BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016547
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 163/343 (47%), Gaps = 53/343 (15%)
Query: 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
I H GEVNR R +PQN I+AT T S DVL++D P++ G N PDL L GHQ
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178
Query: 88 NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
+ L+ P ++LS D ++ LW I PK
Sbjct: 179 EG-YGLSWNPNLSGHLLSASDDHTICLWD------------------------ISAVPK- 212
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
+G V + I+ GH VEDV++ F SV DD L++WD R TS
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
+ VQWSP ++ SS D LN+WD K+G+ EQ P + P L F H GH K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 325 VDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
DF WN ++PW +Q+W+M++ IY +D
Sbjct: 378 SDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 39/174 (22%)
Query: 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
H H EVN + P + I+AT + V +WD+ N L + S D I
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEI--- 320
Query: 85 HQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 143
F + P +L S G D+ + +W + S I +
Sbjct: 321 ------FQVQWSPHNETILASSGTDRRLNVWDL---------------------SKIGEE 353
Query: 144 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
P D A DGP I+ GH + D ++ P+ CSV +D+ + +W
Sbjct: 354 QSPED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
R+ +K H H E+ +++ P N I+A+ + +WD+ + A +
Sbjct: 304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGP 363
Query: 78 PDLILTGHQDNAEFA-LAMCPTEPYVL-SGGKDKSVVLWSIQDHI 120
P+L+ A+ + + P EP+V+ S +D + +W + ++I
Sbjct: 364 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 158/340 (46%), Gaps = 49/340 (14%)
Query: 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
I H GEVNR R +PQN I+AT T S DVL++D P + G N PDL L GHQ
Sbjct: 123 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQK 180
Query: 88 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 147
++LS D +V LW I +AG PK
Sbjct: 181 EGYGLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK-- 214
Query: 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPV 206
+G V + I+ GH VEDV + F SV DD L++WD R TS
Sbjct: 215 -------EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKP 267
Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266
+ AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326
V WSP ++ SS D LN+WD K+G++ + + P L F H GH K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 327 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQ 366
F WN ++PW +QIW+M++ IY +
Sbjct: 382 FSWNPNEPW-------VICSVSEDNIMQIWQMAENIYNDE 414
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
R+ +K H H E+ ++ P N I+A+ + +WD+ + A +
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Query: 78 PDLILTGHQDNAEFA-LAMCPTEPYVL-SGGKDKSVVLWSIQDHI 120
P+L+ A+ + + P EP+V+ S +D + +W + ++I
Sbjct: 366 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 39/174 (22%)
Query: 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
H H EVN + P + I+AT + V +WD+ N L S D I
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHTFESHKDEI--- 322
Query: 85 HQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 143
F + P +L S G D+ + +W + S I +
Sbjct: 323 ------FQVHWSPHNETILASSGTDRRLNVWDL---------------------SKIGEE 355
Query: 144 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
D A DGP I+ GH + D ++ P+ CSV +D+ + +W
Sbjct: 356 QSAED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 51/342 (14%)
Query: 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
I H GEVNR R +PQN ++AT T S DVL++D P++ G +PDL L GHQ
Sbjct: 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQK 182
Query: 88 NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
+ L+ P Y+LS D ++ LW I AT K
Sbjct: 183 EG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------------- 216
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
+ + + I+ GH VEDV + F SV DD L++WD R TS
Sbjct: 217 --------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H
Sbjct: 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 323
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
+ VQWSP ++ SS D L++WD K+G++ + + P L F H GH K+
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKIS 382
Query: 326 DFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
DF WN ++PW +Q+W+M++ +Y ++
Sbjct: 383 DFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 417
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
H H EVN + P + I+AT + V +WD+ N L + S D I
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEI--- 324
Query: 85 HQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 143
F + P +L S G D+ + +W + S I +
Sbjct: 325 ------FQVQWSPHNETILASSGTDRRLHVWDL---------------------SKIGEE 357
Query: 144 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
D A DGP I+ GH + D ++ P+ CSV +D+ + +W
Sbjct: 358 QSTED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
R+ +K H H E+ +++ P N I+A+ + +WD+ + A +
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367
Query: 78 PDLILTGHQDNAEFA-LAMCPTEPYVL-SGGKDKSVVLWSIQDHI 120
P+L+ A+ + + P EP+++ S +D + +W + +++
Sbjct: 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 51/342 (14%)
Query: 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
I H GEVNR R +PQN ++AT T S DVL++D P++ G +PDL L GHQ
Sbjct: 127 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQK 184
Query: 88 NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
+ L+ P Y+LS D ++ LW I AT K
Sbjct: 185 EG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------------- 218
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
+ + + I+ GH VEDV + F SV DD L++WD R TS
Sbjct: 219 --------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 270
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H
Sbjct: 271 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 325
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
+ VQWSP ++ SS D L++WD K+G++ + + P L F H GH K+
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKIS 384
Query: 326 DFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
DF WN ++PW +Q+W+M++ +Y ++
Sbjct: 385 DFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 419
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
R+ +K H H E+ +++ P N I+A+ + +WD+ + A +
Sbjct: 310 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 369
Query: 78 PDLILTGHQDNAEFA-LAMCPTEPYVL-SGGKDKSVVLWSIQDHI 120
P+L+ A+ + + P EP+++ S +D + +W + +++
Sbjct: 370 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 414
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
H H EVN + P + I+AT + V +WD+ N L + S D I
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEI--- 326
Query: 85 HQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 143
F + P +L S G D+ + +W + S I +
Sbjct: 327 ------FQVQWSPHNETILASSGTDRRLHVWDL---------------------SKIGEE 359
Query: 144 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
D A DGP I+ GH + D ++ P+ CSV +D+ + +W
Sbjct: 360 QSTED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 51/342 (14%)
Query: 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
I H GEVNR R +PQN ++AT T S DVL++D P++ G +PDL L GHQ
Sbjct: 129 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQK 186
Query: 88 NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
+ L+ P Y+LS D ++ LW I AT K
Sbjct: 187 EG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------------- 220
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
+ + + I+ GH VEDV + F SV DD L++WD R TS
Sbjct: 221 --------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 272
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H
Sbjct: 273 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 327
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
+ VQWSP ++ SS D L++WD K+G++ + + P L F H GH K+
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKIS 386
Query: 326 DFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
DF WN ++PW +Q+W+M++ +Y ++
Sbjct: 387 DFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 421
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
R+ +K H H E+ +++ P N I+A+ + +WD+ + A +
Sbjct: 312 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 371
Query: 78 PDLILTGHQDNAEFA-LAMCPTEPYVL-SGGKDKSVVLWSIQDHI 120
P+L+ A+ + + P EP+++ S +D + +W + +++
Sbjct: 372 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 416
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
H H EVN + P + I+AT + V +WD+ N L + S D I
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEI--- 328
Query: 85 HQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 143
F + P +L S G D+ + +W + S I +
Sbjct: 329 ------FQVQWSPHNETILASSGTDRRLHVWDL---------------------SKIGEE 361
Query: 144 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
D A DGP I+ GH + D ++ P+ CSV +D+ + +W
Sbjct: 362 QSTED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 155/340 (45%), Gaps = 49/340 (14%)
Query: 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
I H GEVNR R PQN I+AT T S DVL++D P + G N PDL L GHQ
Sbjct: 123 INHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQK 180
Query: 88 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 147
++LS D +V LW I +AG PK
Sbjct: 181 EGYGLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK-- 214
Query: 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPV 206
+G V + I+ GH VEDV + F SV DD L +WD R TS
Sbjct: 215 -------EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKP 267
Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266
+ AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326
V WSP ++ SS D LN+WD K+G++ + + P L F H GH K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 327 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQ 366
F WN ++PW QIW+ ++ IY +
Sbjct: 382 FSWNPNEPWVICSVSEDNIX-------QIWQXAENIYNDE 414
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
R+ +K H H E+ ++ P N I+A+ + +WD+ + A +
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Query: 78 PDLILTGHQDNAEFA-LAMCPTEPYVL-SGGKDKSVVLWSIQDHI 120
P+L+ A+ + + P EP+V+ S +D +W ++I
Sbjct: 366 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 39/174 (22%)
Query: 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
H H EVN + P + I+AT + V +WD+ N L S D I
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHTFESHKDEI--- 322
Query: 85 HQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 143
F + P +L S G D+ + +W + S I +
Sbjct: 323 ------FQVHWSPHNETILASSGTDRRLNVWDL---------------------SKIGEE 355
Query: 144 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
D A DGP I+ GH + D ++ P+ CSV +D+ +W
Sbjct: 356 QSAED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 84 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 139
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S+ SS+ D
Sbjct: 140 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 192
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 193 GLCRIWD 199
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 98 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 144
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 202
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 259
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 260 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 313
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 314 NIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 86 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 141
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 142 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 194
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 195 GLCRIWD 201
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 100 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 146
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 204
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 261
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 262 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 315
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 316 NIIASAALENDKTIKLW 332
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 82 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 128
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 186
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 243
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 297
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 276 SSVFGSSAED 285
+ + ++ E+
Sbjct: 295 NIIASAALEN 304
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 79 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 134
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 135 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 187
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 188 GLCRIWD 194
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 93 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 139
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 197
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 254
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 255 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 308
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 309 NIIASAALENDKTIKLW 325
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 82 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 128
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 186
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 243
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 297
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 276 SSVFGSSAED 285
+ + ++ E+
Sbjct: 295 NIIASAALEN 304
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 67 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 122
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 123 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 175
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 176 GLCRIWD 182
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 81 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 127
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 185
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 242
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 296
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 297 NIIASAALENDKTIKLW 313
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 63 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 118
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 119 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 171
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 172 GLCRIWD 178
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 77 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 123
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 181
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 238
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 292
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 293 NIIASAALENDKTIKLW 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 62 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 171 GLCRIWD 177
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 76 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 122
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 180
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 237
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 291
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 292 NIIASAALENDKTIKLW 308
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 82 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 128
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 186
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 243
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 297
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 58 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 113
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 114 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 166
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 167 GLCRIWD 173
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 32/258 (12%)
Query: 42 QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101
++ ++ + +D + IWDV ++ + L GH N F P
Sbjct: 71 SDSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNL 117
Query: 102 VLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157
++SG D+SV +W ++ + +DP +A GS+I S DG + D
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTA 175
Query: 158 S-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 216
S + + + V V F P+ + D++ L LWD G +K H +
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNE 232
Query: 217 LHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 274
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P
Sbjct: 233 KYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPT 286
Query: 275 KSSVFGSSAE-DGLLNIW 291
++ + ++ E D + +W
Sbjct: 287 ENIIASAALENDKTIKLW 304
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104
K +AT + + IWD+E NR V+ IL GH+ + ++L P+ ++S
Sbjct: 136 KFLATGAEDRLIRIWDIE---NRKIVM---------ILQGHEQDI-YSLDYFPSGDKLVS 182
Query: 105 GGKDKSVVLW-----------SIQDHITSSATDPATAK--SAGSSGSIIKQ-SPKPGDGN 150
G D++V +W SI+D +T+ A P K +AGS ++ + G
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 151 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW---------DARV 201
++ G GH+D+V V F Q S D + LW D++
Sbjct: 243 ERLDSENESG-----TGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261
S +V D +D IL+GS D V +D+++ G+P+ +G
Sbjct: 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQG 350
Query: 262 HSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWDYEKVG 297
H +V+ V + S +VF + + D IW Y+K+
Sbjct: 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 35/172 (20%)
Query: 83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 142
TGH+D+ +++ V+SG D+SV LW++Q+ A KS
Sbjct: 253 TGHKDSV-YSVVFTRDGQSVVSGSLDRSVKLWNLQN---------ANNKS---------D 293
Query: 143 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202
S P G + Y GH+D V V + + S D ++ WD + G
Sbjct: 294 SKTPNSGTCEVT----------YIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSG 342
Query: 203 TSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDRRNLTSN 250
+P++ ++ ++ + N + N+ TGS D R++ + + N
Sbjct: 343 -NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 62 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 171 GLCRIWD 177
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 76 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 122
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 180
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 237
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 291
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 292 NIIASAALENDKTIKLW 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 61 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 116
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 117 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 169
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 170 GLCRIWD 176
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 32/258 (12%)
Query: 42 QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101
++ ++ + +D + IWDV ++ + L GH N F P
Sbjct: 74 SDSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNL 120
Query: 102 VLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157
++SG D+SV +W ++ + +DP +A GS+I S DG + D
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTA 178
Query: 158 S-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 216
S + + + V V F P+ + D++ L LWD G +K H +
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNE 235
Query: 217 LHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 274
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPT 289
Query: 275 KSSVFGSSAE-DGLLNIW 291
++ + ++ E D + +W
Sbjct: 290 ENIIASAALENDKTIKLW 307
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 103 LSGGKDKSVVLWSIQDHITSSA----TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 32/257 (12%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 103 LSGGKDKSVVLWSIQDHITSSA----TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 159 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
+ + + V V F P+ + D+ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 218 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 276 SSVFGSSAE-DGLLNIW 291
+ + ++ E D + +W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 49/259 (18%)
Query: 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104
+ +A+ +D V +W NR+ L T LTGH + +A P + S
Sbjct: 357 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSVR-GVAFSPDGQTIAS 402
Query: 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN-DKAADGPSVGPRG 163
DK+V LW+ + + T G S S+ + P D A+D +V
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDDQTIASASDDKTVK--- 451
Query: 164 IYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH 213
++N GH +V V F P Q S DD + LW+ R G +++ H
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGH 507
Query: 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 273
+ + V ++P D I + S D +V++++R G + GHS++V V +SP
Sbjct: 508 SSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP 559
Query: 274 DKSSVFGSSAEDGLLNIWD 292
D ++ S++ D + +W+
Sbjct: 560 DGQTI-ASASSDKTVKLWN 577
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 49/259 (18%)
Query: 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104
+ +A+ +D V +W NR+ L T LTGH + + +A P + S
Sbjct: 152 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSV-WGVAFSPDGQTIAS 197
Query: 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-GDGNDKAADGPSVGPRG 163
DK+V LW+ + + T G S S+ + P G A+D +V
Sbjct: 198 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVK--- 246
Query: 164 IYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH 213
++N GH +V V F P Q S DD + LW+ R G +++ H
Sbjct: 247 LWNRNGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGH 302
Query: 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 273
+ + V ++P D I + S D +V++++R G + GHS++V V +SP
Sbjct: 303 SSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-------GQHLQTLTGHSSSVWGVAFSP 354
Query: 274 DKSSVFGSSAEDGLLNIWD 292
D ++ S+++D + +W+
Sbjct: 355 DGQTI-ASASDDKTVKLWN 372
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 49/259 (18%)
Query: 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104
+ +A+ +D V +W NR+ L T LTGH + + +A P + S
Sbjct: 29 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSV-WGVAFSPDGQTIAS 74
Query: 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-GDGNDKAADGPSVGPRG 163
DK+V LW+ + + T G S S+ + P G A+D +V
Sbjct: 75 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTV---K 123
Query: 164 IYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH 213
++N GH +V V F P Q S DD + LW+ R G +++ H
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNG--QLLQTLTGH 179
Query: 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 273
+ + V ++P D I + S D +V++++R G + GHS++V V +SP
Sbjct: 180 SSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSP 231
Query: 274 DKSSVFGSSAEDGLLNIWD 292
D ++ S+++D + +W+
Sbjct: 232 DGQTI-ASASDDKTVKLWN 249
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 218
V R H +V V F P Q S DD + LW+ R G +++ H + +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVW 61
Query: 219 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 278
V ++P D I + S D +V++++R G + GHS++V V +SPD ++
Sbjct: 62 GVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 279 FGSSAEDGLLNIWD 292
S+++D + +W+
Sbjct: 114 -ASASDDKTVKLWN 126
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCV 220
+ GH+ + P + D +LWD G I + H AD+ +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 280
N L+ N+ ++GS D +VR++D R +TS V + GH + V++ PD FG
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FG 265
Query: 281 SSAEDGLLNIWDYEKVGKKVE 301
+ ++DG ++D + G +++
Sbjct: 266 TGSDDGTCRLFDM-RTGHQLQ 285
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 172 VEDVTFCPSSAQEFCSVGDDSCLIL----WDARVGTSPVIKVEKAHDADLHCVDWNPLDD 227
V + F P+ C D +C I R G PV +V H + P +
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSS 282
++TGS D + ++D G I+ F GH+A VL + + +++F S
Sbjct: 171 TRLITGSGDQTCVLWDVT------TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 283 AEDGLLNIWDYEKVGKKVE 301
+ D + +WD + V
Sbjct: 225 SCDTTVRLWDLRITSRAVR 243
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
+GHS V + W+P+K+ + S+++DG L +W+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWN 94
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 81 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---PATAKSAGSSG 137
ILTGH + L + E +++G D +V +W + + A ++G
Sbjct: 168 ILTGHTGSV---LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 138 SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
++ S A + R + GH V V F + S D + +W
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW 281
Query: 198 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257
+ T ++ H + C+ + D L+++GS+DN++R++D G+ +
Sbjct: 282 NT--STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE------CGACLR 330
Query: 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
EGH V C+++ + S A DG + +WD
Sbjct: 331 VLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD 362
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 217 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 276
++C+ + DD I++G DN+++++D+ L + GH+ +VLC+Q+ ++
Sbjct: 136 VYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRI------LTGHTGSVLCLQYD-ERV 185
Query: 277 SVFGSSAEDGLLNIWD 292
+ GSS D + +WD
Sbjct: 186 IITGSS--DSTVRVWD 199
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242
Q+ S D+ + +WD T ++ H + C+ + D+ +I+TGS+D++VR++
Sbjct: 144 QKIVSGLRDNTIKIWDK--NTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 198
Query: 243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
D G +N H AVL ++++ + + + ++D + +WD
Sbjct: 199 D------VNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWD 239
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 303
+ P + S +EDG L IW+ KV K + G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 153
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 154 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYY 193
Query: 273 PDKSSVFGSSAEDGL-LNIWDYE 294
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 303
+ P + S +EDG L IW+ KV K + G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 153
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 154 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYY 193
Query: 273 PDKSSVFGSSAEDGL-LNIWDYE 294
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 224
+ GH V V F P + Q S G D+ L +W+ + G AH + CV ++P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP 162
Query: 225 -LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 283
LD +I++G DN V+++D G + +GH+ V V SPD S+ SS
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSD 215
Query: 284 EDGLLNIWDYEK 295
+DG+ +WD K
Sbjct: 216 KDGVARLWDLTK 227
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
+ N ++ S D+S+R+++ +N G KF GH+ VL V +SPD + S D
Sbjct: 78 NGNFAVSASWDHSLRLWNLQN------GQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRD 130
Query: 286 GLLNIWDYE 294
L +W+ +
Sbjct: 131 NALRVWNVK 139
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 61/229 (26%)
Query: 81 ILTGHQD-----NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS 135
IL GH D A F+ P ++SG +DK+V++W +
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY------------------ 57
Query: 136 SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---SVGDDS 192
++ +G P GH V D+ +QE C S D
Sbjct: 58 ---------------EEEQNGYFGIPHKALTGHNHFVSDLAL----SQENCFAISSSWDK 98
Query: 193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252
L LWD R GT+ K H ++++ V ++P D+ IL+ A+ ++++ N+
Sbjct: 99 TLRLWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLW---NILGECK 152
Query: 253 GSPINKFEGHSAAVLCVQWSPDKSSV---------FGSSAEDGLLNIWD 292
S K E HS V CV++SP S F S DG L +W+
Sbjct: 153 FSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 114/312 (36%), Gaps = 49/312 (15%)
Query: 8 MLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR 67
M+ + EE F HK + L Q + + + +WD+
Sbjct: 52 MIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT---- 107
Query: 68 HAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP 127
G T R GHQ +++A P +LS G ++ + LW+I S+
Sbjct: 108 ----GTTYKR----FVGHQSEV-YSVAFSPDNRQILSAGAEREIKLWNILGECKFSS--- 155
Query: 128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGP---SVG-------------PRGIYNGHEDT 171
A ++ S ++ SP N P SVG R + HE
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESN 215
Query: 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNL 229
V ++ P + + + G D L++WD T P ++ DA ++ + +NP
Sbjct: 216 VNHLSISP-NGKYIATGGKDKKLLIWDILNLTYP----QREFDAGSTINQIAFNP-KLQW 269
Query: 230 ILTGSADNSVRMFDRRNLTSNGV----GSPINKFEGHSAA---VLCVQWSPDKSSVFGSS 282
+ G+ D V++F+ + V PI K EG + W+ +F +
Sbjct: 270 VAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF-AG 327
Query: 283 AEDGLLNIWDYE 294
DG++ + +E
Sbjct: 328 FTDGVIRTFSFE 339
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 25/140 (17%)
Query: 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--------- 209
V RGI GH D V + S + +DS +++ +R T + K+
Sbjct: 11 VVKRGILEGHSDWVTSIVAGFSQKEN-----EDSPVLISGSRDKTVMIWKLYEEEQNGYF 65
Query: 210 ---EKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264
KA H V L ++ ++ S D ++R++D R G+ +F GH +
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR------TGTTYKRFVGHQS 119
Query: 265 AVLCVQWSPDKSSVFGSSAE 284
V V +SPD + + AE
Sbjct: 120 EVYSVAFSPDNRQILSAGAE 139
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWD 292
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 14/203 (6%)
Query: 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 153
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 154 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
H+ + CV +NP D + +G D +V+++ T N G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-----FTLTTGQERGVNYVDYY 193
Query: 273 PDKSSVFGSSAEDGL-LNIWDYE 294
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWD 292
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 153
PTEP+VL+ V +W+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 154 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYVDYY 193
Query: 273 PDKSSVFGSSAEDGL-LNIWDYE 294
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHD-ADLHC 219
R I N T+ VTF + E +V L +WD R G P + D LHC
Sbjct: 184 RTIDNADSSTLHAVTFLRTP--EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHC 241
Query: 220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
VD +P +++ TG D + ++D R T P++ + H A + V + P
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTM-----PVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 280 GSSAEDGLLNIWDYE----KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334
+ +EDG L WD + QG R++ + + A V+ W ++DP
Sbjct: 297 FTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVIS-SWLSTDP 354
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
E +VG+D + L+ A V ++ A + LH V + L ILT ++ ++++D
Sbjct: 162 EIVTVGEDGRINLFRAD-HKEAVRTIDNADSSTLHAVTF--LRTPEILTVNSIGQLKIWD 218
Query: 244 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 303
R S I G + CV P++ V + +DG+L+IWD V QG
Sbjct: 219 FRQ--QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWD-------VRQG 269
Query: 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334
P L H ++ + H++ S+P
Sbjct: 270 ----TMPVSLL---KAHEAEMWEVHFHPSNP 293
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 160
Y+LSGG D +VL+ +++ SS T K+ S G D P V
Sbjct: 58 YMLSGGSDGVIVLYDLEN---SSRQSYYTCKAVCSIGR----------------DHPDV- 97
Query: 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHC 219
H +VE V + P F S D L +WD + T+ V E+ ++
Sbjct: 98 -------HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYS 146
Query: 220 VDWNPLDDN--LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
+P+ L+ G+ V++ D ++ GS + +GH +L V WSP
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDY 200
Query: 278 VFGSSAEDGLLNIWDYEK 295
+ +++ D + +WD +
Sbjct: 201 ILATASADSRVKLWDVRR 218
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 209 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN------LTSNGVGSPINKF-EG 261
VE+ H ++ +D P++ +L+G +D + ++D N T V S +
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
H +V VQW P + +F SS+ D L +WD
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250
DS L LW S D+ + +DW+ +N I+ G+ DN N +N
Sbjct: 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANN 101
Query: 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 310
+ S + +F HS++V V+++ + +V S +G + IWD K + +NY
Sbjct: 102 AINS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES------PSNYT 154
Query: 311 AGLFFQHAGHRDKVVDFHWNAS 332
Q D+V+ WN S
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQS 176
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/118 (16%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249
+D +++WD R +P+ + + H + +DW D++L+L+ DN+V +++ +
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--- 294
Query: 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 307
+++F +++P+ +F ++ D + + + + +++ T
Sbjct: 295 ---AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 41 PQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC- 96
P+N+ VAT T S P +LIWD+ R+A N+ + GHQ +L C
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDL-----RNA-----NTPLQTLNQGHQKGI-LSLDWCH 272
Query: 97 PTEPYVLSGGKDKSVVLWS 115
E +LS G+D +V+LW+
Sbjct: 273 QDEHLLLSSGRDNTVLLWN 291
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGHSAA--VLCV 269
H + + V +N DN++ +G + + ++D T + +P+ + S+ V+ +
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 300
W+ + VF S+ +IWD K K+V
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDL-KAKKEV 201
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 36/191 (18%)
Query: 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 227
H+D V V+ S Q S D C+ +WD + V+ +AH A + CV +P D
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 228 NLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286
++ L+ S DN + ++D R ++ +G + S A W P +S VF E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 287 LLNIWDYEKVGKKVEQG------------PRTTNYPAGL---------------FFQHAG 319
+++ D + + P + + A L F+
Sbjct: 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA 297
Query: 320 HRDKVVDFHWN 330
HRD V D W+
Sbjct: 298 HRDFVRDATWS 308
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 212 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 267
H A + + W P +DN+I +GS D +V +++ + G+ P+ + EGH+ V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V W P +V S+ D ++ +WD + GP
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GH V V + P++ S G D+ +++WD G + + H ++ VDW+
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-R 186
Query: 226 DDNLILTGSADNSVRMFDRRNLT 248
D LI T D VR+ + R T
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADL 217
+ GH V D+ + P + S +D +++W+ G PVI +E H +
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRV 134
Query: 218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDK 275
V W+P N++L+ DN + ++D G G+ + + H + V WS D
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWD------VGTGAAVLTLGPDVHPDTIYSVDWSRD- 187
Query: 276 SSVFGSSAEDGLLNIWDYEK 295
++ +S D + + + K
Sbjct: 188 GALICTSCRDKRVRVIEPRK 207
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 7 AMLLFQFNEEARSPFVKKHKTII--HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 64
A L+ + R V K+ ++ H V I P N ++A+ ++ V++W++
Sbjct: 58 AFLVLPLGKTGR---VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI--- 111
Query: 65 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 116
P+ VL P + L GH + +LS G D +++W +
Sbjct: 112 PDGGLVLPLRE--PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHC 219
G G + V F PS S DD+ + +++ P K + H +H
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVHS 195
Query: 220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSV 278
V +NP D +L + D ++ +++ + T GV + K HS +V + WSPD + +
Sbjct: 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 279 FGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAGLF 314
+SA D + IW+ KV K + G R + G+
Sbjct: 255 ASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 45/180 (25%)
Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--- 211
+GP + + H V V + P + F S G D ++L++ GT + +
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 212 --AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL---------------------- 247
AH + + W+P D I + SAD ++++++ L
Sbjct: 235 NVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293
Query: 248 -------TSNG--------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
++NG +GS GH+ A+ + S D ++F + AE G +N WD
Sbjct: 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE-GHINSWD 352
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295
N + H+A V CV WSPD + S ++ ++ +W+ K
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVI-VWNMNK 567
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
H A + CV W+P D+ + TGS DNSV +++
Sbjct: 535 HTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 250
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 251 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
+S F + D L+ IW Y
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 250
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 138 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195
Query: 251 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 196 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 244
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 212 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 267
H A + + W P +DN+I +GS D +V +++ + G+ P+ + EGH+ V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V W P +V S+ D ++ +WD + GP
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADLHCV 220
GH V D+ +CP + S +D +++W+ G PVI +E H + V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSV 278
W+P N++L+ DN + ++D G G+ + + H + V WS D ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWD------VGTGAAVLTLGPDVHPDTIYSVDWSRD-GAL 190
Query: 279 FGSSAEDGLLNIWDYEK 295
+S D + + + K
Sbjct: 191 ICTSCRDKRVRVIEPRK 207
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GH V V + P++ S G D+ +++WD G + + H ++ VDW+
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-R 186
Query: 226 DDNLILTGSADNSVRMFDRRNLT 248
D LI T D VR+ + R T
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 7 AMLLFQFNEEARSPFVKKHKTII--HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 64
A L+ + R V K+ ++ H V I P N ++A+ ++ V++W++
Sbjct: 58 AFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI--- 111
Query: 65 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 116
P+ VL P + L GH + +LS G D +++W +
Sbjct: 112 PDGGLVLPLRE--PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 222
G GH V + + S + S G+D+ + +WDAR K H+A + V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 282
P NL+ TG M + + + G+ +N + S V + WSP + +
Sbjct: 268 CPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTH 322
Query: 283 A-EDGLLNIWDYEKVG 297
D L+IW Y G
Sbjct: 323 GFPDNNLSIWSYSSSG 338
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
+ ++L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 250
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 251 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
R + H D V F Q S G D L ++ A G ++ + KAH+ ++ C
Sbjct: 608 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 664
Query: 222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 279
++ DD+ I T SAD V+++D + G ++ ++ HS V C ++ +KS+ +
Sbjct: 665 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 716
Query: 280 GSSAEDGLLNIWDYEK 295
+ + D L +WD +
Sbjct: 717 ATGSNDFFLKLWDLNQ 732
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223
Y+ H + V F S + G +D L LWD + H ++ ++
Sbjct: 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 752
Query: 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--------EGHSAAVLCVQWSPDK 275
P DD L+ + SAD ++R++D R+ + +F E V C WS D
Sbjct: 753 P-DDELLASCSADGTLRLWDVRSANERK-SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 276 SSVFGSSAEDGLL 288
+ ++ LL
Sbjct: 811 DKIIVAAKNKVLL 823
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 148 DGNDKAADGPS--VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 205
DG K + P+ V G+ GH+ V + F + + S +DS + +W+ + G
Sbjct: 982 DGAIKIIELPNNRVFSSGV--GHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYV 1038
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLT----------- 248
++ AH + D+ L D+ +L+ S D +V++++ R+ T
Sbjct: 1039 FLQ---AHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093
Query: 249 -------------------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289
S + SP+++ +GH+ V C +S D + + ++G +
Sbjct: 1094 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIR 1152
Query: 290 IWD 292
IW+
Sbjct: 1153 IWN 1155
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 27/97 (27%)
Query: 233 GSADNSVRMFDRRN--LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 290
G D ++++ + N + S+GVG H AV +Q++ D ++ SS+ED ++ +
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVG--------HKKAVRHIQFTADGKTLI-SSSEDSVIQV 1029
Query: 291 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327
W+++ T +Y +F Q H++ V DF
Sbjct: 1030 WNWQ-----------TGDY---VFLQ--AHQETVKDF 1050
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 93 LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
+A P P +LS +DK++++W + T+
Sbjct: 21 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 54
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 210
P+ GH V DV SS +F G D L LWD GT+ V
Sbjct: 55 ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 102
Query: 211 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
H D+ V ++ D+ I++GS D ++++++ + GV + E HS V CV+
Sbjct: 103 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 155
Query: 271 WSPDKSS-VFGSSAEDGLLNIWD 292
+SP+ S+ + S D L+ +W+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWN 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
RG GH V + P S D +I+W + ++A H V
Sbjct: 8 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 222 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
+ D L+GS D ++R++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330
S + D + +W+ V K Q + + + + F +V W+
Sbjct: 122 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 171
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
R + H D V F Q S G D L ++ A G ++ + KAH+ ++ C
Sbjct: 615 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 671
Query: 222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 279
++ DD+ I T SAD V+++D + G ++ ++ HS V C ++ +KS+ +
Sbjct: 672 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 723
Query: 280 GSSAEDGLLNIWDYEK 295
+ + D L +WD +
Sbjct: 724 ATGSNDFFLKLWDLNQ 739
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223
Y+ H + V F S + G +D L LWD + H ++ ++
Sbjct: 702 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 759
Query: 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--------EGHSAAVLCVQWSPDK 275
P DD L+ + SAD ++R++D R+ + +F E V C WS D
Sbjct: 760 P-DDELLASCSADGTLRLWDVRSANERK-SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 276 SSVFGSSAEDGLL 288
+ ++ LL
Sbjct: 818 DKIIVAAKNKVLL 830
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 148 DGNDKAADGPS--VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 205
DG K + P+ V G+ GH+ V + F + + S +DS + +W+ + G
Sbjct: 989 DGAIKIIELPNNRVFSSGV--GHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYV 1045
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLT----------- 248
++ AH + D+ L D+ +L+ S D +V++++ R+ T
Sbjct: 1046 FLQ---AHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1100
Query: 249 -------------------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289
S + SP+++ +GH+ V C +S D + + ++G +
Sbjct: 1101 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIR 1159
Query: 290 IWD 292
IW+
Sbjct: 1160 IWN 1162
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 27/97 (27%)
Query: 233 GSADNSVRMFDRRN--LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 290
G D ++++ + N + S+GVG H AV +Q++ D ++ SS+ED ++ +
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVG--------HKKAVRHIQFTADGKTLI-SSSEDSVIQV 1036
Query: 291 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327
W+++ T +Y +F Q H++ V DF
Sbjct: 1037 WNWQ-----------TGDY---VFLQ--AHQETVKDF 1057
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 93 LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
+A P P +LS +DK++++W + T+
Sbjct: 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 77
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 210
P+ GH V DV SS +F G D L LWD GT+ V
Sbjct: 78 ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 125
Query: 211 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
H D+ V ++ D+ I++GS D ++++++ + GV + E HS V CV+
Sbjct: 126 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 178
Query: 271 WSPDKSS-VFGSSAEDGLLNIWD 292
+SP+ S+ + S D L+ +W+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWN 201
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
RG GH V + P S D +I+W + ++A H V
Sbjct: 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 222 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
+ D L+GS D ++R++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330
S + D + +W+ V K Q + + + + F +V W+
Sbjct: 145 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 250
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 251 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD----------ARVGTSP----VIKVEKA 212
GHE TV + F PS Q S DD + +W A G+ P + +
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDR---RNLTSNGVGSPINKFEGHSAAVLCV 269
H ++ + W L L T D+++R+F + + + HS V CV
Sbjct: 251 HSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 270 QWSPDKSSVFGSSAEDGLLNIWDYEK 295
W+P + + S ++DG + W Y++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 19/224 (8%)
Query: 80 LILTG----HQDNAEFALAMCPTEPYVLSGGKDKSVVLWS------IQDHITSSATDPAT 129
L+L G H D+ + LA P + S G D+ + +W I + S
Sbjct: 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 130 AKSAGS-SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188
K A S G+ + + + GHE+ V+ V + P S +
Sbjct: 65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATC 123
Query: 189 GDDSCLILWDA-RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247
D + +W+ + V +H D+ V W+P L+ + S D++V+++ R
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY--REE 180
Query: 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 291
+ V EGH + V + + P + S ++D + IW
Sbjct: 181 EDDWVCCAT--LEGHESTVWSLAFDPSGQRL-ASCSDDRTVRIW 221
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223
+ GH+D V +T S DD+ L +W A G ++ H + W+
Sbjct: 113 VLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGV----WS 164
Query: 224 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 282
+ DN+I++GS D ++++++ G I+ GH++ V C+ +K V GS
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET------GECIHTLYGHTSTVRCMHLH-EKRVVSGS- 216
Query: 283 AEDGLLNIWDYE 294
D L +WD E
Sbjct: 217 -RDATLRVWDIE 227
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 44/256 (17%)
Query: 46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105
I++ TD + +W+ E H + G T++ M E V+SG
Sbjct: 172 IISGSTDRT-LKVWNAETGECIHTLYGHTST---------------VRCMHLHEKRVVSG 215
Query: 106 GKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161
+D ++ +W I+ H+ A + G + D K D +
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGHV--AAVRCVQYDGRRVVSGAY--DFMVKVWDPETETC 271
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
GH + V + F S D+ + +WD G I H + ++
Sbjct: 272 LHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGME 326
Query: 222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSV 278
L DN++++G+AD++V+++D + G + +G H +AV C+Q+ +K+ V
Sbjct: 327 ---LKDNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTCLQF--NKNFV 375
Query: 279 FGSSAEDGLLNIWDYE 294
+S++DG + +WD +
Sbjct: 376 I-TSSDDGTVKLWDLK 390
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 26 KTIIHP--GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT 83
+T +H G NR+ L + V + + + +WDVE H LT
Sbjct: 269 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT------------LT 316
Query: 84 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ 117
GHQ M + ++SG D +V +W I+
Sbjct: 317 GHQ---SLTSGMELKDNILVSGNADSTVKIWDIK 347
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWN 223
YN H V V CP F S G+D ++LWD R P +++ A D V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWH 235
Query: 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 283
P D+ G +V + + +N S + HS + + +S S S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 284 EDGLLNIWD 292
ED + + D
Sbjct: 290 EDCTVAVLD 298
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
D ++G D SV+++D L+ V + + HS+ V CV P K ++F S ED
Sbjct: 150 DGTQAVSGGKDFSVKVWD---LSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCGED 203
Query: 286 GLLNIWDYEK 295
G + +WD K
Sbjct: 204 GRILLWDTRK 213
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 227
H+D V+ ++ Q S G D + +WD + V+K AH ++++CV P D
Sbjct: 138 HDDIVKTLSVFSDGTQAV-SGGKDFSVKVWD--LSQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL--CVQWSPDKSSVFGSSAED 285
+ L+ D + ++D R P + + ++ + V W P+K F E
Sbjct: 195 TIFLSCGEDGRILLWDTRK------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248
Query: 286 G---LLNI 290
G L+NI
Sbjct: 249 GNVSLVNI 256
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GHE V V + P S D + +W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
+ +L S+D V + + NG SPI + H+ V W+P
Sbjct: 111 EYGPXLLVASSDGKVSVVE---FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 250
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 251 GVGSPINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
GHE V V + P S D +I+W GT HD+ ++ V W P
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 226 DDNLILT-GSADNSVRMFDRRNLTSNGVGS-PINKF-EGHSAAVLCVQWS---------- 272
D LIL GS+D ++ + LT G G + K H+ V W+
Sbjct: 115 DYGLILACGSSDGAISL-----LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169
Query: 273 ------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 302
P+ F S D L+ +W E+ G+ E+
Sbjct: 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLL 288
+ T S+D SV++FD R NG I GH V V W+ P ++ S + D +
Sbjct: 28 LATCSSDRSVKIFDVR----NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 289 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 333
IW + E G ++ +HAGH V W D
Sbjct: 84 IIW-------REENGTWEKSH------EHAGHDSSVNSVCWAPHD 115
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 218
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 324
Query: 219 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 378
Query: 278 VFGSSAEDGLLNIW 291
V S+A D L +W
Sbjct: 379 V-ASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 218
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 335
Query: 219 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 389
Query: 278 VFGSSAEDGLLNIW 291
V S+A D L +W
Sbjct: 390 V-ASAAADETLRLW 402
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 55/198 (27%)
Query: 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161
++S +DKS++LW + +DKA V
Sbjct: 398 IVSASRDKSIILWKLTK-------------------------------DDKAY---GVAQ 423
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCV 220
R + GH VEDV SS +F G D L LWD G S V H D+ V
Sbjct: 424 RRL-TGHSHFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSV 478
Query: 221 DWNPLDDNLILTGSADNSVRMFD-----RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275
++ LD+ I++ S D ++++++ + ++ G EGH V CV++SP+
Sbjct: 479 AFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGG--------EGHRDWVSCVRFSPNT 529
Query: 276 -SSVFGSSAEDGLLNIWD 292
S++ D + +W+
Sbjct: 530 LQPTIVSASWDKTVKVWN 547
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 218
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 244
Query: 219 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 245 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 298
Query: 278 VFGSSAEDGLLNIW 291
V S+A D L +W
Sbjct: 299 V-ASAAADETLRLW 311
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 164 IYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHC 219
+YN H +V D S +F + D + LW VIK +D H
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ----NDKVIKTFSGIHNDVVRHL 190
Query: 220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
+DD ++ S D +++ D G + +EGH + V C++ P+ V
Sbjct: 191 A---VVDDGHFISCSNDGLIKLVDXHT------GDVLRTYEGHESFVYCIKLLPNGDIV- 240
Query: 280 GSSAEDGLLNIWDYE 294
S ED + IW E
Sbjct: 241 -SCGEDRTVRIWSKE 254
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 14/168 (8%)
Query: 82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATAKSAGSSGS 138
L H + A + +E L+ DK++ LW I + + D + G
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 139 IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 198
I S DG K D + Y GHE V + P+ + S G+D + +W
Sbjct: 198 FISCS---NDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWS 252
Query: 199 ARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245
G+ VI + + C + I+ GS+DN VR+F +
Sbjct: 253 KENGSLKQVITLPAISIWSVDCXS-----NGDIIVGSSDNLVRIFSQE 295
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 154
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 214
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 65/281 (23%)
Query: 13 FNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
+N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTTFT 181
Query: 72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
G T +L++ P +SG D S LW +++ +
Sbjct: 182 GHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC---------- 218
Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
R + GHE + + F P + F + DD
Sbjct: 219 ------------------------------RQTFTGHESDINAICFFP-NGNAFATGSDD 247
Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
+ L+D R + + V ++ L+L G D + ++D G
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
V GH V C+ + D +V + + D L IW+
Sbjct: 307 V------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 89
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 154
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 214
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 65/281 (23%)
Query: 13 FNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
+N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTTFT 181
Query: 72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
G T +L++ P +SG D S LW +++ +
Sbjct: 182 GHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC---------- 218
Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
R + GHE + + F P + F + DD
Sbjct: 219 ------------------------------RQTFTGHESDINAICFFP-NGNAFATGSDD 247
Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
+ L+D R + + V ++ L+L G D + ++D G
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
V GH V C+ + D +V + + D L IW+
Sbjct: 307 V------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 89
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 123
Query: 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 154
GG D +++++ T + + AG +G + + GD
Sbjct: 124 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 214
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 237
Query: 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245
+D++ + + P + N TGS D + R+FD R
Sbjct: 238 SDINAICFFP-NGNAFATGSDDATCRLFDLR 267
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 65/281 (23%)
Query: 13 FNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
+N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 135 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTTFT 192
Query: 72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
G T +L++ P +SG D S LW +++ +
Sbjct: 193 GHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC---------- 229
Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
R + GHE + + F P + F + DD
Sbjct: 230 ------------------------------RQTFTGHESDINAICFFP-NGNAFATGSDD 258
Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
+ L+D R + + V ++ L+L G D + ++D G
Sbjct: 259 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 317
Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
V GH V C+ + D +V + + D L IW+
Sbjct: 318 V------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 351
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
GH A + + W D S + S+++DG L IWD K
Sbjct: 62 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 100
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 154
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 214
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 65/281 (23%)
Query: 13 FNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
+N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTTFT 181
Query: 72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
G T +L++ P +SG D S LW +++ +
Sbjct: 182 GHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC---------- 218
Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
R + GHE + + F P + F + DD
Sbjct: 219 ------------------------------RQTFTGHESDINAICFFP-NGNAFATGSDD 247
Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
+ L+D R + + V ++ L+L G D + ++D G
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
V GH V C+ + D +V + + D L IW+
Sbjct: 307 V------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNK 89
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 154
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 214
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 65/281 (23%)
Query: 13 FNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
+N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTTFT 181
Query: 72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
G T +L++ P +SG D S LW +++ +
Sbjct: 182 GHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC---------- 218
Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
R + GHE + + F P + F + DD
Sbjct: 219 ------------------------------RQTFTGHESDINAICFFP-NGNAFATGSDD 247
Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
+ L+D R + + V ++ L+L G D + ++D G
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
V GH V C+ + D +V + + D L IW+
Sbjct: 307 V------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNK 89
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAED 285
D ILT S D + ++D + G + F GH A VLC+ +P ++ + F S D
Sbjct: 166 DMQILTASGDGTCALWDVES------GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 286 GLLNIWD 292
+WD
Sbjct: 220 KKAMVWD 226
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
+GH VLC+ W DK + SS++DG + +WD
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIV-SSSQDGKVIVWD 92
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 189 GDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247
G+ S L +WD T P IK E A + + +P D + + +D ++ ++D N
Sbjct: 116 GEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ 173
Query: 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 302
T + +F+GH+ C+ S D + ++ + D + WD + G++++Q
Sbjct: 174 TL------VRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRSWDLRE-GRQLQQ 220
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
D + +G+ D + +FD G ++ EGH+ + + +SPD S + ++++D
Sbjct: 175 DGKYLASGAIDGIINIFDI------ATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDD 227
Query: 286 GLLNIWDYE 294
G + I+D +
Sbjct: 228 GYIKIYDVQ 236
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 23/205 (11%)
Query: 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102
+++ +AT T V I+ VE+ +++ ++R IL+ +A P Y+
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSL----DTRGKFILS---------IAYSPDGKYL 179
Query: 103 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158
SG D + ++ I H P + + ++ + DG K D
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD--DGYIKIYDVQH 237
Query: 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 218
G +GH V +V FCP F S D + +WD VGT + H +
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWD--VGTRTCVHTFFDHQDQVW 294
Query: 219 CVDWNPLDDNLILTGSADNSVRMFD 243
V +N ++ G D + ++D
Sbjct: 295 GVKYNGNGSKIVSVGD-DQEIHIYD 318
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 201 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260
+ T ++ + H + + ++P D L++T S D ++++D ++ G
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGT------LS 245
Query: 261 GHSAAVLCVQWSPDKS 276
GH++ VL V + PD +
Sbjct: 246 GHASWVLNVAFCPDDT 261
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 210 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247
EK H A + ++NP D L+ T S D +V+++D RN+
Sbjct: 199 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 236
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLD 226
H+ V F P + D+ + LWD R + E H+ ++ +NP D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 227 DNLILTGSADNSVRMF 242
+LT N +R++
Sbjct: 262 STKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 210 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247
EK H A + ++NP D L+ T S D +V+++D RN+
Sbjct: 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLD 226
H+ V F P + D+ + LWD R + E H+ ++ +NP D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 227 DNLILTGSADNSVRMF 242
+LT N +R++
Sbjct: 263 STKLLTTDQRNEIRVY 278
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 284
+DN ++TG+ D +R++D N + + GH V ++++ V GS+
Sbjct: 130 FEDNYVITGADDKXIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181
Query: 285 DGLLNIWDYEK 295
D + +WD +K
Sbjct: 182 DRTVRVWDIKK 192
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 111/302 (36%), Gaps = 66/302 (21%)
Query: 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQD 87
H + + P + + A DS V IW E +R DL I+ GH++
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDST-VSIWAKEESADR-------TFEMDLLAIIEGHEN 108
Query: 88 NAEFALAMCPTEPYVLSGGKDKSVVLWS-------------IQDH---ITSSATDPATAK 131
+ +A Y+ + +DKSV +W +Q+H + P+ A
Sbjct: 109 EVK-GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167
Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ-EFCSVGD 190
A SS + K D + + + NGHE TV F + CS D
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECV--------AVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219
Query: 191 DSCLILW--------DARVGTSPVIKVEKAHDADLHCVDW--NPL------DDNLILTGS 234
DS + +W D + I + H ++ V W N L D L +
Sbjct: 220 DSTVRVWKYMGDDEDDQQEWVCEAI-LPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE 278
Query: 235 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW-SPDKSSVFGSSAEDGLLNIWDY 293
D ++F +R L +GV IN V+W + ++ + +DG++N W
Sbjct: 279 VDGEWKVFAKRALC-HGV-YEIN----------VVKWLELNGKTILATGGDDGIVNFWSL 326
Query: 294 EK 295
EK
Sbjct: 327 EK 328
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
HD + CVDW P N I+T S D + ++++R +G + A V+WS
Sbjct: 54 HDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKR---PDGTWKQTLVLLRLNRAATFVRWS 109
Query: 273 PDK 275
P++
Sbjct: 110 PNE 112
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 160
Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 310
VL + + S D L +W + + + P TN P
Sbjct: 161 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 222
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 169
Query: 223 NPLDDNLILTGSADNSVRMF 242
+ L + ++ G D+S++++
Sbjct: 170 DLLGEKIMSCG-MDHSLKLW 188
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 159
Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 310
VL + + S D L +W + + + P TN P
Sbjct: 160 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 212
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 222
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 168
Query: 223 NPLDDNLILTGSADNSVRMF 242
+ L + ++ G D+S++++
Sbjct: 169 DLLGEKIMSCG-MDHSLKLW 187
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 219 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 278
C+ W+ D N I+TG + +R++++ G+ +N H A ++ V+W+ D + +
Sbjct: 113 CLAWSH-DGNSIVTGVENGELRLWNK-------TGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 279 FGSSAED 285
E+
Sbjct: 165 ISMDVEN 171
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286
+ L+L+ S D ++R++ G G+ N F GHS +++ W D + S + DG
Sbjct: 259 NKLLLSASDDGTLRIW------HGGNGNSQNCFYGHSQSIVSASWVGDDKVI--SCSMDG 310
Query: 287 LLNIWDYEK 295
+ +W ++
Sbjct: 311 SVRLWSLKQ 319
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 159
Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 310
VL + + S D L +W + + + P TN P
Sbjct: 160 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 212
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 222
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 168
Query: 223 NPLDDNLILTGSADNSVRMF 242
+ L + ++ G D+S++++
Sbjct: 169 DLLGEKIMSCG-MDHSLKLW 187
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 196
Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 310
VL + + S D L +W + + + P TN P
Sbjct: 197 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 249
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 222
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 205
Query: 223 NPLDDNLILTGSADNSVRMF 242
+ L + ++ G D+S++++
Sbjct: 206 DLLGEKIMSCG-MDHSLKLW 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 155
Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 310
VL + + S D L +W + + + P TN P
Sbjct: 156 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 208
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 222
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 164
Query: 223 NPLDDNLILTGSADNSVRMF 242
+ L + ++ G D+S++++
Sbjct: 165 DLLGEKIMSCG-MDHSLKLW 183
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 102/300 (34%), Gaps = 73/300 (24%)
Query: 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89
H V R+ P + +V+ D+ + +WD E + G T+S D+ D++
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSVQDISF----DHS 161
Query: 90 EFALAMCPTEPYV----LSG--------GKDKSVVLWSIQ---DHITSSATDPATAKSAG 134
LA C + + G G D +V SI DHI S++ D
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 135 SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSC 193
+G +K + GH + V V P+ S +D
Sbjct: 222 QTGYCVK----------------------TFTGHREWVRMVR--PNQDGTLIASCSNDQT 257
Query: 194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-------------------LILTGS 234
+ +W V T + H + C+ W P +L+GS
Sbjct: 258 VRVW--VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315
Query: 235 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294
D +++M+D G + GH V V + + S A+D L +WDY+
Sbjct: 316 RDKTIKMWD------VSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYK 368
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 284
+DN ++TG+ D +R++D N + + GH V ++++ V GS+
Sbjct: 130 FEDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181
Query: 285 DGLLNIWDYEK 295
D + +WD +K
Sbjct: 182 DRTVRVWDIKK 192
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-------VGTSP 205
A + S+ + + ED ED+ CS D I+ A+ + TS
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKC----CSWSADGARIMVAAKNKIFLFDIHTSG 836
Query: 206 VI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264
++ ++ H + + D++P ++L + + V +++ + S + GH +
Sbjct: 837 LLGEIHTGHHSTIQYCDFSP-QNHLAVVALSQYCVELWNTDS------RSKVADCRGHLS 889
Query: 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
V V +SPD SS F +S++D + +W+ +KV K
Sbjct: 890 WVHGVMFSPDGSS-FLTSSDDQTIRLWETKKVCK 922
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWN 223
Y+ H + V F SS + G C + LWD + H ++ ++
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 758
Query: 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN--KF--------EGHSAAVLCVQWSP 273
P DD L+ + SAD +++++D TS IN +F E V C WS
Sbjct: 759 P-DDKLLASCSADGTLKLWDA---TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSA 814
Query: 274 DKSSVF 279
D + +
Sbjct: 815 DGARIM 820
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP---------VIKVEKAHDADL 217
GH++TV+D +S S D + +W+ G V+ + +HDA
Sbjct: 1048 GHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA-- 1103
Query: 218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
+ SAD + +++ S + P+++ GH+ V C +S D S+
Sbjct: 1104 ----------TKFSSTSADKTAKIW------SFDLLLPLHELRGHNGCVRCSAFSVD-ST 1146
Query: 278 VFGSSAEDGLLNIWD 292
+ + ++G + IW+
Sbjct: 1147 LLATGDDNGEIRIWN 1161
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 167 GHEDTVEDVTFCPS-------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 219
GH + V D+ + Q SVGDD LI+W R+ I +
Sbjct: 135 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--RLTDEGPILAGYPLSSPGIS 192
Query: 220 VDWNPLDDNLILTGSADNSVRMFD 243
V + P + N ++ G + ++R+FD
Sbjct: 193 VQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 167 GHEDTVEDVTFCPS-------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 219
GH + V D+ + Q SVGDD LI+W R+ I +
Sbjct: 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--RLTDEGPILAGYPLSSPGIS 191
Query: 220 VDWNPLDDNLILTGSADNSVRMFD 243
V + P + N ++ G + ++R+FD
Sbjct: 192 VQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 102 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 150
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 174
Query: 151 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 207
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 231
Query: 208 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 265
A D ++ + ++P + L + +++F D + L V +F G+SAA
Sbjct: 232 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSAA 284
Query: 266 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 291
+ + WS D ++F + D ++ +W
Sbjct: 285 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 313
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261
HC +WNP++ + I+ G+ D ++ F R N +P FE
Sbjct: 133 HCFEWNPIESS-IVVGNEDGELQFFSIR---KNSENTPEFYFES 172
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc Ion
And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 195 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235
I D+R T ++ E AH + VDW ++ LIL G +
Sbjct: 59 IYLDSRPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGS 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,193,759
Number of Sequences: 62578
Number of extensions: 516959
Number of successful extensions: 1666
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 289
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)