--HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHH
Confidence 999999999973 4789999999999999987743 24455 5676666554 55 8888888555 33
Q ss_pred ccccCCCCcc
Q 016545 376 CVCGSENNSS 385 (387)
Q Consensus 376 ~~~g~~~g~~ 385 (387)
+.+-...||.
T Consensus 270 lft~~g~GT~ 279 (280)
T cd04237 270 LFTRDGVGTL 279 (280)
T ss_pred HhcCCCCCCc
Confidence 3333345553
No 68
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.67 E-value=3.9e-15 Score=147.12 Aligned_cols=159 Identities=21% Similarity=0.341 Sum_probs=120.6
Q ss_pred HHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceee--eCCCc
Q 016545 209 FAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGG 286 (387)
Q Consensus 209 l~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~tt--LgRGG 286 (387)
-...|..+|++.-.+ ++|.+++.+.+ .+.+.+..+. .|++.+.|||| | ++..+.+ +--|-
T Consensus 89 y~~~f~~~g~~v~Qi------LLTr~D~~~r~----ry~Nar~Tl~-~Ll~~gvVPII------N-ENDtva~~EikfGD 150 (369)
T COG0263 89 YEELFARYGIKVGQI------LLTRDDFSDRR----RYLNARNTLS-ALLELGVVPII------N-ENDTVATEEIKFGD 150 (369)
T ss_pred HHHHHHhcCCeeeEE------EeehhhhhhHH----HHHHHHHHHH-HHHHCCceeee------c-CCCceeeeeeeecC
Confidence 356788899987665 67777765532 3445555554 34677899999 3 2332222 44567
Q ss_pred chhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCH--HHHHHHHH-cCCccccccccc-chhHHHHHHhc
Q 016545 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-FGAQVNISLIVN-DDEAEQCVRAL 362 (387)
Q Consensus 287 SD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy--~EA~eLa~-~GakVl~~~~v~-~~~~~~~~ra~ 362 (387)
.|..++++|...+||.+.++||+||+||+|||.+|+|++|++++- .|...++- .|.++-..+|.. ..+++.+.++.
T Consensus 151 ND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG 230 (369)
T COG0263 151 NDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAG 230 (369)
T ss_pred CchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999999874 56777765 444554555644 35566789999
Q ss_pred ceEEEeeCCcc---ccccccCCCCcc
Q 016545 363 HETFFESDLAN---LDCVCGSENNSS 385 (387)
Q Consensus 363 i~~~i~~~~~~---~~~~~g~~~g~~ 385 (387)
++++|+++..+ .+++.|+..||-
T Consensus 231 ~~~iI~~g~~~~~i~~~~~~~~~GT~ 256 (369)
T COG0263 231 VPVIIASGSKPDVILDALEGEAVGTL 256 (369)
T ss_pred CcEEEecCCCcchHHHHHhCCCCccE
Confidence 99999999775 888999999984
No 69
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.66 E-value=4.4e-15 Score=144.17 Aligned_cols=227 Identities=10% Similarity=0.073 Sum_probs=155.1
Q ss_pred CCCCceEEEEeCccccCCHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHH
Q 016545 77 SEKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (387)
Q Consensus 77 ~~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (387)
+..+...|.|+||+.+.+++.+..++.-|.-.. +-++|+ |++.|...+.+++ .
T Consensus 32 ~~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~Vl-VHGggp~i~~~l~--~---------------------- 86 (271)
T cd04236 32 NDWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLV-VMGLSAPDGTNMS--D---------------------- 86 (271)
T ss_pred CCCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEE-EeCCChHHhhhhc--C----------------------
Confidence 356789999999999999888888888775432 446554 4455553333321 0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC
Q 016545 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (387)
Q Consensus 155 h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~ 234 (387)
... .....++ . ..|..|+. .|++.|++|+++.+.+ .+++.+
T Consensus 87 ---------~~~-------------------------~~~~~v~--~-~~n~~Lv~-~L~~~G~~A~gl~g~~-~~i~a~ 127 (271)
T cd04236 87 ---------LEL-------------------------QAARSRL--V-KDCKTLVE-ALQANSAAAHPLFSGE-SVLQAE 127 (271)
T ss_pred ---------Ccc-------------------------hheehhH--H-HHHHHHHH-HHHhCCCCeeeecCcc-ceEEEE
Confidence 000 0011121 2 45666554 6889999999998875 366533
Q ss_pred ---CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+++. +++...+.+.++.. ++.+.|||+++ +|.+ .+|+..+++ +|..|+.||.+|+|++++++||++
T Consensus 128 ~~~d~g~vG~V~~Vd~~~I~~l-----L~~g~IPVisp-lg~~-~~G~~~NiN---aD~~A~~lA~aL~A~KLIfltd~~ 197 (271)
T cd04236 128 EPEPGASKGPSVSVDTELLQWC-----LGSGHIPLVCP-IGET-SSGRSVSLD---SSEVTTAIAKALQPIKVIFLNRSG 197 (271)
T ss_pred EcccCCccceEEEECHHHHHHH-----HhCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 2222 45555566555543 46789999999 8888 589999999 999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCH-HHHHHHHHcCCccccccc-ccchhHHHHH---HhcceEEEeeCCcc-ccccccCCCCc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTF-DEAAELAYFGAQVNISLI-VNDDEAEQCV---RALHETFFESDLAN-LDCVCGSENNS 384 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy-~EA~eLa~~GakVl~~~~-v~~~~~~~~~---ra~i~~~i~~~~~~-~~~~~g~~~g~ 384 (387)
|||+. +.++|++|+. +|+.+|...| ++..+| +..++.+.|+ .+..++.|++.... .++.+-+..||
T Consensus 198 GV~~~------~g~lI~~l~~~~e~~~li~~g--~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~~~~ll~elft~~g~GT 269 (271)
T cd04236 198 GLRDQ------KHKVLPQVHLPADLPSLSDAE--WLSETEQNRIQDIATLLNALPSMSSAVITSAETLLTELFSHKGSGT 269 (271)
T ss_pred ceECC------CCCCccccCcHHHHHHHHhCC--EEcCCeeechHHHHHHHHhcccCCeEEEeChHHHHHHHhccCCCCC
Confidence 99973 3678999995 9999999877 555554 2246666654 44566788773221 45554444565
Q ss_pred c
Q 016545 385 S 385 (387)
Q Consensus 385 ~ 385 (387)
.
T Consensus 270 ~ 270 (271)
T cd04236 270 L 270 (271)
T ss_pred c
Confidence 3
No 70
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.65 E-value=1.2e-15 Score=151.02 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=89.0
Q ss_pred cccCCCcEEEEcCCc--cccCCCCceeeeC-CCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 256 DWITDLAIPIVTGFL--GKAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfi--g~~~~~G~~ttLg-RGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
.+++.+.|||++|.- +.-..++.+.+.. =+.+|..|+.+|.+|+|+.++++|||||||++|| .|++++|++++++
T Consensus 180 ~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~~i~~~ 257 (314)
T PRK12353 180 TLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLDEVTVS 257 (314)
T ss_pred HHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECcCcCHH
Confidence 445778999999862 2211122222200 1338999999999999999999999999999766 3899999999999
Q ss_pred HHHHHHHcCCccccccccc-chhHHHHH--HhcceEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGAQVNISLIVN-DDEAEQCV--RALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~GakVl~~~~v~-~~~~~~~~--ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.++...| ..-..+|.. ..++..+. ++.++++|.+.....+++.|+ .||.+
T Consensus 258 e~~~~~~~~-~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i 312 (314)
T PRK12353 258 EAEKYIEEG-QFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVI 312 (314)
T ss_pred HHHHHHhcC-CcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEe
Confidence 999998643 222233422 23343333 678999999843347788888 79865
No 71
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.63 E-value=9.1e-15 Score=150.73 Aligned_cols=239 Identities=18% Similarity=0.212 Sum_probs=151.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
++.|.|+||+.+.+.+ ++++++-|.... ...++|+|++.|..-+++++.
T Consensus 26 ~~~VIk~GG~~l~~~~-~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~----------------------------- 75 (441)
T PRK05279 26 KTFVIMLGGEAIAHGN-FSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAA----------------------------- 75 (441)
T ss_pred CEEEEEECchhccChh-HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH-----------------------------
Confidence 5899999999997753 456666555432 234567777777766655531
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEeccccee-----eEee
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIG-----FITT 233 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~-----iit~ 233 (387)
+++.+ ++.+|+++ .++.+.+.+ +++| .+|..|.+ .|+ .|++++++.+..+. ++..
T Consensus 76 --~g~~~-----------~~~~G~Rv---T~~~~l~~~~~~~g-~v~~~l~~-~l~-~g~~a~~~~~~~~~~~~~~~~~~ 136 (441)
T PRK05279 76 --RGIEP-----------RYHKGLRV---TDAAALECVKQAAG-ELRLDIEA-RLS-MGLPNTPMAGAHIRVVSGNFVTA 136 (441)
T ss_pred --cCCCc-----------eecCCccc---CCHHHHHHHHHHHH-HHHHHHHH-HHh-ccCCCCcccCCcceEeeccEEEE
Confidence 22232 23334444 234444444 3456 67888654 564 49998886554331 1211
Q ss_pred C--------CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEE
Q 016545 234 D--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (387)
Q Consensus 234 ~--------~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~ 304 (387)
. +++. +++...+.+.++. +++.+.|||++ .++.+ ++|+..+++ +|..|+.||.+|+|+++.
T Consensus 137 ~~~~~~~~~~~g~~G~v~~v~~~~i~~-----ll~~g~ipV~~-~i~~~-~~g~~~ni~---~D~~a~~lA~~l~a~~lv 206 (441)
T PRK05279 137 RPLGVDDGVDYQHTGEVRRIDAEAIRR-----QLDSGAIVLLS-PLGYS-PTGESFNLT---MEEVATQVAIALKADKLI 206 (441)
T ss_pred EECCCCCCccccceeeEEEEeHHHHHH-----HHHCCCeEEEC-CceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 1 2221 3343334444443 34668899995 58887 489999999 999999999999999999
Q ss_pred EeecCCcccccCCCCCCCCccccccCHHHHHHHHH-cCCcccccccccchhHHHHHHh---cc-eEEEeeCCcc---ccc
Q 016545 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-FGAQVNISLIVNDDEAEQCVRA---LH-ETFFESDLAN---LDC 376 (387)
Q Consensus 305 i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~-~GakVl~~~~v~~~~~~~~~ra---~i-~~~i~~~~~~---~~~ 376 (387)
|.|||||||+. ++++|++++.+|+.++.. ++...+..+| .++.+.|.++ .. ++.|.+...| ...
T Consensus 207 ~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM--~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~ 278 (441)
T PRK05279 207 FFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGT--ARFLRAAVKACRGGVRRSHLISYAEDGALLQE 278 (441)
T ss_pred EEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccH--HHHHHHHHHHHHcCCCEEEEecCCCCcHHHHH
Confidence 99999999952 578999999999999876 2111334445 4666665443 45 7778887555 332
Q ss_pred cccC-CCCccC
Q 016545 377 VCGS-ENNSSL 386 (387)
Q Consensus 377 ~~g~-~~g~~~ 386 (387)
+.+. ..||.+
T Consensus 279 l~~~~g~GT~i 289 (441)
T PRK05279 279 LFTRDGIGTMI 289 (441)
T ss_pred HhcCCCCceEE
Confidence 3333 366654
No 72
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.63 E-value=4.4e-15 Score=146.99 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=86.5
Q ss_pred hhcccCCCcEEEEcC----CccccC---CCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccc
Q 016545 254 HGDWITDLAIPIVTG----FLGKAW---RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPV 326 (387)
Q Consensus 254 ~~~l~~~~~IpVv~G----fig~~~---~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I 326 (387)
+..+++.+.|+|.+| .++.+. ..|...+++ .|++|+.+|.+|+|++++|+|||+|||.++|+ |++++|
T Consensus 179 I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nIn---aD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~li 253 (316)
T PRK12352 179 IKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVID---KDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQAL 253 (316)
T ss_pred HHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeec---HHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcccc
Confidence 333456788844431 122221 123344466 99999999999999999999999999988765 788999
Q ss_pred cccCHHHHHHHHHcCCcccc-cccccchhHHH----HHHhcceEEEeeCCccccccccCCCCccC
Q 016545 327 PYLTFDEAAELAYFGAQVNI-SLIVNDDEAEQ----CVRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 327 ~~Lsy~EA~eLa~~GakVl~-~~~v~~~~~~~----~~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
++++.+|+.++...| .+. ..| .++... +.+.+.+++|.+.....++++|+ .||.+
T Consensus 254 ~~lt~~e~~~li~~g--~i~~GgM--~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~-~GT~I 313 (316)
T PRK12352 254 DRVDIATMTRYMQEG--HFPPGSM--LPKIIASLTFLEQGGKEVIITTPECLPAALRGE-TGTHI 313 (316)
T ss_pred cccCHHHHHHHHhcC--CcCCCCC--HHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCC-CCeEE
Confidence 999999999999766 222 233 344443 45557788998754448888887 78865
No 73
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.58 E-value=4.9e-14 Score=131.53 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=99.5
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCc
Q 016545 191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFL 270 (387)
Q Consensus 191 ~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfi 270 (387)
....|++..++-.+|+.+++..+...+ ..+...+.+. +..+.|||+..+-
T Consensus 51 ~~~ad~mgilat~~na~~l~~~~~~~~-------------------------~~~~~~~~~~-----~~~g~ipV~~P~~ 100 (203)
T cd04240 51 DAAAHWMAILAMEQYGYLLADLEPRLV-------------------------ARTLAELTDV-----LERGKIAILLPYR 100 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCccc-------------------------cCCHHHHHHH-----HHCCCcEEEeCch
Confidence 367788888888999988753221111 0011223332 2457899997642
Q ss_pred c---ccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCccccc
Q 016545 271 G---KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNIS 347 (387)
Q Consensus 271 g---~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~ 347 (387)
- .+ ..++..++. +|..|+.+|..|+|+.+.+.|||||||++| ++++++++++|+.+ ..++.
T Consensus 101 ~~~~~~-~~~~~~~~t---tD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~-----~~~id- 164 (203)
T cd04240 101 LLLDTD-PLPHSWEVT---SDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG-----ETSVD- 164 (203)
T ss_pred hhcccC-CCCcccccC---HHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC-----CCeeh-
Confidence 1 01 123334455 999999999999999999999999999865 89999999988753 22332
Q ss_pred ccccchhHHHHHHhcceEEEeeCCcc---ccccccC-CCCcc
Q 016545 348 LIVNDDEAEQCVRALHETFFESDLAN---LDCVCGS-ENNSS 385 (387)
Q Consensus 348 ~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~-~~g~~ 385 (387)
...++-+.+..++++|.+...+ .+.+.|+ .+||.
T Consensus 165 ----~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~ 202 (203)
T cd04240 165 ----PAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTR 202 (203)
T ss_pred ----hhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCC
Confidence 1234557888899999998765 6778888 68885
No 74
>PLN02825 amino-acid N-acetyltransferase
Probab=99.55 E-value=9.2e-14 Score=145.53 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=141.5
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
..+.|.||||+.+.++ .+.+++..|.... -.-++|+|++.+...|++++.
T Consensus 17 gktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~---------------------------- 67 (515)
T PLN02825 17 GSTFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAE---------------------------- 67 (515)
T ss_pred CCEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHH----------------------------
Confidence 3678999999999887 6777777665432 234466777777766666542
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHH--------HHHHcCCCe----EEeccc
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAA--------YLNKIGVKA----RQYDAF 226 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~--------~L~~~Gi~A----~~ld~~ 226 (387)
+++++ ++.+|++++ ++.+.+.++...-.++..|.+. .|++.|+++ ..+...
T Consensus 68 ---~gi~~-----------~f~~G~RVT---d~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~ 130 (515)
T PLN02825 68 ---RGREP-----------KYVGAYRIT---DSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVA 130 (515)
T ss_pred ---cCCCc-----------eeeCCcccC---CHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEec
Confidence 22332 233444443 3344444443444557776654 479999999 788888
Q ss_pred ceeeEeeC--------CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHH
Q 016545 227 DIGFITTD--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (387)
Q Consensus 227 d~~iit~~--------~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~a 297 (387)
+..+++.. +|+. ++|..++.+.|+.. ++.+.|||++. +|.+ ++|++.|++ +|..|+.+|.+
T Consensus 131 ~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~-----L~~g~Ipvisp-lg~s-~~Ge~~Nin---aD~vA~avA~a 200 (515)
T PLN02825 131 SGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKER-----LDSNCIVLLSN-LGYS-SSGEVLNCN---TYEVATACALA 200 (515)
T ss_pred cCcEEEEEECCCCcCccccceeeEEEEcHHHHHHH-----HhCCCeEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHH
Confidence 87788774 3333 45555566555543 46789999997 8998 599999999 99999999999
Q ss_pred cCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc
Q 016545 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (387)
Q Consensus 298 L~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~ 340 (387)
|+|++++++|||+ +++. +.++|++|+.+|+.+|...
T Consensus 201 L~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~ 236 (515)
T PLN02825 201 IGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRK 236 (515)
T ss_pred cCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHh
Confidence 9999999999987 5542 4678999999999999864
No 75
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.55 E-value=8.9e-14 Score=137.15 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=86.4
Q ss_pred cccCCCcEEEEcCCccccC--CCCceeeeC-CCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 256 DWITDLAIPIVTGFLGKAW--RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfig~~~--~~G~~ttLg-RGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
.+++.+.|||+.|.-|... .+|...+.. -...|++|++||..|+|+.+.++|||||||+.+| .|++++|++++++
T Consensus 176 ~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~ 253 (308)
T cd04235 176 TLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVE 253 (308)
T ss_pred HHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHH
Confidence 3457789999987633211 122222110 1125999999999999999999999999999654 3899999999999
Q ss_pred HHHHHHHcC---CcccccccccchhHHH-HHHhcceEEEeeCCccccccccCCCCccCC
Q 016545 333 EAAELAYFG---AQVNISLIVNDDEAEQ-CVRALHETFFESDLANLDCVCGSENNSSLV 387 (387)
Q Consensus 333 EA~eLa~~G---akVl~~~~v~~~~~~~-~~ra~i~~~i~~~~~~~~~~~g~~~g~~~~ 387 (387)
|+.++...| +--|+|++ .++.. +.+...+++|.+.....+++.|+ .||.++
T Consensus 254 e~~~l~~~g~~~tGGM~pKv---~aA~~~a~~gg~~v~I~~~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 254 ELEKYIEEGQFAPGSMGPKV---EAAIRFVESGGKKAIITSLENAEAALEGK-AGTVIV 308 (308)
T ss_pred HHHHHHhcCccccCCcHHHH---HHHHHHHHhCCCeEEECCHHHHHHHHCCC-CCeEEC
Confidence 999998643 22344332 23333 34456788887743346778887 688653
No 76
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.55 E-value=3.5e-13 Score=127.33 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
+|+..+. ..|.+.|++++...|..+ ...+ +++.....+.+.+. ++.+.|||+.|.+-.+. ++.+..+
T Consensus 81 ~L~~~V~-~~l~~~Gv~av~~~P~s~-~~~~-----gr~~~~~l~~i~~~-----l~~gfvPvl~GDVv~d~-~~g~~Ii 147 (252)
T COG1608 81 ELNSIVV-DALLDAGVRAVSVVPISF-STFN-----GRILYTYLEAIKDA-----LEKGFVPVLYGDVVPDD-DNGYEII 147 (252)
T ss_pred HHHHHHH-HHHHhcCCccccccCcce-eecC-----CceeechHHHHHHH-----HHcCCEeeeecceEEcC-CCceEEE
Confidence 4565544 568899999987666654 1212 22221112333332 36789999999998874 4456667
Q ss_pred CCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCccccccccc-chhHHHHHHh
Q 016545 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVN-DDEAEQCVRA 361 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~-~~~~~~~~ra 361 (387)
. .|-.+..||..|+++++.|.|||||||+.||.++|+++.+..+...++ +..-+..=...+|.. -.++..+-|.
T Consensus 148 S---GDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~--~~gs~~~DVTGGi~~Kl~~~~~~~~~ 222 (252)
T COG1608 148 S---GDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA--LGGSGGTDVTGGIAKKLEALLEIARY 222 (252)
T ss_pred e---ccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh--hcCcCcccchhhHHHHHHHHHHHHhc
Confidence 6 899999999999999999999999999999999999999887665422 222221112444421 1223334444
Q ss_pred cceEEEeeCCcc---ccccccCCCCccC
Q 016545 362 LHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 362 ~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
.-++.|.+...+ -+.+.|+.+||..
T Consensus 223 ~~~vyi~ng~~~~ni~~~l~G~~vGT~I 250 (252)
T COG1608 223 GKEVYIFNGNKPENIYRALRGENVGTRI 250 (252)
T ss_pred CceEEEECCCCHHHHHHHhcCCCCceEe
Confidence 556888888765 7788899999864
No 77
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.54 E-value=1.7e-13 Score=135.49 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=85.4
Q ss_pred cccCCCcEEEEcCCcc--ccCCCCceeee-CCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 256 DWITDLAIPIVTGFLG--KAWRTCAITTL-GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfig--~~~~~G~~ttL-gRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
.+++.+.|+|.+|.-| .-..+|.+.+. --+-.|..|+++|.+|+|+.++++|||||||++ | ..|++++|++++++
T Consensus 177 ~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i~~it~~ 254 (310)
T TIGR00746 177 TLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKALREVTVE 254 (310)
T ss_pred HHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCCcCcCHH
Confidence 3456677766665422 21123332210 013499999999999999999999999999996 4 35899999999999
Q ss_pred HHHHHHHcCCccccccccc-chhH-HHHHHhcceEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGAQVNISLIVN-DDEA-EQCVRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~GakVl~~~~v~-~~~~-~~~~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.++...| ..-..+|.. ..++ +.+.+...+++|.+-....+++.|+ .||..
T Consensus 255 e~~~~~~~g-~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I 308 (310)
T TIGR00746 255 ELEDYYKAG-HFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRV 308 (310)
T ss_pred HHHHHHhcC-CcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEE
Confidence 999998533 111122311 2344 3345567899998854448888898 89864
No 78
>PRK12686 carbamate kinase; Reviewed
Probab=99.49 E-value=1.1e-12 Score=129.49 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=89.2
Q ss_pred cccCCCcEEEEcCCcc--ccCCCCceeeeC-CCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 256 DWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfig--~~~~~G~~ttLg-RGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
.|++.+.|||.+|.-| .-.+++...++. =+-.|..|+.||.+|+|+.+.|+|||||||+ ||+ .|++++|++++.+
T Consensus 178 ~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I~~I~~~ 255 (312)
T PRK12686 178 TLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKLDDITVA 255 (312)
T ss_pred HHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeECCccCHH
Confidence 4457789999987622 211234333321 1237999999999999999999999999999 565 4899999999999
Q ss_pred HHHHHHHcCCcccccccccchhHHHHHHh-----cceEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGAQVNISLIVNDDEAEQCVRA-----LHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~GakVl~~~~v~~~~~~~~~ra-----~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.++...|- .-..+| .++.+.|.++ ..+++|.+.....+++.|+ .||.+
T Consensus 256 e~~~li~~g~-~~tGGM--~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~-~GT~I 310 (312)
T PRK12686 256 EAKQYIAEGQ-FAPGSM--LPKVEAAIDFVESGEGKKAIITSLEQAKEALAGN-AGTHI 310 (312)
T ss_pred HHHHHhhCCC-ccCCCc--HHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCC-CCeEE
Confidence 9999987552 212334 4665655433 4688888754447888887 68864
No 79
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.40 E-value=1.4e-11 Score=121.67 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=87.5
Q ss_pred cccCCCcEEEEcCCccc--cCCCCceeeeC-CCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 256 DWITDLAIPIVTGFLGK--AWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfig~--~~~~G~~ttLg-RGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
.+++.+.|||++|.-|. -..+|++.++. -...|.+|+.||.+|+|+.+.|+|||||||++ |+ .|++++|++++++
T Consensus 180 ~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It~~ 257 (313)
T PRK12454 180 ALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVTVE 257 (313)
T ss_pred HHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccCHH
Confidence 34577899999976322 11244444332 01269999999999999999999999999986 44 4899999999999
Q ss_pred HHHHHHHcCCcccccccccchhHHHH----HHhcceEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGAQVNISLIVNDDEAEQC----VRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~GakVl~~~~v~~~~~~~~----~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.++...|. .-...| .++.+.+ .+...+++|.+.....+++.|+ .||.+
T Consensus 258 e~~~~i~~g~-~~~GgM--~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~-~GT~I 311 (313)
T PRK12454 258 EAKKYYEEGH-FKAGSM--GPKILAAIRFVENGGKRAIIASLEKAVEALEGK-TGTRI 311 (313)
T ss_pred HHHHHHhcCC-cCCCCh--HHHHHHHHHHHHcCCCeEEECchHHHHHHHCCC-CCeEe
Confidence 9999886542 111223 3444443 4456888888654447778887 68865
No 80
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.39 E-value=4.2e-12 Score=129.62 Aligned_cols=178 Identities=20% Similarity=0.265 Sum_probs=118.8
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 79 KQLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
...+.|.|+||+.+.+. +..+++-|.... -+..+|||++.|...|++++.
T Consensus 35 ~~~~~VIKiGG~~l~~~--~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~--------------------------- 85 (398)
T PRK04531 35 AERFAVIKVGGAVLRDD--LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDA--------------------------- 85 (398)
T ss_pred CCcEEEEEEChHHhhcC--HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHH---------------------------
Confidence 34889999999999753 455655554322 233456777777776666542
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (387)
+++++ ++++|++++ ++.+.+.+ ..++ ..|..|+.+
T Consensus 86 ----~gie~-----------~~v~G~RVT---d~~tl~vv~~~l~-~vn~~lv~~------------------------- 121 (398)
T PRK04531 86 ----AGIEK-----------ETVNGLRVT---SPEALAIVRKVFQ-RSNLDLVEA------------------------- 121 (398)
T ss_pred ----cCCCc-----------EEECCEecC---CHHHHHHHHHHHH-HHHHHHHHH-------------------------
Confidence 33333 233444443 34555554 3445 556655544
Q ss_pred CCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccC
Q 016545 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (387)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taD 316 (387)
+++. ++.+.|||+++ +|.+ ++|++.+++ +|..|+.||.+|+|+++++.|||+|||+.
T Consensus 122 ------------I~~~-----L~~g~IPVlsp-lg~~-~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~- 178 (398)
T PRK04531 122 ------------VESS-----LRAGSIPVIAS-LGET-PSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDA- 178 (398)
T ss_pred ------------HHHH-----HHCCCEEEEeC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC-
Confidence 1222 36689999987 6766 589999999 99999999999999999999999999974
Q ss_pred CCCCCCCccccccCH-HHHHHHHHcCCcccccccccchhHHHHHHh
Q 016545 317 PNIHPHAKPVPYLTF-DEAAELAYFGAQVNISLIVNDDEAEQCVRA 361 (387)
Q Consensus 317 Pr~v~~Ak~I~~Lsy-~EA~eLa~~GakVl~~~~v~~~~~~~~~ra 361 (387)
+.++|++|+. +|...|...| .+.++| .++.+.|.++
T Consensus 179 -----~g~~i~~i~~~~e~~~l~~~~--~vtgGM--~~KL~~a~~a 215 (398)
T PRK04531 179 -----DGKLISSINLSTEYDHLMQQP--WINGGM--KLKLEQIKEL 215 (398)
T ss_pred -----CCCCcccCCHHHHHHHHHhcC--CCCccH--HHHHHHHHHH
Confidence 3678999996 6777776543 345555 3555555444
No 81
>PRK12354 carbamate kinase; Reviewed
Probab=99.37 E-value=9.1e-12 Score=122.72 Aligned_cols=121 Identities=18% Similarity=0.106 Sum_probs=82.1
Q ss_pred cccCCCcEEEEcCCcccc--C-CCCceeeeC-CCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCH
Q 016545 256 DWITDLAIPIVTGFLGKA--W-RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfig~~--~-~~G~~ttLg-RGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy 331 (387)
.|++.+.|||.+|.=|.. . .++...... -...|.+|+.||.+|+|+.+.|+|||||||++++ .|++++|+++++
T Consensus 170 ~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~it~ 247 (307)
T PRK12354 170 WLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQATP 247 (307)
T ss_pred HHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCCCCH
Confidence 345678887776543321 1 123222211 1348999999999999999999999999999754 489999999999
Q ss_pred HHHHHHHHcCCcccccccccchhHHHH----HHhcceEEEeeCCccccccccCCCCccC
Q 016545 332 DEAAELAYFGAQVNISLIVNDDEAEQC----VRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 332 ~EA~eLa~~GakVl~~~~v~~~~~~~~----~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
+|+.++ .|+.--|. ++.+.+ .+...+++|.+.....+++.|+ .||.+
T Consensus 248 ~e~~~~-~f~~GgM~------pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~-~GT~I 298 (307)
T PRK12354 248 DELREL-GFAAGSMG------PKVEAACEFVRATGKIAGIGSLEDIQAILAGE-AGTRI 298 (307)
T ss_pred HHHHhh-CCCcCChH------HHHHHHHHHHHhCCCEEEECCHHHHHHHHCCC-CceEE
Confidence 999988 34322233 444444 3446688886544347778886 58764
No 82
>PRK09411 carbamate kinase; Reviewed
Probab=99.26 E-value=1.8e-10 Score=112.86 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=84.8
Q ss_pred ccCCCcEEEEcCC--cc--ccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 257 WITDLAIPIVTGF--LG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 257 l~~~~~IpVv~Gf--ig--~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
|++.+.|||.+|. ++ .+ .+|...+++ .|.+|+.||.+|+|+.+.|+|||||||..++ .|++++|++++.+
T Consensus 172 Ll~~G~IVI~~gGGGIPV~~~-~~G~e~vID---kD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~~ 245 (297)
T PRK09411 172 LLKEGHVVICSGGGGVPVTED-GAGSEAVID---KDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATPD 245 (297)
T ss_pred HHHCCCEEEecCCCCCCeEEc-CCCeEEecC---HHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCHH
Confidence 3467888887643 22 22 235555666 8999999999999999999999999998643 5789999999999
Q ss_pred HHHHHHHcCCcccccccccchhH-HHHHHhcceEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGAQVNISLIVNDDEA-EQCVRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~GakVl~~~~v~~~~~-~~~~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.++..- .--|.|++ .++ +.+.+...+++|.+-....+++.|+ .||.+
T Consensus 246 e~~~~~~~-~GgM~pKV---eAA~~~v~~~g~~a~I~~l~~~~~~l~G~-~GT~I 295 (297)
T PRK09411 246 ELAPFAKA-DGAMGPKV---TAVSGYVRSRGKPAWIGALSRIEETLAGE-AGTCI 295 (297)
T ss_pred HHHHhccC-CCCcHHHH---HHHHHHHHhCCCeEEECChhHHHHHHCCC-CCeEE
Confidence 99877652 11244443 222 2335557888887644447888887 58864
No 83
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.03 E-value=5.7e-09 Score=98.52 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=108.3
Q ss_pred HHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCc---
Q 016545 210 AAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG--- 286 (387)
Q Consensus 210 ~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGG--- 286 (387)
...+.++|+....+ ++|..++.+. ..+.+++..+. .|+.-+.|||+----+.. +...-+|-
T Consensus 105 e~lF~Qy~~~iAQv------LvT~~Di~d~----~~r~Nl~~Ti~-eLL~m~viPIvNeNDavs-----~~~~~~~D~~d 168 (285)
T KOG1154|consen 105 ETLFTQYGITIAQV------LVTRNDILDE----QQRKNLQNTIS-ELLSMNVIPIVNENDAVS-----PREIPFGDSSD 168 (285)
T ss_pred HHHHHHhccchhee------eecCcchhhH----HHHHHHHHHHH-HHHhCCceeeecCCCccC-----CcccccCCCCc
Confidence 34578899987665 6666555432 23445555543 345778999983211111 11122333
Q ss_pred chhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCC--cccccccccchhHH---HHHHh
Q 016545 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVNISLIVNDDEAE---QCVRA 361 (387)
Q Consensus 287 SD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~Ga--kVl~~~~v~~~~~~---~~~ra 361 (387)
.|..|+++|..++||-++++|||||+|| .|.-...+++|+..+..+..-=..||. +|-..+| ..+.. .+..+
T Consensus 169 NDsLsA~laaei~ADlLilLsDVdglYt-~PPd~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM--~tKv~AA~~A~~~ 245 (285)
T KOG1154|consen 169 NDSLAAILAAEIKADLLILLSDVDGLYT-GPPDADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGM--ETKVKAAVNALNA 245 (285)
T ss_pred ccHHHHHHHHHhccCEEEEEeccccccc-CCCCCCcceeeeeeccCCCCCccccCccCccCcCcc--hhhHHHHHHHhcC
Confidence 7999999999999999999999999999 553334678888888777664445655 4555555 34433 46888
Q ss_pred cceEEEeeCCcc---ccccccCCCCccC
Q 016545 362 LHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 362 ~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
.++|+|+++..| -+++.|..+||.+
T Consensus 246 Gv~viI~~g~~p~~I~~iv~g~kvgt~f 273 (285)
T KOG1154|consen 246 GVSVIITNGDAPENITDIVEGKKVGTFF 273 (285)
T ss_pred CceEEEeCCCChHHHHHHHhhhhhhhhh
Confidence 999999999887 5899999999864
No 84
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.29 E-value=3.4e-05 Score=70.76 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=63.0
Q ss_pred chhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEE
Q 016545 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETF 366 (387)
Q Consensus 287 SD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~ 366 (387)
||..+..+|+.+++.++++.|||||||+.+| +++++++|+-.|..+ |-..+.|+. .+-...-.+...
T Consensus 118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~----~~kLv~eI~A~dl~~----~~t~vD~~~-----P~Ll~k~~m~~~ 184 (212)
T COG2054 118 SDSISVWIAAKAGATEVVKATDVDGIYEEDP----KGKLVREIRASDLKT----GETSVDPYL-----PKLLVKYKMNCR 184 (212)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCcccccCC----cchhhhhhhHhhccc----Ccccccchh-----hHHHHHcCCceE
Confidence 9999999999999999999999999999886 458899998777654 444554332 223455566677
Q ss_pred EeeCCcc---ccccccCCC
Q 016545 367 FESDLAN---LDCVCGSEN 382 (387)
Q Consensus 367 i~~~~~~---~~~~~g~~~ 382 (387)
|.|+..| +.+++|+++
T Consensus 185 Vvng~~pervi~~lrGk~~ 203 (212)
T COG2054 185 VVNGKEPERVILALRGKEV 203 (212)
T ss_pred EECCCCHHHHHHHHhcccc
Confidence 7788776 777777653
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=97.99 E-value=4.2e-05 Score=74.56 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=79.4
Q ss_pred hhcccCCCcEEEEcCCccccC-CC-----CceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCcccc
Q 016545 254 HGDWITDLAIPIVTGFLGKAW-RT-----CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVP 327 (387)
Q Consensus 254 ~~~l~~~~~IpVv~Gfig~~~-~~-----G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~ 327 (387)
++.|++++.++|..|.=|... ++ |--..+. -|+++++||..++||.+.|+||||+||-.--+ |+.+.|.
T Consensus 177 Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVID---KDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p~q~~L~ 251 (312)
T COG0549 177 IKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVID---KDLASALLAEQIDADLLIILTDVDAVYVNFGK--PNQQALD 251 (312)
T ss_pred HHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEc---cHHHHHHHHHHhcCCEEEEEeccchheecCCC--ccchhhc
Confidence 334456777777765322210 00 1111123 69999999999999999999999999976533 7899999
Q ss_pred ccCHHHHHHHHHcCCcccccccccchhHHHHH----HhcceEEEeeCCccccccccCCCCccC
Q 016545 328 YLTFDEAAELAYFGAQVNISLIVNDDEAEQCV----RALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 328 ~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~----ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
+++.+|+.++..-|.-- .-++-|+..+|+ +-.=+.+|++=....+++.|+. ||-.
T Consensus 252 ~v~~~e~~~yl~eg~Fa---~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~-GT~I 310 (312)
T COG0549 252 RVTVDEMEKYLAEGQFA---AGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKA-GTVI 310 (312)
T ss_pred ccCHHHHHHHHhcCCCC---CCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCC-CcEe
Confidence 99999999988655321 112356666653 3344445544333366666655 6643
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.02 Score=59.96 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCCeEEeccccee--eEeeC--------CCCC-ceecccchHHHHHHHhhcccCCCcEEEEc
Q 016545 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIG--FITTD--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVT 267 (387)
Q Consensus 199 s~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~--iit~~--------~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~ 267 (387)
-+||. +..++. .|++.|..+++.+.-..- +++.+ +|+. .++...+.+++.. +++.+.+|++.
T Consensus 170 ~~~E~-n~~lv~-nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~-----l~~~G~mp~L~ 242 (520)
T KOG2436|consen 170 VSLEA-NLNLVI-NLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRH-----LLDAGSMPLLR 242 (520)
T ss_pred chhhh-hhHHHH-HHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhh-----hhhCCCchheh
Confidence 44666 444554 588888888877655321 23332 2333 2344445555543 34668899988
Q ss_pred CCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc
Q 016545 268 GFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (387)
Q Consensus 268 Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~ 340 (387)
- .+.+ ..|+++|.+ +|..|..+|.+|+++++...+|+ |..-. .+.+.+..|..+|...+-..
T Consensus 243 s-la~T-aSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~l~k 304 (520)
T KOG2436|consen 243 S-LAAT-ASGQVLNVN---ADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAGLRK 304 (520)
T ss_pred h-hccc-CccceEEee---HHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhhhhh
Confidence 6 7777 589999999 99999999999999999999998 44422 34556788888887776654
No 87
>PRK03670 competence damage-inducible protein A; Provisional
Probab=76.79 E-value=10 Score=36.76 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+..++..|.+.|++..... ++. | +.+.|.+.+...+.....+.|++|.+|.+.
T Consensus 20 tN~~~la~~L~~~G~~v~~~~-----iV~-D----------d~~~I~~~l~~a~~~~~DlVIttGGlGpt~--------- 74 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRIT-----TVG-D----------DVEEIKSVVLEILSRKPEVLVISGGLGPTH--------- 74 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEE-----EcC-C----------CHHHHHHHHHHHhhCCCCEEEECCCccCCC---------
Confidence 367778889999999865531 222 2 124455555432222357999999888763
Q ss_pred CCcchhHHHHHHHHcCCc
Q 016545 284 RGGSDLTATTIGKALGLQ 301 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~ 301 (387)
-|+|.-.+|.++|-+
T Consensus 75 ---dD~T~eava~a~g~~ 89 (252)
T PRK03670 75 ---DDVTMLAVAEALGRE 89 (252)
T ss_pred ---CCchHHHHHHHhCCC
Confidence 689999999999853
No 88
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=74.69 E-value=11 Score=32.68 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
--|+.++.++|++.|+...... ++-| +.+.+.+.+.. +.++..+.|++|..|.+.
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~l~~-~~~~~D~VittGG~g~~~-------- 70 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYG-----IVPD-----------DPDAIKEALRR-ALDRADLVITTGGTGPGP-------- 70 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEE-----EEES-----------SHHHHHHHHHH-HHHTTSEEEEESSSSSST--------
T ss_pred EhHHHHHHHHHHHcCCeeeEEE-----EECC-----------CHHHHHHHHHh-hhccCCEEEEcCCcCccc--------
Confidence 3477888999999998765541 2322 23556666643 345568999999777652
Q ss_pred CCCcchhHHHHHHHHcCC
Q 016545 283 GRGGSDLTATTIGKALGL 300 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~A 300 (387)
.|+|.-.++.+.+-
T Consensus 71 ----~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 71 ----DDVTPEALAEAGGR 84 (144)
T ss_dssp ----TCHHHHHHHHHSSE
T ss_pred ----CCcccHHHHHhcCc
Confidence 69999999888763
No 89
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=72.13 E-value=17 Score=35.59 Aligned_cols=69 Identities=29% Similarity=0.371 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+.-|+..|.+.|++..... +-++ +.+.|.+.+... .+...+.|++|.+|-+.
T Consensus 22 Na~~la~~L~~~G~~v~~~~-------~VgD---------~~~~I~~~l~~a-~~r~D~vI~tGGLGPT~---------- 74 (255)
T COG1058 22 NAAFLADELTELGVDLARIT-------TVGD---------NPDRIVEALREA-SERADVVITTGGLGPTH---------- 74 (255)
T ss_pred hHHHHHHHHHhcCceEEEEE-------ecCC---------CHHHHHHHHHHH-HhCCCEEEECCCcCCCc----------
Confidence 67778999999999876641 1111 224455555433 34478999999999763
Q ss_pred CcchhHHHHHHHHcCCce
Q 016545 285 GGSDLTATTIGKALGLQE 302 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~ 302 (387)
-|.|+=.+|++||-+.
T Consensus 75 --DDiT~e~vAka~g~~l 90 (255)
T COG1058 75 --DDLTAEAVAKALGRPL 90 (255)
T ss_pred --cHhHHHHHHHHhCCCc
Confidence 5999999999999543
No 90
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=71.08 E-value=22 Score=32.28 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+..++..|.+.|++..... ++ .| +.+.|.+.+... .+...+.|++|.+|.+.
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~-----~v-~D----------d~~~I~~~l~~~-~~~~dlVIttGG~G~t~--------- 72 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVT-----VV-GD----------DEDRIAEALRRA-SERADLVITTGGLGPTH--------- 72 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----Ee-CC----------CHHHHHHHHHHH-HhCCCEEEECCCCCCCC---------
Confidence 367778889999998865531 22 22 224455555432 34567999999777652
Q ss_pred CCcchhHHHHHHHHcCCc
Q 016545 284 RGGSDLTATTIGKALGLQ 301 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~ 301 (387)
-|+|--.++.+++-+
T Consensus 73 ---~D~t~ea~~~~~~~~ 87 (170)
T cd00885 73 ---DDLTREAVAKAFGRP 87 (170)
T ss_pred ---CChHHHHHHHHhCCC
Confidence 699999999999853
No 91
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=70.15 E-value=25 Score=30.77 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+.++.+.|++.|++..... ++.+ +.+.+.+.+.+ +.+...+.|++|..+.+.
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~l~~-~~~~~DliIttGG~g~g~--------- 80 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLG-----IVPD-----------DPEEIREILRK-AVDEADVVLTTGGTGVGP--------- 80 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEe-----ecCC-----------CHHHHHHHHHH-HHhCCCEEEECCCCCCCC---------
Confidence 366778888999998866541 2222 22445555543 334568999998666542
Q ss_pred CCcchhHHHHHHHHc
Q 016545 284 RGGSDLTATTIGKAL 298 (387)
Q Consensus 284 RGGSD~tAa~LA~aL 298 (387)
.|++...++.+.
T Consensus 81 ---~D~t~~ai~~~g 92 (144)
T TIGR00177 81 ---RDVTPEALEELG 92 (144)
T ss_pred ---CccHHHHHHHhC
Confidence 699999999876
No 92
>PRK01215 competence damage-inducible protein A; Provisional
Probab=60.97 E-value=32 Score=33.61 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+..++..|++.|++..... ++. |+ .+.|.+.+... .+...+.|++|.+|.+.
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~-----~v~-Dd----------~~~I~~~l~~a-~~~~DlVIttGG~g~t~--------- 76 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT-----VVM-DD----------IEEIVSAFREA-IDRADVVVSTGGLGPTY--------- 76 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeC-CC----------HHHHHHHHHHH-hcCCCEEEEeCCCcCCh---------
Confidence 467788899999999865531 222 21 24455555433 34568999999787662
Q ss_pred CCcchhHHHHHHHHcCCc
Q 016545 284 RGGSDLTATTIGKALGLQ 301 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~ 301 (387)
-|+|.-.++.+++-+
T Consensus 77 ---dD~t~eaia~~~g~~ 91 (264)
T PRK01215 77 ---DDKTNEGFAKALGVE 91 (264)
T ss_pred ---hhhHHHHHHHHhCCC
Confidence 699999999999854
No 93
>PRK03673 hypothetical protein; Provisional
Probab=60.10 E-value=37 Score=35.21 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+..++..|.+.|++..... .+ .| +.+.+.+.+... .....+.|++|.+|-+.
T Consensus 22 N~~~la~~L~~~G~~v~~~~-----~v-~D----------~~~~i~~~l~~a-~~~~DlVI~tGGlGpt~---------- 74 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRN-----TV-GD----------NLDALVAILRER-SQHADVLIVNGGLGPTS---------- 74 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----Ec-CC----------CHHHHHHHHHHH-hccCCEEEEcCCCCCCC----------
Confidence 77888899999999865531 12 12 234555555433 35568999999888652
Q ss_pred CcchhHHHHHHHHcCCc
Q 016545 285 GGSDLTATTIGKALGLQ 301 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~ 301 (387)
-|+|.-.+|.++|-.
T Consensus 75 --dD~t~~avA~a~g~~ 89 (396)
T PRK03673 75 --DDLSALAAATAAGEG 89 (396)
T ss_pred --cccHHHHHHHHcCCC
Confidence 699999999999954
No 94
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=59.28 E-value=36 Score=30.59 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcc-cCCCcEEEEcCCccccCCCCceee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW-ITDLAIPIVTGFLGKAWRTCAITT 281 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l-~~~~~IpVv~Gfig~~~~~G~~tt 281 (387)
--|+..++++|++.|.+...+ +++.| +.+.+++.+.+.+ .....+.|++|..+.+.
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~~~~~~~DlVIttGGtg~g~------- 77 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADR-----AIVKD-----------DIYQIRAQVSAWIADPDVQVILITGGTGFTG------- 77 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEE-----EEcCC-----------CHHHHHHHHHHHHhcCCCCEEEECCCcCCCC-------
Confidence 447777888999999876553 23322 2244555554322 13467999998777652
Q ss_pred eCCCcchhHHHHHHHHcC
Q 016545 282 LGRGGSDLTATTIGKALG 299 (387)
Q Consensus 282 LgRGGSD~tAa~LA~aL~ 299 (387)
-|++.-.++..++
T Consensus 78 -----~D~t~eal~~l~~ 90 (163)
T TIGR02667 78 -----RDVTPEALEPLFD 90 (163)
T ss_pred -----CCCcHHHHHHHHC
Confidence 6888888888875
No 95
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=57.70 E-value=45 Score=29.42 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC--CCcEEEEcCCccccCCCCceeee
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~--~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
|+.++.++|++.|.+.... +++.| +.+.+.+.+... .+ ...+.|++|..+.+.
T Consensus 21 n~~~l~~~l~~~G~~v~~~-----~~v~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~s~g~-------- 75 (152)
T cd00886 21 SGPALVELLEEAGHEVVAY-----EIVPD-----------DKDEIREALIEW-ADEDGVDLILTTGGTGLAP-------- 75 (152)
T ss_pred hHHHHHHHHHHcCCeeeeE-----EEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCcCCCC--------
Confidence 6677888999999875543 12222 224455555432 34 567999998777652
Q ss_pred CCCcchhHHHHHHHHcC
Q 016545 283 GRGGSDLTATTIGKALG 299 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~ 299 (387)
-|++...++..++
T Consensus 76 ----~D~t~~al~~~~~ 88 (152)
T cd00886 76 ----RDVTPEATRPLLD 88 (152)
T ss_pred ----CcCcHHHHHHHhC
Confidence 5999999988874
No 96
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=57.45 E-value=51 Score=28.29 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+.++.+.|++.|.+..... ++. | +.+.+++.+.+. +++..+.|++|..+.+.
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~-----~v~-D----------d~~~i~~~i~~~-~~~~DlvittGG~g~g~--------- 72 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAG-----VVP-D----------DADSIRAALIEA-SREADLVLTTGGTGVGR--------- 72 (133)
T ss_pred chHHHHHHHHHHCCCEEEEee-----ecC-C----------CHHHHHHHHHHH-HhcCCEEEECCCCCCCC---------
Confidence 367788889999997755431 221 1 234556655433 34578999998777652
Q ss_pred CCcchhHHHHHHHHc
Q 016545 284 RGGSDLTATTIGKAL 298 (387)
Q Consensus 284 RGGSD~tAa~LA~aL 298 (387)
-|++.-.+..+.
T Consensus 73 ---~D~t~~ai~~~g 84 (133)
T cd00758 73 ---RDVTPEALAELG 84 (133)
T ss_pred ---CcchHHHHHHhc
Confidence 699999988876
No 97
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=57.22 E-value=45 Score=28.50 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
--|..++.+.|++.|....... ++. | +.+.|.+.+.. +.+...+.|++|..+.+.
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~-----~v~-D----------d~~~I~~~l~~-~~~~~dliittGG~g~g~-------- 71 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-----IVP-D----------DKEAIKEALRE-ALERADLVITTGGTGPGP-------- 71 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEE-----EeC-C----------CHHHHHHHHHH-HHhCCCEEEEcCCCCCCC--------
Confidence 4477788889999998765531 222 1 12445555543 334567999988776542
Q ss_pred CCCcchhHHHHHHHHcCC
Q 016545 283 GRGGSDLTATTIGKALGL 300 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~A 300 (387)
.|++-..++.+++.
T Consensus 72 ----~D~t~~~l~~~~~~ 85 (135)
T smart00852 72 ----DDVTPEAVAEALGK 85 (135)
T ss_pred ----CcCcHHHHHHHhCC
Confidence 69999999998874
No 98
>PRK00549 competence damage-inducible protein A; Provisional
Probab=55.68 E-value=50 Score=34.31 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+..++..|++.|++..... ++. | +.+.|.+.+... .+...+.|++|.+|.+.
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~-----~v~-D----------d~~~I~~~l~~a-~~~~DlVItTGGlGpt~--------- 73 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQT-----VVG-D----------NPERLLSALEIA-EERSDLIITTGGLGPTK--------- 73 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeC-C----------CHHHHHHHHHHh-ccCCCEEEECCCCCCCC---------
Confidence 467788899999999876531 222 2 124455555432 35568999999888763
Q ss_pred CCcchhHHHHHHHHcCCc
Q 016545 284 RGGSDLTATTIGKALGLQ 301 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~ 301 (387)
-|+|.-.++.+++.+
T Consensus 74 ---dD~t~ea~a~~~g~~ 88 (414)
T PRK00549 74 ---DDLTKETVAKFLGRE 88 (414)
T ss_pred ---CccHHHHHHHHhCCC
Confidence 699999999998864
No 99
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=48.41 E-value=65 Score=33.56 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|...++++|++.|...+.+ +++.|+ .+.+++.+.+. ..+..+.|++|..... +
T Consensus 204 N~~~l~a~l~~~G~e~~~~-----giv~Dd-----------~~~l~~~i~~a-~~~~DviItsGG~SvG----~------ 256 (404)
T COG0303 204 NSYMLAALLERAGGEVVDL-----GIVPDD-----------PEALREAIEKA-LSEADVIITSGGVSVG----D------ 256 (404)
T ss_pred CHHHHHHHHHHcCCceeec-----cccCCC-----------HHHHHHHHHHh-hhcCCEEEEeCCccCc----c------
Confidence 6778889999999876554 233332 34555555443 2446799998854433 2
Q ss_pred CcchhHHHHHHHHcCCceEEEee
Q 016545 285 GGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~T 307 (387)
.|++-.++...+| ++.||.
T Consensus 257 --~D~v~~~l~~~lG--~v~~~g 275 (404)
T COG0303 257 --ADYVKAALERELG--EVLFHG 275 (404)
T ss_pred --hHhHHHHHHhcCC--cEEEEe
Confidence 7999999998888 888886
No 100
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=47.94 E-value=86 Score=32.68 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+..++..|++.|++..... ++ .| +.+.+.+.+... .+...+.|++|.+|.+.
T Consensus 21 N~~~l~~~L~~~G~~v~~~~-----~v-~D----------d~~~i~~~l~~a-~~~~DlVIttGGlgpt~---------- 73 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRT-----TV-GD----------NPERLKTIIRIA-SERADVLIFNGGLGPTS---------- 73 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEE-----Ee-CC----------CHHHHHHHHHHH-hcCCCEEEEcCCCCCCC----------
Confidence 66778889999999866531 22 22 224455555433 35568999999887663
Q ss_pred CcchhHHHHHHHHcCCc
Q 016545 285 GGSDLTATTIGKALGLQ 301 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~ 301 (387)
-|+|.-.++.++|-+
T Consensus 74 --dD~t~eava~~~g~~ 88 (413)
T TIGR00200 74 --DDLTAETIATAKGEP 88 (413)
T ss_pred --cccHHHHHHHHhCCC
Confidence 699999999987753
No 101
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=38.30 E-value=1.6e+02 Score=25.44 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCceeeeCCCcchhH-HHHHHHHcCCceEEEeecCCcccccCCCCCCCCc--cccccCHHHHHHHH
Q 016545 276 TCAITTLGRGGSDLT-ATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK--PVPYLTFDEAAELA 338 (387)
Q Consensus 276 ~G~~ttLgRGGSD~t-Aa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak--~I~~Lsy~EA~eLa 338 (387)
.|.+..+-||+-.+. =+..|...||..++|+.|.+++...+..-.+..- +.-.|++++...|.
T Consensus 44 ~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 44 KGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred CCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 467888888876443 2677999999999999998754211111111222 33477888887773
No 102
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=34.53 E-value=1.7e+02 Score=29.42 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
--|..++...|++.|...... .++-| +.+.+++.+...+.....+.|++|..|.+.
T Consensus 174 Dsn~~~L~~~L~~~G~~v~~~-----~iVpD-----------D~~~I~~al~~a~~~~~DlIITTGGtg~g~-------- 229 (312)
T PRK03604 174 DRSGKLIVEGLEEAGFEVSHY-----TIIPD-----------EPAEIAAAVAAWIAEGYALIITTGGTGLGP-------- 229 (312)
T ss_pred EhHHHHHHHHHHHCCCEEEEE-----EEcCC-----------CHHHHHHHHHHhhhCCCCEEEECCCCCCCC--------
Confidence 347778888999999876553 12322 234566665432224467999998777652
Q ss_pred CCCcchhHHHHHHHHc
Q 016545 283 GRGGSDLTATTIGKAL 298 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL 298 (387)
.|++--.+....
T Consensus 230 ----~D~tpeAl~~lg 241 (312)
T PRK03604 230 ----RDVTPEALAPLL 241 (312)
T ss_pred ----CccHHHHHHHhc
Confidence 688888888766
No 103
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=34.23 E-value=2e+02 Score=29.91 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|..++.+.|++.|+....+ +++.| +.+.+.+.+.+. ..+..+.|++|..+.+.
T Consensus 204 sn~~~l~a~l~~~G~~~~~~-----~~v~D-----------d~~~i~~~l~~a-~~~~DlvIttGG~S~G~--------- 257 (411)
T PRK10680 204 TNRLAVHLMLEQLGCEVINL-----GIIRD-----------DPHALRAAFIEA-DSQADVVISSGGVSVGE--------- 257 (411)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHh-ccCCCEEEEcCCCCCCC---------
Confidence 36778889999999876654 23322 224455555432 34567999988655441
Q ss_pred CCcchhHHHHHHHHcCCceEEEee
Q 016545 284 RGGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~~v~i~T 307 (387)
-|++.-.+.. +| ++.||.
T Consensus 258 ---~D~~~~al~~-lG--~~~f~~ 275 (411)
T PRK10680 258 ---ADYTKTILEE-LG--EIAFWK 275 (411)
T ss_pred ---cchHHHHHHh-cC--cEEEEE
Confidence 6999988875 46 676665
No 104
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=33.51 E-value=47 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=21.0
Q ss_pred HHHHHHcCCceEEEeecCCcc--cccCCCC
Q 016545 292 TTIGKALGLQEIQVWKDVDGV--LTCDPNI 319 (387)
Q Consensus 292 a~LA~aL~A~~v~i~TDVdGV--~taDPr~ 319 (387)
.+++...-+..++-|+|-+|. |++.|.-
T Consensus 4 l~l~~~a~aa~vYk~~D~~G~v~ysd~P~~ 33 (60)
T PF13511_consen 4 LLLAASAAAAEVYKWVDENGVVHYSDTPPP 33 (60)
T ss_pred HHHhHHHhhccEEEEECCCCCEEECccCCC
Confidence 344555556799999999996 7888764
No 105
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=32.55 E-value=1.8e+02 Score=29.91 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+.++.+.|++.|.....+. ++.| +.+.+++.+.+. .++..+.|++|..+...
T Consensus 195 sn~~~l~~~l~~~G~~~~~~~-----~v~D-----------d~~~i~~~l~~a-~~~~DliittGG~s~g~--------- 248 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDLG-----IVPD-----------DPEALREALEEA-LEEADVVITSGGVSVGD--------- 248 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEec-----eeCC-----------CHHHHHHHHHHH-hhCCCEEEEeCCCCCCc---------
Confidence 477788889999998765541 2322 234556666433 34578999998666542
Q ss_pred CCcchhHHHHHHHHcCCc
Q 016545 284 RGGSDLTATTIGKALGLQ 301 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~ 301 (387)
-|++...+... |.+
T Consensus 249 ---~D~~~~al~~~-g~~ 262 (394)
T cd00887 249 ---YDFVKEVLEEL-GGE 262 (394)
T ss_pred ---chhHHHHHHhC-CCe
Confidence 69999988865 553
No 106
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=30.40 E-value=2.3e+02 Score=29.62 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+.++.+.|++.|.+...+ +++.| +.+.+++.+... .++..+.|++|..+..
T Consensus 221 N~~~L~a~l~~~G~~v~~~-----~~v~D-----------d~~~i~~~l~~a-~~~~DlIItTGG~S~G----------- 272 (419)
T PRK14690 221 NRPMLLALARRWGHAPVDL-----GRVGD-----------DRAALAARLDRA-AAEADVILTSGGASAG----------- 272 (419)
T ss_pred HHHHHHHHHHHCCCEEEEE-----eeeCC-----------CHHHHHHHHHHh-CccCCEEEEcCCccCC-----------
Confidence 7788899999999876553 12322 224456655433 4556799998855543
Q ss_pred CcchhHHHHHHHHcCCceEEEe
Q 016545 285 GGSDLTATTIGKALGLQEIQVW 306 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~ 306 (387)
--|++...|..+ | ++.+|
T Consensus 273 -~~D~v~~~l~~~-G--~~~~~ 290 (419)
T PRK14690 273 -DEDHVSALLREA-G--AMQSW 290 (419)
T ss_pred -CcchHHHHHHhc-C--CEEEc
Confidence 169999988865 5 45565
No 107
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=28.70 E-value=2.6e+02 Score=27.70 Aligned_cols=119 Identities=21% Similarity=0.211 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHHHHh---CCCHHHHHHH
Q 016545 96 ERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL---GIDRSIIATH 172 (387)
Q Consensus 96 e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L---~~~~~~I~~~ 172 (387)
-.+.++.+++.. .+...|||=.|+.|.|=+|+.+.+... .+.+.+-.+.+++..+.+.+ +.......+.
T Consensus 113 ~~l~~l~~~~~~-~~~D~IVvDt~ptg~tLrlL~lP~~l~-------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (305)
T PF02374_consen 113 AALLRLADLLES-GEYDLIVVDTPPTGHTLRLLSLPERLR-------WWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEI 184 (305)
T ss_dssp HHHHHHHHHHHH-CSTSEEEEESSSSHHHHHHHHHHHHHH-------HHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCEEEECCCCcHHHHHHHhHHHHHH-------HHHHHHHHHHHhhcchhhhhhcccccccchHHH
Confidence 355666676653 244678899999999999998765442 13333334444444444444 1222112222
Q ss_pred HHHHHHHHHHhh----hccCCChhHHHHHhhhhhHHH---HHHHHHHHHHcCCCeEEe
Q 016545 173 LEELEQLLKGIA----MLKELTPRSRDYLVSFGECMS---TRIFAAYLNKIGVKARQY 223 (387)
Q Consensus 173 ~~~L~~ll~gi~----~~~e~~~~~~d~Ils~GE~lS---a~Ll~~~L~~~Gi~A~~l 223 (387)
+++|+++.+.+. ++. -+..+.-.++..-|.++ +.=+..+|+..|++...+
T Consensus 185 ~~~l~~~~~~~~~~~~~L~-dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~v 241 (305)
T PF02374_consen 185 LEELEEMRERLERLRELLR-DPERTSFRLVTNPEPLAIAETERLLTELKLYGIPVDAV 241 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHT-STTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccCeE
Confidence 333322222111 111 12223345566666665 344556899999987664
No 108
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.91 E-value=1.1e+02 Score=30.01 Aligned_cols=82 Identities=26% Similarity=0.274 Sum_probs=48.2
Q ss_pred HHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHH--HcCCcccc-----cccccchh-HHHHHHhc-ceE
Q 016545 295 GKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVNI-----SLIVNDDE-AEQCVRAL-HET 365 (387)
Q Consensus 295 A~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa--~~GakVl~-----~~~v~~~~-~~~~~ra~-i~~ 365 (387)
=..|+++ +.+|.||. ++.+.++..-+.+|+.+-+ ++++..+. .+.-.++. .+.+.++. .++
T Consensus 134 R~~l~a~-v~ilaDV~---------~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PV 203 (254)
T PF03437_consen 134 RKRLGAD-VKILADVH---------VKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPV 203 (254)
T ss_pred HHHcCCC-eEEEeeec---------hhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCE
Confidence 3568999 99999996 2345566677788777654 56666541 11111222 33343333 799
Q ss_pred EEeeCCcc------ccccccCCCCccC
Q 016545 366 FFESDLAN------LDCVCGSENNSSL 386 (387)
Q Consensus 366 ~i~~~~~~------~~~~~g~~~g~~~ 386 (387)
++.++-++ .+.--|=-+||++
T Consensus 204 lvGSGvt~~Ni~~~l~~ADG~IVGS~~ 230 (254)
T PF03437_consen 204 LVGSGVTPENIAEYLSYADGAIVGSYF 230 (254)
T ss_pred EEecCCCHHHHHHHHHhCCEEEEeeee
Confidence 98888664 2223355566654
No 109
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=26.35 E-value=3.1e+02 Score=25.56 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC--CCcEEEEcCCccccCCCCceee
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~--~~~IpVv~Gfig~~~~~G~~tt 281 (387)
-|..++.+.|++.|.....+.. .++.+ +.+.|++.+.. |.+ ...+.|++|..|.+.
T Consensus 23 ~ng~~L~~~L~~~G~~g~~v~~---~iVpD-----------d~~~I~~aL~~-a~~~~~~DlIITTGGtg~g~------- 80 (193)
T PRK09417 23 KGIPALEEWLASALTSPFEIET---RLIPD-----------EQDLIEQTLIE-LVDEMGCDLVLTTGGTGPAR------- 80 (193)
T ss_pred chHHHHHHHHHHcCCCCceEEE---EECCC-----------CHHHHHHHHHH-HhhcCCCCEEEECCCCCCCC-------
Confidence 3677788889998764322211 12322 23456666643 333 467999999777663
Q ss_pred eCCCcchhHHHHHHHHcC
Q 016545 282 LGRGGSDLTATTIGKALG 299 (387)
Q Consensus 282 LgRGGSD~tAa~LA~aL~ 299 (387)
.|+|.-.+...++
T Consensus 81 -----rDvTpeAv~~l~~ 93 (193)
T PRK09417 81 -----RDVTPEATLAVAD 93 (193)
T ss_pred -----CCcHHHHHHHHhC
Confidence 6888888888876
No 110
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=25.34 E-value=2.7e+02 Score=30.87 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|..+|.+.|++.|.....+ +++.| +.+.+.+.+...+.....+.|++|..+..
T Consensus 210 N~~~L~a~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a~~~~~DlvItTGGts~G----------- 262 (659)
T PLN02699 210 NRAMLLAAAIQQQCKVVDL-----GIARD-----------DEEELERILDEAISSGVDILLTSGGVSMG----------- 262 (659)
T ss_pred hHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHhhcCCCCEEEECCCCCCC-----------
Confidence 5678889999999876654 23322 23445555543222346799998855543
Q ss_pred CcchhHHHHHHHHcCCceEEEe
Q 016545 285 GGSDLTATTIGKALGLQEIQVW 306 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~ 306 (387)
.-|++.-++.. ++ ++.||
T Consensus 263 -~~D~v~~~l~~-~G--~i~f~ 280 (659)
T PLN02699 263 -DRDFVKPLLEK-RG--TVYFS 280 (659)
T ss_pred -CCccHHHHHHh-cC--cceEE
Confidence 26888888764 44 45554
No 111
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=25.00 E-value=2.7e+02 Score=30.36 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|..++.+.|++.|.+...+ +++.| +.+.+.+.+... .+...+.|++|..+.+.
T Consensus 214 n~~~l~~~l~~~g~~~~~~-----~~v~D-----------d~~~i~~~l~~~-~~~~D~iIttGG~s~g~---------- 266 (633)
T PRK14498 214 NSYTLAAAVEEAGGEPVRY-----GIVPD-----------DEEELEAALRKA-LKECDLVLLSGGTSAGA---------- 266 (633)
T ss_pred hHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCEEEECCCCcCCC----------
Confidence 7778889999999876553 13322 224455555433 34568999998666542
Q ss_pred CcchhHHHHHHHHcCCceEEEe
Q 016545 285 GGSDLTATTIGKALGLQEIQVW 306 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~ 306 (387)
-|++-..+.. ++ ++.+|
T Consensus 267 --~D~~~~~l~~-~g--~~~~~ 283 (633)
T PRK14498 267 --GDVTYRVIEE-LG--EVLVH 283 (633)
T ss_pred --cccHHHHHHh-cC--CEEEe
Confidence 6888888764 55 56655
No 112
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=24.15 E-value=3.4e+02 Score=23.05 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=37.8
Q ss_pred CCceeeeCCCcc--h-hHHHHHHHHcCCceEEEeecCCcccccCCCC-----CCCCccccccCHHHHHHHH
Q 016545 276 TCAITTLGRGGS--D-LTATTIGKALGLQEIQVWKDVDGVLTCDPNI-----HPHAKPVPYLTFDEAAELA 338 (387)
Q Consensus 276 ~G~~ttLgRGGS--D-~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~-----v~~Ak~I~~Lsy~EA~eLa 338 (387)
.|.+..+.||+. + .--...|...||.-++++.+.+|.+...|.. .+..-+.-.|+.+++.+|.
T Consensus 44 ~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 44 EGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred CCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 456666666654 2 2357789999999999999999865322111 0112233356666666554
No 113
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=22.76 E-value=3.1e+02 Score=29.84 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+.+++++|++.|.+...+ +++.| +.+.+++.+.+. +++..+.|++|..+...
T Consensus 206 sNs~~L~a~l~~~G~~v~~~-----~iv~D-----------d~e~i~~~l~~a-l~~~DlVIttGGtS~G~--------- 259 (546)
T PRK14497 206 SNLHYLYSKLKSEGYKIVGL-----SLLSD-----------DKESIKNEIKRA-ISVADVLILTGGTSAGE--------- 259 (546)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHh-hhcCCEEEEcCCccCCC---------
Confidence 37788999999999876553 23322 234455555433 35568999988555431
Q ss_pred CCcchhHHHHHHHHcCCceEEEe
Q 016545 284 RGGSDLTATTIGKALGLQEIQVW 306 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~~v~i~ 306 (387)
-|++.-.+..+ + ++.+|
T Consensus 260 ---~D~~~~al~~l-G--~v~f~ 276 (546)
T PRK14497 260 ---KDFVHQAIREL-G--NIIVH 276 (546)
T ss_pred ---CccHHHHHhhc-C--cEEEc
Confidence 69999888764 5 55544
No 114
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=21.02 E-value=3.4e+02 Score=29.71 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|..++.+.|++.|.....+ +++.+ +.+.+.+.+.+. .+...+.|++|..+.+.
T Consensus 395 n~~~L~~~l~~~G~~v~~~-----~~v~D-----------d~~~i~~~l~~a-~~~~DlIIttGG~s~G~---------- 447 (597)
T PRK14491 395 NRFTIKAMAKKLGCEVIDL-----GIIED-----------SEAALEATLEQA-AAQADVVISSGGVSVGD---------- 447 (597)
T ss_pred CHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHh-hhcCCEEEEcCCccCCC----------
Confidence 6777888999999876554 13322 224455555433 35568999998666542
Q ss_pred CcchhHHHHHHHHcCCceEEEee
Q 016545 285 GGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~T 307 (387)
-|++...+.. +| ++.+|.
T Consensus 448 --~D~~~~al~~-lG--~i~f~~ 465 (597)
T PRK14491 448 --ADYIKTALAK-LG--QIDFWR 465 (597)
T ss_pred --cccHHHHHHh-cC--cEEEEE
Confidence 5888877765 45 676764
No 115
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.91 E-value=1.8e+02 Score=28.62 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=24.7
Q ss_pred ccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCcccc
Q 016545 225 AFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273 (387)
Q Consensus 225 ~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~ 273 (387)
..|+-++.-+.-+..+.+..+.+.+...+. ...+||++| +|..
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~-----~~~~Pvisa-IGHe 117 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIA-----ASPIPVISA-IGHE 117 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHH-----hCCCCEEEe-cCCC
Confidence 344434443322223455556666665553 356999999 8875
No 116
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=20.80 E-value=4.5e+02 Score=23.18 Aligned_cols=67 Identities=15% Similarity=0.317 Sum_probs=44.9
Q ss_pred CccccCCCCceeeeCCCcc------hhHHHHHHHHcCCceEEEeecC--CcccccCCCCCC-C-Ccccc--ccCHHHHHH
Q 016545 269 FLGKAWRTCAITTLGRGGS------DLTATTIGKALGLQEIQVWKDV--DGVLTCDPNIHP-H-AKPVP--YLTFDEAAE 336 (387)
Q Consensus 269 fig~~~~~G~~ttLgRGGS------D~tAa~LA~aL~A~~v~i~TDV--dGV~taDPr~v~-~-Ak~I~--~Lsy~EA~e 336 (387)
|.+.+ -.|++..+-||+- -.--...|..-||.-++||.+. +|.+. |.+.. + ...|| .|++++..+
T Consensus 50 ~~~~d-~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~--~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 50 YICGG-MAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQN--PFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred ccCCC-cCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCccc--ccccCCCCCceEeEEEeeHHHHHH
Confidence 33445 3688999999864 3345777999999999999999 88542 11111 1 23455 677777777
Q ss_pred HH
Q 016545 337 LA 338 (387)
Q Consensus 337 La 338 (387)
|.
T Consensus 127 L~ 128 (139)
T cd04817 127 LL 128 (139)
T ss_pred HH
Confidence 75
No 117
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=20.44 E-value=3.7e+02 Score=23.21 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=37.4
Q ss_pred CceeeeCCCcch-hHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc
Q 016545 277 CAITTLGRGGSD-LTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (387)
Q Consensus 277 G~~ttLgRGGSD-~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~ 340 (387)
|.+....||+.. ..-...|...||.-++++.|.++...-.+.. ...-+.-.|++++..+|...
T Consensus 48 GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~-~~~iP~v~Is~~dG~~L~~~ 111 (143)
T cd02133 48 GKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE-AVFIPVVFISKEDGEALKAA 111 (143)
T ss_pred ceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC-CCeEeEEEecHHHHHHHHHH
Confidence 444444454432 2345667788999999999988743221111 11234557788888887643
Done!