Query 016545
Match_columns 387
No_of_seqs 207 out of 1915
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 8.8E-60 3E-64 490.0 30.9 308 59-373 6-314 (510)
2 3c1m_A Probable aspartokinase; 100.0 7.1E-55 2.4E-59 449.9 30.9 281 81-373 1-291 (473)
3 2j0w_A Lysine-sensitive aspart 100.0 3.1E-54 1.1E-58 442.5 27.0 278 79-373 1-282 (449)
4 3tvi_A Aspartokinase; structur 100.0 2.5E-53 8.7E-58 435.1 24.1 261 80-373 2-269 (446)
5 3l76_A Aspartokinase; alloster 100.0 2.8E-44 9.4E-49 380.4 20.0 231 80-372 1-235 (600)
6 3ab4_A Aspartokinase; aspartat 100.0 2.7E-43 9.1E-48 358.5 23.4 232 80-373 1-235 (421)
7 2j4j_A Uridylate kinase; trans 100.0 5.8E-29 2E-33 232.5 17.0 212 81-386 1-223 (226)
8 2ap9_A NAG kinase, acetylgluta 100.0 3.7E-29 1.3E-33 243.5 16.0 244 80-386 25-288 (299)
9 1gs5_A Acetylglutamate kinase; 100.0 1.7E-28 5.7E-33 233.8 19.8 242 80-386 2-256 (258)
10 2a1f_A Uridylate kinase; PYRH, 100.0 2.4E-28 8.2E-33 231.5 19.8 220 79-385 7-237 (247)
11 1ybd_A Uridylate kinase; alpha 100.0 3E-28 1E-32 229.1 17.6 219 80-386 7-237 (239)
12 2jjx_A Uridylate kinase, UMP k 100.0 8.8E-27 3E-31 222.0 21.9 221 78-386 10-244 (255)
13 4a7w_A Uridylate kinase; trans 99.9 5.3E-27 1.8E-31 222.1 19.0 218 80-385 7-238 (240)
14 1z9d_A Uridylate kinase, UK, U 99.9 2.1E-26 7.2E-31 218.9 21.1 220 80-386 7-238 (252)
15 3ek6_A Uridylate kinase; UMPK 99.9 1.1E-26 3.9E-31 220.3 17.8 219 80-386 9-239 (243)
16 2ij9_A Uridylate kinase; struc 99.9 2.2E-26 7.5E-31 213.8 17.3 211 81-386 1-218 (219)
17 2brx_A Uridylate kinase; UMP k 99.9 1.5E-26 5.1E-31 219.2 15.8 215 80-386 19-242 (244)
18 3nwy_A Uridylate kinase; allos 99.9 3.6E-26 1.2E-30 221.3 17.2 221 79-386 49-279 (281)
19 3ll9_A Isopentenyl phosphate k 99.9 3E-26 1E-30 220.3 13.2 167 203-386 89-265 (269)
20 2rd5_A Acetylglutamate kinase- 99.9 3.1E-26 1.1E-30 222.9 12.9 245 80-386 36-296 (298)
21 2va1_A Uridylate kinase; UMPK, 99.9 3.5E-25 1.2E-29 211.1 18.7 220 80-386 24-254 (256)
22 2ogx_B Molybdenum storage prot 99.9 2.1E-25 7.1E-30 214.4 16.2 220 82-386 38-267 (270)
23 2j5v_A Glutamate 5-kinase; pro 99.9 9.5E-26 3.2E-30 225.9 13.3 232 80-386 4-255 (367)
24 2ako_A Glutamate 5-kinase; str 99.9 8.9E-26 3E-30 214.0 12.0 231 81-386 2-250 (251)
25 2bty_A Acetylglutamate kinase; 99.9 2.9E-25 9.9E-30 214.1 14.2 241 80-386 21-277 (282)
26 2ogx_A Molybdenum storage prot 99.9 1.7E-25 5.8E-30 215.8 12.1 218 82-386 41-269 (276)
27 2egx_A Putative acetylglutamat 99.9 1E-24 3.5E-29 209.2 17.4 177 190-386 67-268 (269)
28 2v5h_A Acetylglutamate kinase; 99.9 8E-25 2.7E-29 215.5 13.3 244 80-386 49-308 (321)
29 3d40_A FOMA protein; fosfomyci 99.9 1.1E-24 3.7E-29 211.2 11.5 222 81-379 24-267 (286)
30 3ll5_A Gamma-glutamyl kinase r 99.9 1.1E-23 3.9E-28 200.1 16.4 229 80-386 3-248 (249)
31 2buf_A Acetylglutamate kinase; 99.9 1.6E-23 5.5E-28 204.1 16.7 241 80-386 26-294 (300)
32 1e19_A Carbamate kinase-like c 99.9 2E-23 6.9E-28 204.8 9.5 243 80-386 2-312 (314)
33 3l86_A Acetylglutamate kinase; 99.9 6.3E-22 2.2E-26 191.4 11.2 148 204-373 115-272 (279)
34 3k4o_A Isopentenyl phosphate k 99.9 3.2E-21 1.1E-25 185.1 14.5 158 203-386 98-262 (266)
35 3zzh_A Acetylglutamate kinase; 99.8 1.3E-21 4.4E-26 191.5 10.2 236 79-386 47-299 (307)
36 2we5_A Carbamate kinase 1; arg 99.8 2E-20 6.7E-25 183.1 16.7 122 258-386 179-308 (310)
37 2e9y_A Carbamate kinase; trans 99.8 6.5E-21 2.2E-25 187.1 12.9 241 79-386 3-313 (316)
38 3d2m_A Putative acetylglutamat 99.8 7E-21 2.4E-25 194.5 13.1 239 80-386 43-301 (456)
39 4ab7_A Protein Arg5,6, mitocho 99.8 8.4E-21 2.9E-25 194.9 12.9 235 80-386 48-299 (464)
40 3s6g_A N-acetylglutamate kinas 99.8 1.3E-19 4.3E-24 186.2 11.1 239 78-386 56-308 (460)
41 3s6k_A Acetylglutamate kinase; 99.7 5.1E-19 1.7E-23 181.9 0.0 239 78-386 59-311 (467)
42 4axs_A Carbamate kinase; oxido 99.6 8E-16 2.7E-20 152.0 12.8 120 258-386 200-330 (332)
43 3kzf_A Carbamate kinase; argin 99.5 8.6E-14 2.9E-18 136.2 13.9 125 256-386 183-314 (317)
44 3kbq_A Protein TA0487; structu 79.3 4.6 0.00016 35.6 7.1 74 204-307 23-96 (172)
45 1mkz_A Molybdenum cofactor bio 69.9 9.2 0.00031 33.3 6.5 68 204-299 28-96 (172)
46 2is8_A Molybdopterin biosynthe 64.7 10 0.00035 32.6 5.7 67 205-299 22-89 (164)
47 1y5e_A Molybdenum cofactor bio 64.3 15 0.0005 31.8 6.6 67 204-299 31-99 (169)
48 2fts_A Gephyrin; gephyrin, neu 62.8 15 0.00052 36.6 7.3 73 205-307 209-281 (419)
49 2pjk_A 178AA long hypothetical 61.4 17 0.0006 31.8 6.7 67 204-299 40-108 (178)
50 3rfq_A Pterin-4-alpha-carbinol 57.8 18 0.00062 32.1 6.1 68 204-299 49-116 (185)
51 3pzy_A MOG; ssgcid, seattle st 57.5 14 0.00048 32.0 5.2 66 205-299 28-93 (164)
52 2g2c_A Putative molybdenum cof 57.1 14 0.00048 31.9 5.2 67 205-299 26-96 (167)
53 3iwt_A 178AA long hypothetical 54.3 27 0.00094 30.0 6.7 67 205-299 41-108 (178)
54 2pbq_A Molybdenum cofactor bio 50.6 37 0.0013 29.5 6.9 65 205-299 26-95 (178)
55 1g8l_A Molybdopterin biosynthe 49.8 46 0.0016 33.1 8.3 71 205-307 205-275 (411)
56 1uuy_A CNX1, molybdopterin bio 48.4 44 0.0015 28.6 7.0 67 205-299 26-98 (167)
57 1jlj_A Gephyrin; globular alph 48.1 45 0.0015 29.4 7.1 68 204-299 34-105 (189)
58 1di6_A MOGA, molybdenum cofact 47.7 44 0.0015 29.7 7.1 67 205-299 24-93 (195)
59 1uz5_A MOEA protein, 402AA lon 47.1 40 0.0014 33.5 7.3 71 205-307 208-278 (402)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=8.8e-60 Score=489.95 Aligned_cols=308 Identities=73% Similarity=1.061 Sum_probs=262.1
Q ss_pred cchhhhcccccccccccCCCCCceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcC
Q 016545 59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138 (387)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~ 138 (387)
.+.+++++++.|+ .+..+..+.|+|+|||||||+|++++++|+++|.+..+++++||||||||+||.|+++++.+..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~ 84 (510)
T 2cdq_A 6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 84 (510)
T ss_dssp --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence 3456887764443 345567789999999999999999999999999765556889999999999999999988875543
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCC
Q 016545 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (387)
Q Consensus 139 ~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi 218 (387)
....++.+.++.|+++|..++++|+.+.+.|++.+++|++++.++....+++++.+|+++++||++|+.+++++|++.|+
T Consensus 85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi 164 (510)
T 2cdq_A 85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV 164 (510)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33445566899999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCC-CCceeeeCCCcchhHHHHHHHH
Q 016545 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA 297 (387)
Q Consensus 219 ~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~-~G~~ttLgRGGSD~tAa~LA~a 297 (387)
+|+++++.+++++|+++|+++++.+.++.++.+.+...|++.+.|||++||+|.+ + +|.++||||||||++|+++|.+
T Consensus 165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~ 243 (510)
T 2cdq_A 165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA 243 (510)
T ss_dssp CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence 9999999999999999999888776666666666654445678999999999998 6 8999999999999999999999
Q ss_pred cCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 298 L~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|+|+.+++||||||||++|||++|+|++|++|||+|+.||+++|++|||| ..+..+.++.++++|.+...|
T Consensus 244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~-----~a~~~a~~~gIpv~I~n~~~p 314 (510)
T 2cdq_A 244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHP-----QSMRPAREGEIPVRVKNSYNP 314 (510)
T ss_dssp HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCH-----HHHHHHHHHTCCEEEEETTST
T ss_pred cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHH-----HHHHHHHHCCCeEEEEccCcC
Confidence 99999999999999999999999999999999999999999999999973 467788999999999988654
No 2
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=7.1e-55 Score=449.86 Aligned_cols=281 Identities=37% Similarity=0.597 Sum_probs=251.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhcC-CCC-CcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLASAERMREVAELILSF-PNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e~i~~Va~iI~~~-~~~-~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
||+|+|||||||+|++++++|+++|.+. .++ +++||||||||+||.|+++++.+..++ ...++.+.++.|+++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~i~~va~ii~~~~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR-DIAKVGDFIKFIREKHYKA 79 (473)
T ss_dssp -CEEEEECTTTTSSHHHHHHHHHHHHHHHTTCSCEEEEECCSTTHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhhcCCCCEEEEEcCChhhHHHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999653 355 789999999999999999988775421 1235677899999999999
Q ss_pred HHHhCCCH---H----HHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 159 VDELGIDR---S----IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 159 ~~~L~~~~---~----~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
+++|..+. + .|+..+++|++++.++..+++++++.+|+++++||++|+.|++++|++.|++|+++++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~ 159 (473)
T 3c1m_A 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGII 159 (473)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEE
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEE
Confidence 99998763 3 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcee-cccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
++++|+++++ .+.+++.+++. ++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+.+++|||||
T Consensus 160 t~~~~~~~~~~~~~~~~~i~~l-----l~~g~ipVv~G~~g~~-~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 160 TDNNFGSARVKRLEVKERLLPL-----LKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp ECSCTTSCCEEEECHHHHHHHH-----HHTTCEEEEESSEEEE-TTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EccCCCCccccHhhhHHHHHHH-----HhCCcEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 9999999888 57777666642 3567899999999998 589999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|||++|||++|++++|+++||+|+.+|+++|+++||| ..+..+.++.++++|.+...|
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~-----~a~~~a~~~gi~v~I~~~~~~ 291 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHP-----RTIEPAMEKGIPILVKNTFEP 291 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCG-----GGHHHHHHHTCCEEEEETTST
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHH-----HHHHHHHHcCCEEEEEecCCC
Confidence 9999999999999999999999999999999999985 356778889999999987654
No 3
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=3.1e-54 Score=442.52 Aligned_cols=278 Identities=32% Similarity=0.426 Sum_probs=236.2
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+|+|+|+|||||||+|++++++|+++|.... ++++||||||||+||.|+++++.+. ...+.+.++.++++|.++
T Consensus 1 mm~~~V~KFGGTSv~~~e~i~~va~ii~~~~-~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i 74 (449)
T 2j0w_A 1 MSEIVVSKFGGTSVADFDAMNRSADIVLSDA-NVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAI 74 (449)
T ss_dssp --CCEEEEECSGGGSSHHHHHHHHHHHTSCT-TEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCccCCCHHHHHHHHHHHHhcC-CCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999997643 4889999999999999999876531 123455688999999999
Q ss_pred HHHhCCCH---HHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 159 VDELGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 159 ~~~L~~~~---~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
+++|..+. +.|+..+++| +.+.++..+.+ +++.+|+++++||++|+.+++.+|++.|++++++++.++ ++|+++
T Consensus 75 ~~~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~ 151 (449)
T 2j0w_A 75 LERLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDR 151 (449)
T ss_dssp HTTSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSC
T ss_pred HHHhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCC
Confidence 99998764 3578888888 55677777665 589999999999999999999999999999999999999 889889
Q ss_pred CCCceecccc-hHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 236 FTNADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 236 ~~~a~i~~~~-~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
|+++++.... .++..+.+ ..+++ +.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~l-~~l~~-~~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~ 228 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQL-LPRLN-EGLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYT 228 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHT-HHHHH-HSEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEES
T ss_pred CCCccccHhHhHHHHHHHH-HHHhc-CCEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCc
Confidence 9888774322 12223222 22333 3499999999998 5899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
+|||++|+|++|+++||+|+.+|+++|+||+| +..+..+.++.++++|.+..+|
T Consensus 229 ~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh-----~~a~~~a~~~gi~v~I~~~~~p 282 (449)
T 2j0w_A 229 TDPRVVSAAKRIDEIAFAEAAEMATFGAKVLH-----PATLLPAVRSDIPVFVGSSKDP 282 (449)
T ss_dssp SCTTTCTTCCEESEEEHHHHHHHHHTTCTTSC-----TTTHHHHHHHTCCEEEEESSCT
T ss_pred CCCCCCCCCEEccCccHHHHHHHHhcCCccch-----HHHHHHHHHCCCeEEEEECCCC
Confidence 99999999999999999999999999999997 4456778899999999988654
No 4
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=2.5e-53 Score=435.09 Aligned_cols=261 Identities=29% Similarity=0.397 Sum_probs=215.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCCCCCcEEEEcCCCc-------CchHHHHHhHHHhhcCCCCcchhHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg-------vTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (387)
.||+|+|||||||+|+++|++|+++|.+. +++++|||||||+ +||.|+++++.+..+ .++.+.++.++
T Consensus 2 ~~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~ 76 (446)
T 3tvi_A 2 LKIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLIS 76 (446)
T ss_dssp --CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHH
T ss_pred CccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHH
Confidence 37999999999999999999999999874 4688999999995 999999999887653 34678899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEe
Q 016545 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (387)
Q Consensus 153 ~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit 232 (387)
++|..++++|+.+.+. +++++++++.+. ..+.+|+|+|+||+||+.||+++| ++.+++++++++.+
T Consensus 77 ~~~~~i~~~L~~~~~~----~~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~ 142 (446)
T 3tvi_A 77 QRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFD 142 (446)
T ss_dssp HHHHHHHHHHTCCSCH----HHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBC
T ss_pred HHHHHHHHHhcccHHH----HHHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeC
Confidence 9999999999877532 233334444321 127789999999999999999997 58999999986554
Q ss_pred eCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcc
Q 016545 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (387)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV 312 (387)
+ +++.+++.+.+.+.+ +++.+.|||++||+|.+ ++|.++||||||||++|+++|.+|+|+++++|||||||
T Consensus 143 ~---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGv 213 (446)
T 3tvi_A 143 K---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGF 213 (446)
T ss_dssp C-----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred C---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 4 445555555544443 24678999999999998 58999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 313 ~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
|++|||++|+|++|++|||+|+.||+++|++|+| +.+++.+.++.|+++|.|...|
T Consensus 214 yt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~-----~~a~~~a~~~~ipi~i~~~~~p 269 (446)
T 3tvi_A 214 LMADPRIVENPKTISKISYKELRELSYMGATVLH-----EEAIFPVKDSGIPINIKNTNKP 269 (446)
T ss_dssp BSSCTTTSSSCCBCSEEEHHHHHHTTTC----CC-----STTTHHHHHSSCCEEEEETTBT
T ss_pred CCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcch-----HHHHHHHHHcCCeEEEecCCCC
Confidence 9999999999999999999999999999999997 5667899999999999987554
No 5
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=2.8e-44 Score=380.37 Aligned_cols=231 Identities=32% Similarity=0.427 Sum_probs=193.4
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|+++|+|||||||++++++++++++|... .+.+++||+||||++||.|++++...
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~----------------------- 57 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI----------------------- 57 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH-----------------------
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh-----------------------
Confidence 57899999999999999999999999754 24578999999999999998754321
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
. ...+++.+|+++++||++|+.+++.+|+++|++++++++.+.++++++.++
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~ 109 (600)
T 3l76_A 58 -----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109 (600)
T ss_dssp -----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC----
T ss_pred -----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC
Confidence 0 123457789999999999999999999999999999999999999988888
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCC--ceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccccc
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G--~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ta 315 (387)
++++...+++.+.+. ++.+.|||++||+|.+ ++| +++||||||||++|+++|.+|+|+++++||||||||++
T Consensus 110 ~~~~~~~~~~~i~~l-----l~~g~IpVv~Gf~g~~-~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 183 (600)
T 3l76_A 110 RARILEIRPDRLEHH-----LREGKVVVVAGFQGIS-SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183 (600)
T ss_dssp ---CCEEEECCHHHH-----HTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSS
T ss_pred CceeccccHHHHHHH-----HhCCCEEEEECCeecC-CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCC
Confidence 887765554445443 3568999999999998 589 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCc
Q 016545 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLA 372 (387)
Q Consensus 316 DPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~ 372 (387)
|||++|+|++|++|||+|+.+|+++|+++||| .++..+.++.++++|.|...
T Consensus 184 dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p-----~a~~~a~~~gipv~I~n~~~ 235 (600)
T 3l76_A 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHP-----RAVEIARNYGIPLVVRSSWS 235 (600)
T ss_dssp CTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCH-----HHHHHHHHHTCCEEEEETTC
T ss_pred CCCCCCCCeEeeEEcHHHHHHHHhCCCCccHH-----HHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999999999999999984 66888999999999988754
No 6
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=2.7e-43 Score=358.50 Aligned_cols=232 Identities=36% Similarity=0.490 Sum_probs=172.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|++.|+||||||+.+++.+++++++|... .+.++|||+||+|+.||.|++.....
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~----------------------- 57 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV----------------------- 57 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh-----------------------
Confidence 56899999999999999999999999653 34578899999999999998653211
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
....+++.+|++++.||++|+.+++++|++.|++++++++.++++++++.|+
T Consensus 58 ----------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~ 109 (421)
T 3ab4_A 58 ----------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG 109 (421)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC
Confidence 0123568889999999999999999999999999999999999889988888
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCC-CceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccC
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~-G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taD 316 (387)
++++...+.+.+++. ++.+.|||++||+|.+ ++ |+++||||||||++|+++|.+|+|++++|||||||||++|
T Consensus 110 ~~~v~~~~~~~i~~~-----l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 183 (421)
T 3ab4_A 110 NARIVDVTPGRVREA-----LDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 (421)
T ss_dssp ------CCHHHHHHH-----HHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSC
T ss_pred CeeechhhHHHHHHH-----HhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCC
Confidence 888766666655543 3568899999999998 58 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc
Q 016545 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN 373 (387)
Q Consensus 317 Pr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~ 373 (387)
||++|++++|++|||+|+.||+++|++++| +.++..+.++.+++.|.|...+
T Consensus 184 Pr~~~~a~~i~~is~~e~~el~~~Ga~v~~-----~~a~~~a~~~gi~v~I~n~~~~ 235 (421)
T 3ab4_A 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILV-----LRSVEYARAFNVPLRVRSSYSN 235 (421)
T ss_dssp TTTSTTCCBCSEECHHHHHHHHHTTCCSSC-----HHHHHHHHHTTCCEEEEESSSC
T ss_pred CCCCCCCeEccccCHHHHHHHHhcCCcCch-----HHHHHHHHHcCCCEEEecCcCC
Confidence 999999999999999999999999999987 4567889999999999987654
No 7
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.96 E-value=5.8e-29 Score=232.46 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=156.5
Q ss_pred ceEEEEeCccccC--CHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (387)
Q Consensus 81 ~~~V~KFGGSSv~--s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~ 156 (387)
|+.|+||||+++. +++.++++++.|.... +.++|+|+|| |..++.+++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~--------------------------- 52 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIK--------------------------- 52 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHH---------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHH---------------------------
Confidence 4789999999999 8999999999997542 3355555554 555555432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC
Q 016545 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (387)
Q Consensus 157 ~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (387)
++++++.+. ...|++.++|+.+|+.|++.+|++.|+++ +
T Consensus 53 -~~~~~g~~~-------------------------~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 53 -LAREIGIGE-------------------------AYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp -HHHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred -HHHHhCCCc-------------------------ccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 233344332 45677788899999999998999999865 1
Q ss_pred CCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccC
Q 016545 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (387)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taD 316 (387)
..+.+.+++ +++.+.|||++| | . + .+.+|++|+.+|.+|+|+++++||||||||++|
T Consensus 92 ------~~~~~~i~~-----ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFIQ-----DWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHHH-----HHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHHH-----HHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 112333432 246789999999 3 2 1 244999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHc-CCccccccc--cc-chhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQVNISLI--VN-DDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 317 Pr~v~~Ak~I~~Lsy~EA~eLa~~-GakVl~~~~--v~-~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|+++|++++|++|+|+|+.+++.. |++ .++| +. ...+..+.++.++++|.|...| .++++|+..||.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~--~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i 223 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSV--QAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC------------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEE
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCC--cCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEE
Confidence 999999999999999999999644 543 2233 33 3456678889999999998765 5577898889854
No 8
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.96 E-value=3.7e-29 Score=243.54 Aligned_cols=244 Identities=17% Similarity=0.217 Sum_probs=181.6
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+++.|+||||+++.+++.++++++.|.... ....+|||+++|+.++.+++...
T Consensus 25 ~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 78 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG-------------------------- 78 (299)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999988989998876542 23446666668888887765321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (387)
.... +.+++ +..++..++.+ ++.|+ ++.. +..+|++.|++++++++.+.+++++..+
T Consensus 79 -----~~~~-----------~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~ 137 (299)
T 2ap9_A 79 -----IEGD-----------FKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRR 137 (299)
T ss_dssp -----CCCC-----------CSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEEC
T ss_pred -----Cccc-----------ccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEec
Confidence 1100 00011 12334455554 34687 5666 5788999999999999999877876543
Q ss_pred C------------CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEE
Q 016545 237 T------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (387)
Q Consensus 237 ~------------~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~ 304 (387)
. .+++...+.+.+++ +++.+.|||++|| +.+ ++|+.++++ +|++|+.+|.+|+|++++
T Consensus 138 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~li 207 (299)
T 2ap9_A 138 SVTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLL 207 (299)
T ss_dssp CBCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 2 12333344444443 2367899999997 777 589999996 999999999999999999
Q ss_pred EeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcce-EEEeeCCcc----cccccc
Q 016545 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHE-TFFESDLAN----LDCVCG 379 (387)
Q Consensus 305 i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~-~~i~~~~~~----~~~~~g 379 (387)
|||||||||++||+ ++++|++|+|+|+.+|+++|...|+|++ .++..+.++.++ ++|.|+..| .++++|
T Consensus 208 ilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl---~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~ 281 (299)
T 2ap9_A 208 MLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKV---EACLRAVIGGVPSAHIIDGRVTHCVLVELFTD 281 (299)
T ss_dssp EEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHH---HHHHHHHHHTCSEEEEEETTSTTHHHHHHHSC
T ss_pred EEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHH---HHHHHHHHcCCCEEEEecCCCCcHHHHHHhcC
Confidence 99999999999998 6799999999999999988877777665 466677888887 899998765 467788
Q ss_pred CCCCccC
Q 016545 380 SENNSSL 386 (387)
Q Consensus 380 ~~~g~~~ 386 (387)
+.+||.+
T Consensus 282 ~~~GT~i 288 (299)
T 2ap9_A 282 AGTGTKV 288 (299)
T ss_dssp CCCSEEE
T ss_pred CCCcEEE
Confidence 8889854
No 9
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.96 E-value=1.7e-28 Score=233.82 Aligned_cols=242 Identities=14% Similarity=0.200 Sum_probs=175.3
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
|++.|+||||+++.+++.++++++.|... ...+++||||++|+.||.|++...... ...
T Consensus 2 m~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~-------~~~------------ 62 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPV-------KKK------------ 62 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCC-------CEE------------
T ss_pred CccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCc-------cee------------
Confidence 45799999999999999999999998643 234678999999999999987532110 000
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCC
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (387)
..+.. .+....+.+ ..+++++|+.|++ .|++.|++++.+++.+.+++++.+.
T Consensus 63 --~glr~------------------------t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~ 115 (258)
T 1gs5_A 63 --NGLRV------------------------TPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp --TTEEC------------------------BCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred --CCEee------------------------CCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEc
Confidence 00000 011111111 2457799999987 5799999999999999888887532
Q ss_pred C----C-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 237 T----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 237 ~----~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
. . +++...+.+.+++. ++.+.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||
T Consensus 116 ~~d~~~~g~~~~~~~~~i~~l-----l~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~G 184 (258)
T 1gs5_A 116 DEELGHVGLAQPGSPKLINSL-----LENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHHH-----HHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSS
T ss_pred CCCCCCcCceeEECHHHHHHH-----HHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCc
Confidence 1 1 23334444445432 367899999997 777 589999997 999999999999999 999999999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccc-cchh-HHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIV-NDDE-AEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v-~~~~-~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
||++| +++|++|+|+|+.+|+..|. ..++|. ..+. ...+.+..++++|.|+..| .++++|+..||.+
T Consensus 185 v~~~d------~~~i~~i~~~e~~~l~~~~~--~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i 256 (258)
T 1gs5_A 185 ILDGK------GQRIAEMTAAKAEQLIEQGI--ITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRI 256 (258)
T ss_dssp CBCTT------SCBCCEECHHHHHHHHHTTC--SCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEE
T ss_pred eECCC------CCCCcccCHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEE
Confidence 99976 57899999999999987653 222220 0133 3345667899999998776 6677888889854
No 10
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.96 E-value=2.4e-28 Score=231.51 Aligned_cols=220 Identities=18% Similarity=0.173 Sum_probs=157.3
Q ss_pred CCceEEEEeCccccC-------CHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
++++.|+||||+++. +.+.++++++.|.... ....+|+|++.|...+.+.
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~---------------------- 64 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK---------------------- 64 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHH----------------------
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchh----------------------
Confidence 357899999999999 5689999999887542 2334455554455543221
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
+..++.+. +..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.
T Consensus 65 --------~~~~g~~~-------------------------~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~ 111 (247)
T 2a1f_A 65 --------LAKAGMNR-------------------------VVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG 111 (247)
T ss_dssp --------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred --------HHHcCCCC-------------------------CcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccc
Confidence 11233332 334566788999999999999999999999999877643
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+.+ .| ....++ .+++.+.|||++|+.|. ..+.+|++|+.+|.+|+|++++||||||
T Consensus 112 ~~~-~~--------~~~~~~-----~ll~~g~ipVi~~~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTDVd 167 (247)
T 2a1f_A 112 ICD-TY--------NWSEAI-----KMLREKRVVIFSAGTGN----------PFFTTDSTACLRGIEIEADVVLKATKVD 167 (247)
T ss_dssp TSE-EC--------CHHHHH-----HHHHTTCEEEEESTTSC----------SSCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred ccc-hh--------hHHHHH-----HHHhCCCEEEEeCCcCC----------CCCCcHHHHHHHHHhCCCCEEEEEeCCC
Confidence 211 11 112232 23467899999984331 1345999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCcc
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSS 385 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~ 385 (387)
|||++|||++|++++|++|+|+|+.++ |+++++ +..+..+.++.++++|.|...| .++++|+.+||-
T Consensus 168 Gvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~-----~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~ 237 (247)
T 2a1f_A 168 GVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD-----LSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTT 237 (247)
T ss_dssp SCBCC-------CCBCSEECHHHHHHT---TCCSSC-----HHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEE
T ss_pred cccCCCCCCCCCCeEcccCCHHHHHHc---CccccC-----HHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceE
Confidence 999999999999999999999999874 776663 3456778889999999998765 778889999984
No 11
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.96 E-value=3e-28 Score=229.07 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=162.7
Q ss_pred CceEEEEeCccccC-------CHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 80 ~~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
+++.|+||||+++. +.+.++++++.|.... +.++|+|+|+ |...+...
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~~---------------------- 63 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGVS---------------------- 63 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHH----------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhchh----------------------
Confidence 56899999999998 4688999999887642 3344445544 43211110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
+..++.+. +..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.
T Consensus 64 --------~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~ 110 (239)
T 1ybd_A 64 --------AQAGSMDR-------------------------ATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ 110 (239)
T ss_dssp --------HHHTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred --------HHHcCCCC-------------------------ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence 22333332 234456778999999999999999999999998877643
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+.+ +|. ..+ .. .+++.+.|||++||.|.. .+.+|++|+.+|.+|+|++++||||||
T Consensus 111 ~~~-~~~--------~~~----~~-~ll~~g~ipVv~g~~g~~----------~~~~D~~Aa~lA~~l~Ad~liilTdVd 166 (239)
T 1ybd_A 111 IAE-TYA--------RPK----AI-QYLEEGKVVIFAAGTGNP----------FFTTDTAAALRGAEMNCDVMLKATNVD 166 (239)
T ss_dssp SCE-ECC--------HHH----HH-HHHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred ccc-chh--------HHH----HH-HHHhCCcEEEEECCccCC----------CCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence 322 121 111 12 224678999999865531 245999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|||++||+++|+|++|++|+|+|+.++ |+++++ +..+..+.++.++++|.|...| .++++|+.+||.+
T Consensus 167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~-----~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i 237 (239)
T 1ybd_A 167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMD-----ATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237 (239)
T ss_dssp SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSC-----HHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEE
T ss_pred ccCCCCCCCCCCCeEccccCHHHHHHh---cccccC-----HHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEE
Confidence 999999999999999999999999874 776664 3456778889999999998765 6678898899854
No 12
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.95 E-value=8.8e-27 Score=222.00 Aligned_cols=221 Identities=20% Similarity=0.229 Sum_probs=159.3
Q ss_pred CCCceEEEEeCccccCC-------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHH
Q 016545 78 EKQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (387)
Q Consensus 78 ~~~~~~V~KFGGSSv~s-------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l 148 (387)
...++.|+||||+++.+ .+.++++++.|.... +.++|+|+|| |...+.+.
T Consensus 10 ~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~-------------------- 68 (255)
T 2jjx_A 10 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL-------------------- 68 (255)
T ss_dssp CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH--------------------
T ss_pred ccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH--------------------
Confidence 34578999999999985 789999999987542 3456666666 66543331
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHH-cCCCeEEecccc
Q 016545 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFD 227 (387)
Q Consensus 149 ~~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~-~Gi~A~~ld~~d 227 (387)
++.++++.. ..+.+..++..+|+.||+.+|++ .|+++.++++.+
T Consensus 69 ----------~~~~g~~~~-------------------------~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~ 113 (255)
T 2jjx_A 69 ----------AEEWGIDRV-------------------------EADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIP 113 (255)
T ss_dssp ----------HHHTTCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSC
T ss_pred ----------HHHcCCCCC-------------------------ChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHH
Confidence 112333321 00111222337899989999999 999999999988
Q ss_pred eeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEee
Q 016545 228 IGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 228 ~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~T 307 (387)
.+++++ . .+...+. .+++.+.|||++| | + .+..++ +|++|+.+|.+|+|+++++||
T Consensus 114 ~~~v~~-~--------~~~~~~~-----~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 114 FNAVAE-P--------YIRLRAV-----HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp CCSSSE-E--------CCHHHHH-----HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEE
T ss_pred cCcccC-c--------ccHHHHH-----HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEe
Confidence 754432 1 1222222 2246789999998 2 2 122233 699999999999999999999
Q ss_pred -cCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCC
Q 016545 308 -DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENN 383 (387)
Q Consensus 308 -DVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g 383 (387)
||||||++||+++|++++|++|+|+|+.++ |+++++ +..++.+.+..++++|.|...| .+.++|+..|
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~-----~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~G 241 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMD-----QAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVG 241 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSC-----HHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCS
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCH-----HHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCc
Confidence 999999999999999999999999998875 877764 2345567778999999998766 5677888888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|.+
T Consensus 242 T~I 244 (255)
T 2jjx_A 242 TLI 244 (255)
T ss_dssp EEE
T ss_pred eEE
Confidence 853
No 13
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.95 E-value=5.3e-27 Score=222.10 Aligned_cols=218 Identities=22% Similarity=0.236 Sum_probs=158.3
Q ss_pred CceEEEEeCccccC-------CHHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 80 ~~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
++++|+||||+++. +++.++++++.|.... +.++|+|+|+ |.+.+.+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~-------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA-------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence 56899999999998 7899999999887542 3355555554 5655332210
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEeccccee
Q 016545 151 VKDLHHRTVDELG-IDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (387)
Q Consensus 151 i~~~h~~~~~~L~-~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ 229 (387)
.++ .+. ...|++-.+.+++|+.+++.+|++.|++++.+++.+++
T Consensus 66 ----------~~G~~~~-------------------------~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~ 110 (240)
T 4a7w_A 66 ----------QGGIIRR-------------------------TSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIK 110 (240)
T ss_dssp -------------CCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCT
T ss_pred ----------hcCCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcC
Confidence 011 111 22344434567899999999999999999999988864
Q ss_pred eEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
.++. . .+.+.+.+ +++.+.|||++|+.|.. .+ .+|++|+++|.+|+|+.+++||||
T Consensus 111 ~~~~-------~--~~~~~i~~-----lL~~g~ipVi~~~~g~~-------~~---~~D~~Aa~lA~~l~Ad~li~lTdV 166 (240)
T 4a7w_A 111 EICE-------S--YIYRKAIR-----HLEKGRVVIFGAGTGNP-------FF---TTDTAATLRAIEIGSDLIIKATKV 166 (240)
T ss_dssp TTSE-------E--CCHHHHHH-----HHHTTCEEEEESTTSCT-------TS---CHHHHHHHHHHHTTCSEEEEEESS
T ss_pred cccC-------c--CcHHHHHH-----HHHCCCEEEEeCCCCCC-------CC---ChHHHHHHHHHHcCCCEEEEccCC
Confidence 3221 1 12333432 23678999999865532 12 299999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCC-CCcc
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSE-NNSS 385 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~-~g~~ 385 (387)
||||++||+++|+|++|++++|+|+.++ |+++++ ...+..+.++.+++.|.|...| .+.+.|++ +||.
T Consensus 167 dGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~-----~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~ 238 (240)
T 4a7w_A 167 DGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD-----DTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSM 238 (240)
T ss_dssp SSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSC-----HHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEE
T ss_pred CceECCCCCCCCCCeEcceecHHHHHhc---CccccH-----HHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCcee
Confidence 9999999999999999999999998874 666664 3557778899999999999776 56777764 6774
No 14
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.95 E-value=2.1e-26 Score=218.88 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=162.8
Q ss_pred CceEEEEeCccccC-------CHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 80 ~~~~V~KFGGSSv~-------s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
+++.|+||||+++. +.+.++++++.|.... ....+|+|++.|...+.+.
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~----------------------- 63 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP----------------------- 63 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence 46899999999999 4689999999887542 2344555655566544331
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
+++++.+. +..|.+..+++.+|+.++..+|.+.|++++++++.+.+.+
T Consensus 64 -------~~~lg~~~-------------------------~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~ 111 (252)
T 1z9d_A 64 -------AADAGMDR-------------------------VQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV 111 (252)
T ss_dssp -------HHHHTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred -------HHHcCCCC-------------------------CchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence 11233332 2233456688899999999999999999999988765432
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEee-cCC
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~T-DVd 310 (387)
.+ .| ....+ . .+++.+.|||++|+.|. .++++|++|+.+|.+|+|++++||| |||
T Consensus 112 ~~-~~--------~~~~~-~----~lL~~g~IpVi~~~~g~----------~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd 167 (252)
T 1z9d_A 112 AE-PY--------IRGRA-L----RHLEKNRIVVFGAGIGS----------PYFSTDTTAALRAAEIEADAILMAKNGVD 167 (252)
T ss_dssp BE-EC--------CHHHH-H----HHHHTTCEEEEESTTSC----------TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred cC-cc--------hHHHH-H----HHHhCCCEEEEeCCcCC----------CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence 22 11 11222 1 23467899999984321 2456999999999999999999999 999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|||++||+++|++++|++|+|+|+.+ +|+.+++ ...+..+.++.++++|.+...| .++++|+..||.+
T Consensus 168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk-----~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i 238 (252)
T 1z9d_A 168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMD-----ATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 238 (252)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSC-----HHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEE
T ss_pred eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccC-----HHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEE
Confidence 99999999999999999999999886 5665552 3456678889999999999765 6678898889854
No 15
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.94 E-value=1.1e-26 Score=220.28 Aligned_cols=219 Identities=19% Similarity=0.200 Sum_probs=161.8
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s-------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
++++|+|+||+++.+ .+.++++++.|.... +.++++|+|+ |.+.....
T Consensus 9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~---------------------- 65 (243)
T 3ek6_A 9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG---------------------- 65 (243)
T ss_dssp CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT----------------------
T ss_pred CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH----------------------
Confidence 467899999999986 688999999887543 3355555554 44321110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
...++.+. ...|++..+..++|+.++..+|.+.|++++.+++.+.+.
T Consensus 66 --------~~~~g~~~-------------------------~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 66 --------LAASGMDR-------------------------VTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp --------TSCSSSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred --------HHHcCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 00123222 233444445668999999999999999999999988654
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+++ ++ +.+.+.+ +++.+.|||+.|+.|.. .+.+|++|+++|.+|+|+.+++|||||
T Consensus 113 v~~-~~--------~~~~~~~-----lL~~g~IpVv~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCE-DF--------IRRRAIR-----HLEKGRIAIFAAGTGNP----------FFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBE-EC--------CHHHHHH-----HHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccC-cC--------CHHHHHH-----HHHCCcEEEEECCCCCC----------cCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 432 11 2223322 24678999999955432 134999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
|||++||+++|+|++|++++|+|+.+ .|.++++ ...+..+.++.++++|.+...| .++++|+.+||.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~-----~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i 239 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMD-----TAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSC-----HHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEE
T ss_pred ccCCCCCCCCCCceecccccHHHHHh---CCchhHH-----HHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEE
Confidence 99999999999999999999999877 3666653 3556678899999999999775 6788899999864
No 16
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.94 E-value=2.2e-26 Score=213.83 Aligned_cols=211 Identities=19% Similarity=0.248 Sum_probs=152.0
Q ss_pred ceEEEEeCccccCC-HHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 81 ~~~V~KFGGSSv~s-~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
|+.|+||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~--------------------------- 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA--------------------------- 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence 46899999999999 899999999886532 3344555554 77877764322
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCC
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (387)
++++.+ +...|.+.+.++.+++.|++.+|+.. +..
T Consensus 53 -~~~g~~-------------------------~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~------------------ 87 (219)
T 2ij9_A 53 -RELGAS-------------------------ETFCDYIGIAATRLNAMLLISAIPSA-AKK------------------ 87 (219)
T ss_dssp -HHTTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHCTTB-CSS------------------
T ss_pred -HHcCCC-------------------------ccchHHHHHHHHHHHHHHHHHHHHHh-cCC------------------
Confidence 233332 24556677778899999998766542 110
Q ss_pred ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCC
Q 016545 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (387)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr 318 (387)
+ ..+.+.+++ +++.+.|||++| | . + + +.+|++|+.+|.+|+|+.+++||||||||++||+
T Consensus 88 -~--~~~~~~i~~-----ll~~g~ipVi~~--g-~-~------~--~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~ 147 (219)
T 2ij9_A 88 -V--PVDFMEAEE-----LSKLYRVVVMGG--T-F-P------G--HTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp -C--CSSHHHHHH-----HHTTCSEEEECC--C-S-S------S--SCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred -C--cCCHHHHHH-----HHHCCCEEEEeC--C-C-C------C--CCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence 0 112333432 246789999998 3 2 1 1 2499999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHc-CCcccccccccc-hhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 319 IHPHAKPVPYLTFDEAAELAYF-GAQVNISLIVND-DEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 319 ~v~~Ak~I~~Lsy~EA~eLa~~-GakVl~~~~v~~-~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
++|++++|++++|+|+.++++. |+. -...++.. ..++.+.+..++++|.|+ .| .++++|+.+||-+
T Consensus 148 ~~~~a~~i~~i~~~e~~~~~~~~g~~-~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i 218 (219)
T 2ij9_A 148 SDTSAVKYDRLSPQQLVEIVSRSSAK-AGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVI 218 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC------CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEE
T ss_pred CCCCCeEeeeeCHHHHHHHHhcCCCC-CCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEe
Confidence 9999999999999999999876 541 11112233 345667888999999998 76 5677898899854
No 17
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.94 E-value=1.5e-26 Score=219.20 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=154.6
Q ss_pred CceEEEEeCccccC----CHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (387)
Q Consensus 80 ~~~~V~KFGGSSv~----s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h 155 (387)
.+++|+||||+++. +.+.++++++.|....+...+|+|++.|..++.++.
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~-------------------------- 72 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIE-------------------------- 72 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHH--------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHH--------------------------
Confidence 46799999999999 779999999988754223345555555655554432
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 156 ~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
.++.++++. ...|.+.+.|+.+|+.|++.+|++.|+++ +
T Consensus 73 --~~~~~gl~~-------------------------~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 73 --VAEKFNSSE-------------------------TFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp --HHHTTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred --HHHHcCCCc-------------------------ccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 122344332 45566777799999999998999999764 0
Q ss_pred CCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCccccc
Q 016545 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (387)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~ta 315 (387)
..+.+.+.+ +++.+.|||++| |. +. +.+|++|+.+|.+|+|+.++|||||||||++
T Consensus 112 -------~~~~~~i~~-----lL~~g~IpVi~g--g~--~~--------~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAWK-----AVQLKKIPVMGG--TH--PG--------HTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHHH-----HHHTTCBCEECC--CS--TT--------CCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHHH-----HHhCCCEEEEcC--CC--CC--------CCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 012233332 246789999998 32 11 2389999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHc-CCcccccccccch-hHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 316 DPNIHPHAKPVPYLTFDEAAELAYF-GAQVNISLIVNDD-EAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 316 DPr~v~~Ak~I~~Lsy~EA~eLa~~-GakVl~~~~v~~~-~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
||+++|++++|++|+|+|+.+++.. |+.. ...++.++ .++.+.+..++++|.|+..| .++++|+..||.+
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~-g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i 242 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKA-GSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC---------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEE
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCC-CCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEe
Confidence 9999999999999999999999655 5311 11122233 45567888999999987655 5677898889864
No 18
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.94 E-value=3.6e-26 Score=221.35 Aligned_cols=221 Identities=20% Similarity=0.294 Sum_probs=156.5
Q ss_pred CCceEEEEeCccccC------CHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 79 KQLTCVMKFGGSSLA------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~------s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
..+++|+|+||+++. +.+.++++++.|.... ....+||||+.|.+...+...
T Consensus 49 ~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~--------------------- 107 (281)
T 3nwy_A 49 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ--------------------- 107 (281)
T ss_dssp CCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTT---------------------
T ss_pred cCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHH---------------------
Confidence 357799999999998 5789999999887643 234455555445554322100
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
.++++. ...|++..+++++|+.++...|++.|++++.+.+.+.+.+
T Consensus 108 ---------~~gl~~-------------------------~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~ 153 (281)
T 3nwy_A 108 ---------QLGMER-------------------------TRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQV 153 (281)
T ss_dssp ---------TTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGG
T ss_pred ---------hcCCCc-------------------------cchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccccc
Confidence 122222 2345666678899999999999999999988877666444
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
++ .|. +.+... +++.+.|||+.|+.|.. .+.+|++|+++|.+|+|+.+++||||||
T Consensus 154 ~~-~~~------------~~~~l~-lL~~g~IpVv~g~~g~~----------~~~~D~~Aa~lA~~l~Ad~LiilTDVdG 209 (281)
T 3nwy_A 154 AE-PYL------------PLRAVR-HLEKGRVVIFGAGMGLP----------YFSTDTTAAQRALEIGADVVLMAKAVDG 209 (281)
T ss_dssp SE-ECC------------HHHHHH-HHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred cc-ccc------------hHHHHH-HHHcCCeEEEECCCCCC----------CCCHHHHHHHHHHHcCCCEEEEeeccCc
Confidence 31 221 111222 24678999999854431 2459999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
||++||+++|+|++|++++|+|+.+ .|..+++ ...+..+.++.++++|.+..+| .++++|+.+||-+
T Consensus 210 Vy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k-----~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i 279 (281)
T 3nwy_A 210 VFAEDPRVNPEAELLTAVSHREVLD---RGLRVAD-----ATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLV 279 (281)
T ss_dssp CBCC-----CCCCBCSEECHHHHHT---TTCCSSC-----HHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEE
T ss_pred cccCCCCcCCCCeEcccccHHHHHH---cCCCcHH-----HHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEE
Confidence 9999999999999999999999855 4555543 3456678899999999999776 6788899999864
No 19
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.93 E-value=3e-26 Score=220.30 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCC--Ccee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~--G~~t 280 (387)
.+|+. +.++|++.|++++++++.+.++++. +++...+.+.+++. ++.+.|||++||++.+ .+ |+++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~l-----L~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRSY-----LEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHHH-----HHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHHH-----HHCCCEEEECCCEEec-ccccCcce
Confidence 67886 5668999999999999999876652 34444444444432 3668999999999987 47 8888
Q ss_pred eeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc-CCcccccccccchh---HH
Q 016545 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-GAQVNISLIVNDDE---AE 356 (387)
Q Consensus 281 tLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~-GakVl~~~~v~~~~---~~ 356 (387)
+++ +|++|+.+|.+|+|+++++||||||||++||+++|++++|++++++|+.++..- +......+| .++ +.
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM--~~Kl~aa~ 231 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGM--VGKIRELL 231 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC---------------------SHHHHHHH
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCc--HHHHHHHH
Confidence 897 999999999999999999999999999999999999999999999999776531 112233333 244 44
Q ss_pred HHHHhcceEEEeeCCcc---ccccccCCC-CccC
Q 016545 357 QCVRALHETFFESDLAN---LDCVCGSEN-NSSL 386 (387)
Q Consensus 357 ~~~ra~i~~~i~~~~~~---~~~~~g~~~-g~~~ 386 (387)
.+.++.++++|.++..| .++++|+.+ ||.+
T Consensus 232 ~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i 265 (269)
T 3ll9_A 232 LLAEKGVESEIINAAVPGNIERALLGEEVRGTRI 265 (269)
T ss_dssp HHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC
T ss_pred HHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEE
Confidence 44566779999999776 678889998 9864
No 20
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.93 E-value=3.1e-26 Score=222.95 Aligned_cols=245 Identities=14% Similarity=0.202 Sum_probs=171.5
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+++.|+||||+++.+++.++++++.|.... ....+|+|+++|..++.+++...
T Consensus 36 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 89 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN-------------------------- 89 (298)
T ss_dssp TCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT--------------------------
T ss_pred CCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcC--------------------------
Confidence 467999999999999988888888776532 23345566667777776665321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC-
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~- 235 (387)
.+.. +.+++ +..++...|.+ ++.|+. |.. +...|++.|++++.+++.+.+++++.+
T Consensus 90 -----~~~~-----------~~~g~---R~t~~~~l~~~~~~~~G~~-n~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 148 (298)
T 2rd5_A 90 -----IPAE-----------FRDGL---RVTDATTMEIVSMVLVGKV-NKN-LVSLINAAGATAVGLSGHDGRLLTARPV 148 (298)
T ss_dssp -----CCCC-----------EETTE---ECBCHHHHHHHHHHHHHTH-HHH-HHHHHHHTTSCEEEEETTGGGCEEEEEC
T ss_pred -----CCcc-----------ccCCc---ccCCHHHHHHHHHHHhchH-HHH-HHHHHHhCCCCccccChHHCCEEEEEeC
Confidence 1100 00111 11233444443 224665 554 567899999999999988877777653
Q ss_pred -----CCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 236 -----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 236 -----~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
++. +++...+.+.+++. ++.+.|||++|+ +.+ ..|+..+++ +|++|+.+|.+|+|++++|||||
T Consensus 149 ~~~~d~g~~g~v~~v~~~~i~~l-----L~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdV 218 (298)
T 2rd5_A 149 PNSAQLGFVGEVARVDPSVLRPL-----VDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDV 218 (298)
T ss_dssp TTHHHHBSEEEEEEECGGGHHHH-----HHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CccccCCcceEEEEECHHHHHHH-----HhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 332 23333344444432 366899999986 776 578889997 99999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHHcCCccccccccc-chhHHHHHHhcce-EEEeeCCcc----ccccccCCCC
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVN-DDEAEQCVRALHE-TFFESDLAN----LDCVCGSENN 383 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~-~~~~~~~~ra~i~-~~i~~~~~~----~~~~~g~~~g 383 (387)
||||++||+ | +++|++|+++|+.+++..| +..++|.. ..++..+.++.++ ++|.|+..+ .++++|+..|
T Consensus 219 dGVy~~dp~--~-a~~i~~is~~e~~~~~~~g--~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~G 293 (298)
T 2rd5_A 219 AGILENKED--P-SSLIKEIDIKGVKKMIEDG--KVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAG 293 (298)
T ss_dssp SSEESSSSC--T-TSEECEEEHHHHHHHHHTT--SSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSE
T ss_pred cCeecCCCC--C-CCCcccCCHHHHHHHHHCC--CCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCc
Confidence 999999998 5 9999999999999999875 33444411 1334456777886 889888665 4677888888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|.+
T Consensus 294 T~i 296 (298)
T 2rd5_A 294 TMI 296 (298)
T ss_dssp EEE
T ss_pred eEE
Confidence 853
No 21
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.93 E-value=3.5e-25 Score=211.14 Aligned_cols=220 Identities=19% Similarity=0.197 Sum_probs=150.5
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHH
Q 016545 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s-------~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (387)
++++|.||||+++.+ .+.++++++.|........+|+|++.|...+.+.
T Consensus 24 ~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------ 79 (256)
T 2va1_A 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------ 79 (256)
T ss_dssp CSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH------------------------
T ss_pred cCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch------------------------
Confidence 467999999999984 5688999988765433344566665576655442
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEe
Q 016545 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (387)
Q Consensus 153 ~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit 232 (387)
++.++++. ...|....++..+++.|+..+|.+.|++++.+...+.
T Consensus 80 ------~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~---- 124 (256)
T 2va1_A 80 ------AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC---- 124 (256)
T ss_dssp ------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC----
T ss_pred ------HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec----
Confidence 11233332 1122334455588999989999999999998876543
Q ss_pred eCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeec-CCc
Q 016545 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (387)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TD-VdG 311 (387)
+.+.+..+ ...+ ..+++.+.|||+.|+.| +.++++|++|+.+|.+|+|++++|||| |||
T Consensus 125 -~~~~~~~~----~~~~-----~~lL~~g~IpVi~~~~g----------~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdG 184 (256)
T 2va1_A 125 -DKLVHESS----ANNI-----KKAIEKEQVMIFVAGTG----------FPYFTTDSCAAIRAAETESSIILMGKNGVDG 184 (256)
T ss_dssp -TTTCEECC----HHHH-----HHHHHTTCEEEEESTTS----------SSSCCHHHHHHHHHHHHTCSEEEEEESSCCS
T ss_pred -ccccchhh----HHHH-----HHHHhCCcEEEEECCCC----------CCCCChhHHHHHHHHhCCCCEEEEeecccCe
Confidence 22222111 1222 12356789999998322 124679999999999999999999999 999
Q ss_pred ccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
||++||+++|++++|++|+|+|+.++ +..++ ....+..+.++.++++|.+...| .++++|+.+||.+
T Consensus 185 Vy~~dP~~~p~a~~i~~is~~e~~~~---~~~~m-----k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i 254 (256)
T 2va1_A 185 VYDSDPKINPNAQFYEHITFNMALTQ---NLKVM-----DATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIV 254 (256)
T ss_dssp BCSCC--------CBSEEEHHHHHHH---TCCSS-----CHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEE
T ss_pred EEcCCCCCCCCCEEccEEcHHHHHHh---ccCCc-----cHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEE
Confidence 99999999999999999999999988 33343 23456677889999999999765 6677898889854
No 22
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.93 E-value=2.1e-25 Score=214.41 Aligned_cols=220 Identities=15% Similarity=0.212 Sum_probs=152.3
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 82 ~~V~KFGGSSv~s--~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
+.|.||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+..
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 7899999999987 5889999998875432244555555555443322110
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHH--HhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY--LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~--Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (387)
.+++.+. ...+. ..+.| ++..++...|.+.|++. ++..++
T Consensus 90 ~~~g~~~-------------------------~~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~- 131 (270)
T 2ogx_B 90 AGLGLPA-------------------------GVLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL- 131 (270)
T ss_dssp HHTTCCH-------------------------HHHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT-
T ss_pred HhcCCCh-------------------------HHHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH-
Confidence 1122221 11111 23334 56667777888889872 222222
Q ss_pred CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC---CcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR---GGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
..+++ +++.+.|||++||.|.+. ....++.|+ +++|++|+.+|.+|+|+.+++||||||||+
T Consensus 132 ---------~~i~~-----lL~~g~ipVi~g~~g~~~-~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~ 196 (270)
T 2ogx_B 132 ---------SAVPL-----SLAEVNAVVFSGMPPYKL-WMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYT 196 (270)
T ss_dssp ---------CHHHH-----HCTTCCEEEEECSCTTGG-GCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEES
T ss_pred ---------HHHHH-----HHhCCCEEEEeCCccccc-cccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccC
Confidence 12222 246789999999988653 222223444 789999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
+||+.+|++++|++++|+|+.+++..| +++++.| .++.+.+..+ ++++|.|...| .++++|+.+||-+
T Consensus 197 ~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm--~~kl~aa~~~-~~v~I~~g~~~~~l~~~l~g~~~GT~i 267 (270)
T 2ogx_B 197 ANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPV--LDLLQSAQHV-REVQVVNGLVPGNLTRALAGEHVGTII 267 (270)
T ss_dssp SCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHH--HHHHHHCSSC-CEEEEEETTSTTHHHHHHTTCCCSEEE
T ss_pred CCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHH--HHHHHHhhcC-CcEEEEeCCCchHHHHHHcCCCCCeEe
Confidence 999999999999999999999998765 5676655 3555555444 39999998765 6678898889854
No 23
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.93 E-value=9.5e-26 Score=225.89 Aligned_cols=232 Identities=19% Similarity=0.267 Sum_probs=134.9
Q ss_pred CceEEEEeCccccCC------HHHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHH
Q 016545 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s------~e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (387)
.++.|+||||+++.+ .+.+.++++.|.... +.++|+|+|+. +.--+
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~------------------------ 57 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGR------------------------ 57 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHH------------------------
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHH------------------------
Confidence 467999999999998 488999998887542 33444444543 21111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeE
Q 016545 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (387)
Q Consensus 152 ~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~ii 231 (387)
..|+.+. +..+-...+.+.+.|+.....++..+|++.|+++..+ .+
T Consensus 58 --------~~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~qv------ll 103 (367)
T 2j5v_A 58 --------EHLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQM------LL 103 (367)
T ss_dssp --------HHHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEE------EE
T ss_pred --------HHcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE------EE
Confidence 0122221 1122245566678999988999999999999998753 45
Q ss_pred eeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceee--eCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~tt--LgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
+.+++.+. ..+-+.++.+ ..+++.+.|||+.+. +.+++ +.+|++|++|+++|.+|+|+.++|||||
T Consensus 104 t~~d~~~~----~r~~n~~~~i-~~LL~~g~IPIv~en-------d~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDV 171 (367)
T 2j5v_A 104 TRADMEDR----ERFLNARDTL-RALLDNNVVPVINEN-------DAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQ 171 (367)
T ss_dssp CGGGGSSH----HHHHHHHHHH-HHHHHTTCEEEEEEC-------TTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ecccccCc----eEEEhHHHHH-HHHHHCCCEEEECCC-------CceecccccCCCHHHHHHHHHHhcCCCEEEEeecC
Confidence 55555431 1111222233 234577899999631 12222 6788999999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCH--HHHHHHHH-----cCCcccccccccchhHHHHHHhcceEEEeeCCcc---cccccc
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVCG 379 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy--~EA~eLa~-----~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~g 379 (387)
||||++||+.+|++++|+++++ +|+.+++. +|...|+|++ .++..+.++.++++|.+...| .++++|
T Consensus 172 dGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl---~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g 248 (367)
T 2j5v_A 172 KGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL---QAADVACRAGIDTIIAAGSKPGVIGDVMEG 248 (367)
T ss_dssp ------------------------------------------CHHHH---HHHHHHHHTTCEEEEEETTSTTHHHHHHHT
T ss_pred CceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHH---HHHHHHHHcCCCEEEEcCCCchHHHHHhcC
Confidence 9999999999999999999999 99999976 3666676664 567778899999999998775 667788
Q ss_pred CCCCccC
Q 016545 380 SENNSSL 386 (387)
Q Consensus 380 ~~~g~~~ 386 (387)
+..||-+
T Consensus 249 ~~~GT~i 255 (367)
T 2j5v_A 249 ISVGTLF 255 (367)
T ss_dssp CCCSEEE
T ss_pred CCCcEEE
Confidence 8888854
No 24
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.93 E-value=8.9e-26 Score=214.01 Aligned_cols=231 Identities=17% Similarity=0.197 Sum_probs=158.7
Q ss_pred ceEEEEeCccccC-----CHHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHH
Q 016545 81 LTCVMKFGGSSLA-----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (387)
Q Consensus 81 ~~~V~KFGGSSv~-----s~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h 155 (387)
++.|+||||+++. +.+.++++++.|....+...+|+|++.| +...+.
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgGg-~~~~~~--------------------------- 53 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAA-ISAGHT--------------------------- 53 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCH-HHHHHH---------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCH-HHHHHH---------------------------
Confidence 5789999999999 7889999998887542113455555433 221111
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC
Q 016545 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (387)
Q Consensus 156 ~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (387)
.++.+. ......+.+.+.|+....+++..+|++.|+++..+ .++.++
T Consensus 54 -----~~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~~ 100 (251)
T 2ako_A 54 -----KLDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKD 100 (251)
T ss_dssp -----HCCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGG
T ss_pred -----HhCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------Eeccch
Confidence 122111 00122356778888888888999999999998753 333334
Q ss_pred CCCceecccchHHHHH-HHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccc
Q 016545 236 FTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (387)
Q Consensus 236 ~~~a~i~~~~~~~i~~-~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~t 314 (387)
|.. ++ .++.. .....+++.+.|||++|+-+... ++. .++++|++|+.+|.+|+|+++++||||||||+
T Consensus 101 ~~~-~~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~~--~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~ 169 (251)
T 2ako_A 101 FDS-RK-----ATKHAKNAIDMMINLGILPIINENDATAI--EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYD 169 (251)
T ss_dssp GGC-HH-----HHHHHHHHHHHHHHTTCEEEEEECTTTCC--HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBS
T ss_pred hcC-cc-----eEehHHHHHHHHHHCCCEEEEeCCCceee--cce---eecCchHHHHHHHHhcCCCEEEEEeCCCceee
Confidence 322 11 12211 22333457789999997533321 122 45779999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCHH--HHHHHHH-----cCCcccccccccchhHHHHHHhcceEEEeeCCcc---cc--ccccCCC
Q 016545 315 CDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LD--CVCGSEN 382 (387)
Q Consensus 315 aDPr~v~~Ak~I~~Lsy~--EA~eLa~-----~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~--~~~g~~~ 382 (387)
+||+++|++++|++|+|+ |+.+++. +|...|.|++ .++..+.++.++++|.|+..| .+ +++|+..
T Consensus 170 ~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~---~aa~~a~~~gv~v~I~~g~~~~~l~~~~~~~g~~~ 246 (251)
T 2ako_A 170 KNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKL---KAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIG 246 (251)
T ss_dssp SCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHH---HHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCS
T ss_pred CCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHH---HHHHHHHHCCCeEEEEeCCChhhhhhhHHhcCCCC
Confidence 999999999999999999 9999976 4555454443 556677888999999998776 66 7789888
Q ss_pred CccC
Q 016545 383 NSSL 386 (387)
Q Consensus 383 g~~~ 386 (387)
||.+
T Consensus 247 GT~i 250 (251)
T 2ako_A 247 GTLF 250 (251)
T ss_dssp SEEE
T ss_pred ceEe
Confidence 9864
No 25
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.92 E-value=2.9e-25 Score=214.15 Aligned_cols=241 Identities=20% Similarity=0.231 Sum_probs=169.0
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+++.|+||||+++.+++.++++++.|.... ....+|+|+++|+.++.+++...
T Consensus 21 ~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~-------------------------- 74 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG-------------------------- 74 (282)
T ss_dssp TCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999988999998876542 23345666667877777765321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC--
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (387)
.+.. +.+++ +..++...|.+ +..|+. +.. +...|++.|++++.+++.+.+++++.
T Consensus 75 -----~~~~-----------~~~g~---r~t~~~~l~~~~~~~~G~~-~~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 133 (282)
T 2bty_A 75 -----IEPV-----------FKNGH---RVTDEKTMEIVEMVLVGKI-NKE-IVMNLNLHGGRAVGICGKDSKLIVAEKE 133 (282)
T ss_dssp -----CCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTH-HHH-HHHHHHTTTCCEEEEETTGGGSEEEEEC
T ss_pred -----CCcc-----------ccCCc---ccCCHHHHHHHHHHHhhHH-HHH-HHHHHHhCCCCceecChhhCCEEEEecC
Confidence 1100 00011 11233444432 235765 554 66789999999999998877676654
Q ss_pred ----CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
+++. +++...+.+.+++. ++.+.|||++|| +.+ +.|+.++++ +|++|+.+|.+|+|+.+++||||
T Consensus 134 ~~~~d~g~~g~v~~~~~~~i~~l-----l~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDV 203 (282)
T 2bty_A 134 TKHGDIGYVGKVKKVNPEILHAL-----IENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDV 203 (282)
T ss_dssp CTTCCCBSBEEEEEECTHHHHHH-----HHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CcccCCCcceEEEEecHHHHHHH-----HHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 3443 34434444444432 356899999987 777 578888886 99999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHHcCCccccccccc-chhHHHHHHhcce-EEEeeCCcc----ccccccCCCC
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVN-DDEAEQCVRALHE-TFFESDLAN----LDCVCGSENN 383 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~-~~~~~~~~ra~i~-~~i~~~~~~----~~~~~g~~~g 383 (387)
||||++ | ++|++|+|+|+.+++..| ...++|.. ..++..+.++.++ ++|.|+..+ .++++|+..|
T Consensus 204 dGvy~~-----~--~~i~~i~~~e~~~~~~~g--~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~G 274 (282)
T 2bty_A 204 DGVLKD-----G--KLISTLTPDEAEELIRDG--TVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIG 274 (282)
T ss_dssp SSCEET-----T--EECCEECHHHHHHHHTTT--CSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSS
T ss_pred CCeecC-----c--hhhhhCCHHHHHHHHHcC--CCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCc
Confidence 999997 3 899999999999999876 33444421 1344556788887 899888665 4566788888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|.+
T Consensus 275 T~i 277 (282)
T 2bty_A 275 TMI 277 (282)
T ss_dssp EEE
T ss_pred eEE
Confidence 854
No 26
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.92 E-value=1.7e-25 Score=215.80 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=154.7
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHhcCCCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 016545 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (387)
Q Consensus 82 ~~V~KFGGSSv~s--~e~i~~Va~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 159 (387)
+.|+||||+ +.+ .+.+.++++.|........+|+||+.|+..+.+++. .
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~----------------------------~ 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSV----------------------------G 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHH----------------------------H
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhc----------------------------c
Confidence 799999999 887 689999999887643334455555545544333321 0
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCc
Q 016545 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (387)
Q Consensus 160 ~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (387)
.+.+.+ ....+.+...++.+|..+++.++.+.|++++.+..
T Consensus 92 ~~~gl~-------------------------~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~~-------------- 132 (276)
T 2ogx_A 92 LDLGLP-------------------------VGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPT-------------- 132 (276)
T ss_dssp HHTTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHHH--------------
T ss_pred CcCCCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC--------------
Confidence 112222 24555666667899999999888888886542210
Q ss_pred eecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCce-eeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCC
Q 016545 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (387)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~-ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr 318 (387)
..+.++ .+++.+.|||+.||.+.+. ++.+ ..+.++++|++|+.+|.+|+|+.+++||||||||++||+
T Consensus 133 -----~~~~i~-----~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 133 -----VADQLA-----IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp -----HHHHHH-----HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred -----hHHHHH-----HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 112222 2245689999999987652 1211 123456699999999999999999999999999999999
Q ss_pred --CCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHH-H--HhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 319 --IHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQC-V--RALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 319 --~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~-~--ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
.+|++++|++|+++|+.+++ |..+|+| ++..+ . +..++++|.++..+ .+.++|+..||-+
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~------K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i 269 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDR------ALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLI 269 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCH------HHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEE
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHH------HHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEE
Confidence 89999999999999999987 6667654 44443 3 33679999998766 6777888889853
No 27
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.92 E-value=1e-24 Score=209.20 Aligned_cols=177 Identities=13% Similarity=0.134 Sum_probs=129.3
Q ss_pred ChhHHHHHhhh--hhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCC----------------C-ceecccchHHHH
Q 016545 190 TPRSRDYLVSF--GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT----------------N-ADILEATYPAVA 250 (387)
Q Consensus 190 ~~~~~d~Ils~--GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~----------------~-a~i~~~~~~~i~ 250 (387)
++..++.+.+. |+. + ..+...|+++|+++..+++.|.+++++...+ . +++...+.+.++
T Consensus 67 ~~~~l~~~~~~~~G~i-~-~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~ 144 (269)
T 2egx_A 67 DRKTLEIFEMVYCGLV-N-KRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLD 144 (269)
T ss_dssp CHHHHHHHHHHHHTHH-H-HHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHH
T ss_pred CHHHHHHHHHHHHhHH-H-HHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHH
Confidence 34555665444 555 4 4566789999999999999998777764331 1 233334444443
Q ss_pred HHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccC
Q 016545 251 KRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (387)
Q Consensus 251 ~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Ls 330 (387)
+ +++.+.|||+++ ++.+ .+|++++++ +|++|+.+|.+|+|+++++||||||||+ || .|++++|++|+
T Consensus 145 ~-----ll~~g~ipVi~~-v~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp--~~~a~~i~~i~ 211 (269)
T 2egx_A 145 L-----LLQAGYLPVLTP-PALS-YENEAINTD---GDQIAALLATLYGAEALVYLSNVPGLLA-RY--PDEASLVREIP 211 (269)
T ss_dssp H-----HHHTTCEEEEEC-CEEE-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESSSSCBC---------CBCCEEC
T ss_pred H-----HHHCCCEEEEcC-cEEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCchhhhc-CC--CCCccccccCC
Confidence 3 246789999995 7777 578877555 9999999999999999999999999999 99 38999999999
Q ss_pred HHHHH--HHHHcCCcccccccccchhHHHHHHhcc-eEEEeeCCcc---ccccccCCCCccC
Q 016545 331 FDEAA--ELAYFGAQVNISLIVNDDEAEQCVRALH-ETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 331 y~EA~--eLa~~GakVl~~~~v~~~~~~~~~ra~i-~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
++|+. +|+.++...|+|++ .++..+.++.+ +++|.+...| .+.+.| .||.+
T Consensus 212 ~~e~~~~~l~~~~~ggm~~Kl---~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i 268 (269)
T 2egx_A 212 VERIEDPEYLALAQGRMKRKV---MGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVV 268 (269)
T ss_dssp HHHHHCHHHHTTSCHHHHHHH---HHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEE
T ss_pred HHHhhHHHhcCCCCCchHHHH---HHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEE
Confidence 99999 99777777777654 55667788888 9999998665 455666 68754
No 28
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.92 E-value=8e-25 Score=215.46 Aligned_cols=244 Identities=16% Similarity=0.221 Sum_probs=168.2
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+++.|+||||+++.+++.++++++.|.... ....+|+|++.|...+.+++.
T Consensus 49 ~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~---------------------------- 100 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGR---------------------------- 100 (321)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH----------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------------------------
Confidence 467999999999999888888888775432 233344555446666555432
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC--
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (387)
++.+.. +.+++ +..++...|.+ ++.|+. |.. +...|++.|++++.+++.+.+++++.
T Consensus 101 ---~g~~~~-----------~~~g~---Rvt~~~~l~~~~~~~~G~i-n~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~~ 161 (321)
T 2v5h_A 101 ---VGIEPQ-----------FHNGL---RVTDADTMEVVEMVLVGRV-NKD-IVSRINTTGGRAVGFCGTDGRLVLARPH 161 (321)
T ss_dssp ---TTCCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTH-HHH-HHHHHHHHTCCEEEECTTGGGSEEEEEC
T ss_pred ---cCCCcc-----------ccCCc---ccCCHHHHHHHHHHHhChH-HHH-HHHHHHhCCCCeeeeChhhccEEEeecC
Confidence 221110 00111 11234555554 234654 665 56689999999999998877777664
Q ss_pred ---CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+++. .++...+.+.+++ +++.+.|||+.+ ++.+ ..|+..+++ +|++|+.+|.+|+|+.++|+||||
T Consensus 162 ~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDVd 231 (321)
T 2v5h_A 162 DQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDTR 231 (321)
T ss_dssp SSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCCC
Confidence 4554 2343334444433 246789999994 6777 478776665 999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcC--CcccccccccchhHHHHHHhcce-EEEeeCCcc----ccccccCCCC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVNISLIVNDDEAEQCVRALHE-TFFESDLAN----LDCVCGSENN 383 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~G--akVl~~~~v~~~~~~~~~ra~i~-~~i~~~~~~----~~~~~g~~~g 383 (387)
|||++||+ ++++|++|+++|+.+++..| +..|+|++ .++..+.++.++ ++|.|+..+ .++++|+..|
T Consensus 232 GVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl---~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~G 305 (321)
T 2v5h_A 232 GILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKV---DCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIG 305 (321)
T ss_dssp SCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHH---HHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSE
T ss_pred ceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHH---HHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCc
Confidence 99999998 69999999999999998765 22333332 345556788887 899888665 4566787888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|.+
T Consensus 306 T~I 308 (321)
T 2v5h_A 306 TMI 308 (321)
T ss_dssp EEE
T ss_pred eEE
Confidence 753
No 29
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.91 E-value=1.1e-24 Score=211.17 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=147.8
Q ss_pred ceEEEEeCccccCCHH--------HHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 81 LTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 81 ~~~V~KFGGSSv~s~e--------~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
++.|+||||+++.+++ .++++++.|.... +.+++||||++|+..+.+++...
T Consensus 24 ~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~------------------ 85 (286)
T 3d40_A 24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD------------------ 85 (286)
T ss_dssp SEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC---------------------------
T ss_pred CEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC------------------
Confidence 4799999999998864 7888888876542 22257777999998877764211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
.+. ++. +...+.|+-..-..+..+|++.|+++..+.+.+..+
T Consensus 86 -------------~~~---------------------~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~ 127 (286)
T 3d40_A 86 -------------STH---------------------AFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCT 127 (286)
T ss_dssp -------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEE
T ss_pred -------------CCc---------------------ccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCc
Confidence 000 000 011122222222356778999999999998887754
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHH-cCCceEEEeecC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKDV 309 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~a-L~A~~v~i~TDV 309 (387)
+.+ + +.....+.+++ + ++.+.|||++||++.+ .+|++. ++++|++|+.+|.+ |+|++++|||||
T Consensus 128 -t~d--g---~~~~~~~~i~~-l----L~~g~IpVi~gd~~~~-~~g~~~---~~~~D~~Aa~lA~~~l~Ad~LiilTDV 192 (286)
T 3d40_A 128 -LRN--G---IPQLRSEVLRD-V----LDHGALPVLAGDALFD-EHGKLW---AFSSDRVPEVLLPMVEGRLRVVTLTDV 192 (286)
T ss_dssp -EET--T---EEEECCSHHHH-H----HHTTCEEEEECEEEEB-TTSCEE---EECGGGHHHHTTTTCCSCEEEEEEESS
T ss_pred -ccC--C---eEEehHHHHHH-H----HHCcCEEEEcCCeEEc-CCCCEE---eeCHHHHHHHHHHhhCCCCEEEEecCC
Confidence 433 1 22222233433 2 3668999999999887 477754 44599999999999 999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHHHHHHHH--------cCCcccccccccchhHHHHHHhcceEEEeeCCcc---ccccc
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVNISLIVNDDEAEQCVRALHETFFESDLAN---LDCVC 378 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~--------~GakVl~~~~v~~~~~~~~~ra~i~~~i~~~~~~---~~~~~ 378 (387)
||||++||+ ++++|++|+++|+.+|.. ++...|+|++ .++..+.++.++++|.|+..| .++++
T Consensus 193 dGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl---~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t 266 (286)
T 3d40_A 193 DGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKL---DALVTCARRGAECFIMRGDPGSDLEFLTA 266 (286)
T ss_dssp SSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHH---HHHHHHHHTTCEEEEEECCTTCCCGGGGS
T ss_pred CeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHH---HHHHHHHHCCCcEEEEeCCCCCcHHHHhc
Confidence 999999999 999999999998877743 2334454443 456667888999999998775 66666
Q ss_pred c
Q 016545 379 G 379 (387)
Q Consensus 379 g 379 (387)
+
T Consensus 267 ~ 267 (286)
T 3d40_A 267 P 267 (286)
T ss_dssp C
T ss_pred C
Confidence 6
No 30
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.91 E-value=1.1e-23 Score=200.14 Aligned_cols=229 Identities=13% Similarity=0.153 Sum_probs=151.1
Q ss_pred CceEEEEeCccccCCH--------HHHHHHHHHHhcCCCCCcE-EEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHH
Q 016545 80 QLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~--------e~i~~Va~iI~~~~~~~~v-VVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (387)
+++.|.||||+++.++ +.++++++.|.. +.++| +|+++ |...+.+++.
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~~-------------------- 59 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAME-------------------- 59 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHHH--------------------
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHHH--------------------
Confidence 6789999999999875 489999998876 44555 55554 6666654321
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHhhhhhHHHHHHHHHHHHHcCCCeEEecccceee
Q 016545 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (387)
Q Consensus 151 i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Ils~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~i 230 (387)
++++...... + -.++ +..+..+ + .+|+.++ .+|++.|++++++++.++++
T Consensus 60 -----------~gi~~~~~~~--d-----~~gl--------~~t~~~~--~-~ln~~~v-~~l~~~G~~a~~l~~~~~~~ 109 (249)
T 3ll5_A 60 -----------FGLPGPKNPR--S-----SIGY--------SIVHRDM--E-NLDLMVI-DAMIEMGMRPISVPISALRY 109 (249)
T ss_dssp -----------HTCSEECCHH--H-----HHHH--------HHHHHHH--H-HHHHHHH-HHHHHTTCCEEECCGGGSCB
T ss_pred -----------hCCCcCCCcc--c-----cccH--------HHHHHHH--H-HHHHHHH-HHHHHCCCcEEEEcHHHccc
Confidence 2222100000 0 0000 1111112 2 7899888 67899999999999988743
Q ss_pred EeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
.+++ +.+.+++ +++.+.|||++|+++.+ .+|+.++++ +|++|+.+|.+|+|+.+++|||||
T Consensus 110 -------~g~v---~~~~i~~-----ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdvd 170 (249)
T 3ll5_A 110 -------DGRF---DYTPLIR-----YIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDVD 170 (249)
T ss_dssp -------SSSB---CCHHHHH-----HHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESSS
T ss_pred -------ccEE---cHHHHHH-----HHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCCC
Confidence 1233 2233333 24678999999988876 367766666 999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHH----HHhcceEEEeeCCcc---ccccccCCC-
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQC----VRALHETFFESDLAN---LDCVCGSEN- 382 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~----~ra~i~~~i~~~~~~---~~~~~g~~~- 382 (387)
|||++||+.+|+++++++++ ++...+... .....+| .++.+.+ .++.++++|.++..+ .+ +.|+.+
T Consensus 171 Gv~~~dp~~~~~a~~i~~i~-~~~~~~~~~--~~~tGgM--~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~ 244 (249)
T 3ll5_A 171 GIYSKDPKRNPDAVLLRDID-TNITFDRVQ--NDVTGGI--GKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESFI 244 (249)
T ss_dssp SCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTCC
T ss_pred ccCCCCCCCCCCcEEHHHHH-HHHhcccCC--CeeECCH--HHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCCC
Confidence 99999999999999999995 222222111 1222333 3444433 566789999998765 56 889888
Q ss_pred CccC
Q 016545 383 NSSL 386 (387)
Q Consensus 383 g~~~ 386 (387)
||..
T Consensus 245 GT~i 248 (249)
T 3ll5_A 245 GTVI 248 (249)
T ss_dssp SEEE
T ss_pred CEEe
Confidence 9853
No 31
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.90 E-value=1.6e-23 Score=204.06 Aligned_cols=241 Identities=17% Similarity=0.231 Sum_probs=166.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
+++.|.||||+++.+++.+..+++.|.... ....+|+|++.|...+.+++.
T Consensus 26 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~---------------------------- 77 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKR---------------------------- 77 (300)
T ss_dssp TCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHH----------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH----------------------------
Confidence 467999999999999888888888775432 233344555457666655532
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeCC-
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~- 235 (387)
++.+.. +.+++ +..++...|.+ ++.|+. ...+...|++.|++++.+++.+.+++++.+
T Consensus 78 ---~g~~~~-----------~~~g~---rvt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~ 138 (300)
T 2buf_A 78 ---LSIESH-----------FIDGM---RVTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKL 138 (300)
T ss_dssp ---TTCCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEEC
T ss_pred ---cCCCcc-----------ccCCe---ecCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeec
Confidence 111110 00111 11234555554 335776 455667899999999999988877776542
Q ss_pred ----------------CCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHc
Q 016545 236 ----------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKAL 298 (387)
Q Consensus 236 ----------------~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL 298 (387)
++. .++...+.+.+++ +++.+.|||+.+ ++.+ +.|+..+++ +|++|+.+|.+|
T Consensus 139 ~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l 208 (300)
T 2buf_A 139 TVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNM-----LVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEAL 208 (300)
T ss_dssp CCCCC--------CCCCBSBEEEEEECHHHHHH-----HHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHH
T ss_pred cccccchhhcccccccCCcceeEEEECHHHHHH-----HHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHHc
Confidence 322 2332334444433 246789999994 6776 588888887 999999999999
Q ss_pred CCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcC--CcccccccccchhHHHHHHhcce-EEEeeCCcc--
Q 016545 299 GLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVNISLIVNDDEAEQCVRALHE-TFFESDLAN-- 373 (387)
Q Consensus 299 ~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~G--akVl~~~~v~~~~~~~~~ra~i~-~~i~~~~~~-- 373 (387)
+|+.+++||||||||++ ++++|++++++|+.+++..| ...|+|++ .++..+.++.++ ++|.|+..+
T Consensus 209 ~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv---~aa~~a~~~gv~~v~I~~g~~~~~ 279 (300)
T 2buf_A 209 KAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKI---RCALEAVQGGVTSAHIIDGRVPNA 279 (300)
T ss_dssp TCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHH---HHHHHHHHTTCSEEEEEETTSTTH
T ss_pred CCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHH---HHHHHHHHhCCCEEEEeeCCCCch
Confidence 99999999999999987 48899999999999998864 23454443 445566788887 999888665
Q ss_pred --ccccccCCCCccC
Q 016545 374 --LDCVCGSENNSSL 386 (387)
Q Consensus 374 --~~~~~g~~~g~~~ 386 (387)
.++++|+..||-+
T Consensus 280 ll~~~~~~~~~GT~i 294 (300)
T 2buf_A 280 VLLEIFTDSGVGTLI 294 (300)
T ss_dssp HHHHHSSTTCCSEEE
T ss_pred HHHHHhcCCCCceEE
Confidence 4567788888853
No 32
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.89 E-value=2e-23 Score=204.83 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=153.8
Q ss_pred CceEEEEeCccccC--CH--------HHHHHHHHHHhcCC--CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHH
Q 016545 80 QLTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDE 147 (387)
Q Consensus 80 ~~~~V~KFGGSSv~--s~--------e~i~~Va~iI~~~~--~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~ 147 (387)
+++.|+||||+++. +. +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 2 ~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~------------- 68 (314)
T 1e19_A 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ------------- 68 (314)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH-------------
T ss_pred CCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc-------------
Confidence 46799999999999 53 57888888776542 3456666666556666665432110
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHh--hhhh---HHHHHHHHHHHHHcCCCe--
Q 016545 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA-- 220 (387)
Q Consensus 148 l~~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~Il--s~GE---~lSa~Ll~~~L~~~Gi~A-- 220 (387)
.+ + .. +++..+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 ------~~----~--~~-------------------------~~~~l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~~ 110 (314)
T 1e19_A 69 ------AT----Y--GI-------------------------PAQPMDVAGAMSQGWIGYMI-QQALKNELRKRGMEKKV 110 (314)
T ss_dssp ------HH----H--CC-------------------------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCCE
T ss_pred ------cc----C--CC-------------------------ChhHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchhh
Confidence 00 0 00 112223332 2344 56 455667889999987
Q ss_pred ------EEecccce----------eeEeeC-------CC------------CCce-----ecccchHHHHHHHhhcccCC
Q 016545 221 ------RQYDAFDI----------GFITTD-------DF------------TNAD-----ILEATYPAVAKRLHGDWITD 260 (387)
Q Consensus 221 ------~~ld~~d~----------~iit~~-------~~------------~~a~-----i~~~~~~~i~~~l~~~l~~~ 260 (387)
+.+++.|. ++++.+ ++ .++. +...+.+.++ .+++.
T Consensus 111 ~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~-----~lL~~ 185 (314)
T 1e19_A 111 VTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIK-----KLVER 185 (314)
T ss_dssp EEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHH-----HHHHT
T ss_pred hhhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHH-----HHHHC
Confidence 56676662 233210 01 1110 1122333333 23467
Q ss_pred CcEEEEcCCccccC-CCCceeeeCC---CcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHH
Q 016545 261 LAIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE 336 (387)
Q Consensus 261 ~~IpVv~Gfig~~~-~~G~~ttLgR---GGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~e 336 (387)
+.|||++||.|... .+... ++|+ +++|++|+.+|.+|+|+.+++||||||||++|| .|++++|++|+++|+.+
T Consensus 186 g~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~ 262 (314)
T 1e19_A 186 GVIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRK 262 (314)
T ss_dssp TCEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHH
T ss_pred CCEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHH
Confidence 89999998644320 01122 4665 889999999999999999999999999999999 49999999999999999
Q ss_pred HHHcCCcccc-cccccchhHH----HHHHhcceEEEeeCCccccccccCCCCccC
Q 016545 337 LAYFGAQVNI-SLIVNDDEAE----QCVRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 337 La~~GakVl~-~~~v~~~~~~----~~~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
++..| .++ .+| .++.. .+.+..++++|.+.....++++| ..||.+
T Consensus 263 ~~~~g--~~~~GgM--~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i 312 (314)
T 1e19_A 263 YYEEG--HFKAGSM--GPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQV 312 (314)
T ss_dssp HHHTT--CSCTTTH--HHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEE
T ss_pred HHhCC--CcCCCCh--HHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEE
Confidence 98865 332 223 23333 35667889999875333566677 468753
No 33
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.86 E-value=6.3e-22 Score=191.44 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCC-----CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC 277 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~-----~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G 277 (387)
+|.. +.+.|++.|++++.+++.+.++++.+++ ++ +++...+.+.+++. ++.+.|||++| ++.+ ++|
T Consensus 115 ln~~-i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~l-----L~~g~IPVi~~-v~~~-~~G 186 (279)
T 3l86_A 115 VGKN-LQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEF-----LENRQIPILAS-LGYS-KEG 186 (279)
T ss_dssp THHH-HHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHH-----HHTTCEEEEES-EEEC-TTS
T ss_pred HHHH-HHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHH-----HhCCcEEEECC-cEEC-CCC
Confidence 3555 4567999999999999999989998743 44 55655555555442 36689999998 8887 588
Q ss_pred ceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHH-
Q 016545 278 AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAE- 356 (387)
Q Consensus 278 ~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~- 356 (387)
+..+++ +|++|+.+|.+|+|++++|||||||||+ ++++|++++++|+.+|+..| ....+| .++.+
T Consensus 187 ~~~~i~---~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~--~~tGGM--~~Kl~a 252 (279)
T 3l86_A 187 DMLNIN---ADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTA--VITAGM--IPKIES 252 (279)
T ss_dssp CEEECC---HHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTT--SSCTTH--HHHHHH
T ss_pred CEeecC---HHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCC--CCcCcH--HHHHHH
Confidence 999887 9999999999999999999999999994 57899999999999999765 334444 24444
Q ss_pred --HHHHhcce-EEEeeCCcc
Q 016545 357 --QCVRALHE-TFFESDLAN 373 (387)
Q Consensus 357 --~~~ra~i~-~~i~~~~~~ 373 (387)
.+.++.++ +.|.++..+
T Consensus 253 a~~a~~~Gv~~v~I~~~~~~ 272 (279)
T 3l86_A 253 AAKTVAAGVGQVLIGDNLLT 272 (279)
T ss_dssp HHHHHHTTCSEEEEESSSSC
T ss_pred HHHHHHcCCCEEEEeccCCC
Confidence 45566775 888888544
No 34
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.86 E-value=3.2e-21 Score=185.10 Aligned_cols=158 Identities=12% Similarity=0.104 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeee
Q 016545 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 203 ~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
.+|+.+ .++|++.|++++++++.++++.+++. ..+.+.++. +++.+.|||++||++.+ .+|++.++
T Consensus 98 ~ln~~l-~~~l~~~G~~a~~l~~~d~~~~~~g~-------~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~g~~~~~ 163 (266)
T 3k4o_A 98 RFNNII-IDTLQSYDIPAVSIQPSSFVVFGDKL-------IFDTSAIKE-----MLKRNLVPVIHGDIVID-DKNGYRII 163 (266)
T ss_dssp HHHHHH-HHHHHTTTCCEEEECGGGTCEESSSC-------BCCCHHHHH-----HHHTTCEEEEECEEEEE-SSSCEEEE
T ss_pred HHHHHH-HHHHHHCCCcEEEeeHHHcCcccCce-------EecHHHHHH-----HHHCCCEEEEeCCEEEc-CCCCeeee
Confidence 478885 57899999999999999987665321 122233333 23668999999999887 46776655
Q ss_pred CCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHHHHHHHHc----CCcccccccccchhHHHH
Q 016545 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF----GAQVNISLIVNDDEAEQC 358 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~----GakVl~~~~v~~~~~~~~ 358 (387)
+ +|++|+.+|.+|+|+++++|||||||| +||++ +++++.+|+.++... +......+| .++...+
T Consensus 164 ~---~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM--~~Kv~aa 231 (266)
T 3k4o_A 164 S---GDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGM--KYKIEMI 231 (266)
T ss_dssp C---HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHH--HHHHHHH
T ss_pred C---HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCH--HHHHHHH
Confidence 5 999999999999999999999999999 88865 666665555555432 123334444 4677777
Q ss_pred HHhcceEEEeeCCcc---ccccccCCCCccC
Q 016545 359 VRALHETFFESDLAN---LDCVCGSENNSSL 386 (387)
Q Consensus 359 ~ra~i~~~i~~~~~~---~~~~~g~~~g~~~ 386 (387)
.++.-+++|.++..+ .++++|+.+||.+
T Consensus 232 ~~a~~~v~I~~g~~~~~l~~~l~g~~~GT~i 262 (266)
T 3k4o_A 232 RKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262 (266)
T ss_dssp HHTTCEEEEEETTSTTHHHHHHTTCCCSEEE
T ss_pred HHHhcCEEEEeCCCccHHHHHhCCCCCceEE
Confidence 666669999998765 6788899899853
No 35
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.85 E-value=1.3e-21 Score=191.54 Aligned_cols=236 Identities=17% Similarity=0.268 Sum_probs=164.2
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHH
Q 016545 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~ 156 (387)
++.+.|+||||+.+.+ .++++++-|... .+.++| ||.++|...+.+++.
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~V-vVHGgG~~i~~~l~~-------------------------- 97 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPI-VLHGTGPQVNGRLEA-------------------------- 97 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEE-EEECCHHHHHHHHHH--------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHHH--------------------------
Confidence 5678999999976643 367787766543 244655 555557666666542
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC-
Q 016545 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (387)
Q Consensus 157 ~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~- 234 (387)
++.++ ++.+|+++ .+++..|.+ +.+| .+|..|+ ..|++.|++|+++++ ++++.+
T Consensus 98 -----~gi~~-----------~~~~G~Rv---Td~~~l~vv~m~~~-~vn~~lv-~~L~~~G~~Av~l~g---g~~~a~~ 153 (307)
T 3zzh_A 98 -----QGIEP-----------DYIDGIRI---TDEHTMAVVRKCFL-EQNLKLV-TALEQLGVRARPITS---GVFTADY 153 (307)
T ss_dssp -----TTCCC-----------CEETTEEC---BCHHHHHHHHHHHH-HHHHHHH-HHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeec---CCHHHHHHHHHHHH-HHHHHHH-HHHHhCCCCeeEEcC---CcEEEEe
Confidence 22222 12233333 345667766 4667 5788875 579999999999986 345554
Q ss_pred ----CCC-CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecC
Q 016545 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (387)
Q Consensus 235 ----~~~-~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDV 309 (387)
+|+ .+++...+.+.++..| +.+.|||++|+ +.+ .+|++++++ +|.+|+.+|.+|+|++++++|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~lL-----~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEASI-----KAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHHHH-----HHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHHHH-----HCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 344 3667666666665533 56899999996 776 479999997 99999999999999999999999
Q ss_pred CcccccCCCCCCCCccccccCHHH-HHHHHHcCCcccccccccchh---HHHHHHh---cceEEEeeCCcc-ccccccCC
Q 016545 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFGAQVNISLIVNDDE---AEQCVRA---LHETFFESDLAN-LDCVCGSE 381 (387)
Q Consensus 310 dGV~taDPr~v~~Ak~I~~Lsy~E-A~eLa~~GakVl~~~~v~~~~---~~~~~ra---~i~~~i~~~~~~-~~~~~g~~ 381 (387)
||||++ |++++|++++++| +.+|...| ....+| .++ ++.|.++ .+++.|.+.... .++.+++.
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~--~~tGGM--~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g 294 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQS--WVKYGT--KLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSG 294 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTST--TSCHHH--HHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCC
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhCC--CCCCcH--HHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCC
Confidence 999986 6899999999976 67777643 333444 244 3356555 678888884333 45567888
Q ss_pred CCccC
Q 016545 382 NNSSL 386 (387)
Q Consensus 382 ~g~~~ 386 (387)
+||.+
T Consensus 295 ~GT~I 299 (307)
T 3zzh_A 295 AGTMI 299 (307)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 88854
No 36
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.84 E-value=2e-20 Score=183.06 Aligned_cols=122 Identities=16% Similarity=0.090 Sum_probs=91.2
Q ss_pred cCCCcEEEEcCCccccC----CCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHHH
Q 016545 258 ITDLAIPIVTGFLGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333 (387)
Q Consensus 258 ~~~~~IpVv~Gfig~~~----~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~E 333 (387)
++.+.|||+.||.|... ..|+..+++ +|++|+.+|.+|+|+.++++|||||||+ || .+|++++|++++++|
T Consensus 179 L~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~---~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~e 253 (310)
T 2we5_A 179 IKNDIITISCGGGGIPVVGQELKGVEAVID---KDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVAE 253 (310)
T ss_dssp HHTTCEEECCGGGCEEEETTTTEECCCCCC---HHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHHH
T ss_pred HHCCCEEEEECCCCCCCcCCCCCCcEeecC---HHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHHH
Confidence 46789999998866431 134444455 9999999999999999999999999999 89 489999999999999
Q ss_pred HHHHHHcCCcccc-ccccc-chhHHHHHHhcc--eEEEeeCCccccccccCCCCccC
Q 016545 334 AAELAYFGAQVNI-SLIVN-DDEAEQCVRALH--ETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 334 A~eLa~~GakVl~-~~~v~-~~~~~~~~ra~i--~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
+.+++..|. +. .+|.. -.++..+.++.+ +++|.+-....++++|+..||.+
T Consensus 254 ~~~~~~~g~--~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i 308 (310)
T 2we5_A 254 LEEYKQAGH--FAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVV 308 (310)
T ss_dssp HHHHHHTTC--SCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEE
T ss_pred HHHHhhCCC--CCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEE
Confidence 999987652 32 22311 123444566666 88888732236788898889854
No 37
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.84 E-value=6.5e-21 Score=187.10 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=152.6
Q ss_pred CCceEEEEeCccccC--CH--------HHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHH
Q 016545 79 KQLTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDE 147 (387)
Q Consensus 79 ~~~~~V~KFGGSSv~--s~--------e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~ 147 (387)
++++.|.||||+++. +. +.++++++.|.... ....+|+||++|...+.+++....
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~-------------- 68 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEA-------------- 68 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHT--------------
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCC--------------
Confidence 346799999999998 64 68888888776542 334577788888877766542110
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH--hhhhh---HHHHHHHHHHHHHcCCCe--
Q 016545 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGE---CMSTRIFAAYLNKIGVKA-- 220 (387)
Q Consensus 148 l~~i~~~h~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I--ls~GE---~lSa~Ll~~~L~~~Gi~A-- 220 (387)
.. +..++...|.+ .+.|+ .|+. .+...|.+.|+++
T Consensus 69 -----------------~~--------------------~~t~~~~l~~~~~~~~G~i~~~l~~-~l~~~l~~~g~~a~~ 110 (316)
T 2e9y_A 69 -----------------LP--------------------PERPRQPLYIATAMTQAWIGLLLKH-SLEEELRRRGLNVLV 110 (316)
T ss_dssp -----------------SC--------------------TTSCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCCCC
T ss_pred -----------------CC--------------------CCCCHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhcCCCccc
Confidence 00 00112223332 22333 5664 5667899999998
Q ss_pred ------EEeccccee----------eEee---------CCC---CC-----------ce-ecccchHHHHHHHhhcccCC
Q 016545 221 ------RQYDAFDIG----------FITT---------DDF---TN-----------AD-ILEATYPAVAKRLHGDWITD 260 (387)
Q Consensus 221 ------~~ld~~d~~----------iit~---------~~~---~~-----------a~-i~~~~~~~i~~~l~~~l~~~ 260 (387)
+.+++.|.. +++. ..| ++ +. +...+.+.+++ +++.
T Consensus 111 ~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~~-----lL~~ 185 (316)
T 2e9y_A 111 PVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAE-----ASAE 185 (316)
T ss_dssp CEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHHH-----HHHH
T ss_pred cceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHHH-----HHHC
Confidence 788877742 2210 001 11 00 11123333432 2456
Q ss_pred CcEEEEcCCccc----cCCCCc----eeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 261 LAIPIVTGFLGK----AWRTCA----ITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 261 ~~IpVv~Gfig~----~~~~G~----~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
+.|||+.|+.|. + ++|. ..++ .+|++|+.+|.+|+|+.++|+|||||||+ ||+ .|++++|++++++
T Consensus 186 g~IpI~~g~~g~pv~~~-~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~ 259 (316)
T 2e9y_A 186 SPAVVALGGGGVPVVER-PGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAAS 259 (316)
T ss_dssp CSEEEECGGGCEEEEEC-TTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHH
T ss_pred CCEEEEECCCCCCeeEC-CCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHH
Confidence 899999986543 3 3452 2223 49999999999999999999999999999 895 7999999999999
Q ss_pred HHHHHHHcCC---cccccccccchhHHHHHHhcc-eEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGA---QVNISLIVNDDEAEQCVRALH-ETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~Ga---kVl~~~~v~~~~~~~~~ra~i-~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.+++..|. --|.|++ .++..+.++.+ +++|.+-....++++| ..||.+
T Consensus 260 e~~~~~~~g~~~~GgM~~Kv---~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i 313 (316)
T 2e9y_A 260 ELKKYLREGHFPPGSMGPKV---EAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVV 313 (316)
T ss_dssp HHHHHHHTTCSCTTTHHHHH---HHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEE
T ss_pred HHHHHHhcCCCCCCCHHHHH---HHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEE
Confidence 9999987542 1122222 23334455556 8888873222566777 678753
No 38
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.84 E-value=7e-21 Score=194.50 Aligned_cols=239 Identities=16% Similarity=0.099 Sum_probs=159.9
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcCC-CCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~~-~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 158 (387)
++++|.||||+++.+++ +.++++.|.... ....+|+|+++|..++.+++.
T Consensus 43 ~~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~---------------------------- 93 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAA---------------------------- 93 (456)
T ss_dssp TCEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTT----------------------------
T ss_pred CCEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH----------------------------
Confidence 46799999999999866 778887765432 234466677777766655432
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCe----EEecccceeeEee
Q 016545 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITT 233 (387)
Q Consensus 159 ~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A----~~ld~~d~~iit~ 233 (387)
++... ++.+++ +-.++...+.+ .+.| .++..+. +.|+ .|+++ +.+++.+.++++.
T Consensus 94 ---~~~~~-----------~~~~g~---r~t~~~~l~~~~~~~G-~~~~~l~-~~l~-~g~~~~~~~~~l~~~~~~~~~~ 153 (456)
T 3d2m_A 94 ---QGRTP-----------HYCRGL---RVTDETSLGQAQQFAG-TVRSRFE-AALC-GSVSGFARAPSVPLVSGNFLTA 153 (456)
T ss_dssp ---TTCCC-----------CCGGGC---CCBCHHHHHHHHHHHH-HHHHHHH-HHHH-TC--------CCCEECCSCEEE
T ss_pred ---CCCCC-----------EeeCCe---ecCCHHHHHHHHHHHh-HHHHHHH-HHHh-cccccCCCccceeeccCcEEEE
Confidence 11111 000111 11234455554 3345 5676665 4777 89998 8888888777876
Q ss_pred CCC--------CC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEE
Q 016545 234 DDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (387)
Q Consensus 234 ~~~--------~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~ 304 (387)
... +. +++...+.+.+++ +++.+.|||+.++ +.+ .+|++.+++ +|++|+.+|.+|+|+.++
T Consensus 154 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li 223 (456)
T 3d2m_A 154 RPIGVIDGTDMEYAGVIRKTDTAALRF-----QLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLV 223 (456)
T ss_dssp EECCEETTEECBTBEEEEEECHHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEE
T ss_pred EEcccccCcccCceeeEEEECHHHHHH-----HHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 533 22 3343444444443 2467899999985 666 489999887 999999999999999999
Q ss_pred EeecCCcccccCCCCCCCCccccccCHHHHHHHHHcCCcccccccccchhHHHHHHhcc-eEEEeeCCcc----cccccc
Q 016545 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVNISLIVNDDEAEQCVRALH-ETFFESDLAN----LDCVCG 379 (387)
Q Consensus 305 i~TDVdGV~taDPr~v~~Ak~I~~Lsy~EA~eLa~~GakVl~~~~v~~~~~~~~~ra~i-~~~i~~~~~~----~~~~~g 379 (387)
|+|||||||++ ++++|++++++|+.+++..|...|.|++ .++..+.++.+ +++|.+...+ .++++|
T Consensus 224 ~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl---~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~ 294 (456)
T 3d2m_A 224 YLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLI---SSAVAALEGGVHRVQILNGAADGSLLQELFTR 294 (456)
T ss_dssp EEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHH---HHHHHHHHTTCSEEEEEETTSTTHHHHHHHCS
T ss_pred EEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHH---HHHHHHHHhCCCEEEEecCcCCchHHHHHHhh
Confidence 99999999986 6889999999999999887753343332 34445566666 5999998665 334567
Q ss_pred CCCCccC
Q 016545 380 SENNSSL 386 (387)
Q Consensus 380 ~~~g~~~ 386 (387)
+..||-+
T Consensus 295 ~~~GT~i 301 (456)
T 3d2m_A 295 NGIGTSI 301 (456)
T ss_dssp SCSSEEE
T ss_pred cCCceee
Confidence 8888753
No 39
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.84 E-value=8.4e-21 Score=194.87 Aligned_cols=235 Identities=18% Similarity=0.267 Sum_probs=164.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Q 016545 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (387)
Q Consensus 80 ~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~ 157 (387)
+.+.|+|+||+.+.+ .++++++-|... .+.++| ||+++|...+.+++.
T Consensus 48 ~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~V-vVHGgG~~i~~~l~~--------------------------- 97 (464)
T 4ab7_A 48 QQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPI-VLHGTGPQVNGRLEA--------------------------- 97 (464)
T ss_dssp -CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCE-EEECCCHHHHHHHHH---------------------------
T ss_pred CceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEE-EEECCcHHHHHHHHH---------------------------
Confidence 578999999997753 367777766532 244654 566778777776642
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccceeeEeeC--
Q 016545 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (387)
Q Consensus 158 ~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (387)
+++++ ++.+|+++ .++.+++.+ +.+| .+|..|+ ..|++.|++|+++++ ++++.+
T Consensus 98 ----~gi~~-----------~f~~G~Rv---Td~~tl~vv~mv~~-~vn~~lv-~~L~~~G~~Avglsg---g~~~a~~~ 154 (464)
T 4ab7_A 98 ----QGIEP-----------DYIDGIRI---TDEHTMAVVRKCFL-EQNLKLV-TALEQLGVRARPITS---GVFTADYL 154 (464)
T ss_dssp ----TTCCC-----------CEETTEEC---BCHHHHHHHHHHHH-HHHHHHH-HHHHHTTCCEEEECS---SSEEEEES
T ss_pred ----cCCCc-----------cccCCeec---CCHHHHHHHHHHHH-HHHHHHH-HHHHhCCCCeEEECC---CcEEEEec
Confidence 23322 12234333 344556655 3567 5787765 579999999999986 355554
Q ss_pred ---CCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCC
Q 016545 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (387)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVd 310 (387)
+++. ++|...+.+.++.. ++.+.|||++|+ |.+ .+|++++++ +|.+|+.+|.+|+|++++++||||
T Consensus 155 ~~~d~g~vG~I~~v~~~~I~~l-----L~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV~ 224 (464)
T 4ab7_A 155 DKDKYKLVGNIKSVTKEPIEAS-----IKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEKG 224 (464)
T ss_dssp CTTTTBSBEEEEEECCHHHHHH-----HHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESSC
T ss_pred CccccCCcCcccccCHHHHHHH-----HHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEeccc
Confidence 3553 67766666666543 356899999995 776 489999997 999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCHHH-HHHHHHcCCcccccccccchh---HHHHHHh---cceEEEeeCCcc-ccccccCCC
Q 016545 311 GVLTCDPNIHPHAKPVPYLTFDE-AAELAYFGAQVNISLIVNDDE---AEQCVRA---LHETFFESDLAN-LDCVCGSEN 382 (387)
Q Consensus 311 GV~taDPr~v~~Ak~I~~Lsy~E-A~eLa~~GakVl~~~~v~~~~---~~~~~ra---~i~~~i~~~~~~-~~~~~g~~~ 382 (387)
|||++ |++++|++|+++| +.+|...| .+.++| .++ ++.|.++ .+.+.|.+.... .++.+++.+
T Consensus 225 GV~~~-----~~~~lI~~it~~e~~~~li~~~--~~tgGM--~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~ 295 (464)
T 4ab7_A 225 GIING-----STGEKISMINLDEEYDDLMKQS--WVKYGT--KLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGA 295 (464)
T ss_dssp SEECT-----TTCCEECEEEHHHHHHHHHTCS--SCCHHH--HHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTT
T ss_pred ccccC-----CCCcCCcccCHHHHHHHHHhcC--CCCCcH--HHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCC
Confidence 99986 5899999999986 56677643 334444 244 4466654 678889886554 466678888
Q ss_pred CccC
Q 016545 383 NSSL 386 (387)
Q Consensus 383 g~~~ 386 (387)
||.+
T Consensus 296 GT~I 299 (464)
T 4ab7_A 296 GTMI 299 (464)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 8854
No 40
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.80 E-value=1.3e-19 Score=186.22 Aligned_cols=239 Identities=12% Similarity=0.141 Sum_probs=160.8
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHH
Q 016545 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (387)
Q Consensus 78 ~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h 155 (387)
..+++.|+||||+.+. +.++++++.|... .+.++|||++| |...+.+++.
T Consensus 56 ~~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGg-G~~i~~~l~~------------------------- 107 (460)
T 3s6g_A 56 DQERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGG-GPQLDAALEA------------------------- 107 (460)
T ss_dssp CGGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECC-HHHHHHHHHH-------------------------
T ss_pred CCCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECC-ChHHHHHHHH-------------------------
Confidence 3468899999998543 3467888777543 24577767655 5544444431
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccce--eeEe
Q 016545 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFIT 232 (387)
Q Consensus 156 ~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~--~iit 232 (387)
++.+. ++.+|++++ +++..+.+ +.+| .+|..|++ .|++.|++|+++.+..+ ..++
T Consensus 108 ------~gi~~-----------~f~~G~RvT---d~~~l~vv~~~lg-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~ 165 (460)
T 3s6g_A 108 ------ADIPT-----------ERVDGLRVT---RDEAMPIIRDTLT-QANLALVD-AIRDAGGRAAAVPRGVFEADIVD 165 (460)
T ss_dssp ------HSCCC-----------CCCSSSCCB---CTTTHHHHHHHHH-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESC
T ss_pred ------cCCCc-----------cccCCccCC---CHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEecCeEEEEEec
Confidence 22222 122233333 33445544 3457 88988886 79999999999987432 1112
Q ss_pred eCCCCC-ceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 233 TDDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 233 ~~~~~~-a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
..+|+. ++|...+.+.++..| +.+.|||++++ |.+ .+|+..+++ +|.+|+.+|.+|+|++++++|||||
T Consensus 166 ~~d~g~~G~I~~v~~~~i~~lL-----~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~G 235 (460)
T 3s6g_A 166 ADKLGRVGEPRHIHLDLVGSAA-----RAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGG 235 (460)
T ss_dssp TTTTBSEEEEEEECCHHHHHHH-----HTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCS
T ss_pred CcccCccCcceEEcHHHHHHHH-----HCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 235553 677666666665533 56899999984 766 589999998 9999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHH-HHHHHHHcCCcccccccccchhHH---HHHHhcceEEEeeCCcc----ccccccCCCC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFD-EAAELAYFGAQVNISLIVNDDEAE---QCVRALHETFFESDLAN----LDCVCGSENN 383 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~-EA~eLa~~GakVl~~~~v~~~~~~---~~~ra~i~~~i~~~~~~----~~~~~g~~~g 383 (387)
||+. ++++|++|+.+ |+.+|...| ....+| .++.+ .+.+.+.++.+.+...+ .++.+++.+|
T Consensus 236 v~~~------~~~lI~~i~~~~e~~~l~~~~--~~tGGM--~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~G 305 (460)
T 3s6g_A 236 LLDE------DGDILSSINLATDFGDLMQAD--WVNGGM--RLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSG 305 (460)
T ss_dssp CBCT------TSSBCCEEEHHHHHHHHHHCS--SSCHHH--HHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSS
T ss_pred ccCC------CCeecceeCcHHHHHHHHhcC--CCCCcH--HHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCc
Confidence 9974 57899999996 888888754 334444 24444 44555545566666554 2456677888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|-+
T Consensus 306 T~i 308 (460)
T 3s6g_A 306 TLI 308 (460)
T ss_dssp EEE
T ss_pred eEE
Confidence 753
No 41
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.71 E-value=5.1e-19 Score=181.94 Aligned_cols=239 Identities=16% Similarity=0.241 Sum_probs=158.4
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhcC--CCCCcEEEEcCCCcCchHHHHHhHHHhhcCCCCcchhHHHHHHHHHH
Q 016545 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (387)
Q Consensus 78 ~~~~~~V~KFGGSSv~s~e~i~~Va~iI~~~--~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h 155 (387)
+.+.+.|+||||+.+.+ .++.+++.|... .+.++|||++| |..++.+++.
T Consensus 59 ~~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGg-g~~i~~~l~~------------------------- 110 (467)
T 3s6k_A 59 DAKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGA-GPQLDAELSA------------------------- 110 (467)
T ss_dssp CSTTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCC-CHHHHHHHHT-------------------------
T ss_pred CCCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECC-ChHHHHHHHH-------------------------
Confidence 44678999999996554 367777766532 24566666655 5555555432
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH-hhhhhHHHHHHHHHHHHHcCCCeEEecccce--eeEe
Q 016545 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFIT 232 (387)
Q Consensus 156 ~~~~~~L~~~~~~I~~~~~~L~~ll~gi~~~~e~~~~~~d~I-ls~GE~lSa~Ll~~~L~~~Gi~A~~ld~~d~--~iit 232 (387)
++.+. ++.+|+++ .+++.++.+ +.+| .+|..|++ .|++.|++|+++.+..+ ..++
T Consensus 111 ------~gi~~-----------~f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~ 168 (467)
T 3s6k_A 111 ------AGIEK-----------QTVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLN 168 (467)
T ss_dssp ------TSCCC-----------CCCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred ------cCCCc-----------cccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence 22221 11122222 344566665 3567 88998887 79999999999987432 2222
Q ss_pred eCCCC-CceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCc
Q 016545 233 TDDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (387)
Q Consensus 233 ~~~~~-~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdG 311 (387)
..+|+ .++|...+.+.++.. ++.+.|||+.+ +|.+ .+|+.++++ +|.+|+.+|.+|+|++++++|||||
T Consensus 169 ~~d~g~~G~I~~v~~~~i~~l-----L~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~G 238 (467)
T 3s6k_A 169 RDTYGLVGEVKAVNLAPIEAS-----LQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGG 238 (467)
T ss_dssp SSSSBSBBCCCCBCCHHHHTH-----HHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCS
T ss_pred CcccCccceEEEEcHHHHHHH-----HHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccc
Confidence 33565 367766666656543 35689999984 4445 478888887 9999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCHH-HHHHHHHcCCcccccccccchhHHH---HHHhcceEEEeeCCcc----ccccccCCCC
Q 016545 312 VLTCDPNIHPHAKPVPYLTFD-EAAELAYFGAQVNISLIVNDDEAEQ---CVRALHETFFESDLAN----LDCVCGSENN 383 (387)
Q Consensus 312 V~taDPr~v~~Ak~I~~Lsy~-EA~eLa~~GakVl~~~~v~~~~~~~---~~ra~i~~~i~~~~~~----~~~~~g~~~g 383 (387)
||+. ++++|++|+.. |+.+|...| ....+| .++.+. +.+.+.++.+.+...+ .++.+++.+|
T Consensus 239 v~~~------~~~lI~~i~~~~e~~~l~~~~--~~tGGM--~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~G 308 (467)
T 3s6k_A 239 LLDA------EGKLIDSINLSTEYDHLMQQP--WINGGM--RVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSG 308 (467)
T ss_dssp CCCS------SCCCCCCCCTTTTTHHHHTSS--SCCSHH--HHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTS
T ss_pred eeCC------CCCCccccChHHHHHHHHhcC--CCCCch--HHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcc
Confidence 9985 47789999985 788887643 334444 344444 4554445566666555 2455677888
Q ss_pred ccC
Q 016545 384 SSL 386 (387)
Q Consensus 384 ~~~ 386 (387)
|-+
T Consensus 309 T~i 311 (467)
T 3s6k_A 309 TLV 311 (467)
T ss_dssp CCB
T ss_pred eEE
Confidence 864
No 42
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.64 E-value=8e-16 Score=151.98 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=86.0
Q ss_pred cCCCcEEEEcCCcc--ccC----CCCceeeeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCH
Q 016545 258 ITDLAIPIVTGFLG--KAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (387)
Q Consensus 258 ~~~~~IpVv~Gfig--~~~----~~G~~ttLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy 331 (387)
.+.+.|||..|.-+ ... .+|...+.+ .|++|+.||.+|+|+.++|+|||||||+.+|+ |++++|+++|.
T Consensus 200 ~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid---~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~it~ 274 (332)
T 4axs_A 200 VNNGCVCIVGGGGGIPTIIQDNQYIGVDGVID---KDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTVDV 274 (332)
T ss_dssp HHTTCEEECCGGGCEEEEESSSCEEECSSCCC---HHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSCBH
T ss_pred hcCCeEEEecccCCCCccccCCcccCceeeec---hHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccCCH
Confidence 45677776644211 100 123333444 89999999999999999999999999998886 89999999999
Q ss_pred HHHHHHHHcCCcccccccccchhHHHHHHh-----cceEEEeeCCccccccccCCCCccC
Q 016545 332 DEAAELAYFGAQVNISLIVNDDEAEQCVRA-----LHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 332 ~EA~eLa~~GakVl~~~~v~~~~~~~~~ra-----~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
+|+.++...|. +-..+| .|+.++|+++ ...++|++-....+++.|+ .||..
T Consensus 275 ~e~~~~~~~g~-~~~GgM--~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~-~GT~I 330 (332)
T 4axs_A 275 KALNNFINQDQ-FAKGSM--LPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGL-SGTKI 330 (332)
T ss_dssp HHHHHHHHTTC-SCTTTT--HHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTS-SSEEE
T ss_pred HHHHHHHHCCC-cCcCCc--HHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCC-CCcEE
Confidence 99999998662 212234 4777776554 3467887655557788886 59864
No 43
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.52 E-value=8.6e-14 Score=136.21 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=92.9
Q ss_pred cccCCCcEEEEcCCccccC--CCCcee-eeCCCcchhHHHHHHHHcCCceEEEeecCCcccccCCCCCCCCccccccCHH
Q 016545 256 DWITDLAIPIVTGFLGKAW--RTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (387)
Q Consensus 256 ~l~~~~~IpVv~Gfig~~~--~~G~~t-tLgRGGSD~tAa~LA~aL~A~~v~i~TDVdGV~taDPr~v~~Ak~I~~Lsy~ 332 (387)
.|++.+.|||++||.|... .++..+ +...+.+|++|+.+|.+|+|+.++|+|||||||+ ||+ .|++++|++++++
T Consensus 183 ~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it~~ 260 (317)
T 3kzf_A 183 TLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIKLS 260 (317)
T ss_dssp HHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEEHH
T ss_pred HHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcCHH
Confidence 3456789999998777621 123233 3345669999999999999999999999999999 999 5999999999999
Q ss_pred HHHHHHHcCCcccccccccchhHHHH----HHhcceEEEeeCCccccccccCCCCccC
Q 016545 333 EAAELAYFGAQVNISLIVNDDEAEQC----VRALHETFFESDLANLDCVCGSENNSSL 386 (387)
Q Consensus 333 EA~eLa~~GakVl~~~~v~~~~~~~~----~ra~i~~~i~~~~~~~~~~~g~~~g~~~ 386 (387)
|+.+++..|. .-...| .++.+.| .+.+.+++|.+.....+++.|+ .||.+
T Consensus 261 e~~~li~~g~-~~~GGM--~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~-~GT~I 314 (317)
T 3kzf_A 261 EILALEKDGH-FAAGSM--GPKVRAAIEFTQATGKMSIITSLSTAVDALNGK-CGTRI 314 (317)
T ss_dssp HHHHHHTTTS-CC--CC--HHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTS-SSEEE
T ss_pred HHHHHHhcCC-CCCCCH--HHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCC-CCeEE
Confidence 9999986441 111233 3454443 4457789999976567788887 68854
No 44
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=79.29 E-value=4.6 Score=35.65 Aligned_cols=74 Identities=14% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+..+++.|++.|+....+ .++-| +.+.+.+.+... .+...+.|++|.+|.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a-~~~~DlVittGG~g~~~--------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRG-----FVVMD-----------DLDEIGWAFRVA-LEVSDLVVSSGGLGPTF--------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HHHCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCCc---------
Confidence 47788899999999987654 12322 234555555432 34467999999787763
Q ss_pred CCcchhHHHHHHHHcCCceEEEee
Q 016545 284 RGGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~A~~v~i~T 307 (387)
-|+|.-.++.+++. ++.++-
T Consensus 77 ---~D~T~ea~a~~~~~-~l~~~~ 96 (172)
T 3kbq_A 77 ---DDMTVEGFAKCIGQ-DLRIDE 96 (172)
T ss_dssp ---TCCHHHHHHHHHTC-CCEECH
T ss_pred ---ccchHHHHHHHcCC-CeeeCH
Confidence 69999999999995 444433
No 45
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=69.89 E-value=9.2 Score=33.32 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC-CCcEEEEcCCccccCCCCceeee
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTL 282 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~IpVv~Gfig~~~~~G~~ttL 282 (387)
-|+..+++.|++.|+..... .++-| +.+.+.+.+...+.. ...+.|++|..|.+.
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a~~~~~~DlVittGG~g~~~-------- 83 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDK-----AIVKE-----------NRYAIRAQVSAWIASDDVQVVLITGGTGLTE-------- 83 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHHHHSSSCCEEEEESCCSSST--------
T ss_pred ccHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC--------
Confidence 47788899999999876553 13322 234555555433222 367899999787762
Q ss_pred CCCcchhHHHHHHHHcC
Q 016545 283 GRGGSDLTATTIGKALG 299 (387)
Q Consensus 283 gRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 84 ----~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 84 ----GDQAPEALLPLFD 96 (172)
T ss_dssp ----TCCHHHHHGGGCS
T ss_pred ----CCCHHHHHHHHhc
Confidence 6888888888775
No 46
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=64.70 E-value=10 Score=32.65 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC-CCcEEEEcCCccccCCCCceeeeC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
|+..+++.|++.|+..... .++-| +.+.+++.+...+.. ...+.|++|..|.+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~--------- 76 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVPD-----------EPPMIKKVLRLWADREGLDLILTNGGTGLAP--------- 76 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEECS-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST---------
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcCC-----------CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC---------
Confidence 7778889999999866543 12322 234566666443221 467999999777652
Q ss_pred CCcchhHHHHHHHHcC
Q 016545 284 RGGSDLTATTIGKALG 299 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 77 ---~D~t~ea~~~~~~ 89 (164)
T 2is8_A 77 ---RDRTPEATRELLD 89 (164)
T ss_dssp ---TCCHHHHHHTTCS
T ss_pred ---CCChHHHHHHHhC
Confidence 6899888887764
No 47
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=64.31 E-value=15 Score=31.83 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC--CCcEEEEcCCccccCCCCceee
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~--~~~IpVv~Gfig~~~~~G~~tt 281 (387)
-|+..+++.|++.|+..... +++-| +.+.+++.+... .+ ...+.|++|..|.+.
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~------- 86 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD-----------DKESIQQAVLAG-YHKEDVDVVLTNGGTGITK------- 86 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS-----------SHHHHHHHHHHH-HTCTTCSEEEEECCCSSST-------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC-------
Confidence 47788889999999876553 23322 234566666443 34 567999999787662
Q ss_pred eCCCcchhHHHHHHHHcC
Q 016545 282 LGRGGSDLTATTIGKALG 299 (387)
Q Consensus 282 LgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 87 -----~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 87 -----RDVTIEAVSALLD 99 (169)
T ss_dssp -----TCCHHHHHHTTCS
T ss_pred -----CCCcHHHHHHHcC
Confidence 5888888887764
No 48
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=62.79 E-value=15 Score=36.65 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+..+++.|++.|.....+ +++.| +.+.+++.+... .+...+.|++|..+.+.
T Consensus 209 N~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a-~~~~DlVittGG~s~g~---------- 261 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINL-----GIVGD-----------NPDDLLNALNEG-ISRADVIITSGGVSMGE---------- 261 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEE-----EEECS-----------SHHHHHHHHHHH-HHHCSEEEEESCCSSSC----------
T ss_pred chHHHHHHHHHCCCEEEEE-----eecCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCCC----------
Confidence 7788999999999987654 23332 224455555433 23467889998776652
Q ss_pred CcchhHHHHHHHHcCCceEEEee
Q 016545 285 GGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~T 307 (387)
-|++...++..++. ++.+|.
T Consensus 262 --~D~t~~al~~~lg~-~~~f~~ 281 (419)
T 2fts_A 262 --KDYLKQVLDIDLHA-QIHFGR 281 (419)
T ss_dssp --CHHHHHHHHTTTCC-EEEESE
T ss_pred --cccHHHHHHHHcCC-ceEEeE
Confidence 69999999888887 566664
No 49
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=61.40 E-value=17 Score=31.78 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCC--CcEEEEcCCccccCCCCceee
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD--LAIPIVTGFLGKAWRTCAITT 281 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~--~~IpVv~Gfig~~~~~G~~tt 281 (387)
-|+..+++.|++.|.....+ +++-| +.+.+++.+... .++ ..+.|++|..+.+.
T Consensus 40 sn~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a-~~~~~~DlVittGG~s~g~------- 95 (178)
T 2pjk_A 40 ESGDIIKQLLIENGHKIIGY-----SLVPD-----------DKIKILKAFTDA-LSIDEVDVIISTGGTGYSP------- 95 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HTCTTCCEEEEESCCSSST-------
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCCC-------
Confidence 37777888999999876553 23322 235566666443 343 57999998777652
Q ss_pred eCCCcchhHHHHHHHHcC
Q 016545 282 LGRGGSDLTATTIGKALG 299 (387)
Q Consensus 282 LgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 96 -----~D~t~eal~~~~~ 108 (178)
T 2pjk_A 96 -----TDITVETIRKLFD 108 (178)
T ss_dssp -----TCCHHHHHGGGCS
T ss_pred -----CcchHHHHHHHhc
Confidence 6888888888765
No 50
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=57.81 E-value=18 Score=32.11 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeC
Q 016545 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 204 lSa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
-|+..+++.|++.|...... +++-| +.+.+++.+...+.+...+.|++|..+.+.
T Consensus 49 sn~~~L~~~L~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a~~~~~DlVIttGGts~g~--------- 103 (185)
T 3rfq_A 49 HSGPLVTELLTEAGFVVDGV-----VAVEA-----------DEVDIRNALNTAVIGGVDLVVSVGGTGVTP--------- 103 (185)
T ss_dssp SHHHHHHHHHHHTTEEEEEE-----EEECS-----------CHHHHHHHHHHHHHTTCSEEEEESCCSSST---------
T ss_pred cHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC---------
Confidence 38888999999999876654 13322 234566665443224567999999777652
Q ss_pred CCcchhHHHHHHHHcC
Q 016545 284 RGGSDLTATTIGKALG 299 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++..++
T Consensus 104 ---~D~t~eal~~l~~ 116 (185)
T 3rfq_A 104 ---RDVTPESTREILD 116 (185)
T ss_dssp ---TCCHHHHHHTTCS
T ss_pred ---cccHHHHHHHHhc
Confidence 6888888887765
No 51
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=57.51 E-value=14 Score=31.99 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+..+++.|++.|.....+ +++- .+ +.+++.+.+.+.....+.|++|..+.+.
T Consensus 28 n~~~l~~~l~~~G~~v~~~-----~iv~-----------Dd-~~i~~al~~a~~~~~DlVittGG~s~g~---------- 80 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQP-----EVVA-----------DG-SPVGEALRKAIDDDVDVILTSGGTGIAP---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCEECCC-----EEEC-----------SS-HHHHHHHHHHHHTTCSEEEEESCCSSST----------
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeC-----------CH-HHHHHHHHHHHhCCCCEEEECCCCCCCC----------
Confidence 7778889999999865432 2232 22 3455555433222567999999777652
Q ss_pred CcchhHHHHHHHHcC
Q 016545 285 GGSDLTATTIGKALG 299 (387)
Q Consensus 285 GGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 81 --~D~t~eal~~~~~ 93 (164)
T 3pzy_A 81 --TDSTPDQTVAVVD 93 (164)
T ss_dssp --TCCHHHHHHTTCS
T ss_pred --CccHHHHHHHHhc
Confidence 6888888888765
No 52
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=57.12 E-value=14 Score=31.86 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHHHHH----HHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCcee
Q 016545 205 STRIFAAY----LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT 280 (387)
Q Consensus 205 Sa~Ll~~~----L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~t 280 (387)
|+..+++. |++.|+..... .++-| +.+.+++.+...+.....+.|++|..|.+.
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a~~~~~DlVittGG~g~~~------ 83 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISE-----VVVPE-----------GYDTVVEAIATALKQGARFIITAGGTGIRA------ 83 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEE-----EEECS-----------SHHHHHHHHHHHHHTTCSEEEEESCCSSST------
T ss_pred HHHHHHHhHHhHHHHCCCEEeEE-----EEeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC------
Confidence 67778888 88888765543 23322 235566666543222367899999787763
Q ss_pred eeCCCcchhHHHHHHHHcC
Q 016545 281 TLGRGGSDLTATTIGKALG 299 (387)
Q Consensus 281 tLgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 84 ------~D~t~ea~~~~~~ 96 (167)
T 2g2c_A 84 ------KNQTPEATASFIH 96 (167)
T ss_dssp ------TCCHHHHHHTTCS
T ss_pred ------CcChHHHHHHHhC
Confidence 5888888887654
No 53
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=54.32 E-value=27 Score=30.03 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhccc-CCCcEEEEcCCccccCCCCceeeeC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTLG 283 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~-~~~~IpVv~Gfig~~~~~G~~ttLg 283 (387)
|+.+++..|++.|++.... .++-| +.+.+.+.+...+. ....+.|++|..|.+.
T Consensus 41 ng~~L~~~L~~~G~~v~~~-----~iV~D-----------d~~~i~~al~~~~a~~~~DlVittGG~g~~~--------- 95 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGY-----SLVPD-----------DKIKILKAFTDALSIDEVDVIISTGGTGYSP--------- 95 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHHHTCTTCCEEEEESCCSSST---------
T ss_pred hHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHHHhcCCCCEEEecCCcccCC---------
Confidence 7778889999999987654 13322 22445555543221 3357899999787763
Q ss_pred CCcchhHHHHHHHHcC
Q 016545 284 RGGSDLTATTIGKALG 299 (387)
Q Consensus 284 RGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++..++
T Consensus 96 ---~D~t~ea~~~~~~ 108 (178)
T 3iwt_A 96 ---TDITVETIRKLFD 108 (178)
T ss_dssp ---TCCHHHHHGGGCS
T ss_pred ---CCchHHHHHHhhh
Confidence 5777777766554
No 54
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=50.56 E-value=37 Score=29.52 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=42.7
Q ss_pred HHHHHHHHHH---HcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC--CCcEEEEcCCccccCCCCce
Q 016545 205 STRIFAAYLN---KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAI 279 (387)
Q Consensus 205 Sa~Ll~~~L~---~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~--~~~IpVv~Gfig~~~~~G~~ 279 (387)
|+..+++.|+ +.|+.. .. +++-| +.+.|++.+... .+ ...+.|++|..|.+.
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~-----~iv~D-----------d~~~I~~~l~~~-~~~~~~DlVittGG~g~g~----- 82 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EY-----RVIPD-----------ERDLIEKTLIEL-ADEKGCSLILTTGGTGPAP----- 82 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EE-----EEECS-----------CHHHHHHHHHHH-HHTSCCSEEEEESCCSSST-----
T ss_pred hHHHHHHHHHHHHhCCCEE-EE-----EEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCCC-----
Confidence 6677888777 889875 32 23322 234556655443 33 567999999787662
Q ss_pred eeeCCCcchhHHHHHHHHcC
Q 016545 280 TTLGRGGSDLTATTIGKALG 299 (387)
Q Consensus 280 ttLgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 83 -------~D~t~ea~~~~~~ 95 (178)
T 2pbq_A 83 -------RDVTPEATEAVCE 95 (178)
T ss_dssp -------TCCHHHHHHHHCS
T ss_pred -------CCchHHHHHHHhC
Confidence 6899999988865
No 55
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=49.80 E-value=46 Score=33.09 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+..+.+.|++.|.....+ +++.| +.+.+++.+... .+...+.|++|..+.+.
T Consensus 205 n~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~al~~a-~~~~DlvittGG~s~g~---------- 257 (411)
T 1g8l_A 205 NRLAVHLMLEQLGCEVINL-----GIIRD-----------DPHALRAAFIEA-DSQADVVISSGGVSVGE---------- 257 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HHHCSEEEECSSSCSSS----------
T ss_pred chHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-hhcCCEEEECCCCCCCC----------
Confidence 7788999999999876654 23332 224455555433 23457889998776652
Q ss_pred CcchhHHHHHHHHcCCceEEEee
Q 016545 285 GGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~T 307 (387)
-|+|-..++.+ | ++.+|.
T Consensus 258 --~D~t~~al~~~-G--~i~f~~ 275 (411)
T 1g8l_A 258 --ADYTKTILEEL-G--EIAFWK 275 (411)
T ss_dssp --CSHHHHHHHHH-S--EEEEEE
T ss_pred --cccHHHHHHhc-C--cEEEEE
Confidence 69999999865 6 688874
No 56
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=48.39 E-value=44 Score=28.56 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHc-----CCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhccc-CCCcEEEEcCCccccCCCCc
Q 016545 205 STRIFAAYLNKI-----GVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCA 278 (387)
Q Consensus 205 Sa~Ll~~~L~~~-----Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~-~~~~IpVv~Gfig~~~~~G~ 278 (387)
|+..++..|++. |+....+ +++.| +.+.+++.+...+. ....+.|++|..+.+.
T Consensus 26 n~~~l~~~l~~~~~~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~---- 85 (167)
T 1uuy_A 26 SGPRAVSVVDSSSEKLGGAKVVAT-----AVVPD-----------EVERIKDILQKWSDVDEMDLILTLGGTGFTP---- 85 (167)
T ss_dssp HHHHHHHHHHHTTTTTTSEEEEEE-----EEECS-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST----
T ss_pred cHHHHHHHHHhccccCCCcEEeEE-----EEcCC-----------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC----
Confidence 445566667766 7655443 23322 23456666644321 3567999999777652
Q ss_pred eeeeCCCcchhHHHHHHHHcC
Q 016545 279 ITTLGRGGSDLTATTIGKALG 299 (387)
Q Consensus 279 ~ttLgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 86 --------~D~t~~a~~~~~~ 98 (167)
T 1uuy_A 86 --------RDVTPEATKKVIE 98 (167)
T ss_dssp --------TCCHHHHHHHHCS
T ss_pred --------CCchHHHHHHHhc
Confidence 6999999998875
No 57
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=48.11 E-value=45 Score=29.40 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHH---cCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC-CCcEEEEcCCccccCCCCce
Q 016545 204 MSTRIFAAYLNK---IGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAI 279 (387)
Q Consensus 204 lSa~Ll~~~L~~---~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~IpVv~Gfig~~~~~G~~ 279 (387)
-|+..+++.|++ .|...... +++-| +.+.+++.+...+.. ...+.|++|..|.+.
T Consensus 34 ~n~~~L~~~L~~~~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a~~~~~~DlVIttGGtg~g~----- 92 (189)
T 1jlj_A 34 RSGINLKDLVQDPSLLGGTISAY-----KIVPD-----------EIEEIKETLIDWCDEKELNLILTTGGTGFAP----- 92 (189)
T ss_dssp HHHHHHHHHHHCTTTTCCEEEEE-----EEECS-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST-----
T ss_pred hHHHHHHHHHhchhcCCcEEEEE-----EEeCC-----------CHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC-----
Confidence 377788888987 78766543 13322 234566656443221 467899999777652
Q ss_pred eeeCCCcchhHHHHHHHHcC
Q 016545 280 TTLGRGGSDLTATTIGKALG 299 (387)
Q Consensus 280 ttLgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++.+++
T Consensus 93 -------~D~t~eal~~~~~ 105 (189)
T 1jlj_A 93 -------RDVTPEATKEVIE 105 (189)
T ss_dssp -------TCCHHHHHHHHCS
T ss_pred -------cccHHHHHHHHhc
Confidence 6888888887763
No 58
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=47.72 E-value=44 Score=29.70 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCC--eEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccC-CCcEEEEcCCccccCCCCceee
Q 016545 205 STRIFAAYLNKIGVK--ARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITT 281 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~--A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~IpVv~Gfig~~~~~G~~tt 281 (387)
|+..+++.|++.|.. ... ..++-| +.+.+++.+...+.. ...+.|++|..|.+.
T Consensus 24 n~~~L~~~L~~~G~~~~v~~-----~~iV~D-----------d~~~I~~al~~a~~~~~~DlVitTGGtg~g~------- 80 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFELE-----TRLIPD-----------EQAIIEQTLCELVDEMSCHLVLTTGGTGPAR------- 80 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEEE-----EEEEES-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST-------
T ss_pred HHHHHHHHHHHcCCCCceEE-----EEEeCC-----------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-------
Confidence 777888999999987 322 123322 234566666543221 467899999787763
Q ss_pred eCCCcchhHHHHHHHHcC
Q 016545 282 LGRGGSDLTATTIGKALG 299 (387)
Q Consensus 282 LgRGGSD~tAa~LA~aL~ 299 (387)
-|+|.-.++..++
T Consensus 81 -----~D~T~ea~~~~~~ 93 (195)
T 1di6_A 81 -----RDVTPDATLAVAD 93 (195)
T ss_dssp -----TCCHHHHHHHTCS
T ss_pred -----CccHHHHHHHHhc
Confidence 5888888877754
No 59
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=47.09 E-value=40 Score=33.46 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCeEEecccceeeEeeCCCCCceecccchHHHHHHHhhcccCCCcEEEEcCCccccCCCCceeeeCC
Q 016545 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (387)
Q Consensus 205 Sa~Ll~~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~IpVv~Gfig~~~~~G~~ttLgR 284 (387)
|+..+++.|++.|.....+ +++.| +.+.+++.+... .++..+.|++|..+.+.
T Consensus 208 N~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a-~~~~DlVittGG~s~g~---------- 260 (402)
T 1uz5_A 208 NGRALCDAINELGGEGIFM-----GVARD-----------DKESLKALIEKA-VNVGDVVVISGGASGGT---------- 260 (402)
T ss_dssp HHHHHHHHHHHHTSEEEEE-----EEECS-----------SHHHHHHHHHHH-HHHCSEEEEECCC--------------
T ss_pred hHHHHHHHHHhCCCeEEEE-----EEeCC-----------CHHHHHHHHHHH-hhCCCEEEEcCCCCCCC----------
Confidence 7788999999999876653 23332 224455555433 23457889998676542
Q ss_pred CcchhHHHHHHHHcCCceEEEee
Q 016545 285 GGSDLTATTIGKALGLQEIQVWK 307 (387)
Q Consensus 285 GGSD~tAa~LA~aL~A~~v~i~T 307 (387)
-|+|-..++.+ | ++.+|.
T Consensus 261 --~D~t~~al~~~-G--~~~f~~ 278 (402)
T 1uz5_A 261 --KDLTASVIEEL-G--EVKVHG 278 (402)
T ss_dssp ---CHHHHHHHHH-S--EEEEEC
T ss_pred --cccHHHHHHhh-C--CEEEee
Confidence 69999999876 6 788883
Done!