Query 016547
Match_columns 387
No_of_seqs 576 out of 1351
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 07:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-53 3.9E-58 332.2 25.3 311 24-387 108-461 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-49 2.3E-54 314.8 22.4 267 28-387 172-440 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-48 7.8E-53 306.1 20.1 248 24-357 210-458 (459)
4 KOG0286 G-protein beta subunit 100.0 6.2E-45 1.3E-49 274.8 30.7 281 21-387 45-325 (343)
5 KOG0271 Notchless-like WD40 re 100.0 2.1E-46 4.6E-51 292.7 21.4 288 25-357 151-479 (480)
6 KOG0264 Nucleosome remodeling 100.0 1.1E-43 2.4E-48 283.6 27.4 300 20-368 113-413 (422)
7 KOG0263 Transcription initiati 100.0 5.4E-44 1.2E-48 303.8 27.0 270 17-362 364-652 (707)
8 KOG0295 WD40 repeat-containing 100.0 3.8E-44 8.2E-49 278.3 20.9 271 24-386 101-385 (406)
9 KOG0279 G protein beta subunit 100.0 2.5E-42 5.5E-47 259.0 29.3 262 23-374 7-271 (315)
10 KOG0284 Polyadenylation factor 100.0 1.5E-44 3.3E-49 284.5 16.9 262 32-387 97-360 (464)
11 KOG0265 U5 snRNP-specific prot 100.0 7.9E-43 1.7E-47 264.4 25.0 275 24-387 40-318 (338)
12 KOG0315 G-protein beta subunit 100.0 1.8E-41 3.9E-46 250.5 29.1 276 25-386 33-309 (311)
13 KOG0279 G protein beta subunit 100.0 3.7E-40 8E-45 247.5 27.4 254 24-359 56-313 (315)
14 KOG0645 WD40 repeat protein [G 100.0 2.6E-39 5.7E-44 241.9 31.2 283 22-387 5-290 (312)
15 KOG0319 WD40-repeat-containing 100.0 2.5E-40 5.4E-45 279.1 26.9 277 24-387 316-599 (775)
16 KOG0273 Beta-transducin family 100.0 4.1E-40 8.8E-45 264.2 26.1 261 30-386 234-502 (524)
17 KOG0286 G-protein beta subunit 100.0 3.6E-39 7.7E-44 243.7 28.1 246 30-357 96-343 (343)
18 KOG0263 Transcription initiati 100.0 6.5E-40 1.4E-44 279.0 26.1 246 23-333 443-697 (707)
19 KOG0273 Beta-transducin family 100.0 8.5E-40 1.8E-44 262.3 25.0 280 25-387 172-462 (524)
20 KOG0316 Conserved WD40 repeat- 100.0 1.2E-39 2.7E-44 238.9 23.5 272 20-387 6-280 (307)
21 KOG0284 Polyadenylation factor 100.0 9.9E-41 2.1E-45 263.0 15.5 248 27-360 134-381 (464)
22 KOG0277 Peroxisomal targeting 100.0 1.8E-39 4E-44 240.6 21.2 261 18-358 47-308 (311)
23 KOG0318 WD40 repeat stress pro 100.0 4.2E-38 9.2E-43 256.0 30.9 317 19-386 178-582 (603)
24 KOG0266 WD40 repeat-containing 100.0 1.3E-38 2.7E-43 277.6 29.8 267 30-387 158-432 (456)
25 KOG0285 Pleiotropic regulator 100.0 5.2E-39 1.1E-43 249.4 23.7 245 25-359 145-389 (460)
26 KOG0315 G-protein beta subunit 100.0 2.5E-38 5.5E-43 233.8 25.8 258 43-386 9-267 (311)
27 KOG0277 Peroxisomal targeting 100.0 1E-38 2.2E-43 236.6 23.3 269 35-387 12-288 (311)
28 KOG0282 mRNA splicing factor [ 100.0 2.9E-40 6.4E-45 265.8 15.6 280 19-387 202-484 (503)
29 KOG0645 WD40 repeat protein [G 100.0 7.8E-38 1.7E-42 234.0 27.0 254 26-359 56-311 (312)
30 KOG0291 WD40-repeat-containing 100.0 1.7E-37 3.6E-42 262.8 30.2 333 18-387 132-530 (893)
31 KOG0295 WD40 repeat-containing 100.0 2E-38 4.3E-43 246.6 20.6 248 25-358 144-405 (406)
32 KOG0281 Beta-TrCP (transducin 100.0 6.2E-39 1.3E-43 248.4 15.4 259 30-386 196-458 (499)
33 KOG0276 Vesicle coat complex C 100.0 1.4E-37 2.9E-42 258.2 23.7 266 28-385 10-277 (794)
34 KOG0296 Angio-associated migra 100.0 1.4E-37 2.9E-42 242.0 21.7 309 24-387 57-378 (399)
35 KOG0291 WD40-repeat-containing 100.0 9.8E-37 2.1E-41 258.2 28.1 264 25-360 344-613 (893)
36 cd00200 WD40 WD40 domain, foun 100.0 5.2E-36 1.1E-40 250.2 32.1 267 27-387 5-271 (289)
37 KOG0292 Vesicle coat complex C 100.0 1.7E-36 3.7E-41 261.1 24.3 272 30-387 8-302 (1202)
38 KOG0281 Beta-TrCP (transducin 100.0 9.1E-38 2E-42 241.9 14.5 251 23-361 229-479 (499)
39 KOG0313 Microtubule binding pr 100.0 6.7E-36 1.5E-40 233.8 24.4 280 24-359 137-418 (423)
40 KOG0313 Microtubule binding pr 100.0 1.2E-35 2.5E-40 232.4 24.8 275 24-386 98-398 (423)
41 KOG0319 WD40-repeat-containing 100.0 7.7E-36 1.7E-40 252.2 24.7 259 26-359 360-619 (775)
42 PLN00181 protein SPA1-RELATED; 100.0 1.7E-34 3.6E-39 270.3 35.8 287 27-387 479-773 (793)
43 KOG0293 WD40 repeat-containing 100.0 1.1E-35 2.3E-40 235.2 23.3 278 19-387 212-492 (519)
44 KOG0318 WD40 repeat stress pro 100.0 4.4E-34 9.4E-39 232.8 30.8 283 25-385 53-371 (603)
45 KOG0265 U5 snRNP-specific prot 100.0 8.2E-35 1.8E-39 221.0 24.1 247 26-357 85-336 (338)
46 KOG0275 Conserved WD40 repeat- 100.0 3.2E-36 6.8E-41 231.6 16.6 281 22-387 204-489 (508)
47 KOG0266 WD40 repeat-containing 100.0 8.7E-35 1.9E-39 253.6 27.7 248 28-359 200-454 (456)
48 KOG0643 Translation initiation 100.0 1.2E-35 2.5E-40 222.1 18.4 300 25-359 4-317 (327)
49 PTZ00421 coronin; Provisional 100.0 1.5E-33 3.3E-38 244.6 32.4 288 29-387 18-313 (493)
50 KOG0310 Conserved WD40 repeat- 100.0 1.9E-34 4.1E-39 232.8 22.3 266 29-387 24-289 (487)
51 KOG0268 Sof1-like rRNA process 100.0 3.5E-35 7.5E-40 228.6 17.0 286 26-360 61-346 (433)
52 KOG0285 Pleiotropic regulator 100.0 3.7E-34 8.1E-39 222.6 22.6 254 25-360 187-440 (460)
53 KOG0300 WD40 repeat-containing 100.0 6.2E-34 1.3E-38 218.3 22.1 305 25-386 142-453 (481)
54 KOG0283 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 245.3 23.7 255 29-361 265-578 (712)
55 KOG1407 WD40 repeat protein [F 100.0 7.9E-34 1.7E-38 211.6 21.3 268 25-387 14-282 (313)
56 KOG0276 Vesicle coat complex C 100.0 6.5E-34 1.4E-38 236.4 22.8 252 3-337 32-285 (794)
57 PTZ00420 coronin; Provisional 100.0 7.8E-33 1.7E-37 241.2 30.6 257 50-387 50-316 (568)
58 KOG0293 WD40 repeat-containing 100.0 5.4E-34 1.2E-38 225.6 21.0 250 24-360 262-514 (519)
59 KOG0640 mRNA cleavage stimulat 100.0 9.7E-34 2.1E-38 216.4 21.5 282 21-359 102-426 (430)
60 cd00200 WD40 WD40 domain, foun 100.0 2.1E-32 4.5E-37 228.4 31.6 245 25-357 45-289 (289)
61 KOG0305 Anaphase promoting com 100.0 3E-33 6.6E-38 234.1 25.6 242 31-360 217-462 (484)
62 KOG1446 Histone H3 (Lys4) meth 100.0 3.8E-32 8.2E-37 208.4 28.9 264 30-387 13-285 (311)
63 PLN00181 protein SPA1-RELATED; 100.0 2.2E-32 4.7E-37 256.1 33.7 263 28-358 529-792 (793)
64 KOG0772 Uncharacterized conser 100.0 2.6E-33 5.7E-38 227.8 22.8 305 19-387 155-467 (641)
65 KOG0302 Ribosome Assembly prot 100.0 9.5E-33 2.1E-37 216.1 23.4 281 19-343 140-430 (440)
66 KOG0282 mRNA splicing factor [ 100.0 1.8E-33 3.9E-38 226.9 18.1 251 23-357 250-503 (503)
67 KOG0292 Vesicle coat complex C 100.0 8.6E-33 1.9E-37 238.5 23.3 250 25-359 45-321 (1202)
68 KOG0306 WD40-repeat-containing 100.0 2.7E-32 5.9E-37 231.4 25.9 271 22-387 364-644 (888)
69 KOG0278 Serine/threonine kinas 100.0 1.5E-32 3.3E-37 203.6 20.4 285 26-360 9-298 (334)
70 KOG0647 mRNA export protein (c 100.0 4.8E-32 1E-36 206.2 23.5 266 30-386 26-302 (347)
71 KOG1332 Vesicle coat complex C 100.0 7.5E-33 1.6E-37 204.4 18.2 259 28-359 8-286 (299)
72 KOG0641 WD40 repeat protein [G 100.0 3E-30 6.4E-35 188.9 31.6 309 19-359 20-349 (350)
73 KOG0306 WD40-repeat-containing 100.0 3.7E-32 8E-37 230.6 24.0 260 24-360 406-665 (888)
74 PTZ00421 coronin; Provisional 100.0 8.3E-31 1.8E-35 227.6 32.7 216 26-296 70-292 (493)
75 KOG0274 Cdc4 and related F-box 100.0 9.5E-32 2.1E-36 233.7 25.7 248 24-374 242-491 (537)
76 KOG0973 Histone transcription 100.0 2.2E-31 4.8E-36 235.0 27.2 295 30-387 12-335 (942)
77 KOG0316 Conserved WD40 repeat- 100.0 1.7E-31 3.6E-36 196.4 21.9 224 77-383 8-231 (307)
78 KOG0288 WD40 repeat protein Ti 100.0 5.9E-33 1.3E-37 219.7 14.8 273 23-387 167-441 (459)
79 KOG0294 WD40 repeat-containing 100.0 6E-31 1.3E-35 201.5 25.1 242 24-359 36-281 (362)
80 KOG0299 U3 snoRNP-associated p 100.0 5.1E-31 1.1E-35 211.6 25.1 294 25-387 136-435 (479)
81 KOG0274 Cdc4 and related F-box 100.0 3.4E-31 7.4E-36 230.2 24.3 254 30-385 207-462 (537)
82 KOG0264 Nucleosome remodeling 100.0 4.5E-31 9.6E-36 211.7 22.8 229 22-295 168-405 (422)
83 KOG0296 Angio-associated migra 100.0 1.5E-30 3.2E-35 203.0 24.3 286 25-359 100-398 (399)
84 KOG0305 Anaphase promoting com 100.0 1.3E-30 2.9E-35 218.4 25.7 256 37-387 183-441 (484)
85 KOG0973 Histone transcription 100.0 5.5E-31 1.2E-35 232.5 24.3 261 25-360 63-356 (942)
86 KOG0308 Conserved WD40 repeat- 100.0 9.5E-32 2.1E-36 224.5 18.4 256 29-361 19-287 (735)
87 KOG0310 Conserved WD40 repeat- 100.0 8.9E-31 1.9E-35 211.7 22.8 242 30-359 67-309 (487)
88 KOG0289 mRNA splicing factor [ 100.0 2.8E-30 6E-35 205.9 24.2 264 32-385 220-484 (506)
89 KOG0269 WD40 repeat-containing 100.0 1.3E-31 2.8E-36 228.0 16.8 240 33-343 89-331 (839)
90 KOG1407 WD40 repeat protein [F 100.0 1.1E-29 2.4E-34 189.6 24.8 257 21-359 54-311 (313)
91 KOG0283 WD40 repeat-containing 100.0 2.6E-30 5.7E-35 222.5 24.1 263 81-378 261-545 (712)
92 KOG2445 Nuclear pore complex c 100.0 1.6E-29 3.4E-34 193.1 25.6 280 28-359 10-318 (361)
93 PTZ00420 coronin; Provisional 100.0 6.5E-29 1.4E-33 216.8 31.8 239 25-333 68-318 (568)
94 KOG0269 WD40 repeat-containing 100.0 1.2E-30 2.6E-35 222.1 20.2 277 31-386 39-318 (839)
95 KOG0640 mRNA cleavage stimulat 100.0 1.8E-30 4E-35 198.6 17.5 236 78-375 104-345 (430)
96 KOG0275 Conserved WD40 repeat- 100.0 1E-30 2.2E-35 201.3 16.3 245 27-357 259-507 (508)
97 KOG0289 mRNA splicing factor [ 100.0 2.4E-29 5.2E-34 200.6 23.9 250 25-358 255-505 (506)
98 KOG0299 U3 snoRNP-associated p 100.0 2.2E-29 4.8E-34 202.2 23.6 246 28-359 199-456 (479)
99 KOG1036 Mitotic spindle checkp 100.0 1E-28 2.2E-33 188.8 25.8 261 31-386 13-283 (323)
100 KOG0270 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 202.3 21.9 260 32-359 174-449 (463)
101 KOG0288 WD40 repeat protein Ti 100.0 4.6E-30 9.9E-35 203.4 18.5 242 26-357 214-459 (459)
102 KOG0772 Uncharacterized conser 100.0 1.6E-29 3.4E-34 206.0 17.7 243 77-387 158-419 (641)
103 KOG2096 WD40 repeat protein [G 100.0 9.8E-28 2.1E-32 184.3 26.2 299 24-387 79-383 (420)
104 KOG1332 Vesicle coat complex C 100.0 3.3E-29 7.2E-34 185.3 15.9 242 82-387 7-266 (299)
105 KOG0301 Phospholipase A2-activ 100.0 3.2E-28 6.9E-33 205.1 23.7 242 21-360 47-289 (745)
106 KOG0301 Phospholipase A2-activ 100.0 3.5E-28 7.6E-33 204.8 23.3 259 24-385 7-267 (745)
107 KOG0643 Translation initiation 100.0 5.5E-28 1.2E-32 181.2 21.4 231 81-387 5-241 (327)
108 KOG1007 WD repeat protein TSSC 100.0 6.9E-28 1.5E-32 182.7 21.8 297 8-359 42-361 (370)
109 KOG0646 WD40 repeat protein [G 100.0 3.5E-28 7.6E-33 195.7 21.3 243 27-334 77-332 (476)
110 KOG0646 WD40 repeat protein [G 100.0 1.1E-27 2.3E-32 192.9 24.0 267 45-387 51-329 (476)
111 KOG4283 Transcription-coupled 100.0 3E-28 6.5E-33 185.2 19.6 235 82-360 39-277 (397)
112 KOG0300 WD40 repeat-containing 100.0 3.8E-28 8.2E-33 186.7 20.3 266 23-360 182-477 (481)
113 KOG0308 Conserved WD40 repeat- 100.0 3.7E-29 8E-34 209.2 16.0 230 92-387 29-265 (735)
114 KOG0639 Transducin-like enhanc 100.0 1.2E-28 2.7E-33 200.3 18.1 272 23-386 411-683 (705)
115 KOG1063 RNA polymerase II elon 100.0 1.1E-27 2.4E-32 201.8 24.1 337 18-387 178-674 (764)
116 KOG1273 WD40 repeat protein [G 100.0 1.9E-27 4E-32 182.5 21.9 277 28-387 21-303 (405)
117 KOG4283 Transcription-coupled 100.0 3.6E-27 7.8E-32 179.4 21.9 302 29-359 41-365 (397)
118 KOG0278 Serine/threonine kinas 100.0 2.5E-28 5.5E-33 181.3 14.4 205 25-296 94-299 (334)
119 KOG0267 Microtubule severing p 100.0 1.1E-28 2.4E-33 208.8 12.0 234 24-337 21-254 (825)
120 KOG0650 WD40 repeat nucleolar 100.0 7E-27 1.5E-31 194.0 22.1 311 20-387 389-715 (733)
121 KOG1539 WD repeat protein [Gen 100.0 1.7E-26 3.8E-31 198.5 25.2 310 23-387 235-627 (910)
122 KOG2919 Guanine nucleotide-bin 100.0 2.4E-26 5.3E-31 177.0 23.2 280 34-387 52-350 (406)
123 KOG1036 Mitotic spindle checkp 100.0 9E-26 2E-30 172.8 25.9 255 3-342 32-295 (323)
124 KOG0267 Microtubule severing p 100.0 1.1E-28 2.3E-33 208.9 10.9 244 45-387 5-248 (825)
125 KOG2055 WD40 repeat protein [G 100.0 2.4E-26 5.1E-31 185.0 23.7 289 31-359 213-512 (514)
126 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.3E-25 5.1E-30 187.3 31.3 262 29-387 28-300 (300)
127 KOG1274 WD40 repeat protein [G 100.0 7.3E-26 1.6E-30 196.8 28.3 263 28-387 10-280 (933)
128 KOG4328 WD40 protein [Function 100.0 1.2E-26 2.7E-31 186.4 21.3 286 28-387 183-474 (498)
129 KOG0307 Vesicle coat complex C 100.0 1.4E-27 3E-32 212.3 17.1 279 9-361 42-329 (1049)
130 KOG0302 Ribosome Assembly prot 100.0 8.1E-27 1.7E-31 183.1 19.3 229 82-359 147-378 (440)
131 KOG1446 Histone H3 (Lys4) meth 100.0 2.9E-25 6.3E-30 170.8 27.4 241 29-359 54-303 (311)
132 KOG1408 WD40 repeat protein [F 100.0 3.5E-26 7.5E-31 193.8 24.0 291 21-387 359-693 (1080)
133 KOG2048 WD40 repeat protein [G 100.0 1.6E-25 3.4E-30 188.5 27.6 268 30-385 24-299 (691)
134 KOG0321 WD40 repeat-containing 100.0 5.5E-26 1.2E-30 190.0 23.4 279 36-387 54-370 (720)
135 KOG4378 Nuclear protein COP1 [ 100.0 1.9E-26 4.2E-31 187.3 19.8 265 34-387 37-303 (673)
136 KOG0321 WD40 repeat-containing 99.9 5.3E-26 1.2E-30 190.1 22.0 282 25-361 94-393 (720)
137 KOG0307 Vesicle coat complex C 99.9 3.1E-27 6.8E-32 210.0 14.7 278 35-387 10-306 (1049)
138 KOG0641 WD40 repeat protein [G 99.9 1.6E-24 3.4E-29 159.1 25.7 240 89-387 34-329 (350)
139 KOG0270 WD40 repeat-containing 99.9 2.1E-25 4.6E-30 178.7 23.1 214 99-360 192-405 (463)
140 KOG0647 mRNA export protein (c 99.9 3.8E-25 8.2E-30 168.9 22.5 239 25-343 66-315 (347)
141 KOG0294 WD40 repeat-containing 99.9 4.8E-25 1E-29 169.3 22.7 253 47-385 4-257 (362)
142 KOG1408 WD40 repeat protein [F 99.9 1.7E-25 3.6E-30 189.7 20.4 246 28-359 456-713 (1080)
143 KOG0290 Conserved WD40 repeat- 99.9 6.7E-25 1.5E-29 166.7 21.5 253 27-341 92-355 (364)
144 KOG0639 Transducin-like enhanc 99.9 1.3E-25 2.8E-30 182.9 18.0 240 30-358 464-703 (705)
145 KOG2106 Uncharacterized conser 99.9 1.9E-23 4.1E-28 170.4 30.3 270 31-359 246-521 (626)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.1E-24 2E-28 177.6 29.6 253 44-387 1-258 (300)
147 KOG0268 Sof1-like rRNA process 99.9 2.6E-26 5.7E-31 179.4 12.5 266 78-386 58-324 (433)
148 KOG2445 Nuclear pore complex c 99.9 3.2E-24 7E-29 164.3 23.2 249 82-386 9-297 (361)
149 KOG2106 Uncharacterized conser 99.9 3.6E-24 7.8E-29 174.5 23.0 298 28-358 284-625 (626)
150 KOG0290 Conserved WD40 repeat- 99.9 1.7E-23 3.6E-28 159.2 24.3 299 21-387 34-345 (364)
151 KOG1587 Cytoplasmic dynein int 99.9 1.5E-23 3.2E-28 181.3 26.6 281 24-367 235-524 (555)
152 KOG1007 WD repeat protein TSSC 99.9 6.4E-24 1.4E-28 161.3 21.2 263 53-386 39-339 (370)
153 KOG0642 Cell-cycle nuclear pro 99.9 5.8E-25 1.3E-29 181.5 16.8 279 26-378 289-574 (577)
154 KOG2096 WD40 repeat protein [G 99.9 2E-24 4.3E-29 166.3 17.9 220 79-359 79-308 (420)
155 KOG4328 WD40 protein [Function 99.9 2E-24 4.4E-29 173.8 17.7 220 78-359 178-399 (498)
156 KOG4378 Nuclear protein COP1 [ 99.9 2.4E-24 5.2E-29 175.3 18.2 225 33-333 81-305 (673)
157 KOG1445 Tumor-specific antigen 99.9 3.7E-24 8E-29 179.5 19.3 122 216-360 629-751 (1012)
158 KOG1539 WD repeat protein [Gen 99.9 1.8E-22 3.8E-27 174.2 27.5 312 24-387 195-586 (910)
159 KOG1188 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 163.4 18.3 251 45-359 41-346 (376)
160 KOG1063 RNA polymerase II elon 99.9 8.3E-23 1.8E-27 172.7 24.0 339 4-386 30-416 (764)
161 KOG2055 WD40 repeat protein [G 99.9 1.1E-22 2.3E-27 164.2 22.4 229 88-387 214-445 (514)
162 KOG4227 WD40 repeat protein [G 99.9 2.7E-23 5.8E-28 164.6 18.5 280 24-359 49-387 (609)
163 KOG0322 G-protein beta subunit 99.9 7.6E-23 1.7E-27 153.5 19.7 289 27-358 10-322 (323)
164 KOG1274 WD40 repeat protein [G 99.9 9.5E-22 2.1E-26 171.5 24.2 223 30-338 55-287 (933)
165 KOG0303 Actin-binding protein 99.9 1.1E-21 2.3E-26 155.5 21.3 216 80-360 75-295 (472)
166 KOG0303 Actin-binding protein 99.9 1.8E-21 3.9E-26 154.3 21.7 215 27-296 77-296 (472)
167 KOG2048 WD40 repeat protein [G 99.9 6.5E-21 1.4E-25 161.0 26.4 256 21-360 59-320 (691)
168 KOG2919 Guanine nucleotide-bin 99.9 4.7E-21 1E-25 148.1 22.1 245 29-341 102-359 (406)
169 KOG1034 Transcriptional repres 99.9 8E-22 1.7E-26 152.6 17.9 258 28-359 86-383 (385)
170 KOG1034 Transcriptional repres 99.9 2.9E-21 6.3E-26 149.5 20.6 271 24-360 31-338 (385)
171 KOG1009 Chromatin assembly com 99.9 3.3E-21 7.2E-26 153.3 20.8 184 30-245 12-195 (434)
172 KOG0650 WD40 repeat nucleolar 99.9 1.4E-21 3.1E-26 162.7 19.0 233 76-387 390-660 (733)
173 KOG0649 WD40 repeat protein [G 99.9 2.1E-20 4.5E-25 139.0 22.1 254 32-359 11-274 (325)
174 KOG1273 WD40 repeat protein [G 99.9 3.1E-21 6.6E-26 148.7 17.6 200 91-363 27-230 (405)
175 KOG1538 Uncharacterized conser 99.9 8.6E-21 1.9E-25 160.4 21.3 273 33-359 14-293 (1081)
176 KOG0644 Uncharacterized conser 99.9 1.2E-22 2.6E-27 175.3 9.9 261 25-387 184-448 (1113)
177 COG2319 FOG: WD40 repeat [Gene 99.9 6.5E-19 1.4E-23 156.1 31.7 269 26-385 60-336 (466)
178 KOG1587 Cytoplasmic dynein int 99.9 8.1E-20 1.8E-24 158.4 24.2 240 53-361 221-474 (555)
179 KOG1334 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 151.6 18.3 295 25-387 136-446 (559)
180 KOG1517 Guanine nucleotide bin 99.9 1.9E-19 4.2E-24 159.6 25.1 284 29-387 1062-1361(1387)
181 KOG4227 WD40 repeat protein [G 99.9 1.1E-19 2.3E-24 144.4 19.7 184 78-301 48-232 (609)
182 KOG1310 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 154.8 15.6 235 78-360 42-304 (758)
183 KOG1445 Tumor-specific antigen 99.9 7.1E-20 1.5E-24 154.1 18.6 234 10-296 607-846 (1012)
184 PRK11028 6-phosphogluconolacto 99.9 1.1E-17 2.3E-22 142.0 32.2 266 22-359 25-304 (330)
185 PRK01742 tolB translocation pr 99.9 1.2E-19 2.7E-24 158.4 20.7 237 53-387 183-425 (429)
186 KOG1310 WD40 repeat protein [G 99.8 3.6E-20 7.8E-25 153.2 15.6 231 25-300 44-309 (758)
187 KOG1009 Chromatin assembly com 99.8 1.2E-19 2.6E-24 144.5 17.2 258 82-387 8-292 (434)
188 KOG1963 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 150.9 25.8 266 28-360 202-539 (792)
189 KOG1240 Protein kinase contain 99.8 1.2E-18 2.6E-23 156.9 24.8 285 23-361 1040-1336(1431)
190 KOG1523 Actin-related protein 99.8 6.8E-19 1.5E-23 136.1 19.8 222 89-360 12-237 (361)
191 KOG1523 Actin-related protein 99.8 1.1E-18 2.3E-23 135.1 20.8 217 30-297 9-239 (361)
192 KOG1188 WD40 repeat protein [G 99.8 1.4E-19 3E-24 141.0 16.0 196 100-361 41-244 (376)
193 COG2319 FOG: WD40 repeat [Gene 99.8 6.9E-17 1.5E-21 143.1 34.2 251 22-360 146-401 (466)
194 KOG0771 Prolactin regulatory e 99.8 2.7E-19 5.9E-24 143.3 16.4 200 35-295 148-355 (398)
195 KOG0649 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 128.9 18.2 231 89-385 12-254 (325)
196 KOG1524 WD40 repeat-containing 99.8 1.7E-18 3.7E-23 143.0 18.9 232 29-337 12-243 (737)
197 KOG1524 WD40 repeat-containing 99.8 3E-18 6.5E-23 141.6 17.9 209 44-356 75-283 (737)
198 KOG0642 Cell-cycle nuclear pro 99.8 2.4E-18 5.2E-23 142.8 17.4 225 21-296 334-563 (577)
199 PRK03629 tolB translocation pr 99.8 9.1E-17 2E-21 140.0 28.2 240 55-387 180-427 (429)
200 KOG1517 Guanine nucleotide bin 99.8 8.3E-18 1.8E-22 149.5 21.2 259 31-360 1109-1382(1387)
201 KOG2110 Uncharacterized conser 99.8 1.4E-16 3.1E-21 125.8 24.6 237 31-362 5-251 (391)
202 KOG0771 Prolactin regulatory e 99.8 5.1E-18 1.1E-22 136.1 16.5 202 91-359 148-354 (398)
203 KOG2394 WD40 protein DMR-N9 [G 99.8 3.4E-17 7.4E-22 135.3 21.4 140 169-331 219-384 (636)
204 KOG0322 G-protein beta subunit 99.8 5.6E-18 1.2E-22 127.7 15.3 241 77-387 5-303 (323)
205 PRK11028 6-phosphogluconolacto 99.8 3.8E-16 8.3E-21 132.5 28.2 244 46-359 4-258 (330)
206 KOG2139 WD40 repeat protein [G 99.8 1E-16 2.2E-21 126.3 22.5 276 30-359 97-383 (445)
207 KOG1272 WD40-repeat-containing 99.8 6E-19 1.3E-23 143.0 10.3 258 34-387 132-389 (545)
208 PRK04922 tolB translocation pr 99.8 1.1E-16 2.3E-21 140.2 24.9 239 54-387 184-432 (433)
209 PRK01742 tolB translocation pr 99.8 2.3E-17 5.1E-22 144.1 20.4 223 26-332 198-426 (429)
210 PRK05137 tolB translocation pr 99.8 4.7E-16 1E-20 136.4 28.4 239 54-387 182-432 (435)
211 KOG2139 WD40 repeat protein [G 99.8 1.6E-15 3.5E-20 119.7 26.6 218 30-296 139-385 (445)
212 KOG1963 WD40 repeat protein [G 99.8 1.8E-16 4E-21 138.5 23.2 287 28-360 12-323 (792)
213 KOG1538 Uncharacterized conser 99.8 1.4E-17 3E-22 141.3 15.7 259 3-295 28-294 (1081)
214 PRK02889 tolB translocation pr 99.8 7E-16 1.5E-20 134.7 25.0 226 82-387 191-424 (427)
215 KOG0644 Uncharacterized conser 99.8 5.5E-18 1.2E-22 147.0 10.3 223 79-387 183-405 (1113)
216 KOG2110 Uncharacterized conser 99.7 2E-14 4.4E-19 113.8 28.5 197 33-297 48-251 (391)
217 PF08662 eIF2A: Eukaryotic tra 99.7 5.4E-16 1.2E-20 119.2 19.2 158 173-359 9-179 (194)
218 KOG1354 Serine/threonine prote 99.7 3.3E-16 7.2E-21 122.7 17.7 302 30-359 24-359 (433)
219 KOG3881 Uncharacterized conser 99.7 5.8E-15 1.3E-19 117.7 22.6 262 29-373 53-328 (412)
220 KOG4497 Uncharacterized conser 99.7 4E-16 8.7E-21 121.5 15.5 284 24-359 41-391 (447)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 1.5E-16 3.2E-21 131.7 13.2 178 179-387 183-384 (636)
222 KOG1409 Uncharacterized conser 99.7 2.2E-15 4.7E-20 118.1 18.9 217 24-296 17-272 (404)
223 KOG1272 WD40-repeat-containing 99.7 3.4E-17 7.3E-22 133.0 7.2 192 91-360 133-324 (545)
224 KOG4497 Uncharacterized conser 99.7 7.2E-15 1.6E-19 114.7 19.5 270 37-387 14-371 (447)
225 KOG2111 Uncharacterized conser 99.7 3.5E-14 7.5E-19 110.3 22.7 239 35-361 9-258 (346)
226 KOG2111 Uncharacterized conser 99.7 2.1E-13 4.5E-18 106.1 26.9 179 54-297 75-259 (346)
227 PRK03629 tolB translocation pr 99.7 3.9E-14 8.5E-19 123.6 25.3 219 28-331 195-427 (429)
228 PRK04922 tolB translocation pr 99.7 2.2E-14 4.7E-19 125.8 23.7 222 26-331 198-432 (433)
229 KOG2321 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 123.7 18.3 267 22-385 42-321 (703)
230 KOG3881 Uncharacterized conser 99.7 1.2E-14 2.5E-19 116.0 19.5 212 30-295 104-321 (412)
231 PRK02889 tolB translocation pr 99.7 3.5E-14 7.6E-19 124.1 24.1 224 27-332 191-425 (427)
232 PRK00178 tolB translocation pr 99.7 1.7E-13 3.6E-18 120.7 28.1 238 55-387 180-427 (430)
233 PRK05137 tolB translocation pr 99.7 8.1E-14 1.8E-18 122.4 25.6 202 26-295 196-413 (435)
234 TIGR02800 propeller_TolB tol-p 99.7 1.1E-13 2.5E-18 121.7 26.4 237 54-386 170-417 (417)
235 PF10282 Lactonase: Lactonase, 99.7 4.1E-12 8.8E-17 108.0 34.4 282 21-359 26-322 (345)
236 KOG0280 Uncharacterized conser 99.7 5.5E-14 1.2E-18 108.1 20.4 260 32-359 70-333 (339)
237 PRK04792 tolB translocation pr 99.7 2E-13 4.4E-18 119.7 26.9 238 55-387 199-446 (448)
238 PF02239 Cytochrom_D1: Cytochr 99.6 9.9E-13 2.2E-17 111.4 28.8 272 25-374 29-356 (369)
239 KOG1334 WD40 repeat protein [G 99.6 8.2E-15 1.8E-19 120.1 15.5 227 78-358 134-365 (559)
240 PF02239 Cytochrom_D1: Cytochr 99.6 9.8E-13 2.1E-17 111.5 27.9 271 44-387 5-325 (369)
241 PF08662 eIF2A: Eukaryotic tra 99.6 1.7E-13 3.7E-18 105.5 19.1 150 35-245 9-179 (194)
242 KOG2315 Predicted translation 99.6 2.4E-12 5.2E-17 107.8 26.9 154 174-359 222-390 (566)
243 KOG1064 RAVE (regulator of V-A 99.6 1.3E-14 2.9E-19 136.0 13.1 193 29-297 2206-2401(2439)
244 KOG0280 Uncharacterized conser 99.6 2.9E-13 6.4E-18 104.1 18.0 236 52-360 44-285 (339)
245 KOG0309 Conserved WD40 repeat- 99.6 4.1E-14 8.8E-19 122.0 14.6 270 27-361 20-341 (1081)
246 PRK01029 tolB translocation pr 99.6 4.3E-12 9.2E-17 110.5 27.5 186 170-387 231-424 (428)
247 KOG1240 Protein kinase contain 99.6 2.6E-13 5.7E-18 123.3 19.2 222 77-360 1039-1274(1431)
248 COG2706 3-carboxymuconate cycl 99.6 1.5E-10 3.2E-15 92.4 32.0 300 21-386 29-345 (346)
249 KOG4547 WD40 repeat-containing 99.6 1.7E-12 3.7E-17 109.3 22.1 196 41-296 2-222 (541)
250 KOG2321 WD40 repeat protein [G 99.6 2.3E-13 5.1E-18 114.0 16.9 210 35-297 137-346 (703)
251 PRK00178 tolB translocation pr 99.6 5.2E-12 1.1E-16 111.3 25.5 201 26-294 193-406 (430)
252 TIGR02800 propeller_TolB tol-p 99.6 4.4E-12 9.5E-17 111.7 24.6 201 25-293 183-396 (417)
253 KOG4547 WD40 repeat-containing 99.5 1.9E-12 4.1E-17 109.1 19.9 211 97-360 3-221 (541)
254 PRK04792 tolB translocation pr 99.5 6.9E-12 1.5E-16 110.1 24.1 220 28-331 214-446 (448)
255 KOG1409 Uncharacterized conser 99.5 2.4E-12 5.1E-17 101.4 17.1 204 30-246 67-271 (404)
256 KOG2041 WD40 repeat protein [G 99.5 2.4E-12 5.3E-17 111.0 18.6 288 28-385 11-316 (1189)
257 COG5170 CDC55 Serine/threonine 99.5 4.3E-12 9.2E-17 98.8 17.2 308 29-359 24-367 (460)
258 KOG0974 WD-repeat protein WDR6 99.5 4E-12 8.7E-17 113.9 17.5 197 92-361 92-290 (967)
259 PF10282 Lactonase: Lactonase, 99.5 1.2E-09 2.5E-14 93.0 31.3 264 54-387 13-301 (345)
260 KOG0974 WD-repeat protein WDR6 99.5 5.4E-12 1.2E-16 113.1 17.1 190 43-297 98-291 (967)
261 KOG1354 Serine/threonine prote 99.5 3.5E-12 7.5E-17 100.5 14.1 246 89-376 27-313 (433)
262 KOG2314 Translation initiation 99.4 1.4E-10 3E-15 97.4 23.4 298 22-359 241-573 (698)
263 PRK01029 tolB translocation pr 99.4 1.9E-10 4.1E-15 100.3 25.4 206 30-296 183-405 (428)
264 KOG4714 Nucleoporin [Nuclear s 99.4 2.5E-11 5.4E-16 92.1 14.4 212 34-295 39-255 (319)
265 KOG4190 Uncharacterized conser 99.4 5.1E-12 1.1E-16 106.0 11.5 193 22-266 726-921 (1034)
266 PLN02919 haloacid dehalogenase 99.4 1.9E-09 4.1E-14 103.6 29.6 284 36-360 572-889 (1057)
267 KOG1064 RAVE (regulator of V-A 99.4 5.7E-12 1.2E-16 118.9 12.2 187 89-360 2210-2399(2439)
268 COG5354 Uncharacterized protei 99.3 1.8E-09 4E-14 89.9 23.8 275 30-359 31-348 (561)
269 COG5170 CDC55 Serine/threonine 99.3 6.6E-11 1.4E-15 92.3 13.5 234 89-376 28-321 (460)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.1E-08 6.6E-13 82.5 29.8 246 39-373 53-338 (352)
271 COG4946 Uncharacterized protei 99.3 1.9E-08 4.2E-13 83.3 27.1 147 39-246 327-478 (668)
272 KOG0309 Conserved WD40 repeat- 99.3 2.6E-11 5.6E-16 105.1 10.8 219 25-295 108-340 (1081)
273 KOG4532 WD40-like repeat conta 99.3 2.9E-09 6.3E-14 81.5 20.5 235 35-338 71-319 (344)
274 PF04762 IKI3: IKI3 family; I 99.3 7.6E-09 1.6E-13 97.8 27.8 236 30-296 74-335 (928)
275 COG2706 3-carboxymuconate cycl 99.3 3.1E-08 6.8E-13 79.5 26.7 243 53-360 15-275 (346)
276 KOG2314 Translation initiation 99.3 5.5E-09 1.2E-13 88.1 23.2 277 35-359 214-525 (698)
277 PRK04043 tolB translocation pr 99.3 1.5E-08 3.3E-13 87.9 25.9 195 89-359 189-400 (419)
278 KOG4532 WD40-like repeat conta 99.2 6.1E-09 1.3E-13 79.8 19.9 230 51-361 49-284 (344)
279 PF15492 Nbas_N: Neuroblastoma 99.2 4.6E-08 9.9E-13 76.2 24.1 180 170-362 44-262 (282)
280 KOG4714 Nucleoporin [Nuclear s 99.2 1.8E-10 4E-15 87.5 9.9 167 163-359 83-254 (319)
281 PF04762 IKI3: IKI3 family; I 99.2 1.1E-08 2.4E-13 96.7 23.8 271 30-360 119-457 (928)
282 COG5354 Uncharacterized protei 99.2 1.5E-08 3.3E-13 84.6 21.4 289 26-360 67-396 (561)
283 KOG3914 WD repeat protein WDR4 99.2 1.1E-09 2.3E-14 88.6 14.0 164 172-373 65-231 (390)
284 KOG4190 Uncharacterized conser 99.2 1.6E-10 3.5E-15 97.3 8.7 175 78-296 727-908 (1034)
285 KOG2695 WD40 repeat protein [G 99.1 3.2E-10 7E-15 89.7 9.1 167 186-386 228-401 (425)
286 KOG2041 WD40 repeat protein [G 99.1 1.4E-09 3E-14 94.5 13.7 172 89-295 16-187 (1189)
287 KOG2315 Predicted translation 99.1 1.3E-07 2.9E-12 80.1 24.8 261 89-387 36-364 (566)
288 COG4946 Uncharacterized protei 99.1 7.2E-08 1.6E-12 80.1 22.7 119 166-296 356-479 (668)
289 PF08450 SGL: SMP-30/Gluconola 99.1 3.5E-07 7.7E-12 74.2 27.0 226 36-340 4-244 (246)
290 PRK04043 tolB translocation pr 99.1 1.8E-07 4E-12 81.2 26.3 194 32-295 188-401 (419)
291 PLN02919 haloacid dehalogenase 99.1 7.7E-08 1.7E-12 92.8 26.0 225 34-297 626-891 (1057)
292 KOG3914 WD repeat protein WDR4 99.1 2.8E-09 6.1E-14 86.2 13.2 162 90-301 65-230 (390)
293 KOG2695 WD40 repeat protein [G 99.1 1.6E-09 3.6E-14 85.8 9.9 124 168-296 251-378 (425)
294 PF15492 Nbas_N: Neuroblastoma 99.1 3.3E-07 7.1E-12 71.5 22.2 213 38-298 4-263 (282)
295 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.9E-06 4.1E-11 72.0 27.2 257 54-387 27-308 (352)
296 KOG1912 WD40 repeat protein [G 99.0 1.3E-07 2.9E-12 83.2 20.9 249 30-360 14-305 (1062)
297 PF08450 SGL: SMP-30/Gluconola 99.0 7.1E-07 1.5E-11 72.4 24.3 216 92-385 4-232 (246)
298 KOG2066 Vacuolar assembly/sort 99.0 4.1E-08 8.9E-13 86.7 17.5 187 30-295 38-234 (846)
299 KOG0882 Cyclophilin-related pe 99.0 9.3E-09 2E-13 84.5 12.7 271 27-359 5-305 (558)
300 KOG1920 IkappaB kinase complex 99.0 7.6E-07 1.6E-11 82.6 25.7 237 32-296 69-324 (1265)
301 PF07433 DUF1513: Protein of u 99.0 3E-06 6.4E-11 68.4 25.4 204 33-296 6-249 (305)
302 KOG2114 Vacuolar assembly/sort 99.0 4E-07 8.8E-12 81.2 22.0 204 33-296 27-245 (933)
303 KOG1912 WD40 repeat protein [G 99.0 1.3E-06 2.9E-11 77.2 24.6 208 28-295 52-305 (1062)
304 KOG1008 Uncharacterized conser 98.9 8.8E-10 1.9E-14 94.5 4.5 210 31-297 56-278 (783)
305 KOG0882 Cyclophilin-related pe 98.9 3.5E-08 7.5E-13 81.3 13.4 231 85-375 8-241 (558)
306 KOG1008 Uncharacterized conser 98.9 2.2E-09 4.8E-14 92.0 4.5 208 90-361 59-277 (783)
307 PF00400 WD40: WD domain, G-be 98.8 7.6E-09 1.6E-13 56.8 5.0 38 77-115 2-39 (39)
308 KOG1645 RING-finger-containing 98.8 3.6E-07 7.9E-12 74.4 15.9 161 77-284 184-351 (463)
309 TIGR03300 assembly_YfgL outer 98.8 2.8E-06 6E-11 73.9 23.0 272 44-377 65-350 (377)
310 PF00400 WD40: WD domain, G-be 98.8 9.6E-09 2.1E-13 56.4 5.1 38 254-292 2-39 (39)
311 KOG1275 PAB-dependent poly(A) 98.8 2.1E-07 4.5E-12 83.5 15.2 184 45-292 148-340 (1118)
312 KOG1275 PAB-dependent poly(A) 98.8 2.9E-07 6.3E-12 82.6 14.6 154 170-357 178-340 (1118)
313 KOG1645 RING-finger-containing 98.8 2.1E-06 4.4E-11 70.2 17.7 79 27-119 189-268 (463)
314 KOG1832 HIV-1 Vpr-binding prot 98.7 1.2E-08 2.5E-13 91.1 5.3 191 28-296 1098-1293(1516)
315 TIGR03300 assembly_YfgL outer 98.7 7.8E-06 1.7E-10 71.1 21.2 98 183-296 242-340 (377)
316 PF11768 DUF3312: Protein of u 98.7 2.2E-05 4.7E-10 67.9 22.0 150 172-333 208-369 (545)
317 KOG2114 Vacuolar assembly/sort 98.6 9.8E-06 2.1E-10 72.8 20.1 199 93-360 29-244 (933)
318 PF06977 SdiA-regulated: SdiA- 98.6 2.5E-05 5.4E-10 62.2 20.6 212 26-291 16-247 (248)
319 PF13360 PQQ_2: PQQ-like domai 98.6 1.8E-05 3.9E-10 64.0 20.5 212 53-359 2-230 (238)
320 KOG2066 Vacuolar assembly/sort 98.6 6.4E-06 1.4E-10 73.3 17.9 189 89-359 41-233 (846)
321 PF07433 DUF1513: Protein of u 98.6 4.8E-05 1E-09 61.5 21.3 213 91-374 8-256 (305)
322 KOG1832 HIV-1 Vpr-binding prot 98.5 1.8E-07 3.9E-12 83.8 6.7 175 159-377 1091-1267(1516)
323 PF11768 DUF3312: Protein of u 98.4 2.4E-06 5.3E-11 73.6 10.8 79 24-118 252-330 (545)
324 KOG1920 IkappaB kinase complex 98.4 0.00022 4.7E-09 67.1 23.3 204 89-360 70-323 (1265)
325 PF08596 Lgl_C: Lethal giant l 98.4 7.7E-05 1.7E-09 64.1 18.9 148 89-245 3-173 (395)
326 PF08596 Lgl_C: Lethal giant l 98.3 0.0003 6.6E-09 60.5 21.4 255 33-339 3-324 (395)
327 PF08553 VID27: VID27 cytoplas 98.3 4.8E-05 1E-09 70.1 16.5 135 148-294 503-647 (794)
328 KOG3621 WD40 repeat-containing 98.3 2E-05 4.3E-10 69.3 13.3 165 30-246 32-198 (726)
329 KOG3617 WD40 and TPR repeat-co 98.3 9.3E-05 2E-09 66.8 16.9 109 35-200 19-131 (1416)
330 KOG2395 Protein involved in va 98.2 0.00032 7E-09 60.1 18.6 125 160-295 367-501 (644)
331 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00031 6.7E-09 60.4 19.3 144 214-387 183-337 (353)
332 PRK11138 outer membrane biogen 98.2 0.00046 1E-08 60.4 20.6 97 184-296 258-355 (394)
333 COG0823 TolB Periplasmic compo 98.2 0.00045 9.9E-09 60.1 19.0 186 89-340 194-388 (425)
334 PRK02888 nitrous-oxide reducta 98.2 0.00029 6.3E-09 62.8 17.4 86 263-360 320-405 (635)
335 PF04053 Coatomer_WDAD: Coatom 98.1 0.00047 1E-08 60.2 18.3 140 89-295 34-174 (443)
336 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0035 7.6E-08 53.9 22.4 277 31-342 42-348 (353)
337 PF08553 VID27: VID27 cytoplas 98.0 0.00024 5.3E-09 65.6 15.2 138 188-358 500-646 (794)
338 COG0823 TolB Periplasmic compo 98.0 0.0015 3.2E-08 57.0 19.3 186 31-283 192-389 (425)
339 PRK02888 nitrous-oxide reducta 98.0 0.00085 1.8E-08 59.9 17.6 110 178-295 285-405 (635)
340 PF13360 PQQ_2: PQQ-like domai 98.0 0.0017 3.7E-08 52.5 18.2 185 43-296 35-232 (238)
341 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0015 3.2E-08 44.2 14.0 103 172-290 2-110 (111)
342 PF04053 Coatomer_WDAD: Coatom 97.9 0.012 2.6E-07 51.7 24.7 227 29-359 30-262 (443)
343 KOG3617 WD40 and TPR repeat-co 97.9 0.00028 6.1E-09 63.9 13.0 72 33-118 61-132 (1416)
344 PF03178 CPSF_A: CPSF A subuni 97.9 0.0057 1.2E-07 51.9 20.8 115 168-295 87-203 (321)
345 KOG3621 WD40 repeat-containing 97.9 0.00024 5.3E-09 62.8 11.7 123 213-360 32-155 (726)
346 PRK11138 outer membrane biogen 97.9 0.0039 8.3E-08 54.7 19.5 232 44-296 69-314 (394)
347 PF06977 SdiA-regulated: SdiA- 97.9 0.0044 9.5E-08 49.6 17.8 178 164-359 16-201 (248)
348 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0018 3.9E-08 43.8 12.9 68 217-295 2-72 (111)
349 PF05694 SBP56: 56kDa selenium 97.8 0.006 1.3E-07 52.0 18.7 148 191-341 221-393 (461)
350 KOG4640 Anaphase-promoting com 97.8 0.00012 2.7E-09 63.8 9.1 94 169-273 20-115 (665)
351 KOG4640 Anaphase-promoting com 97.8 0.00016 3.5E-09 63.1 9.2 76 214-298 20-96 (665)
352 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0043 9.4E-08 48.5 15.7 112 175-298 16-127 (354)
353 PF03178 CPSF_A: CPSF A subuni 97.8 0.012 2.5E-07 50.0 20.0 195 44-291 42-262 (321)
354 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.012 2.7E-07 46.1 21.1 68 44-124 63-130 (354)
355 PF04841 Vps16_N: Vps16, N-ter 97.7 0.025 5.5E-07 49.5 24.0 59 226-295 189-247 (410)
356 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.4E-09 39.5 5.1 38 77-115 3-40 (40)
357 PF06433 Me-amine-dh_H: Methyl 97.7 0.0087 1.9E-07 49.5 17.3 271 54-376 17-331 (342)
358 COG3204 Uncharacterized protei 97.7 0.017 3.6E-07 46.4 18.4 172 28-245 82-263 (316)
359 COG3386 Gluconolactonase [Carb 97.7 0.015 3.1E-07 48.5 19.0 181 172-385 68-262 (307)
360 smart00320 WD40 WD40 repeats. 97.7 0.00016 3.4E-09 38.8 5.2 33 27-60 8-40 (40)
361 PF02897 Peptidase_S9_N: Proly 97.7 0.036 7.8E-07 49.1 28.7 246 34-359 126-404 (414)
362 KOG2444 WD40 repeat protein [G 97.7 8.2E-05 1.8E-09 56.6 4.8 106 183-296 71-179 (238)
363 PF04841 Vps16_N: Vps16, N-ter 97.7 0.035 7.7E-07 48.7 21.7 86 177-276 186-272 (410)
364 KOG4441 Proteins containing BT 97.6 0.027 5.8E-07 51.6 20.8 151 183-361 382-548 (571)
365 COG3391 Uncharacterized conser 97.6 0.043 9.4E-07 47.7 24.2 198 35-296 77-285 (381)
366 PF00780 CNH: CNH domain; Int 97.6 0.033 7.1E-07 46.1 25.3 156 43-246 6-166 (275)
367 COG3391 Uncharacterized conser 97.5 0.051 1.1E-06 47.3 26.8 194 91-359 77-283 (381)
368 cd00216 PQQ_DH Dehydrogenases 97.5 0.044 9.5E-07 49.5 20.7 75 45-126 62-137 (488)
369 COG3386 Gluconolactonase [Carb 97.4 0.061 1.3E-06 44.8 24.3 229 38-341 31-275 (307)
370 KOG3630 Nuclear pore complex, 97.3 0.012 2.6E-07 55.7 15.1 159 79-279 92-259 (1405)
371 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0011 2.3E-08 37.4 5.1 32 30-62 10-41 (47)
372 KOG2079 Vacuolar assembly/sort 97.3 0.0016 3.5E-08 60.8 9.1 65 226-296 98-162 (1206)
373 PF14583 Pectate_lyase22: Olig 97.3 0.092 2E-06 44.6 22.6 69 39-120 43-113 (386)
374 KOG2395 Protein involved in va 97.2 0.015 3.2E-07 50.5 13.5 143 183-359 347-500 (644)
375 KOG2444 WD40 repeat protein [G 97.2 0.00083 1.8E-08 51.3 5.5 144 184-360 32-178 (238)
376 PRK13616 lipoprotein LpqB; Pro 97.2 0.06 1.3E-06 49.4 18.1 141 170-336 350-511 (591)
377 PF02897 Peptidase_S9_N: Proly 97.1 0.17 3.6E-06 44.9 21.0 208 90-359 126-357 (414)
378 PF05694 SBP56: 56kDa selenium 97.1 0.15 3.2E-06 43.9 19.4 173 173-362 133-345 (461)
379 PHA02713 hypothetical protein; 97.1 0.024 5.2E-07 52.0 14.5 93 193-295 433-534 (557)
380 PHA02713 hypothetical protein; 97.1 0.13 2.8E-06 47.3 19.1 51 183-236 353-408 (557)
381 PF12894 Apc4_WD40: Anaphase-p 96.9 0.004 8.6E-08 35.0 5.1 32 213-245 10-41 (47)
382 PF15390 DUF4613: Domain of un 96.8 0.063 1.4E-06 47.5 13.8 122 167-295 54-187 (671)
383 KOG4441 Proteins containing BT 96.8 0.14 3E-06 47.1 16.7 104 182-295 428-547 (571)
384 PF10647 Gmad1: Lipoprotein Lp 96.7 0.25 5.5E-06 40.2 18.9 118 171-290 67-192 (253)
385 KOG2079 Vacuolar assembly/sort 96.6 0.0093 2E-07 56.1 8.0 101 183-294 100-203 (1206)
386 COG3490 Uncharacterized protei 96.6 0.28 6E-06 39.5 22.3 209 31-296 67-312 (366)
387 PF10313 DUF2415: Uncharacteri 96.5 0.011 2.5E-07 32.1 4.9 33 32-64 1-35 (43)
388 PRK13616 lipoprotein LpqB; Pro 96.5 0.65 1.4E-05 42.9 19.9 111 172-295 399-526 (591)
389 PF10168 Nup88: Nuclear pore c 96.4 0.89 1.9E-05 43.0 20.7 88 31-120 84-182 (717)
390 PHA03098 kelch-like protein; P 96.4 0.49 1.1E-05 43.6 17.7 103 183-295 391-512 (534)
391 COG3204 Uncharacterized protei 96.4 0.42 9.2E-06 38.7 16.2 177 166-359 82-263 (316)
392 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.62 1.3E-05 40.6 18.3 77 213-296 306-400 (415)
393 KOG4499 Ca2+-binding protein R 96.3 0.33 7.1E-06 37.9 13.4 140 215-385 109-261 (310)
394 PF12234 Rav1p_C: RAVE protein 96.3 0.35 7.5E-06 44.4 15.8 122 216-359 31-156 (631)
395 PF10647 Gmad1: Lipoprotein Lp 96.3 0.47 1E-05 38.6 17.1 153 171-340 25-184 (253)
396 PF14870 PSII_BNR: Photosynthe 96.3 0.54 1.2E-05 39.1 16.8 157 29-242 142-301 (302)
397 PF15390 DUF4613: Domain of un 96.2 0.11 2.4E-06 46.1 11.7 152 3-201 26-187 (671)
398 KOG3630 Nuclear pore complex, 96.1 0.16 3.6E-06 48.6 12.9 151 171-340 102-262 (1405)
399 PF08728 CRT10: CRT10; InterP 96.1 0.61 1.3E-05 43.3 16.2 185 31-245 40-246 (717)
400 KOG2377 Uncharacterized conser 96.1 0.83 1.8E-05 39.5 19.8 147 35-234 26-172 (657)
401 COG3490 Uncharacterized protei 96.1 0.11 2.4E-06 41.7 10.0 103 172-280 70-178 (366)
402 PF06433 Me-amine-dh_H: Methyl 96.0 0.77 1.7E-05 38.5 21.2 105 185-297 198-323 (342)
403 COG5276 Uncharacterized conser 95.8 0.82 1.8E-05 37.1 19.3 143 170-337 87-229 (370)
404 PF12657 TFIIIC_delta: Transcr 95.8 0.25 5.4E-06 37.5 10.8 31 170-200 86-121 (173)
405 COG4590 ABC-type uncharacteriz 95.7 0.19 4E-06 43.2 10.6 169 163-361 214-388 (733)
406 KOG1916 Nuclear protein, conta 95.7 0.02 4.3E-07 53.0 5.3 83 28-118 129-214 (1283)
407 PF10313 DUF2415: Uncharacteri 95.7 0.055 1.2E-06 29.5 5.0 32 170-201 1-34 (43)
408 KOG2247 WD40 repeat-containing 95.7 0.0013 2.7E-08 56.2 -1.9 142 92-286 39-180 (615)
409 PHA02790 Kelch-like protein; P 95.6 0.85 1.8E-05 41.3 15.3 100 183-295 364-471 (480)
410 TIGR02604 Piru_Ver_Nterm putat 95.5 1.5 3.3E-05 38.0 16.3 109 170-282 14-142 (367)
411 PF12234 Rav1p_C: RAVE protein 95.4 0.69 1.5E-05 42.5 13.7 120 170-295 30-157 (631)
412 PHA03098 kelch-like protein; P 95.4 2.3 4.9E-05 39.3 18.9 61 183-246 344-415 (534)
413 PF00780 CNH: CNH domain; Int 95.3 1.4 3E-05 36.5 19.6 117 171-296 37-167 (275)
414 PF08728 CRT10: CRT10; InterP 95.3 2.6 5.7E-05 39.4 18.0 118 172-294 103-246 (717)
415 PF14870 PSII_BNR: Photosynthe 95.2 1.6 3.4E-05 36.5 18.3 160 167-356 142-301 (302)
416 PF10168 Nup88: Nuclear pore c 95.0 2.2 4.7E-05 40.5 16.0 98 86-204 83-183 (717)
417 COG4590 ABC-type uncharacteriz 94.9 0.067 1.5E-06 45.7 5.5 169 82-297 216-389 (733)
418 KOG1916 Nuclear protein, conta 94.8 0.06 1.3E-06 50.1 5.5 126 163-298 126-269 (1283)
419 KOG2377 Uncharacterized conser 94.8 1 2.2E-05 39.0 12.1 107 168-283 65-173 (657)
420 COG5167 VID27 Protein involved 94.7 0.93 2E-05 39.8 11.9 131 153-295 494-633 (776)
421 KOG1897 Damage-specific DNA bi 94.5 4.7 0.0001 38.8 29.4 79 30-118 529-614 (1096)
422 PF05096 Glu_cyclase_2: Glutam 94.5 2.1 4.5E-05 34.7 20.9 196 22-283 33-250 (264)
423 PRK10115 protease 2; Provision 94.5 4.6 9.9E-05 38.5 25.7 115 89-246 128-256 (686)
424 cd00216 PQQ_DH Dehydrogenases 94.5 3.7 8E-05 37.3 18.2 30 226-261 405-434 (488)
425 PF14655 RAB3GAP2_N: Rab3 GTPa 94.4 1.2 2.7E-05 38.8 12.3 84 24-120 300-401 (415)
426 COG5167 VID27 Protein involved 94.4 2.9 6.2E-05 37.0 14.0 140 184-359 482-632 (776)
427 TIGR02604 Piru_Ver_Nterm putat 94.3 3.3 7.1E-05 36.0 17.0 62 170-236 124-204 (367)
428 PHA02790 Kelch-like protein; P 93.6 5.5 0.00012 36.1 17.2 63 180-246 318-385 (480)
429 PRK10115 protease 2; Provision 93.5 7.3 0.00016 37.2 31.4 71 33-119 128-209 (686)
430 PF14761 HPS3_N: Hermansky-Pud 93.2 3.2 7E-05 32.3 11.9 106 184-296 30-165 (215)
431 PF07676 PD40: WD40-like Beta 93.0 0.56 1.2E-05 25.0 5.2 30 262-291 7-38 (39)
432 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.7 8 0.00017 35.6 25.8 21 183-203 316-336 (527)
433 PF12768 Rax2: Cortical protei 92.4 5.5 0.00012 32.9 13.5 75 168-246 35-124 (281)
434 PF07569 Hira: TUP1-like enhan 92.3 0.62 1.3E-05 36.9 6.7 80 33-119 14-97 (219)
435 KOG1900 Nuclear pore complex, 92.3 3.5 7.6E-05 40.9 12.4 171 172-360 81-273 (1311)
436 PF14727 PHTB1_N: PTHB1 N-term 92.2 7.7 0.00017 34.2 18.3 157 179-360 34-205 (418)
437 KOG2247 WD40 repeat-containing 92.0 0.029 6.4E-07 48.3 -1.0 134 215-386 35-168 (615)
438 PF07569 Hira: TUP1-like enhan 91.9 1.2 2.6E-05 35.3 7.8 82 94-203 17-98 (219)
439 PLN02193 nitrile-specifier pro 91.9 8.9 0.00019 34.7 14.3 62 183-246 280-352 (470)
440 KOG4460 Nuclear pore complex, 91.7 7.6 0.00017 34.6 12.7 85 216-302 105-206 (741)
441 PF14761 HPS3_N: Hermansky-Pud 91.6 5.4 0.00012 31.1 13.5 116 228-360 29-164 (215)
442 KOG3616 Selective LIM binding 91.6 12 0.00026 35.1 14.5 31 89-119 16-46 (1636)
443 KOG1983 Tomosyn and related SN 91.4 5.9 0.00013 39.4 13.2 35 29-64 33-67 (993)
444 KOG1900 Nuclear pore complex, 91.2 18 0.00038 36.4 16.2 167 29-246 76-273 (1311)
445 PRK13684 Ycf48-like protein; P 91.2 8.9 0.00019 32.9 17.6 151 31-243 172-329 (334)
446 KOG4499 Ca2+-binding protein R 91.1 6.4 0.00014 31.1 18.8 105 172-283 160-274 (310)
447 PF12657 TFIIIC_delta: Transcr 90.9 2.9 6.3E-05 31.7 8.8 32 264-295 86-122 (173)
448 PF14583 Pectate_lyase22: Olig 90.8 10 0.00022 32.8 13.6 153 176-359 42-222 (386)
449 KOG4460 Nuclear pore complex, 90.8 5.8 0.00013 35.4 11.1 77 170-247 104-200 (741)
450 PLN02153 epithiospecifier prot 90.3 11 0.00024 32.4 17.9 22 43-64 32-60 (341)
451 PF05096 Glu_cyclase_2: Glutam 90.2 8.8 0.00019 31.2 25.0 201 80-341 37-250 (264)
452 TIGR02276 beta_rpt_yvtn 40-res 89.8 2 4.4E-05 23.1 5.9 24 273-296 1-24 (42)
453 PF07995 GSDH: Glucose / Sorbo 89.7 6.1 0.00013 33.8 10.7 24 91-115 5-28 (331)
454 KOG1897 Damage-specific DNA bi 89.7 21 0.00046 34.8 24.6 112 217-359 777-898 (1096)
455 PF12768 Rax2: Cortical protei 89.3 11 0.00025 31.1 12.2 53 237-296 16-74 (281)
456 KOG1898 Splicing factor 3b, su 89.0 25 0.00053 34.6 25.3 74 43-128 548-629 (1205)
457 PF11715 Nup160: Nucleoporin N 88.7 4.6 0.0001 37.4 10.0 36 89-124 216-255 (547)
458 PRK14131 N-acetylneuraminic ac 88.2 17 0.00037 31.8 18.9 42 192-235 189-230 (376)
459 PF14781 BBS2_N: Ciliary BBSom 88.0 7.8 0.00017 27.7 13.0 75 38-120 5-84 (136)
460 PF01731 Arylesterase: Arylest 87.9 3.6 7.8E-05 26.8 6.2 31 265-295 55-85 (86)
461 KOG2280 Vacuolar assembly/sort 87.7 25 0.00054 33.2 17.3 33 263-296 216-248 (829)
462 PF11635 Med16: Mediator compl 87.5 29 0.00063 33.7 21.6 73 215-289 260-345 (753)
463 PF07676 PD40: WD40-like Beta 87.5 2.9 6.3E-05 22.2 5.2 30 168-197 7-38 (39)
464 TIGR03118 PEPCTERM_chp_1 conse 86.5 18 0.00038 30.1 18.1 122 171-295 24-171 (336)
465 TIGR02276 beta_rpt_yvtn 40-res 86.4 3.6 7.8E-05 22.1 6.0 25 179-203 1-25 (42)
466 PF07995 GSDH: Glucose / Sorbo 86.1 21 0.00045 30.6 21.1 70 255-337 245-321 (331)
467 PLN00033 photosystem II stabil 85.8 24 0.00052 31.1 17.5 68 170-242 328-396 (398)
468 PF14781 BBS2_N: Ciliary BBSom 85.5 11 0.00024 26.9 12.3 111 175-295 4-126 (136)
469 PLN00033 photosystem II stabil 85.3 26 0.00055 30.9 16.8 149 172-356 241-396 (398)
470 PF10214 Rrn6: RNA polymerase 85.3 39 0.00084 33.0 23.6 218 31-293 79-328 (765)
471 PLN02193 nitrile-specifier pro 84.6 31 0.00067 31.3 15.3 62 183-246 330-411 (470)
472 PF13449 Phytase-like: Esteras 84.1 26 0.00056 30.0 23.5 170 171-343 86-309 (326)
473 PF14727 PHTB1_N: PTHB1 N-term 83.7 31 0.00067 30.6 27.1 161 41-246 34-205 (418)
474 PLN02153 epithiospecifier prot 82.9 30 0.00064 29.8 14.4 53 192-246 217-285 (341)
475 PF08801 Nucleoporin_N: Nup133 82.7 28 0.0006 31.1 11.5 31 215-246 190-220 (422)
476 COG5290 IkappaB kinase complex 82.5 47 0.001 31.8 13.6 96 173-277 250-350 (1243)
477 PF11715 Nup160: Nucleoporin N 82.0 7.2 0.00016 36.2 7.9 71 183-259 159-256 (547)
478 KOG1896 mRNA cleavage and poly 81.8 28 0.00062 34.8 11.4 123 22-200 1088-1213(1366)
479 smart00036 CNH Domain found in 80.5 34 0.00074 28.9 12.9 117 226-356 12-128 (302)
480 KOG2280 Vacuolar assembly/sort 80.4 54 0.0012 31.1 17.0 53 170-224 217-269 (829)
481 TIGR03606 non_repeat_PQQ dehyd 80.3 44 0.00095 30.0 15.3 59 165-224 25-88 (454)
482 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.1 50 0.0011 30.6 21.8 73 219-298 238-337 (527)
483 KOG3616 Selective LIM binding 79.5 3.9 8.4E-05 38.1 5.0 70 214-294 14-83 (1636)
484 PF07250 Glyoxal_oxid_N: Glyox 79.0 33 0.00071 27.8 10.8 94 194-292 48-146 (243)
485 PF01731 Arylesterase: Arylest 78.1 16 0.00035 23.8 6.4 31 322-359 54-84 (86)
486 COG5276 Uncharacterized conser 77.9 39 0.00084 28.0 25.7 158 30-246 85-242 (370)
487 PF12341 DUF3639: Protein of u 77.4 6.7 0.00015 19.0 3.6 26 32-60 2-27 (27)
488 COG3823 Glutamine cyclotransfe 77.3 33 0.00071 26.9 14.4 41 23-65 35-79 (262)
489 TIGR03606 non_repeat_PQQ dehyd 76.4 58 0.0013 29.3 14.4 58 213-275 28-90 (454)
490 KOG0918 Selenium-binding prote 76.3 51 0.0011 28.6 16.9 155 185-341 222-408 (476)
491 KOG2063 Vacuolar assembly/sort 76.2 79 0.0017 31.1 12.5 74 43-120 25-99 (877)
492 TIGR03548 mutarot_permut cycli 76.0 49 0.0011 28.2 12.7 13 192-204 271-283 (323)
493 PF02333 Phytase: Phytase; In 75.3 56 0.0012 28.5 21.6 196 40-294 65-290 (381)
494 TIGR03118 PEPCTERM_chp_1 conse 75.2 48 0.001 27.8 23.7 214 33-296 24-281 (336)
495 TIGR03548 mutarot_permut cycli 75.2 51 0.0011 28.1 18.3 62 183-246 125-195 (323)
496 PF03088 Str_synth: Strictosid 75.1 21 0.00045 23.5 7.0 57 173-233 1-74 (89)
497 PF13449 Phytase-like: Esteras 74.8 53 0.0012 28.1 23.4 84 30-117 18-120 (326)
498 COG5290 IkappaB kinase complex 73.7 89 0.0019 30.1 16.1 75 215-296 247-326 (1243)
499 PF01436 NHL: NHL repeat; Int 73.5 8.9 0.00019 18.6 4.0 25 266-291 4-28 (28)
500 PF07250 Glyoxal_oxid_N: Glyox 71.4 53 0.0012 26.6 13.4 72 171-246 119-198 (243)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-53 Score=332.17 Aligned_cols=311 Identities=21% Similarity=0.302 Sum_probs=268.4
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.||.++|.|++|+| ++..||||+.|.++++||+.+. .+..+.++|.. .|.|++|+|||+.||
T Consensus 108 ssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~-WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKN-WVLCVAWSPDGKKIA 173 (480)
T ss_pred ccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCC------------CcceeecCCcc-EEEEEEECCCcchhh
Confidence 344568999999999999 9999999999999999999999 89999999998 899999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccC--------CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKS--------AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
+|+.||+|++||.+++......-...... ...............++.+.+|+......+..+.+|+.+|+|+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred ccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 99999999999998876544322221110 0111112255566778999999999999999999999999999
Q ss_pred EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec-----------C--------------------
Q 016547 176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-----------P-------------------- 224 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~-----------~-------------------- 224 (387)
.|-.+| ++++|+.|++|++|+...+. +.+.+.+|...|+.++.+ |
T Consensus 254 rwGG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 254 RWGGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred EEcCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 998776 89999999999999999887 788899999999999876 2
Q ss_pred ----CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee
Q 016547 225 ----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 300 (387)
Q Consensus 225 ----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 300 (387)
..+..|++|++|.++.+|+-... .+++....+|..-|+.+.||||+++ +|+++.|..|++||.+++
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkLW~g~tG---- 399 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKLWDGRTG---- 399 (480)
T ss_pred HhhccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCccE-EEEeecccceeeeeCCCc----
Confidence 02335999999999999998763 5688899999999999999999996 689999999999999996
Q ss_pred ccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceE
Q 016547 301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 380 (387)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v 380 (387)
+.+..+.+|-..|+.++|+.|.+.|+ +|+.|.++++|+++ +.++...+.+|.+.|
T Consensus 400 -----------k~lasfRGHv~~VYqvawsaDsRLlV--------S~SkDsTLKvw~V~------tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 400 -----------KFLASFRGHVAAVYQVAWSADSRLLV--------SGSKDSTLKVWDVR------TKKLKQDLPGHADEV 454 (480)
T ss_pred -----------chhhhhhhccceeEEEEeccCccEEE--------EcCCCceEEEEEee------eeeecccCCCCCceE
Confidence 45788999999999999999877655 67777999999999 899999999999999
Q ss_pred EEeeecC
Q 016547 381 ISCTSKP 387 (387)
Q Consensus 381 ~~~~f~P 387 (387)
.+++|+|
T Consensus 455 f~vDwsp 461 (480)
T KOG0271|consen 455 FAVDWSP 461 (480)
T ss_pred EEEEecC
Confidence 9999998
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-49 Score=314.77 Aligned_cols=267 Identities=23% Similarity=0.373 Sum_probs=244.1
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEEEe
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSG 105 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~s~ 105 (387)
++-..+|..+.|+. +++.||||+.+|.+++|+..+. ..+..+.+|.+ .|.++.|+|. +..|+||
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~-~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTS-RVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCc------------ceeEEEecccc-ceeeEEEccCCCccceeee
Confidence 46778999999999 9999999999999999999998 78899999998 6889999997 5689999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.||++++|++.+ ..++..+.+|...|..++|+|+| ++|
T Consensus 238 s~Dgtvklw~~~~----------------------------------------e~~l~~l~gH~~RVs~VafHPsG-~~L 276 (459)
T KOG0272|consen 238 SADGTVKLWKLSQ----------------------------------------ETPLQDLEGHLARVSRVAFHPSG-KFL 276 (459)
T ss_pred ccCCceeeeccCC----------------------------------------CcchhhhhcchhhheeeeecCCC-cee
Confidence 9999999999974 24567889999999999999999 899
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++++.|.+-++||++++. ......+|...|.+++|.| +|.++++|+.|..-+|||+|+ +.++..+.+|..+
T Consensus 277 ~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k~ 347 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIKE 347 (459)
T ss_pred eecccccchhhcccccch--hhHhhcccccccceeEecC-CCceeeccCccchhheeeccc------CcEEEEecccccc
Confidence 999999999999999988 4666779999999999999 999999999999999999999 9999999999999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|.+++|+|+|.. +|+|+.|++++|||++.. ..+....+|...|+.+.|+|...++++
T Consensus 348 I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r---------------~~ly~ipAH~nlVS~Vk~~p~~g~fL~------- 404 (459)
T KOG0272|consen 348 ILSVAFSPNGYH-LATGSSDNTCKVWDLRMR---------------SELYTIPAHSNLVSQVKYSPQEGYFLV------- 404 (459)
T ss_pred eeeEeECCCceE-EeecCCCCcEEEeeeccc---------------ccceecccccchhhheEecccCCeEEE-------
Confidence 999999999975 789999999999999985 346778999999999999997666666
Q ss_pred CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|++.|++++||.-. +.++++.+.||.+.|.+|+.+|
T Consensus 405 TasyD~t~kiWs~~------~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 405 TASYDNTVKIWSTR------TWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred EcccCcceeeecCC------CcccchhhcCCccceEEEEecc
Confidence 55566999999999 8999999999999999999876
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-48 Score=306.11 Aligned_cols=248 Identities=23% Similarity=0.361 Sum_probs=228.9
Q ss_pred eeeeecCCCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 24 KHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
..++.||.+.|.++.|+|. ++.-+|||+.||+|++|++++. .++..+.+|.. .|..++|+|+|++|
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------~~l~~l~gH~~-RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------TPLQDLEGHLA-RVSRVAFHPSGKFL 276 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------cchhhhhcchh-hheeeeecCCCcee
Confidence 4567799999999999997 4779999999999999999998 78889999997 78999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
+|++.|.+-++||+.++.. +....+|+..|.+++|.+||
T Consensus 277 ~TasfD~tWRlWD~~tk~E----------------------------------------lL~QEGHs~~v~~iaf~~DG- 315 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKSE----------------------------------------LLLQEGHSKGVFSIAFQPDG- 315 (459)
T ss_pred eecccccchhhcccccchh----------------------------------------hHhhcccccccceeEecCCC-
Confidence 9999999999999987543 25567999999999999999
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.++++|+.|..-+|||++++. ++..+.+|..+|.+|+|+| +|..||+|+.|++++|||++. ...+..+.+|
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipAH 386 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM------RSELYTIPAH 386 (459)
T ss_pred ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecc------cccceecccc
Confidence 899999999999999999999 6888899999999999999 999999999999999999998 7889999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
..-|+.+.|+|...++|++++.|++++||..++. .++..+.||++.|.+++.++++++++
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~----- 446 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIA----- 446 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEE-----
Confidence 9999999999966667889999999999999886 56788899999999999999999888
Q ss_pred CCCCCCCCceEEEEe
Q 016547 343 DCDSTGGGGTLQIWR 357 (387)
Q Consensus 343 d~~tg~~dg~i~iw~ 357 (387)
|++.|.++++|.
T Consensus 447 ---t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 ---TSSFDRTIKLWR 458 (459)
T ss_pred ---EeccCceeeecc
Confidence 888889999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-45 Score=274.80 Aligned_cols=281 Identities=17% Similarity=0.311 Sum_probs=245.0
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
+.....+.||.+.|.++.|++ +.+.+++++.||.+.|||.-+. ...+.++-... .|..++|+|.|+
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~Tt------------nK~haipl~s~-WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTT------------NKVHAIPLPSS-WVMTCAYSPSGN 110 (343)
T ss_pred eeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccc------------cceeEEecCce-eEEEEEECCCCC
Confidence 334567779999999999999 9999999999999999999888 55666666665 799999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
++|.|+-|+...||++.+..... .....+.+.+|++-+.|+.|.+|
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g----------------------------------~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEG----------------------------------NVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred eEEecCcCceeEEEecccccccc----------------------------------cceeeeeecCccceeEEEEEcCC
Confidence 99999999999999998532111 11223668899999999999986
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
+ .+++++.|.+..+||+++++ ....+.+|.+.|.+++++|.+++.+++|+.|+..++||+|. +.++++|.
T Consensus 157 ~--~ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~------~~c~qtF~ 226 (343)
T KOG0286|consen 157 N--HILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS------GQCVQTFE 226 (343)
T ss_pred C--ceEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC------cceeEeec
Confidence 5 79999999999999999998 68889999999999999998899999999999999999999 99999999
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
+|+..|+++.|.|+|.- |++|++|++.++||++...+. .++....-..+|++++|+..|+.|+
T Consensus 227 ghesDINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~-------------a~ys~~~~~~gitSv~FS~SGRlLf--- 289 (343)
T KOG0286|consen 227 GHESDINSVRFFPSGDA-FATGSDDATCRLYDLRADQEL-------------AVYSHDSIICGITSVAFSKSGRLLF--- 289 (343)
T ss_pred ccccccceEEEccCCCe-eeecCCCceeEEEeecCCcEE-------------eeeccCcccCCceeEEEcccccEEE---
Confidence 99999999999999985 789999999999999984332 2333334456899999999999888
Q ss_pred cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|..|.++.+||.- .++.+..+.+|++.|.++..+|
T Consensus 290 -----agy~d~~c~vWDtl------k~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 290 -----AGYDDFTCNVWDTL------KGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred -----eeecCCceeEeecc------ccceEEEeeccCCeeEEEEECC
Confidence 67778999999998 7899999999999999999887
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-46 Score=292.70 Aligned_cols=288 Identities=26% Similarity=0.355 Sum_probs=244.0
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CC
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TE 99 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~ 99 (387)
....+|..-|.|++|+| ++..||+|+.||+|++||.++++ .....+.+|.. .|++++|.| ..
T Consensus 151 ~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~-----------~~g~~l~gH~K-~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQ-----------QIGRALRGHKK-WITALAWEPLHLVPPC 217 (480)
T ss_pred eeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCC-----------cccccccCccc-ceeEEeecccccCCCc
Confidence 45668999999999999 99999999999999999999885 45567999998 799999976 56
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCC-CCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSA-GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
++|++++.||+|+|||+..+.+............ -.-+..-..-.+..+..+.+|+...+.....+++|...|+.++.+
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 7999999999999999988765544333222110 001111122345567889999999999999999999999999987
Q ss_pred c-----------CC------------------------CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec
Q 016547 179 P-----------SS------------------------AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223 (387)
Q Consensus 179 ~-----------~~------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (387)
. .+ +..+++|+.|.++.+|+....++ .+....+|..-|+.+.|+
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-pi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-PITRMTGHQALVNHVSFS 376 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-chhhhhchhhheeeEEEC
Confidence 2 22 23599999999999999877664 456677999999999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 303 (387)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 303 (387)
| +++++|+++-|..|++||.++ ++.+.+|++|-..|+.++|+.|.+ ||++|+.|.++++||+++.
T Consensus 377 P-d~r~IASaSFDkSVkLW~g~t------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk------- 441 (480)
T KOG0271|consen 377 P-DGRYIASASFDKSVKLWDGRT------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK------- 441 (480)
T ss_pred C-CccEEEEeecccceeeeeCCC------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee-------
Confidence 9 999999999999999999999 999999999999999999999998 6789999999999999985
Q ss_pred CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~ 357 (387)
++...+.+|.+.|.++.|+|||..++ +||.|..+++|.
T Consensus 442 --------Kl~~DLpGh~DEVf~vDwspDG~rV~--------sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 --------KLKQDLPGHADEVFAVDWSPDGQRVA--------SGGKDKVLRLWR 479 (480)
T ss_pred --------eecccCCCCCceEEEEEecCCCceee--------cCCCceEEEeec
Confidence 45677899999999999999999988 999999999995
No 6
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-43 Score=283.62 Aligned_cols=300 Identities=42% Similarity=0.784 Sum_probs=256.8
Q ss_pred cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
..++..+.+.|.+.|+.+++.|++..++|+++..+.|.|||..+........+ ...+...+.+|+.. =++++|++..
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~e-g~glsWn~~~ 189 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKE-GYGLSWNRQQ 189 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCCCceEEEeeccc-cccccccccc
Confidence 36777788899999999999999999999999999999999987755443322 44677899999983 4799999864
Q ss_pred -CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 100 -PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 100 -~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
-+|++++.|++|++||+...... .....+...+.+|...|..++|+
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKE---------------------------------DKVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccC---------------------------------CccccceEEeecCCcceehhhcc
Confidence 47999999999999999854221 12334567889999999999999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
+....+|++++.|+.+.|||+|+...+......+|.+.|+|++|+|.++..||+|+.|++|.+||+|++ .+++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-----~~~lh~ 311 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL-----NKPLHT 311 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc-----ccCcee
Confidence 998889999999999999999964444667788999999999999999999999999999999999997 679999
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+.+|+..|.++.|+|....+||+++.|+.+.|||+...++.+. .......|+.+++...||...|..+.|+|+.+++++
T Consensus 312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence 9999999999999999999999999999999999998776654 333445778899999999999999999999999999
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccch
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDE 368 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~ 368 (387)
++++| +.+.||++.+.+++....
T Consensus 391 SvaeD-------N~LqIW~~s~~i~~~e~~ 413 (422)
T KOG0264|consen 391 SVAED-------NILQIWQMAENIYNPEDP 413 (422)
T ss_pred EecCC-------ceEEEeeccccccCcccc
Confidence 77766 999999999776655443
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-44 Score=303.79 Aligned_cols=270 Identities=25% Similarity=0.465 Sum_probs=234.1
Q ss_pred ccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCc--------c-----------cccCCCCCC
Q 016547 17 ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------H-----------AVLGATNSR 77 (387)
Q Consensus 17 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--------~-----------~~~~~~~~~ 77 (387)
...|.+...+...-...++|..|++ +..+||.|-.|..|++|.+...+.. . .........
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 3455565566655677899999999 8889999999999999999853211 0 112222334
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
....+.||++ +|..+.|+|+.++|++||.|+++|+|.+.+..
T Consensus 443 ~~~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t~s------------------------------------- 484 (707)
T KOG0263|consen 443 TSRTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS------------------------------------- 484 (707)
T ss_pred eeEEeecCCC-ceeeeeecccccceeeccCCcceeeeecccce-------------------------------------
Confidence 5567999998 89999999999999999999999999998643
Q ss_pred CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
.+..+++|..+|+++.|+|.| .+|+|++.|++.++|...... ..+.+.+|.+.|.|+.|+| +.+++++||.|.
T Consensus 485 ---~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~ 557 (707)
T KOG0263|consen 485 ---CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDR 557 (707)
T ss_pred ---eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhcccccccceEEECC-cccccccCCCCc
Confidence 346778999999999999999 999999999999999988866 6788999999999999999 999999999999
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
+||+||..+ +..++.|.+|.++|.+++|||+|++ ||+|+.||.|.+||+..+ .++..+
T Consensus 558 tVRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~---------------~~v~~l 615 (707)
T KOG0263|consen 558 TVRLWDVST------GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANG---------------SLVKQL 615 (707)
T ss_pred eEEEEEcCC------CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCC---------------cchhhh
Confidence 999999999 9999999999999999999999997 689999999999999986 456778
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
.+|.+.|.++.|+.+|..|+ +||.|++|++||+....
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLa--------sgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLA--------SGGADNSVRLWDLTKVI 652 (707)
T ss_pred hcccCceeEEEEecCCCEEE--------ecCCCCeEEEEEchhhc
Confidence 89999999999999999888 88999999999988554
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-44 Score=278.27 Aligned_cols=271 Identities=23% Similarity=0.408 Sum_probs=247.5
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..++.+|..+|+.+-|+| +..++++++.|++|++||..++ +....++||+++ |..+.|+..|++|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~s-v~di~~~a~Gk~l~ 166 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETG------------ELERSLRGHTDS-VFDISFDASGKYLA 166 (406)
T ss_pred hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccch------------hhhhhhhccccc-eeEEEEecCccEEE
Confidence 456678999999999999 8889999999999999999999 678899999994 99999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.|-.+.+||.++. .+++..+.+|...|.++.|-|.| .
T Consensus 167 tcSsDl~~~LWd~~~~---------------------------------------~~c~ks~~gh~h~vS~V~f~P~g-d 206 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF---------------------------------------FRCIKSLIGHEHGVSSVFFLPLG-D 206 (406)
T ss_pred ecCCccchhheeHHHH---------------------------------------HHHHHHhcCcccceeeEEEEecC-C
Confidence 9999999999999752 33446677899999999999999 8
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
++++++.|.+|+.|++.++. ++..+.+|...|..++.+. +|.++++++.|.++++|-+.+ .++...++.|+
T Consensus 207 ~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hE 277 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHE 277 (406)
T ss_pred eeeecccccceeEEecccce--eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccc
Confidence 99999999999999999998 7899999999999999999 999999999999999999998 88889999999
Q ss_pred ceEEEEEEcCCC--------------CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 264 AAVLCVQWSPDK--------------SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 264 ~~i~~~~~~~~~--------------~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
.+|.+++|.|.. ..++++++.|++|++||+..+ .+++++.+|..+|.+++|
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------------~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------------MCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------------eEEEEEecccceeeeeEE
Confidence 999999997641 135789999999999999986 678999999999999999
Q ss_pred ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
+|.|+|++ ++.+|+++++||++ ..+++.++..|...|++++|+
T Consensus 343 ~p~Gkyi~--------ScaDDktlrvwdl~------~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 343 SPGGKYIL--------SCADDKTLRVWDLK------NLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred cCCCeEEE--------EEecCCcEEEEEec------cceeeeccCCCcceeEEEecC
Confidence 99999887 66666999999999 799999999999999999996
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-42 Score=259.05 Aligned_cols=262 Identities=22% Similarity=0.392 Sum_probs=222.2
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+.+|++.|+.++..+.+.+++.+++.|.++.+|++.... .....+.+.+.||.. .|..+..++||++.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-------~~~G~~~r~~~GHsH-~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-------IKYGVPVRRLTGHSH-FVSDVVLSSDGNFA 78 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc-------cccCceeeeeeccce-EecceEEccCCceE
Confidence 3456678999999999999888999999999999999998762 223367899999987 79999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|+++++||+.++ ++.+.+.+|...|.+++|++++
T Consensus 79 lS~swD~~lrlWDl~~g----------------------------------------~~t~~f~GH~~dVlsva~s~dn- 117 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATG----------------------------------------ESTRRFVGHTKDVLSVAFSTDN- 117 (315)
T ss_pred EeccccceEEEEEecCC----------------------------------------cEEEEEEecCCceEEEEecCCC-
Confidence 99999999999999864 3447889999999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCC-CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
..+++|+.|.+|++|++.... ..... .+...|.|+.|+|.. ..++++++.|++|++||+++ .+....+
T Consensus 118 ~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~ 188 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTF 188 (315)
T ss_pred ceeecCCCcceeeeeeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcc
Confidence 789999999999999987654 22222 237889999999932 78999999999999999999 8888999
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
.+|++.++.+++||||. +.++|+.||.+.+||++.... +.. .+|...|.+++|+|+.-+|.++
T Consensus 189 ~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~---------------lys-l~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN---------------LYS-LEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred ccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce---------------eEe-ccCCCeEeeEEecCCceeEeec
Confidence 99999999999999999 678999999999999998633 333 4678899999999976665543
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
. +..|+|||+. ++.++.++.
T Consensus 252 t---------~~sIkIwdl~------~~~~v~~l~ 271 (315)
T KOG0279|consen 252 T---------ATSIKIWDLE------SKAVVEELK 271 (315)
T ss_pred c---------CCceEEEecc------chhhhhhcc
Confidence 2 2569999999 677776654
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=284.48 Aligned_cols=262 Identities=25% Similarity=0.493 Sum_probs=231.4
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
-+|..+.|.| +|+.|++|+..|.+.+|+.... .....++.|.+ +|.++.|++++.++++|+.+|.|
T Consensus 97 c~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 97 CPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDS-PVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred cceeeEEEcC-CCceeEeecccccEEEecCcee------------eHHHHhhhhcc-cceeEEEccCCCEEEEcCCCceE
Confidence 4799999999 9999999999999999998665 55566888987 89999999999999999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCeeEEEecC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
++|+..-.. +..+. .|...|++++|+|++ ..|++++.
T Consensus 163 KyWqpnmnn-----------------------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~Sd 200 (464)
T KOG0284|consen 163 KYWQPNMNN-----------------------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCSD 200 (464)
T ss_pred Eecccchhh-----------------------------------------hHHhhHhhhhhhheeccCCCC-ceeEEecC
Confidence 999976321 13333 455899999999987 78999999
Q ss_pred CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEE
Q 016547 191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (387)
||+|+|||....+ ....+.+|.-.|.+++|+| ...++++|+.|+.|++||.++ +.++.++..|...|..+.
T Consensus 201 Dg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 201 DGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAVK 271 (464)
T ss_pred CCeEEEEeccCCc--hhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEEE
Confidence 9999999998877 4566789999999999999 899999999999999999999 999999999999999999
Q ss_pred EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547 271 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG 350 (387)
Q Consensus 271 ~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d 350 (387)
|+|++.+ |++++.|..++++|++..+ .++.+.+|...|++++|+|-...|++ +||.|
T Consensus 272 f~~n~N~-Llt~skD~~~kv~DiR~mk---------------El~~~r~Hkkdv~~~~WhP~~~~lft-------sgg~D 328 (464)
T KOG0284|consen 272 FNPNGNW-LLTGSKDQSCKVFDIRTMK---------------ELFTYRGHKKDVTSLTWHPLNESLFT-------SGGSD 328 (464)
T ss_pred EcCCCCe-eEEccCCceEEEEehhHhH---------------HHHHhhcchhhheeecccccccccee-------eccCC
Confidence 9999986 5699999999999999642 36677999999999999999988887 77788
Q ss_pred ceEEEEecCCCcccccchhhhhh-hccCceEEEeeecC
Q 016547 351 GTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP 387 (387)
Q Consensus 351 g~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~f~P 387 (387)
|.|..|.+. ..+++.++ .+|...|++++++|
T Consensus 329 gsvvh~~v~------~~~p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 329 GSVVHWVVG------LEEPLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred CceEEEecc------ccccccCCCcccccceeeeeccc
Confidence 999999999 56666655 47999999999998
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.9e-43 Score=264.35 Aligned_cols=275 Identities=21% Similarity=0.346 Sum_probs=238.5
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.+.+.+|++.|+.+.|+| ++.+||||+.|..|.+|++.... +-...+++|.+ +|..+.|.+|++.++
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdc-----------eN~~~lkgHsg-AVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDC-----------ENFWVLKGHSG-AVMELHGMRDGSHIL 106 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccc-----------cceeeeccccc-eeEeeeeccCCCEEE
Confidence 456779999999999999 99999999999999999977653 34466789998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|++|+.||+++++. +..+++|..-|+.+.-+..|..
T Consensus 107 S~gtDk~v~~wD~~tG~~----------------------------------------~rk~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKR----------------------------------------IRKHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred EecCCceEEEEeccccee----------------------------------------eehhccccceeeecCccccCCe
Confidence 999999999999987644 3677889999999997777888
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
++.+++.|+++++||+++.+ .++.+ .....++++.|.. .+..+.+|+-|+.|++||++. ......+.+|.
T Consensus 147 lv~SgsdD~t~kl~D~R~k~--~~~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~ 216 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKE--AIKTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHA 216 (338)
T ss_pred EEEecCCCceEEEEeecccc--hhhcc-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeeccc
Confidence 99999999999999999877 34444 3456799999998 899999999999999999998 88999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC----CeeEEEEccCCCeEEEE
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD----KVVDFHWNASDPWTVVS 339 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~s 339 (387)
.+|+.+..+|+|.+++ +-+.|.++++||++.....+ .++..+.+|.. ....++|+|++.++-
T Consensus 217 DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~~p~~-----------R~v~if~g~~hnfeknlL~cswsp~~~~i~-- 282 (338)
T KOG0265|consen 217 DTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPFAPSQ-----------RCVKIFQGHIHNFEKNLLKCSWSPNGTKIT-- 282 (338)
T ss_pred CceeeEEeccCCCccc-cccccceEEEEEecccCCCC-----------ceEEEeecchhhhhhhcceeeccCCCCccc--
Confidence 9999999999999865 99999999999999753321 23555555433 457789999999877
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.|+.|..+++||.. ....+..+.||.+.|+.++|+|
T Consensus 283 ------ags~dr~vyvwd~~------~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 283 ------AGSADRFVYVWDTT------SRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ------cccccceEEEeecc------cccEEEEcCCcceeEEEeeecC
Confidence 78888999999999 7789999999999999999998
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=250.47 Aligned_cols=276 Identities=19% Similarity=0.372 Sum_probs=235.8
Q ss_pred eeeecC-CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 25 HKTIIH-PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 25 ~~~~~h-~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.+.+.| .+.|+.+...| +++.||+++. ..|++||+.+. ...++..+.+|.. -|+++.|..+|+.++
T Consensus 33 ~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~----------np~Pv~t~e~h~k-NVtaVgF~~dgrWMy 99 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSN----------NPNPVATFEGHTK-NVTAVGFQCDGRWMY 99 (311)
T ss_pred EEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCC----------CCCceeEEeccCC-ceEEEEEeecCeEEE
Confidence 455566 57899999999 8888988876 47999999988 3358999999988 589999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.||+++|||++...+ .....|..+|+++..+|+. .
T Consensus 100 TgseDgt~kIWdlR~~~~-----------------------------------------qR~~~~~spVn~vvlhpnQ-t 137 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSC-----------------------------------------QRNYQHNSPVNTVVLHPNQ-T 137 (311)
T ss_pred ecCCCceEEEEeccCccc-----------------------------------------chhccCCCCcceEEecCCc-c
Confidence 999999999999986322 2334567999999999998 7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
.|++|..+|.|++||+....... ...+.....|.++.+.| ++.+++.+...|..++|++-..+......++.+++.|+
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred eEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 89999999999999998875321 22334557899999999 99999999999999999998765555577888999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
+.+....+||++++ ||+++.|.+++||+.+.. - ..-..+.+|..++.+.+||.++.||+
T Consensus 216 ~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-~-------------kle~~l~gh~rWvWdc~FS~dg~Ylv------ 274 (311)
T KOG0315|consen 216 GHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-F-------------KLELVLTGHQRWVWDCAFSADGEYLV------ 274 (311)
T ss_pred ceEEEEEECCCCcE-EEeecCCceEEEEecCCc-e-------------eeEEEeecCCceEEeeeeccCccEEE------
Confidence 99999999999997 679999999999999874 1 23456789999999999999999999
Q ss_pred CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
||+.|+.+++|++. .++.++..++|..+..+++..
T Consensus 275 --Tassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 275 --TASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --ecCCCCceeecccc------cCceeeecCCcccccEEEEee
Confidence 99999999999999 799999999999988887753
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-40 Score=247.46 Aligned_cols=254 Identities=17% Similarity=0.290 Sum_probs=211.0
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.||...|..+..++ ++++.++++.|+++++||+.++ ++.+.|.+|.. .|.+++|++|++.++
T Consensus 56 ~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g------------~~t~~f~GH~~-dVlsva~s~dn~qiv 121 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG------------ESTRRFVGHTK-DVLSVAFSTDNRQIV 121 (315)
T ss_pred eeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC------------cEEEEEEecCC-ceEEEEecCCCceee
Confidence 456678999999999999 9999999999999999999999 78899999998 699999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEccCC
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSS 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 181 (387)
+|+.|++|++|++..... .+.. .+.+.|.|+.|+|+.
T Consensus 122 SGSrDkTiklwnt~g~ck-----------------------------------------~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 122 SGSRDKTIKLWNTLGVCK-----------------------------------------YTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred cCCCcceeeeeeecccEE-----------------------------------------EEEecCCCcCcEEEEEEcCCC
Confidence 999999999999874321 2222 237899999999984
Q ss_pred -CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 182 -AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 182 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
+.++++++.|++|++||+++.+ ....+.+|.+.++.++++| ||.+.++|+.||.+.+||++. ++.+..+.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl~ 231 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSLE 231 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC------CceeEecc
Confidence 3689999999999999999887 6778889999999999999 999999999999999999998 88888777
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee-eeccCCCCeeEEEEccCCCeEEEE
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
|...|.+++|+|+... |+.+ .+..|+|||+.......+..+. ... ..........+++|+++|..|+
T Consensus 232 -a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~l~~d-------~~g~s~~~~~~~clslaws~dG~tLf-- 299 (315)
T KOG0279|consen 232 -AFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEELKLD-------GIGPSSKAGDPICLSLAWSADGQTLF-- 299 (315)
T ss_pred -CCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhhcccc-------ccccccccCCcEEEEEEEcCCCcEEE--
Confidence 7889999999998764 4344 4666999999985332211110 000 1122234568899999999999
Q ss_pred ecCCCCCCCCCceEEEEecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~ 359 (387)
+|-.|+.|++|.+.
T Consensus 300 ------~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 ------AGYTDNVIRVWQVA 313 (315)
T ss_pred ------eeecCCcEEEEEee
Confidence 88889999999876
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=241.88 Aligned_cols=283 Identities=22% Similarity=0.384 Sum_probs=232.6
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE-eccCCCceEEEEECCCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~~~~~~ 100 (387)
.....+.+|++.|..++|+|..|.+||||+.|..|+||+...+. ...+...+ .+|+. .|.+++|+|.|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------s~~ck~vld~~hkr-sVRsvAwsp~g~ 74 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------SWTCKTVLDDGHKR-SVRSVAWSPHGR 74 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------cEEEEEeccccchh-eeeeeeecCCCc
Confidence 44566778999999999999548899999999999999998531 11333344 34665 799999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
+|+++|.|.++.||.-..+ .++.+..+.+|...|.|++|+++
T Consensus 75 ~La~aSFD~t~~Iw~k~~~--------------------------------------efecv~~lEGHEnEVK~Vaws~s 116 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDG--------------------------------------EFECVATLEGHENEVKCVAWSAS 116 (312)
T ss_pred EEEEeeccceEEEeecCCC--------------------------------------ceeEEeeeeccccceeEEEEcCC
Confidence 9999999999999976532 44566889999999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 181 SAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
| ++||+++.|+.|-||.+.... ..+...++.|...|..+.|+| ...+|++++.|++|++|+-..... ..++.++
T Consensus 117 G-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl 191 (312)
T KOG0645|consen 117 G-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD---WECVQTL 191 (312)
T ss_pred C-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC---eeEEEEe
Confidence 9 899999999999999987543 346678889999999999999 999999999999999998773211 7899999
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
.+|...|.+++|++.|.. |+++++|++++||-.... - ...|...++.++|. ...++
T Consensus 192 ~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~-~------------------~~~~sr~~Y~v~W~--~~~Ia-- 247 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTD-L------------------SGMHSRALYDVPWD--NGVIA-- 247 (312)
T ss_pred cCccceEEEEEecCCCce-EEEecCCcceEeeeeccC-c------------------chhcccceEeeeec--ccceE--
Confidence 999999999999999986 579999999999986642 0 13577899999998 33344
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhh-hhhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~f~P 387 (387)
|++.|+.|++|.-....-.+.-+++. .-..|...|++|++.|
T Consensus 248 ------S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 248 ------SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred ------eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence 78888999999988544444445544 4457999999999987
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=279.14 Aligned_cols=277 Identities=25% Similarity=0.474 Sum_probs=244.2
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..+..|.+++|..|+|.-++.++||.++..+.++++++.+. .+ ..+.||++ .|.++....+|-+|+
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~------------~c-~ii~GH~e-~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS------------YC-QIIPGHTE-AVLSLDVWSSGDLLA 381 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC------------ce-EEEeCchh-heeeeeecccCcEEE
Confidence 34567899999999999878999999999999999988887 33 38999998 789999667888999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
||+.|+++++|.+++... ...++....+|...|.+++++..+..
T Consensus 382 t~sKD~svilWr~~~~~~------------------------------------~~~~~a~~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCS------------------------------------KSLCVAQANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred EecCCceEEEEEecCCcc------------------------------------hhhhhhhhcccccccceeeecccCcc
Confidence 999999999999954321 22334566799999999999988888
Q ss_pred eEEEecCCCeEEEEEccCCCC---cee----EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 184 EFCSVGDDSCLILWDARVGTS---PVI----KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~---~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
+|++++.|+++++|++...+. +.. .....|...|++++++| +..++++||.|.+.+||++.. ....
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~ 498 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLL 498 (775)
T ss_pred EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC------ceEE
Confidence 999999999999999987321 111 13457999999999999 999999999999999999997 8999
Q ss_pred EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 336 (387)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (387)
..+.+|...|.++.|+|..+ ++|++|.|++|+||.+.+. .++.++.||...|..+.|-.++..|
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f---------------SClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF---------------SCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred EEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc---------------eeeeeecCccceeEeeeeeeCCcEE
Confidence 99999999999999999988 6789999999999999986 6789999999999999999999999
Q ss_pred EEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 337 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 337 ~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+ +++.||.|++|++. +++|+.++.+|++.|++++-+|
T Consensus 563 i--------S~~adGliKlWnik------t~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 563 I--------SAGADGLIKLWNIK------TNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred E--------eccCCCcEEEEecc------chhhhhhhhhccceeEEEeecC
Confidence 9 89999999999999 8999999999999999998765
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.1e-40 Score=264.15 Aligned_cols=261 Identities=18% Similarity=0.405 Sum_probs=230.8
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-+..|++++|+. +|.+||+|+.||.++||+.... ...++..|.+ +|.++.|+..|+||++++.|+
T Consensus 234 ~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ 298 (524)
T KOG0273|consen 234 SNKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKG-PIFSLKWNKKGTYILSGGVDG 298 (524)
T ss_pred ccCCcceEEecC-CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCC-ceEEEEEcCCCCEEEeccCCc
Confidence 457899999999 9999999999999999998765 5677888988 899999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
++.+||..++... +.+..|..+-..+.|-.+. .|++++
T Consensus 299 ttilwd~~~g~~~----------------------------------------q~f~~~s~~~lDVdW~~~~--~F~ts~ 336 (524)
T KOG0273|consen 299 TTILWDAHTGTVK----------------------------------------QQFEFHSAPALDVDWQSND--EFATSS 336 (524)
T ss_pred cEEEEeccCceEE----------------------------------------EeeeeccCCccceEEecCc--eEeecC
Confidence 9999999765432 5566677777889997664 699999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 269 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (387)
.|+.|+++.+.... ....+.+|.++|.+|.|+| .+.+|++++.|++++||.+.. ......+.+|+..|..+
T Consensus 337 td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 337 TDGCIHVCKVGEDR--PVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTI 407 (524)
T ss_pred CCceEEEEEecCCC--cceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeE
Confidence 99999999998776 5777888999999999999 999999999999999999988 88999999999999999
Q ss_pred EEcCCCC--------eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 270 QWSPDKS--------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 270 ~~~~~~~--------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
.|+|.|. .++++++.|++|++||+..+ .++..+..|..+|.+++|+|++.|++
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---------------v~i~~f~kH~~pVysvafS~~g~ylA---- 468 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---------------VPIHTLMKHQEPVYSVAFSPNGRYLA---- 468 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---------------ceeEeeccCCCceEEEEecCCCcEEE----
Confidence 9999763 25679999999999999986 55788899999999999999999998
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
+|+.||.|.+|+.. .++.++...+ .+.|..|.|+
T Consensus 469 ----sGs~dg~V~iws~~------~~~l~~s~~~-~~~Ifel~Wn 502 (524)
T KOG0273|consen 469 ----SGSLDGCVHIWSTK------TGKLVKSYQG-TGGIFELCWN 502 (524)
T ss_pred ----ecCCCCeeEecccc------chheeEeecC-CCeEEEEEEc
Confidence 99999999999999 7888888875 4557777775
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=243.73 Aligned_cols=246 Identities=23% Similarity=0.367 Sum_probs=213.5
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-..-|..++|+| .++++|+|+-|+...||++.+.+... ..+..+.+.+|++ -+.|+.|.+ ...|+|++.|.
T Consensus 96 ~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g------~~~v~r~l~gHtg-ylScC~f~d-D~~ilT~SGD~ 166 (343)
T KOG0286|consen 96 PSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEG------NVRVSRELAGHTG-YLSCCRFLD-DNHILTGSGDM 166 (343)
T ss_pred CceeEEEEEECC-CCCeEEecCcCceeEEEecccccccc------cceeeeeecCccc-eeEEEEEcC-CCceEecCCCc
Confidence 356789999999 99999999999999999998652211 2245677999998 789999987 55789999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+..+||+++++. +..+.+|.+.|.++.++|...+.|++|+
T Consensus 167 TCalWDie~g~~----------------------------------------~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 167 TCALWDIETGQQ----------------------------------------TQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred eEEEEEcccceE----------------------------------------EEEecCCcccEEEEecCCCCCCeEEecc
Confidence 999999987543 4778899999999999994449999999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--ccceEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--HSAAVL 267 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~~i~ 267 (387)
-|+..++||++.+. +.+.+.+|++.|++++|.| +|.-|++|++|++.++||+|. .+.+..+.. -..+|+
T Consensus 207 cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELAVYSHDSIICGIT 277 (343)
T ss_pred cccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEeeeccCcccCCce
Confidence 99999999999997 7899999999999999999 999999999999999999998 666766652 246799
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg 347 (387)
+++||..|+.|| +|..|..+.+||.-+. ..+..+.+|+..|+++..+|||--+. ||
T Consensus 278 Sv~FS~SGRlLf-agy~d~~c~vWDtlk~---------------e~vg~L~GHeNRvScl~~s~DG~av~--------Tg 333 (343)
T KOG0286|consen 278 SVAFSKSGRLLF-AGYDDFTCNVWDTLKG---------------ERVGVLAGHENRVSCLGVSPDGMAVA--------TG 333 (343)
T ss_pred eEEEcccccEEE-eeecCCceeEeecccc---------------ceEEEeeccCCeeEEEEECCCCcEEE--------ec
Confidence 999999999655 7788999999998875 34677889999999999999998777 99
Q ss_pred CCCceEEEEe
Q 016547 348 GGGGTLQIWR 357 (387)
Q Consensus 348 ~~dg~i~iw~ 357 (387)
+.|.++|||.
T Consensus 334 SWDs~lriW~ 343 (343)
T KOG0286|consen 334 SWDSTLRIWA 343 (343)
T ss_pred chhHheeecC
Confidence 9999999994
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.5e-40 Score=279.02 Aligned_cols=246 Identities=22% Similarity=0.454 Sum_probs=216.9
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+.||.++|..+.|+| +.++|++++.|++|++|.+++. .....++||.. +|+.+.|+|.|-|+
T Consensus 443 ~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~------------s~~V~y~GH~~-PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTW------------SCLVIYKGHLA-PVWDVQFAPRGYYF 508 (707)
T ss_pred eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccc------------eeEEEecCCCc-ceeeEEecCCceEE
Confidence 3455889999999999999 8899999999999999999999 78889999998 89999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
||++.|++.++|.... ..+++.+.+|...|.|+.|+|+.
T Consensus 509 atas~D~tArLWs~d~----------------------------------------~~PlRifaghlsDV~cv~FHPNs- 547 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDH----------------------------------------NKPLRIFAGHLSDVDCVSFHPNS- 547 (707)
T ss_pred EecCCCceeeeeeccc----------------------------------------CCchhhhcccccccceEEECCcc-
Confidence 9999999999999863 34668889999999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
+++++|+.|.+|++||+.++. .++.+.+|.++|++++|+| +|++|++|+.||.|.+||+.+ +.++..+.+|
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~H 618 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGH 618 (707)
T ss_pred cccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------Ccchhhhhcc
Confidence 899999999999999999998 6889999999999999999 999999999999999999999 8999999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC---------CCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG---------PRTTNYPAGLFFQHAGHRDKVVDFHWNASD 333 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (387)
.+.|.++.|+.+|. +||+|+.|..|++||+.......... .........++..+..-..+|..+.|...+
T Consensus 619 t~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred cCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 99999999999999 68899999999999998754441110 011112334566677777799999998755
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-40 Score=262.32 Aligned_cols=280 Identities=21% Similarity=0.363 Sum_probs=231.5
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE---eccCCCceEEEEECCCCCE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL---TGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~v~~~~~~~~~~~ 101 (387)
.+...|..+|.+.+|+|....++++|+.|-..++|++........... ..+..... ...+...|++++|+.+|..
T Consensus 172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~--~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL--VLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh--hhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 355569999999999996666999999999999999875211100000 00000001 1122245999999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
||+|+.||.+++|+... ..+..+..|+++|.++.|+..|
T Consensus 250 LatG~~~G~~riw~~~G-----------------------------------------~l~~tl~~HkgPI~slKWnk~G 288 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDG-----------------------------------------NLISTLGQHKGPIFSLKWNKKG 288 (524)
T ss_pred EEEeecCcEEEEEecCc-----------------------------------------hhhhhhhccCCceEEEEEcCCC
Confidence 99999999999999863 3446788899999999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
.++++++.|+++.+||..++. ....+..|..+-..+.|- +...|++++.|+.|+++.+.. ..|+.++.+
T Consensus 289 -~yilS~~vD~ttilwd~~~g~--~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~------~~P~~t~~G 357 (524)
T KOG0273|consen 289 -TYILSGGVDGTTILWDAHTGT--VKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGE------DRPVKTFIG 357 (524)
T ss_pred -CEEEeccCCccEEEEeccCce--EEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecC------CCcceeeec
Confidence 899999999999999999888 667777788887788887 477899999999999999998 889999999
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC-------
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP------- 334 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 334 (387)
|.+.|.++.|+|.+. ||++++.|++++||++... .....+.+|+..|..+.|+|+|+
T Consensus 358 H~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~---------------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQS---------------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred ccCceEEEEECCCCc-eEEEecCCCeeEeeecCCC---------------cchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 999999999999999 6889999999999998775 34667789999999999999764
Q ss_pred -eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 335 -WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 335 -~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..+++ ++.|++|++||+. .+.++..+..|..+|++|+|+|
T Consensus 422 ~~~l~s-------as~dstV~lwdv~------~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 422 NLMLAS-------ASFDSTVKLWDVE------SGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred CceEEE-------eecCCeEEEEEcc------CCceeEeeccCCCceEEEEecC
Confidence 34554 4455999999999 8999999999999999999998
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=238.90 Aligned_cols=272 Identities=22% Similarity=0.335 Sum_probs=234.4
Q ss_pred cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
|..+...+..|+++|+++.|+- +|++.+|++.|.+|++|+...+ ..+.++.+|.. .|..++.+.|+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~-EVlD~~~s~Dn 71 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGH-EVLDAALSSDN 71 (307)
T ss_pred cchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCc-eeeeccccccc
Confidence 3444556678999999999999 9999999999999999999988 88999999987 79999999999
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
..+++|+.|+.+.+||+++++. .+.+++|...|+.++|+.
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv----------------------------------------~Rr~rgH~aqVNtV~fNe 111 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKV----------------------------------------DRRFRGHLAQVNTVRFNE 111 (307)
T ss_pred cccccCCCCceEEEEEcccCee----------------------------------------eeecccccceeeEEEecC
Confidence 9999999999999999987643 477899999999999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+. ..+++|+.|..+++||.++.....++.+......|.++... +..+++|+.||++|.||++. +....-+
T Consensus 112 es-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy 181 (307)
T KOG0316|consen 112 ES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDY 181 (307)
T ss_pred cc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhh
Confidence 87 89999999999999999998766778887888899999884 57899999999999999998 6665544
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe--eEEEEccCCCeEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTV 337 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~ 337 (387)
- ..+|+++.|+++++..| .++.|+.+++.|-.++ +++....+|...= ...+++.....++
T Consensus 182 ~--g~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG---------------klL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 182 F--GHPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG---------------KLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred c--CCcceeEEecCCCCEEE-Eeeccceeeecccchh---------------HHHHHhcccccceeeeeeeecccceeEE
Confidence 4 56899999999999866 6778999999998886 4566678887644 4455666666666
Q ss_pred EEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCce-EEEeeecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH-VISCTSKP 387 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-v~~~~f~P 387 (387)
+|+.||.|++||+. ....+..+..+... |.+++++|
T Consensus 244 --------sgSEDG~Vy~wdLv------d~~~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 244 --------SGSEDGKVYFWDLV------DETQISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred --------eccCCceEEEEEec------cceeeeeeccCCceeEEeeeccc
Confidence 88888999999999 68888889988888 89999988
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.9e-41 Score=263.04 Aligned_cols=248 Identities=22% Similarity=0.387 Sum_probs=218.0
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
+..|.++|+++.|++ ++.++++|+.+|.|++|+..-. -+..+..|+...|.+++|+|+...+++|+
T Consensus 134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 346999999999999 9999999999999999998654 34556677755899999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.||+|+|||...... ...+.+|.-.|.++.|+|.. .+++
T Consensus 200 dDg~ikiWdf~~~ke----------------------------------------e~vL~GHgwdVksvdWHP~k-gLia 238 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKE----------------------------------------ERVLRGHGWDVKSVDWHPTK-GLIA 238 (464)
T ss_pred CCCeEEEEeccCCch----------------------------------------hheeccCCCCcceeccCCcc-ceeE
Confidence 999999999975322 25668999999999999998 7999
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+++.|..|++||.+++. ++..+..|...|..+.|+| ++++|+++|.|..+++||+++ .+.+..+++|...+
T Consensus 239 sgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDV 309 (464)
T ss_pred EccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhh
Confidence 99999999999999999 7888899999999999999 889999999999999999998 78899999999999
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
++++|+|-.+.||++|+.||.|..|.+... ++ +...-.+|...|++++|+|-|..|+ +
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p-------------~~~i~~AHd~~iwsl~~hPlGhil~--------t 367 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EP-------------LGEIPPAHDGEIWSLAYHPLGHILA--------T 367 (464)
T ss_pred eeeccccccccceeeccCCCceEEEecccc-cc-------------ccCCCcccccceeeeeccccceeEe--------e
Confidence 999999998889999999999999999842 11 1223368999999999999887555 7
Q ss_pred CCCCceEEEEecCC
Q 016547 347 TGGGGTLQIWRMSD 360 (387)
Q Consensus 347 g~~dg~i~iw~~~~ 360 (387)
|+.|.++++|.-..
T Consensus 368 gsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNR 381 (464)
T ss_pred cCCCcceeeeccCC
Confidence 77779999998663
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=240.57 Aligned_cols=261 Identities=24% Similarity=0.426 Sum_probs=226.0
Q ss_pred cCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 18 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
+.+-+.....+.-.+.+..++|++...+.+++++.||++++||+.... .|++.++.|.. .|.++.|++
T Consensus 47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-----------~Pi~~~kEH~~-EV~Svdwn~ 114 (311)
T KOG0277|consen 47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-----------KPIHKFKEHKR-EVYSVDWNT 114 (311)
T ss_pred CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-----------cchhHHHhhhh-heEEecccc
Confidence 344566667777889999999999899999999999999999955442 68899999998 799999998
Q ss_pred -CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 98 -TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 98 -~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
++..++++|.|++|++|+...+ ..+.++.+|...|...+
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~----------------------------------------~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRP----------------------------------------NSVQTFNGHNSCIYQAA 154 (311)
T ss_pred ccceeEEeeccCCceEeecCCCC----------------------------------------cceEeecCCccEEEEEe
Confidence 4566888899999999998643 33477899999999999
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
|+|..+++|++++.|+++++||++...+. ..+..|...|.++.|+..+.+.+++|+.|+.|+.||+++. ..++
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-----r~pl 227 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKF--MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-----RTPL 227 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCce--eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-----cccc
Confidence 99998899999999999999999987633 3378899999999999989999999999999999999986 6789
Q ss_pred EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 336 (387)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (387)
.++.+|+-.|..++|||....+||+++.|-+++|||..... .++.+...|..-|..+.|++-.+..
T Consensus 228 ~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------------s~~e~~~~HtEFv~g~Dws~~~~~~ 293 (311)
T KOG0277|consen 228 FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------------SAIETVDHHTEFVCGLDWSLFDPGQ 293 (311)
T ss_pred eeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------------hhhhhhhccceEEeccccccccCce
Confidence 99999999999999999988899999999999999998643 2355566788899999999987777
Q ss_pred EEEecCCCCCCCCCceEEEEec
Q 016547 337 VVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 337 ~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
+| ++|.|..++||+-
T Consensus 294 vA-------s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 294 VA-------STGWDELLYVWNP 308 (311)
T ss_pred ee-------ecccccceeeecc
Confidence 76 6667799999984
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-38 Score=255.99 Aligned_cols=317 Identities=18% Similarity=0.219 Sum_probs=241.4
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe---ccCCCceEEEEE
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT---GHQDNAEFALAM 95 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~v~~~~~ 95 (387)
.|+.-......|..-|+|++|+| ++.++||.+.||+|.+||-.++ ..+..+. +|.+ .|+++.|
T Consensus 178 PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg------------e~vg~l~~~~aHkG-sIfalsW 243 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG------------EKVGELEDSDAHKG-SIFALSW 243 (603)
T ss_pred CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc------------cEEEEecCCCCccc-cEEEEEE
Confidence 34444455556999999999999 8999999999999999999999 5556666 8888 5999999
Q ss_pred CCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceecc------CCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 96 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ------SPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 96 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
+||++.+++++.|.+++|||+.+......+...... ....+-.. ..-...+.+.+.+.....+...+.+|.
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v---~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV---EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred CCCCceEEEecCCceEEEEEeeccceEEEeecCCch---hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 999999999999999999999988655544332220 01111111 111234556666666777889999999
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee-----------------------------E------------
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-----------------------------K------------ 208 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------~------------ 208 (387)
..|+++..+|++ .+|++|+.||.|.-||..++..-.+ +
T Consensus 321 K~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~ 399 (603)
T KOG0318|consen 321 KSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS 399 (603)
T ss_pred cceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc
Confidence 999999999999 8999999999999999876521000 0
Q ss_pred ------------------------------Eeec--------cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 209 ------------------------------VEKA--------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 209 ------------------------------~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
.+.. -.-...+++++| +++.+++|+.||.|++|.+....
T Consensus 400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~-- 476 (603)
T KOG0318|consen 400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDE-- 476 (603)
T ss_pred ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCc--
Confidence 0000 011234688899 99999999999999999998632
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
.........|.++|+++++|||+.+ ||++...+.+.+||+.+.... .....-|...|.+++|+
T Consensus 477 --l~ee~~~~~h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~~~~--------------~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 477 --LKEEAKLLEHRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASREVK--------------TNRWAFHTAKINCVAWS 539 (603)
T ss_pred --ccceeeeecccCCceEEEECCCCcE-EEEeccCCcEEEEEcccCcee--------------cceeeeeeeeEEEEEeC
Confidence 2344455679999999999999996 689999999999999874221 22233489999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
|++..++ ||+.|..|.||++..+ .+.+.....|...|+.|.|-
T Consensus 540 P~n~~vA--------TGSlDt~Viiysv~kP-----~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 540 PNNKLVA--------TGSLDTNVIIYSVKKP-----AKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred CCceEEE--------eccccceEEEEEccCh-----hhheEeccccccCceeEEEe
Confidence 9988766 8888899999999953 33356667899889999873
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=277.64 Aligned_cols=267 Identities=26% Similarity=0.450 Sum_probs=229.9
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
|...|.|+.|++ +++.+++++.|+.+++|+....+. .....+.+|.. .|..++|+|+++++++++.|+
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~-~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTR-GVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc----------hhhcccccccc-ceeeeEECCCCcEEEEecCCc
Confidence 378999999999 888999999999999999976621 14555688887 699999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+|++||+... ...++++.+|...|++++|+|++ +++++|+
T Consensus 226 tiriwd~~~~---------------------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs 265 (456)
T KOG0266|consen 226 TLRIWDLKDD---------------------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGS 265 (456)
T ss_pred eEEEeeccCC---------------------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEec
Confidence 9999999432 23457889999999999999999 9999999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC--ceEEeccccce--
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHSAA-- 265 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~-- 265 (387)
.|++|++||+++++ +...+.+|...|++++|++ ++++|++++.||.|++||+.+ +. ++..+..+...
T Consensus 266 ~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~ 336 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP 336 (456)
T ss_pred CCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence 99999999999977 7889999999999999999 999999999999999999998 66 45677666655
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC---eeEEEEccCCCeEEEEecC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~s~s~ 342 (387)
++++.|+|++.++ +++..|+.+++||+.... ......+|... +.+...++.+.+++
T Consensus 337 ~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~----- 395 (456)
T KOG0266|consen 337 VTSVQFSPNGKYL-LSASLDRTLKLWDLRSGK---------------SVGTYTGHSNLVRCIFSPTLSTGGKLIY----- 395 (456)
T ss_pred eeEEEECCCCcEE-EEecCCCeEEEEEccCCc---------------ceeeecccCCcceeEecccccCCCCeEE-----
Confidence 9999999999985 589999999999999863 34455666653 44455577788877
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhhhhhcc-CceEEEeeecC
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCTSKP 387 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~f~P 387 (387)
+|+.|+.|++|++. ++..+..+.+| ...|..++++|
T Consensus 396 ---sg~~d~~v~~~~~~------s~~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 396 ---SGSEDGSVYVWDSS------SGGILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred ---EEeCCceEEEEeCC------ccchhhhhcCCCCCceeccccCC
Confidence 88888999999999 79999999999 88888888876
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.2e-39 Score=249.44 Aligned_cols=245 Identities=26% Similarity=0.457 Sum_probs=221.4
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
....+|.+-|.|+++-| ...+++||+.|++|+|||+.++ +...++.||-. .|..+++|+...||.+
T Consensus 145 rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~-~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATG------------QLKLTLTGHIE-TVRGVAVSKRHPYLFS 210 (460)
T ss_pred hhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccC------------eEEEeecchhh-eeeeeeecccCceEEE
Confidence 34557999999999999 7899999999999999999999 88899999998 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|+.|+.||++.. +.++.+.+|-..|.|++.+|.- ..
T Consensus 211 ~gedk~VKCwDLe~n----------------------------------------kvIR~YhGHlS~V~~L~lhPTl-dv 249 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYN----------------------------------------KVIRHYHGHLSGVYCLDLHPTL-DV 249 (460)
T ss_pred ecCCCeeEEEechhh----------------------------------------hhHHHhccccceeEEEeccccc-ee
Confidence 999999999999854 3447788999999999999998 78
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++|+.|.++++||+++.. .+..+.+|..+|.++.+.| ....+++|+.|++|++||++. ++....+..|..
T Consensus 250 l~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a------gkt~~tlt~hkk 320 (460)
T KOG0285|consen 250 LVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRA------GKTMITLTHHKK 320 (460)
T ss_pred EEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeecc------CceeEeeecccc
Confidence 9999999999999999988 6888999999999999999 777899999999999999999 899999999999
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
.+.+++.+|... +||+++.| .|+-|++..+ ..+..+.+|..-|++++.+.|+ +++
T Consensus 321 svral~lhP~e~-~fASas~d-nik~w~~p~g---------------~f~~nlsgh~~iintl~~nsD~-v~~------- 375 (460)
T KOG0285|consen 321 SVRALCLHPKEN-LFASASPD-NIKQWKLPEG---------------EFLQNLSGHNAIINTLSVNSDG-VLV------- 375 (460)
T ss_pred eeeEEecCCchh-hhhccCCc-cceeccCCcc---------------chhhccccccceeeeeeeccCc-eEE-------
Confidence 999999999876 68898877 5999999986 3455678999999999998876 455
Q ss_pred CCCCCCceEEEEecC
Q 016547 345 DSTGGGGTLQIWRMS 359 (387)
Q Consensus 345 ~tg~~dg~i~iw~~~ 359 (387)
+|+++|.+..||..
T Consensus 376 -~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 376 -SGGDNGSIMFWDWK 389 (460)
T ss_pred -EcCCceEEEEEecC
Confidence 78888999999998
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=233.84 Aligned_cols=258 Identities=14% Similarity=0.295 Sum_probs=216.1
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
..-+|++++.|-+|++|...++ .+..+++... +.|+.+...|++++|++++ ...||+||+++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG------------~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~--- 71 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG------------ICSRTIQHPD-SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSN--- 71 (311)
T ss_pred CceEEEeccCcceeeeeehhcC------------eEEEEEecCc-cceeeEEEcCCcchhhhcc-CCeeEEEEccCC---
Confidence 4568999999999999999999 7777776554 4799999999999999988 468999999863
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 202 (387)
...++..+.+|+..|+.+.|..+| +.+++|++||+++|||++..
T Consensus 72 -----------------------------------np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 72 -----------------------------------NPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred -----------------------------------CCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc
Confidence 234678899999999999999999 89999999999999999985
Q ss_pred CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEE
Q 016547 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s 281 (387)
. +.+ ...|.++|+++..+| +...|++|..+|.|++||+.. ..+..++- .....|.++...|+|.+ ++.
T Consensus 116 ~--~qR-~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~------~~c~~~liPe~~~~i~sl~v~~dgsm-l~a 184 (311)
T KOG0315|consen 116 S--CQR-NYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGE------NSCTHELIPEDDTSIQSLTVMPDGSM-LAA 184 (311)
T ss_pred c--cch-hccCCCCcceEEecC-CcceEEeecCCCcEEEEEccC------CccccccCCCCCcceeeEEEcCCCcE-EEE
Confidence 5 333 345779999999999 888999999999999999998 44444443 23467999999999996 567
Q ss_pred ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
+...|..++|++-..... .+...+..+..|++.+..+.+||++++|+ |+|.|.+++||+.++.
T Consensus 185 ~nnkG~cyvW~l~~~~~~---------s~l~P~~k~~ah~~~il~C~lSPd~k~la--------t~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTA---------SELEPVHKFQAHNGHILRCLLSPDVKYLA--------TCSSDKTVKIWNTDDF 247 (311)
T ss_pred ecCCccEEEEEccCCCcc---------ccceEhhheecccceEEEEEECCCCcEEE--------eecCCceEEEEecCCc
Confidence 888999999999873222 23345677899999999999999999988 7888899999999942
Q ss_pred cccccchhhhhhhccCceEEEeeec
Q 016547 362 IYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
-+.-..+.+|...++.++||
T Consensus 248 -----~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 248 -----FKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred -----eeeEEEeecCCceEEeeeec
Confidence 24446788999999999998
No 27
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-38 Score=236.63 Aligned_cols=269 Identities=20% Similarity=0.336 Sum_probs=224.7
Q ss_pred EEEEecCCCCcEEEEec-------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEec
Q 016547 35 NRIRELPQNTKIVATHT-------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG 106 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~ 106 (387)
.++.|+|--.+.||.+. ..|++.|.++...+.. .....+.-.. .+..++|+++ .+.+++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi---------~e~~s~d~~D--~LfdV~Wse~~e~~~~~a~ 80 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI---------QECQSYDTED--GLFDVAWSENHENQVIAAS 80 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe---------EEEEeeeccc--ceeEeeecCCCcceEEEEe
Confidence 67889996666665553 3689999998754211 2222333333 5889999986 45788899
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.||++++||+.. ...++..++.|..+|.++.|++..+..++
T Consensus 81 GDGSLrl~d~~~---------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 81 GDGSLRLFDLTM---------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred cCceEEEeccCC---------------------------------------CCcchhHHHhhhhheEEeccccccceeEE
Confidence 999999999642 23467889999999999999998878899
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+++-|++|++|+...++ .+.++.+|...|...+|+|..++++++++.|+.+++||++.. ++.+. +..|...|
T Consensus 122 tsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Ei 193 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEI 193 (311)
T ss_pred eeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----CceeE-EEecccee
Confidence 99999999999998877 577899999999999999999999999999999999999984 55555 89999999
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.++.|+.-+++++++|+.|+.|++||+++...+ +..+.+|.-.|..+.|||....++++||.|
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYD--- 256 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--------------LFELNGHGLAVRKVKFSPHHASLLASASYD--- 256 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcccc--------------ceeecCCceEEEEEecCcchhhHhhhcccc---
Confidence 999999999999999999999999999986543 677799999999999999999899866665
Q ss_pred CCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 347 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 347 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
-++||||... ....+++...|+.-|..++||+
T Consensus 257 ----mT~riw~~~~-----~ds~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 257 ----MTVRIWDPER-----QDSAIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred ----ceEEeccccc-----chhhhhhhhccceEEecccccc
Confidence 9999999984 4667888899999999999985
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-40 Score=265.82 Aligned_cols=280 Identities=18% Similarity=0.285 Sum_probs=239.5
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 98 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~ 98 (387)
.|....+...||+..|.++.|+|..+.+|++|+.|+.|+||++.... .+++++.+|.. +|..++|+++
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k-~Vrd~~~s~~ 269 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRK-PVRDASFNNC 269 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchh-hhhhhhcccc
Confidence 34555677789999999999999899999999999999999998842 78899999998 8999999999
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
|..+++++.|+.|++||++++++...+.. ...++|+.|+
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----------------------------------------~~~~~cvkf~ 308 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHL-----------------------------------------DKVPTCVKFH 308 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEec-----------------------------------------CCCceeeecC
Confidence 99999999999999999998876543322 3568999999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
|++.+.|++|+.|+.|+.||+++++ .+..+..|-+.|..+.|-+ ++..+++.++|+++++|+.+. ..++..
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~------~v~ik~ 379 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI------PVPIKN 379 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC------Cccchh
Confidence 9998999999999999999999998 6778888999999999999 999999999999999999997 444433
Q ss_pred e-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCe
Q 016547 259 F-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPW 335 (387)
Q Consensus 259 ~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 335 (387)
+ ..+.....++..+|++++ +++-+.|+.|.+|.+...-+ ......+.+|.. .-..+.|||||++
T Consensus 380 i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r------------~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 380 IADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFR------------LNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred hcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccc------------cCHhhhhcceeccCceeeEEEcCCCCe
Confidence 3 223345678999999996 67888999999999765422 133445567654 4577899999999
Q ss_pred EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|+ +|..||.+.+||.+ +-+++..++.|.+++..++|+|
T Consensus 447 l~--------SGdsdG~v~~wdwk------t~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 447 LC--------SGDSDGKVNFWDWK------TTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred EE--------eecCCccEEEeech------hhhhhhccccCCcceEEEEecC
Confidence 98 99999999999999 8999999999999999999998
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.8e-38 Score=234.02 Aligned_cols=254 Identities=18% Similarity=0.320 Sum_probs=211.1
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
..-+|+..|+.++|+| .+++||+|+.|.++.||.-..+ ..+++..++||.. .|.|++|+++|.+||+|
T Consensus 56 ld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~----------efecv~~lEGHEn-EVK~Vaws~sG~~LATC 123 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDG----------EFECVATLEGHEN-EVKCVAWSASGNYLATC 123 (312)
T ss_pred ccccchheeeeeeecC-CCcEEEEeeccceEEEeecCCC----------ceeEEeeeecccc-ceeEEEEcCCCCEEEEe
Confidence 3346999999999999 8999999999999999987765 4478899999998 79999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
++|++|-||.+... ...+....++.|+..|..+.|+|.. .+|
T Consensus 124 SRDKSVWiWe~ded-------------------------------------dEfec~aVL~~HtqDVK~V~WHPt~-dlL 165 (312)
T KOG0645|consen 124 SRDKSVWIWEIDED-------------------------------------DEFECIAVLQEHTQDVKHVIWHPTE-DLL 165 (312)
T ss_pred eCCCeEEEEEecCC-------------------------------------CcEEEEeeeccccccccEEEEcCCc-cee
Confidence 99999999998742 3455668899999999999999987 799
Q ss_pred EEecCCCeEEEEEcc-CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 186 CSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
++++.|.+|++|+-. .....+...+.+|...|.+++|++ .|..|++++.|++++||-..+ .-+ ..|..
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~------~~~----~~~sr 234 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT------DLS----GMHSR 234 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc------Ccc----hhccc
Confidence 999999999999887 566678889999999999999999 999999999999999998664 111 22778
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee-eeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
.++.++|. ++ ++|+++.|+.|++|.-....... ...++ ..-..|+..|+++.|+|..+.+++
T Consensus 235 ~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p---------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~----- 297 (312)
T KOG0645|consen 235 ALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP---------SWNLLAKKEGAHEVDVNSVQWNPKVSNRLA----- 297 (312)
T ss_pred ceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc---------hHHHHHhhhcccccccceEEEcCCCCCcee-----
Confidence 89999998 55 68999999999999876421110 01112 234568999999999997555666
Q ss_pred CCCCCCCceEEEEecC
Q 016547 344 CDSTGGGGTLQIWRMS 359 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~ 359 (387)
+||.||.|++|.+.
T Consensus 298 --s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 --SGGDDGIVNFWELE 311 (312)
T ss_pred --ecCCCceEEEEEec
Confidence 55666999999875
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=262.84 Aligned_cols=333 Identities=17% Similarity=0.255 Sum_probs=261.4
Q ss_pred cCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 18 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
..|+....+..+|-..|.++.|+. +.++|++|+.|-++++|+++..+. -....+.+|.+ .|-++.|..
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~----------~~~~~l~gHkd-~VvacfF~~ 199 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKN----------LFTYALNGHKD-YVVACFFGA 199 (893)
T ss_pred cCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEeccccc----------cceEeccCCCc-ceEEEEecc
Confidence 466777788889999999999999 999999999999999999998732 23567899998 677889999
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCcccc--------------CCCcc-------------cCC---------CCCCceec
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSAT--------------DPATA-------------KSA---------GSSGSIIK 141 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~--------------~~~~~-------------~~~---------~~~~~~~~ 141 (387)
+...+++.+.||.+.+|........... ..... ... ........
T Consensus 200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~ 279 (893)
T KOG0291|consen 200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNL 279 (893)
T ss_pred CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceE
Confidence 9999999999999999988732100000 00000 000 00011111
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-CCCeEEEEEccCCCCceeEEeeccCCCeeEE
Q 016547 142 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCV 220 (387)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~ 220 (387)
...+...+...++..+....+..+.-...+|..+.|+..| ..++.|+ .-|.+.+|+..+.. .+...++|...++++
T Consensus 280 lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l 356 (893)
T KOG0291|consen 280 LVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSL 356 (893)
T ss_pred EEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc--eeeeccccccceeeE
Confidence 2223345555677788888888888878899999999998 5676665 45899999998877 567778999999999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee
Q 016547 221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 300 (387)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 300 (387)
+++| +|+++++|+.||.|++||... +-|+.+|..|...|+.+.|+..|+.+ .+.+.||+|+.||+.......
T Consensus 357 ~YSp-Dgq~iaTG~eDgKVKvWn~~S------gfC~vTFteHts~Vt~v~f~~~g~~l-lssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 357 AYSP-DGQLIATGAEDGKVKVWNTQS------GFCFVTFTEHTSGVTAVQFTARGNVL-LSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred EECC-CCcEEEeccCCCcEEEEeccC------ceEEEEeccCCCceEEEEEEecCCEE-EEeecCCeEEeeeecccceee
Confidence 9999 999999999999999999999 99999999999999999999999964 599999999999998866554
Q ss_pred ccCCCCC-----------------------------CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547 301 EQGPRTT-----------------------------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 351 (387)
Q Consensus 301 ~~~~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg 351 (387)
+...+.+ ....+++..+.||+++|.+++|+|.+..|+ +|+.|.
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La--------S~SWDk 500 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA--------SGSWDK 500 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE--------eccccc
Confidence 4433221 134456778899999999999999999777 888999
Q ss_pred eEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 352 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 352 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+||+||+-. +.....+++ +...|.+++|+|
T Consensus 501 TVRiW~if~-----s~~~vEtl~-i~sdvl~vsfrP 530 (893)
T KOG0291|consen 501 TVRIWDIFS-----SSGTVETLE-IRSDVLAVSFRP 530 (893)
T ss_pred eEEEEEeec-----cCceeeeEe-eccceeEEEEcC
Confidence 999999984 233444444 778899999988
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=246.58 Aligned_cols=248 Identities=21% Similarity=0.370 Sum_probs=223.4
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.||.+.|..|+|.. .|++||+++.|-.+++||.++.. +++..+.+|.. .|.+++|-|.|.++++
T Consensus 144 ~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~-----------~c~ks~~gh~h-~vS~V~f~P~gd~ilS 210 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFF-----------RCIKSLIGHEH-GVSSVFFLPLGDHILS 210 (406)
T ss_pred hhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHH-----------HHHHHhcCccc-ceeeEEEEecCCeeee
Confidence 45568999999999998 88999999999999999998742 56777888887 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|.+|+.|++.++-+ +.++.+|...|..++.+.|| .+
T Consensus 211 ~srD~tik~We~~tg~c----------------------------------------v~t~~~h~ewvr~v~v~~DG-ti 249 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYC----------------------------------------VKTFPGHSEWVRMVRVNQDG-TI 249 (406)
T ss_pred cccccceeEEeccccee----------------------------------------EEeccCchHhEEEEEecCCe-eE
Confidence 99999999999987543 47788999999999999999 99
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--------------CCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------------DDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
+++++.|.++++|-+.+++ +...+..|+.+|.+++|.|. .+.++++++.|++|++||+.+
T Consensus 250 ~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t---- 323 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST---- 323 (406)
T ss_pred EEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC----
Confidence 9999999999999999887 56677889999999999763 236999999999999999999
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
+.++.++.+|...|..++|+|.|+|| +++.+|+++++||++.. ++...+..|+.-|++++|+
T Consensus 324 --g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~~---------------~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 324 --GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKNL---------------QCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred --CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEeccc---------------eeeeccCCCcceeEEEecC
Confidence 99999999999999999999999985 59999999999999986 5677788999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
.+.++++ ||+-|.++++|.-
T Consensus 386 ~~~p~Vv--------TGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVV--------TGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEE--------eccccceeeeeec
Confidence 9999888 9999999999974
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.2e-39 Score=248.35 Aligned_cols=259 Identities=20% Similarity=0.385 Sum_probs=221.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
....|.|+.| +...+++|..|++|+|||..+. .+...+.||++ .|.|+.| +.+.+++|+.|.
T Consensus 196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtG-SVLCLqy--d~rviisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTG-SVLCLQY--DERVIVSGSSDS 257 (499)
T ss_pred cCCceEEEEe---cchhhhcccccCceEEeccccH------------HHHHhhhcCCC-cEEeeec--cceEEEecCCCc
Confidence 4578999998 5567999999999999999988 78889999998 5889988 567999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+|++||++++ +++.++.+|.+.|..+.|+. .++++++
T Consensus 258 TvrvWDv~tg----------------------------------------e~l~tlihHceaVLhlrf~n---g~mvtcS 294 (499)
T KOG0281|consen 258 TVRVWDVNTG----------------------------------------EPLNTLIHHCEAVLHLRFSN---GYMVTCS 294 (499)
T ss_pred eEEEEeccCC----------------------------------------chhhHHhhhcceeEEEEEeC---CEEEEec
Confidence 9999999864 45678889999999999973 5799999
Q ss_pred CCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 190 DDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
.|.++.+||+..... .+...+.+|...|+.+.|+. +++++++.|.+|++|++.+ ++.++++.+|...|-|
T Consensus 295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIAC 365 (499)
T ss_pred CCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccc------eeeehhhhccccccee
Confidence 999999999987552 23456779999999999954 6999999999999999999 9999999999999999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
+.+. ++ ++++|+.|.+|++||+..+ .++..+.||+.-|.++.|. .+.++ +|+
T Consensus 366 lQYr--~r-lvVSGSSDntIRlwdi~~G---------------~cLRvLeGHEeLvRciRFd--~krIV--------SGa 417 (499)
T KOG0281|consen 366 LQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCIRFD--NKRIV--------SGA 417 (499)
T ss_pred hhcc--Ce-EEEecCCCceEEEEecccc---------------HHHHHHhchHHhhhheeec--Cceee--------ecc
Confidence 9874 55 6789999999999999986 5677889999999999996 45676 888
Q ss_pred CCceEEEEecCCCc---ccccchhhhhhhccCceEEEeeec
Q 016547 349 GGGTLQIWRMSDLI---YRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 349 ~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
.||+|+|||+.... .....-++.++..|.+.|..+.|-
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 99999999998532 122334788889999999999883
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-37 Score=258.18 Aligned_cols=266 Identities=20% Similarity=0.309 Sum_probs=236.5
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
..|...|.++.++| ...+++++-.+|.|.|||.++. ..+..+....- +|.+..|-+..+.+++|+.
T Consensus 10 ~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetq------------tmVksfeV~~~-PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQ------------TMVKSFEVSEV-PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred hccCCceeeeecCC-CCceEEEeeecCeeEEEecccc------------eeeeeeeeccc-chhhheeeeccceEEEecC
Confidence 34899999999999 8889999999999999999998 66667766665 7899999999999999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
|..|+||+.++. +.+..+..|.+-|.+++.+|.. -++++
T Consensus 76 D~~IrVfnynt~----------------------------------------ekV~~FeAH~DyIR~iavHPt~-P~vLt 114 (794)
T KOG0276|consen 76 DMQIRVFNYNTG----------------------------------------EKVKTFEAHSDYIRSIAVHPTL-PYVLT 114 (794)
T ss_pred CceEEEEecccc----------------------------------------eeeEEeeccccceeeeeecCCC-CeEEe
Confidence 999999999864 3447889999999999999998 68999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 267 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 267 (387)
++.|-.|++||-+.+ ..+...+.+|..-|.+++|+|.+.+.+++++.|++|++|.+.. ..+..++++|+..|+
T Consensus 115 sSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN 187 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVN 187 (794)
T ss_pred cCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcc
Confidence 999999999998754 3578889999999999999999999999999999999999998 889999999999999
Q ss_pred EEEEcCCC--CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 268 CVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 268 ~~~~~~~~--~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|+.+-+-| ++ +++|++|..|+|||..+. .++.++.||...|..+.|+|.-+.++
T Consensus 188 ~Vdyy~~gdkpy-lIsgaDD~tiKvWDyQtk---------------~CV~TLeGHt~Nvs~v~fhp~lpiii-------- 243 (794)
T KOG0276|consen 188 CVDYYTGGDKPY-LISGADDLTIKVWDYQTK---------------SCVQTLEGHTNNVSFVFFHPELPIII-------- 243 (794)
T ss_pred eEEeccCCCcce-EEecCCCceEEEeecchH---------------HHHHHhhcccccceEEEecCCCcEEE--------
Confidence 99998754 56 469999999999999985 57888999999999999999999877
Q ss_pred CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
||+.||++|||+-. +-++..++.-.-+.|++++-
T Consensus 244 sgsEDGTvriWhs~------Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSK------TYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred EecCCccEEEecCc------ceehhhhhhcCCceEEEEee
Confidence 88999999999988 67777777766777887764
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=242.04 Aligned_cols=309 Identities=17% Similarity=0.258 Sum_probs=249.3
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+..|++.|.+++.+| +.+++|||+.|..-.+|+..++ .....+.+|.+ .|+++.|+.+|.+||
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKD-SVt~~~FshdgtlLA 122 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKD-SVTCCSFSHDGTLLA 122 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCC------------cceeEecCCCC-ceEEEEEccCceEEE
Confidence 456678999999999999 9999999999999999999999 67788999999 589999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCC--CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
||+-+|.|+||+..++........ .......-.........+..++.+..|..+.....+.+.+|..++++=.|.|+|
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence 999999999999998865544431 111111111122233345567888888888888889999999999999999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 260 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~- 260 (387)
+.++++..||+|++||+.+++. ....-.......+++.++. .+..++.|+.++.+++-+..+ ++.+....
T Consensus 203 -Kr~~tgy~dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~s------gKVv~~~n~ 273 (399)
T KOG0296|consen 203 -KRILTGYDDGTIIVWNPKTGQP-LHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGS------GKVVNCNNG 273 (399)
T ss_pred -ceEEEEecCceEEEEecCCCce-eEEecccccCcCCcccccc-ccceeEeccCCccEEEEcccc------ceEEEecCC
Confidence 8899999999999999999973 2222223345678888888 899999999999999988777 66555554
Q ss_pred -------cccceEEEEEEcC---CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 261 -------GHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 261 -------~~~~~i~~~~~~~---~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
.++..+.++.+.| .-+ |+|+|+-||+|.|||+... .++....|..+|+.+.|-
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~----------------~~R~~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS----------------TLRHICEHEDGVTKLKWL 336 (399)
T ss_pred CCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEecccc----------------hhheeccCCCceEEEEEc
Confidence 3455555665555 444 6899999999999999874 234446789999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+ ..+|+ ++..||.|+.||.+ +|+++.++.||..+|.+++.+|
T Consensus 337 ~-t~~l~--------t~c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 337 N-TDYLL--------TACANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred C-cchhe--------eeccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence 9 67888 77778999999999 8999999999999999999887
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-37 Score=258.23 Aligned_cols=264 Identities=17% Similarity=0.328 Sum_probs=214.6
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
++..+|...++|++|+| +|+++|||+.||.|+|||...+ -+..++..|+. .|+.+.|+..|+.+++
T Consensus 344 lKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts-~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTS-GVTAVQFTARGNVLLS 409 (893)
T ss_pred eeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCC-ceEEEEEEecCCEEEE
Confidence 44568999999999999 9999999999999999999998 79999999998 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++-||+|+.||+........+.. .......|++..|.| .+
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~---------------------------------------P~p~QfscvavD~sG-el 449 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTS---------------------------------------PEPIQFSCVAVDPSG-EL 449 (893)
T ss_pred eecCCeEEeeeecccceeeeecC---------------------------------------CCceeeeEEEEcCCC-CE
Confidence 99999999999986544322211 122356788999988 67
Q ss_pred EEEecCCC-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 185 FCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 185 l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
+..|+.|. .|++|++++++ .+..+.+|+++|.+++|+| .++.|+++|.|.+|++||+-.. ...+.+++ +.
T Consensus 450 V~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s-----~~~vEtl~-i~ 520 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSS-----SGTVETLE-IR 520 (893)
T ss_pred EEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeecc-----CceeeeEe-ec
Confidence 77777765 49999999999 7888999999999999999 9999999999999999999862 23444554 67
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC-----CCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-----YPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
..+..++|+|+|+. +|++.-||.|.+||.....+.......... ................+.+++++||..++
T Consensus 521 sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il- 598 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL- 598 (893)
T ss_pred cceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE-
Confidence 78999999999997 578889999999999875544322221111 11122222334456899999999999999
Q ss_pred EecCCCCCCCCCceEEEEecCC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+||..+.|+||++.+
T Consensus 599 -------AgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 599 -------AGGESNSICIYDVPE 613 (893)
T ss_pred -------ecCCcccEEEEECch
Confidence 888999999999983
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.2e-36 Score=250.18 Aligned_cols=267 Identities=25% Similarity=0.461 Sum_probs=227.2
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
+.+|.++|++++|+| ++++|++++.||.|++|++.+. .....+..|.. .+..+.|+|+++++++++
T Consensus 5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETG------------ELLRTLKGHTG-PVRDVAASADGTYLASGS 70 (289)
T ss_pred hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCC------------CcEEEEecCCc-ceeEEEECCCCCEEEEEc
Confidence 348999999999999 7899999999999999999987 56677788876 678999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.||.|++|++.+. +....+..|...+.++.|++++ .+++
T Consensus 71 ~~~~i~i~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~~~~~~-~~~~ 109 (289)
T cd00200 71 SDKTIRLWDLETG----------------------------------------ECVRTLTGHTSYVSSVAFSPDG-RILS 109 (289)
T ss_pred CCCeEEEEEcCcc----------------------------------------cceEEEeccCCcEEEEEEcCCC-CEEE
Confidence 9999999999753 1225566788899999999996 7888
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+++.++.|.+||+++.+ ....+..|...+.+++|+| ++.++++++.||.|++||++. .+.+..+..|...+
T Consensus 110 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i 180 (289)
T cd00200 110 SSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT------GKCVATLTGHTGEV 180 (289)
T ss_pred EecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc------cccceeEecCcccc
Confidence 88889999999998766 4566667889999999999 788888888899999999997 77888888898899
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.++.|+|+++.+ ++++.|+.|++||++.. .....+..|...+.++.|+|++.+++ +
T Consensus 181 ~~~~~~~~~~~l-~~~~~~~~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~~~--------~ 236 (289)
T cd00200 181 NSVAFSPDGEKL-LSSSSDGTIKLWDLSTG---------------KCLGTLRGHENGVNSVAFSPDGYLLA--------S 236 (289)
T ss_pred ceEEECCCcCEE-EEecCCCcEEEEECCCC---------------ceecchhhcCCceEEEEEcCCCcEEE--------E
Confidence 999999999865 46777999999999874 23444557888999999999965554 4
Q ss_pred CCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 347 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 347 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
++.||.|++|++. .++++..+..|...|.+++|+|
T Consensus 237 ~~~~~~i~i~~~~------~~~~~~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 237 GSEDGTIRVWDLR------TGECVQTLSGHTNSVTSLAWSP 271 (289)
T ss_pred EcCCCcEEEEEcC------CceeEEEccccCCcEEEEEECC
Confidence 4456999999999 6778888889999999999986
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=261.12 Aligned_cols=272 Identities=20% Similarity=0.360 Sum_probs=237.1
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-+..|..++|+| ...+++++--+|.|++||.+-+ ..+..+..|.+ +|..++|+|++.++++|+.|.
T Consensus 8 kSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdG-pVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 8 KSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDG-PVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred ccccccceecCC-CCCEEEEeecCceeeeehhhhh------------hHHhhhhccCC-ccceeeecCCCCeEEecCCcc
Confidence 467899999999 8889999999999999999988 78888999998 899999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|++|+..+.+ ++.++.+|.+-|..+.|++.. -+++++|
T Consensus 74 kIkVWnYk~rr----------------------------------------clftL~GHlDYVRt~~FHhey-PWIlSAS 112 (1202)
T KOG0292|consen 74 KIKVWNYKTRR----------------------------------------CLFTLLGHLDYVRTVFFHHEY-PWILSAS 112 (1202)
T ss_pred EEEEEecccce----------------------------------------ehhhhccccceeEEeeccCCC-ceEEEcc
Confidence 99999998643 447788999999999999998 6899999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC----C--------------
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN----G-------------- 251 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~-------------- 251 (387)
.|.+|+||+..+.+ ++..+.+|...|.|.+|+| ...+++++|.|.+||+||+...... .
T Consensus 113 DDQTIrIWNwqsr~--~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d 189 (1202)
T KOG0292|consen 113 DDQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD 189 (1202)
T ss_pred CCCeEEEEeccCCc--eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence 99999999999988 7889999999999999999 9999999999999999998653210 0
Q ss_pred -C----CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 252 -V----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 252 -~----~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
. ....+.+++|+..|+-++|+|.-+ ++++|++|..|++|.+...+.- .+.+..+|...|++
T Consensus 190 Lfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaW-------------EvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 190 LFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW-------------EVDTCRGHYNNVSS 255 (1202)
T ss_pred hcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccce-------------eehhhhcccCCcce
Confidence 0 112245689999999999999998 6789999999999999874221 24556899999999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+-|+|..+.++ +.|.|++|+|||+. ..+.+++++...+.-+.++-+|
T Consensus 256 vlfhp~q~lIl--------SnsEDksirVwDm~------kRt~v~tfrrendRFW~laahP 302 (1202)
T KOG0292|consen 256 VLFHPHQDLIL--------SNSEDKSIRVWDMT------KRTSVQTFRRENDRFWILAAHP 302 (1202)
T ss_pred EEecCccceeE--------ecCCCccEEEEecc------cccceeeeeccCCeEEEEEecC
Confidence 99999888777 77888999999999 7888999988888888888877
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.1e-38 Score=241.93 Aligned_cols=251 Identities=22% Similarity=0.459 Sum_probs=210.8
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+.||+|.|.|+.| +.+++++|++|.+|+|||++++ +++.++-+|.+ .|..+.|+ +.++
T Consensus 229 c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tg------------e~l~tlihHce-aVLhlrf~--ng~m 290 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTG------------EPLNTLIHHCE-AVLHLRFS--NGYM 290 (499)
T ss_pred HHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCC------------chhhHHhhhcc-eeEEEEEe--CCEE
Confidence 34567799999999998 4579999999999999999999 78888889988 68899995 5799
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|.++.+||+..+. .......+.+|...|+.+.|..
T Consensus 291 vtcSkDrsiaVWdm~sps-------------------------------------~it~rrVLvGHrAaVNvVdfd~--- 330 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPT-------------------------------------DITLRRVLVGHRAAVNVVDFDD--- 330 (499)
T ss_pred EEecCCceeEEEeccCch-------------------------------------HHHHHHHHhhhhhheeeecccc---
Confidence 999999999999997542 1223467789999999999963
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
+++++++.|.+|++|++.+.+ .++.+.+|...|-|+++ .++++++|+.|.+|++||+.. +.+++.+++|
T Consensus 331 kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------G~cLRvLeGH 399 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------GACLRVLEGH 399 (499)
T ss_pred ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------cHHHHHHhch
Confidence 589999999999999999998 78999999999999988 679999999999999999999 9999999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
+.-|.++.|... . +++|+.||+|+|||+.....+... ...-++..+..|.+.|..+.|.. +-++
T Consensus 400 EeLvRciRFd~k--r-IVSGaYDGkikvWdl~aaldpra~------~~~~Cl~~lv~hsgRVFrLQFD~---fqIv---- 463 (499)
T KOG0281|consen 400 EELVRCIRFDNK--R-IVSGAYDGKIKVWDLQAALDPRAP------ASTLCLRTLVEHSGRVFRLQFDE---FQII---- 463 (499)
T ss_pred HHhhhheeecCc--e-eeeccccceEEEEecccccCCccc------ccchHHHhhhhccceeEEEeecc---eEEE----
Confidence 999999999644 3 569999999999999875443211 11235666778999999999953 3455
Q ss_pred CCCCCCCCceEEEEecCCC
Q 016547 343 DCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~ 361 (387)
+++.|.+|.|||+.+.
T Consensus 464 ---sssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 464 ---SSSHDDTILIWDFLNG 479 (499)
T ss_pred ---eccCCCeEEEEEcCCC
Confidence 4555699999999853
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.7e-36 Score=233.78 Aligned_cols=280 Identities=21% Similarity=0.417 Sum_probs=221.4
Q ss_pred eeeeecCCCcEEEEEecCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 24 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.++..||.++|.+++|...+ ...+++++.|.++++|.++.++... +......||.. .|-++...++|..
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~--------~~~~~~~GHk~-~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV--------KALKVCRGHKR-SVDSVSVDSSGTR 207 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh--------hHHhHhccccc-ceeEEEecCCCCe
Confidence 45677999999988876533 2369999999999999998875433 33444559998 6899999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++|+.|.+|.+|+....... ..... ..................++..+.+|.++|.++.|++.
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~-~~E~~--------------s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~- 271 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEED-ELESS--------------SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA- 271 (423)
T ss_pred EEeecccceeeecccCCCccc-ccccc--------------chhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-
Confidence 999999999999994321110 00000 00111111122233455678889999999999999984
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
..+.+++.|.+|+.||+.++. ....+ .....++++.++| ..++|++|+.|..|++||.|+... ....+++.+
T Consensus 272 -~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g---s~v~~s~~g 343 (423)
T KOG0313|consen 272 -TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG---SVVSQSLIG 343 (423)
T ss_pred -CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC---ceeEEeeec
Confidence 579999999999999999988 33333 3467899999999 999999999999999999998642 445678899
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
|...|.++.|+|...++|++++.|+++++||++.... .++.+.+|...|.++.|+. +..++
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--------------plydI~~h~DKvl~vdW~~-~~~Iv---- 404 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--------------PLYDIAGHNDKVLSVDWNE-GGLIV---- 404 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--------------cceeeccCCceEEEEeccC-CceEE----
Confidence 9999999999999999999999999999999998632 4778899999999999986 44566
Q ss_pred CCCCCCCCCceEEEEecC
Q 016547 342 DDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~ 359 (387)
+||.|++|+|+.-.
T Consensus 405 ----SGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 405 ----SGGADNKLRIFKGS 418 (423)
T ss_pred ----eccCcceEEEeccc
Confidence 99999999999865
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-35 Score=232.45 Aligned_cols=275 Identities=20% Similarity=0.374 Sum_probs=228.3
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC---C
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---P 100 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~---~ 100 (387)
...-+.|.+-|.++.-. ++.++||+.||.+++||.... ....+.||.+ +|.+++|.-.+ .
T Consensus 98 pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk-------------~~~~~~Ght~-~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGK-------------SIKTIVGHTG-PIKSVAWVIKNSSSC 160 (423)
T ss_pred ccccccchhhhhhhccc---CceEEEeecCCeeEEEecCCc-------------eEEEEecCCc-ceeeeEEEecCCccc
Confidence 44556788888888764 579999999999999998764 7788999998 78888875433 3
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.+++++.|.++++|.++.+.... +.+..-.+|...|.++...++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~------------------------------------~~~~~~~GHk~~V~sVsv~~s 204 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKV------------------------------------KALKVCRGHKRSVDSVSVDSS 204 (423)
T ss_pred eEEEecCCceEEEEEecCchhhh------------------------------------hHHhHhcccccceeEEEecCC
Confidence 59999999999999998653321 222334599999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCC-----------------------CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 181 SAQEFCSVGDDSCLILWDARVG-----------------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
+ ..+++|+.|.+|.+|+..+. ....+..+.+|..+|.++.|++ ...+.+++.|.
T Consensus 205 g-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDH 281 (423)
T KOG0313|consen 205 G-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDH 281 (423)
T ss_pred C-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccc
Confidence 9 88999999999999993221 1124556789999999999997 77899999999
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
+|+.||+.+ +..+.++.+ ...++++..+|... |+++|+.|..|++||.+.+... -...++
T Consensus 282 TIk~WDlet------g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs------------~v~~s~ 341 (423)
T KOG0313|consen 282 TIKVWDLET------GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGS------------VVSQSL 341 (423)
T ss_pred eEEEEEeec------ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCc------------eeEEee
Confidence 999999999 888888774 67799999999887 6789999999999999987443 346778
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
.+|...|.++.|+|.+.++++++|.| |++++||++. ...++..+.+|.+.|.+++|.
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D-------~t~klWDvRS-----~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYD-------NTVKLWDVRS-----TKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecC-------CeEEEEEecc-----CCCcceeeccCCceEEEEecc
Confidence 99999999999999999999966555 9999999994 344999999999999999885
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-36 Score=252.18 Aligned_cols=259 Identities=20% Similarity=0.343 Sum_probs=220.7
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS 104 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s 104 (387)
...||...|.++.... .+.+|+||+.|.++++|.++.+.. ...++....+|+. .|.+++++..+ .+|++
T Consensus 360 ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~--------~~~~~a~~~gH~~-svgava~~~~~asffvs 429 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCS--------KSLCVAQANGHTN-SVGAVAGSKLGASFFVS 429 (775)
T ss_pred EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcc--------hhhhhhhhccccc-ccceeeecccCccEEEE
Confidence 5668999999999555 668999999999999998854421 1246677889998 68999997754 58999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
+|.|+++++|++........ ............|...|++++++|++ .+
T Consensus 430 vS~D~tlK~W~l~~s~~~~~-------------------------------~~~~~~~~t~~aHdKdIN~Vaia~nd-kL 477 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAF-------------------------------PIVLTCRYTERAHDKDINCVAIAPND-KL 477 (775)
T ss_pred ecCCceEEEecCCCcccccc-------------------------------cceehhhHHHHhhcccccceEecCCC-ce
Confidence 99999999999976211110 01112223456799999999999998 89
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
++||+.|.+.++|++.... ....+.+|...|.++.|+| ..+.++++|.|.+|+||.+.+ ..++.++.+|..
T Consensus 478 iAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~~ 548 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHTS 548 (775)
T ss_pred EEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc------ceeeeeecCccc
Confidence 9999999999999999555 7889999999999999999 899999999999999999999 999999999999
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
.|..+.|-.++..+ ++++.||.|++|++.+. .+..++.+|++.|++++-+|...+++
T Consensus 549 aVlra~F~~~~~ql-iS~~adGliKlWnikt~---------------eC~~tlD~H~DrvWaL~~~~~~~~~~------- 605 (775)
T KOG0319|consen 549 AVLRASFIRNGKQL-ISAGADGLIKLWNIKTN---------------ECEMTLDAHNDRVWALSVSPLLDMFV------- 605 (775)
T ss_pred eeEeeeeeeCCcEE-EeccCCCcEEEEeccch---------------hhhhhhhhccceeEEEeecCccceeE-------
Confidence 99999999999975 59999999999999986 56788899999999999999999776
Q ss_pred CCCCCCceEEEEecC
Q 016547 345 DSTGGGGTLQIWRMS 359 (387)
Q Consensus 345 ~tg~~dg~i~iw~~~ 359 (387)
|||.||.|.+|.=.
T Consensus 606 -tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 606 -TGGGDGRIIFWKDV 619 (775)
T ss_pred -ecCCCeEEEEeecC
Confidence 89999999999754
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-34 Score=270.30 Aligned_cols=287 Identities=19% Similarity=0.233 Sum_probs=217.2
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEe
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSG 105 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~ 105 (387)
...|.+.|.+++|+| ++++||+|+.|+.|+|||+........ ....+...+.++. .|.+++|++ ++.+|+++
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~--~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVELASRS--KLSGICWNSYIKSQVASS 551 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEecccC--ceeeEEeccCCCCEEEEE
Confidence 345999999999999 889999999999999999865311100 0112333444443 588999987 47899999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.||+|++||+.++. .+..+.+|...|++++|+|.++.+|
T Consensus 552 ~~Dg~v~lWd~~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 552 NFEGVVQVWDVARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eCCCeEEEEECCCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEE
Confidence 999999999997532 2356678999999999997444889
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++|+.||.|++||++++. ....+.. ...+.++.|++.++.+|++|+.||.|++||++.. ..++..+.+|...
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~ 663 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV--SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKT 663 (793)
T ss_pred EEEcCCCEEEEEECCCCc--EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCC
Confidence 999999999999998876 4445543 4679999996547999999999999999999872 2356778899999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|.++.|. ++.+ +++++.|+.|++||++..... .....+..+.+|...+..++|+|++.+++
T Consensus 664 V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~---------~~~~~l~~~~gh~~~i~~v~~s~~~~~la-------- 724 (793)
T PLN00181 664 VSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISG---------INETPLHSFMGHTNVKNFVGLSVSDGYIA-------- 724 (793)
T ss_pred EEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccc---------cCCcceEEEcCCCCCeeEEEEcCCCCEEE--------
Confidence 9999997 5564 679999999999999853211 01134667889999999999999998777
Q ss_pred CCCCCceEEEEecCCCccc-----ccchhh--hhhhccCceEEEeeecC
Q 016547 346 STGGGGTLQIWRMSDLIYR-----PQDEVL--AELEKFKAHVISCTSKP 387 (387)
Q Consensus 346 tg~~dg~i~iw~~~~~~~~-----~~~~~~--~~~~~~~~~v~~~~f~P 387 (387)
+|+.|+.|++|+....... .....+ .....|...|.+++|+|
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 7778899999997632100 000011 12244667899999986
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=235.21 Aligned_cols=278 Identities=19% Similarity=0.313 Sum_probs=223.0
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 98 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~ 98 (387)
.|......+..|.++|+-+.|++ +|++||+++.|.+..||++..... .+...++.+|.. +|.-+.||||
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~---------~kl~~tlvgh~~-~V~yi~wSPD 280 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVH---------FKLKKTLVGHSQ-PVSYIMWSPD 280 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcc---------eeeeeeeecccC-ceEEEEECCC
Confidence 33444455567999999999999 999999999999999999876621 256788999998 7999999999
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
.++|++|+.|..+.+||+.++.....+. .++...+.+++|.
T Consensus 281 dryLlaCg~~e~~~lwDv~tgd~~~~y~---------------------------------------~~~~~S~~sc~W~ 321 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDTGDLRHLYP---------------------------------------SGLGFSVSSCAWC 321 (519)
T ss_pred CCeEEecCchHheeeccCCcchhhhhcc---------------------------------------cCcCCCcceeEEc
Confidence 9999999999999999998765432221 1245778999999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
||+ ..+++|+.|+.+..||++... .....+ ....|.+++..+ +|.++++.+.|..|++|+..+ .....
T Consensus 322 pDg-~~~V~Gs~dr~i~~wdlDgn~---~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~ 390 (519)
T KOG0293|consen 322 PDG-FRFVTGSPDRTIIMWDLDGNI---LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRG 390 (519)
T ss_pred cCC-ceeEecCCCCcEEEecCCcch---hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhc
Confidence 999 889999999999999998655 222222 235689999999 999999999999999999987 33333
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC--eeEEEEccCCCe
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK--VVDFHWNASDPW 335 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~ 335 (387)
.+. .+.+|+++..|.++++.| +.-.+..+++||+... .++..+.||... +..-+|.-.+..
T Consensus 391 lis-e~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~---------------~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 391 LIS-EEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEEN---------------KLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccc-ccCceeEEEEcCCCcEEE-EEcccCeeEEeecchh---------------hHHHHhhcccccceEEEeccCCCCcc
Confidence 333 457899999999999765 5566889999999964 345566777653 444456655545
Q ss_pred EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++ +|+.|+.|+||+.. +++++.++.||...|++|+++|
T Consensus 454 fia-------SGSED~kvyIWhr~------sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 454 FIA-------SGSEDSKVYIWHRI------SGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred eEE-------ecCCCceEEEEEcc------CCceeEeecCCcceeeEEecCC
Confidence 555 77777999999999 8999999999999999999998
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-34 Score=232.76 Aligned_cols=283 Identities=17% Similarity=0.285 Sum_probs=227.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
...-+|..+++-.+|+| .|.++|+|...|.|+|||....+. -...+++.-.+ +|..|+|+.++++|+.
T Consensus 53 ~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~h----------iLKnef~v~aG-~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEH----------ILKNEFQVLAG-PIKDISWDFDSKRIAA 120 (603)
T ss_pred eeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcce----------eeeeeeeeccc-ccccceeCCCCcEEEE
Confidence 34557999999999999 799999999999999999877522 22334555555 7999999999999987
Q ss_pred ecCC----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 105 GGKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 105 ~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.++. |.+.+||.-+ ....+.+|...|+++.|-|.
T Consensus 121 vGEGrerfg~~F~~DSG~------------------------------------------SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDSGN------------------------------------------SVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EecCccceeEEEEecCCC------------------------------------------ccceeeccceeEeeeeccCC
Confidence 7642 3566777543 23567899999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
.+..+++|+.|+.|.+|+=.-.+ ....+..|..-|+++.|+| ++.++++.+.||.|.+||-.+ ++.+.++.
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt------ge~vg~l~ 229 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT------GEKVGELE 229 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC------ccEEEEec
Confidence 99999999999999999754444 4556778999999999999 999999999999999999999 99999998
Q ss_pred ---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC----------------------------CC
Q 016547 261 ---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----------------------------NY 309 (387)
Q Consensus 261 ---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------------------------~~ 309 (387)
+|.+.|.+++|+||+.. |++++.|.+++|||+.......+...... ..
T Consensus 230 ~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS 308 (603)
T ss_pred CCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence 89999999999999997 56999999999999988543322211110 01
Q ss_pred CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh-hccCceEEEeee
Q 016547 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTS 385 (387)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~f 385 (387)
.......+.+|...|++++.+|++.+++ +|+.||.|.-|+.. ++..-+.. ++|...|.+++.
T Consensus 309 d~~~~~~i~GHnK~ITaLtv~~d~~~i~--------SgsyDG~I~~W~~~------~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 309 DPSVLKVISGHNKSITALTVSPDGKTIY--------SGSYDGHINSWDSG------SGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred CCChhheecccccceeEEEEcCCCCEEE--------eeccCceEEEEecC------CccccccccccccceEEEEee
Confidence 2224567789999999999999999988 89999999999999 55544433 567777777764
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.2e-35 Score=220.99 Aligned_cols=247 Identities=21% Similarity=0.381 Sum_probs=208.2
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLS 104 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s 104 (387)
...+|.+.|..+.|.+ +++.|++++.|.+|+.||++++ +..+.+++|.+ .|+++.-+.-|. ++.+
T Consensus 85 ~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG------------~~~rk~k~h~~-~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETG------------KRIRKHKGHTS-FVNSLDPSRRGPQLVCS 150 (338)
T ss_pred eeccccceeEeeeecc-CCCEEEEecCCceEEEEecccc------------eeeehhccccc-eeeecCccccCCeEEEe
Confidence 3449999999999999 9999999999999999999999 78889999998 788988665565 4568
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.||++++||+++...... + ..+-+++++.|..++ ..
T Consensus 151 gsdD~t~kl~D~R~k~~~~t----------------------------------------~-~~kyqltAv~f~d~s-~q 188 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKT----------------------------------------F-ENKYQLTAVGFKDTS-DQ 188 (338)
T ss_pred cCCCceEEEEeecccchhhc----------------------------------------c-ccceeEEEEEecccc-cc
Confidence 89999999999986533221 1 224578999999888 67
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~- 263 (387)
+++|+-|+.|++||++... ....+.+|...|+.+..+| .+.++.+-+.|.++++||++..... .+++..+.+|.
T Consensus 189 v~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~h 263 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHIH 263 (338)
T ss_pred eeeccccCceeeeccccCc--ceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCC--CceEEEeecchh
Confidence 9999999999999999888 7888999999999999999 9999999999999999999964331 34477777654
Q ss_pred ---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 264 ---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 264 ---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
......+|+|++.. +.+|+.|..+++||.... .++..+.||.+.|+.++|+|..+.++
T Consensus 264 nfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp~e~iil--- 324 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHPTEPIIL--- 324 (338)
T ss_pred hhhhhcceeeccCCCCc-cccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecCCCcEEE---
Confidence 33567899999997 578999999999998874 56888999999999999999999877
Q ss_pred cCCCCCCCCCceEEEEe
Q 016547 341 SDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~ 357 (387)
+++.|.+|++=.
T Consensus 325 -----s~~sdk~i~lge 336 (338)
T KOG0265|consen 325 -----SCSSDKTIYLGE 336 (338)
T ss_pred -----EeccCceeEeec
Confidence 677778988633
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=231.57 Aligned_cols=281 Identities=15% Similarity=0.246 Sum_probs=237.0
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
+.....++..+.+.|..|+| ++++|++|+.||.|.+||..+++..+.+. .+....+-.+.+ +|.|+.|+.|...
T Consensus 204 l~r~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLk----YQAqd~fMMmd~-aVlci~FSRDsEM 277 (508)
T KOG0275|consen 204 LARSIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLK----YQAQDNFMMMDD-AVLCISFSRDSEM 277 (508)
T ss_pred hhhheecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhh----hhhhcceeeccc-ceEEEeecccHHH
Confidence 44556678899999999999 99999999999999999999996655432 123334555666 7999999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
|++|+.||.|++|.++++.+...++ +.|+..|+|+.|+.|+
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFd---------------------------------------rAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFD---------------------------------------RAHTKGVTCLSFSRDN 318 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhh---------------------------------------hhhccCeeEEEEccCc
Confidence 9999999999999999876653322 3799999999999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
..+++++.|.++++.-+++++ +++.+.+|.+.|+...|.+ +|..+++++.||+|++|+..+ ..++.+++.
T Consensus 319 -SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~ 388 (508)
T KOG0275|consen 319 -SQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT------TECLSTFKP 388 (508)
T ss_pred -chhhcccccceEEEeccccch--hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc------hhhhhhccC
Confidence 779999999999999999999 7889999999999999999 999999999999999999999 888888864
Q ss_pred --ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc---CCCCeeEEEEccCCCeE
Q 016547 262 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPWT 336 (387)
Q Consensus 262 --~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l 336 (387)
.+.+|+++-.-|.++.-++.+...+++.|-++.. +.+..+.. ..+...+...+|.|.++
T Consensus 389 ~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----------------QvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----------------QVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----------------eEEeeeccCCccCCceEEEEecCCCcEE
Confidence 4567889988888766677888899999999876 23333332 23456677899999998
Q ss_pred EEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 337 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 337 ~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
. +.|.|+.++-|.+. +|.+-.++..|...|..++-+|
T Consensus 453 Y--------cigED~vlYCF~~~------sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 453 Y--------CIGEDGVLYCFSVL------SGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred E--------EEccCcEEEEEEee------cCceeeeeecccccccccccCc
Confidence 8 77788999999999 8999999999999998888777
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=253.60 Aligned_cols=248 Identities=23% Similarity=0.477 Sum_probs=211.0
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEec-cCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
.+|...|++++|+| ++.++++|+.|++|+|||+ +.+ ..+.++.+|.. .|++++|+|+++++++|+
T Consensus 200 ~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~------------~~~~~l~gH~~-~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG------------RNLKTLKGHST-YVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred cccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC------------eEEEEecCCCC-ceEEEEecCCCCEEEEec
Confidence 68999999999999 8899999999999999999 444 67889999998 799999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.|++|++||++++ ++...+.+|.+.|++++|++++ ++++
T Consensus 266 ~D~tvriWd~~~~----------------------------------------~~~~~l~~hs~~is~~~f~~d~-~~l~ 304 (456)
T KOG0266|consen 266 DDGTVRIWDVRTG----------------------------------------ECVRKLKGHSDGISGLAFSPDG-NLLV 304 (456)
T ss_pred CCCcEEEEeccCC----------------------------------------eEEEeeeccCCceEEEEECCCC-CEEE
Confidence 9999999999853 3457889999999999999999 8899
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCC--CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++.|+.|++||+.++...+...+..+.. ++++++|+| ++.++++++.|+.+++||++. +..+..+.+|..
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~------~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRS------GKSVGTYTGHSN 377 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccC------CcceeeecccCC
Confidence 99999999999999887322234444444 499999999 999999999999999999998 888888888877
Q ss_pred e---EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC-CCCeeEEEEccCCCeEEEEe
Q 016547 265 A---VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 265 ~---i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~s~ 340 (387)
. +.+...++.+++ +.+|+.|+.|++||+... ..+..+.+| ...+..++|+|..++++ +.
T Consensus 378 ~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~~-s~ 440 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLIA-SS 440 (456)
T ss_pred cceeEecccccCCCCe-EEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCeee-ec
Confidence 4 445556778886 569999999999999974 235566788 88999999999877665 22
Q ss_pred cCCCCCCCCCceEEEEecC
Q 016547 341 SDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~ 359 (387)
+...|+.+++|..+
T Consensus 441 -----s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 441 -----SFEGDGLIRLWKYD 454 (456)
T ss_pred -----CcCCCceEEEecCC
Confidence 23378999999876
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-35 Score=222.05 Aligned_cols=300 Identities=13% Similarity=0.174 Sum_probs=230.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
+.+.||..+++.+.|+. +|++|.+++.|.+..||-..++ ..+-++.||++ .|+|++.+.+.+++++
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtG-avW~~Did~~s~~liT 69 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTG-AVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCc-eEEEEEecCCcceeee
Confidence 45669999999999999 9999999999999999998888 67889999998 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccC---CCCCCceeccCCCCC---CCCCCCCC-------CCCCCCceeecCCCCC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKS---AGSSGSIIKQSPKPG---DGNDKAAD-------GPSVGPRGIYNGHEDT 171 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~ 171 (387)
|+.|.++++||++++++...+....... ....+.+........ ...+.+.+ ....++...+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999998877766544331 122222222222211 12222222 2355667788888899
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
++.+-|.|-+ ..+++|..||.|..||+++++. .+.....|...|+.|++++ +..++++++.|.+-++||.++
T Consensus 150 it~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~t----- 221 (327)
T KOG0643|consen 150 ITSALWGPLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRT----- 221 (327)
T ss_pred eeeeeecccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecccCccceeeeccc-----
Confidence 9999999998 8899999999999999999863 4556678999999999999 999999999999999999999
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
...+.++. .+.+|++.+++|...+++..|+.+.. |.-=+.+.++-...+ .+. --.+.+....+|-++|++++|+
T Consensus 222 -l~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF-yh~--i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 222 -LEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF-YHL--IFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred -eeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhH-HHH--HHHHHhccccccccCcceeEEC
Confidence 77888887 57899999999988877655554432 111111111000000 000 0002345678999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
|+|.... +||.||.||+..+.
T Consensus 297 PdGksYs--------SGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKSYS--------SGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcccc--------cCCCCceEEEEEec
Confidence 9999877 99999999998776
No 49
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.5e-33 Score=244.60 Aligned_cols=288 Identities=18% Similarity=0.292 Sum_probs=209.9
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCC-CCCeEEEeccCCCceEEEEECC-CCCEEEEec
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN-SRPDLILTGHQDNAEFALAMCP-TEPYVLSGG 106 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~ 106 (387)
.|-..|+...+++ ++..+++++.+.....|+...+........... ......+.+|.+ .|++++|+| ++++|++|+
T Consensus 18 ~~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 18 RHFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred cceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEcCCCCCEEEEEe
Confidence 3445566666666 555567777777778887655422111110000 011235789987 799999999 889999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.|++|++||+.+..... ....++..+.+|...|.+++|+|++.++|+
T Consensus 96 ~DgtIkIWdi~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred CCCEEEEEecCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEE
Confidence 99999999997532110 012345678899999999999998757899
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce-
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA- 265 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~- 265 (387)
+++.|+.|++||+++++ ....+..|...|.+++|+| ++.+|++++.|+.|++||+++ ++.+.++.+|.+.
T Consensus 143 Sgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~ 213 (493)
T PTZ00421 143 SAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAK 213 (493)
T ss_pred EEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCc
Confidence 99999999999999877 5667788999999999999 999999999999999999998 8888888888765
Q ss_pred EEEEEEcCCCCeeEEEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEec
Q 016547 266 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
+..+.|.+++..++++| +.|+.|++||+++...+. .... .+...+....|++++..+++++.
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--------------~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--------------STVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--------------eEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 45678999887666544 358999999998754321 1112 22345666778999988874332
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f~P 387 (387)
.|+.|++||+. .++++..... +..++..++|.|
T Consensus 280 -------gDg~Iriwdl~------~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 280 -------GEGNIRCFELM------NERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred -------CCCeEEEEEee------CCceEEEeeccCCCCCcceEecc
Confidence 36999999999 5555544332 445677777765
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=232.81 Aligned_cols=266 Identities=18% Similarity=0.307 Sum_probs=222.3
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
...+.|.+++|+|..+.-+|+.+.- .+.||+..+. .....+.-..+ .|.+++|-.||++|+.|...
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~------------~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTR------------SVRKTFSRFKD-VVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred cccCcceeEecCCCCCCceEEeccc-EEEEEecchh------------hhhhhHHhhcc-ceeEEEeecCCeEEEccCCc
Confidence 3468899999999777667766554 6999998887 34444444444 58999999999999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.|+++|+.+. ..+..+.+|+.++..+.|+|+++.+|++|
T Consensus 90 G~V~vfD~k~r----------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~ 129 (487)
T KOG0310|consen 90 GHVKVFDMKSR----------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSG 129 (487)
T ss_pred CcEEEeccccH----------------------------------------HHHHHHhhccCceeEEEecccCCeEEEec
Confidence 99999996542 12366789999999999999998999999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
+.|+.+++||+.+.. ....+.+|+..|.|.+|+|.++.++++|+.||.|++||++.. ...+.++. |+.+|..
T Consensus 130 sDd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----~~~v~eln-hg~pVe~ 201 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----TSRVVELN-HGCPVES 201 (487)
T ss_pred CCCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-----CceeEEec-CCCceee
Confidence 999999999999887 466788999999999999977789999999999999999983 36777777 9999999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
+.+-|.|. ++|+++ ...++|||+..+++. +.....|...|+++.+..++..|+ +||
T Consensus 202 vl~lpsgs-~iasAg-Gn~vkVWDl~~G~ql--------------l~~~~~H~KtVTcL~l~s~~~rLl--------S~s 257 (487)
T KOG0310|consen 202 VLALPSGS-LIASAG-GNSVKVWDLTTGGQL--------------LTSMFNHNKTVTCLRLASDSTRLL--------SGS 257 (487)
T ss_pred EEEcCCCC-EEEEcC-CCeEEEEEecCCcee--------------hhhhhcccceEEEEEeecCCceEe--------ecc
Confidence 99999988 466776 567999999976543 334455999999999999999998 899
Q ss_pred CCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 349 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
-|+.|++||+. +-+.+..+. ..++|.+++.+|
T Consensus 258 LD~~VKVfd~t------~~Kvv~s~~-~~~pvLsiavs~ 289 (487)
T KOG0310|consen 258 LDRHVKVFDTT------NYKVVHSWK-YPGPVLSIAVSP 289 (487)
T ss_pred cccceEEEEcc------ceEEEEeee-cccceeeEEecC
Confidence 99999999988 566666665 678999998887
No 51
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-35 Score=228.58 Aligned_cols=286 Identities=19% Similarity=0.300 Sum_probs=224.9
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.+.||.+.|.|++=+|..-..+|+|+.||.|+|||+... .+...+..|.+ .|..|++.. ..++++
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G-~V~Gi~v~~--~~~~tv 125 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------ECIRTFKAHEG-LVRGICVTQ--TSFFTV 125 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------hhhheeecccC-ceeeEEecc--cceEEe
Confidence 346999999999999955588999999999999999998 78889999998 899999976 778999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|++|+.|.++........... ...+-+..-...........+.+|+.....|+..+.-..+.|.++.|+|....+|
T Consensus 126 gdDKtvK~wk~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGPPLHTILGKS--VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred cCCcceeeeeccCCcceeeeccc--cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 99999999998753100000000 0000000000111122344578899999999999988889999999999987889
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++|+.|+.|.+||+++... +.... ....-+.|+|+| ...-|++|+.|..++.||++.. ..++...++|.+.
T Consensus 204 as~~sDrsIvLyD~R~~~P--l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-----~~p~~v~~dhvsA 274 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASP--LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-----SRPLNVHKDHVSA 274 (433)
T ss_pred eeeccCCceEEEecccCCc--cceee-eeccccceecCc-cccceeeccccccceehhhhhh-----cccchhhccccee
Confidence 9999999999999999872 22221 234567899999 9999999999999999999986 6788999999999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|.+++|||.|+. |++|+.|.+|+||..+...... + .....-..|.++.|+.|.+|++
T Consensus 275 V~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRd-------------i-YhtkRMq~V~~Vk~S~Dskyi~-------- 331 (433)
T KOG0268|consen 275 VMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRD-------------I-YHTKRMQHVFCVKYSMDSKYII-------- 331 (433)
T ss_pred EEEeccCCCcch-hccccccceEEEeecCCCcchh-------------h-hhHhhhheeeEEEEeccccEEE--------
Confidence 999999999997 6799999999999998753221 0 0112235799999999999998
Q ss_pred CCCCCceEEEEecCC
Q 016547 346 STGGGGTLQIWRMSD 360 (387)
Q Consensus 346 tg~~dg~i~iw~~~~ 360 (387)
+|+.|+.|++|....
T Consensus 332 SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKA 346 (433)
T ss_pred ecCCCcceeeeecch
Confidence 899999999999763
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-34 Score=222.57 Aligned_cols=254 Identities=19% Similarity=0.372 Sum_probs=219.4
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.||-..|..+++++ ...||++++.|++|+.||++.. +.++.+.||-. .|.|++.+|.-..|++
T Consensus 187 ltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n------------kvIR~YhGHlS-~V~~L~lhPTldvl~t 252 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN------------KVIRHYHGHLS-GVYCLDLHPTLDVLVT 252 (460)
T ss_pred Eeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhh------------hhHHHhccccc-eeEEEeccccceeEEe
Confidence 45668999999999999 8889999999999999999999 78889999998 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.|.++++||+++.. .+..+.+|..+|..+.+.|.+ -.
T Consensus 253 ~grDst~RvWDiRtr~----------------------------------------~V~~l~GH~~~V~~V~~~~~d-pq 291 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRA----------------------------------------SVHVLSGHTNPVASVMCQPTD-PQ 291 (460)
T ss_pred cCCcceEEEeeecccc----------------------------------------eEEEecCCCCcceeEEeecCC-Cc
Confidence 9999999999998643 347789999999999999987 56
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++|+.|++|++||++.++ ....+..|...+.+++.+| ....||+++.|. |+-|++.. +..+..+.+|..
T Consensus 292 vit~S~D~tvrlWDl~agk--t~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~------g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGK--TMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPE------GEFLQNLSGHNA 361 (460)
T ss_pred eEEecCCceEEEeeeccCc--eeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCc------cchhhccccccc
Confidence 9999999999999999998 6778889999999999999 899999998876 88999998 888999999999
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
.|++++.+.|+ ++++|+++|.|..||.+.+...+.... ...|.. ...+..|++.+|...+..|+
T Consensus 362 iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGS-----l~sEagI~as~fDktg~rli------- 425 (460)
T KOG0285|consen 362 IINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGS-----LESEAGIFASCFDKTGSRLI------- 425 (460)
T ss_pred eeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccc--cccCCc-----cccccceeEEeecccCceEE-------
Confidence 99999999988 466999999999999998644322110 000000 12356899999999999999
Q ss_pred CCCCCCceEEEEecCC
Q 016547 345 DSTGGGGTLQIWRMSD 360 (387)
Q Consensus 345 ~tg~~dg~i~iw~~~~ 360 (387)
||..|.+|++|.-++
T Consensus 426 -t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 -TGEADKTIKMYKEDE 440 (460)
T ss_pred -eccCCcceEEEeccc
Confidence 999999999999774
No 53
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-34 Score=218.31 Aligned_cols=305 Identities=17% Similarity=0.294 Sum_probs=232.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.||.+.|+.++... ...++.+++.|.+-+||.++++ +++..+.||.+ .|++|.|++.+.++++
T Consensus 142 re~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~G-SVNsikfh~s~~L~lT 207 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESG------------ACLATYTGHTG-SVNSIKFHNSGLLLLT 207 (481)
T ss_pred hhhcccccceeeehhhc-CCcceeecccccceeEEeeccc------------cceeeeccccc-ceeeEEeccccceEEE
Confidence 34568999999999777 6779999999999999999999 89999999998 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccC--CCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS--PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++.|++..||...-.-...... .....++........ ....++........-..++..+.+|...|.+..|...+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~--a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg- 284 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNN--APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG- 284 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCC--CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-
Confidence 9999999999843211110000 000000000000000 00011111111112234677889999999999999888
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
+.+++++.|.+..+||+++++ .+..+.+|....+.++-+| ..+++++++.|-+.++||++.. -..+..|++|
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGH 356 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGH 356 (481)
T ss_pred ceeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cceeeeeccc
Confidence 789999999999999999999 7888999999999999999 9999999999999999999963 5778899999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...|+++.|..+.+ +++|++|.+|+|||+++...+ +.+.. -.++++.++.+..++.++
T Consensus 357 tdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsp--------------lATIR-tdS~~NRvavs~g~~iIA----- 414 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSP--------------LATIR-TDSPANRVAVSKGHPIIA----- 414 (481)
T ss_pred ccceeEEEEecCCc--eeecCCCceEEEeeeccccCc--------------ceeee-cCCccceeEeecCCceEE-----
Confidence 99999999999887 469999999999999986443 22222 346788899888665444
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhh-----hhhccCceEEEeeec
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLA-----ELEKFKAHVISCTSK 386 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~f~ 386 (387)
.--.+..|++||++ |..+. .-++|..-|.+++|.
T Consensus 415 ---iPhDNRqvRlfDln-------G~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 415 ---IPHDNRQVRLFDLN-------GNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred ---eccCCceEEEEecC-------CCccccCCcccccccceeeeeeecc
Confidence 33344899999999 33333 336899999999985
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=245.34 Aligned_cols=255 Identities=19% Similarity=0.296 Sum_probs=199.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCc--------------------------------cc-------
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------------------------------HA------- 69 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--------------------------------~~------- 69 (387)
.|.+.|++|.|++ +|+|||+|+.||.|+||.+...+.. ..
T Consensus 265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 6999999999999 9999999999999999998761100 00
Q ss_pred ---------ccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCcee
Q 016547 70 ---------VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 140 (387)
Q Consensus 70 ---------~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (387)
....-..+|++.+.||.+ .|..|.|+.+ ++|++++.|++|++|++....+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C------------------- 402 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC------------------- 402 (712)
T ss_pred CCccccCCCccccccccchhhhhccch-hheecccccC-CeeEeccccccEEeecCCCcce-------------------
Confidence 000112357888999998 6899999964 5899999999999999975433
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEE
Q 016547 141 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV 220 (387)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~ 220 (387)
.....|.+-|+|++|+|.++++|++|+-||.|+||++...+ +.....-..-|+++
T Consensus 403 ----------------------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAv 457 (712)
T KOG0283|consen 403 ----------------------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAV 457 (712)
T ss_pred ----------------------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhheeE
Confidence 33457899999999999988999999999999999998877 33334445889999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--c------cceEEEEEEcCCCCe-eEEEecCCCeEEEE
Q 016547 221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H------SAAVLCVQWSPDKSS-VFGSSAEDGLLNIW 291 (387)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~------~~~i~~~~~~~~~~~-ll~s~~~d~~i~vw 291 (387)
+|.| +|+..++|+.+|.+++|+.+. .+....... | ...|+++.|.|.... +| ..+.|..|+||
T Consensus 458 cy~P-dGk~avIGt~~G~C~fY~t~~------lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL-VTSnDSrIRI~ 529 (712)
T KOG0283|consen 458 CYSP-DGKGAVIGTFNGYCRFYDTEG------LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL-VTSNDSRIRIY 529 (712)
T ss_pred Eecc-CCceEEEEEeccEEEEEEccC------CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE-EecCCCceEEE
Confidence 9999 999999999999999999987 444433321 1 237999999986543 55 66779999999
Q ss_pred eCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
|.+.. .++..+.|+.. .-....|+.||++++ +++.|..|+||++...
T Consensus 530 d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV--------s~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 530 DGRDK---------------DLVHKFKGFRNTSSQISASFSSDGKHIV--------SASEDSWVYIWKNDSF 578 (712)
T ss_pred eccch---------------hhhhhhcccccCCcceeeeEccCCCEEE--------EeecCceEEEEeCCCC
Confidence 99763 23445555332 345678999999998 7778899999998643
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.9e-34 Score=211.57 Aligned_cols=268 Identities=16% Similarity=0.306 Sum_probs=224.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVL 103 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~ 103 (387)
..+.+|.+.|.+++|+- +|..||+|+.|+++.+|+++..+. .......+|++ .|-.++|+| ....++
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~----------~~~~~~~gh~~-svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF----------RKELVYRGHTD-SVDQLCWDPKHPDLFA 81 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhh----------hhhhcccCCCc-chhhheeCCCCCcceE
Confidence 45568999999999999 999999999999999999988722 22345778887 467888887 567899
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|++|++||++..+.. .......+. .-+.|+|+| .
T Consensus 82 tas~dk~ir~wd~r~~k~~----------------------------------------~~i~~~~en-i~i~wsp~g-~ 119 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCT----------------------------------------ARIETKGEN-INITWSPDG-E 119 (313)
T ss_pred EecCCceEEEEEeccCcEE----------------------------------------EEeeccCcc-eEEEEcCCC-C
Confidence 9999999999999865443 222222233 357899999 7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
+++.++.|..|.+.|.++.+ ..........++.++|+- ++++++.....|.|.|..... .+++.++++|.
T Consensus 120 ~~~~~~kdD~it~id~r~~~---~~~~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~ 189 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYK---IVNEEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHP 189 (313)
T ss_pred EEEEecCcccEEEEEecccc---eeehhcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCC
Confidence 89999999999999999877 223334556788899996 888888888899999998887 89999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
....||.|+|+|++ ||+|+.|..+.+||+... -+...+..+.=+|..+.|+.+|++|+
T Consensus 190 snCicI~f~p~Gry-fA~GsADAlvSLWD~~EL---------------iC~R~isRldwpVRTlSFS~dg~~lA------ 247 (313)
T KOG1407|consen 190 SNCICIEFDPDGRY-FATGSADALVSLWDVDEL---------------ICERCISRLDWPVRTLSFSHDGRMLA------ 247 (313)
T ss_pred cceEEEEECCCCce-EeeccccceeeccChhHh---------------hhheeeccccCceEEEEeccCcceee------
Confidence 99999999999997 789999999999999875 45566777888999999999999888
Q ss_pred CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++.|..|-|=++. +|..+.+++ +.++-..|+|+|
T Consensus 248 --SaSEDh~IDIA~ve------tGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 248 --SASEDHFIDIAEVE------TGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred --ccCccceEEeEecc------cCCeEEEee-ccCCceeEEecC
Confidence 88888999999999 899888887 789999999998
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-34 Score=236.43 Aligned_cols=252 Identities=20% Similarity=0.367 Sum_probs=211.7
Q ss_pred eeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE
Q 016547 3 LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL 82 (387)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
+|+..-.+..++.+.- .+ ...-..-+|++..|.. ..+++++|++|..|+||+..+. ..+..+
T Consensus 32 LynG~V~IWnyetqtm---Vk--sfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~------------ekV~~F 93 (794)
T KOG0276|consen 32 LYNGDVQIWNYETQTM---VK--SFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG------------EKVKTF 93 (794)
T ss_pred eecCeeEEEeccccee---ee--eeeecccchhhheeee-ccceEEEecCCceEEEEecccc------------eeeEEe
Confidence 4555555555543321 11 1112567899999999 8899999999999999999999 788999
Q ss_pred eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547 83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 162 (387)
Q Consensus 83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (387)
..|.+ -|.+++.+|...+++++|.|-+|++||.++ .+.+.
T Consensus 94 eAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~---------------------------------------~wa~~ 133 (794)
T KOG0276|consen 94 EAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---------------------------------------EWACE 133 (794)
T ss_pred ecccc-ceeeeeecCCCCeEEecCCccEEEEeeccC---------------------------------------ceeee
Confidence 99998 799999999999999999999999999985 34556
Q ss_pred eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC--CeEEEeeCCCeEE
Q 016547 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD--NLILTGSADNSVR 240 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~ 240 (387)
+++.+|..-|.+++|.|.+.+.|++++-|++|++|.+.+.. ...++.+|...|+|+++-+ .+ .+|++|++|..|+
T Consensus 134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIK 210 (794)
T ss_pred eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--CceeeeccccCcceEEecc-CCCcceEEecCCCceEE
Confidence 88999999999999999998999999999999999998877 6778889999999999977 33 5999999999999
Q ss_pred EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547 241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
+||..+ ..+++++++|...|+.+.|+|.-+ ++++|++||+++||+-.+.... ..+.-.
T Consensus 211 vWDyQt------k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE---------------~tLn~g 268 (794)
T KOG0276|consen 211 VWDYQT------KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE---------------KTLNYG 268 (794)
T ss_pred Eeecch------HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh---------------hhhhcC
Confidence 999999 999999999999999999999998 6789999999999998875332 223334
Q ss_pred CCCeeEEEEccCCCeEE
Q 016547 321 RDKVVDFHWNASDPWTV 337 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~ 337 (387)
-..+.+++-.+.++.++
T Consensus 269 leRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIA 285 (794)
T ss_pred CceEEEEeecCCCCeEE
Confidence 45777777777665543
No 57
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=7.8e-33 Score=241.20 Aligned_cols=257 Identities=17% Similarity=0.240 Sum_probs=187.5
Q ss_pred ecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCC
Q 016547 50 HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPA 128 (387)
Q Consensus 50 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 128 (387)
|+.++.|++|+.... .++..+.+|.+ .|.+++|+|+ +.+|++|+.|++|++||+.+......
T Consensus 50 GG~~gvI~L~~~~r~------------~~v~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------------PPVIKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---- 112 (568)
T ss_pred CCceeEEEeeecCCC------------ceEEEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----
Confidence 567888999998766 57788999987 7999999996 78999999999999999975321000
Q ss_pred cccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeE
Q 016547 129 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK 208 (387)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 208 (387)
....++..+.+|...|.+++|+|++..++++++.|+.|++||+++++ ...
T Consensus 113 ----------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~ 162 (568)
T PTZ00420 113 ----------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAF 162 (568)
T ss_pred ----------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEE
Confidence 00123356788999999999999986667899999999999999887 334
Q ss_pred EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE-----EEEcCCCCeeEEEec
Q 016547 209 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-----VQWSPDKSSVFGSSA 283 (387)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~ll~s~~ 283 (387)
.+. |...|.+++|+| ++.+|++++.|+.|++||+++ +..+.++.+|.+.+.. ..|++++.+++ +++
T Consensus 163 ~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG 233 (568)
T PTZ00420 163 QIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-STG 233 (568)
T ss_pred EEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EEE
Confidence 443 567899999999 999999999999999999998 8888899999876443 33568888765 544
Q ss_pred CC----CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 284 ED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 284 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.| +.|+|||++....+. ....+..+.+.+...-..+++.+ ++ +|+.|++|++|++.
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl------------~~~~ld~~~~~L~p~~D~~tg~l-~l-------sGkGD~tIr~~e~~ 293 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSAL------------VTMSIDNASAPLIPHYDESTGLI-YL-------IGKGDGNCRYYQHS 293 (568)
T ss_pred cCCCCccEEEEEECCCCCCce------------EEEEecCCccceEEeeeCCCCCE-EE-------EEECCCeEEEEEcc
Confidence 44 479999999754331 12223333333333333344544 44 55666999999998
Q ss_pred CCcccccchhhhhhhccCceEEEeeecC
Q 016547 360 DLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.. ....+.+.. +..++.+++|.|
T Consensus 294 ~~----~~~~l~~~~-s~~p~~g~~f~P 316 (568)
T PTZ00420 294 LG----SIRKVNEYK-SCSPFRSFGFLP 316 (568)
T ss_pred CC----cEEeecccc-cCCCccceEEcc
Confidence 31 122233333 567888888887
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=225.62 Aligned_cols=250 Identities=21% Similarity=0.377 Sum_probs=203.3
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..+..+|..+|..+.|+| +.++|++|+.|..+.+||+.+++ ....+....+..+.+++|.|||..++
T Consensus 262 ~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd------------~~~~y~~~~~~S~~sc~W~pDg~~~V 328 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGD------------LRHLYPSGLGFSVSSCAWCPDGFRFV 328 (519)
T ss_pred eeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcch------------hhhhcccCcCCCcceeEEccCCceeE
Confidence 567789999999999999 77888888888899999999994 33333222233578999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCC
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSA 182 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 182 (387)
+|+.|+.+..||++.... ..+++- ...|.+++..+||
T Consensus 329 ~Gs~dr~i~~wdlDgn~~-----------------------------------------~~W~gvr~~~v~dlait~Dg- 366 (519)
T KOG0293|consen 329 TGSPDRTIIMWDLDGNIL-----------------------------------------GNWEGVRDPKVHDLAITYDG- 366 (519)
T ss_pred ecCCCCcEEEecCCcchh-----------------------------------------hcccccccceeEEEEEcCCC-
Confidence 999999999999975321 122221 2469999999999
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
..+++.+.|..|++++.++... +.......+|++++.+. ++.++++.=.+..+++||+.. .+.++.+.+|
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~d---r~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e------~~lv~kY~Gh 436 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVD---RGLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE------NKLVRKYFGH 436 (519)
T ss_pred cEEEEEecccceeeechhhhhh---hccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch------hhHHHHhhcc
Confidence 7777778999999999887652 22333457899999999 999999999999999999997 8888999888
Q ss_pred cce--EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 263 SAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 263 ~~~--i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
... +..-+|-.....++|+|++|+.|+||+..++ .++..+.||...|++++|+|..++++|++
T Consensus 437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred cccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 643 5555666555446889999999999999886 56888999999999999999999999855
Q ss_pred cCCCCCCCCCceEEEEecCC
Q 016547 341 SDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~ 360 (387)
|+| |+||||....
T Consensus 502 sDD-------gtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDD-------GTIRIWGPSD 514 (519)
T ss_pred CCC-------CeEEEecCCc
Confidence 555 9999999874
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.7e-34 Score=216.38 Aligned_cols=282 Identities=18% Similarity=0.231 Sum_probs=216.8
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcc------cccCCCCCCCeEEEeccCCCceEEEE
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH------AVLGATNSRPDLILTGHQDNAEFALA 94 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~~h~~~~v~~~~ 94 (387)
..+...+..|++++++.+|+| +|.++|||+.|-.|+|.|++...... .-........++++..|.+ .|+++.
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~ 179 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLD 179 (430)
T ss_pred ccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-ccccee
Confidence 345556678999999999999 99999999999999999998432111 1111122245778899998 799999
Q ss_pred ECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE
Q 016547 95 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 174 (387)
Q Consensus 95 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 174 (387)
|+|....|++|+.|++|+++|+.+...... ........+|.+
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA--------------------------------------~K~~qd~~~vrs 221 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRA--------------------------------------FKVFQDTEPVRS 221 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHH--------------------------------------HHHhhccceeee
Confidence 999999999999999999999975422111 111234578999
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 253 (387)
+.|+|.| .+++.|.....+++||+.+.+.-. .....+|.+.|+++.+++ .+++.++++.||.|++||--+ .
T Consensus 222 iSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS------~ 293 (430)
T KOG0640|consen 222 ISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS------N 293 (430)
T ss_pred EeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc------H
Confidence 9999999 889999999999999999876211 112356899999999999 999999999999999999888 8
Q ss_pred CceEEec-ccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC-----------------------
Q 016547 254 SPINKFE-GHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN----------------------- 308 (387)
Q Consensus 254 ~~~~~~~-~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------------------- 308 (387)
+++.++. +|. ..|.+..|..+++++| +.+.|..+++|.+.++.....-......
T Consensus 294 rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 294 RCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred HHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc
Confidence 8888885 454 4699999999999876 8889999999999885443322111000
Q ss_pred -----------CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 309 -----------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 309 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..........+|++.+..+.-+|.++-++ ||+.|..+|+|--+
T Consensus 373 as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm--------TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM--------TCSDDFRARFWYRR 426 (430)
T ss_pred ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee--------eecccceeeeeeec
Confidence 00011122357999999999999999877 77777999999754
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.1e-32 Score=228.41 Aligned_cols=245 Identities=25% Similarity=0.509 Sum_probs=208.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.....|...+.++.|+| +++++++++.||.|++||+.+. +....+..|.. .|.++.|+++++++++
T Consensus 45 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 110 (289)
T cd00200 45 RTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTS-YVSSVAFSPDGRILSS 110 (289)
T ss_pred EEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcc------------cceEEEeccCC-cEEEEEEcCCCCEEEE
Confidence 34557899999999999 7789999999999999999987 56667778876 6899999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|+.|.+||+.+.. ....+..|...+.++.|+|++ .+
T Consensus 111 ~~~~~~i~~~~~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~ 149 (289)
T cd00200 111 SSRDKTIKVWDVETGK----------------------------------------CLTTLRGHTDWVNSVAFSPDG-TF 149 (289)
T ss_pred ecCCCeEEEEECCCcE----------------------------------------EEEEeccCCCcEEEEEEcCcC-CE
Confidence 9889999999997432 224455788899999999997 78
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++++.++.|++||++..+ ....+..|...+.+++|+| +++.+++++.||.|++||++. ++.+..+..|..
T Consensus 150 l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~ 220 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHEN 220 (289)
T ss_pred EEEEcCCCcEEEEEccccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcCC
Confidence 8888889999999998776 4566668888999999999 888999999999999999998 778888878899
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
.+.+++|+|++. ++++++.||.|++||+... .....+..|...|.+++|+|++.+++
T Consensus 221 ~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~------- 277 (289)
T cd00200 221 GVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLA------- 277 (289)
T ss_pred ceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEE-------
Confidence 999999999966 5667878999999999864 23455568888999999999988877
Q ss_pred CCCCCCceEEEEe
Q 016547 345 DSTGGGGTLQIWR 357 (387)
Q Consensus 345 ~tg~~dg~i~iw~ 357 (387)
+++.||.|++|+
T Consensus 278 -~~~~d~~i~iw~ 289 (289)
T cd00200 278 -SGSADGTIRIWD 289 (289)
T ss_pred -EecCCCeEEecC
Confidence 777889999996
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-33 Score=234.15 Aligned_cols=242 Identities=21% Similarity=0.428 Sum_probs=211.0
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec-cCCCceEEEEECCCCCEEEEecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
.+.|+++.|++ +|.+||+|..+|.|.|||.... +....+.+ |.. .|-+++|. +..+.+|+.|+
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~-rvg~laW~--~~~lssGsr~~ 280 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHAS-RVGSLAWN--SSVLSSGSRDG 280 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCc-eeEEEecc--CceEEEecCCC
Confidence 89999999999 9999999999999999999988 66677778 665 79999997 77899999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|..+|++...... ..+.+|...|..++|++++ .++++|+
T Consensus 281 ~I~~~dvR~~~~~~---------------------------------------~~~~~H~qeVCgLkws~d~-~~lASGg 320 (484)
T KOG0305|consen 281 KILNHDVRISQHVV---------------------------------------STLQGHRQEVCGLKWSPDG-NQLASGG 320 (484)
T ss_pred cEEEEEEecchhhh---------------------------------------hhhhcccceeeeeEECCCC-CeeccCC
Confidence 99999998643321 2367899999999999999 8999999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 267 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 267 (387)
.|+.+.|||....+ ....+..|...|..++|+|....+||+|+ .|+.|++||..+ +..+..+. ....|.
T Consensus 321 nDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vd-tgsQVc 391 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVD-TGSQVC 391 (484)
T ss_pred CccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEecccc-cCCcee
Confidence 99999999996655 56778899999999999999999999976 499999999998 88888887 467899
Q ss_pred EEEEcCCCCeeEEEe-cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 268 CVQWSPDKSSVFGSS-AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.|.|++..+.++.+- ..++.|.||++.+. ..+..+.+|...|..++++|||..++ +
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~--------t 448 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIV--------T 448 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEE--------E
Confidence 999999987766443 35678999999885 45777899999999999999999998 8
Q ss_pred CCCCceEEEEecCC
Q 016547 347 TGGGGTLQIWRMSD 360 (387)
Q Consensus 347 g~~dg~i~iw~~~~ 360 (387)
|+.|.++++|++-+
T Consensus 449 ~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 449 GAADETLRFWNLFD 462 (484)
T ss_pred ecccCcEEeccccC
Confidence 88889999999984
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-32 Score=208.36 Aligned_cols=264 Identities=16% Similarity=0.288 Sum_probs=213.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC--
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 107 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-- 107 (387)
-.+.|+++.|++ +|.+|++++.|.+++|||..++ +...++..+.- .+..++|......++.++.
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g------------~~~~ti~skky-G~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSG------------KQVKTINSKKY-GVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCC------------ceeeEeecccc-cccEEEEecCCceEEEccCCC
Confidence 478999999999 8999999999999999999999 67777777665 3678888777777776665
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
|.+|+..++.+.+ .++.+.+|...|..++.+|-+ ..+++
T Consensus 79 d~tIryLsl~dNk----------------------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS 117 (311)
T KOG1446|consen 79 DDTIRYLSLHDNK----------------------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLS 117 (311)
T ss_pred CCceEEEEeecCc----------------------------------------eEEEcCCCCceEEEEEecCCC-CeEEe
Confidence 8899999997643 347889999999999999998 78999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec---cccc
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSA 264 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~~~ 264 (387)
++.|++|++||++..+.+..... ..-...+|+| .|-++|++...+.|++||+|..+ ..+..++. ....
T Consensus 118 ~S~D~tvrLWDlR~~~cqg~l~~----~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRVKKCQGLLNL----SGRPIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEA 188 (311)
T ss_pred cccCCeEEeeEecCCCCceEEec----CCCcceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCcc
Confidence 99999999999998774333222 2334678999 99999999988899999999875 34555543 3367
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC---eeEEEEccCCCeEEEEec
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~s~s 341 (387)
..+.+.|+|+|++|| .+...+.+++.|.-.+. ....+.++... -.+..|.|++++++
T Consensus 189 ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~G~---------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl---- 248 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSIL-LSTNASFIYLLDAFDGT---------------VKSTFSGYPNAGNLPLSATFTPDSKFVL---- 248 (311)
T ss_pred ceeeeEEcCCCCEEE-EEeCCCcEEEEEccCCc---------------EeeeEeeccCCCCcceeEEECCCCcEEE----
Confidence 789999999999877 55668899999988763 23334443322 26788999999988
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f~P 387 (387)
+|+.||+|.+|+++ ++..+..+++ +..++.++.|.|
T Consensus 249 ----~gs~dg~i~vw~~~------tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 249 ----SGSDDGTIHVWNLE------TGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred ----EecCCCcEEEEEcC------CCcEeeEecCCCCCCccccccCC
Confidence 88888999999998 8999888888 788999999988
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-32 Score=256.14 Aligned_cols=263 Identities=17% Similarity=0.232 Sum_probs=204.8
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEec
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG 106 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~ 106 (387)
..+...|.+++|+|..+.+||+++.||+|++||+.++ +.+..+.+|.+ .|++++|+| ++.+|++|+
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------QLVTEMKEHEK-RVWSIDYSSADPTLLASGS 595 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------eEEEEecCCCC-CEEEEEEcCCCCCEEEEEc
Confidence 3456789999999877889999999999999999887 67778889987 799999997 789999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.|++|++||+.++.. +..+..+ ..+.++.|.+..+.+++
T Consensus 596 ~Dg~v~iWd~~~~~~----------------------------------------~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 596 DDGSVKLWSINQGVS----------------------------------------IGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred CCCEEEEEECCCCcE----------------------------------------EEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999975422 1333333 57899999665448999
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+|+.||.|++||++.... ....+.+|...|.++.|. ++.+|++++.|+.|++||++.........++..+.+|...+
T Consensus 635 tgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 999999999999987653 245567899999999996 47899999999999999998532111146788999999999
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.+++|+|++.+ +++|+.|+.|++|+............... .+ ..-.....|...|.+++|+|++..++ +
T Consensus 712 ~~v~~s~~~~~-lasgs~D~~v~iw~~~~~~~~~s~~~~~~-~~-~~~~~~~~~~~~V~~v~ws~~~~~lv--------a 780 (793)
T PLN00181 712 NFVGLSVSDGY-IATGSETNEVFVYHKAFPMPVLSYKFKTI-DP-VSGLEVDDASQFISSVCWRGQSSTLV--------A 780 (793)
T ss_pred eEEEEcCCCCE-EEEEeCCCEEEEEECCCCCceEEEecccC-Cc-ccccccCCCCcEEEEEEEcCCCCeEE--------E
Confidence 99999999985 68999999999999865322111000000 00 00011234667899999999999887 6
Q ss_pred CCCCceEEEEec
Q 016547 347 TGGGGTLQIWRM 358 (387)
Q Consensus 347 g~~dg~i~iw~~ 358 (387)
|+.||.|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 777899999996
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=227.76 Aligned_cols=305 Identities=17% Similarity=0.217 Sum_probs=226.1
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 98 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~ 98 (387)
.|.-...++.+|+..|.++++-| .|-.|++|+.|.+|++||+....... +..+.+..-....|.++.|++.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~--------~~fr~l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASM--------RSFRQLQPCETHQINSLQYSVT 225 (641)
T ss_pred CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccc--------hhhhccCcccccccceeeecCC
Confidence 45555667778999999999999 88899999999999999998774322 2222333333336899999999
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
|..|++.+.....+++|-..........- .....-+...++|...++|.+|+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KG----------------------------DQYI~Dm~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKG----------------------------DQYIRDMYNTKGHIAELTCGCWH 277 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeecc----------------------------chhhhhhhccCCceeeeeccccc
Confidence 99988888888999998654321110000 00111224457899999999999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEE--e--eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKV--E--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
|+....|++++.||++++||+...+.+.... . .+..-+++.++|+| ++.++|+|..||.|.+|+.+.... ..
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p 353 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RP 353 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---cc
Confidence 9998999999999999999998765332211 1 12334688999999 999999999999999999876432 23
Q ss_pred ceEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEc
Q 016547 255 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWN 330 (387)
Q Consensus 255 ~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 330 (387)
....-.+|.. .|+||.||++|++| ++-+.|+.+++||++...+++.. ..+ ..-+-+.++||
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~--------------~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNV--------------RTGLPTPFPGTDCCFS 418 (641)
T ss_pred ceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccchhh--------------hcCCCccCCCCccccC
Confidence 3444567876 89999999999975 69999999999999997665431 112 12245789999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|+.+.++...|.. -+...|++.+||.. +-+.+.++.--...|..+.|||
T Consensus 419 Pd~kli~TGtS~~--~~~~~g~L~f~d~~------t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 419 PDDKLILTGTSAP--NGMTAGTLFFFDRM------TLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred CCceEEEeccccc--CCCCCceEEEEecc------ceeeEEEecCCCceEEEEeecc
Confidence 9988766544433 45566899999988 6777777777788999999998
No 65
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=9.5e-33 Score=216.11 Aligned_cols=281 Identities=28% Similarity=0.555 Sum_probs=220.2
Q ss_pred CcceeeeeeecCCCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcc----cccCCCCCCCeEEEeccCCCceEEE
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRH----AVLGATNSRPDLILTGHQDNAEFAL 93 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~h~~~~v~~~ 93 (387)
.|.+ ..+..+|.+.++.+.-.+. +..+.|+-+..|.|.||++....... ........+++.++.+|.. .=+.+
T Consensus 140 ~P~~-~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~L 217 (440)
T KOG0302|consen 140 KPQI-EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGL 217 (440)
T ss_pred cccc-cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceee
Confidence 3444 3566789999999998774 45677788899999999986542211 1122345689999999997 56899
Q ss_pred EECCCC-CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547 94 AMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 172 (387)
Q Consensus 94 ~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 172 (387)
+|||-. ..|++|.--+.|++|...++.-.... ..+.+|+..|
T Consensus 218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------------~Pf~gH~~SV 260 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------------RPFTGHTKSV 260 (440)
T ss_pred ecccccccccccCccccceEeeeeccCceeecC-------------------------------------ccccccccch
Confidence 999943 35888888899999998765332221 3456799999
Q ss_pred EEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547 173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 252 (387)
-.++|+|.....|++|+-||+|+|||++.+.+........|.+.|+.|.|+. ...+||+|+.||+++|||+|..+.
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~--- 336 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS--- 336 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC---
Confidence 9999999988899999999999999999985444444589999999999999 667999999999999999998776
Q ss_pred CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC----CCCCCceeeeeeccCCCCeeEEE
Q 016547 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR----TTNYPAGLFFQHAGHRDKVVDFH 328 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~ 328 (387)
++++..++.|..+|+++.|+|....+|++++.|..|.+||+.......+.... -...|+++++...+. ..+..+.
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ-ke~Kevh 415 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ-KEVKEVH 415 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch-hHhhhhe
Confidence 68999999999999999999987778889999999999999864442222111 122567777776554 4789999
Q ss_pred EccCCCeEEEEecCC
Q 016547 329 WNASDPWTVVSVSDD 343 (387)
Q Consensus 329 ~~~~~~~l~~s~s~d 343 (387)
|++.-+-++++.+.|
T Consensus 416 WH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAID 430 (440)
T ss_pred eccCCCCeEEEeccc
Confidence 999988888876655
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=226.88 Aligned_cols=251 Identities=22% Similarity=0.403 Sum_probs=207.2
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PY 101 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~ 101 (387)
......+|..+|.+++|+. ++..+.+++.|+.|++||++++ ++...+ |.+..++|+.|+|++ +.
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG------------~~~~~f--~~~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETG------------QVLSRF--HLDKVPTCVKFHPDNQNI 314 (503)
T ss_pred eehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccc------------eEEEEE--ecCCCceeeecCCCCCcE
Confidence 3456678999999999999 8889999999999999999999 444444 455578999999998 78
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++|+.|+.|+.||++++. .++.+..|-+.|..+.|.++|
T Consensus 315 fl~G~sd~ki~~wDiRs~k----------------------------------------vvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGK----------------------------------------VVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred EEEecCCCcEEEEeccchH----------------------------------------HHHHHHhhhhheeeeEEccCC
Confidence 8999999999999998654 336677899999999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
..+++.+.|+.+++|+.+..-. .......+.....++..+| .+.++++-+.|+.|.+|.+..... ......+++
T Consensus 355 -~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feG 428 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEG 428 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccc---cCHhhhhcc
Confidence 8899999999999999887652 2222233444567899999 999999999999999999765322 334455667
Q ss_pred cc--ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 262 HS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 262 ~~--~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
|. +.-..+.|||||++ |++|+.||.+.+||.++. .++..+.+|.+.+..+.|+|.....++
T Consensus 429 h~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~---------------kl~~~lkah~~~ci~v~wHP~e~Skva- 491 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTT---------------KLVSKLKAHDQPCIGVDWHPVEPSKVA- 491 (503)
T ss_pred eeccCceeeEEEcCCCCe-EEeecCCccEEEeechhh---------------hhhhccccCCcceEEEEecCCCcceeE-
Confidence 74 45668899999997 579999999999999985 457778999999999999999887777
Q ss_pred ecCCCCCCCCCceEEEEe
Q 016547 340 VSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~ 357 (387)
|||.||.|++|+
T Consensus 492 ------t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 ------TCGWDGLIKIWD 503 (503)
T ss_pred ------ecccCceeEecC
Confidence 667789999996
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-33 Score=238.47 Aligned_cols=250 Identities=20% Similarity=0.344 Sum_probs=207.6
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.++.+|.|+|+.++|+| .+.++++|++|-.|+||+..+. +++.++.||-+ -|..+.|++.-.++++
T Consensus 45 ~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r------------rclftL~GHlD-YVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 45 DRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR------------RCLFTLLGHLD-YVRTVFFHHEYPWILS 110 (1202)
T ss_pred hhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc------------eehhhhccccc-eeEEeeccCCCceEEE
Confidence 34557999999999999 8899999999999999999999 88999999998 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
+|.|.+|+||+.++. .++..+.+|..-|.|.+|+|.. .+
T Consensus 111 ASDDQTIrIWNwqsr----------------------------------------~~iavltGHnHYVMcAqFhptE-Dl 149 (1202)
T KOG0292|consen 111 ASDDQTIRIWNWQSR----------------------------------------KCIAVLTGHNHYVMCAQFHPTE-DL 149 (1202)
T ss_pred ccCCCeEEEEeccCC----------------------------------------ceEEEEecCceEEEeeccCCcc-ce
Confidence 999999999999864 3458889999999999999987 78
Q ss_pred EEEecCCCeEEEEEccCCCC---------------------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 185 FCSVGDDSCLILWDARVGTS---------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
++++|-|.+|++||+..-+. .....+.+|...|+-++|+| .-.++++|++|+
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDR 228 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDR 228 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcc
Confidence 99999999999999853210 12345678999999999999 899999999999
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
.|++|.+...+ .-.+-+..+|...|.++-|+|... ++.+.++|+.|+|||+.+. ..+.++
T Consensus 229 qVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR---------------t~v~tf 288 (1202)
T KOG0292|consen 229 QVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR---------------TSVQTF 288 (1202)
T ss_pred eeeEEEecccc----ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc---------------cceeee
Confidence 99999998633 345667789999999999999877 4569999999999999985 234455
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....+..+.++-+|..+.++ +|.|+-+.||.+.
T Consensus 289 rrendRFW~laahP~lNLfA---------AgHDsGm~VFkle 321 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELNLFA---------AGHDSGMIVFKLE 321 (1202)
T ss_pred eccCCeEEEEEecCCcceee---------eecCCceEEEEEc
Confidence 55556677777777665332 3344555666555
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=231.36 Aligned_cols=271 Identities=17% Similarity=0.309 Sum_probs=228.8
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.......||...|++++++. +...+++|+. +.++||+.++. ++++++..- .+.+..|.|.+++
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~------------kciRTi~~~---y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTL------------KCIRTITCG---YILASKFVPGDRY 426 (888)
T ss_pred cceeeeccchhheeEEEeec-CceeeeecCC-CcEEEEEccCc------------ceeEEeccc---cEEEEEecCCCce
Confidence 33467778999999999998 7777777654 58999999998 677776544 4789999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++|...|.+.++|+.... .+...+.|.+.|+.++.+||+
T Consensus 427 Iv~G~k~Gel~vfdlaS~~----------------------------------------l~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASAS----------------------------------------LVETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred EEEeccCCceEEEEeehhh----------------------------------------hhhhhhccccceeeeeecCCC
Confidence 9999999999999997532 235567899999999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCC-----ceeE-----EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTS-----PVIK-----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~-----~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
..+++|+.|.+|++||..-... .... ....-+..|.|+.++| ++.+|+++=-|+++++|-+.+
T Consensus 467 -~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt----- 539 (888)
T KOG0306|consen 467 -KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT----- 539 (888)
T ss_pred -CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----
Confidence 7899999999999999753211 0000 1122456799999999 999999999999999999999
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
.+...++.+|.-||.|+..+||+. ++++|+.|..|+||-+.-+ .+...+.+|.+.|.++.|.|
T Consensus 540 -lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFG---------------DCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 540 -LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG---------------DCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred -eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccc---------------hhhhhhhcccCceeEEEEcc
Confidence 888999999999999999999999 5789999999999999886 34566789999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
....++ |+|.|+.|+-||-. .-+.++.+.+|...|++++.+|
T Consensus 603 ~~~~FF--------t~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 603 KTHLFF--------TCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred cceeEE--------EecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence 665555 66677999999999 7889999999999999999887
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=203.56 Aligned_cols=285 Identities=15% Similarity=0.220 Sum_probs=227.2
Q ss_pred eeecCCCcEEEEEecC--CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 26 KTIIHPGEVNRIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~--~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.-.||..+|-.++|+| ++|.+|++++.||.=.+-+-+++ .-+-++.+|.+ +|++..++.+....+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg------------dwigtfeghkg-avw~~~l~~na~~aa 75 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG------------DWIGTFEGHKG-AVWSATLNKNATRAA 75 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC------------CcEEeeeccCc-ceeeeecCchhhhhh
Confidence 4458999999999998 68899999999999888888888 78899999998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccC-CCCCCceeccCCCCCCCCCCCCCCCCC-CCceeecCCCCCeEEEEEccCC
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKS-AGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++.|=+-++||.-++.....+....... ..-.........+.....+++++.... .+...+.+|++.|..+.|+...
T Consensus 76 saaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence 99999999999998876554444332221 111111222233334445555555443 3556788999999999999877
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
+.+++.+.|++|++||.+++. .+..+ ....+|+++.+++ ++++|.++ ..+.|.+||..+ ...+..++
T Consensus 156 -~~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaks------f~~lKs~k- 222 (334)
T KOG0278|consen 156 -KCILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKS------FGLLKSYK- 222 (334)
T ss_pred -ceEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCceeEEecccc------ccceeecc-
Confidence 788888999999999999998 44444 4578899999999 88877664 567899999998 77777777
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee-eccCCCCeeEEEEccCCCeEEEEe
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
....|.+...+|+.. ++++|++|..++.||..++.+ +.. ..+|.++|.++.|+|+|...+
T Consensus 223 ~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeE---------------i~~~nkgh~gpVhcVrFSPdGE~yA--- 283 (334)
T KOG0278|consen 223 MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEE---------------IGSYNKGHFGPVHCVRFSPDGELYA--- 283 (334)
T ss_pred CccccccccccCCCc-eEEecCcceEEEEEeccCCce---------------eeecccCCCCceEEEEECCCCceee---
Confidence 467799999999986 678999999999999998643 223 378999999999999998766
Q ss_pred cCCCCCCCCCceEEEEecCC
Q 016547 341 SDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~ 360 (387)
+|+.||+|++|.+..
T Consensus 284 -----sGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 284 -----SGSEDGTIRLWQTTP 298 (334)
T ss_pred -----ccCCCceEEEEEecC
Confidence 889999999999884
No 70
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=206.20 Aligned_cols=266 Identities=18% Similarity=0.285 Sum_probs=207.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-.+.|.+++|+|....+++.|+.||+|++|+++..-. ..-.....|.+ +|.+++|+.||..+++|+.|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----------~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----------LVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc----------ccchhhhccCC-CeEEEEEccCCceEEeeccCC
Confidence 4688999999998888888999999999999987410 11134555666 899999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-eeEEEe
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSV 188 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~ 188 (387)
.+++||+.+++. ..+..|..+|.++.|-+... ..|++|
T Consensus 95 ~~k~wDL~S~Q~-----------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 95 QAKLWDLASGQV-----------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred ceEEEEccCCCe-----------------------------------------eeeeecccceeEEEEecCCCcceeEec
Confidence 999999987533 56678999999999987651 378999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL 267 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~ 267 (387)
+.|++|++||.+... .+..+. -...++++.. ...+++++..++.|.+|++++... ..... ....-.+.
T Consensus 134 SWDKTlKfWD~R~~~--pv~t~~-LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~t-----e~k~~~SpLk~Q~R 202 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSN--PVATLQ-LPERVYAADV---LYPMAVVATAERHIAVYNLENPPT-----EFKRIESPLKWQTR 202 (347)
T ss_pred ccccceeecccCCCC--eeeeee-ccceeeehhc---cCceeEEEecCCcEEEEEcCCCcc-----hhhhhcCcccceee
Confidence 999999999999776 344433 3466777765 456899999999999999987321 11111 11334678
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---------CCeeEEEEccCCCeEEE
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKVVDFHWNASDPWTVV 338 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~ 338 (387)
|++..++... +|.|+-+|++.|..+..+... .-+.+..|. -.|++++|+|....|+
T Consensus 203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~~-------------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv- 267 (347)
T KOG0647|consen 203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNPK-------------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV- 267 (347)
T ss_pred EEEEEecCCc-eEeeeecceEEEEecCCCCcc-------------CceeEEEeccCCCCCCceEEecceEeecccceEE-
Confidence 9988888774 578999999999999875221 122333333 2688999999888887
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
|.|.||++.+||-+ ....|.+.+.|..+|++++|+
T Consensus 268 -------TaGsDGtf~FWDkd------ar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 268 -------TAGSDGTFSFWDKD------ARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred -------EecCCceEEEecch------hhhhhhccCcCCCccceeEec
Confidence 88888999999999 788888999999999999996
No 71
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-33 Score=204.44 Aligned_cols=259 Identities=20% Similarity=0.313 Sum_probs=208.5
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEe
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSG 105 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~ 105 (387)
..|.+.|..+...- .+..|||++.|++|+|+.++..- ..+.+..|.||.+ +|..++|.. .|.+|++|
T Consensus 8 t~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~---------~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNG---------QSKLLAELTGHSG-PVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCC---------CceeeeEecCCCC-CeeEEeecccccCcEeeEe
Confidence 36999999887555 88999999999999999998772 1257889999998 899999976 79999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Cee
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE 184 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~ 184 (387)
+.||.|.||.-++++ .........|+..|++++|.|.+ +-+
T Consensus 77 sYDgkVIiWke~~g~--------------------------------------w~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGR--------------------------------------WTKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred ecCceEEEEecCCCc--------------------------------------hhhhhhhhhhcccceeecccccccceE
Confidence 999999999987652 22335567899999999999974 257
Q ss_pred EEEecCCCeEEEEEccCC-CCceeEEeeccCCCeeEEEecCCC--C-----------CeEEEeeCCCeEEEEEeccCCCC
Q 016547 185 FCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLD--D-----------NLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~-----------~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
|++++.||.|.+.+.+.. .....+....|.-.|++++|.|.. + ..|++|+.|+.|+||+..+..
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-- 196 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-- 196 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence 889999999999998876 444455677899999999999831 2 579999999999999998742
Q ss_pred CCCCceEEeccccceEEEEEEcCCC---CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
...-..+++|.+.|..++|.|.- +..+|++++||++.||..+....+ ....+ +......+..+
T Consensus 197 --w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~---------wk~tl---l~~f~~~~w~v 262 (299)
T KOG1332|consen 197 --WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP---------WKKTL---LEEFPDVVWRV 262 (299)
T ss_pred --hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---------ccccc---cccCCcceEEE
Confidence 55666789999999999999964 345799999999999988743222 11122 23356789999
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.|++.|..|. .++.|+.|.+|.-+
T Consensus 263 SWS~sGn~La--------Vs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 263 SWSLSGNILA--------VSGGDNKVTLWKEN 286 (299)
T ss_pred EEeccccEEE--------EecCCcEEEEEEeC
Confidence 9999999888 44556899999876
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-30 Score=188.94 Aligned_cols=309 Identities=19% Similarity=0.280 Sum_probs=229.5
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccc-ccCCC-CCCCeEEEeccCCCceEEEEEC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA-VLGAT-NSRPDLILTGHQDNAEFALAMC 96 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~h~~~~v~~~~~~ 96 (387)
.+.++....+.....|++++|+| .+.+.|.|+...+.+|-.......... ..... +......-..|..+.|+|.+|+
T Consensus 20 k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred ccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 34566677778889999999999 888999999999999886544322211 11100 1111222333444579999999
Q ss_pred CCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc------------CCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK------------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
|+|.++++|+.|++|++..++...+.......... .....+..+..+.+.++..+.+-+...+.....
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999999887755433222221111 122223334444455666677777888888999
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee--cc-----CCCeeEEEecCCCCCeEEEeeCCC
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AH-----DADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
+.+|++.|.++- +-++ .++++|+.|.+|++||++-.. ++..+. .| .+.|.+++..| .+++|++|-.|.
T Consensus 179 ~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~ds 253 (350)
T KOG0641|consen 179 LSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADS 253 (350)
T ss_pred ecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCC
Confidence 999999998873 2234 789999999999999998766 333322 12 25789999999 999999999999
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
..-+||++. ++.++.+..|...|.++.|+|...|+| +++.|..|++-|+...-.. .-.+...
T Consensus 254 sc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdla~-----------el~~~vv 315 (350)
T KOG0641|consen 254 SCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDLAH-----------ELPIMVV 315 (350)
T ss_pred ceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccchhh-----------cCceEEE
Confidence 999999998 899999999999999999999988765 9999999999999753111 0124455
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..|...+..+.|+|..-.++ +.+.|.++.+|-++
T Consensus 316 ~ehkdk~i~~rwh~~d~sfi--------sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFI--------SSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceee--------eccCcceEEEeccC
Confidence 67999999999999876666 77788999999875
No 73
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-32 Score=230.57 Aligned_cols=260 Identities=21% Similarity=0.342 Sum_probs=218.1
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..+.++. +-+.|..|.| .++++++|...|.+.++|+... ..+...+.|.+ +|++++.+||++.++
T Consensus 406 ciRTi~~-~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~------------~l~Eti~AHdg-aIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 406 CIRTITC-GYILASKFVP-GDRYIVLGTKNGELQVFDLASA------------SLVETIRAHDG-AIWSISLSPDNKGFV 470 (888)
T ss_pred eeEEecc-ccEEEEEecC-CCceEEEeccCCceEEEEeehh------------hhhhhhhcccc-ceeeeeecCCCCceE
Confidence 3444443 3788999999 8899999999999999999988 56667788998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+||.|.+|++||+.--...... .... .......++ .-.+.|.|++++||+ .
T Consensus 471 T~saDktVkfWdf~l~~~~~gt---------------------~~k~------lsl~~~rtL-el~ddvL~v~~Spdg-k 521 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGT---------------------QKKV------LSLKHTRTL-ELEDDVLCVSVSPDG-K 521 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcc---------------------ccee------eeeccceEE-eccccEEEEEEcCCC-c
Confidence 9999999999998621110000 0000 000000111 235679999999999 8
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
+|+++--|.++++|-+++.+ ....+.+|.-+|.||.++| ++.++++||.|.+|++|-+.- +.+-.++.+|+
T Consensus 522 ~LaVsLLdnTVkVyflDtlK--FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHd 592 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLK--FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHD 592 (888)
T ss_pred EEEEEeccCeEEEEEeccee--eeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhccc
Confidence 99999999999999999888 6778889999999999999 999999999999999999998 99999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
..|.++.|.|+.. +|.+++.|+.|+-||-.+. ..+..+.+|...|.+++.+|+|.+++
T Consensus 593 DSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vv------ 650 (888)
T KOG0306|consen 593 DSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVV------ 650 (888)
T ss_pred CceeEEEEcccce-eEEEecCcceEEeechhhh---------------hhheeeccchheeeeeEEcCCCCeEE------
Confidence 9999999999877 4669999999999998875 45778899999999999999999988
Q ss_pred CCCCCCCceEEEEecCC
Q 016547 344 CDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~ 360 (387)
+++.|.+|++|...+
T Consensus 651 --s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 651 --SSSHDKSIRLWERTD 665 (888)
T ss_pred --eccCCceeEeeeccC
Confidence 888899999999875
No 74
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.3e-31 Score=227.62 Aligned_cols=216 Identities=18% Similarity=0.333 Sum_probs=169.8
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS 104 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s 104 (387)
.+.+|.+.|++++|+|.++++|++|+.||+|++||+.+..... ....++..+.+|.. .|.+++|+|++ ++|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----NISDPIVHLQGHTK-KVGIVSFHPSAMNVLAS 143 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----ccCcceEEecCCCC-cEEEEEeCcCCCCEEEE
Confidence 3568999999999999777899999999999999997652111 11246778899987 79999999985 68999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|++|++||++++. ....+.+|...|.+++|+|++ .+
T Consensus 144 gs~DgtVrIWDl~tg~----------------------------------------~~~~l~~h~~~V~sla~spdG-~l 182 (493)
T PTZ00421 144 AGADMVVNVWDVERGK----------------------------------------AVEVIKCHSDQITSLEWNLDG-SL 182 (493)
T ss_pred EeCCCEEEEEECCCCe----------------------------------------EEEEEcCCCCceEEEEEECCC-CE
Confidence 9999999999997532 235667899999999999998 88
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCC-eeEEEecCCCCCeEEEee----CCCeEEEEEeccCCCCCCCCceEEe
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGS----ADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
|++++.|+.|++||+++++ ....+..|.+. +..+.|.+ ++..+++++ .|+.|++||+++. ..++...
T Consensus 183 Latgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~-----~~p~~~~ 254 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKM-----ASPYSTV 254 (493)
T ss_pred EEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCC-----CCceeEe
Confidence 9999999999999999887 56667777764 34678888 666666544 4799999999973 2344444
Q ss_pred ccc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 260 EGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 260 ~~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
..+ ...+....|++++..+++++..|+.|++||+...
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333 3456667889999865544446999999999875
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.5e-32 Score=233.68 Aligned_cols=248 Identities=20% Similarity=0.370 Sum_probs=210.1
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.....||.+.|+++++.. .+++|++|+.|.++++||..++ .+...+.+|.+ .|.++.. ...+++
T Consensus 242 ~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~s-tv~~~~~--~~~~~~ 305 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTS-SVRCLTI--DPFLLV 305 (537)
T ss_pred EeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCc-eEEEEEc--cCceEe
Confidence 334789999999999877 7899999999999999999999 89999999998 5777776 566788
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.|.+|++|+++++. .+..+.+|.++|.++... + .
T Consensus 306 sgs~D~tVkVW~v~n~~----------------------------------------~l~l~~~h~~~V~~v~~~--~-~ 342 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGA----------------------------------------CLNLLRGHTGPVNCVQLD--E-P 342 (537)
T ss_pred eccCCceEEEEeccCcc----------------------------------------eEEEeccccccEEEEEec--C-C
Confidence 99999999999998543 346677799999999998 3 6
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC-CceEEeccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGH 262 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~ 262 (387)
++++|+.|++|++||+.+++ ++..+.+|...|+++.+.+ . ..+++|+.|+.|++||+++ . +++..+.+|
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~------~~~c~~tl~~h 412 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRT------KRKCIHTLQGH 412 (537)
T ss_pred EEEEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCc------hhhhhhhhcCC
Confidence 89999999999999999888 8999999999999998865 3 9999999999999999998 6 899999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEec
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s 341 (387)
...+..+.+. ++ +|++++.|+.|++||.... ++...+.+ |...|+.+++. ...++
T Consensus 413 ~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~---------------~~~~~~~~~~~~~v~~l~~~--~~~il---- 468 (537)
T KOG0274|consen 413 TSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEG---------------ECLRTLEGRHVGGVSALALG--KEEIL---- 468 (537)
T ss_pred cccccccccc--cc-eeEeccccccEEEeecccC---------------ceeeeeccCCcccEEEeecC--cceEE----
Confidence 9999777764 34 4679999999999999986 34555666 67889888886 23344
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
+++.||++++||++ ++++.+.+-
T Consensus 469 ----~s~~~~~~~l~dl~------~~~~~~~l~ 491 (537)
T KOG0274|consen 469 ----CSSDDGSVKLWDLR------SGTLIRTLL 491 (537)
T ss_pred ----EEecCCeeEEEecc------cCchhhhhh
Confidence 45556999999999 677777663
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.2e-31 Score=234.98 Aligned_cols=295 Identities=19% Similarity=0.320 Sum_probs=227.5
Q ss_pred CCCcEEEEEecCCCCcEEEEec--CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 30 HPGEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
+...|.+|..+| ++..+|||+ .||.++||+.+.--.........-.+.+.....|.+ .|+|+.|+|||++||+|+.
T Consensus 12 ~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEECCCCCeEeeccC
Confidence 456799999999 999999999 899999999875533222222223467788888998 7999999999999999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
|+.|.+|+... ..... .........+.+.++....+.+|...|..++|+|++ .+|++
T Consensus 90 D~~v~iW~~~~-~~~~~---------------------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS 146 (942)
T KOG0973|consen 90 DRLVMIWERAE-IGSGT---------------------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVS 146 (942)
T ss_pred cceEEEeeecc-cCCcc---------------------cccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEE
Confidence 99999999874 10000 000011122445677788999999999999999998 89999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-----
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----- 262 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----- 262 (387)
++.|++|.+||.++.+ ....+.+|.+.|..+.|+| -|++||+-+.|++|++|++.+ ....+.+..+
T Consensus 147 ~s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFEESP 217 (942)
T ss_pred ecccceEEEEccccce--eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccc------ceeeEeeccchhhCC
Confidence 9999999999999996 7889999999999999999 999999999999999999776 5566655443
Q ss_pred -cceEEEEEEcCCCCeeEEEe-cC---CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC-----
Q 016547 263 -SAAVLCVQWSPDKSSVFGSS-AE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS----- 332 (387)
Q Consensus 263 -~~~i~~~~~~~~~~~ll~s~-~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 332 (387)
......+.|||||++|. +. +. -..+.|.+-.+. ..-..+.||..++..++|+|.
T Consensus 218 ~~T~f~RlSWSPDG~~la-s~nA~n~~~~~~~IieR~tW---------------k~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLA-SPNAVNGGKSTIAIIERGTW---------------KVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred CcceeeecccCCCcCeec-chhhccCCcceeEEEecCCc---------------eeeeeeecCCCceEEEEeChHHhccc
Confidence 24578999999999754 44 22 234666665443 345567899999999999982
Q ss_pred -C---------Ce-EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEeeecC
Q 016547 333 -D---------PW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP 387 (387)
Q Consensus 333 -~---------~~-l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~f~P 387 (387)
. .| ++| +|+.|++|.||... ..+++-.+. -....|.+++|+|
T Consensus 282 ~~ng~~~~~~~~y~i~A-------vgSqDrSlSVW~T~------~~RPl~vi~~lf~~SI~DmsWsp 335 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAA-------VGSQDRSLSVWNTA------LPRPLFVIHNLFNKSIVDMSWSP 335 (942)
T ss_pred cccCCccCCCcceEEEE-------EecCCccEEEEecC------CCCchhhhhhhhcCceeeeeEcC
Confidence 1 12 333 77888999999997 455555443 4567899999987
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=196.37 Aligned_cols=224 Identities=21% Similarity=0.322 Sum_probs=194.9
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
+....+..+.+ +|.++.|+.+|+|.++|+.|++|++|+...+
T Consensus 8 kr~~~l~~~qg-aV~avryN~dGnY~ltcGsdrtvrLWNp~rg------------------------------------- 49 (307)
T KOG0316|consen 8 KRLSILDCAQG-AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG------------------------------------- 49 (307)
T ss_pred hhceeeccccc-ceEEEEEccCCCEEEEcCCCceEEeeccccc-------------------------------------
Confidence 45567788887 7999999999999999999999999998643
Q ss_pred CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
.++.++.+|..+|..++.+.|+ ..|++|+.|..+.+||+.+++ ..+.+.+|.+.|+.++|+. +...+++|+.|
T Consensus 50 ---~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD 122 (307)
T KOG0316|consen 50 ---ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFNE-ESSVVASGSFD 122 (307)
T ss_pred ---ceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eeeecccccceeeEEEecC-cceEEEecccc
Confidence 4558889999999999999998 789999999999999999999 7889999999999999999 99999999999
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 316 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 316 (387)
..+++||.++.. .+|++.+......|.++..+.. .+++|+.||+++.||++.+.. ..
T Consensus 123 ~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l---------------~s- 179 (307)
T KOG0316|consen 123 SSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTL---------------SS- 179 (307)
T ss_pred ceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeeccee---------------eh-
Confidence 999999999754 6788888888889999998654 356999999999999998622 22
Q ss_pred eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547 317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC 383 (387)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 383 (387)
.-...+|+++.|+++++..+ .++.|+++++-|-. +|++++...+|.+.=+.+
T Consensus 180 -Dy~g~pit~vs~s~d~nc~L--------a~~l~stlrLlDk~------tGklL~sYkGhkn~eykl 231 (307)
T KOG0316|consen 180 -DYFGHPITSVSFSKDGNCSL--------ASSLDSTLRLLDKE------TGKLLKSYKGHKNMEYKL 231 (307)
T ss_pred -hhcCCcceeEEecCCCCEEE--------Eeeccceeeecccc------hhHHHHHhcccccceeee
Confidence 22345899999999999998 56677999999999 899999999998754433
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=219.66 Aligned_cols=273 Identities=19% Similarity=0.248 Sum_probs=219.4
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
.......|.+.|..+.|.+ +...|+||+.|..|++|++...+ .....++.|.-+ .|+.+.|.++++++
T Consensus 167 ~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g-~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLG-NITSIDFDSDNKHV 234 (459)
T ss_pred hhhhhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch----------hhhhhhhhccCC-CcceeeecCCCceE
Confidence 3445567999999999999 77889999999999999998772 134556777665 68999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|+.+++|++... +.+.++.+|++.|+++.|....
T Consensus 235 iAas~d~~~r~Wnvd~~----------------------------------------r~~~TLsGHtdkVt~ak~~~~~- 273 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSL----------------------------------------RLRHTLSGHTDKVTAAKFKLSH- 273 (459)
T ss_pred EeecCCCceeeeeccch----------------------------------------hhhhhhcccccceeeehhhccc-
Confidence 99999999999999754 3347788999999999998776
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
..+++|+.|.+|++||+.... +.+... ..+.+..|..+ ...+++|..|+.|++||.+. ..+..+...+
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~--C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~g 341 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAY--CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLG 341 (459)
T ss_pred cceeeccccchhhhhhhhhhh--eecccc-ccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecC
Confidence 459999999999999999866 444432 34556666654 56788999999999999998 7888888865
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
. .|+++..++++..++ +++.|..+.+.|++.......... .....+| ..+.+.|||++.|++
T Consensus 342 g-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~sA---------~g~k~as--DwtrvvfSpd~~Yva----- 403 (459)
T KOG0288|consen 342 G-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTFSA---------EGFKCAS--DWTRVVFSPDGSYVA----- 403 (459)
T ss_pred c-ceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEeec---------ccccccc--ccceeEECCCCceee-----
Confidence 5 899999999999876 668999999999998643322100 0111222 378999999999998
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhhhhhccCc--eEEEeeecC
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA--HVISCTSKP 387 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~v~~~~f~P 387 (387)
+||.||.|+||++. ++++...+..... .|++++|.|
T Consensus 404 ---AGS~dgsv~iW~v~------tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 404 ---AGSADGSVYIWSVF------TGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ---eccCCCcEEEEEcc------CceEEEEeccCCCCcceEEEEEcC
Confidence 89999999999999 7888777765444 599999987
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-31 Score=201.45 Aligned_cols=242 Identities=19% Similarity=0.365 Sum_probs=193.6
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC--E
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y 101 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~--~ 101 (387)
......|.+.|++++. ++.++|+|+.|-+|+|||+... .....+-.|.+ .|+++.|.+.-. .
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~------------~qlg~ll~Hag-sitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKR------------KQLGILLSHAG-SITALKFYPPLSKSH 99 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccch------------hhhcceecccc-ceEEEEecCCcchhh
Confidence 3344469999999997 5689999999999999999988 67777888887 799999998765 8
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
|++|+.||.|.+|+... +..+..+++|.+.|+.++.+|.+
T Consensus 100 LlS~sdDG~i~iw~~~~----------------------------------------W~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGS----------------------------------------WELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred eeeecCCCcEEEEEcCC----------------------------------------eEEeeeecccccccceeEecCCC
Confidence 99999999999999874 44557889999999999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
++.++.+.|+.+++||+-.++.-....+. ...+.+.|+| .|.+++.+..++ |-+|.+.+ ......+.
T Consensus 140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~w~~-~Gd~F~v~~~~~-i~i~q~d~------A~v~~~i~- 206 (362)
T KOG0294|consen 140 -KLALSVGGDQVLRTWNLVRGRVAFVLNLK---NKATLVSWSP-QGDHFVVSGRNK-IDIYQLDN------ASVFREIE- 206 (362)
T ss_pred -ceEEEEcCCceeeeehhhcCccceeeccC---CcceeeEEcC-CCCEEEEEeccE-EEEEeccc------HhHhhhhh-
Confidence 88999999999999999988843333332 2334599999 999998887665 88898887 55555544
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE--ccCCCeEEEE
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW--NASDPWTVVS 339 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~s 339 (387)
....+.++.|-..+. +++|++|+.|.+||.... .+...+.+|...|-++.+ .|++ ++++
T Consensus 207 ~~~r~l~~~~l~~~~--L~vG~d~~~i~~~D~ds~---------------~~~~~~~AH~~RVK~i~~~~~~~~-~~lv- 267 (362)
T KOG0294|consen 207 NPKRILCATFLDGSE--LLVGGDNEWISLKDTDSD---------------TPLTEFLAHENRVKDIASYTNPEH-EYLV- 267 (362)
T ss_pred ccccceeeeecCCce--EEEecCCceEEEeccCCC---------------ccceeeecchhheeeeEEEecCCc-eEEE-
Confidence 235677888876554 458999999999999873 346667899999999984 3444 4555
Q ss_pred ecCCCCCCCCCceEEEEecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~ 359 (387)
|.+.||.|+|||++
T Consensus 268 ------TaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 268 ------TASSDGFIKVWDID 281 (362)
T ss_pred ------EeccCceEEEEEcc
Confidence 55556999999998
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-31 Score=211.57 Aligned_cols=294 Identities=18% Similarity=0.314 Sum_probs=224.0
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCC-----CCCCeEEE-eccCCCceEEEEECCC
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT-----NSRPDLIL-TGHQDNAEFALAMCPT 98 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~-~~h~~~~v~~~~~~~~ 98 (387)
.....|.-+|.|++++| +..++.+++.||+|.=|++.+++....+.... ...+...- ++|.. .+.+++.++|
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k-eil~~avS~D 213 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK-EILTLAVSSD 213 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc-eeEEEEEcCC
Confidence 34456999999999999 88899999999999999999987543222210 11111111 47776 6889999999
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
|+||++|+.|..|.||+.++. +.+..+.+|.+.|.+++|-
T Consensus 214 gkylatgg~d~~v~Iw~~~t~----------------------------------------ehv~~~~ghr~~V~~L~fr 253 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL----------------------------------------EHVKVFKGHRGAVSSLAFR 253 (479)
T ss_pred CcEEEecCCCceEEEecCccc----------------------------------------chhhcccccccceeeeeee
Confidence 999999999999999999864 3446688999999999997
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
... ..+++++.|..|++|+++... .+..+.+|.+.|.+|.... .++.+-+|+.|+++++|++. ......
T Consensus 254 ~gt-~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~-------eesqli 322 (479)
T KOG0299|consen 254 KGT-SELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP-------EESQLI 322 (479)
T ss_pred cCc-cceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhc-ccceEEeccccceeEEEecc-------ccceee
Confidence 654 679999999999999998877 6778889999999999887 78888888899999999995 455567
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+.++.+.+-|++|-.+.. |++|+.+|.|.+|++.+..............+. + ....+..+|++++..|..+.++
T Consensus 323 frg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~-~--~~~~~~~Witsla~i~~sdL~a- 396 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE-L--DPVNGNFWITSLAVIPGSDLLA- 396 (479)
T ss_pred eeCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccCC-c--cccccccceeeeEecccCceEE-
Confidence 788899999999988876 569999999999999884332221111000000 0 0112335899999999776555
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.+|.|++|.+.+-.. .-+++..+. ..+.|++++|++
T Consensus 397 -------sGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 397 -------SGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred -------ecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence 788889999999984210 134555665 678899999874
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.4e-31 Score=230.22 Aligned_cols=254 Identities=22% Similarity=0.402 Sum_probs=220.1
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCCCCEEEEecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
|...+.+..|. ..++++++.|++|++||..++ ..+.. +.+|.+ .|.++++...+.+|++|+.|
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~------------~~i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D 270 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNG------------YLILTRLVGHFG-GVWGLAFPSGGDKLVSGSTD 270 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccc------------eEEEeeccCCCC-CceeEEEecCCCEEEEEecC
Confidence 56778888876 468999999999999999998 56666 999998 69999998878999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
.++++||+.++. +...+.+|.+.|.++...+ ..+++|
T Consensus 271 ~t~rvWd~~sg~----------------------------------------C~~~l~gh~stv~~~~~~~---~~~~sg 307 (537)
T KOG0274|consen 271 KTERVWDCSTGE----------------------------------------CTHSLQGHTSSVRCLTIDP---FLLVSG 307 (537)
T ss_pred CcEEeEecCCCc----------------------------------------EEEEecCCCceEEEEEccC---ceEeec
Confidence 999999987654 4478889999999998864 468889
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
+.|.+|++|++.++. .+..+.+|..+|+++..+ +.++++|+.|++|++||..+ ++++.++.+|...|.+
T Consensus 308 s~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~s 376 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYS 376 (537)
T ss_pred cCCceEEEEeccCcc--eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEE
Confidence 999999999999888 677777799999999984 78999999999999999998 9999999999999999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
+.+.+. . .+.+|+.|+.|++||+++.. +++..+.+|...+..+.+. ++.|+ +++
T Consensus 377 l~~~~~-~-~~~Sgs~D~~IkvWdl~~~~--------------~c~~tl~~h~~~v~~l~~~--~~~Lv--------s~~ 430 (537)
T KOG0274|consen 377 LIVDSE-N-RLLSGSLDTTIKVWDLRTKR--------------KCIHTLQGHTSLVSSLLLR--DNFLV--------SSS 430 (537)
T ss_pred EEecCc-c-eEEeeeeccceEeecCCchh--------------hhhhhhcCCcccccccccc--cceeE--------ecc
Confidence 988775 4 35699999999999999852 3567788999888777664 55666 788
Q ss_pred CCceEEEEecCCCcccccchhhhhhhc-cCceEEEeee
Q 016547 349 GGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTS 385 (387)
Q Consensus 349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f 385 (387)
.|++|++||.. .+++++++.+ |...|..+++
T Consensus 431 aD~~Ik~WD~~------~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 431 ADGTIKLWDAE------EGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred ccccEEEeecc------cCceeeeeccCCcccEEEeec
Confidence 88999999999 8999999998 6788888776
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-31 Score=211.69 Aligned_cols=229 Identities=22% Similarity=0.412 Sum_probs=194.2
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EP 100 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~ 100 (387)
....++.+|.++=+.++|++...-.|++|+.|++|++||+....... ....+...+.+|++ .|..++|++- ..
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-----~~~~p~~~~~~h~~-~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-----KVVDPKTIFSGHED-VVEDVAWHPLHED 241 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----ccccceEEeecCCc-ceehhhccccchh
Confidence 34457889999889999999888899999999999999998764321 12257788999998 7999999994 56
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.+++++.|+.+.|||++.. +.++.....+|..+|.|++|+|.
T Consensus 242 lF~sv~dd~~L~iwD~R~~--------------------------------------~~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSN--------------------------------------TSKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred hheeecCCCeEEEEEcCCC--------------------------------------CCCCcccccccCCceeEEEeCCC
Confidence 7889999999999999852 12233566789999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC--------CC
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------GV 252 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------~~ 252 (387)
++.+||+|+.|++|.+||+|.... .+..+.+|...|.++.|+|.....||+++.|+.+.+||+...... +.
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP 362 (422)
T ss_pred CCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC
Confidence 989999999999999999999875 577888999999999999988899999999999999999864221 11
Q ss_pred CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.+++..-.+|...|..+.|+|+.++++++.++|+.+.||++..
T Consensus 363 pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 3345666789999999999999999999999999999999985
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-30 Score=203.00 Aligned_cols=286 Identities=15% Similarity=0.186 Sum_probs=215.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|++.|+|+.|+. ++.+||||+.+|.|+||+..++ .....+...-+ .+.=+.|+|.+..|+.
T Consensus 100 ~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg------------~~~~~~~~e~~-dieWl~WHp~a~illA 165 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTG------------GEQWKLDQEVE-DIEWLKWHPRAHILLA 165 (399)
T ss_pred eEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccC------------ceEEEeecccC-ceEEEEecccccEEEe
Confidence 45669999999999999 9999999999999999999998 44444543333 4678999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCC--ceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSG--SIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSS 181 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 181 (387)
|+.||.+-+|.+.++.....+.-.......+.. ..........++.+..|+..+..++..+.. ...+..++.++..+
T Consensus 166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 999999999999885332222221111111100 011112223478889999999988877763 23457788888887
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEee--------ccCCCeeEEEecCC--CCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
..++.|+.++.+++-+..+++ .+.... .+...+.++.+.|. .-.+.|+|+.||+|.|||+..
T Consensus 246 -~~~~~g~~e~~~~~~~~~sgK--Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----- 317 (399)
T KOG0296|consen 246 -STLTKGNSEGVACGVNNGSGK--VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----- 317 (399)
T ss_pred -ceeEeccCCccEEEEccccce--EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-----
Confidence 789999999999998887776 222222 34444555555442 456889999999999999997
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
.+..+.+ .|+.+|..+.|-+ ..+|+ +++.+|.|+.||.+++ ++++.+.||...|.+++.+|
T Consensus 318 -~~~R~~c-~he~~V~~l~w~~-t~~l~-t~c~~g~v~~wDaRtG---------------~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 318 -STLRHIC-EHEDGVTKLKWLN-TDYLL-TACANGKVRQWDARTG---------------QLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred -chhheec-cCCCceEEEEEcC-cchhe-eeccCceEEeeecccc---------------ceEEEEecCchheeEEEEcC
Confidence 4544444 4899999999998 56554 8888999999999997 67888999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.+.++ |+|.|++.+||++.
T Consensus 379 ~~~~vv--------T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 379 QKRLVV--------TVSDDNTALVFEVP 398 (399)
T ss_pred CCcEEE--------EecCCCeEEEEecC
Confidence 988776 77777999999875
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-30 Score=218.38 Aligned_cols=256 Identities=18% Similarity=0.362 Sum_probs=212.9
Q ss_pred EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEc
Q 016547 37 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 116 (387)
Q Consensus 37 i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 116 (387)
+.|+. .+.||+|.. ..|++|+..++ ........+.+ .|+++.|+++|++|++|..+|.|.|||.
T Consensus 183 ldWss--~n~laValg-~~vylW~~~s~------------~v~~l~~~~~~-~vtSv~ws~~G~~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 183 LDWSS--ANVLAVALG-QSVYLWSASSG------------SVTELCSFGEE-LVTSVKWSPDGSHLAVGTSDGTVQIWDV 246 (484)
T ss_pred hhccc--CCeEEEEec-ceEEEEecCCC------------ceEEeEecCCC-ceEEEEECCCCCEEEEeecCCeEEEEeh
Confidence 44543 457777754 47999999988 33334444444 7999999999999999999999999998
Q ss_pred CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCCCeeEEEecCCCeEE
Q 016547 117 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLI 195 (387)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 195 (387)
.+.... ..+.+ |...|.+++|.. ..+.+|+.++.|.
T Consensus 247 ~~~k~~----------------------------------------~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 247 KEQKKT----------------------------------------RTLRGSHASRVGSLAWNS---SVLSSGSRDGKIL 283 (484)
T ss_pred hhcccc----------------------------------------ccccCCcCceeEEEeccC---ceEEEecCCCcEE
Confidence 764332 44455 999999999983 5799999999999
Q ss_pred EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547 196 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275 (387)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (387)
.+|++..+.... ...+|...|..++|++ ++.++|+|+.|+.+.|||... ..++..+..|...|.+++|+|-.
T Consensus 284 ~~dvR~~~~~~~-~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 284 NHDVRISQHVVS-TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred EEEEecchhhhh-hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCCCc
Confidence 999998874322 5788999999999999 999999999999999999977 78899999999999999999988
Q ss_pred CeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceE
Q 016547 276 SSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL 353 (387)
Q Consensus 276 ~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i 353 (387)
+.|||+|+ .|+.|++||...+.. +.. ..-...|.+|.|++..+-++.+ -|..++.|
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~---------------i~~-vdtgsQVcsL~Wsk~~kEi~st------hG~s~n~i 413 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGAR---------------IDS-VDTGSQVCSLIWSKKYKELLST------HGYSENQI 413 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcE---------------ecc-cccCCceeeEEEcCCCCEEEEe------cCCCCCcE
Confidence 88999876 699999999997522 111 2345689999999999888765 46677899
Q ss_pred EEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 354 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 354 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.||++. +...+..+.+|...|..++++|
T Consensus 414 ~lw~~p------s~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 414 TLWKYP------SMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred EEEecc------ccceeeeecCCcceeEEEEECC
Confidence 999999 7889999999999999999998
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.5e-31 Score=232.49 Aligned_cols=261 Identities=22% Similarity=0.374 Sum_probs=209.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccc-------cCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAV-------LGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
.+...|.+.|+|+.|+| +|++||+|++|+.|.||+.... ..... .....++....+.+|.. .|..++|+|
T Consensus 63 ~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp 139 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSP 139 (942)
T ss_pred eeeccccCceeEEEECC-CCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCC-ccceeccCC
Confidence 45557999999999999 9999999999999999998841 11111 22334568889999998 689999999
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
++.+|++++.|++|.+|+..+ ++.+..+.+|...|..+.|
T Consensus 140 ~~~~lvS~s~DnsViiwn~~t----------------------------------------F~~~~vl~~H~s~VKGvs~ 179 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKT----------------------------------------FELLKVLRGHQSLVKGVSW 179 (942)
T ss_pred CccEEEEecccceEEEEcccc----------------------------------------ceeeeeeecccccccceEE
Confidence 999999999999999999875 3455888999999999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCCCCeEEEeeC----CCeEEEEEeccC
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNL 247 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~ 247 (387)
.|-| ++|++-+.|++|++|++.+.. ..+.+.. ....+..+.|+| +|.+|++... -..+.|.+..+
T Consensus 180 DP~G-ky~ASqsdDrtikvwrt~dw~--i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t- 254 (942)
T KOG0973|consen 180 DPIG-KYFASQSDDRTLKVWRTSDWG--IEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT- 254 (942)
T ss_pred CCcc-CeeeeecCCceEEEEEcccce--eeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC-
Confidence 9999 899999999999999976643 3333322 234578999999 9999998754 34688888877
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCC--------C-------Ce-eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~-------~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 311 (387)
++.-..+-+|.+++.++.|+|. | .| ++|+|+.|+.|.||.......
T Consensus 255 -----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP------------- 316 (942)
T KOG0973|consen 255 -----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP------------- 316 (942)
T ss_pred -----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-------------
Confidence 8888889999999999999873 1 11 789999999999999865321
Q ss_pred eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
++..+.-....|.+|+|+|||-.|+ .++.||+|.+..+..
T Consensus 317 -l~vi~~lf~~SI~DmsWspdG~~Lf--------acS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 -LFVIHNLFNKSIVDMSWSPDGFSLF--------ACSLDGTVALIHFEE 356 (942)
T ss_pred -hhhhhhhhcCceeeeeEcCCCCeEE--------EEecCCeEEEEEcch
Confidence 2222333567899999999998776 455669999999984
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-32 Score=224.53 Aligned_cols=256 Identities=19% Similarity=0.307 Sum_probs=216.4
Q ss_pred cCCCcEE---EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 29 IHPGEVN---RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 29 ~h~~~v~---~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.|...|. .+....+++++|.||+.||.|++|++........ ......++.|.+ .|+.+....+++.|+++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsD-WVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSD-WVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHh-HHhhHHhhcCCCceEEe
Confidence 3555666 6666667889999999999999999887632211 124678889998 89999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE-ccCCCee
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF-CPSSAQE 184 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~ 184 (387)
|.|-+|++|+..... ..++.++..|++-|.|+++ .++. .+
T Consensus 92 SsDtTVK~W~~~~~~--------------------------------------~~c~stir~H~DYVkcla~~ak~~-~l 132 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDN--------------------------------------TFCMSTIRTHKDYVKCLAYIAKNN-EL 132 (735)
T ss_pred cCCceEEEeecccCc--------------------------------------chhHhhhhcccchheeeeecccCc-ee
Confidence 999999999987532 1234677899999999999 5665 89
Q ss_pred EEEecCCCeEEEEEccCCCC--------ceeEEee-ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 185 FCSVGDDSCLILWDARVGTS--------PVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~--------~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+++|+-|+.|.+||+.++.. .....+. ++..+|++++.++ .+..+++|+..+.+++||.++ .+.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt------~~k 205 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT------CKK 205 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc------ccc
Confidence 99999999999999997632 1112223 7888999999999 899999999999999999999 899
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
+..+++|...|..+..++||..++ +++.||+|++||+... .++.++..|...|.++..+|+-.+
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc---------------ceeeeEEeccCceEEEeeCCCcce
Confidence 999999999999999999999865 9999999999999875 567888999999999999999998
Q ss_pred EEEEecCCCCCCCCCceEEEEecCCC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
+. +|+.||.|..=|+++.
T Consensus 270 vY--------sG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 270 VY--------SGGRDGNIYRTDLRNP 287 (735)
T ss_pred EE--------ecCCCCcEEecccCCc
Confidence 88 8999999999999863
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-31 Score=211.70 Aligned_cols=242 Identities=21% Similarity=0.307 Sum_probs=201.3
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d 108 (387)
..+.|.++.|-. +|++||.|...|.|+|+|..+. ..++.+.+|+. +|..+.|+|+ ++.|++|+.|
T Consensus 67 Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r------------~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 67 FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR------------VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred hccceeEEEeec-CCeEEEccCCcCcEEEeccccH------------HHHHHHhhccC-ceeEEEecccCCeEEEecCCC
Confidence 567889999888 9999999999999999996664 56778999998 8999999995 5567889999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
+.+++||+.+... ...+.+|++-|.|.+|+|..+.++++|
T Consensus 133 ~v~k~~d~s~a~v----------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 133 KVVKYWDLSTAYV----------------------------------------QAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred ceEEEEEcCCcEE----------------------------------------EEEecCCcceeEeeccccCCCeEEEec
Confidence 9999999986421 256789999999999999987899999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
+.||.|++||++... ..+ ....|..+|..+.+-| .+.++++++ .+.|++||+.+. ++.+.....|...|+|
T Consensus 173 sYDg~vrl~DtR~~~-~~v-~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G-----~qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLT-SRV-VELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTG-----GQLLTSMFNHNKTVTC 243 (487)
T ss_pred CCCceEEEEEeccCC-cee-EEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCC-----ceehhhhhcccceEEE
Confidence 999999999999875 233 3447999999999999 888988876 457999999973 5666666669999999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
+.+..++..|+ +++-|+.+++||+.+. +.+.. -.-.++|.+++.+|+++.++ .|.
T Consensus 244 L~l~s~~~rLl-S~sLD~~VKVfd~t~~---------------Kvv~s-~~~~~pvLsiavs~dd~t~v--------iGm 298 (487)
T KOG0310|consen 244 LRLASDSTRLL-SGSLDRHVKVFDTTNY---------------KVVHS-WKYPGPVLSIAVSPDDQTVV--------IGM 298 (487)
T ss_pred EEeecCCceEe-ecccccceEEEEccce---------------EEEEe-eecccceeeEEecCCCceEE--------Eec
Confidence 99999998765 9999999999997764 23333 24567999999999999888 677
Q ss_pred CCceEEEEecC
Q 016547 349 GGGTLQIWRMS 359 (387)
Q Consensus 349 ~dg~i~iw~~~ 359 (387)
.||.+.+=+..
T Consensus 299 snGlv~~rr~~ 309 (487)
T KOG0310|consen 299 SNGLVSIRRRE 309 (487)
T ss_pred ccceeeeehhh
Confidence 77888777443
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=205.92 Aligned_cols=264 Identities=17% Similarity=0.319 Sum_probs=216.3
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
..|.++...| ....++||+.|..+.++|.... +.+..+.||.. .|+.+.++|+...+++++.|..|
T Consensus 220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSN------------QILATLKGHTK-KITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeecC-CCCcceecCCCCceEEEecchh------------hhhhhccCcce-EEEEEEeccchhheeecCCcceE
Confidence 5688888888 4788999999999999999988 88899999998 79999999999999999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
++|...... .......|.++|+.+..+|.| .+|++++.|
T Consensus 286 ~vws~~~~s----------------------------------------~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d 324 (506)
T KOG0289|consen 286 RVWSVPLSS----------------------------------------EPTSSRPHEEPVTGLSLHPTG-EYLLSASND 324 (506)
T ss_pred Eeecccccc----------------------------------------CccccccccccceeeeeccCC-cEEEEecCC
Confidence 999986432 124567899999999999999 889999999
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 271 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (387)
|+..+.|++++.......-....-.+++.+|+| ||.+|.+|..||.|++||+.+ ...+..|.+|.++|..++|
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEe
Confidence 999999999998422222222334589999999 999999999999999999999 7788999999999999999
Q ss_pred cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547 272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG 350 (387)
Q Consensus 272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d 350 (387)
+.+|-+ ||++++|+.|++||+++.... .++. ....++.++.|.+.|.+|++ +|.|
T Consensus 398 sENGY~-Lat~add~~V~lwDLRKl~n~---------------kt~~l~~~~~v~s~~fD~SGt~L~~--------~g~~ 453 (506)
T KOG0289|consen 398 SENGYW-LATAADDGSVKLWDLRKLKNF---------------KTIQLDEKKEVNSLSFDQSGTYLGI--------AGSD 453 (506)
T ss_pred ccCceE-EEEEecCCeEEEEEehhhccc---------------ceeeccccccceeEEEcCCCCeEEe--------ecce
Confidence 999976 679999999999999986321 1111 12237999999999999984 4444
Q ss_pred ceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 351 GTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 351 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
=.|++++-.. ++..++.++..|.+..+.+.|
T Consensus 454 l~Vy~~~k~~----k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 454 LQVYICKKKT----KSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred eEEEEEeccc----ccceeeehhhhcccccceeee
Confidence 5555555332 246677888888888887777
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.3e-31 Score=227.98 Aligned_cols=240 Identities=22% Similarity=0.468 Sum_probs=200.4
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSV 111 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i 111 (387)
.+..++|.....++|||++..|.|.+||+.... ..+.+..+..|+. .+++++|++. ..+|++|+.||.|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~---------rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~v 158 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI---------RNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTV 158 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc---------cchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceE
Confidence 456788888788999999999999999998731 1256678899997 6899999985 5678999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
++||++.... ..++.+..+.|.+|+|+|..++.|+++...
T Consensus 159 K~~DlR~~~S----------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 159 KCWDLRSKKS----------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred EEEeeecccc----------------------------------------cccccccchhhhceeeccCCCceEEEecCC
Confidence 9999985432 245566788999999999888999999999
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 271 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (387)
|.+.+||++.... +...+.+|.++|.|+.|+| ++.+||+|+.|+.|+|||+.... ..++.++. ...++.++.|
T Consensus 199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~----~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR----AKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred ceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC----ccceeEEe-ecceeeeeee
Confidence 9999999998774 5677889999999999999 99999999999999999998632 45555665 3578999999
Q ss_pred cCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 272 SPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 272 ~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
-|..++.||+++ .|-.|+|||++.+-. ...++..|...++.++|......++.+||.|
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYI--------------P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYI--------------PYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccc--------------cceeeeccCccccceeccCCCceeeEeecCc
Confidence 999999898887 477899999997522 3566789999999999988667777766666
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.1e-29 Score=189.57 Aligned_cols=257 Identities=19% Similarity=0.320 Sum_probs=209.7
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
+.+.....+|.+.|-.++|.|...+++++++.|.+|++||+... ++........++ .-+.|+|+|.
T Consensus 54 ~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~------------k~~~~i~~~~en--i~i~wsp~g~ 119 (313)
T KOG1407|consen 54 FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG------------KCTARIETKGEN--INITWSPDGE 119 (313)
T ss_pred hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC------------cEEEEeeccCcc--eEEEEcCCCC
Confidence 44455667899999999999999999999999999999999999 677666665553 3799999999
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
+++.++.|..|.+.|.++.+.... ....-.+..+.|+-+
T Consensus 120 ~~~~~~kdD~it~id~r~~~~~~~-----------------------------------------~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYKIVNE-----------------------------------------EQFKFEVNEISWNNS 158 (313)
T ss_pred EEEEecCcccEEEEEecccceeeh-----------------------------------------hcccceeeeeeecCC
Confidence 999999999999999986433211 122446778899866
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
+ .+|+.....|+|.|.....-+ .+..+..|.....||.|+| +|++||+|+.|..+.+||+.. ..+++.+.
T Consensus 159 n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E------LiC~R~is 228 (313)
T KOG1407|consen 159 N-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE------LICERCIS 228 (313)
T ss_pred C-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEECC-CCceEeeccccceeeccChhH------hhhheeec
Confidence 6 666666667999999887655 6788899999999999999 999999999999999999998 88999999
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
.++-+|..+.|+-+|++ ||++++|-.|-|=+++++.+. .. ..+.++...++|+|....|+.+|
T Consensus 229 RldwpVRTlSFS~dg~~-lASaSEDh~IDIA~vetGd~~---------------~e-I~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHDGRM-LASASEDHFIDIAEVETGDRV---------------WE-IPCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred cccCceEEEEeccCcce-eeccCccceEEeEecccCCeE---------------EE-eeccCCceeEEecCCCceeeEEe
Confidence 99999999999999995 799999999999999986442 21 34677889999999888777776
Q ss_pred cCCC-CCCCCCceEEEEecC
Q 016547 341 SDDC-DSTGGGGTLQIWRMS 359 (387)
Q Consensus 341 s~d~-~tg~~dg~i~iw~~~ 359 (387)
++-- -+.-..|+|++|-+.
T Consensus 292 ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 292 DDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCCCccccccceeEEecCC
Confidence 5420 022344888888765
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.6e-30 Score=222.51 Aligned_cols=263 Identities=17% Similarity=0.310 Sum_probs=183.9
Q ss_pred EEe-ccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCC--------------cccCCCC---CCceecc
Q 016547 81 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA--------------TAKSAGS---SGSIIKQ 142 (387)
Q Consensus 81 ~~~-~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--------------~~~~~~~---~~~~~~~ 142 (387)
.+. .|.+ .|+++.|++||+|||+|+.|+.|+||.+............ .+..... .......
T Consensus 261 e~~~ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 445 7777 7999999999999999999999999998762211000000 0000000 0000000
Q ss_pred CCCCCCCCCCC---CCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeE
Q 016547 143 SPKPGDGNDKA---ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 219 (387)
Q Consensus 143 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 219 (387)
..........+ .-.-..+++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++...+ ++..+ .|..-|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence 00111111111 1122446788899999999999999875 89999999999999999777 67776 59999999
Q ss_pred EEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547 220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 299 (387)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 299 (387)
++|+|.|.++|++|+.||.||||++.. ..+........-|++++|.|+|++ .+.|+.+|.+++|+.....-.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEE
Confidence 999999999999999999999999985 455555555688999999999997 458999999999999874322
Q ss_pred eccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc
Q 016547 300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 378 (387)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 378 (387)
... ... ...........|+++.|.|...- ++ +.+.|..|||||.+ +..++..++|+..
T Consensus 487 ~~~-~I~------~~~~Kk~~~~rITG~Q~~p~~~~~vL--------VTSnDSrIRI~d~~------~~~lv~KfKG~~n 545 (712)
T KOG0283|consen 487 SDF-HIR------LHNKKKKQGKRITGLQFFPGDPDEVL--------VTSNDSRIRIYDGR------DKDLVHKFKGFRN 545 (712)
T ss_pred Eee-eEe------eccCccccCceeeeeEecCCCCCeEE--------EecCCCceEEEecc------chhhhhhhccccc
Confidence 111 000 00000111228999999987654 55 34556999999998 6777888876654
No 92
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.6e-29 Score=193.08 Aligned_cols=280 Identities=19% Similarity=0.344 Sum_probs=208.9
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEe
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSG 105 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~ 105 (387)
.+|.+-|+|+.|.+ .|+.+|||+.|++|+|||.+.. .....+....+.|.+ .|..+.|.+ -|+.+|+|
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~--------s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSD--------SGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATC 79 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCC--------CCceEEeeeEEecCC-cEEEEEecCccccceEEEE
Confidence 37999999999999 9999999999999999998655 234567778899998 578999965 48999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Cee
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE 184 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~ 184 (387)
+.|+++.||.-....... .........++......|+++.|.|.. +-.
T Consensus 80 S~Drtv~iWEE~~~~~~~-------------------------------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEA-------------------------------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred ecCCceeeeeeccccccc-------------------------------ccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 999999999864221110 112334456677778899999999962 267
Q ss_pred EEEecCCCeEEEEEccCCC----CceeEE-------eeccCCCeeEEEecCC--CCCeEEEeeCC-----CeEEEEEecc
Q 016547 185 FCSVGDDSCLILWDARVGT----SPVIKV-------EKAHDADLHCVDWNPL--DDNLILTGSAD-----NSVRMFDRRN 246 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~----~~~~~~-------~~~~~~~i~~~~~~~~--~~~~l~~~~~d-----g~i~~~d~~~ 246 (387)
+++++.||.++||+.-..- .+.... ...+..+..|+.|+|. ...+||+|+.+ +.+.||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9999999999999865421 111112 2246667889999873 24688888876 5788887765
Q ss_pred CCCCCCCCceEEeccccceEEEEEEcCCC---CeeEEEecCCCeEEEEeCCCCCceeccCC-----CCCCCCceeeeeec
Q 016547 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGP-----RTTNYPAGLFFQHA 318 (387)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 318 (387)
..+. ...+.++.+|..+|+.++|.|+- -+++|+++.|| |+||.+........+.. .....+...+..+.
T Consensus 209 ~~rK--w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 209 NGRK--WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred Ccce--eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 3210 45667788999999999999973 34789999999 99999986432222111 11224456677788
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.|.+.|..+.|+-.|..|. +.|.||.||+|..+
T Consensus 286 ~H~~~VWrv~wNmtGtiLs--------StGdDG~VRLWkan 318 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILS--------STGDDGCVRLWKAN 318 (361)
T ss_pred CCCCceEEEEEeeeeeEEe--------ecCCCceeeehhhh
Confidence 9999999999999887666 77778999999876
No 93
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6.5e-29 Score=216.79 Aligned_cols=239 Identities=15% Similarity=0.200 Sum_probs=174.1
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-EE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VL 103 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l~ 103 (387)
..+.+|.+.|.+++|+|.++++||+|+.||+|+|||+.+...... ....+...+.+|.. .|.+++|+|++.. |+
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i~~p~~~L~gH~~-~V~sVaf~P~g~~iLa 142 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EIKDPQCILKGHKK-KISIIDWNPMNYYIMC 142 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----ccccceEEeecCCC-cEEEEEECCCCCeEEE
Confidence 456689999999999996688999999999999999976421100 00134567888987 7999999999876 57
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|++|++||++++... ..+. |...|.+++|+|+| .
T Consensus 143 SgS~DgtIrIWDl~tg~~~----------------------------------------~~i~-~~~~V~SlswspdG-~ 180 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRA----------------------------------------FQIN-MPKKLSSLKWNIKG-N 180 (568)
T ss_pred EEeCCCeEEEEECCCCcEE----------------------------------------EEEe-cCCcEEEEEECCCC-C
Confidence 8999999999999864321 2222 45679999999999 7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEE-----EecCCCCCeEEEeeCCC----eEEEEEeccCCCCCCCC
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV-----DWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~ 254 (387)
+|++++.|+.|++||+++++ ....+.+|.+.+.+. .|++ ++.++++++.|+ .|+|||++.. ..
T Consensus 181 lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~-----~~ 252 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNT-----TS 252 (568)
T ss_pred EEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCC-----CC
Confidence 89999999999999999887 566778888765433 3457 788888877764 7999999963 45
Q ss_pred ceEEec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 255 PINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 255 ~~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
++..+. .+.+.+......+++. ++++|+.|+.|++|++..... ..+.. ..+..++.+++|.|+
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~-------------~~l~~-~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI-------------RKVNE-YKSCSPFRSFGFLPK 317 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCcE-------------Eeecc-cccCCCccceEEccc
Confidence 555443 2233333333344465 577999999999999976421 11222 225567788888886
Q ss_pred C
Q 016547 333 D 333 (387)
Q Consensus 333 ~ 333 (387)
.
T Consensus 318 r 318 (568)
T PTZ00420 318 Q 318 (568)
T ss_pred c
Confidence 4
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=222.14 Aligned_cols=277 Identities=14% Similarity=0.265 Sum_probs=213.7
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--ceEEEEECC-CCCEEEEecC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCP-TEPYVLSGGK 107 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~-~~~~l~s~~~ 107 (387)
.....+|.-.+ +-..++.++.. .++|+.+....... ++.......... .+..+.|.. +.++|++++.
T Consensus 39 k~~~nAIs~nr-~~~qiv~AGrs-~lklyai~~~~~~~--------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 39 KAKANAISVNR-DINQIVVAGRS-LLKLYAINPNDFSE--------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred ccccceEeecC-CcceeEEeccc-ceeeEeeCcccCCc--------ceeeecccccceeeehhhcccccchhhhheeecC
Confidence 45667777777 55566666654 67888776542111 111111111110 134567764 4678999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
.|.|.+||+.... ..+.+..+..|...++++.|++..+++|++
T Consensus 109 nG~i~vWdlnk~~-------------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliS 151 (839)
T KOG0269|consen 109 NGVISVWDLNKSI-------------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILIS 151 (839)
T ss_pred CCcEEEEecCccc-------------------------------------cchhhhHhhhhccceeeeeeccCCccEEEe
Confidence 9999999997521 123346788999999999999999999999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 267 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 267 (387)
|++||+|++||++..+ ....+.+....|+.++|+|..++.|+++.+.|.+++||+|.+ .++...+.+|.++|.
T Consensus 152 GSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVL 224 (839)
T ss_pred cCCCceEEEEeeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceE
Confidence 9999999999999887 345555677889999999988999999999999999999985 678889999999999
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg 347 (387)
|+.|+|++.+ ||+|+.|+.|+|||+...... ...+. ....+|..+.|-|..++.+++|+ -
T Consensus 225 c~nwhPnr~~-lATGGRDK~vkiWd~t~~~~~-------------~~~tI-nTiapv~rVkWRP~~~~hLAtcs-----m 284 (839)
T KOG0269|consen 225 CLNWHPNREW-LATGGRDKMVKIWDMTDSRAK-------------PKHTI-NTIAPVGRVKWRPARSYHLATCS-----M 284 (839)
T ss_pred EEeecCCCce-eeecCCCccEEEEeccCCCcc-------------ceeEE-eecceeeeeeeccCccchhhhhh-----c
Confidence 9999997774 799999999999999864322 11111 12358999999999999999884 4
Q ss_pred CCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 348 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 348 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
..|-.|+|||++. ..-+..++..|...++.++|.
T Consensus 285 v~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 285 VVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred cccceEEEEeecc-----ccccceeeeccCccccceecc
Confidence 5679999999995 356778899999999988874
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=198.57 Aligned_cols=236 Identities=19% Similarity=0.324 Sum_probs=182.8
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
....+..|.. ++.+-+|++||.++++|+.|.+|++.|++......... .+...+..
T Consensus 104 Et~ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~-----------------------em~~~~~q 159 (430)
T KOG0640|consen 104 ETKYLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPK-----------------------EMISGDTQ 159 (430)
T ss_pred ceEEEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh-----------------------hhccCCcc
Confidence 3456778887 78999999999999999999999999997421111000 00000111
Q ss_pred CC-CCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 158 SV-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 158 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
.. -.++++..|.++|+++.|+|.. .+|++++.|++|+++|+................+|.++.|+| .|.+|++|...
T Consensus 160 a~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdH 237 (430)
T KOG0640|consen 160 ARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDH 237 (430)
T ss_pred cCCceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCC
Confidence 11 2457788999999999999998 899999999999999997644211112223456899999999 99999999999
Q ss_pred CeEEEEEeccCCCCCCCCceEEe---ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCcee
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 313 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 313 (387)
..+++||+.+ .++...- ..|.+.|+++.+++.++ |.++++.||.|++||--.. .+
T Consensus 238 p~~rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~---------------rC 295 (430)
T KOG0640|consen 238 PTLRLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSN---------------RC 295 (430)
T ss_pred CceeEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccH---------------HH
Confidence 9999999998 6665544 36889999999999999 6789999999999997664 22
Q ss_pred eeee-ccCCC-CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547 314 FFQH-AGHRD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 375 (387)
Q Consensus 314 ~~~~-~~~~~-~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 375 (387)
+.++ ..|.+ .|.+..|..+++|++ +.|.|..+++|.+. ++.++.+..|
T Consensus 296 v~t~~~AH~gsevcSa~Ftkn~kyiL--------sSG~DS~vkLWEi~------t~R~l~~YtG 345 (430)
T KOG0640|consen 296 VRTIGNAHGGSEVCSAVFTKNGKYIL--------SSGKDSTVKLWEIS------TGRMLKEYTG 345 (430)
T ss_pred HHHHHhhcCCceeeeEEEccCCeEEe--------ecCCcceeeeeeec------CCceEEEEec
Confidence 3332 34544 799999999999999 88999999999999 7777776654
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1e-30 Score=201.33 Aligned_cols=245 Identities=16% Similarity=0.275 Sum_probs=207.3
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCCEEEEe
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
+.-|.++|.|+.|+. +..+||+|+.||.|++|.++++ .+++.+. .|+. .|+|+.|+.|+..++++
T Consensus 259 fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG------------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~ 324 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETG------------QCLRRFDRAHTK-GVTCLSFSRDNSQILSA 324 (508)
T ss_pred eeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecc------------hHHHHhhhhhcc-CeeEEEEccCcchhhcc
Confidence 445899999999999 8899999999999999999999 6777676 7877 58999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|.++++.-+..+ +.+..+++|+.-|+...|.++| ..+
T Consensus 325 sfD~tvRiHGlKSG----------------------------------------K~LKEfrGHsSyvn~a~ft~dG-~~i 363 (508)
T KOG0275|consen 325 SFDQTVRIHGLKSG----------------------------------------KCLKEFRGHSSYVNEATFTDDG-HHI 363 (508)
T ss_pred cccceEEEeccccc----------------------------------------hhHHHhcCccccccceEEcCCC-CeE
Confidence 99999999988754 4457789999999999999999 889
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---c
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H 262 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~ 262 (387)
++++.||+|++|+.++.+........+...+|+++..-|.+...++++...++|.+.++. ++.++++.. .
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkRE 436 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKRE 436 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCcc
Confidence 999999999999999988433333345667899999999888999999999999999988 788888753 2
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
.+...+.+.+|.|.++. +.++|+.++.|.+..+ .+-..+..|+..|..++-+|..+. ++
T Consensus 437 gGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG---------------~LE~tl~VhEkdvIGl~HHPHqNl-lA---- 495 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSG---------------KLERTLPVHEKDVIGLTHHPHQNL-LA---- 495 (508)
T ss_pred CCceEEEEecCCCcEEE-EEccCcEEEEEEeecC---------------ceeeeeecccccccccccCcccch-hh----
Confidence 34566778899999865 7788999999999886 345567889999999999997664 44
Q ss_pred CCCCCCCCceEEEEe
Q 016547 343 DCDSTGGGGTLQIWR 357 (387)
Q Consensus 343 d~~tg~~dg~i~iw~ 357 (387)
+-+.||.+++|.
T Consensus 496 ---sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 ---SYSEDGLLKLWK 507 (508)
T ss_pred ---hhcccchhhhcC
Confidence 555669999995
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=200.62 Aligned_cols=250 Identities=15% Similarity=0.221 Sum_probs=203.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.||...|+.+.|+| +...+++++.|-.|+||..... ........|.. +|+.+..+|.|.||++
T Consensus 255 ~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~------------s~~~~~~~h~~-~V~~ls~h~tgeYlls 320 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLS------------SEPTSSRPHEE-PVTGLSLHPTGEYLLS 320 (506)
T ss_pred hhccCcceEEEEEEecc-chhheeecCCcceEEeeccccc------------cCccccccccc-cceeeeeccCCcEEEE
Confidence 34568999999999999 8889999999999999999887 55667788887 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|++..+.|++++...... .-....-.+++.+|+||| .+
T Consensus 321 As~d~~w~Fsd~~~g~~lt~v--------------------------------------s~~~s~v~~ts~~fHpDg-Li 361 (506)
T KOG0289|consen 321 ASNDGTWAFSDISSGSQLTVV--------------------------------------SDETSDVEYTSAAFHPDG-LI 361 (506)
T ss_pred ecCCceEEEEEccCCcEEEEE--------------------------------------eeccccceeEEeeEcCCc-eE
Confidence 999999999999876432110 001122458999999999 89
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-c
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-S 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~ 263 (387)
|.+|..||.|++||+..+. ....+.+|.++|..++|+. +|.+|+++++|+.|++||+|. .+...++... .
T Consensus 362 fgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRK------l~n~kt~~l~~~ 432 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRK------LKNFKTIQLDEK 432 (506)
T ss_pred EeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehh------hcccceeecccc
Confidence 9999999999999999887 6788999999999999999 999999999999999999998 5555555432 2
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
..+.++.|.+.|.+| +.++.|=.|++++-.+ ..+..+..+..|.+..+.+.|....++++
T Consensus 433 ~~v~s~~fD~SGt~L-~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~------ 492 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYL-GIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLA------ 492 (506)
T ss_pred ccceeEEEcCCCCeE-EeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEe------
Confidence 369999999999975 4666565555554332 12355777788888999999999888777
Q ss_pred CCCCCCCceEEEEec
Q 016547 344 CDSTGGGGTLQIWRM 358 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~ 358 (387)
+||.|..++++.+
T Consensus 493 --s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 493 --STSMDAILRLYAL 505 (506)
T ss_pred --eccchhheEEeec
Confidence 7888899998865
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=202.20 Aligned_cols=246 Identities=20% Similarity=0.321 Sum_probs=203.7
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.+|.+.|.+++.++ ++++||+|+.|..|.||+.++. .++..+.+|.+ .|.+++|-.....|++++.
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~------------ehv~~~~ghr~-~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTL------------EHVKVFKGHRG-AVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCccc------------chhhccccccc-ceeeeeeecCccceeeeec
Confidence 38999999999999 9999999999999999999999 77888999998 7999999988889999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
|++|++|+++.. ..+.++.+|++.|.++...... +.+.+
T Consensus 265 Drsvkvw~~~~~----------------------------------------s~vetlyGHqd~v~~IdaL~re-R~vtV 303 (479)
T KOG0299|consen 265 DRSVKVWSIDQL----------------------------------------SYVETLYGHQDGVLGIDALSRE-RCVTV 303 (479)
T ss_pred CCceEEEehhHh----------------------------------------HHHHHHhCCccceeeechhccc-ceEEe
Confidence 999999999743 3346778999999999988776 66777
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cc----
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GH---- 262 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~---- 262 (387)
|+.|.++++|++.... ...+.++.+.+-|++|- +...|++|+.+|.|.+|++-. .+++.+.+ +|
T Consensus 304 GgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIP 372 (479)
T ss_pred ccccceeEEEeccccc---eeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecc------cCceeEeeccccccC
Confidence 7799999999995443 45667889999999998 478899999999999999988 66666543 22
Q ss_pred -------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 263 -------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 263 -------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
...|++++..|... |+|+|+.+|.|++|-+..+-... .++..+. -.+.|++++|+++|.+
T Consensus 373 ~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i-----------~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAI-----------NLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred CccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcccc-----------ceeeecc-cccEEEEEEEccCCCE
Confidence 23799999999877 78999999999999998853321 3344444 5678999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+++.++.+ ..+--|-..
T Consensus 440 ivagiGkE-------hRlGRW~~~ 456 (479)
T KOG0299|consen 440 IVAGIGKE-------HRLGRWWCL 456 (479)
T ss_pred EEEecccc-------cccceeeEe
Confidence 99876655 555555544
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1e-28 Score=188.78 Aligned_cols=261 Identities=18% Similarity=0.307 Sum_probs=200.4
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
.+.|..+.|+| .++.|+.++.||++++||+...+ ....+ .|.. ++.+++|.+ ...+++|+.||.
T Consensus 13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~------------l~~~~-~~~~-plL~c~F~d-~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANS------------LKLKF-KHGA-PLLDCAFAD-ESTIVTGGLDGQ 76 (323)
T ss_pred hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchh------------hhhhe-ecCC-ceeeeeccC-CceEEEeccCce
Confidence 57799999998 55556666799999999998872 22222 2443 799999986 567899999999
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
|+.+|+.++.. ..+..|...|.||.+++.. ..+++|+.
T Consensus 77 vr~~Dln~~~~-----------------------------------------~~igth~~~i~ci~~~~~~-~~vIsgsW 114 (323)
T KOG1036|consen 77 VRRYDLNTGNE-----------------------------------------DQIGTHDEGIRCIEYSYEV-GCVISGSW 114 (323)
T ss_pred EEEEEecCCcc-----------------------------------------eeeccCCCceEEEEeeccC-CeEEEccc
Confidence 99999986533 4567899999999999876 68999999
Q ss_pred CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEE
Q 016547 191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCV 269 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~ 269 (387)
|++|++||.+... ....+ .....|.++.. .++.|++|+.|..+.+||++++. .+.+ .-....-.+.|+
T Consensus 115 D~~ik~wD~R~~~--~~~~~-d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~-----~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 115 DKTIKFWDPRNKV--VVGTF-DQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLD-----EPFQRRESSLKYQTRCV 183 (323)
T ss_pred CccEEEEeccccc--ccccc-ccCceEEEEec---cCCEEEEeecCceEEEEEccccc-----chhhhccccceeEEEEE
Confidence 9999999999744 22233 23447888876 57899999999999999999853 2221 112345678999
Q ss_pred EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---------CCeeEEEEccCCCeEEEEe
Q 016547 270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~s~ 340 (387)
++.|++.- +++++-||+|.+=.++.....+ ...+.+..|. -+|++++|+|-.+.++
T Consensus 184 ~~~pn~eG-y~~sSieGRVavE~~d~s~~~~-----------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa--- 248 (323)
T KOG1036|consen 184 ALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ-----------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA--- 248 (323)
T ss_pred EEecCCCc-eEEEeecceEEEEccCCchHHh-----------hhceeEEeeecccCCceEEEEeceeEeccccceEE---
Confidence 99997765 5789999999887776541111 1233344443 2799999999988888
Q ss_pred cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
|||.||.|.+||+. ..+.+.++.+....|.+++|+
T Consensus 249 -----TgGsDG~V~~Wd~~------~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 249 -----TGGSDGIVNIWDLF------NRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred -----ecCCCceEEEccCc------chhhhhhccCCCCceEEEEec
Confidence 99999999999999 788889998888889999986
No 100
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=202.30 Aligned_cols=260 Identities=22% Similarity=0.376 Sum_probs=200.7
Q ss_pred CcEEEEEecC------CCCcEEEEecCCCcEEEEeccCCCCccc--ccCCC-------CCCCeEEEeccCCCceEEEEEC
Q 016547 32 GEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHA--VLGAT-------NSRPDLILTGHQDNAEFALAMC 96 (387)
Q Consensus 32 ~~v~~i~~~~------~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~-------~~~~~~~~~~h~~~~v~~~~~~ 96 (387)
..-.|++|.. ..++++|.|+.|..|.|||++-...... .++.. ..+......+|++ +|..+.|+
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n 252 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWN 252 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhc
Confidence 3446777654 2468999999999999999875422211 11100 0112223457887 68899998
Q ss_pred CC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 97 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 97 ~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
.. .+.|++||.|.+|++||+.+++ +...+..|...|.++
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~----------------------------------------p~~s~~~~~k~Vq~l 292 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGK----------------------------------------PKSSITHHGKKVQTL 292 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCC----------------------------------------cceehhhcCCceeEE
Confidence 75 4578999999999999998654 346667899999999
Q ss_pred EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+|+|..+..|++|+.|++|.+.|.+.... ....-...+.|-.++|.|.....++++..||+++-+|+|.+ +++
T Consensus 293 ~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~~ 365 (463)
T KOG0270|consen 293 EWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GKP 365 (463)
T ss_pred EecCCCceEEEeccccceEEeeeccCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CCc
Confidence 99999989999999999999999996331 12222345789999999988899999999999999999986 699
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
+.++++|.++|.++++++.-+.++++++.|+.+++|++...... ......-.-+...++++.|+-.+
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-------------~v~~~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-------------SVKEHSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-------------ccccccccccceeecccCCCcce
Confidence 99999999999999999999889999999999999999874321 11111111234678889999888
Q ss_pred EEEEecCCCCCCCCCceEEEEecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+++ .||..+.++|||+.
T Consensus 433 ~la-------~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 433 TLA-------FGGEKAVLRVWDIF 449 (463)
T ss_pred EEE-------ecCccceEEEeecc
Confidence 887 67777899999998
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.6e-30 Score=203.39 Aligned_cols=242 Identities=20% Similarity=0.333 Sum_probs=194.5
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.+.|..++|+++.|.+ ++..+++++.|+.+++|+++.. +...++.+|++ .|+++.|......+++|
T Consensus 214 tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~------------r~~~TLsGHtd-kVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSL------------RLRHTLSGHTD-KVTAAKFKLSHSRVVSG 279 (459)
T ss_pred hhhccCCCcceeeecC-CCceEEeecCCCceeeeeccch------------hhhhhhccccc-ceeeehhhccccceeec
Confidence 4456788999999999 7777888899999999999998 78889999998 69999999877779999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|.+|+.||+.+..+....-+ ...+..|...+ ..+
T Consensus 280 s~DRtiK~WDl~k~~C~kt~l~-----------------------------------------~S~cnDI~~~~---~~~ 315 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCSKTVLP-----------------------------------------GSQCNDIVCSI---SDV 315 (459)
T ss_pred cccchhhhhhhhhhheeccccc-----------------------------------------cccccceEecc---eee
Confidence 9999999999987544332221 23456666652 569
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc---
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--- 262 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~--- 262 (387)
++|..|+.|++||.+... .......+ +.|+++..++ ++..+++++.|.++.++|+++ ......+.+.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~--~~~sv~~g-g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt------~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSAD--KTRSVPLG-GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRT------KEIRQTFSAEGFK 385 (459)
T ss_pred eecccccceEEEeccCCc--eeeEeecC-cceeeEeecc-CCeEEeeecCCCceeeeeccc------ccEEEEeeccccc
Confidence 999999999999999988 45555544 4999999999 999999999999999999998 5666655432
Q ss_pred -cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 263 -SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 263 -~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
....+.+.|||++.| +|+|+.||.|+||++.+++.. ...........|++++|+|.|.+++
T Consensus 386 ~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE-------------~~l~~s~s~~aI~s~~W~~sG~~Ll---- 447 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLE-------------KVLSLSTSNAAITSLSWNPSGSGLL---- 447 (459)
T ss_pred cccccceeEECCCCce-eeeccCCCcEEEEEccCceEE-------------EEeccCCCCcceEEEEEcCCCchhh----
Confidence 234889999999997 579999999999999985322 1222222233799999999999998
Q ss_pred CCCCCCCCCceEEEEe
Q 016547 342 DDCDSTGGGGTLQIWR 357 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~ 357 (387)
+++.++.+.+|.
T Consensus 448 ----sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 ----SADKQKAVTLWT 459 (459)
T ss_pred ----cccCCcceEecC
Confidence 778889999993
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=205.97 Aligned_cols=243 Identities=20% Similarity=0.320 Sum_probs=184.5
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
.....+.+|+. .|.++++.|.|..|++|+.|.+|++||++......
T Consensus 158 shEi~l~hgtk-~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~--------------------------------- 203 (641)
T KOG0772|consen 158 SHEIQLKHGTK-IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM--------------------------------- 203 (641)
T ss_pred cceEeccCCce-EEEEeeecCCCceeeeccccceEEEEecccccccc---------------------------------
Confidence 34556777776 89999999999999999999999999998532211
Q ss_pred CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC----------ceeEEeeccCCCeeEEEecCCC
Q 016547 157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------PVIKVEKAHDADLHCVDWNPLD 226 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~ 226 (387)
..++ .........|++++|++.+ ..|++.+.....+++|-...+. .-+...++|...+++.+|+|..
T Consensus 204 ~~fr--~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 204 RSFR--QLQPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred hhhh--ccCcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc
Confidence 1111 1222344578999999999 5666667778899999654431 0122346899999999999988
Q ss_pred CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 301 (387)
...|++++.||++|+||+.... +....++ +..-+++..+|+++++. +|+|+.||.|.+|+.......
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k-----~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTK-----SQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred ccceEEecCCCcEEEEecCCch-----hheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccc--
Confidence 8999999999999999998742 3333333 22346889999999995 789999999999998664322
Q ss_pred cCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc-
Q 016547 302 QGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA- 378 (387)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~- 378 (387)
.......+|.. .|+++.||++|++|+ +-|.|+++++||+++ ..+++.+..+-..
T Consensus 353 ----------p~~~vk~AH~~g~~Itsi~FS~dg~~Ll--------SRg~D~tLKvWDLrq-----~kkpL~~~tgL~t~ 409 (641)
T KOG0772|consen 353 ----------PVMKVKDAHLPGQDITSISFSYDGNYLL--------SRGFDDTLKVWDLRQ-----FKKPLNVRTGLPTP 409 (641)
T ss_pred ----------cceEeeeccCCCCceeEEEeccccchhh--------hccCCCceeeeeccc-----cccchhhhcCCCcc
Confidence 12344467777 899999999999999 999999999999996 4777777665543
Q ss_pred -eEEEeeecC
Q 016547 379 -HVISCTSKP 387 (387)
Q Consensus 379 -~v~~~~f~P 387 (387)
+-+.|+|||
T Consensus 410 ~~~tdc~FSP 419 (641)
T KOG0772|consen 410 FPGTDCCFSP 419 (641)
T ss_pred CCCCccccCC
Confidence 467788887
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.8e-28 Score=184.34 Aligned_cols=299 Identities=16% Similarity=0.216 Sum_probs=207.9
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE--EeccCCCceEEEEECCCCCE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~~~~~~~ 101 (387)
...+.+|.+.|++++|++ +|+.|||++.|++|++|++++.+.... ++++. -.+|. +.+.|.||-+-
T Consensus 79 ~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~R~nve~dhp----T~V~FapDc~s 146 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEH-------RCIRQNVEYDHP----TRVVFAPDCKS 146 (420)
T ss_pred hhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhh-------hHhhccccCCCc----eEEEECCCcce
Confidence 345668999999999999 999999999999999999988643211 12111 11233 58999999775
Q ss_pred E-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 102 V-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 102 l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
+ +++-...++++|.+.+...-....+ .........-+.|+-.+..+-....
T Consensus 147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~----------------------------~v~~D~~~f~~kh~v~~i~iGiA~~ 198 (420)
T KOG2096|consen 147 VVVSVKRGNKLCVYKLVKKTDGSGSHH----------------------------FVHIDNLEFERKHQVDIINIGIAGN 198 (420)
T ss_pred EEEEEccCCEEEEEEeeecccCCCCcc----------------------------cccccccccchhcccceEEEeecCC
Confidence 4 4555667899998865432100000 0000011122346666777777666
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC--CCCceEE
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINK 258 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~ 258 (387)
+ .++++++.|..|.+|+++ ++ .+..+......-+..+.+| +|+++++++-.--|++|..--..... .-..+.+
T Consensus 199 ~-k~imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 199 A-KYIMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred c-eEEEEecCCCcEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 6 899999999999999998 55 4566666666677889999 99999999999999999875322111 0345678
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+++|...|..++|+++.+.+ ++.+.||+++|||+.-.-+. .+.+......+ ..+....+....++.+|+++.|++
T Consensus 274 LkGH~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~-~qDpk~Lk~g~---~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEA-GQDPKILKEGS---APLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred eccchhheeeeeeCCCccee-EEEecCCcEEEeeccceEec-CCCchHhhcCC---cchhhcCCCceEEEeCCCCcEEEe
Confidence 89999999999999999974 69999999999998753211 11111100000 111222334458999999998887
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEeeecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP 387 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~f~P 387 (387)
+.+ ..+++|..+ .++.+.+++ .|...|.+++|+|
T Consensus 349 s~g---------s~l~~~~se------~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 349 SFG---------SDLKVFASE------DGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred ecC---------CceEEEEcc------cCccchhHHHhhcCceeeEEecC
Confidence 655 579999988 676666665 5889999999986
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=185.25 Aligned_cols=242 Identities=22% Similarity=0.307 Sum_probs=188.6
Q ss_pred EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
-..|.+ .|..+...--|++|+||+.|++|+|+.+++... ..+
T Consensus 7 dt~H~D-~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-------------------------------------s~l 48 (299)
T KOG1332|consen 7 DTQHED-MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-------------------------------------SKL 48 (299)
T ss_pred hhhhhh-hhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-------------------------------------cee
Confidence 456766 677777777899999999999999999985422 245
Q ss_pred ceeecCCCCCeEEEEEc-cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC-CCeEEEeeCCCeE
Q 016547 162 RGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-DNLILTGSADNSV 239 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i 239 (387)
+..+.+|.++|..++|. |.-+.+|++++.||.|.||.-..++.........|...|++++|.|++ +-.|++++.||.|
T Consensus 49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 57889999999999995 444489999999999999999888766677788899999999999943 5688999999999
Q ss_pred EEEEeccCCCCCCCCceEEeccccceEEEEEEcCC---CC----------eeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547 240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KS----------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~----------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~ 306 (387)
.+.+.+.... .........|.-.|++++|.|. |. +-|++|+.|..|+||+.....-
T Consensus 129 svl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-------- 197 (299)
T KOG1332|consen 129 SVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-------- 197 (299)
T ss_pred EEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--------
Confidence 9999987411 3344455679999999999986 41 1268999999999999987411
Q ss_pred CCCCceeeeeeccCCCCeeEEEEccCC---CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547 307 TNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC 383 (387)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 383 (387)
.+-..+.+|.+.|..++|.|.- ...++ +++.||+|.||..+.........++++ ....++++
T Consensus 198 -----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA-------S~SqDg~viIwt~~~e~e~wk~tll~~---f~~~~w~v 262 (299)
T KOG1332|consen 198 -----KLERTLEGHKDWVRDVAWAPSVGLPKSTIA-------SCSQDGTVIIWTKDEEYEPWKKTLLEE---FPDVVWRV 262 (299)
T ss_pred -----hhhhhhhhcchhhhhhhhccccCCCceeeE-------EecCCCcEEEEEecCccCccccccccc---CCcceEEE
Confidence 2233478999999999999975 33445 566669999999884333333444443 67889999
Q ss_pred eecC
Q 016547 384 TSKP 387 (387)
Q Consensus 384 ~f~P 387 (387)
.||+
T Consensus 263 SWS~ 266 (299)
T KOG1332|consen 263 SWSL 266 (299)
T ss_pred EEec
Confidence 8875
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=3.2e-28 Score=205.06 Aligned_cols=242 Identities=19% Similarity=0.319 Sum_probs=203.1
Q ss_pred ceeeeeeecCCCcEEE-EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 21 FVKKHKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~-i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
.++.....+|.+-|.+ ++|.+.++-.+++|+.|.+|.+|..... .+...+.+|.. .|.++....++
T Consensus 47 ~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~------------~P~~~LkgH~s-nVC~ls~~~~~ 113 (745)
T KOG0301|consen 47 YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA------------EPLYTLKGHKS-NVCSLSIGEDG 113 (745)
T ss_pred cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC------------Cchhhhhcccc-ceeeeecCCcC
Confidence 4444556678888888 8888756667999999999999999998 89999999998 58888877777
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
. +++||.|.++++|.... ....+.+|+..|++++..|
T Consensus 114 ~-~iSgSWD~TakvW~~~~------------------------------------------l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 114 T-LISGSWDSTAKVWRIGE------------------------------------------LVYSLQGHTASVWAVASLP 150 (745)
T ss_pred c-eEecccccceEEecchh------------------------------------------hhcccCCcchheeeeeecC
Confidence 7 99999999999998753 2245789999999999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
++ .++||+.|.+|++|.- ++ ..+.+.+|...|+.+++-+ ...|++++.||.|++|++. +..+.+.
T Consensus 151 e~--~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-------ge~l~~~ 215 (745)
T KOG0301|consen 151 EN--TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-------GEVLLEM 215 (745)
T ss_pred CC--cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-------Cceeeee
Confidence 86 7999999999999975 33 5678899999999999987 5578899999999999995 8999999
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
.+|...|+++....++. +++++++|++++||+.... .....-....|+++.+-++|+ ++
T Consensus 216 ~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~-----------------~q~I~lPttsiWsa~~L~NgD-Iv-- 274 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDEC-----------------VQVITLPTTSIWSAKVLLNGD-IV-- 274 (745)
T ss_pred eccceEEEEEEecCCCC-eEEEecCCceEEEeecCce-----------------EEEEecCccceEEEEEeeCCC-EE--
Confidence 99999999999766666 5789999999999998742 233333344789999988877 45
Q ss_pred ecCCCCCCCCCceEEEEecCC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+|+.||.||||..+.
T Consensus 275 ------vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 ------VGGSDGRVRVFTVDK 289 (745)
T ss_pred ------EeccCceEEEEEecc
Confidence 677889999999874
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-28 Score=204.82 Aligned_cols=259 Identities=20% Similarity=0.354 Sum_probs=211.6
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEE-EEECC-CCCE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-LAMCP-TEPY 101 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~-~~~~~-~~~~ 101 (387)
...+.+|...|..++..+ +..+++++.||++++|+-...+ ......+.+|.+ .|.+ +++.+ ++-.
T Consensus 7 s~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~----------~l~~~~~~~~~g-~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQ----------YLETHAFEGPKG-FIANSICYAESDKGR 73 (745)
T ss_pred EEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcc----------cccceecccCcc-eeeccceeccccCcc
Confidence 356678999999998665 4479999999999999986662 234456777877 5555 78875 4556
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++|+.|+.|.+|.... ..++..+.+|+..|.++....++
T Consensus 74 l~~g~~D~~i~v~~~~~----------------------------------------~~P~~~LkgH~snVC~ls~~~~~ 113 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQ----------------------------------------AEPLYTLKGHKSNVCSLSIGEDG 113 (745)
T ss_pred eEeecccceEEEEecCC----------------------------------------CCchhhhhccccceeeeecCCcC
Confidence 99999999999998863 45678899999999999988777
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
. +++|+.|.++++|-.... ...+.+|...|.+++.-| .+ .+++|+.|.+|++|.- ++.+++|.+
T Consensus 114 -~-~iSgSWD~TakvW~~~~l----~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--------~~~l~tf~g 177 (745)
T KOG0301|consen 114 -T-LISGSWDSTAKVWRIGEL----VYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--------GTLLKTFSG 177 (745)
T ss_pred -c-eEecccccceEEecchhh----hcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--------Cchhhhhcc
Confidence 4 999999999999987543 455889999999999998 55 9999999999999965 468899999
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
|...|..+++-+++. |++++.||.|++|++.. .++....+|..-|++++..++++.++
T Consensus 178 HtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------------e~l~~~~ghtn~vYsis~~~~~~~Iv---- 235 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------------EVLLEMHGHTNFVYSISMALSDGLIV---- 235 (745)
T ss_pred chhheeeeEEecCCC--eEeecCCceEEEEeccC----------------ceeeeeeccceEEEEEEecCCCCeEE----
Confidence 999999999999987 45999999999999965 46788899999999999777666665
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
|+|.|++++||+.. ++.+.+.-....|+++.+
T Consensus 236 ----s~gEDrtlriW~~~--------e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 236 ----STGEDRTLRIWKKD--------ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred ----EecCCceEEEeecC--------ceEEEEecCccceEEEEE
Confidence 77778999999976 355555544457777665
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-28 Score=181.17 Aligned_cols=231 Identities=21% Similarity=0.315 Sum_probs=194.0
Q ss_pred EEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547 81 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 160 (387)
Q Consensus 81 ~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (387)
.++||.. +++.+.++.+|.+|.+|+.|.+..+|-..++ +
T Consensus 5 ~l~GHER-plTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------------------------------e 43 (327)
T KOG0643|consen 5 LLQGHER-PLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------------------------------E 43 (327)
T ss_pred ccccCcc-ccceEEecCCCcEEEEecCCCCceEEEecCC----------------------------------------c
Confidence 4788987 7999999999999999999999999987543 4
Q ss_pred CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----
Q 016547 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---- 236 (387)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---- 236 (387)
.+.++.+|++.|+|+....+. ..+++|+.|.++++||+.+++ .+..+ ....+|..+.|++ ++++++...++
T Consensus 44 rlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk--~la~~-k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGK--QLATW-KTNSPVKRVDFSF-GGNLILASTDKQMGY 118 (327)
T ss_pred eeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCc--EEEEe-ecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence 457889999999999999887 889999999999999999999 44444 3578999999999 88888877654
Q ss_pred -CeEEEEEeccCCCCC-CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547 237 -NSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 314 (387)
Q Consensus 237 -g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 314 (387)
+.|.++|++...... ...++..+..+++.++.+-|.|-+++| ++|..||.|.+||++++.+ .+
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~--------------~v 183 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTGKE--------------LV 183 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccCce--------------ee
Confidence 579999999543211 156788888899999999999999975 5999999999999998533 34
Q ss_pred eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..-..|...|+.|.++++..+++ |++.|.+-++||+. +-++++++. -..||++.+++|
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T~Fi--------T~s~Dttakl~D~~------tl~v~Kty~-te~PvN~aaisP 241 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRTYFI--------TGSKDTTAKLVDVR------TLEVLKTYT-TERPVNTAAISP 241 (327)
T ss_pred echhhhccccccccccCCcceEE--------ecccCccceeeecc------ceeeEEEee-ecccccceeccc
Confidence 45567899999999999999998 89999999999999 566666665 457888888877
No 108
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.96 E-value=6.9e-28 Score=182.67 Aligned_cols=297 Identities=22% Similarity=0.363 Sum_probs=218.7
Q ss_pred cceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCC-------CcEEEEeccCCCCcccccCCCCCCCeE
Q 016547 8 MLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS-------PDVLIWDVEAQPNRHAVLGATNSRPDL 80 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 80 (387)
-+++.++++... +....++.|.++|+.++-+|.+.++|+|+..+ -.+.||.+........ .....++.
T Consensus 42 Vhll~~d~e~s~--l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~ 116 (370)
T KOG1007|consen 42 VHLLRLDSEGSE--LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---SSTLECVA 116 (370)
T ss_pred eEEEEecCccch--hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---cchhhHhh
Confidence 345566655443 33445667899999999999999999998663 2467999876633211 11123344
Q ss_pred EEe-ccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547 81 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 159 (387)
Q Consensus 81 ~~~-~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (387)
.+. .+-+ .|.|+.|.|++..+++-. |..|.+|++++.......-.
T Consensus 117 ~Ldteavg-~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~-------------------------------- 162 (370)
T KOG1007|consen 117 SLDTEAVG-KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL-------------------------------- 162 (370)
T ss_pred cCCHHHhC-ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec--------------------------------
Confidence 444 3333 689999999999999876 88999999987543211000
Q ss_pred CCceeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547 160 GPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 238 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 238 (387)
...-..+....++-+|+|. ..+.+++ ..|+++..||+++.++ .......|...+..+.|+|+...+|++|++||.
T Consensus 163 --ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 163 --SSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred --ccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 0111225667788899993 2255555 4689999999998773 344556899999999999977789999999999
Q ss_pred EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec--cCC------------
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE--QGP------------ 304 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~--~~~------------ 304 (387)
|+|||.|.. ..++.++.+|...|.++.|+|....|+.+|+.|..|.+|.......... ...
T Consensus 239 vriWD~R~t-----k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 239 VRIWDTRKT-----KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred EEEEeccCC-----CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 999999985 6789999999999999999998887888999999999998765432111 110
Q ss_pred CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.....+...+.++..|++.|++++|+.-.++++|+-|.| |.+.|=.+.
T Consensus 314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD-------GRviIs~V~ 361 (370)
T KOG1007|consen 314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD-------GRVIISSVP 361 (370)
T ss_pred hcccccccccccccccccceEEEeeccCCCeeEEEeccC-------ceEEeecCC
Confidence 001134456678889999999999999999999977776 999988776
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-28 Score=195.71 Aligned_cols=243 Identities=19% Similarity=0.376 Sum_probs=197.2
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
.+--+++|.|++-+| .|.+|+.|+..|.+++|.+.++ ..+..+.+|-. .|+|+.|+-||.+|+||+
T Consensus 77 ~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG------------~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 77 YIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSG------------ILLNVLSAHYQ-SITCLKFSDDGSHIITGS 142 (476)
T ss_pred hcccccceeeeecCC-CceEEEeecccCcEEEEEeccc------------cHHHHHHhhcc-ceeEEEEeCCCcEEEecC
Confidence 344689999999888 9999999999999999999999 77778888987 699999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-CeeE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEF 185 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l 185 (387)
.||.|.+|.+.+-... .+....+++..+..|+-+|+++...+-+ ...+
T Consensus 143 kDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred CCccEEEEEEEeeccc-------------------------------ccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 9999999998642111 0112456778999999999999987652 3579
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC--C--------CCCCc
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS--N--------GVGSP 255 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~--------~~~~~ 255 (387)
++++.|.++++||+..+. .+..+ ..+..+.+++.+| .+..+.+|+.+|.|.+.++..... . ..+..
T Consensus 192 ~TaS~D~t~k~wdlS~g~--LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~ 267 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGV--LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ 267 (476)
T ss_pred EEecCCceEEEEEeccce--eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence 999999999999999987 44443 4578899999999 999999999999999998876431 1 11445
Q ss_pred eEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547 256 INKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 333 (387)
Q Consensus 256 ~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (387)
+..+.+|.. .|+|++.+-||. +|++|+.||.++|||+... +++.++....++|+.+.+.|-.
T Consensus 268 ~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~---------------Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 268 INVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK---------------QCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH---------------HHHHHHhhhccccceeEeeccc
Confidence 667788888 999999999999 6789999999999999874 3455554456788888886643
Q ss_pred C
Q 016547 334 P 334 (387)
Q Consensus 334 ~ 334 (387)
+
T Consensus 332 ~ 332 (476)
T KOG0646|consen 332 R 332 (476)
T ss_pred c
Confidence 3
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=192.94 Aligned_cols=267 Identities=13% Similarity=0.240 Sum_probs=209.1
Q ss_pred cEEEEec-CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547 45 KIVATHT-DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 45 ~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 123 (387)
.+++++. ....+.+|.+.... .......-++ +|.+++-+|+|.+|+.|...|.|.+|.+.++.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~------------~~~q~~v~Pg-~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--- 114 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKD------------QVVQYIVLPG-PVHALASSNLGYFLLAGTISGNLYLWELSSGI--- 114 (476)
T ss_pred hheeeecccCccccccccCchh------------hhhhhccccc-ceeeeecCCCceEEEeecccCcEEEEEecccc---
Confidence 3555543 34578888887652 1111112223 68999999999999999899999999998654
Q ss_pred ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccC--
Q 016547 124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-- 201 (387)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 201 (387)
.+..+..|-..|+|+.|+.|+ .+|++|+.||.|.+|++..
T Consensus 115 -------------------------------------LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 115 -------------------------------------LLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred -------------------------------------HHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeec
Confidence 346678899999999999998 8999999999999998743
Q ss_pred -----CCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547 202 -----GTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275 (387)
Q Consensus 202 -----~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (387)
........+..|.-+|+.+...+. ...+++++|.|.++++||+.. +..+.++. ....+.+++.+|-+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccc
Confidence 122356778899999999998772 357999999999999999998 88888776 56789999999999
Q ss_pred CeeEEEecCCCeEEEEeCCCCCceeccC-CCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547 276 SSVFGSSAEDGLLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGT 352 (387)
Q Consensus 276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~ 352 (387)
+.++ .|+.+|.|.+.++.......... ..........+..+.||.+ .|++++.+-||..|+ +|+.||.
T Consensus 230 ~~~y-iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl--------SGd~dg~ 300 (476)
T KOG0646|consen 230 RVVY-IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL--------SGDEDGK 300 (476)
T ss_pred cEEE-ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE--------eeCCCCC
Confidence 8654 89999999999988754221100 0111111234566788988 999999999999888 9999999
Q ss_pred EEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 353 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 353 i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|+|||+. +.++++++....++|+-+.+.|
T Consensus 301 VcvWdi~------S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 301 VCVWDIY------SKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EEEEecc------hHHHHHHHhhhccccceeEeec
Confidence 9999999 8999999998889999888844
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3e-28 Score=185.20 Aligned_cols=235 Identities=24% Similarity=0.416 Sum_probs=182.3
Q ss_pred EeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 160 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (387)
...|.+ .|+++...+ .|+|+++|+.||.|.+||+++.......... -+....-
T Consensus 39 ~r~HgG-svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-------------------------~k~~c~v 92 (397)
T KOG4283|consen 39 VRPHGG-SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-------------------------AKHKCIV 92 (397)
T ss_pred eccCCC-ccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-------------------------eheeeec
Confidence 344655 689999987 6899999999999999999864321110000 0000000
Q ss_pred CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeEEEeeCCCe
Q 016547 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNS 238 (387)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~ 238 (387)
....-.+|+-.|.++.|.|.+..+|.+++.|.++++||..+.+ ....+ ..++.|++-+++|- ..-++|+|..|-.
T Consensus 93 ~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 93 AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ--EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce--eeEEe-ecCceeehhhcChhhhcceEEEEecCCCc
Confidence 1122357888999999999877899999999999999998877 34444 35678888888883 2457888889999
Q ss_pred EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC-CceeccCCCCCCCCceeeeee
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 317 (387)
|++.|+.+ +..-+.+.+|...|.++.|+|...++|++|+.||.|++||++.. +.......+....++. +..-
T Consensus 170 VrLCDi~S------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~-~~~n 242 (397)
T KOG4283|consen 170 VRLCDIAS------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI-LKTN 242 (397)
T ss_pred EEEEeccC------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc-cccc
Confidence 99999999 99999999999999999999999999999999999999999986 3334444444333333 3356
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
..|.+.|++++|..++.+++ ++|.|..+++|+...
T Consensus 243 ~ah~gkvngla~tSd~~~l~--------~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLA--------SCGTDDRIRVWNMES 277 (397)
T ss_pred ccccceeeeeeecccchhhh--------hccCccceEEeeccc
Confidence 78999999999999999998 899999999999874
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-28 Score=186.70 Aligned_cols=266 Identities=20% Similarity=0.324 Sum_probs=214.9
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEecc----CCCCc--c----------------------cccCCC
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE----AQPNR--H----------------------AVLGAT 74 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~----~~~~~--~----------------------~~~~~~ 74 (387)
...+..||.|.|++|+|++ .+.+++|++.|++-.||... ..... . ...++.
T Consensus 182 CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred ceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 3456779999999999999 88999999999999999721 11100 0 001112
Q ss_pred CCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCC
Q 016547 75 NSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 154 (387)
Q Consensus 75 ~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (387)
...++..+.+|.. +|.+..|...|+.+++++.|.+..+||++++
T Consensus 261 iRvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----------------------------------- 304 (481)
T KOG0300|consen 261 IRVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWDVETG----------------------------------- 304 (481)
T ss_pred eeeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeeeeccC-----------------------------------
Confidence 2246788999998 7899999999999999999999999999864
Q ss_pred CCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
+++..+.+|....+.++-+|.. +++++.+.|.+.++||++..- +.+..+++|...|+++.|.. +..+++|+
T Consensus 305 -----e~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI-~sV~VFQGHtdtVTS~vF~~--dd~vVSgS 375 (481)
T KOG0300|consen 305 -----EVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI-QSVAVFQGHTDTVTSVVFNT--DDRVVSGS 375 (481)
T ss_pred -----ceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc-ceeeeecccccceeEEEEec--CCceeecC
Confidence 3457788999999999999998 899999999999999999543 46788999999999999985 67899999
Q ss_pred CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547 235 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 314 (387)
Q Consensus 235 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 314 (387)
+|.+|++||++++ ..++.++. .+++++.++.+..++ ++|.--++..|++||+....... . ..
T Consensus 376 DDrTvKvWdLrNM-----RsplATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaR--l---------Pr 437 (481)
T KOG0300|consen 376 DDRTVKVWDLRNM-----RSPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLAR--L---------PR 437 (481)
T ss_pred CCceEEEeeeccc-----cCcceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCcccc--C---------Cc
Confidence 9999999999987 67888887 467899999998777 67788888999999998642211 1 12
Q ss_pred eeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCCCCceEEEEecCC
Q 016547 315 FQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
....+|...|++++|..+.+ .|+ ++|-|..+.-|+++.
T Consensus 438 tsRqgHrRMV~c~AW~eehp~cnLf--------tcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 438 TSRQGHRRMVTCCAWLEEHPACNLF--------TCGFDRMVAGWKINT 477 (481)
T ss_pred ccccccceeeeeeeccccCcccccc--------cccccceeeeeEecc
Confidence 23468999999999986543 355 889999999999983
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-29 Score=209.20 Aligned_cols=230 Identities=22% Similarity=0.429 Sum_probs=189.1
Q ss_pred EEEEC-CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 92 ALAMC-PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 92 ~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
.+..+ |.+++|++|++||.|++|++...... .....+..++.|.+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~----------------------------------~s~~~~asme~HsD 74 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE----------------------------------PSTPYIASMEHHSD 74 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCC----------------------------------cccchhhhhhhhHh
Confidence 34444 46778999999999999998743211 01112467788999
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEe-cCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW-NPLDDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
.|+.+....++ +.|++++.|-+|++|+......-++..+..|...|.|+++ .+ +..++|+|+.|+.|.+||+.+...
T Consensus 75 WVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 75 WVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred HHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcch
Confidence 99999999998 7899999999999999987753467788899999999999 55 899999999999999999997421
Q ss_pred CC----CCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547 250 NG----VGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324 (387)
Q Consensus 250 ~~----~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (387)
.. .......+. ++..+|++++.++.|. ++++|+.++.+++||.+... .+..+.||...|
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~---------------kimkLrGHTdNV 216 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCK---------------KIMKLRGHTDNV 216 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccccc---------------ceeeeeccccce
Confidence 00 011222333 7888999999999996 78899999999999999863 356678999999
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..+..++||..++ +++.||+|++||+. ...++.++..|...|+++..+|
T Consensus 217 r~ll~~dDGt~~l--------s~sSDgtIrlWdLg------qQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 217 RVLLVNDDGTRLL--------SASSDGTIRLWDLG------QQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred EEEEEcCCCCeEe--------ecCCCceEEeeecc------ccceeeeEEeccCceEEEeeCC
Confidence 9999999999999 89999999999999 7999999999999999998775
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-28 Score=200.29 Aligned_cols=272 Identities=20% Similarity=0.362 Sum_probs=216.6
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-CCCceEEEEECCCCCE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY 101 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~~~~~~~~~~ 101 (387)
+.+..+.|..-|.++..+. ..+.+.||+. |.|+|||+...... .++..+..- .++.|.++.+.|||+.
T Consensus 411 rq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdcl~rdnyiRSckL~pdgrt 479 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDCLNRDNYIRSCKLLPDGRT 479 (705)
T ss_pred HhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCC---------CccccccccCcccceeeeEecCCCce
Confidence 4556678999899999887 7788999876 67999999876322 233333332 3446899999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
|++|+.-.++.|||+...... ....+....-...+++.+||.
T Consensus 480 LivGGeastlsiWDLAapTpr--------------------------------------ikaeltssapaCyALa~spDa 521 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPR--------------------------------------IKAELTSSAPACYALAISPDA 521 (705)
T ss_pred EEeccccceeeeeeccCCCcc--------------------------------------hhhhcCCcchhhhhhhcCCcc
Confidence 999999999999999754221 112222333456789999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
++.++++.||.|.|||+.... .++.+++|...+.||.+++ +|..|.+|+-|++||.||++. +..+....
T Consensus 522 -kvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlre------grqlqqhd- 590 (705)
T KOG0639|consen 522 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLRE------GRQLQQHD- 590 (705)
T ss_pred -ceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhh------hhhhhhhh-
Confidence 889999999999999999877 7899999999999999999 999999999999999999998 66655544
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
..+.|.++..+|++.+ ++.|-+++.+.|-...... ...+.-|++-|.++.|.+.|++++
T Consensus 591 F~SQIfSLg~cP~~dW-lavGMens~vevlh~skp~----------------kyqlhlheScVLSlKFa~cGkwfv---- 649 (705)
T KOG0639|consen 591 FSSQIFSLGYCPTGDW-LAVGMENSNVEVLHTSKPE----------------KYQLHLHESCVLSLKFAYCGKWFV---- 649 (705)
T ss_pred hhhhheecccCCCccc-eeeecccCcEEEEecCCcc----------------ceeecccccEEEEEEecccCceee----
Confidence 4678999999999997 5789999999988887642 345577999999999999999998
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
+.|.|+.+..|... -|..+-+.. ..++|.+|+.|
T Consensus 650 ----StGkDnlLnawrtP------yGasiFqsk-E~SsVlsCDIS 683 (705)
T KOG0639|consen 650 ----STGKDNLLNAWRTP------YGASIFQSK-ESSSVLSCDIS 683 (705)
T ss_pred ----ecCchhhhhhccCc------cccceeecc-ccCcceeeeec
Confidence 88888999999988 455444443 45677777654
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.1e-27 Score=201.83 Aligned_cols=337 Identities=19% Similarity=0.268 Sum_probs=235.2
Q ss_pred cCcceeeeeeecCCCcEEEEEecCCCC--cEEEEecCCCcEEEEeccCCCCcccc---------cCCCCCCCe-------
Q 016547 18 RSPFVKKHKTIIHPGEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHAV---------LGATNSRPD------- 79 (387)
Q Consensus 18 ~~~~~~~~~~~~h~~~v~~i~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~---------~~~~~~~~~------- 79 (387)
...+.....+.||.+-|++++|....+ -+||+++.|..|+||.+.-....... .........
T Consensus 178 ~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 178 ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 335667778889999999999987443 58899999999999987644311110 000000011
Q ss_pred ---EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcC--ccccCCCccc-CCCCCCceeccC------CCCC
Q 016547 80 ---LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT--SSATDPATAK-SAGSSGSIIKQS------PKPG 147 (387)
Q Consensus 80 ---~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~------~~~~ 147 (387)
..+.||++ .|+++.|+|.+..|++++.|.++.+|...+..- ....+..... ...+.......+ ....
T Consensus 258 s~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 258 SFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred ehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence 23458998 899999999999999999999999998765411 1111111110 010111111111 1112
Q ss_pred CCCCCCCC---CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC----------------------
Q 016547 148 DGNDKAAD---GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG---------------------- 202 (387)
Q Consensus 148 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------------- 202 (387)
.+...+|. .....+.....+|.+.|+++.|.|.| .++++.+.|.+-+++-.-..
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 33334443 23334556678999999999999999 78888888888777543200
Q ss_pred --------------------------------------------------------------------------------
Q 016547 203 -------------------------------------------------------------------------------- 202 (387)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (387)
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence
Q ss_pred ------------------CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-----eEEEEEeccCCCCCCCCceEEe
Q 016547 203 ------------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 203 ------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
-.|....+.+|...|++++.+| +++++|+++... .|++|+..+ ...+..+
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L 568 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------WLQVQEL 568 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------hhhhhee
Confidence 0011223467888999999999 999999998753 599999998 8888899
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
.+|+-.|+.++||||+++|| +.+.|+++.+|......... ..+.....|..-|.+..|+|++.+++
T Consensus 569 ~~HsLTVT~l~FSpdg~~LL-svsRDRt~sl~~~~~~~~~e-----------~~fa~~k~HtRIIWdcsW~pde~~Fa-- 634 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLL-SVSRDRTVSLYEVQEDIKDE-----------FRFACLKAHTRIIWDCSWSPDEKYFA-- 634 (764)
T ss_pred cccceEEEEEEECCCCcEEE-EeecCceEEeeeeecccchh-----------hhhccccccceEEEEcccCcccceeE--
Confidence 99999999999999999865 88999999999986532221 11334678999999999999999866
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhh--hhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--LEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~v~~~~f~P 387 (387)
|++.|.+|++|...+. ..+.+.. ...+..+|+++++.|
T Consensus 635 ------TaSRDK~VkVW~~~~~----~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 635 ------TASRDKKVKVWEEPDL----RDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred ------EecCCceEEEEeccCc----hhhhhhhhchhccCCceeeEEeec
Confidence 7777899999999953 1234433 446889999999876
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=182.52 Aligned_cols=277 Identities=13% Similarity=0.167 Sum_probs=203.6
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
+.|.. -.|+.|++ .|.+||+|+.||.|.|||+.+. .+-..+.+|.. +|.+++||++|++|+|+|.
T Consensus 21 ld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~-pi~sl~WS~dgr~LltsS~ 85 (405)
T KOG1273|consen 21 LDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVR-PITSLCWSRDGRKLLTSSR 85 (405)
T ss_pred ccCCc-cceEEecc-CcceeeeeccCCcEEEEEcccc------------chhhhhhcccc-ceeEEEecCCCCEeeeecC
Confidence 34444 78999999 9999999999999999999998 67778999997 8999999999999999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
|..|.+||+..+... ..+ ....+|+.+.|+|...+.+++
T Consensus 86 D~si~lwDl~~gs~l----------------------------------------~ri-rf~spv~~~q~hp~k~n~~va 124 (405)
T KOG1273|consen 86 DWSIKLWDLLKGSPL----------------------------------------KRI-RFDSPVWGAQWHPRKRNKCVA 124 (405)
T ss_pred CceeEEEeccCCCce----------------------------------------eEE-EccCccceeeeccccCCeEEE
Confidence 999999999865432 222 236789999999988677776
Q ss_pred ecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-c
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-A 264 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~ 264 (387)
.-.+..-.+-++.......+-.-.. -.....+..|++ .|+++++|...|.+.++|..+ .+++..++... .
T Consensus 125 ~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t------~e~vas~rits~~ 197 (405)
T KOG1273|consen 125 TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET------LECVASFRITSVQ 197 (405)
T ss_pred EEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch------heeeeeeeechhe
Confidence 6666666666665543111111100 011122335788 899999999999999999999 88888887666 7
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEccCCCeEEEEecC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
.|..+.++..|+++ +.-+.|+.||.|+++.....-..... .....+.. ....=..++|+.+|.|++++.+
T Consensus 198 ~IK~I~~s~~g~~l-iiNtsDRvIR~ye~~di~~~~r~~e~------e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~- 269 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFL-IINTSDRVIRTYEISDIDDEGRDGEV------EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA- 269 (405)
T ss_pred eeeEEEEeccCcEE-EEecCCceEEEEehhhhcccCccCCc------ChhHHHHHHHhhhhhhheeecCCccEEEeccc-
Confidence 89999999999975 57888999999999853222100000 00001100 1123357789999999987543
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhhhhhccC-ceEEEeeecC
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP 387 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~f~P 387 (387)
.-..++||.-. .|.+++.+.|.+ .....|+|+|
T Consensus 270 ------~aHaLYIWE~~------~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 270 ------RAHALYIWEKS------IGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred ------cceeEEEEecC------CcceeeeecCCchhheeeccccc
Confidence 34899999999 899999988877 4566677765
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.6e-27 Score=179.37 Aligned_cols=302 Identities=17% Similarity=0.233 Sum_probs=215.8
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCc--ccccCCC-CCCCeEEEeccCCCceEEEEECC-CCCEEEE
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--HAVLGAT-NSRPDLILTGHQDNAEFALAMCP-TEPYVLS 104 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s 104 (387)
.|.+.|+++..-+..++++++|+.||.|.+||++..... ..+..+. .......-.+|.- .|..+.|-| |...+.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky-~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKY-AISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcccee-eeeeeEEeeecCceeec
Confidence 599999999999999999999999999999999876421 1111100 0001112244555 588999998 6668889
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
++.|.++++||.++.+....+...... .......-...+.+..+..+++-+...+.....+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999988766554433222 1111111223344555667777888889999999999999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCC-------------CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 181 SAQEFCSVGDDSCLILWDARVGT-------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
.+..|++|+.||.|++||++... .|..+.-..|.+.++.++|.. ++.++++++.|..+++|+..+.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccC
Confidence 98899999999999999998641 223333557889999999999 9999999999999999999874
Q ss_pred CCCC--CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 248 TSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 248 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
.+.. .++.+..-+.| -.+. +. +-+.. +|+---.++.+.++++-.+ ..+..+..|-..|.
T Consensus 279 ~ntl~~~g~~~~n~~~~-~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k~i~ 339 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTS-FAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLKRIN 339 (397)
T ss_pred ccccccccccccccccc-ceEE-Ee-ecccc-eEEEEecCCeEEEEEccCc---------------eEEEeeecccceee
Confidence 3211 01111111111 1111 22 22222 3434445688888888775 34677788888899
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.++.|+-+... +|..|+.|..|-..
T Consensus 340 c~~~~~~fq~~~--------tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 340 CAAYRPDFEQCF--------TGDMNGNIYMWSPA 365 (397)
T ss_pred EEeecCchhhhh--------ccccCCcccccccc
Confidence 999999988888 99999999999873
No 118
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=181.30 Aligned_cols=205 Identities=20% Similarity=0.413 Sum_probs=174.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
+..+.|..-|.+++|+. +.++|+||+.+..++|||++..+ .+...+.+|++ .|..+.|....+.+++
T Consensus 94 lhsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~-----------App~E~~ghtg-~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPK-----------APPKEISGHTG-GIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCCC-----------CCchhhcCCCC-cceeEEEeccCceEEe
Confidence 45578999999999998 88999999999999999998874 56677899998 5899999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|++||+||.+++..... +. ...+|+++.++++| .
T Consensus 161 Sadd~tVRLWD~rTgt~v~s----------------------------------------L~-~~s~VtSlEvs~dG-~- 197 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQS----------------------------------------LE-FNSPVTSLEVSQDG-R- 197 (334)
T ss_pred eccCCceEEEEeccCcEEEE----------------------------------------Ee-cCCCCcceeeccCC-C-
Confidence 99999999999997654322 21 24679999999998 4
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-cccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHS 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~ 263 (387)
+++....+.|.+||..+.. .++.. .-+..|.+...+| +...+++|+.|..++.||..+ +..+..+ ++|.
T Consensus 198 ilTia~gssV~Fwdaksf~--~lKs~-k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T------geEi~~~nkgh~ 267 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKSFG--LLKSY-KMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT------GEEIGSYNKGHF 267 (334)
T ss_pred EEEEecCceeEEecccccc--ceeec-cCccccccccccC-CCceEEecCcceEEEEEeccC------CceeeecccCCC
Confidence 5566677899999998877 34443 3456789999999 789999999999999999999 8888876 8999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
++|.|+.|+|+|. +.|+|++||+|++|.+...
T Consensus 268 gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 268 GPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 9999999999999 6899999999999998764
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=208.81 Aligned_cols=234 Identities=20% Similarity=0.382 Sum_probs=205.8
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
......|...|.|+..-. ..+.+++|+.|-.+-+|.+... ..+..+.+|.. +|.++.|+++...|+
T Consensus 21 ~~~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp------------~~i~S~~~hes-pIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKP------------NAITSLTGHES-PIESLTFDTSERLLA 86 (825)
T ss_pred chhhhhhhhhhceeeeec-cceeeccCCCceeeccccccCC------------chhheeeccCC-cceeeecCcchhhhc
Confidence 345557999999998744 8899999999999999998877 66777999998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.+|+|++||++... .+..+.+|...+..+.|+|-+ .
T Consensus 87 agsasgtiK~wDleeAk----------------------------------------~vrtLtgh~~~~~sv~f~P~~-~ 125 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAK----------------------------------------IVRTLTGHLLNITSVDFHPYG-E 125 (825)
T ss_pred ccccCCceeeeehhhhh----------------------------------------hhhhhhccccCcceeeeccce-E
Confidence 99999999999998543 236788999999999999999 8
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
++++|+.|+.+++||.+... +...+.+|...+..+.|+| +|++++.|+.|..+++||+.. ++...+|+.|+
T Consensus 126 ~~a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e 196 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHE 196 (825)
T ss_pred EeccccccccceehhhhccC--ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccc------ccccccccccc
Confidence 88999999999999999766 6778888999999999999 999999999999999999998 99999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
+.+..+.|+|..- |+++|+.|+++++||+++. ..+.........|.+.+|+|++..++
T Consensus 197 ~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletf---------------e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 197 GKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETF---------------EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred ccccccccCchhh-hhccCCCCceeeeecccee---------------EEeeccCCccCCceeeeecCCceeee
Confidence 9999999999775 7899999999999999974 34444455567899999999987655
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7e-27 Score=193.96 Aligned_cols=311 Identities=15% Similarity=0.162 Sum_probs=223.1
Q ss_pred cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
|........||++.|.||...| .|.+||+|+.||+|+||.+.++ +++..+.--. .|.|++|+|.+
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~Tg------------Rcvr~~~~d~--~I~~vaw~P~~ 453 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATG------------RCVRTVQFDS--EIRSVAWNPLS 453 (733)
T ss_pred cceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecc------------eEEEEEeecc--eeEEEEecCCC
Confidence 3345567779999999999999 9999999999999999999999 6777666544 69999999987
Q ss_pred CE--EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC----CCceeecCCCCCeE
Q 016547 100 PY--VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV----GPRGIYNGHEDTVE 173 (387)
Q Consensus 100 ~~--l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~ 173 (387)
.. ||++- ...+.+-+..-+................ .....+..+..|..... .-+...-.|...|.
T Consensus 454 ~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~-------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~ 525 (733)
T KOG0650|consen 454 DLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAP-------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR 525 (733)
T ss_pred CceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCC-------CccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence 63 44443 4446665544331111111110000000 01111223333333211 11345557889999
Q ss_pred EEEEccCCCeeEEEecC---CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 174 DVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
.+.|+..| .+|++... ...|.|+++.... ....+....+.|.++.|+| ...+|++++ ...|++||+..
T Consensus 526 ~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~--sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~k---- 596 (733)
T KOG0650|consen 526 QVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRK--SQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSK---- 596 (733)
T ss_pred eeeeecCC-ceEEEeccCCCcceEEEEeccccc--ccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhH----
Confidence 99999999 67777654 3568999998776 3345555678899999999 677777765 56799999997
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
...+..+......|..++.+|.|.+|+ .|+.|+.+..||+....++ ..++.-|...+++++|+
T Consensus 597 --qelvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskP--------------yk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 597 --QELVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKP--------------YKTLRLHEKAVRSVAFH 659 (733)
T ss_pred --HHHHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcch--------------hHHhhhhhhhhhhhhhc
Confidence 777777777778899999999999865 8899999999999986544 45567899999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEec---CCCcccccchhhhhhhccCce----EEEeeecC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRM---SDLIYRPQDEVLAELEKFKAH----VISCTSKP 387 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~---~~~~~~~~~~~~~~~~~~~~~----v~~~~f~P 387 (387)
+.-+.++ +|+.||++.|+.- +++..++.--+++.+.+|... |..+.|||
T Consensus 660 ~ryPLfa--------s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 660 KRYPLFA--------SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred cccceee--------eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 9877554 5666699999973 344445556678899999876 99999998
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=198.54 Aligned_cols=310 Identities=14% Similarity=0.240 Sum_probs=225.4
Q ss_pred eeeeeecCC-CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCC
Q 016547 23 KKHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEP 100 (387)
Q Consensus 23 ~~~~~~~h~-~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~ 100 (387)
+....+.|. +.|+.++|-.++..++|+|+..|.+.+||++.. +....+. .|.+ .|....|.|...
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k------------kl~~v~~nah~~-sv~~~~fl~~ep 301 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK------------KLINVTRNAHYG-SVTGATFLPGEP 301 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC------------eeeeeeeccccC-CcccceecCCCc
Confidence 345566785 999999999877778899999999999999988 4444444 6765 578999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcCcc---cc-----CCCc-cc----------CCCCCCceeccC------------------
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSS---AT-----DPAT-AK----------SAGSSGSIIKQS------------------ 143 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~---~~-----~~~~-~~----------~~~~~~~~~~~~------------------ 143 (387)
.+++++.|+++++|-.+++.... .. .|.. .. ....+.......
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 99999999999999776331100 00 0000 00 000000000000
Q ss_pred ---------------------CC--------------CCCCCCCCCCCCCCCC-ceee-----cCCCCCeEEEEEccCCC
Q 016547 144 ---------------------PK--------------PGDGNDKAADGPSVGP-RGIY-----NGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 144 ---------------------~~--------------~~~~~~~~~~~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~ 182 (387)
.. .+......|+...... ...+ +.....+++++.++-|
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG- 460 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG- 460 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-
Confidence 00 0011111121111111 0111 1123568889999998
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
++.+.|...|.|-+|++.++- ....+ +.|..+|+.++.+. .++.+++++.+|.+.+||... ...+..+
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~------k~l~~~l 531 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK------KVLKKSL 531 (910)
T ss_pred ceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC------cceeeee
Confidence 899999999999999999987 33344 58999999999998 899999999999999999998 6666666
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
. -...+.++..+.... ++|.+.+|-.|+++|+.+. ..+..+.+|.+.|++++|||||++++
T Consensus 532 ~-l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------------kvvR~f~gh~nritd~~FS~DgrWli-- 592 (910)
T KOG1539|consen 532 R-LGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------------KVVREFWGHGNRITDMTFSPDGRWLI-- 592 (910)
T ss_pred c-cCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------------hhhHHhhccccceeeeEeCCCCcEEE--
Confidence 6 456788888887776 6788889999999999875 45777899999999999999999998
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.+.|++|++||+. ++.++..+. ...+..++.|||
T Consensus 593 ------sasmD~tIr~wDlp------t~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 593 ------SASMDSTIRTWDLP------TGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred ------EeecCCcEEEEecc------CcceeeeEe-cCCcceeeEECC
Confidence 77778999999999 788777665 578889999988
No 122
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.96 E-value=2.4e-26 Score=177.03 Aligned_cols=280 Identities=15% Similarity=0.361 Sum_probs=208.0
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC-------CCCCEEEEec
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-------PTEPYVLSGG 106 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~-------~~~~~l~s~~ 106 (387)
...+.|+| +|..|++-+.|..+.+|++....-.....+.........++-..+..|...+|- |+..++++.+
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34678999 888899999999999999875432222222222233444555555568888886 5678999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC---CeEEEEEccCCCe
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED---TVEDVTFCPSSAQ 183 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 183 (387)
.|.-|.+||.-++.....+.. ..|.+ ...+++|+||| .
T Consensus 131 r~~PIh~wdaftG~lraSy~~--------------------------------------ydh~de~taAhsL~Fs~DG-e 171 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRA--------------------------------------YDHQDEYTAAHSLQFSPDG-E 171 (406)
T ss_pred ccCceeeeeccccccccchhh--------------------------------------hhhHHhhhhheeEEecCCC-C
Confidence 999999999987654433221 12332 24689999999 5
Q ss_pred eEEEecCCCeEEEEEc-cCCCCceeEE-----eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 184 EFCSVGDDSCLILWDA-RVGTSPVIKV-----EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~-~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
.|++ +....|+++|+ +.+..-.... ..+..+-|.+++|+|.+...+++|+.-..+-||.-.. ..++.
T Consensus 172 qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~ 244 (406)
T KOG2919|consen 172 QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQ 244 (406)
T ss_pred eEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCcee
Confidence 5554 46789999999 5444211211 2234677899999998888999999999999998877 78999
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC---CeeEEEEccCCC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDP 334 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 334 (387)
.+.+|.+.|+.+.|.++|..++..+-.|-.|..||++....+ +..+..|.+ .-.-+...|+++
T Consensus 245 llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p--------------v~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 245 LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP--------------VYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch--------------hhhhhhhccCccceEEEecCCCCc
Confidence 999999999999999999988754556889999999986554 334444444 223455678899
Q ss_pred eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+ +|+.||.|++||+.. -+.....+..|+..|+.|+++|
T Consensus 311 ~La--------sG~tdG~V~vwdlk~-----~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 311 ILA--------SGDTDGSVRVWDLKD-----LGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred eee--------ccCCCccEEEEecCC-----CCCcccccccccccccceecCc
Confidence 888 999999999999995 3777888888999999999988
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9e-26 Score=172.77 Aligned_cols=255 Identities=15% Similarity=0.221 Sum_probs=193.9
Q ss_pred eeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE
Q 016547 3 LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL 82 (387)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
.|+....+...+.. .....+.|..++.+++|.+ ...+++|+.||.|+.+|+.++ ....+
T Consensus 32 sWDgslrlYdv~~~------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~-------------~~~~i 90 (323)
T KOG1036|consen 32 SWDGSLRLYDVPAN------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTG-------------NEDQI 90 (323)
T ss_pred eccCcEEEEeccch------hhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCC-------------cceee
Confidence 46666666555443 2345668999999999987 456889999999999999988 33456
Q ss_pred eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547 83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 162 (387)
Q Consensus 83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (387)
..|.. +|.||.+++....+++|+.|++|++||.+........
T Consensus 91 gth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~------------------------------------- 132 (323)
T KOG1036|consen 91 GTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF------------------------------------- 132 (323)
T ss_pred ccCCC-ceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------------
Confidence 66776 7999999998889999999999999999853222111
Q ss_pred eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
.....|.++.... +.|++|+.+..+.+||++....+.......-+-.++++++-| ++.=+++++.||.|.+=
T Consensus 133 ----d~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 133 ----DQGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ----ccCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence 1134788888763 568999999999999999987655444455566889999999 88888999999998875
Q ss_pred EeccCCCCCCCCceEEecccc---------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCcee
Q 016547 243 DRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 313 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 313 (387)
.+...+ ........|+.|. -+|++|+|+|-... ||+|+.||.|.+||+...+ .
T Consensus 205 ~~d~s~--~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-faTgGsDG~V~~Wd~~~rK---------------r 266 (323)
T KOG1036|consen 205 YFDDSE--EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-FATGGSDGIVNIWDLFNRK---------------R 266 (323)
T ss_pred ccCCch--HHhhhceeEEeeecccCCceEEEEeceeEeccccce-EEecCCCceEEEccCcchh---------------h
Confidence 554420 0023445555553 37999999998764 7899999999999998742 2
Q ss_pred eeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 314 FFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 314 ~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
+..+...+..|.+++|+.+|..|++++|.
T Consensus 267 l~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 267 LKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred hhhccCCCCceEEEEeccCCCeEEEEech
Confidence 44556667789999999999998887763
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=208.90 Aligned_cols=244 Identities=21% Similarity=0.397 Sum_probs=206.9
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 124 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 124 (387)
.+++..-.+-.+++||.+.. ..|.. .|.++..-..++.+++|+.|..+-+|.+.+..
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~------------------~~hsa-av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---- 61 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREF------------------VAHSA-AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---- 61 (825)
T ss_pred cccceeeeeeccccccchhh------------------hhhhh-hhceeeeeccceeeccCCCceeeccccccCCc----
Confidence 34444445556677776543 34555 57787776678899999999999999886432
Q ss_pred cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547 125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 204 (387)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 204 (387)
.+..+.+|..+|.++.|++.. .++++|+.+|+|++||++..+
T Consensus 62 ------------------------------------~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk- 103 (825)
T KOG0267|consen 62 ------------------------------------AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK- 103 (825)
T ss_pred ------------------------------------hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh-
Confidence 234578999999999999987 899999999999999999887
Q ss_pred ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC
Q 016547 205 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 284 (387)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~ 284 (387)
.++.+.+|...+.++.|+| -+.+++.|+.|+.+++||.+. ..+.+.+.+|...+..+.|+|+|++ ++++++
T Consensus 104 -~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~e 174 (825)
T KOG0267|consen 104 -IVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRW-VASGGE 174 (825)
T ss_pred -hhhhhhccccCcceeeecc-ceEEeccccccccceehhhhc------cCceeeecCCcceeEEEeecCCCce-eeccCC
Confidence 6788999999999999999 899999999999999999998 7899999999999999999999996 679999
Q ss_pred CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547 285 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 364 (387)
Q Consensus 285 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~ 364 (387)
|..++|||...+ .+...+..|+..+..+.|+|.. +|++ +||.|++|++||+.
T Consensus 175 d~tvki~d~~ag---------------k~~~ef~~~e~~v~sle~hp~e-~Lla-------~Gs~d~tv~f~dle----- 226 (825)
T KOG0267|consen 175 DNTVKIWDLTAG---------------KLSKEFKSHEGKVQSLEFHPLE-VLLA-------PGSSDRTVRFWDLE----- 226 (825)
T ss_pred cceeeeeccccc---------------ccccccccccccccccccCchh-hhhc-------cCCCCceeeeeccc-----
Confidence 999999999875 4566788999999999999965 4444 88899999999999
Q ss_pred ccchhhhhhhccCceEEEeeecC
Q 016547 365 PQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 365 ~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+-+.+.........|.+++|.|
T Consensus 227 -tfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 227 -TFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred -eeEEeeccCCccCCceeeeecC
Confidence 6777777777788999999986
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-26 Score=185.04 Aligned_cols=289 Identities=12% Similarity=0.210 Sum_probs=209.6
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~ 109 (387)
.+.|+++.|+| ...+|++++.||+++||.++.... ..++.+.-... +|.+.+|.|+|. .+++++...
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N----------~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVN----------PKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccC----------hhheeeeeccC-ccceeeecCCCceEEEecccce
Confidence 58899999999 889999999999999999987631 33444443343 789999999999 899999999
Q ss_pred eEEEEEcCCCcCccccCCCccc-------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 110 SVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
....||+.+.+......+.... ..+.... ........+.+.+....+.+.+..++- .+.|..+.|+.++
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSds- 356 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDS- 356 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCC-
Confidence 9999999887554433332222 0111111 222233445555555555555555443 4679999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
..|++++.+|.|.+||++... ++..+.... -.-++++.++ ++.+||+|+..|.|.|||..+-......+++..+..
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence 777777888999999999886 555554322 2335777788 899999999999999999776444444678888887
Q ss_pred ccceEEEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
-...|+++.|+++.+ |||.++ .+..+++-.+........ +|. ....-+.|++|+|+|.+.+|+
T Consensus 434 Ltt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsN-------fP~-----~n~~vg~vtc~aFSP~sG~lA-- 498 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSN-------FPT-----SNTKVGHVTCMAFSPNSGYLA-- 498 (514)
T ss_pred hheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeecc-------CCC-----CCCcccceEEEEecCCCceEE--
Confidence 788999999999998 566666 466788888876422111 111 022335789999999999988
Q ss_pred ecCCCCCCCCCceEEEEecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~ 359 (387)
.|..+|.|.+|.+.
T Consensus 499 ------vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 499 ------VGNEAGRVHLFKLH 512 (514)
T ss_pred ------eecCCCceeeEeec
Confidence 78888999999986
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=2.3e-25 Score=187.28 Aligned_cols=262 Identities=11% Similarity=0.106 Sum_probs=185.3
Q ss_pred cCCCcEEEEEecCCCCcE-EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ec
Q 016547 29 IHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GG 106 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~ 106 (387)
.+...+.+++|+| +++. +++++.++.|++||..++ +....+..+.. +..++|+|+++.+++ ++
T Consensus 28 ~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 28 PVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATG------------EVIGTLPSGPD--PELFALHPNGKILYIANE 92 (300)
T ss_pred ECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCC------------cEEEeccCCCC--ccEEEECCCCCEEEEEcC
Confidence 3344578899999 5554 477788999999999887 44444544443 457899999997754 45
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.|+.|++||+.+.... ..+. +...+.+++|+|++ .+++
T Consensus 93 ~~~~l~~~d~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~dg-~~l~ 130 (300)
T TIGR03866 93 DDNLVTVIDIETRKVL----------------------------------------AEIP-VGVEPEGMAVSPDG-KIVV 130 (300)
T ss_pred CCCeEEEEECCCCeEE----------------------------------------eEee-CCCCcceEEECCCC-CEEE
Confidence 6899999999753221 1111 12345789999999 6777
Q ss_pred EecCCC-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547 187 SVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHS- 263 (387)
Q Consensus 187 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~- 263 (387)
+++.++ .+.+||.++.+ ...... ....+..++|+| ++++|+++ ..++.|++||+++ ++.+..+..+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~~ 200 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYE--IVDNVL-VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEIP 200 (300)
T ss_pred EEecCCCeEEEEeCCCCe--EEEEEE-cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeeccc
Confidence 776654 57788987765 232222 334567899999 88877544 4699999999998 66655543221
Q ss_pred ------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 264 ------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 264 ------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
.....++|+|++++++++.+.++.+.+||+++... .... .+...+.+++|+|++++++
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---------------~~~~-~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---------------LDYL-LVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---------------EEEE-EeCCCcceEEECCCCCEEE
Confidence 12346889999998766666678899999976421 2111 2345788999999999988
Q ss_pred EEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
++. +.+|.|++||+. +++++.+++.. ...+.++|+|
T Consensus 265 ~~~-------~~~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 265 TTN-------GVSNDVSVIDVA------ALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEc-------CCCCeEEEEECC------CCcEEEEEEcc-cccceeEeCC
Confidence 533 445999999999 78888888754 6669999987
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.3e-26 Score=196.80 Aligned_cols=263 Identities=17% Similarity=0.333 Sum_probs=205.4
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
..|.+.-+.|+|.| ++++|.+++.||.|++|+....+. .|.. +..+.. .|.+++. ++.+|++|+.
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e----------~P~t-i~~~g~-~v~~ia~--~s~~f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEE----------EPET-IDISGE-LVSSIAC--YSNHFLTGSE 74 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCccc----------CCch-hhccCc-eeEEEee--cccceEEeec
Confidence 47999999999999 888999999999999999876621 1111 111333 5666665 5669999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
+++|.+|.+..+.. -..+...+-++++++++.+| .+++.
T Consensus 75 ~~tv~~y~fps~~~----------------------------------------~~iL~Rftlp~r~~~v~g~g-~~iaa 113 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEE----------------------------------------DTILARFTLPIRDLAVSGSG-KMIAA 113 (933)
T ss_pred cceEEEeeCCCCCc----------------------------------------cceeeeeeccceEEEEecCC-cEEEe
Confidence 99999999875432 13344556789999999998 89999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc------
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG------ 261 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~------ 261 (387)
|+.|-.|++-++.+.. ....+.+|.++|.++.|+| .+++||+.+.||.|++||+.+ +.....+.+
T Consensus 114 gsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 114 GSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDNE 184 (933)
T ss_pred ecCceeEEEEeccccc--hheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCcccc
Confidence 9999999999998877 5778889999999999999 999999999999999999998 555544432
Q ss_pred --ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 262 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 262 --~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
....+..++|+|+|..+ +..+.|+.|++|+....... .......+...+..+.|+|+|.||+
T Consensus 185 ~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~we~~-------------f~Lr~~~~ss~~~~~~wsPnG~YiA-- 248 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGWELQ-------------FKLRDKLSSSKFSDLQWSPNGKYIA-- 248 (933)
T ss_pred ccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCceeh-------------eeecccccccceEEEEEcCCCcEEe--
Confidence 13567889999997765 46667999999999886332 1222233555699999999999998
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++.||.|.|||+. +- +-......|.+++|.|
T Consensus 249 ------As~~~g~I~vWnv~------t~----~~~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 249 ------ASTLDGQILVWNVD------TH----ERHEFKRAVCCEAWKP 280 (933)
T ss_pred ------eeccCCcEEEEecc------cc----hhccccceeEEEecCC
Confidence 78888999999999 41 1133456788888876
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=186.42 Aligned_cols=286 Identities=16% Similarity=0.241 Sum_probs=204.8
Q ss_pred ecCCCcEEEEEecCCCC-cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEe
Q 016547 28 IIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 105 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~ 105 (387)
.-|.+.|++++|+|... .++|+|..-|+|-+||+.+.+. ....+..+..|.. +|.+|.|+|. ...+++.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~-~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSG-PVSGLKFSPANTSQIYSS 253 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCc-cccceEecCCChhheeee
Confidence 34889999999999655 7999999999999999964321 1245677888887 7999999995 4578999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
|.||+|++-|+++...... ..+......+..+.|+.+. ..+
T Consensus 254 SyDGtiR~~D~~~~i~e~v--------------------------------------~s~~~d~~~fs~~d~~~e~-~~v 294 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEV--------------------------------------LSLDTDNIWFSSLDFSAES-RSV 294 (498)
T ss_pred ccCceeeeeeecchhhHHH--------------------------------------hhcCccceeeeeccccCCC-ccE
Confidence 9999999999987543211 1122234457778888877 566
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
+.+..=|...+||+++... ....+..|...|++|+++|....+|++++.|++.+|||+|...... .++...-.|...
T Consensus 295 l~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~Hrrs 371 (498)
T KOG4328|consen 295 LFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRS 371 (498)
T ss_pred EEeecccceEEEEeecCCc-cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--Ccceecccccce
Confidence 7777777999999999874 2455667888999999999888999999999999999999865321 134455569999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d 343 (387)
|.+..|||.+.. |++.+.|..|+|||..-.+... .+...+..-.-+.. .....+|.|+..+++
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~--------~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~------ 436 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKD--------EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV------ 436 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeecccccccC--------CccceeeccCcccccccchhheeCCCccEEE------
Confidence 999999999887 5688899999999985211110 00111111111212 345568999877666
Q ss_pred CCCCCCCceEEEEecCCCcccccchhhhhhhccCc-eEEEe-eecC
Q 016547 344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA-HVISC-TSKP 387 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~f~P 387 (387)
+|-.-..|-|+|-. .++.+.++..... .|.++ .|||
T Consensus 437 --vg~~~r~IDv~~~~------~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 437 --VGRYPRPIDVFDGN------GGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred --EeccCcceeEEcCC------CCEEeeeccCccccccccceeecc
Confidence 44555789999988 5665665543332 44443 4554
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-27 Score=212.25 Aligned_cols=279 Identities=16% Similarity=0.325 Sum_probs=213.7
Q ss_pred ceeeccccccCcceeeeeeecCCCcEEEEEecCCCCc---EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc
Q 016547 9 LLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH 85 (387)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h 85 (387)
.++.++.......++..-.+.-...-+.++|.+.... +||.|..||.|.+||...... ......+.....|
T Consensus 42 Eifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 42 EIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NASEEVLATKSKH 115 (1049)
T ss_pred ceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc------CcchHHHhhhccc
Confidence 3444444433333444444455667789999984333 599999999999999876411 1122456678889
Q ss_pred CCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 86 QDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 86 ~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
++ .|..+.|++... .|++|+.||.|.|||+++........
T Consensus 116 ~G-~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------------------------------------- 156 (1049)
T KOG0307|consen 116 TG-PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-------------------------------------- 156 (1049)
T ss_pred CC-ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------------------------------------
Confidence 88 799999999655 99999999999999998743221110
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC--CCeeEEEecCCCCCeEEEeeCCC---eE
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSADN---SV 239 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg---~i 239 (387)
-....+.|.+++|+..-.++|++++.+|.+.|||++..+ .+..+..+. ..+..++|+|.....+++++.|. .|
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 112357899999998877899999999999999999886 333343333 35779999997777888887764 69
Q ss_pred EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
.+||+|.. ..+++.+++|+..|.++.|++.+..++++++.|+.|.+|+.+++ +.+..+..
T Consensus 235 qlWDlR~a-----ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---------------Evl~~~p~ 294 (1049)
T KOG0307|consen 235 QLWDLRFA-----SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---------------EVLGELPA 294 (1049)
T ss_pred Eeeccccc-----CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---------------eEeeecCC
Confidence 99999975 57888899999999999999998667889999999999999985 45666777
Q ss_pred CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
...++..+.|+|..+.++++++- ||.|.||.+...
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asf-------dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASF-------DGKISIYSLQGT 329 (1049)
T ss_pred CCcceeeeeecCCCcchhhhhee-------ccceeeeeeecC
Confidence 78899999999999988875554 499999999854
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=8.1e-27 Score=183.11 Aligned_cols=229 Identities=18% Similarity=0.369 Sum_probs=178.6
Q ss_pred EeccCCCceEEEEECCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 159 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (387)
...|.+ .++-+.-++-+ .+.++=+..|.|.||++........... ........
T Consensus 147 ~i~h~g-~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------------------~~~~~s~~ 201 (440)
T KOG0302|consen 147 SIPHYG-GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG------------------------LEVKDSEF 201 (440)
T ss_pred cccccc-ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc------------------------cccccccc
Confidence 344555 56777776654 4566677889999999975422211110 00111456
Q ss_pred CCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547 160 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNS 238 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 238 (387)
+++.++.+|...-.++.|+|.....+++|.--+.|++|...++.+.. ...+.+|...|-.++|+|.....|++|+.||+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence 78889999999999999999654468898888999999998876422 23466799999999999988899999999999
Q ss_pred EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
|+|||+|... .+.....++|.+.|+-|.|+..-. +||+|++||.++|||++..... +.+..+.
T Consensus 282 IrIWDiRs~~----~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~------------~pVA~fk 344 (440)
T KOG0302|consen 282 IRIWDIRSGP----KKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG------------QPVATFK 344 (440)
T ss_pred EEEEEecCCC----ccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC------------CcceeEE
Confidence 9999999843 233344488999999999999888 7899999999999999985322 4578889
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
-|..+|+++.|+|.....++ ++|.|+.|.|||+.
T Consensus 345 ~Hk~pItsieW~p~e~s~ia-------asg~D~QitiWDls 378 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIA-------ASGEDNQITIWDLS 378 (440)
T ss_pred eccCCeeEEEeccccCceEE-------eccCCCcEEEEEee
Confidence 99999999999999888777 55666999999997
No 131
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-25 Score=170.77 Aligned_cols=241 Identities=20% Similarity=0.299 Sum_probs=186.5
Q ss_pred cCCCcEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
.++-.|..++|..... .++.++. |.+|+..++.+. +.++.+.||.. .|+.|+.+|-+..+++++
T Consensus 54 skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN------------kylRYF~GH~~-~V~sL~~sP~~d~FlS~S 119 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN------------KYLRYFPGHKK-RVNSLSVSPKDDTFLSSS 119 (311)
T ss_pred cccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC------------ceEEEcCCCCc-eEEEEEecCCCCeEEecc
Confidence 4556788888887444 4444444 889999999999 89999999998 799999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.|++|++||++...+. ..+. ...-..++|.|+| -++|
T Consensus 120 ~D~tvrLWDlR~~~cq----------------------------------------g~l~--~~~~pi~AfDp~G-LifA 156 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQ----------------------------------------GLLN--LSGRPIAAFDPEG-LIFA 156 (311)
T ss_pred cCCeEEeeEecCCCCc----------------------------------------eEEe--cCCCcceeECCCC-cEEE
Confidence 9999999999854331 1111 1222357899999 7888
Q ss_pred EecCCCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
++.....|++||++.-.......+. +.....+.|.|+| +|++++.++..+.+++.|.-. +..+.++..+.
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~ 229 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYP 229 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccC------CcEeeeEeecc
Confidence 8888779999999986432333332 3466789999999 999999999999999999998 88888887665
Q ss_pred ceE---EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEE
Q 016547 264 AAV---LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 264 ~~i---~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s 339 (387)
..- ....|.||+++++ +|+.||+|.+|+++++.+ +..+.+ +.+++.++.|+|....++ +
T Consensus 230 ~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~tg~~---------------v~~~~~~~~~~~~~~~fnP~~~mf~-s 292 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLETGKK---------------VAVLRGPNGGPVSCVRFNPRYAMFV-S 292 (311)
T ss_pred CCCCcceeEEECCCCcEEE-EecCCCcEEEEEcCCCcE---------------eeEecCCCCCCccccccCCceeeee-e
Confidence 332 5788999999765 999999999999988633 444555 788999999999755433 3
Q ss_pred ecCCCCCCCCCceEEEEecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~ 359 (387)
+ +..+.+|=..
T Consensus 293 a---------~s~l~fw~p~ 303 (311)
T KOG1446|consen 293 A---------SSNLVFWLPD 303 (311)
T ss_pred c---------CceEEEEecc
Confidence 2 2578888665
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=193.84 Aligned_cols=291 Identities=14% Similarity=0.204 Sum_probs=215.9
Q ss_pred ceeeeeeecCCCcEEEEEecCC----------CCcEEEEecCCCcEEEEeccCCCCcccc----c---------CCCCC-
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQ----------NTKIVATHTDSPDVLIWDVEAQPNRHAV----L---------GATNS- 76 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~----------~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~---------~~~~~- 76 (387)
..+....+-|...|+.+.-.|- -...++|++.|++|++||++.......+ . .....
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 3445566779999999886661 1246899999999999999874322110 0 00000
Q ss_pred -----------CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCC
Q 016547 77 -----------RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 145 (387)
Q Consensus 77 -----------~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (387)
+.....-+... .+.+++.+|+|++|++|..-|.++||++.+..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~-G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~------------------------- 492 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRF-GFRALAVSPDGQHLASGDRGGNLRVYDLQELE------------------------- 492 (1080)
T ss_pred hhhhccCCcccccchhhcCccc-ceEEEEECCCcceecccCccCceEEEEehhhh-------------------------
Confidence 01111111122 48899999999999999999999999997532
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec
Q 016547 146 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223 (387)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (387)
.......|..+|.|+.|+.. +..+|++++.|..|++||+...-. .+..+.+|.+.|+++.|.
T Consensus 493 ---------------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 493 ---------------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred ---------------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhhcccccceeEEEEe
Confidence 23556789999999999753 346899999999999999976553 567788999999999998
Q ss_pred CCCC--CeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-----ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 224 PLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 224 ~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
- .+ ..+++++.|..|.+--.+. ......+.. ....++.++..|..++ +++++.|..|+|||+..+
T Consensus 557 ~-~gln~~MiscGADksimFr~~qk------~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 557 C-NGLNRKMISCGADKSIMFRVNQK------ASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-VVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred e-cCCceEEEeccCchhhheehhcc------ccCceeccccccccccceEEEeeeCCCcce-EEEEecccceEEEecccc
Confidence 7 54 7889999998875432221 111111111 2357899999999996 569999999999999996
Q ss_pred CceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547 297 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
++. +.+..-.+|++....+...|.|-|++.+| .|.++.++|+. +++++..+.||
T Consensus 629 Kq~------------k~FKgs~~~eG~lIKv~lDPSgiY~atSc--------sdktl~~~Df~------sgEcvA~m~GH 682 (1080)
T KOG1408|consen 629 KQV------------KSFKGSRDHEGDLIKVILDPSGIYLATSC--------SDKTLCFVDFV------SGECVAQMTGH 682 (1080)
T ss_pred cee------------eeecccccCCCceEEEEECCCccEEEEee--------cCCceEEEEec------cchhhhhhcCc
Confidence 443 23444456888889999999999999544 45899999999 89999999999
Q ss_pred CceEEEeeecC
Q 016547 377 KAHVISCTSKP 387 (387)
Q Consensus 377 ~~~v~~~~f~P 387 (387)
...|+.+.|.|
T Consensus 683 sE~VTG~kF~n 693 (1080)
T KOG1408|consen 683 SEAVTGVKFLN 693 (1080)
T ss_pred chheeeeeecc
Confidence 99999999975
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=188.49 Aligned_cols=268 Identities=16% Similarity=0.248 Sum_probs=214.5
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-+.+|.+++|+. ..+.||.+-.||.|.||++... +-....+.++.++.|.+++|+ ++..|.+.+.+|
T Consensus 24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~-----------w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg 90 (691)
T KOG2048|consen 24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN-----------WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG 90 (691)
T ss_pred eccceEEEEEec-cCCceeeeccCCcEEEEccCCC-----------ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCc
Confidence 478999999999 6677999999999999999876 255677889999999999999 566788888899
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+|.-||+.+... +..+....+.|++++.+|.+ ..++.|+
T Consensus 91 ~i~EwDl~~lk~----------------------------------------~~~~d~~gg~IWsiai~p~~-~~l~Igc 129 (691)
T KOG2048|consen 91 SITEWDLHTLKQ----------------------------------------KYNIDSNGGAIWSIAINPEN-TILAIGC 129 (691)
T ss_pred eEEEEecccCce----------------------------------------eEEecCCCcceeEEEeCCcc-ceEEeec
Confidence 999999986433 34555567899999999998 7899999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-------ec-c
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-------FE-G 261 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-------~~-~ 261 (387)
.||.+..++...++....+.+....+.+.+++|+| ++..+++|+.||.|++||... +..+.. +. .
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKR 202 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccC
Confidence 99988888887776444455556678999999999 999999999999999999998 544441 11 1
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
...-|.++.|-.++. +++|..-|+|.+||-..+ .++..+..|...|.+++..+++++++
T Consensus 203 ~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~g---------------TLiqS~~~h~adVl~Lav~~~~d~vf---- 261 (691)
T KOG2048|consen 203 EPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFG---------------TLIQSHSCHDADVLALAVADNEDRVF---- 261 (691)
T ss_pred CceEEEEEEEeecCc--EEEecCCceEEEEcccCc---------------chhhhhhhhhcceeEEEEcCCCCeEE----
Confidence 334578888888874 679999999999999886 45667788999999999999999999
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
++|.|+.|..|.......+ .........|...|.+++.
T Consensus 262 ----saGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 262 ----SAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred ----EccCCCceEEEEecCCccc--eeeeccccCCcccceeeee
Confidence 8899999999988742110 1122334567777777664
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=189.96 Aligned_cols=279 Identities=19% Similarity=0.285 Sum_probs=203.3
Q ss_pred EEEecC--CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547 36 RIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 113 (387)
Q Consensus 36 ~i~~~~--~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v 113 (387)
+..|++ ....+||.+..||.|.++|.....-.. +...+.....|.. +|..+.|.|....|++++.|.++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~------ee~~lk~~~aH~n-AifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL------EERQLKKPLAHKN-AIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcch------hhhhhcccccccc-eeEeeccCCCceeEEEccCCceeee
Confidence 355554 456789999999999999987653221 1133456677887 7999999996678999999999999
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 193 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 193 (387)
||+++..... ...+.+|...|.+++|.|.++..|++|+.||.
T Consensus 127 Wdvk~s~l~G--------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 127 WDVKTSRLVG--------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred eeeccceeec--------------------------------------ceeecccccccchhhhccCCCcceeeccCCCc
Confidence 9998654321 13467999999999999999899999999999
Q ss_pred EEEEEccCCCCc-------------------------eeEEeeccCCCeeE---EEecCCCCCeEEEeeC-CCeEEEEEe
Q 016547 194 LILWDARVGTSP-------------------------VIKVEKAHDADLHC---VDWNPLDDNLILTGSA-DNSVRMFDR 244 (387)
Q Consensus 194 i~iwd~~~~~~~-------------------------~~~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~~~d~ 244 (387)
|.|||++..... .+.....+...|.+ +-+.. |...||+++. |+.|++||+
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDL 247 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEee
Confidence 999998753210 01112233333444 44444 7889999888 999999999
Q ss_pred ccCCCCCCCCceEEe--ccc---cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 245 RNLTSNGVGSPINKF--EGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
+........++.... ..| .-.+.++.....|.+|+|+|. |+.|++|++...... .+..+.+
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~s-------------P~~~~sg 313 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSIS-------------PVAEFSG 313 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcC-------------chhhccC
Confidence 986443323333322 233 346788888888999998887 999999999986442 2333333
Q ss_pred CCC--CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 320 HRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 320 ~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.. .-..-..+|++.+++ +|+.|...++|.++. -......+.+|.-.|++|+|.|
T Consensus 314 ~~~~sf~vks~lSpd~~~l~--------SgSsd~~ayiw~vs~-----~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPDDCSLL--------SGSSDEQAYIWVVSS-----PEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cccceeeeeeecCCCCceEe--------ccCCCcceeeeeecC-----ccCChhhhhCcceEEEEEeecc
Confidence 322 112334689999998 999999999999996 3566788899999999999986
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-26 Score=187.35 Aligned_cols=265 Identities=18% Similarity=0.263 Sum_probs=204.5
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 113 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v 113 (387)
+..+.|...+.-.+|+.+.|..|++|.-..... ....+..+.+... .|++......|+++|+..+.|+|
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~--------~Vp~~~k~~gd~~---~Cv~~~s~S~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP--------EVPRVRKLTGDNA---FCVACASQSLYEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCC--------ccceeeccccchH---HHHhhhhcceeeeccCcCceeee
Confidence 899999884333344556688899997554410 1122233344332 45555555689999999999999
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 193 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 193 (387)
||++... ..+.+++|+..|+++.+.-.+ .++++++..|.
T Consensus 106 wdl~~kl----------------------------------------~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGd 144 (673)
T KOG4378|consen 106 WDLRAKL----------------------------------------IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGD 144 (673)
T ss_pred hhhHHHH----------------------------------------HhhhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence 9998432 225678999999999999887 79999999999
Q ss_pred EEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEEEE
Q 016547 194 LILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQW 271 (387)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~ 271 (387)
|.+..+.++.. ...+.. ....|+-+.|+|....+|.+++.+|.|.+||... ..++. -.+.|..+...|+|
T Consensus 145 iiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g------~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 145 IIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG------MSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC------CCcccchhhhccCCcCccee
Confidence 99999998873 333332 2456778999997777888999999999999997 44444 45689999999999
Q ss_pred cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547 272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 351 (387)
Q Consensus 272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg 351 (387)
+|.++.||++.+.|.+|.+||++.... ... ..-..+.+.++|+++|-+|+ .|...|
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s---------------~~~-l~y~~Plstvaf~~~G~~L~--------aG~s~G 272 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQAS---------------TDR-LTYSHPLSTVAFSECGTYLC--------AGNSKG 272 (673)
T ss_pred cCCccceEEEecccceEEEeecccccc---------------cce-eeecCCcceeeecCCceEEE--------eecCCc
Confidence 999999999999999999999986321 111 12345889999999999888 677779
Q ss_pred eEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 352 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 352 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.|..||++. ...++.++..|...|++++|.|
T Consensus 273 ~~i~YD~R~-----~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 273 ELIAYDMRS-----TKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred eEEEEeccc-----CCCCceEeeecccceeEEEeee
Confidence 999999996 5788999999999999999976
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=5.3e-26 Score=190.05 Aligned_cols=282 Identities=21% Similarity=0.344 Sum_probs=191.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE--EEeccCCCceEEEEECCCCC-E
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQDNAEFALAMCPTEP-Y 101 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~h~~~~v~~~~~~~~~~-~ 101 (387)
.....|.+.|..+.|.| ....|++++.|.++++||+.+. +... .+.||.. .|.+++|.|... .
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s------------~l~G~~~~~GH~~-SvkS~cf~~~n~~v 159 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS------------RLVGGRLNLGHTG-SVKSECFMPTNPAV 159 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc------------eeecceeeccccc-ccchhhhccCCCcc
Confidence 34457999999999999 8889999999999999999988 3333 4889998 589999999655 6
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE---EEEc
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED---VTFC 178 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~ 178 (387)
+++|+.||.|.|||++-............. .+ ...+. .....+..+.+.....+...|.+ +.+.
T Consensus 160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~-~~-----------~~n~~-ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 160 FCTGGRDGEILLWDCRCNGVDALEEFDNRI-YG-----------RHNTA-PTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred eeeccCCCcEEEEEEeccchhhHHHHhhhh-hc-----------cccCC-CCCCchhhccccccccccCceeeeeEEEEE
Confidence 889999999999999754210000000000 00 00000 00000111112223344444444 4455
Q ss_pred cCCCeeEEEecC-CCeEEEEEccCCCCc------eeEEeecc---CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 179 PSSAQEFCSVGD-DSCLILWDARVGTSP------VIKVEKAH---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 179 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~------~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
.|. ..|++++. |+.|++||++..... ....+..| .-.+.++..+. .|.+|.+.+.|+.|++|++....
T Consensus 227 kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 227 KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccC
Confidence 565 67888877 999999999976421 11122223 23567888887 77888888889999999999754
Q ss_pred CCCCCCceEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 249 SNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
..++..+.++.. .-..-..+|++.++ ++|+.|....+|.+.....+ ...+.+|...|+.
T Consensus 305 ----~sP~~~~sg~~~~sf~vks~lSpd~~~l-~SgSsd~~ayiw~vs~~e~~--------------~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 305 ----ISPVAEFSGKLNSSFYVKSELSPDDCSL-LSGSSDEQAYIWVVSSPEAP--------------PALLLGHTREVTT 365 (720)
T ss_pred ----cCchhhccCcccceeeeeeecCCCCceE-eccCCCcceeeeeecCccCC--------------hhhhhCcceEEEE
Confidence 345555554322 12233468999975 69999999999999986443 4456899999999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
++|.|..-.-+++|++| .+++||++.+-
T Consensus 366 V~w~pS~~t~v~TcSdD-------~~~kiW~l~~~ 393 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDD-------FRVKIWRLSNG 393 (720)
T ss_pred EeeccccCCCceeeccC-------cceEEEeccCc
Confidence 99999776666766555 99999999743
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-27 Score=210.05 Aligned_cols=278 Identities=20% Similarity=0.368 Sum_probs=210.4
Q ss_pred EEEEecCCCCcEEEEecC----------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE---
Q 016547 35 NRIRELPQNTKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--- 101 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~--- 101 (387)
..++|+|....++|+|.. +.++-||.++...... .-++...+.... ..+.++|.+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~------dlk~~~s~~s~~--rF~kL~W~~~g~~~~G 81 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS------DLKPVGSLQSSN--RFNKLAWGSYGSHSHG 81 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc------cccccccccccc--cceeeeecccCCCccc
Confidence 346788855447777643 4455666554431110 012333333333 4689999998776
Q ss_pred -EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 102 -VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 102 -l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
|+.|..||.|.+||..... .......+..+..|.+.|..+.|++.
T Consensus 82 lIaGG~edG~I~ly~p~~~~----------------------------------~~~~~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASII----------------------------------ANASEEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred eeeccccCCceEEecchhhc----------------------------------cCcchHHHhhhcccCCceeeeecccc
Confidence 8888999999999987521 11223445677889999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
.++++++|+.||.|.|||+...+.+.........+.|.+++|+......|++++.+|.+.|||+|. .+++..+.
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------~~pii~ls 201 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------KKPIIKLS 201 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------CCcccccc
Confidence 988999999999999999998765433333345678999999987788999999999999999998 77777776
Q ss_pred cccc--eEEEEEEcCCCCeeEEEecCCC---eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 261 GHSA--AVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 261 ~~~~--~i~~~~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
.+.. .+..++|+|++..-++++++|. .|.+||+|....+ +..+.+|...|.+|.|++.+..
T Consensus 202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP--------------~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP--------------LKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc--------------hhhhcccccceeeeccCCCCch
Confidence 5554 4789999999865555666543 5999999975433 4556899999999999999977
Q ss_pred EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++ |+|.|+.|.+|+.+ +++.+.++....+.+..+.|.|
T Consensus 268 lll-------SsgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 268 LLL-------SSGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred hhh-------cccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence 776 66666999999999 8999999999889999999987
No 138
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-24 Score=159.07 Aligned_cols=240 Identities=15% Similarity=0.226 Sum_probs=171.4
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.|.+++|+|.|.+.++|+..+++++-....-......... . ..+.......-+.|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea-----~--------------------~~pp~v~~kr~khh 88 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA-----A--------------------KQPPSVLCKRNKHH 88 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCccccccc-----c--------------------cCCCeEEeeecccc
Confidence 6899999999999999999999988765432111110000 0 00000111334678
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce---eEEeeccCCCeeEEEe-----------------------
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV---IKVEKAHDADLHCVDW----------------------- 222 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~----------------------- 222 (387)
.+.|.|.+|+|.| .++++|++|.+|++.-+....... ...+.-|.+.|..++|
T Consensus 89 kgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 89 KGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred CccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 9999999999999 899999999999987654332100 1122223333333333
Q ss_pred -----------------------cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--c-----cceEEEEEEc
Q 016547 223 -----------------------NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H-----SAAVLCVQWS 272 (387)
Q Consensus 223 -----------------------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~-----~~~i~~~~~~ 272 (387)
+- ++-++++|+.|.+|++||++- ..++..+.. | .+.|.+++..
T Consensus 168 tdc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv------~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRV------NSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeec------cceeeeccCcccCCCcccceeEEEEEC
Confidence 22 567899999999999999998 666666532 2 3679999999
Q ss_pred CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547 273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 352 (387)
Q Consensus 273 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~ 352 (387)
|.|+ ||++|-.|....+||++.. ..+..+..|...|.++.|+|...|++ ||+.|..
T Consensus 241 psgr-ll~sg~~dssc~lydirg~---------------r~iq~f~phsadir~vrfsp~a~yll--------t~syd~~ 296 (350)
T KOG0641|consen 241 PSGR-LLASGHADSSCMLYDIRGG---------------RMIQRFHPHSADIRCVRFSPGAHYLL--------TCSYDMK 296 (350)
T ss_pred CCcc-eeeeccCCCceEEEEeeCC---------------ceeeeeCCCccceeEEEeCCCceEEE--------Eecccce
Confidence 9999 6889999999999999985 45777889999999999999877777 7777899
Q ss_pred EEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 353 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 353 i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|++=|+..... ..-++.....|++.+..+.|+|
T Consensus 297 ikltdlqgdla--~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 297 IKLTDLQGDLA--HELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred EEEeecccchh--hcCceEEEEeccCceEEEEecC
Confidence 99999983211 0112334567999999998887
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=178.73 Aligned_cols=214 Identities=20% Similarity=0.373 Sum_probs=166.5
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
|+|+|.|..|..|.|||+.-.......-. .+ ...........+.-..-.+|+..|..+.|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~-----LG--------------s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVT-----LG--------------SKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cceEEEeccCceeEEecccccccccccee-----ec--------------hhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 67999999999999999863211110000 00 000000000011112234789999999999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
..-.+.|++|+.|.+|++||+.+++ +...+..|...|.++.|+|..+..|++|+.|++|.+.|.|.. ...-..
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-----~~s~~~ 325 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-----SNSGKE 325 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-----cccCce
Confidence 8887899999999999999999999 667777899999999999989999999999999999999963 222233
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
++ ..+.|-.++|.|.....+.++..||+++-+|+|..++ ++.++..|.++|.++++++..+.+++
T Consensus 326 wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--------------~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 326 WK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--------------PVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred EE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC--------------ceeEEEeccCCcceEEecCCCCccee
Confidence 33 4678999999999988888999999999999998654 47888999999999999999998887
Q ss_pred EecCCCCCCCCCceEEEEecCC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
|++.|+.|++|++..
T Consensus 391 -------t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 391 -------TASTDKVVKLWKFDV 405 (463)
T ss_pred -------eccccceEEEEeecC
Confidence 666779999999984
No 140
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.8e-25 Score=168.87 Aligned_cols=239 Identities=13% Similarity=0.183 Sum_probs=183.6
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC--EE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YV 102 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~--~l 102 (387)
.....|.++|.+++|+. ++..+++|+.|+++++||+.++ ....+..|.. +|.++.|-+... .|
T Consensus 66 ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~-------------Q~~~v~~Hd~-pvkt~~wv~~~~~~cl 130 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG-------------QVSQVAAHDA-PVKTCHWVPGMNYQCL 130 (347)
T ss_pred hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC-------------Ceeeeeeccc-ceeEEEEecCCCccee
Confidence 34457999999999999 8899999999999999999998 3556778887 799999987665 79
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
+|||.|++|++||++...... .+. -.+.+.++..-.
T Consensus 131 ~TGSWDKTlKfWD~R~~~pv~----------------------------------------t~~-LPeRvYa~Dv~~--- 166 (347)
T KOG0647|consen 131 VTGSWDKTLKFWDTRSSNPVA----------------------------------------TLQ-LPERVYAADVLY--- 166 (347)
T ss_pred EecccccceeecccCCCCeee----------------------------------------eee-ccceeeehhccC---
Confidence 999999999999998543221 111 134566666532
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.+++++..+..|.+|+++.+..........-.-.++|++..+ +....+.|+.+|.+-+..+.... .+.-..|+-|
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~----~~~nFtFkCH 241 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPN----PKDNFTFKCH 241 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCC----ccCceeEEEe
Confidence 467888889999999998765322222333445688999988 78888999999999999888731 1333344444
Q ss_pred c---------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547 263 S---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 333 (387)
Q Consensus 263 ~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (387)
. ..|++|+|+|.... |++.+.||+..+||-.... .+.....|..+|++.+|+.+|
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgt-lvTaGsDGtf~FWDkdar~---------------kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGT-LVTAGSDGTFSFWDKDART---------------KLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred ccCCCCCCceEEecceEeecccce-EEEecCCceEEEecchhhh---------------hhhccCcCCCccceeEecCCC
Confidence 3 35889999998774 6799999999999987642 244556788999999999999
Q ss_pred CeEEEEecCC
Q 016547 334 PWTVVSVSDD 343 (387)
Q Consensus 334 ~~l~~s~s~d 343 (387)
.+++.+.+.|
T Consensus 306 ~ifaYA~gYD 315 (347)
T KOG0647|consen 306 SIFAYALGYD 315 (347)
T ss_pred CEEEEEeecc
Confidence 9999888877
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-25 Score=169.32 Aligned_cols=253 Identities=18% Similarity=0.301 Sum_probs=190.3
Q ss_pred EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccC
Q 016547 47 VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126 (387)
Q Consensus 47 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 126 (387)
+++|+....|.=+++.-.+....-.......++..+..|.+ .|++++. ++.++++|+.|-+|+|||+.+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~-sitavAV--s~~~~aSGssDetI~IYDm~k~~q----- 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAG-SITALAV--SGPYVASGSSDETIHIYDMRKRKQ----- 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecccccccccc-ceeEEEe--cceeEeccCCCCcEEEEeccchhh-----
Confidence 56777776666666554431111111111245777889998 6999999 689999999999999999986433
Q ss_pred CCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-CeeEEEecCCCeEEEEEccCCCCc
Q 016547 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSP 205 (387)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 205 (387)
+..+-.|.+.|+++.|.+.. ...|++|+.||.|.+|+....+
T Consensus 76 -----------------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-- 118 (362)
T KOG0294|consen 76 -----------------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-- 118 (362)
T ss_pred -----------------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--
Confidence 35667899999999998864 1379999999999999998876
Q ss_pred eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285 (387)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d 285 (387)
++..+.+|.+.|+.++++| .+.+-++.+.|+.+++||+-. ++.-..+.- ....+.+.|+|.|.++ +.++ -
T Consensus 119 ~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~------Gr~a~v~~L-~~~at~v~w~~~Gd~F-~v~~-~ 188 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR------GRVAFVLNL-KNKATLVSWSPQGDHF-VVSG-R 188 (362)
T ss_pred EeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhc------Cccceeecc-CCcceeeEEcCCCCEE-EEEe-c
Confidence 7899999999999999999 999999999999999999987 444333331 2223449999999974 4554 4
Q ss_pred CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccc
Q 016547 286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP 365 (387)
Q Consensus 286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~ 365 (387)
..|-+|.+...... ........+.++.|-. +..|+ +|+.|+.|++||.+
T Consensus 189 ~~i~i~q~d~A~v~----------------~~i~~~~r~l~~~~l~-~~~L~--------vG~d~~~i~~~D~d------ 237 (362)
T KOG0294|consen 189 NKIDIYQLDNASVF----------------REIENPKRILCATFLD-GSELL--------VGGDNEWISLKDTD------ 237 (362)
T ss_pred cEEEEEecccHhHh----------------hhhhccccceeeeecC-CceEE--------EecCCceEEEeccC------
Confidence 56999999874221 1112224566777764 56677 88888999999999
Q ss_pred cchhhhhhhccCceEEEeee
Q 016547 366 QDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 366 ~~~~~~~~~~~~~~v~~~~f 385 (387)
+..++.++.+|...|-++.+
T Consensus 238 s~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred CCccceeeecchhheeeeEE
Confidence 68899999999999988764
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=189.74 Aligned_cols=246 Identities=17% Similarity=0.323 Sum_probs=205.3
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC---CCCEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLS 104 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~---~~~~l~s 104 (387)
.+-.-.+++++.+| ++++||+|..-|.++||++... .....+..|.. .|.|+.|+. ..++|++
T Consensus 456 ~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eAHes-EilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQEL------------EYTCFMEAHES-EILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cCcccceEEEEECC-CcceecccCccCceEEEEehhh------------hhhhheecccc-eeEEEeecCchhhhHhhhh
Confidence 34556799999999 9999999999999999999988 67778899998 799999986 3568999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Ce
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQ 183 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 183 (387)
++.|+-|.|+|+.. ...+++++.+|...|+++.|...| ..
T Consensus 522 asrdRlIHV~Dv~r---------------------------------------ny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKR---------------------------------------NYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred ccCCceEEEEeccc---------------------------------------ccchhhhhcccccceeEEEEeecCCce
Confidence 99999999999973 344567889999999999998765 35
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEee-----ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
.+++++.|..|.+--.+.... ...+. .....++.|++.| ...++++++.|..|+|||+.+ ++..+.
T Consensus 563 ~MiscGADksimFr~~qk~~~--g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~s------gKq~k~ 633 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASS--GRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIES------GKQVKS 633 (1080)
T ss_pred EEEeccCchhhheehhccccC--ceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccc------cceeee
Confidence 688999998876644332211 11121 1235688999999 999999999999999999999 888888
Q ss_pred ecc---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 259 FEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 259 ~~~---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
|++ |++....+...|.|-| +|+.+.|.++.++|+..+ +++.+..||...|+.+.|.+|-+.
T Consensus 634 FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sg---------------EcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSG---------------ECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred ecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccc---------------hhhhhhcCcchheeeeeecccchh
Confidence 864 6677889999999997 568888999999999986 567888999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
|+ +.+.||.|.||.+.
T Consensus 698 lI--------SvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 698 LI--------SVSGDGCIFVWKLP 713 (1080)
T ss_pred he--------eecCCceEEEEECc
Confidence 98 77778999999987
No 143
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=6.7e-25 Score=166.69 Aligned_cols=253 Identities=21% Similarity=0.365 Sum_probs=190.3
Q ss_pred eecCCCcEEEEEecCCC----CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE----eccCCCceEEEEECC-
Q 016547 27 TIIHPGEVNRIRELPQN----TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCP- 97 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~~~- 97 (387)
.+.|.-+++.+.|.|+. .++|||.+. .+++|.+...+.... +...+ ..+-..++++..|+.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~--------~~~~L~~~kns~~~aPlTSFDWne~ 161 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVE--------LQSVLNNNKNSEFCAPLTSFDWNEV 161 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCcee--------hhhhhccCcccccCCcccccccccC
Confidence 37899999999999943 367888653 799999986432211 11111 222234789999987
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
+.+++.++|-|-+..|||++++.. +.....+-.|..+|..++|
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~-------------------------------------~~vkTQLIAHDKEV~DIaf 204 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVS-------------------------------------GTVKTQLIAHDKEVYDIAF 204 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccc-------------------------------------cceeeEEEecCcceeEEEe
Confidence 677899999999999999987511 1122556789999999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-CCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCc
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~ 255 (387)
...+.+.|++.+.||.++++|++..+...+...... ..+...++|++.+.+++|+-..| ..|.+.|+|.+ ..+
T Consensus 205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----~tp 279 (364)
T KOG0290|consen 205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----CTP 279 (364)
T ss_pred ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----Ccc
Confidence 998888999999999999999998774333222222 56888999999899999987776 57999999986 789
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
+..+++|.+.|+.++|.|.....++++++|..+.+||+........ ..+ +.... -.+.|+.+.|++..+-
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-------~dP--ilay~-a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-------EDP--ILAYT-AGGEVNQIQWSSSQPD 349 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-------CCc--hhhhh-ccceeeeeeecccCCC
Confidence 9999999999999999998887889999999999999987543111 111 11122 4568999999976655
Q ss_pred EEEEec
Q 016547 336 TVVSVS 341 (387)
Q Consensus 336 l~~s~s 341 (387)
-++.|.
T Consensus 350 wiai~~ 355 (364)
T KOG0290|consen 350 WIAICF 355 (364)
T ss_pred EEEEEe
Confidence 554443
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.3e-25 Score=182.94 Aligned_cols=240 Identities=19% Similarity=0.362 Sum_probs=196.3
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-..-|+++..+| +++-|++|+.-.++.|||+..... +....+..-.- ...+++.+||.+...+|..||
T Consensus 464 rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTp----------rikaeltssap-aCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 464 RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTP----------RIKAELTSSAP-ACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred cccceeeeEecC-CCceEEeccccceeeeeeccCCCc----------chhhhcCCcch-hhhhhhcCCccceeeeeccCC
Confidence 345688888899 899999999999999999987721 12222222222 457899999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.|||+.+... +..+.+|++.+.||..+++| ..|-+|+
T Consensus 532 nI~vwDLhnq~~----------------------------------------VrqfqGhtDGascIdis~dG-tklWTGG 570 (705)
T KOG0639|consen 532 NIAVWDLHNQTL----------------------------------------VRQFQGHTDGASCIDISKDG-TKLWTGG 570 (705)
T ss_pred cEEEEEccccee----------------------------------------eecccCCCCCceeEEecCCC-ceeecCC
Confidence 999999986433 37789999999999999999 8899999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 269 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (387)
-|++|+.||++++.+... ....+.|.++.++| .+.++++|-.++.+-+.... +.....+..|++.|.++
T Consensus 571 lDntvRcWDlregrqlqq---hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~s-------kp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTS-------KPEKYQLHLHESCVLSL 639 (705)
T ss_pred Cccceeehhhhhhhhhhh---hhhhhhheecccCC-CccceeeecccCcEEEEecC-------CccceeecccccEEEEE
Confidence 999999999999884322 23457899999999 99999999999999888776 45566777799999999
Q ss_pred EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547 270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 349 (387)
Q Consensus 270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~ 349 (387)
.|.+.|++ |++.+.|..+..|.+.-+.. ++.. .-.+.|.++..+.|+++++ ||+.
T Consensus 640 KFa~cGkw-fvStGkDnlLnawrtPyGas---------------iFqs-kE~SsVlsCDIS~ddkyIV--------TGSG 694 (705)
T KOG0639|consen 640 KFAYCGKW-FVSTGKDNLLNAWRTPYGAS---------------IFQS-KESSSVLSCDISFDDKYIV--------TGSG 694 (705)
T ss_pred EecccCce-eeecCchhhhhhccCccccc---------------eeec-cccCcceeeeeccCceEEE--------ecCC
Confidence 99999996 67999999999999887532 3332 2356899999999999888 8888
Q ss_pred CceEEEEec
Q 016547 350 GGTLQIWRM 358 (387)
Q Consensus 350 dg~i~iw~~ 358 (387)
|....||.+
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 898888875
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.9e-23 Score=170.35 Aligned_cols=270 Identities=21% Similarity=0.354 Sum_probs=194.9
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
+.-|.|++|.+ +++ ++||.++|.|.||+..+. +.......|.+ .|.+++...+|..|- |+.|+.
T Consensus 246 kk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~------------~~~k~~~aH~g-gv~~L~~lr~GtllS-GgKDRk 309 (626)
T KOG2106|consen 246 KKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN------------RISKQVHAHDG-GVFSLCMLRDGTLLS-GGKDRK 309 (626)
T ss_pred ceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc------------eEEeEeeecCC-ceEEEEEecCccEee-cCccce
Confidence 47799999999 665 779999999999999777 55555558988 589999999997555 999999
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCC------CCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGD------GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|..|| .+.+...... .+...+.+.....+..+ .+..+....+........+|.+....++.+|+. .+
T Consensus 310 i~~Wd-~~y~k~r~~e-----lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q 382 (626)
T KOG2106|consen 310 IILWD-DNYRKLRETE-----LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQ 382 (626)
T ss_pred EEecc-cccccccccc-----CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hh
Confidence 99999 2221111111 11111111111111111 011111112223345567899999999999998 78
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++++.|+.+++|+ ..+ .........+..|+.|+| .+ .++.|+..|...+.|.++ ...+..-. ...
T Consensus 383 ~~T~gqdk~v~lW~--~~k---~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~------~~lv~~~~-d~~ 448 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHK---LEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET------QDLVTIHT-DNE 448 (626)
T ss_pred eeeccCcceEEEcc--CCc---eeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEeccc------ceeEEEEe-cCC
Confidence 99999999999999 222 222233567889999999 77 999999999999999997 44444444 488
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
++++++|+|+|.+ ||.|+.|+.|+||-+...+..+. ..-..+..+|+.+.|++|++++.
T Consensus 449 ~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~-------------r~~k~~gs~ithLDwS~Ds~~~~------- 507 (626)
T KOG2106|consen 449 QLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYS-------------RVGKCSGSPITHLDWSSDSQFLV------- 507 (626)
T ss_pred ceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEE-------------EeeeecCceeEEeeecCCCceEE-------
Confidence 9999999999995 78999999999999998655432 22233448999999999999988
Q ss_pred CCCCCCceEEEEecC
Q 016547 345 DSTGGGGTLQIWRMS 359 (387)
Q Consensus 345 ~tg~~dg~i~iw~~~ 359 (387)
+-+.|-.|..|...
T Consensus 508 -~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 508 -SNSGDYEILYWKPS 521 (626)
T ss_pred -eccCceEEEEEccc
Confidence 77777899999443
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=9.1e-24 Score=177.63 Aligned_cols=253 Identities=11% Similarity=0.131 Sum_probs=176.7
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~ 122 (387)
++++++++.|+.|++||+.++ +....+..+.. +.+++|+|+++.+ ++++.++.|++||+.++...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~------------~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL------------EVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC------------ceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 357889999999999999887 56667776654 5689999999976 56778899999998754321
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 202 (387)
..+..+. .+..+.|+|++..++++++.++.+++||+++.
T Consensus 67 ----------------------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~ 105 (300)
T TIGR03866 67 ----------------------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR 105 (300)
T ss_pred ----------------------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 1122222 24578899998545566677899999999876
Q ss_pred CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s 281 (387)
+ .+..+. +...+.+++|+| ++.++++++.++ .+.+||.++ .+.+..+. ....+.+++|+|+++.++++
T Consensus 106 ~--~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 106 K--VLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred e--EEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEE
Confidence 5 344443 334578899999 999999988775 567789876 55544443 23345789999999987667
Q ss_pred ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-ccC--CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
+..++.|++||+.+....... .... ..+ ......++|+|++++++++.+ .++.|.+||+
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-------~~~~i~v~d~ 236 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKI-----------TFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-------PANRVAVVDA 236 (300)
T ss_pred cCCCCEEEEEEcCcceeeeee-----------eecccccccccCCccceEECCCCCEEEEEcC-------CCCeEEEEEC
Confidence 777999999999875321110 0000 001 113457889999998776433 3478999999
Q ss_pred CCCcccccchhhhhhhccCceEEEeeecC
Q 016547 359 SDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
. +++.+..+. +...+.+++|+|
T Consensus 237 ~------~~~~~~~~~-~~~~~~~~~~~~ 258 (300)
T TIGR03866 237 K------TYEVLDYLL-VGQRVWQLAFTP 258 (300)
T ss_pred C------CCcEEEEEE-eCCCcceEEECC
Confidence 8 555554442 445788888887
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=179.38 Aligned_cols=266 Identities=18% Similarity=0.272 Sum_probs=169.6
Q ss_pred CeEEEeccCCCceEEEEECCCC-CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
.+..+.+|.+ .|.|++=+|.. ..+++|+.||.|++||+.+..+...+........+-............+..+..|..
T Consensus 58 Fv~~L~gHrd-GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 58 FVGSLDGHRD-GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred chhhcccccc-ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4567899998 58999999977 689999999999999998765543333222111110000000000111111222221
Q ss_pred CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
.. .+..++.+ ...+..+.-+..+ ..++|++. .|.|||..... .+..+.-....|.++.|+|.....|++|..|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDN--PVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred cC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCC--ccceeecCCCceeEEecCCCcchheeeeccC
Confidence 11 12222222 1223333333333 34444443 25555554433 3344444556788999999777888999999
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 316 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 316 (387)
+.|.|||++. ..++..+. ....-+.|+|+|.. +.|+++++|..++.||++....+ +..
T Consensus 210 rsIvLyD~R~------~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p--------------~~v 267 (433)
T KOG0268|consen 210 RSIVLYDLRQ------ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP--------------LNV 267 (433)
T ss_pred CceEEEeccc------CCccceee-eeccccceecCccc-cceeeccccccceehhhhhhccc--------------chh
Confidence 9999999999 77776654 23455789999944 56889999999999999987554 556
Q ss_pred eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
+.+|.+.|.+++|+|.|+-++ +||.|.+|+||.++... +.+... ...-..|.+|.||
T Consensus 268 ~~dhvsAV~dVdfsptG~Efv--------sgsyDksIRIf~~~~~~---SRdiYh--tkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPTGQEFV--------SGSYDKSIRIFPVNHGH---SRDIYH--TKRMQHVFCVKYS 324 (433)
T ss_pred hcccceeEEEeccCCCcchhc--------cccccceEEEeecCCCc---chhhhh--HhhhheeeEEEEe
Confidence 688999999999999999988 89999999999999421 111111 1123457777765
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.2e-24 Score=164.28 Aligned_cols=249 Identities=15% Similarity=0.288 Sum_probs=185.4
Q ss_pred EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
-.+|.+ .|.++.|.+.|+++++|+.|++|+|||.++. ..++..
T Consensus 9 ~s~h~D-lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~------------------------------------s~~W~~ 51 (361)
T KOG2445|consen 9 DSGHKD-LIHDVSFDFYGRRMATCSSDQTVKIWDSTSD------------------------------------SGTWSC 51 (361)
T ss_pred ccCCcc-eeeeeeecccCceeeeccCCCcEEEEeccCC------------------------------------CCceEE
Confidence 356776 7999999999999999999999999998542 234455
Q ss_pred ceeecCCCCCeEEEEEc-cCCCeeEEEecCCCeEEEEEccCC-------CCceeEEeeccCCCeeEEEecCC-CCCeEEE
Q 016547 162 RGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVG-------TSPVIKVEKAHDADLHCVDWNPL-DDNLILT 232 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~ 232 (387)
....+.|.+.|..+.|. |.-++.+++++.|+++.||.-... +......+....+.|+.++|.|. -|-.||+
T Consensus 52 Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 52 TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence 57788999999999995 454589999999999999975221 12234456667789999999993 3678999
Q ss_pred eeCCCeEEEEEeccCCCCCCCCceEEec-------cccceEEEEEEcCCC--CeeEEEecCC-----CeEEEEeCCCCCc
Q 016547 233 GSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDK--SSVFGSSAED-----GLLNIWDYEKVGK 298 (387)
Q Consensus 233 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--~~ll~s~~~d-----~~i~vwd~~~~~~ 298 (387)
++.||.+|||+.-.+.+-.......+++ .+..+..|+.|+|.. +.+||.|+.+ +.+.||.......
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 9999999999987654433355555555 456678899999752 2367788765 4799999877542
Q ss_pred eeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC---eEEEEecCCCCCCCCCceEEEEecCCCc--------ccc--
Q 016547 299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLI--------YRP-- 365 (387)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~s~s~d~~tg~~dg~i~iw~~~~~~--------~~~-- 365 (387)
. ...+..+.+|..+|++++|.|+-. +++| +++.|| |+||++.... ..+
T Consensus 212 K-----------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lA-------vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~ 272 (361)
T KOG2445|consen 212 K-----------WLKVAELPDHTDPIRDISWAPNIGRSYHLLA-------VATKDG-VRIFKVKVARSAIEEEEVLAPDL 272 (361)
T ss_pred e-----------eeeehhcCCCCCcceeeeeccccCCceeeEE-------EeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence 2 234667789999999999999742 4555 455558 9999998421 111
Q ss_pred ----cchhhhhhhccCceEEEeeec
Q 016547 366 ----QDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 366 ----~~~~~~~~~~~~~~v~~~~f~ 386 (387)
.-+.+.++..|.+.|+++.|.
T Consensus 273 ~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 273 MTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred ccccceEEeeeccCCCCceEEEEEe
Confidence 123456788999999999874
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.6e-24 Score=174.54 Aligned_cols=298 Identities=18% Similarity=0.330 Sum_probs=203.7
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccc----------------------------ccCCCCCCCe
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----------------------------VLGATNSRPD 79 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~----------------------------~~~~~~~~~~ 79 (387)
..|.+.|.++.... +|.+| +|+.|+.|..||-.-.+.... +.+..+....
T Consensus 284 ~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 38999999999887 77655 599999999999332221111 1111122334
Q ss_pred EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc-cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (387)
....+|.+ ....++.+|+...+++++.|+.+++|+-........ ..+.........+ ....+...+...+.+.++
T Consensus 362 ~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 362 LTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDTET 437 (626)
T ss_pred EEEEeccc-ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEeccc
Confidence 45677887 678999999999999999999999999222111111 1111111111111 222333444555555555
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 238 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 238 (387)
...+..-.. .+++++++|+|+| .+|+.|+.|+.|++|-+........+.-..+.++|+.+.|++ +++++.+-+.|-.
T Consensus 438 ~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 438 QDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYE 514 (626)
T ss_pred ceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceE
Confidence 444444444 8899999999999 899999999999999998766444444445669999999999 9999999999999
Q ss_pred EEEEEeccCCCCCCCCceEEe---------------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547 239 VRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 303 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 303 (387)
|..|....-.. ...++.+ ..+...|..++-+.+.. ++|+|.+.|+|++|...-..
T Consensus 515 iLyW~~~~~~~---~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~s------ 584 (626)
T KOG2106|consen 515 ILYWKPSECKQ---ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCSS------ 584 (626)
T ss_pred EEEEccccCcc---cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccCC------
Confidence 99994433110 1111111 12334455555555555 78999999999999887532
Q ss_pred CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
+......+.+|.+.|++++|.-+...++ +.+.|.+|..|++
T Consensus 585 ------~rA~~he~~ghs~~vt~V~Fl~~d~~li--------~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 585 ------PRAPSHEYGGHSSHVTNVAFLCKDSHLI--------STGKDTSIMQWRL 625 (626)
T ss_pred ------CcccceeeccccceeEEEEEeeCCceEE--------ecCCCceEEEEEe
Confidence 2234666789999999999999888777 5558899999986
No 150
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=1.7e-23 Score=159.17 Aligned_cols=299 Identities=16% Similarity=0.186 Sum_probs=210.9
Q ss_pred ceeeeeeecCCCcEEEEEecC--CCCcEEEEecC----CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE
Q 016547 21 FVKKHKTIIHPGEVNRIRELP--QNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA 94 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~--~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~ 94 (387)
..+....+.-.-++.++.|+. ..+.+||.|+- .+.|.|-.++.... ++ ..... ..|.- +++.+.
T Consensus 34 r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--e~------~~~a~-fd~~Y-P~tK~~ 103 (364)
T KOG0290|consen 34 RRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--EL------VEDAN-FDHPY-PVTKLM 103 (364)
T ss_pred ccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--ce------eccCC-CCCCC-CccceE
Confidence 444455556677889999983 45568888864 45677766653310 00 11111 34555 789999
Q ss_pred ECCCCC-----EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 95 MCPTEP-----YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 95 ~~~~~~-----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
|.|+.. .|||++ ..+|+|.+........... .-....-..+.
T Consensus 104 wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~-------------------------------~L~~~kns~~~ 150 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS-------------------------------VLNNNKNSEFC 150 (364)
T ss_pred ecCCccccCcchhhccc--CeEEEEeccCcCCceehhh-------------------------------hhccCcccccC
Confidence 999763 466654 4899999874211100000 00001123456
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
.+++++.|+.-.++++.+++-|-+..|||++++. ......+..|...|..++|.....+.||+.+.||.+|+||+|...
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 7899999999888999999999999999999873 224566779999999999998556899999999999999999843
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
. ...+.+-.....+...++|+++..+++|+-..| ..|.|.|++.+.. .+..+.+|.+.|+++
T Consensus 231 H---STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--------------pva~L~~H~a~VNgI 293 (364)
T KOG0290|consen 231 H---STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--------------PVARLRNHQASVNGI 293 (364)
T ss_pred c---ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--------------ceehhhcCcccccce
Confidence 2 233333333356788999999887777776654 5699999998643 477889999999999
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|.|.....++ |+|.|..+.+||+..........++.... -.+.|+.+.|+|
T Consensus 294 aWaPhS~~hic-------taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 294 AWAPHSSSHIC-------TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred EecCCCCceee-------ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence 99999887777 55555999999999765544445555555 567888888875
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.93 E-value=1.5e-23 Score=181.32 Aligned_cols=281 Identities=18% Similarity=0.259 Sum_probs=203.0
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC--E
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y 101 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~--~ 101 (387)
....+.-..+|+|++|+|.++.++|.|..+|+|.+||+........ .........|.. ++..+.|..+.. -
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------s~ls~~~~sh~~-~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------SGLSALEVSHSE-PVTAVVWLQNEHNTE 307 (555)
T ss_pred ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC------cccccccccCCc-CeEEEEEeccCCCCc
Confidence 3445567899999999999999999999999999999998743210 012223445666 788999976544 4
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++++.||.|..|+++.-......... ........-......+++++|.+..
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~----------------------------~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLL----------------------------ESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhccc----------------------------ccccccccccccccceeeEeeccCC
Confidence 999999999999988753221111000 0000000001223568999999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCce------eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec-cCCCCCCCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPV------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR-NLTSNGVGS 254 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~ 254 (387)
++.|+.|+.+|.|.--+-...+... ......|.++|+++.++|.....+++++ |.+++||... . ..
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~------~~ 432 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI------AS 432 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC------CC
Confidence 8999999999999874433222111 3345678899999999996556666665 9999999988 5 67
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
++..+..+...+++++|||...-+|+++..||.|.+||+..... ..+.+...+....+.+.|++.|+
T Consensus 433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGK 499 (555)
T ss_pred cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCc
Confidence 88888888888999999999999999999999999999987432 22333333456677888999898
Q ss_pred eEEEEecCCCCCCCCCceEEEEecCCCcccccc
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~ 367 (387)
.++ +|...|++++|++......+.+
T Consensus 500 ~la--------vGd~~G~~~~~~l~~~l~~~~~ 524 (555)
T KOG1587|consen 500 LLA--------VGDANGTTHILKLSESLAVPSP 524 (555)
T ss_pred EEE--------EecCCCcEEEEEcCchhhccCc
Confidence 777 7888899999999755444444
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=6.4e-24 Score=161.29 Aligned_cols=263 Identities=18% Similarity=0.326 Sum_probs=187.2
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecCC-------CeEEEEEcCCCcCccc
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKD-------KSVVLWSIQDHITSSA 124 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d-------~~i~vwd~~~~~~~~~ 124 (387)
|++|.+.+++..... -....+..|.+ .|..++-+|..+ .|+++..+ ..+.||.+.+.....
T Consensus 39 dNqVhll~~d~e~s~---------l~skvf~h~ag-Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S- 107 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSE---------LLSKVFFHHAG-EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS- 107 (370)
T ss_pred cceeEEEEecCccch---------hhhhhhhcCCc-ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-
Confidence 678888887765211 12233444554 799999999655 45555432 247899987543221
Q ss_pred cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547 125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 203 (387)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 203 (387)
...+.+.+..+. .+-+.|.|+.|.|++ ..+++-. |..|.+|++....
T Consensus 108 ------------------------------~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess 155 (370)
T KOG1007|consen 108 ------------------------------NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESS 155 (370)
T ss_pred ------------------------------ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCc
Confidence 111222333333 445689999999988 5566654 8899999998776
Q ss_pred CceeE----EeeccCCCeeEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEEcCCCCe
Q 016547 204 SPVIK----VEKAHDADLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSS 277 (387)
Q Consensus 204 ~~~~~----~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 277 (387)
..... ....+....++-+|+| .+++.+++ ..|+++..||+|+ .++...+ .+|...|..+.|+|+.++
T Consensus 156 ~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT------~~~~~sI~dAHgq~vrdlDfNpnkq~ 228 (370)
T KOG1007|consen 156 KIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRT------MKKNNSIEDAHGQRVRDLDFNPNKQH 228 (370)
T ss_pred chheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccc------hhhhcchhhhhcceeeeccCCCCceE
Confidence 31111 1123556778889999 46667666 4689999999998 4555554 478889999999999999
Q ss_pred eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547 278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 278 ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~ 357 (387)
+|++|++||.|+|||.++...+ +..+.+|..+|.++.|+|....|++ |||.|..|.+|.
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~p--------------v~el~~HsHWvW~VRfn~~hdqLiL-------s~~SDs~V~Lsc 287 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFP--------------VQELPGHSHWVWAVRFNPEHDQLIL-------SGGSDSAVNLSC 287 (370)
T ss_pred EEEEcCCCccEEEEeccCCCcc--------------ccccCCCceEEEEEEecCccceEEE-------ecCCCceeEEEe
Confidence 9999999999999999986543 6778999999999999999888887 666779999997
Q ss_pred cCCCc-----------------------ccccchhhhhhhccCceEEEeeec
Q 016547 358 MSDLI-----------------------YRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 358 ~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
..... ..-....++++..|.+.|++++||
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 65332 001223456788999999999997
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.8e-25 Score=181.45 Aligned_cols=279 Identities=15% Similarity=0.244 Sum_probs=203.6
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.+..|.+.|+.++|.| ....|++++.||++.+|+++..... .....+++.++++|.+ +|.|+++.+++..+++|
T Consensus 289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s----~~~~~epi~tfraH~g-PVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKS----AEKDVEPILTFRAHEG-PVLCVVVPSNGEHCYSG 362 (577)
T ss_pred eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCc----cccceeeeEEEecccC-ceEEEEecCCceEEEee
Confidence 6667999999999998 7778999999999999999543211 1223478999999998 89999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.||+|+.|++......... .........+.+|.+.|+.+++++.. ..|
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds------------------------------~dp~vl~~~l~Ghtdavw~l~~s~~~-~~L 411 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDS------------------------------YDPSVLSGTLLGHTDAVWLLALSSTK-DRL 411 (577)
T ss_pred ccCceeeeeccCCCCCcccc------------------------------cCcchhccceeccccceeeeeecccc-cce
Confidence 99999999988622111000 00112235678999999999999987 679
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc----
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---- 261 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---- 261 (387)
++++.||++++|+...... +........+...++.+-.......++...-+.-.++++.. ...+..+..
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev------~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV------VSDLLIFESSASP 484 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh------hhheeeccccCCC
Confidence 9999999999999876652 22222223344556666542223444433444444444444 333333321
Q ss_pred ---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 262 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 262 ---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
....+..+.++|.+.. ..++..|+.|+++|..++ .++.....|...++++++.|+|.+|+
T Consensus 485 ~~~~~~~in~vVs~~~~~~-~~~~hed~~Ir~~dn~~~---------------~~l~s~~a~~~svtslai~~ng~~l~- 547 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADI-TFTAHEDRSIRFFDNKTG---------------KILHSMVAHKDSVTSLAIDPNGPYLM- 547 (577)
T ss_pred cccccCccceEEecCCCCe-eEecccCCceeccccccc---------------ccchheeeccceecceeecCCCceEE-
Confidence 1234778899999885 559999999999999885 44666788999999999999999999
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 378 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 378 (387)
+|+.||.+++|.+. ...+..+...|..
T Consensus 548 -------s~s~d~sv~l~kld------~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 548 -------SGSHDGSVRLWKLD------VKTCVLESTAHRK 574 (577)
T ss_pred -------eecCCceeehhhcc------chheeeccccccc
Confidence 99999999999998 5666666666543
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-24 Score=166.29 Aligned_cols=220 Identities=18% Similarity=0.279 Sum_probs=164.8
Q ss_pred eEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547 79 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 79 ~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (387)
...+++|.+ .|++++|+.||++|++++.|++|++|++++......
T Consensus 79 ~~~LKgH~~-~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---------------------------------- 123 (420)
T KOG2096|consen 79 VSVLKGHKK-EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH---------------------------------- 123 (420)
T ss_pred hhhhhccCC-ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh----------------------------------
Confidence 346889998 799999999999999999999999999986322110
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC---ce-------eEEeeccCCCeeEEEecCCCCC
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---PV-------IKVEKAHDADLHCVDWNPLDDN 228 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~-------~~~~~~~~~~i~~~~~~~~~~~ 228 (387)
+.++. .-.-+..+.+.|.||-..+++++-....+++|-+...+. +. ......|.-.+..+-... ++.
T Consensus 124 -r~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k 200 (420)
T KOG2096|consen 124 -RCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAK 200 (420)
T ss_pred -hHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-Cce
Confidence 00010 011234678999999877778888888999998765331 10 112233555666677766 889
Q ss_pred eEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547 229 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 308 (387)
Q Consensus 229 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 308 (387)
++++++.|..|.+|+++ ++.+..+......-+..+.||+|++ +|+++.--.|++|.+--...-..
T Consensus 201 ~imsas~dt~i~lw~lk-------Gq~L~~idtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~f------- 265 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-------GQLLQSIDTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTF------- 265 (420)
T ss_pred EEEEecCCCcEEEEecC-------CceeeeeccccccccceeeCCCCcE-EEEecCCCCceEEEEEeccCcch-------
Confidence 99999999999999999 7888888877777788999999997 46777777899999754322111
Q ss_pred CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 309 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.....++.+.||...|+.++|+++...++ |.+.||+++|||.+
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~S~r~v--------tvSkDG~wriwdtd 308 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAV--------TVSKDGKWRIWDTD 308 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCCcceeE--------EEecCCcEEEeecc
Confidence 11134678899999999999999988876 66777999999987
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=173.83 Aligned_cols=220 Identities=19% Similarity=0.259 Sum_probs=176.8
Q ss_pred CeEEEeccCCCceEEEEECCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 155 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (387)
.....+.+.. .|++++|+|.. +.+++|+.-|.|-+||+.+..
T Consensus 178 ~~~v~kv~~~-Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----------------------------------- 221 (498)
T KOG4328|consen 178 ILNVAKVTDR-RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----------------------------------- 221 (498)
T ss_pred ecceeEeccc-ceEEEEecccCcceEEEEccCCCcEEEEecCCCC-----------------------------------
Confidence 4445666766 79999999964 478899999999999996321
Q ss_pred CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
+...-...+..|..+|.++.|+|.+...+++.+.||+|++-|++......+.........+..+.|+. +...++.+..
T Consensus 222 -~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~ 299 (498)
T KOG4328|consen 222 -KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDN 299 (498)
T ss_pred -CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeec
Confidence 11223366778999999999999988899999999999999999876444444444556677888888 7777777877
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
=|...+||+++. +.....+.-|...|.+++++|..+++||+++.|++.+|||++....... .+.
T Consensus 300 ~G~f~~iD~R~~-----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~l 363 (498)
T KOG4328|consen 300 VGNFNVIDLRTD-----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFL 363 (498)
T ss_pred ccceEEEEeecC-----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cce
Confidence 789999999985 4456667778889999999999999999999999999999998644321 144
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....|...|.+..|||.+..|+ |.+.|+.|+|||..
T Consensus 364 st~~HrrsV~sAyFSPs~gtl~--------TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPSGGTLL--------TTCQDNEIRVFDSS 399 (498)
T ss_pred ecccccceeeeeEEcCCCCceE--------eeccCCceEEeecc
Confidence 5567999999999999999977 77778999999984
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-24 Score=175.32 Aligned_cols=225 Identities=16% Similarity=0.268 Sum_probs=184.9
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 112 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~ 112 (387)
.-.|++... ...++++|+..+.|+|||++.. .+.+.+.+|.+ .|+++.++....|||+++..|.|.
T Consensus 81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~k------------l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRAK------------LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDII 146 (673)
T ss_pred hHHHHhhhh-cceeeeccCcCceeeehhhHHH------------HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEE
Confidence 345555555 4579999999999999999976 67778999996 799999999999999999999999
Q ss_pred EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547 113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 192 (387)
Q Consensus 113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 192 (387)
|..+.++.....+.. +....|.-+.|+|....+|.+++.+|
T Consensus 147 ih~~~t~~~tt~f~~---------------------------------------~sgqsvRll~ys~skr~lL~~asd~G 187 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTI---------------------------------------DSGQSVRLLRYSPSKRFLLSIASDKG 187 (673)
T ss_pred EEecccCccccceec---------------------------------------CCCCeEEEeecccccceeeEeeccCC
Confidence 999987644322111 11345678999999878888999999
Q ss_pred eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc
Q 016547 193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272 (387)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 272 (387)
.|.+||+.... +.......|..+...|+|+|.+..+|++.+.|..|.+||.+. .+....+. .+.+...++|.
T Consensus 188 ~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~ 259 (673)
T KOG4378|consen 188 AVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFS 259 (673)
T ss_pred eEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeec
Confidence 99999997655 456667789999999999998889999999999999999997 45544444 46788999999
Q ss_pred CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547 273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 333 (387)
Q Consensus 273 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (387)
++|.+ |+.|...|.|..||++....+ +..+..|...|++++|-|.-
T Consensus 260 ~~G~~-L~aG~s~G~~i~YD~R~~k~P--------------v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTY-LCAGNSKGELIAYDMRSTKAP--------------VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceE-EEeecCCceEEEEecccCCCC--------------ceEeeecccceeEEEeeecc
Confidence 99986 678999999999999986443 66678899999999998853
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=3.7e-24 Score=179.45 Aligned_cols=122 Identities=16% Similarity=0.413 Sum_probs=103.7
Q ss_pred CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC-CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547 216 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~ 294 (387)
.|+.+.|+|.+...|+++++||.|++|.+..... +....+...+.+|...|+++.|+|--..+|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 3667889998999999999999999999986432 122456677889999999999999776788999999999999999
Q ss_pred CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+. .....+.+|.+.|.+++|+|+|+.++ |.+.||+|++|+-+.
T Consensus 709 ~~---------------~~~~~l~gHtdqIf~~AWSpdGr~~A--------tVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NA---------------KLYSRLVGHTDQIFGIAWSPDGRRIA--------TVCKDGTLRVYEPRS 751 (1012)
T ss_pred hh---------------hhhheeccCcCceeEEEECCCCccee--------eeecCceEEEeCCCC
Confidence 86 33556789999999999999999877 777789999999874
No 158
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=174.20 Aligned_cols=312 Identities=14% Similarity=0.169 Sum_probs=225.9
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-E
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V 102 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l 102 (387)
..+..++.+.|+++.-+| --+.+|.|..+|+|.|++++.+ +.+..++...+ .|+++.|.-||.. |
T Consensus 195 v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~d------------kil~sFk~d~g-~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFD------------KILMSFKQDWG-RVTSLSFRTDGNPLL 260 (910)
T ss_pred EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccC------------cEEEEEEcccc-ceeEEEeccCCCeeE
Confidence 345556889999999888 7789999999999999999999 77777876644 7999999999985 5
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCC-----CceeccCCCCCCCCCCCCCCCCC--CCceeecCCCCCeEEE
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS-----GSIIKQSPKPGDGNDKAADGPSV--GPRGIYNGHEDTVEDV 175 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~ 175 (387)
++|+..|.+.+||+++.................. ..+...........+.+.+...+ +.++.-.+|..+..++
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 6777779999999998755444332221111110 11111111112222223333333 4455667899999999
Q ss_pred EEccCCCeeEEEecCCCeEEEEEccCCCC--------------------------ce-----------------------
Q 016547 176 TFCPSSAQEFCSVGDDSCLILWDARVGTS--------------------------PV----------------------- 206 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~----------------------- 206 (387)
.|......++.+++.|++++.+++..... +.
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 99855558899999998888776532100 00
Q ss_pred ---------------eEE-----eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe---cccc
Q 016547 207 ---------------IKV-----EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF---EGHS 263 (387)
Q Consensus 207 ---------------~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~ 263 (387)
... +......+++++.++ .|++.+.|+..|.|-+|++.+ +....++ ..|.
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS------Gi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS------GIHRKSFGDSPAHK 493 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc------CeeecccccCcccc
Confidence 000 011225678999999 999999999999999999998 7777777 5899
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
.+|++++...-++ ++++++.+|.+++||..+.. ++..+. -...++.+..+.....++
T Consensus 494 ~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~---------------l~~~l~-l~~~~~~iv~hr~s~l~a------ 550 (910)
T KOG1539|consen 494 GEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV---------------LKKSLR-LGSSITGIVYHRVSDLLA------ 550 (910)
T ss_pred CceeEEEecCCCc-eEEEccCcceEEEEecCCcc---------------eeeeec-cCCCcceeeeeehhhhhh------
Confidence 9999999988888 46799999999999998742 122221 234667777777666555
Q ss_pred CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+-.|-.|+++|+. +.+.++++.+|.+.|++++|||
T Consensus 551 --~~~ddf~I~vvD~~------t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 551 --IALDDFSIRVVDVV------TRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred --hhcCceeEEEEEch------hhhhhHHhhccccceeeeEeCC
Confidence 44555899999999 8999999999999999999998
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=163.35 Aligned_cols=251 Identities=18% Similarity=0.300 Sum_probs=184.1
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
..+|++.+.|+|++||..++ +.+..+++|+. .++.+.|.. ....+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccch------------hhhheecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 57899999999999999998 77888999987 688999977 4667899999999999999864332
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC-CCeEEEEEccCCCeeEEEec----CCCeEEEE
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVG----DDSCLILW 197 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~----~dg~i~iw 197 (387)
. ...+..+. .+..+++..-.+ +++++|. .+-.|.+|
T Consensus 108 a--------------------------------------~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 108 A--------------------------------------RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLW 148 (376)
T ss_pred h--------------------------------------heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEE
Confidence 1 12333443 456667766555 6677765 46779999
Q ss_pred EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC-C
Q 016547 198 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-S 276 (387)
Q Consensus 198 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 276 (387)
|++..+++.......|...|++++|+|.+.++|++||.||.|.+||+...... ...+..+. |...|.++.|..++ +
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee--DaL~~viN-~~sSI~~igw~~~~yk 225 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE--DALLHVIN-HGSSIHLIGWLSKKYK 225 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch--hhHHHhhc-ccceeeeeeeecCCcc
Confidence 99998865556677899999999999999999999999999999999864221 22333343 77889999999887 2
Q ss_pred eeEEEecCCCeEEEEeCCCCCceeccCCCCC----------------------------------------------CCC
Q 016547 277 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----------------------------------------------NYP 310 (387)
Q Consensus 277 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------------------------------------------~~~ 310 (387)
.+ .+-+..+...+|+++............. ...
T Consensus 226 rI-~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~ 304 (376)
T KOG1188|consen 226 RI-MCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL 304 (376)
T ss_pred eE-EEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccc
Confidence 24 4777889999999988664332221100 000
Q ss_pred ceeeeeecc-CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 311 AGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 311 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+....+.+ |..-|.++.|...+..++ |||.||.+.+|...
T Consensus 305 ~~~~a~l~g~~~eiVR~i~~~~~~~~l~--------TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 305 LTEPAILQGGHEEIVRDILFDVKNDVLY--------TGGEDGLLQAWKVE 346 (376)
T ss_pred cCccccccCCcHHHHHHHhhhcccceee--------ccCCCceEEEEecC
Confidence 011122333 555677777877777777 99999999999964
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=8.3e-23 Score=172.72 Aligned_cols=339 Identities=15% Similarity=0.204 Sum_probs=222.9
Q ss_pred eeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCc---EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE
Q 016547 4 WTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL 80 (387)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 80 (387)
|.+...+.-+++... .....+.||.++|+|+.|.| ..+ ++++|+.|+.|.+|.++.. ....+.
T Consensus 30 fGa~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~-~s~~~a~~vsG~sD~~v~lW~l~~~----------~~~~i~ 95 (764)
T KOG1063|consen 30 FGAGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLP-TSEIVAEMVSGDSDGRVILWKLRDE----------YLIKIY 95 (764)
T ss_pred ecCCceEEEeCcccc---eeEEeccCCccceEEEEEcc-cccccceEEEccCCCcEEEEEEeeh----------heEEEE
Confidence 334444444444332 34556678999999999998 555 8999999999999999843 225566
Q ss_pred EEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcC----ccccCCCc-----ccCCCCCCceeccCCCCCCCCC
Q 016547 81 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT----SSATDPAT-----AKSAGSSGSIIKQSPKPGDGND 151 (387)
Q Consensus 81 ~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 151 (387)
.+.+|.. .++++..........+.|+.+.+||.+.... ...+.... ..... .......+.+.....+
T Consensus 96 ~~~g~~~---~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 96 TIQGHCK---ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVV 171 (764)
T ss_pred eecCcce---eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEE
Confidence 7777664 4666654433333336899999999954431 01111100 00111 1222222223332222
Q ss_pred CCCC--CCCCCCceeecCCCCCeEEEEEccCC--CeeEEEecCCCeEEEEEccCCCC----------------c---ee-
Q 016547 152 KAAD--GPSVGPRGIYNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS----------------P---VI- 207 (387)
Q Consensus 152 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----------------~---~~- 207 (387)
.++. ..+......+.+|.+.|.+++|...+ ..+++++++|..|+||.+.-... + ..
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 2222 22556677889999999999998654 35889999999999998753320 0 01
Q ss_pred ---------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE---EeccccceEEEEEEcCCC
Q 016547 208 ---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN---KFEGHSAAVLCVQWSPDK 275 (387)
Q Consensus 208 ---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~ 275 (387)
..+.+|+..|+++.|+| .+..|++++.|.++.+|...... +...... ...+......+..|+|++
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~t--GiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENT--GIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCcc--ceEEEEEEeecccccccceeeEEEcCCC
Confidence 11348999999999999 89899999999999999876521 0111112 222334567889999999
Q ss_pred CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547 276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 355 (387)
Q Consensus 276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i 355 (387)
..+ ++-+..|..++|....... ........||.+.|.+++|+|.|.+|+ |.|.|.+-|+
T Consensus 329 ~~i-i~~g~~Gg~hlWkt~d~~~------------w~~~~~iSGH~~~V~dv~W~psGeflL--------svs~DQTTRl 387 (764)
T KOG1063|consen 329 NVI-IAHGRTGGFHLWKTKDKTF------------WTQEPVISGHVDGVKDVDWDPSGEFLL--------SVSLDQTTRL 387 (764)
T ss_pred CEE-EEecccCcEEEEeccCccc------------eeeccccccccccceeeeecCCCCEEE--------Eeccccceee
Confidence 864 5777899999998332111 122334579999999999999999998 7888899999
Q ss_pred EecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 356 WRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 356 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
|---..+ .+-..+...+-|.-..++++|-
T Consensus 388 Fa~wg~q--~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 388 FARWGRQ--QEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred ecccccc--cceeeecccccccccceeeehc
Confidence 8655211 1244566677788888888764
No 161
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=164.19 Aligned_cols=229 Identities=11% Similarity=0.247 Sum_probs=186.3
Q ss_pred CceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 88 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 88 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
+.|+++.|+|....|++|+.||++++|.++.... ..++.+.-
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------~~lqS~~l 255 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------PKLQSIHL 255 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------------------hhheeeee
Confidence 3699999999999999999999999999975322 23344455
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
...+|.+.+|.|+|...+++++....++.||+.+.+...+....++. ..+....+++ ++++|+..+..|.|.+....+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh
Confidence 56789999999999658999999999999999988744444444444 3567888999 999999999999999999998
Q ss_pred CCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--Ce
Q 016547 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KV 324 (387)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v 324 (387)
+..+.+++ -++.|..++|+.+++.|+++ +.+|.|.+||++... ++..+.. .+ .-
T Consensus 335 ------~eli~s~K-ieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~---------------~~~rf~D-~G~v~g 390 (514)
T KOG2055|consen 335 ------KELITSFK-IEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNS---------------CLHRFVD-DGSVHG 390 (514)
T ss_pred ------hhhhheee-eccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcc---------------eEEEEee-cCccce
Confidence 88888888 57889999999999987654 558899999999852 2333222 22 23
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
++++.++++.+++ +|+..|.|.|||.++.......+++..+..-...|++++|+|
T Consensus 391 ts~~~S~ng~ylA--------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 391 TSLCISLNGSYLA--------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred eeeeecCCCceEE--------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 6777889999877 888889999999988777778899999999999999999987
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=164.63 Aligned_cols=280 Identities=16% Similarity=0.261 Sum_probs=202.7
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
+....+|.+.|+++.|+. ++++||+|+.|..+++|+++...... ..+++.....|..+.|.|++|...++++.
T Consensus 49 qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~ 121 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK------TPKPIGVMEHPHRSNIFSLEFDLENRFLY 121 (609)
T ss_pred hhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc------CCCCceeccCccccceEEEEEccCCeeEe
Confidence 345668999999999999 79999999999999999987653222 22677777666655799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|..+++|...|+++.+.+.... -....+.|..+..+|.. +
T Consensus 122 SG~~~~~VI~HDiEt~qsi~V~~--------------------------------------~~~~~~~VY~m~~~P~D-N 162 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQSIYVAN--------------------------------------ENNNRGDVYHMDQHPTD-N 162 (609)
T ss_pred cCCCcceeEeeecccceeeeeec--------------------------------------ccCcccceeecccCCCC-c
Confidence 99999999999998754321111 11234589999999996 8
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEe-eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC-----------
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG----------- 251 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------- 251 (387)
.|++.+.++.|.+||.+....+....+ .........+.|+|....+|++.+..+-+.+||.+..+...
T Consensus 163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~ 242 (609)
T KOG4227|consen 163 TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ 242 (609)
T ss_pred eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc
Confidence 999999999999999998764333232 33456788999999888999999999999999998753210
Q ss_pred ------------CCC---------ceE----------Eec-ccc-------ceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 252 ------------VGS---------PIN----------KFE-GHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 252 ------------~~~---------~~~----------~~~-~~~-------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
.+. +.. .++ .|. ..+.+++|..+.. +++|+.+-.|++|.
T Consensus 243 ~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 243 ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWK 320 (609)
T ss_pred cchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEe
Confidence 011 100 111 011 2355666765544 57999999999999
Q ss_pred CCCCCceeccCC--C------CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 293 YEKVGKKVEQGP--R------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 293 ~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+........... + ......+.+..+.+|..-++.+.|+|....|+ +.|..+.++||.--
T Consensus 321 lP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~--------SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 321 LPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV--------SSGVENSFKLWSDH 387 (609)
T ss_pred cCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe--------ccchhhheeccccc
Confidence 986544332111 1 11122345667899999999999999766554 66777999999754
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=7.6e-23 Score=153.51 Aligned_cols=289 Identities=13% Similarity=0.186 Sum_probs=194.4
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
+.+|.+.|+++.|-. ++ +|.+|..-|.|++|++.+. +....++++....|+.+.--|+ ..|.+-+
T Consensus 10 LRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~------------r~~~~~r~~g~~~it~lq~~p~-d~l~tqg 74 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTE------------RDLPLIRLFGRLFITNLQSIPN-DSLDTQG 74 (323)
T ss_pred eccccchheehhhcc-ch-hhhcccccceEEEEEeecC------------ccchhhhhhccceeeceeecCC-cchhhcC
Confidence 348999999999876 44 4889999999999999998 6777788666668888988887 5688889
Q ss_pred CCCeEEEEEcCCCcCccccCC---------CcccCCCCCC-ceeccCCCCCCCCCCCCCCCCCCCceee----cCCCCCe
Q 016547 107 KDKSVVLWSIQDHITSSATDP---------ATAKSAGSSG-SIIKQSPKPGDGNDKAADGPSVGPRGIY----NGHEDTV 172 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v 172 (387)
+|+.+.+|++........... .......... ............ ....+......+... .+..+.+
T Consensus 75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCce
Confidence 999999999986422211110 0000000000 011111111111 111111111111111 2345667
Q ss_pred EEEEEccC-CC-eeEEEecCCCeEEEEEccCCCC--------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 173 EDVTFCPS-SA-QEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 173 ~~~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
.|..+.-+ +. -+++.|-++|.+.+||+.++.. +.......|..+|.++.+.+ .-+.=++|+.+..+..|
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceee
Confidence 77775322 22 3566788999999999998631 12334556899999999998 66666788888889999
Q ss_pred EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547 243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 322 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
++...... .+...++.-....|..+..-||++ ++|+++.|++||||+.++. +.+..+.-|..
T Consensus 233 Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa 294 (323)
T KOG0322|consen 233 SLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA 294 (323)
T ss_pred eeccccCc--ccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------------Cchhhhhhhhc
Confidence 88753211 111222222345688999999999 7899999999999999986 34667788999
Q ss_pred CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
.|++++|+|+-+.++ .++.|++|.+|++
T Consensus 295 gvn~vAfspd~~lmA--------aaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMA--------AASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhh--------hccCCceEEeeec
Confidence 999999999876555 6667799999986
No 164
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.5e-22 Score=171.53 Aligned_cols=223 Identities=19% Similarity=0.298 Sum_probs=177.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
|...|.+++... .+|++|+.+++|.+|.+..+ .....+.-.+- ++.+++++.+|++++.||.|-
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~------------~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~ 118 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG------------EEDTILARFTL-PIRDLAVSGSGKMIAAGSDDT 118 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCC------------Cccceeeeeec-cceEEEEecCCcEEEeecCce
Confidence 788899998644 48999999999999999988 23323333333 688999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|++-++.+.. ....+++|.++|.++.|+|.+ ++|++.+
T Consensus 119 ~vK~~~~~D~s----------------------------------------~~~~lrgh~apVl~l~~~p~~-~fLAvss 157 (933)
T KOG1274|consen 119 AVKLLNLDDSS----------------------------------------QEKVLRGHDAPVLQLSYDPKG-NFLAVSS 157 (933)
T ss_pred eEEEEeccccc----------------------------------------hheeecccCCceeeeeEcCCC-CEEEEEe
Confidence 99999987543 237789999999999999999 8999999
Q ss_pred CCCeEEEEEccCCCCceeEEee-------c-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547 190 DDSCLILWDARVGTSPVIKVEK-------A-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 260 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~-------~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~- 260 (387)
-||.|++||+.++.. ...+. . ....+..++|+| ++..|++...|+.|++|+... +.....+.
T Consensus 158 ~dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~ 228 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------WELQFKLRD 228 (933)
T ss_pred cCceEEEEEcccchh--hhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------ceeheeecc
Confidence 999999999998762 22111 1 134567899999 888888889999999999998 77766664
Q ss_pred -cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 261 -GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 261 -~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
.+...+..++|+|+|+| ||+++.||.|.|||.++... ......|.+++|.|+.+.+-+
T Consensus 229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~~-------------------~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHER-------------------HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred cccccceEEEEEcCCCcE-EeeeccCCcEEEEecccchh-------------------ccccceeEEEecCCCCCeeEE
Confidence 34455999999999997 57999999999999997211 223357899999998876543
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=1.1e-21 Score=155.50 Aligned_cols=216 Identities=18% Similarity=0.386 Sum_probs=171.6
Q ss_pred EEEeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (387)
-.+.||++ +|..++|+| +...||+||.|.+|.||++....... .-
T Consensus 75 P~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------------------------------~l 120 (472)
T KOG0303|consen 75 PLVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------------------------------DL 120 (472)
T ss_pred CCccCccc-cccccccCccCCceeecCCCCceEEEEECCCccccc---------------------------------Cc
Confidence 45789998 799999999 55679999999999999997643321 11
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 238 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 238 (387)
.+++..+.+|+..|--++|+|.-.+.|++++.|.+|.+||+.+++ .+..+. |...|.++.|+. +|.+|++.+.|..
T Consensus 121 tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDKk 196 (472)
T KOG0303|consen 121 TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKK 196 (472)
T ss_pred ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccce
Confidence 256688999999999999999988999999999999999999998 455554 999999999999 9999999999999
Q ss_pred EEEEEeccCCCCCCCCceEEeccccce-EEEEEEcCCCCeeEEEec---CCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 314 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 314 (387)
||+||.++ ++.+.+-.+|.+. -..+.|-.++. ++.+|- .+..+-+||-.+..++. .+
T Consensus 197 vRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~------------~~ 257 (472)
T KOG0303|consen 197 VRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPI------------AL 257 (472)
T ss_pred eEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcc------------ee
Confidence 99999999 8888888888753 45667778887 554443 47789999988865542 23
Q ss_pred eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
..+.. +..|.---|.++...+.+ +|-.|+.||-|.+.+
T Consensus 258 ~elDt-SnGvl~PFyD~dt~ivYl-------~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 258 QELDT-SNGVLLPFYDPDTSIVYL-------CGKGDSSIRYFEITN 295 (472)
T ss_pred EEecc-CCceEEeeecCCCCEEEE-------EecCCcceEEEEecC
Confidence 33333 345555557888777766 555679999999984
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=1.8e-21 Score=154.27 Aligned_cols=215 Identities=22% Similarity=0.358 Sum_probs=168.4
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEe
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 105 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~ 105 (387)
..||+++|..++|+|.+...+|+|+.|.+|.||++...-....+ ..++..|.+|.. .|-.++|+|. .+.|+++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-----tepvv~L~gH~r-rVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-----TEPVVELYGHQR-RVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-----ccceEEEeecce-eEEEEeecccchhhHhhc
Confidence 35899999999999999999999999999999999876433322 268899999998 7999999996 4578899
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|.+|.+||+.++... ..+. |.+.|.++.|+-+| .++
T Consensus 151 g~Dn~v~iWnv~tgeal----------------------------------------i~l~-hpd~i~S~sfn~dG-s~l 188 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEAL----------------------------------------ITLD-HPDMVYSMSFNRDG-SLL 188 (472)
T ss_pred cCCceEEEEeccCCcee----------------------------------------eecC-CCCeEEEEEeccCC-cee
Confidence 99999999999876432 3333 99999999999999 889
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCC-CeeEEEecCCCCCeEEEee---CCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
++.+.|..|++||.++++ .+..-.+|.+ ....+.|-. ++.++-+|. .+..+-+||..+... .-...++..
T Consensus 189 ~TtckDKkvRv~dpr~~~--~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~e---P~~~~elDt 262 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGT--VVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEE---PIALQELDT 262 (472)
T ss_pred eeecccceeEEEcCCCCc--EeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccC---cceeEEecc
Confidence 999999999999999998 4444456654 234455655 677665554 367899999887532 222334443
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+..|.---|.++...+..+|-.|+.|+-|.+...
T Consensus 263 -SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 263 -SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 4456666788888888888989999999999874
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.5e-21 Score=161.00 Aligned_cols=256 Identities=16% Similarity=0.195 Sum_probs=194.7
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
+.+.....+-.+.|.+++|.+ ++ .|.+.+.+|.|.-||+.+. ++...+....+ +|++++.+|.+.
T Consensus 59 ~~~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~l------------k~~~~~d~~gg-~IWsiai~p~~~ 123 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTL------------KQKYNIDSNGG-AIWSIAINPENT 123 (691)
T ss_pred eeeEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEecccC------------ceeEEecCCCc-ceeEEEeCCccc
Confidence 444333334568899999995 44 5677788999999999999 67777776665 799999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.++.|+.||.+...+...+... ....+...++.|.++.|.|+
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~--------------------------------------~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKIT--------------------------------------YKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred eEEeecCCceEEEEecCCceEE--------------------------------------EEeecccccceEEEEEecCC
Confidence 9999999997777766543221 11344556789999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEE-----ee-ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKV-----EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
+ ..+++|+.||.|++||..++....+.. .. ....-|.++.+-. ...+++|...|.|.+||... +.
T Consensus 166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~------gT 236 (691)
T KOG2048|consen 166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF------GT 236 (691)
T ss_pred c-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC------cc
Confidence 9 779999999999999999887322111 11 1223456677664 67899999999999999999 99
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
.+.++..|.+.|.+++..+++.+++ +++.|+.|..|........ +........|...|.+++..++
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~-----------wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSE-----------WVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccc-----------eeeeccccCCcccceeeeeecc--
Confidence 9999999999999999999988755 8888999988887764331 1123334678888999998876
Q ss_pred eEEEEecCCCCCCCCCceEEEEecCC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.++ +||.|.++.+-....
T Consensus 303 ~l~--------sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 ALI--------SGGRDFTLAICSSRE 320 (691)
T ss_pred eEE--------ecceeeEEEEccccc
Confidence 455 788888888876653
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.7e-21 Score=148.14 Aligned_cols=245 Identities=16% Similarity=0.272 Sum_probs=180.0
Q ss_pred cCCCcEEEEEecC------CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--ceEEEEECCCCC
Q 016547 29 IHPGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEP 100 (387)
Q Consensus 29 ~h~~~v~~i~~~~------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~~~~ 100 (387)
...+.|...+|-| ++..++|+.+.+.-|.+||.-+++.+... ....|.+. .-.+++|+|||.
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy----------~~ydh~de~taAhsL~Fs~DGe 171 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY----------RAYDHQDEYTAAHSLQFSPDGE 171 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch----------hhhhhHHhhhhheeEEecCCCC
Confidence 3567777777763 37789999999999999999999433221 11112210 235899999999
Q ss_pred EEEEecCCCeEEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 101 YVLSGGKDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+|+.|- ...|+++|+.. +........ ...--.+..+-+.+++|+|
T Consensus 172 qlfaGy-krcirvFdt~RpGr~c~vy~t---------------------------------~~~~k~gq~giisc~a~sP 217 (406)
T KOG2919|consen 172 QLFAGY-KRCIRVFDTSRPGRDCPVYTT---------------------------------VTKGKFGQKGIISCFAFSP 217 (406)
T ss_pred eEeecc-cceEEEeeccCCCCCCcchhh---------------------------------hhcccccccceeeeeeccC
Confidence 999875 68999999943 221111100 0011234467899999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCceEE
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
.....++.++....+-||.-..+. .+..+.+|.+.|+.++|.+ +|+.|.+|+. |-.|..||+|.. ..++..
T Consensus 218 ~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~ 289 (406)
T KOG2919|consen 218 MDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS-----RDPVYA 289 (406)
T ss_pred CCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc-----cchhhh
Confidence 987899999999999998866665 5667779999999999999 9999999887 778999999974 677888
Q ss_pred eccccc-eEEE--EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 259 FEGHSA-AVLC--VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 259 ~~~~~~-~i~~--~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
+..|.. .-.. ....|+++ +||+|+.||.|++||+...+.. ...+..|...++.++++|--+.
T Consensus 290 L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~--------------~sv~~~~sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNE--------------VSVTGNYSDTVNGVSLNPIMPI 354 (406)
T ss_pred hhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCc--------------ccccccccccccceecCcccce
Confidence 877765 3333 44568888 5789999999999999986542 3345678889999999998664
Q ss_pred EEEEec
Q 016547 336 TVVSVS 341 (387)
Q Consensus 336 l~~s~s 341 (387)
+ +++|
T Consensus 355 l-atss 359 (406)
T KOG2919|consen 355 L-ATSS 359 (406)
T ss_pred e-eecc
Confidence 4 4443
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=8e-22 Score=152.60 Aligned_cols=258 Identities=21% Similarity=0.323 Sum_probs=186.5
Q ss_pred ecCCCcEEEEEecCC---CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEE
Q 016547 28 IIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVL 103 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~ 103 (387)
..|...-..++|+-+ ...++|.|+.-|.|+|.|+.++ +....+.+|.. .|+.|.+.|+. ++++
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~-sINeik~~p~~~qlvl 152 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGG-SINEIKFHPDRPQLVL 152 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh------------hhccceeccCc-cchhhhcCCCCCcEEE
Confidence 346667777777642 3468899999999999999998 77888999998 69999999965 6899
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
++|.|.+|++|++++..+...+ .-+.+|.+.|.++.|++++ .
T Consensus 153 s~SkD~svRlwnI~~~~Cv~Vf-------------------------------------GG~egHrdeVLSvD~~~~g-d 194 (385)
T KOG1034|consen 153 SASKDHSVRLWNIQTDVCVAVF-------------------------------------GGVEGHRDEVLSVDFSLDG-D 194 (385)
T ss_pred EecCCceEEEEeccCCeEEEEe-------------------------------------cccccccCcEEEEEEcCCC-C
Confidence 9999999999999987654333 2246899999999999999 6
Q ss_pred eEEEecCCCeEEEEEccCCCC--------------------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 184 EFCSVGDDSCLILWDARVGTS--------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
.+++++.|..+++|++...+. +.......|...|-|+.| -++++++-+-++
T Consensus 195 ~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscen 271 (385)
T KOG1034|consen 195 RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCEN 271 (385)
T ss_pred eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---HhhheeecccCc
Confidence 899999999999999984321 000012235666667776 468999999999
Q ss_pred eEEEEEeccCCC--------CCCCCceEEeccccceEEEE--EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547 238 SVRMFDRRNLTS--------NGVGSPINKFEGHSAAVLCV--QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 307 (387)
Q Consensus 238 ~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~i~~~--~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 307 (387)
.|..|....... ......+.++......|.-+ +|.|-++ +||.|.+.|.|.+||++....+..
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~~------ 344 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPKC------ 344 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCccC------
Confidence 999998732211 01122334444444555555 4556666 578999999999999998543211
Q ss_pred CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...........|...+|+.|+..|++.| .|++|.-||..
T Consensus 345 -----ttl~~s~~~~tVRQ~sfS~dgs~lv~vc--------dd~~Vwrwdrv 383 (385)
T KOG1034|consen 345 -----TTLTHSKSGSTVRQTSFSRDGSILVLVC--------DDGTVWRWDRV 383 (385)
T ss_pred -----ceEEeccccceeeeeeecccCcEEEEEe--------CCCcEEEEEee
Confidence 1112223345899999999999887544 34899888854
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=2.9e-21 Score=149.53 Aligned_cols=271 Identities=15% Similarity=0.247 Sum_probs=190.3
Q ss_pred eeeeecCCCcEEEEEecC----CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE--eccCCCceEEEEECC
Q 016547 24 KHKTIIHPGEVNRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCP 97 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~v~~~~~~~ 97 (387)
......|+.+|..++|++ +....+||.+.+ .+.+|+....-.. +.++.. ..|.. ..+.++|+-
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i---------r~lq~y~D~d~~E-sfytcsw~y 99 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI---------RLLQSYADEDHDE-SFYTCSWSY 99 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce---------eeeeeccCCCCCc-ceEEEEEEe
Confidence 334456999999999986 456788887765 6889987665200 111111 12443 456778865
Q ss_pred C----CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547 98 T----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 173 (387)
Q Consensus 98 ~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 173 (387)
+ ..++|.++.-|.|+|.|+.+++. ...+.+|...|+
T Consensus 100 d~~~~~p~la~~G~~GvIrVid~~~~~~----------------------------------------~~~~~ghG~sIN 139 (385)
T KOG1034|consen 100 DSNTGNPFLAAGGYLGVIRVIDVVSGQC----------------------------------------SKNYRGHGGSIN 139 (385)
T ss_pred cCCCCCeeEEeecceeEEEEEecchhhh----------------------------------------ccceeccCccch
Confidence 3 45889999999999999986543 366789999999
Q ss_pred EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC-
Q 016547 174 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS- 249 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~- 249 (387)
.+.++|+.++++++++.|..|++|++++.. ++..+ .+|...|.++.|++ ++.++++++.|..|.+|++...+-
T Consensus 140 eik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 140 EIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred hhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHh
Confidence 999999999999999999999999999988 55544 57999999999999 999999999999999999984210
Q ss_pred -----------CCCC-------CceE---EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547 250 -----------NGVG-------SPIN---KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 308 (387)
Q Consensus 250 -----------~~~~-------~~~~---~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 308 (387)
++.. ..+. +-..|...|.|+.|-- .+ +.+-+-++.|..|..-..++...... .+.
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~-ilSkscenaI~~w~pgkl~e~~~~vk-p~e 292 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DF-ILSKSCENAIVCWKPGKLEESIHNVK-PPE 292 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hh-eeecccCceEEEEecchhhhhhhccC-CCc
Confidence 0000 0111 2234677788888765 43 45888899999998844333322111 111
Q ss_pred CCceeeeeeccCCCCeeEE--EEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 309 YPAGLFFQHAGHRDKVVDF--HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.....+..+.-....|.-+ +|.|-++.|+ .|...|.|.+||++.
T Consensus 293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la--------~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLA--------LGNQSGKVYVWDLDN 338 (385)
T ss_pred cceeeeeEeccCccceEEEEEeecHHHHHHh--------hccCCCcEEEEECCC
Confidence 2223344444445555555 4566677777 788889999999994
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=3.3e-21 Score=153.25 Aligned_cols=184 Identities=21% Similarity=0.343 Sum_probs=141.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
...+|..+.|.+...+.+|||+.|..|+||.+...+....- ........+..|+. .|+++.|+|+|..|++|+.+|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~-aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTR-AVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcc-eeEEEEEcCCcCeeeecCCCc
Confidence 35789999999966669999999999999999877433210 11244567888887 799999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.+|....-... .. +. ....+.+.+.....+.+|...|..++|+|++ +++++++
T Consensus 88 ~v~lWk~~~~~~~---~~--------------------d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s 142 (434)
T KOG1009|consen 88 EVFLWKQGDVRIF---DA--------------------DT-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGS 142 (434)
T ss_pred eEEEEEecCcCCc---cc--------------------cc-hhhhCccceEEEEEecccccchhhhhccCCC-ceeeeee
Confidence 9999987641000 00 00 0011122344456778899999999999999 8999999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
.|..+++||+..+. ....+..|...+..++|.| -++++++-+.|...+.+++.
T Consensus 143 ~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeee
Confidence 99999999999998 6777888999999999999 78888888777765555543
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.4e-21 Score=162.75 Aligned_cols=233 Identities=16% Similarity=0.249 Sum_probs=179.2
Q ss_pred CCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547 76 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 155 (387)
Q Consensus 76 ~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (387)
..+-..+.+|++ .|.+|...|.|.+|++|+.||+|++|.+.++.++....
T Consensus 390 t~~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------- 439 (733)
T KOG0650|consen 390 TRCALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------- 439 (733)
T ss_pred ceeeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-----------------------------
Confidence 356678999998 79999999999999999999999999999876643321
Q ss_pred CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC--------------------------------
Q 016547 156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-------------------------------- 203 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------- 203 (387)
..+.|.|++|+|.+...++..+....+.+-+..-+.
T Consensus 440 ------------~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~ 507 (733)
T KOG0650|consen 440 ------------FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASL 507 (733)
T ss_pred ------------ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhh
Confidence 245799999999875555555555555555432210
Q ss_pred -C--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe
Q 016547 204 -S--PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277 (387)
Q Consensus 204 -~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 277 (387)
. .-+.....|...|+.|.|+. .|.+|++...+ ..|.|+++.. .....-|+...+.|.++.|+|...+
T Consensus 508 ~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK------~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 508 DELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSK------RKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred hhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEeccc------ccccCchhhcCCceeEEEecCCCce
Confidence 0 01223345788999999999 99999998775 4688999886 4444445445678999999999998
Q ss_pred eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547 278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 278 ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~ 357 (387)
+|++. ...|+|||+... .++..+......|..|+.+|.|..++ .|+.|+.+..+|
T Consensus 581 lfVaT--q~~vRiYdL~kq---------------elvKkL~tg~kwiS~msihp~GDnli--------~gs~d~k~~WfD 635 (733)
T KOG0650|consen 581 LFVAT--QRSVRIYDLSKQ---------------ELVKKLLTGSKWISSMSIHPNGDNLI--------LGSYDKKMCWFD 635 (733)
T ss_pred EEEEe--ccceEEEehhHH---------------HHHHHHhcCCeeeeeeeecCCCCeEE--------EecCCCeeEEEE
Confidence 77443 567999999873 23444555667899999999999999 788889999999
Q ss_pred cCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 358 MSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
++- +.++.+++.-|...|++|+||+
T Consensus 636 ldl-----sskPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 636 LDL-----SSKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred ccc-----CcchhHHhhhhhhhhhhhhhcc
Confidence 994 5678999999999999999986
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-20 Score=138.98 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=176.3
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
..|.+-+++| .+++|+.|+.+|+|.+..+........ .+....++...++|.+ +|+.++|. ..+|++|+ ||.|
T Consensus 11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv~eqahdg-piy~~~f~--d~~Lls~g-dG~V 83 (325)
T KOG0649|consen 11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIVPEQAHDG-PIYYLAFH--DDFLLSGG-DGLV 83 (325)
T ss_pred HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhcccc--CCCCCcceeeccccCC-Ceeeeeee--hhheeecc-CceE
Confidence 3466677888 889999999999999999876532222 1122245556688987 89999997 56788887 6999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
+-|..++........+ +|.... +.+.-...--.|+++-..|.. +-++.++.|
T Consensus 84 ~gw~W~E~~es~~~K~-------------------------lwe~~~--P~~~~~~evPeINam~ldP~e-nSi~~AgGD 135 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKR-------------------------LWEVKI--PMQVDAVEVPEINAMWLDPSE-NSILFAGGD 135 (325)
T ss_pred EEeeehhhhhhccchh-------------------------hhhhcC--ccccCcccCCccceeEeccCC-CcEEEecCC
Confidence 9998875433211111 000000 001001112468899999887 556666689
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---------c
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---------H 262 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---------~ 262 (387)
+.++-||+++++ ..+.+.+|...+.++.-.. ....+++|+.||++|+||.++ .+.+..+.. |
T Consensus 136 ~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 136 GVIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIEPYKNPNLLRPD 206 (325)
T ss_pred eEEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEeccccChhhcCcc
Confidence 999999999999 7889999999999999865 677899999999999999999 777766642 2
Q ss_pred -cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 263 -SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 263 -~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
...|.+++-+.+ + +++| ....+.+|.++.... .+++.+.+ .+..+.|..+ .++
T Consensus 207 ~g~wigala~~ed--W-lvCG-gGp~lslwhLrsse~-------------t~vfpipa---~v~~v~F~~d--~vl---- 260 (325)
T KOG0649|consen 207 WGKWIGALAVNED--W-LVCG-GGPKLSLWHLRSSES-------------TCVFPIPA---RVHLVDFVDD--CVL---- 260 (325)
T ss_pred cCceeEEEeccCc--e-EEec-CCCceeEEeccCCCc-------------eEEEeccc---ceeEeeeecc--eEE----
Confidence 235677776554 4 4344 467799999998422 33444444 4566677643 344
Q ss_pred CCCCCCCCCceEEEEecC
Q 016547 342 DDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~ 359 (387)
++|..+.|.-|.++
T Consensus 261 ----~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 261 ----IGGEGNHVQSYTLN 274 (325)
T ss_pred ----Eeccccceeeeeec
Confidence 56666889999887
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=148.65 Aligned_cols=200 Identities=12% Similarity=0.196 Sum_probs=152.8
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
.|+.|++.|.+||+|..||.|.+||+.+.. .-..+.+|..
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~~ 66 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHVR 66 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhcccc
Confidence 699999999999999999999999997632 3366789999
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
+|.+++|+++| ++|++++.|..|.+||+..+. +...+ ...++|....|+|.+.+..++.-.+..-.+.++..+.
T Consensus 67 pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs--~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-- 140 (405)
T KOG1273|consen 67 PITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGS--PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-- 140 (405)
T ss_pred ceeEEEecCCC-CEeeeecCCceeEEEeccCCC--ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--
Confidence 99999999999 899999999999999999998 44444 3578999999999766777666666666666665411
Q ss_pred CCCCceEEecc---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC-CCeeE
Q 016547 251 GVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVD 326 (387)
Q Consensus 251 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 326 (387)
..+..... .+....+..|.+.|++++ +|...|.+.++|..+. .++..+.-.. ..|..
T Consensus 141 ---h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsKGkllv~~a~t~---------------e~vas~rits~~~IK~ 201 (405)
T KOG1273|consen 141 ---HSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSKGKLLVYDAETL---------------ECVASFRITSVQAIKQ 201 (405)
T ss_pred ---eeeccCCCccccccccccccccCCCCEEE-EecCcceEEEEecchh---------------eeeeeeeechheeeeE
Confidence 11111110 111223446889999865 8999999999999985 3444444444 68899
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 363 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~ 363 (387)
+.++..|++++ .-..|..||.|++.+...
T Consensus 202 I~~s~~g~~li--------iNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 202 IIVSRKGRFLI--------INTSDRVIRTYEISDIDD 230 (405)
T ss_pred EEEeccCcEEE--------EecCCceEEEEehhhhcc
Confidence 99999999999 555668999999986543
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=8.6e-21 Score=160.43 Aligned_cols=273 Identities=12% Similarity=0.162 Sum_probs=191.5
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 112 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~ 112 (387)
.|+.++|-| +|..|+.+.. ..+.+||...+ ..+..+++|.+ .|+|++|+.||+.+++|+.|+.|.
T Consensus 14 ci~d~afkP-DGsqL~lAAg-~rlliyD~ndG------------~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAG-SRLLVYDTSDG------------TLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECC-CCceEEEecC-CEEEEEeCCCc------------ccccccccccc-eEEEEEEccCCceeccCCCceeEE
Confidence 899999999 5555555443 47999999999 78889999998 799999999999999999999999
Q ss_pred EEEcCCCcCccc--cCC-CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 113 LWSIQDHITSSA--TDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 113 vwd~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+|+-+-...... .+. +..........+..++ .....+|...+... .. ......+.+.+|..|| ++++.|-
T Consensus 79 ~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCs----LsdFglWS~~qK~V-~K-~kss~R~~~CsWtnDG-qylalG~ 151 (1081)
T KOG1538|consen 79 IWTSKLEGILKYSHNDAIQCMSFNPITHQLASCS----LSDFGLWSPEQKSV-SK-HKSSSRIICCSWTNDG-QYLALGM 151 (1081)
T ss_pred EecccccceeeeccCCeeeEeecCchHHHhhhcc----hhhccccChhhhhH-Hh-hhhheeEEEeeecCCC-cEEEEec
Confidence 998653211100 000 0000000000000000 01112222222111 11 1124568899999999 8999999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC----CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD----DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
.+|+|.+-+....+...+....+..++|.+++|+|.. ...+++.....++.+|.+. ++.+..-+..+..
T Consensus 152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r~L~Fd 224 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDRALNFD 224 (1081)
T ss_pred cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccccCCCC
Confidence 9999999976555533344444577899999999943 2578888888888888887 5555544445556
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
..|+.+.++|.+++ .|+.|+.+++|--+. -.+.++.....+|+.++..|++++++
T Consensus 225 P~CisYf~NGEy~L-iGGsdk~L~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~-------- 279 (1081)
T KOG1538|consen 225 PCCISYFTNGEYIL-LGGSDKQLSLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVV-------- 279 (1081)
T ss_pred chhheeccCCcEEE-EccCCCceEEEeecC----------------eEEeeccccceeEEEEEEccCCceEE--------
Confidence 77999999999877 666799999997554 23455556778999999999999988
Q ss_pred CCCCCceEEEEecC
Q 016547 346 STGGGGTLQIWRMS 359 (387)
Q Consensus 346 tg~~dg~i~iw~~~ 359 (387)
.|..||+|--|++-
T Consensus 280 ~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLI 293 (1081)
T ss_pred EEEccCeeehhhhH
Confidence 67788999999876
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=175.33 Aligned_cols=261 Identities=23% Similarity=0.342 Sum_probs=201.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.++.+|...|.|+.|.. .+.+++||++|..|+||..++. .++..+.||.+ .|+.++.+.++.++++
T Consensus 184 krLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~------------~~lAs~rGhs~-ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETA------------RCLASCRGHSG-DITDLAVSSNNTMIAA 249 (1113)
T ss_pred HHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccch------------hhhccCCCCcc-ccchhccchhhhhhhh
Confidence 45678999999999988 9999999999999999999998 78889999998 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|..|++|.+.+ ..++..+.+|++.|++++|+|.-
T Consensus 250 aS~D~vIrvWrl~~----------------------------------------~~pvsvLrghtgavtaiafsP~~--- 286 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPD----------------------------------------GAPVSVLRGHTGAVTAIAFSPRA--- 286 (1113)
T ss_pred cccCceEEEEecCC----------------------------------------CchHHHHhccccceeeeccCccc---
Confidence 99999999999875 44567889999999999999864
Q ss_pred EEEecCCCeEEEEEccCCCCceeEE---ee-ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKV---EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
+.+.||++++||.+-.- .... .. .....+.++.+.. .+.-+++++.|+.-..|.+.... +
T Consensus 287 --sss~dgt~~~wd~r~~~--~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~----~------- 350 (1113)
T KOG0644|consen 287 --SSSDDGTCRIWDARLEP--RIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA----W------- 350 (1113)
T ss_pred --cCCCCCceEeccccccc--cccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh----h-------
Confidence 77899999999988211 1111 11 1234566777777 88899999999998888766421 1
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
+...+.-+.++.+...+.+++-.+-.+++|++..+ .+...+.+|...+..+.++|-+..++.
T Consensus 351 -~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------------~l~H~l~ghsd~~yvLd~Hpfn~ri~m-- 412 (1113)
T KOG0644|consen 351 -RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------------QLLHNLMGHSDEVYVLDVHPFNPRIAM-- 412 (1113)
T ss_pred -hccceEEEeccccccccceeeeeeeEeeeeecccc---------------hhhhhhcccccceeeeeecCCCcHhhh--
Confidence 22222222333233334557777889999999886 345667899999999999999998887
Q ss_pred cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.|.||...|||+- .+.+++....-...+...+||+
T Consensus 413 -----sag~dgst~iwdi~------eg~pik~y~~gh~kl~d~kFSq 448 (1113)
T KOG0644|consen 413 -----SAGYDGSTIIWDIW------EGIPIKHYFIGHGKLVDGKFSQ 448 (1113)
T ss_pred -----hccCCCceEeeecc------cCCcceeeecccceeeccccCC
Confidence 55666999999999 6777765544355666667764
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=6.5e-19 Score=156.11 Aligned_cols=269 Identities=23% Similarity=0.468 Sum_probs=205.0
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEE-CCCCC-EEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEP-YVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~-~~~~~-~l~ 103 (387)
....|...+.++.+.+ .+..++.++.|+.+.+|+..... .....+.++....+..+.+ ++++. +++
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence 4567999999999998 88888888899999999998872 1445555533224566666 88887 555
Q ss_pred EecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 104 SGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 104 s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
..+. |+.+.+|+... .......+..|...|..++|+|++
T Consensus 128 ~~~~~d~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~- 167 (466)
T COG2319 128 ASSSLDGTVKLWDLST---------------------------------------PGKLIRTLEGHSESVTSLAFSPDG- 167 (466)
T ss_pred ccCCCCccEEEEEecC---------------------------------------CCeEEEEEecCcccEEEEEECCCC-
Confidence 5444 99999999974 112336678899999999999999
Q ss_pred eeEEEecC-CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceE-Ee
Q 016547 183 QEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN-KF 259 (387)
Q Consensus 183 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~ 259 (387)
..+++++. |+.+++|++.... ....+..|...+.+++|+| ++. .+++++.|+.|++||... +..+. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~ 238 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTL 238 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeec
Confidence 57777775 9999999998855 5666777999999999998 777 555559999999998885 66766 68
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
..|.... ...|+|++.. +++++.|+.+++|++...... .....+|...+.++.|.|++..++
T Consensus 239 ~~~~~~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~-- 300 (466)
T COG2319 239 SGHSDSV-VSSFSPDGSL-LASGSSDGTIRLWDLRSSSSL--------------LRTLSGHSSSVLSVAFSPDGKLLA-- 300 (466)
T ss_pred CCCCcce-eEeECCCCCE-EEEecCCCcEEEeeecCCCcE--------------EEEEecCCccEEEEEECCCCCEEE--
Confidence 8887775 4489999964 568999999999999975331 222267888999999999888877
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhh--hccCceEEEeee
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL--EKFKAHVISCTS 385 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~v~~~~f 385 (387)
+++.|+.+++|++. ........ ..|...+..+.|
T Consensus 301 ------~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 301 ------SGSSDGTVRLWDLE------TGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred ------EeeCCCcEEEEEcC------CCceEEEeeecccCCceEEEEE
Confidence 44555889999888 34333333 367777777776
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=8.1e-20 Score=158.36 Aligned_cols=240 Identities=23% Similarity=0.411 Sum_probs=173.4
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
++.+.||+++... .+...+.... .|.+++|+| +..+++.|..+|.|.+||+..+.....
T Consensus 221 ~~~~~vW~~~~p~-----------~Pe~~~~~~s--~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------- 280 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-----------TPELVLESPS--EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------- 280 (555)
T ss_pred CceEEEEecCCCC-----------CceEEEecCC--ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------
Confidence 3479999998762 4555555544 589999999 466788888999999999986543210
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-eeEEEecCCCeEEEEEccCCCCceeEEe
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVE 210 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 210 (387)
.........|..++..+.|..+-. .-|++++.||.|+.|+++.-..+.....
T Consensus 281 ---------------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~ 333 (555)
T KOG1587|consen 281 ---------------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL 333 (555)
T ss_pred ---------------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence 001133457899999999976531 3488899999999999876543221111
Q ss_pred ----e------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC--CCCCceEEeccccceEEEEEEcCCCCee
Q 016547 211 ----K------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--GVGSPINKFEGHSAAVLCVQWSPDKSSV 278 (387)
Q Consensus 211 ----~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l 278 (387)
. .....+++++|.+.+.+.|++|+.+|.|.--+....... ...+.+..+..|.++|+++.++|-+..+
T Consensus 334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence 1 123468899999988999999999999877443332111 0123344666789999999999998887
Q ss_pred EEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 279 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 279 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
|.+++ |-+++||...... ..+..+..+...|++++|||..+.+++++ ..||.|.+||+
T Consensus 414 fls~g-DW~vriWs~~~~~--------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~-------d~~G~l~iWDL 471 (555)
T KOG1587|consen 414 FLSVG-DWTVRIWSEDVIA--------------SPLLSLDSSPDYVTDVAWSPTRPAVFATV-------DGDGNLDIWDL 471 (555)
T ss_pred eeeec-cceeEeccccCCC--------------CcchhhhhccceeeeeEEcCcCceEEEEE-------cCCCceehhhh
Confidence 87777 9999999987322 23555666777899999999999999854 45599999999
Q ss_pred CCC
Q 016547 359 SDL 361 (387)
Q Consensus 359 ~~~ 361 (387)
...
T Consensus 472 l~~ 474 (555)
T KOG1587|consen 472 LQD 474 (555)
T ss_pred hcc
Confidence 854
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.7e-20 Score=151.59 Aligned_cols=295 Identities=22% Similarity=0.327 Sum_probs=210.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCC--CCE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPT--EPY 101 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~--~~~ 101 (387)
.++-+|.|.|..+.|+. .+..|++|+.|..|.+||.... ++... ..+|.. -|..-.|-|. .+.
T Consensus 136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~------------~~~l~f~SGH~~-NvfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSG------------SPKLSFESGHCN-NVFQAKFIPFSGDRT 201 (559)
T ss_pred hcccCCCCccceeeecc-cCceeeccCccceEEeehhhcc------------Cccccccccccc-chhhhhccCCCCCcC
Confidence 34557999999999999 9999999999999999999988 33333 456666 4667778774 457
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++++.||.|++=.+..... .+-...+..|.++|..++.-|+.
T Consensus 202 i~~~s~dgqvr~s~i~~t~~-------------------------------------~e~t~rl~~h~g~vhklav~p~s 244 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGY-------------------------------------VENTKRLAPHEGPVHKLAVEPDS 244 (559)
T ss_pred ceeccccCceeeeeeccccc-------------------------------------eecceecccccCccceeeecCCC
Confidence 99999999999887653211 11124567799999999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEe-eccCC---CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
++.|.+++.|+.+.-.|++.......... ..+.. ....++.+|.+...+++|+.|-.+++||.+..........+.
T Consensus 245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~ 324 (559)
T KOG1334|consen 245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD 324 (559)
T ss_pred CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence 99999999999999999988763222222 23333 567899999777799999999999999999865433333334
Q ss_pred Eeccc------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEE
Q 016547 258 KFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHW 329 (387)
Q Consensus 258 ~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 329 (387)
.+..| .-.|++++|+.++..+||+- .|-.|+++.-... .-..-.+..+. .......+.||.. .|..+-|
T Consensus 325 ~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~-~G~~p~~~s~~-~~~~k~vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 325 KFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMG-DGSEPDPSSPR-EQYVKRVYKGHRNSRTVKGVNF 401 (559)
T ss_pred hcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccc-cCCCCCCCcch-hhccchhhcccccccccceeee
Confidence 44322 34699999998877777555 5778999944332 11111111100 0111222567754 5777765
Q ss_pred -ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 330 -NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 330 -~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
-|...|++ +|+.=|.|.||+-. +++.++-+.+-...|+|+.=||
T Consensus 402 fGPrsEyVv--------SGSDCGhIFiW~K~------t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 402 FGPRSEYVV--------SGSDCGHIFIWDKK------TGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred ccCccceEE--------ecCccceEEEEecc------hhHHHHHhhcccceEeccCCCC
Confidence 56666655 55555999999999 8999999998888999987776
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-19 Score=159.63 Aligned_cols=284 Identities=18% Similarity=0.238 Sum_probs=187.2
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEec
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG 106 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~~ 106 (387)
+...+-..+.|+| -...++++...-.|+|||.+.++....+... ......|+.+.+-. |...+++|+
T Consensus 1062 ~n~~~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~----------~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNG----------AFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred cCCCCCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCC----------CCCCCccceeeeecccchhheeeec
Confidence 3445567788888 5667777776678999999988432222111 11223578888865 456899999
Q ss_pred CCCeEEEEEcCCCcC-ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 107 KDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
.||.|+||+--.... .... +.-|...+ ....+-.+.-.-+.|.... .+|
T Consensus 1131 ~dGvIRIwk~y~~~~~~~eL-------------------------VTaw~~Ls----~~~~~~r~~~~v~dWqQ~~-G~L 1180 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPEL-------------------------VTAWSSLS----DQLPGARGTGLVVDWQQQS-GHL 1180 (1387)
T ss_pred cCceEEEecccccccCCcee-------------------------EEeecccc----ccCccCCCCCeeeehhhhC-CeE
Confidence 999999997432110 0000 00000000 0001111111446787766 456
Q ss_pred EEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
++++.-..|+|||..... .... ..+....|+++.-+-..++.+++|..||.|++||.|.... ...+...+.|+.
T Consensus 1181 l~tGd~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1181 LVTGDVRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHND 1255 (1387)
T ss_pred EecCCeeEEEEEecccce--eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCC
Confidence 666668899999998766 2333 2345567788876654689999999999999999998543 346777888887
Q ss_pred e--EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---CCeeEEEEccCCCeEEEE
Q 016547 265 A--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---DKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 265 ~--i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~s 339 (387)
. |..+.+.+.|-.-+++|+.||.|++||++..... .......|. +.++++..+++.+.++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------------~~~~iv~~~~yGs~lTal~VH~hapiiA-- 1320 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------------TFLTIVAHWEYGSALTALTVHEHAPIIA-- 1320 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCccc-------------ccceeeeccccCccceeeeeccCCCeee--
Confidence 7 9999998876543679999999999999984111 111222232 2589999999888666
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc-------CceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-------KAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~f~P 387 (387)
+|+. +.|+||++. |+.+..+..+ .+.+.+++|||
T Consensus 1321 ------sGs~-q~ikIy~~~-------G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1321 ------SGSA-QLIKIYSLS-------GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred ------ecCc-ceEEEEecC-------hhhhcccccCcccccCcCCCcceeeecc
Confidence 7777 999999998 5554444322 34679999998
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=144.39 Aligned_cols=184 Identities=17% Similarity=0.249 Sum_probs=142.0
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
+...+.+|.+ .|+++.|+.++++|++|+.|..+++|+++.......
T Consensus 48 ~qKD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------------------------- 93 (609)
T KOG4227|consen 48 CQKDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------------------------- 93 (609)
T ss_pred hhhhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC---------------------------------
Confidence 3445788998 899999999999999999999999999986433222
Q ss_pred CCCCceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 158 SVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 158 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
.+++.... .|...|.|++|...+ .++.+|..+++|.+.|+++.+...+.......+.|+.+..+| ..+.|++.+.+
T Consensus 94 -~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~ 170 (609)
T KOG4227|consen 94 -PKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRA 170 (609)
T ss_pred -CCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecC
Confidence 23333333 456899999998876 889999999999999999988322222223345899999999 78999999999
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 301 (387)
+.|.+||.+..++. +.++. ..........+.|+|..+.|+++.+..+.+-+||++....++.
T Consensus 171 ~~V~~~D~Rd~~~~--~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~ 232 (609)
T KOG4227|consen 171 KLVSFIDNRDRQNP--ISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY 232 (609)
T ss_pred ceEEEEeccCCCCC--Cceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH
Confidence 99999999974321 22222 2223456788999999998999999999999999998766543
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=154.77 Aligned_cols=235 Identities=17% Similarity=0.264 Sum_probs=169.7
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
....+.||++ .|+|+.|+.+|.+|++|+.|-.+.|||.-..+..
T Consensus 42 lE~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll----------------------------------- 85 (758)
T KOG1310|consen 42 LEAELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL----------------------------------- 85 (758)
T ss_pred hhhhhccccc-eecceeecCCCCEEeecCCcceEEeecchhccee-----------------------------------
Confidence 3456899998 8999999999999999999999999998643221
Q ss_pred CCCCceeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCC--------CceeEEeeccCCCeeEEEecCCCCC
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGT--------SPVIKVEKAHDADLHCVDWNPLDDN 228 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (387)
...-.+|...|.++.|.|. ++.++++|..|..|+++|+...+ ......+..|...|..|+..|...+
T Consensus 86 ----hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph 161 (758)
T KOG1310|consen 86 ----HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH 161 (758)
T ss_pred ----eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc
Confidence 1233589999999999985 34688999999999999998522 1234456678899999999995559
Q ss_pred eEEEeeCCCeEEEEEeccCCCCCCCC----ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547 229 LILTGSADNSVRMFDRRNLTSNGVGS----PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 229 ~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 304 (387)
.+.+++.||+|+-+|++.+....... .+..+...--...++.++|..+++||.|+.|-..++||.+...++.....
T Consensus 162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~ 241 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG 241 (758)
T ss_pred eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence 99999999999999999854321111 11111112235679999999999999999999999999765433322222
Q ss_pred CCCCCCc---eeeeee-ccCC-----------CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 305 RTTNYPA---GLFFQH-AGHR-----------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 305 ~~~~~~~---~~~~~~-~~~~-----------~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.....++ .++..+ .+|. ..++-++|+|+|.-|+++.+.+ .|+++|+..
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE--------hVYlfdvn~ 304 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE--------HVYLFDVNE 304 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe--------EEEEEeecC
Confidence 1111111 111111 1221 1257788999999999988776 899999984
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=7.1e-20 Score=154.09 Aligned_cols=234 Identities=19% Similarity=0.314 Sum_probs=172.7
Q ss_pred eeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCc
Q 016547 10 LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89 (387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 89 (387)
++++++..+.|..-. -.+-....|+.+.|.|.+...||.+++||.|++|.+..+-.. .....+...+.+|.+ .
T Consensus 607 i~el~~PGrLPDgv~-p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~-----e~~~tPe~~lt~h~e-K 679 (1012)
T KOG1445|consen 607 IYELNEPGRLPDGVM-PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP-----ENEMTPEKILTIHGE-K 679 (1012)
T ss_pred EEEcCCCCCCCcccc-cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC-----cccCCcceeeecccc-e
Confidence 445566666555422 223467789999999999999999999999999999876322 123367788999998 6
Q ss_pred eEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 90 EFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 90 v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
|+++.|+|- ...|++++.|-+|++||+.+... ...+.+|
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----------------------------------------~~~l~gH 719 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKL----------------------------------------YSRLVGH 719 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhh----------------------------------------hheeccC
Confidence 999999994 56889999999999999986432 3567899
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----CeEEEEEe
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDR 244 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d~ 244 (387)
++.|.+++|+|+| +.+++.+.||+|++|+.++.+.+...-...-...--.|.|.- +++++++.+.| +.|.+||.
T Consensus 720 tdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred cCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhh
Confidence 9999999999999 889999999999999999888543332222223334566766 88888887765 46889988
Q ss_pred ccCCCCCCCCceEEecccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 245 RNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.+.. ..++.+..-.. -.+.--.+.+|...+|++|-.|..|.+|.+-..
T Consensus 798 q~l~----~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 798 QTLD----LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred hhcc----CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 8743 34443332111 112222456677778999999999999998763
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=1.1e-17 Score=142.04 Aligned_cols=266 Identities=9% Similarity=0.132 Sum_probs=168.8
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEe-cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
++..+.+.+.+....++++| ++++|+++ ..++.|.+|+++..... ....... ..+ ....++++|+++
T Consensus 25 l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l---------~~~~~~~-~~~-~p~~i~~~~~g~ 92 (330)
T PRK11028 25 LTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL---------TFAAESP-LPG-SPTHISTDHQGR 92 (330)
T ss_pred eeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce---------EEeeeec-CCC-CceEEEECCCCC
Confidence 33445556667788999999 77776554 56889999999732000 0111111 112 245899999999
Q ss_pred EEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 101 YVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 101 ~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+|++++. ++.|.+|++++..... .....+. +.....+++++|
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~------------------------------------~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPV------------------------------------APIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCC------------------------------------Cceeecc-CCCcccEeEeCC
Confidence 9887764 8899999996321100 0001111 123456788999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCce-----eEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCC
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~ 253 (387)
++..++++...++.|.+||+.+..... .... ........+.|+| ++++++++.. ++.|.+||+..... ..
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~--~~ 211 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHG--EI 211 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCC--CE
Confidence 995555677778999999997632110 0111 1234567899999 9999888876 89999999974210 02
Q ss_pred CceEEeccc------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 254 SPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 254 ~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
+.+..+..+ ......+.++|++++++++...++.|.+|++....... ........ ......+
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~-~~~p~~~ 279 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPT-ETQPRGF 279 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEec-cccCCce
Confidence 233333221 12234689999999887665668999999997543211 11111111 1245678
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.|+|+|++|+++... +++|.+|+++
T Consensus 280 ~~~~dg~~l~va~~~-------~~~v~v~~~~ 304 (330)
T PRK11028 280 NIDHSGKYLIAAGQK-------SHHISVYEID 304 (330)
T ss_pred EECCCCCEEEEEEcc-------CCcEEEEEEc
Confidence 999999999975543 4999999986
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=1.2e-19 Score=158.36 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=156.5
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCc
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPAT 129 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~ 129 (387)
+..|.+||.+.. . ...+..|.. .+....|+|||+.|+.++.+ ..|.+||+.++...
T Consensus 183 ~~~i~i~d~dg~------------~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------- 241 (429)
T PRK01742 183 PYEVRVADYDGF------------N-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------- 241 (429)
T ss_pred eEEEEEECCCCC------------C-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------
Confidence 468999998765 2 344556665 68899999999999987643 46999998754211
Q ss_pred ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEE--EccCCCCcee
Q 016547 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW--DARVGTSPVI 207 (387)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~ 207 (387)
.+..+.+| ...++|+|+|..++++.+.+|.+.|| |+.+++ .
T Consensus 242 -------------------------------~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~ 284 (429)
T PRK01742 242 -------------------------------VVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---P 284 (429)
T ss_pred -------------------------------EEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---e
Confidence 01112222 34689999994444445578876665 555544 3
Q ss_pred EEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 208 KVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
..+..+...+....|+| +++.|+..+ .+|...+|++... +.....+ .+.. ....|+|+|++++ ..+.++
T Consensus 285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~-----~~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~ 354 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSAS-----GGGASLV-GGRG--YSAQISADGKTLV-MINGDN 354 (429)
T ss_pred EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECC-----CCCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC
Confidence 44555667788999999 888776555 5788999988752 2222222 3333 4678999999764 444454
Q ss_pred eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc
Q 016547 287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366 (387)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~ 366 (387)
+.+||+..+.... +. ..+ ....+.|+|++++++.+. .++.+.+|.+... .
T Consensus 355 -i~~~Dl~~g~~~~-------------lt--~~~--~~~~~~~sPdG~~i~~~s--------~~g~~~~l~~~~~----~ 404 (429)
T PRK01742 355 -VVKQDLTSGSTEV-------------LS--STF--LDESPSISPNGIMIIYSS--------TQGLGKVLQLVSA----D 404 (429)
T ss_pred -EEEEECCCCCeEE-------------ec--CCC--CCCCceECCCCCEEEEEE--------cCCCceEEEEEEC----C
Confidence 6669987743211 10 111 234678999999887433 3466777766421 4
Q ss_pred chhhhhhhccCceEEEeeecC
Q 016547 367 DEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 367 ~~~~~~~~~~~~~v~~~~f~P 387 (387)
+..+.++..|.+.+..++|||
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceEEccCCCCCCCCcccCC
Confidence 778888888989999999998
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.6e-20 Score=153.16 Aligned_cols=231 Identities=20% Similarity=0.349 Sum_probs=169.5
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECC--CCCE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCP--TEPY 101 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~--~~~~ 101 (387)
..+.||.|.|+|++|+. +|.+|++|++|-.+.|||.-.. ++++. -.+|.. -|.++.|-| +.+.
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~------------KllhsI~TgHta-NIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEY------------KLLHSISTGHTA-NIFSVKFVPYTNNRI 109 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhc------------ceeeeeeccccc-ceeEEeeeccCCCeE
Confidence 35568999999999999 9999999999999999998866 44444 467887 589999998 4568
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++|+.|..|+++|+........ +-....+...+..|...|..++..|++
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~------------------------------d~~~~~~~~~~~cht~rVKria~~p~~ 159 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGM------------------------------DHGMEETTRCWSCHTDRVKRIATAPNG 159 (758)
T ss_pred EEeccCcceEEEEeccccccccc------------------------------ccCccchhhhhhhhhhhhhheecCCCC
Confidence 89999999999999975321100 111223446677899999999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCC--c------eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC---
Q 016547 182 AQEFCSVGDDSCLILWDARVGTS--P------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--- 250 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~--~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--- 250 (387)
++.|.++++||+|+-+|++.... + ........--...++.++|.+..+|++|+.|-..++||.+.....
T Consensus 160 PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s 239 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRS 239 (758)
T ss_pred CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCC
Confidence 99999999999999999997431 0 001111122356789999988999999999999999995532110
Q ss_pred ---------CCCCceEEec-ccc-----------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee
Q 016547 251 ---------GVGSPINKFE-GHS-----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 300 (387)
Q Consensus 251 ---------~~~~~~~~~~-~~~-----------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~ 300 (387)
....++..+. +|- ..++-++|+|+|..||++-+ ...|+++|+.....+.
T Consensus 240 ~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 240 DGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSPT 309 (758)
T ss_pred CccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCce
Confidence 0011233221 111 12567899999999887766 4479999998854443
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.2e-19 Score=144.46 Aligned_cols=258 Identities=21% Similarity=0.319 Sum_probs=181.6
Q ss_pred EeccCCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 160 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (387)
..-|...+|..+.|.++.. .|+||+.|..|++|.++....... ....+
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------------------------~~~V~ 56 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------------------------DMKVE 56 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------------------------ceeEE
Confidence 3334445799999999876 999999999999999875321110 01233
Q ss_pred CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEcc--------C------CCCceeEEeeccCCCeeEEEecCCC
Q 016547 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--------V------GTSPVIKVEKAHDADLHCVDWNPLD 226 (387)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (387)
....+..|...|+++.|+|+| .++++|+.+|.|.+|-.. + ..+...+...+|...|..++|+| +
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d 134 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-D 134 (434)
T ss_pred EeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-C
Confidence 446678899999999999999 899999999999999876 2 11234556678999999999999 9
Q ss_pred CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC--
Q 016547 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP-- 304 (387)
Q Consensus 227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-- 304 (387)
++++++++.|+.+++||+.. +.....+..|...+..++|.|-+++ +++-+.|...+.+++...........
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~ 207 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDI 207 (434)
T ss_pred CceeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeE
Confidence 99999999999999999999 9999999999999999999999997 46888888777776654221111100
Q ss_pred ---CCCCCCceeeeeeccCC----CCeeEEEEccCCCeEEEEec-CCCCCCCC--CceEEEEecCCCcccccchhhhhhh
Q 016547 305 ---RTTNYPAGLFFQHAGHR----DKVVDFHWNASDPWTVVSVS-DDCDSTGG--GGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 305 ---~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~s~s-~d~~tg~~--dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
............+ -|. .-...++|+|+|..++.-++ -+ +|+. =++.++|+-.. ...+...+.
T Consensus 208 m~~~~~~~~e~~s~rL-fhDeTlksFFrRlsfTPdG~llvtPag~~~--~g~~~~~n~tYvfsrk~-----l~rP~~~lp 279 (434)
T KOG1009|consen 208 MPAKAFNEREGKSTRL-FHDETLKSFFRRLSFTPDGSLLVTPAGLFK--VGGGVFRNTSYVFSRKD-----LKRPAARLP 279 (434)
T ss_pred eeecccCCCCcceeee-eecCchhhhhhhcccCCCCcEEEcccceee--eCCceeeceeEeecccc-----ccCceeecC
Confidence 0000000111111 122 23567889999987663211 11 1111 13445565553 456777788
Q ss_pred ccCceEEEeeecC
Q 016547 375 KFKAHVISCTSKP 387 (387)
Q Consensus 375 ~~~~~v~~~~f~P 387 (387)
....++..+.|+|
T Consensus 280 ~~~k~~lavr~~p 292 (434)
T KOG1009|consen 280 SPKKPALAVRFSP 292 (434)
T ss_pred CCCcceEEEEeee
Confidence 8888888888887
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.7e-18 Score=150.92 Aligned_cols=266 Identities=16% Similarity=0.230 Sum_probs=182.7
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
..|.-.++|.+++| +++++|+|..||.|.+|.--..+. .......+.-|.+ .|+++.|+++|.+|++|+.
T Consensus 202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~--------~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSD--------DSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hhhcccceeEEecc-ccceEEEeccCCcEEEEecccccc--------ccccceEEEeccc-ccceeEEecCCceEeeccc
Confidence 35777899999999 999999999999999997544211 1134456777877 6999999999999999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
.|.+.+|.+.++.. +-+..-.++|..+.++||+ .+.+.
T Consensus 272 E~VLv~Wq~~T~~k-----------------------------------------qfLPRLgs~I~~i~vS~ds-~~~sl 309 (792)
T KOG1963|consen 272 EGVLVLWQLETGKK-----------------------------------------QFLPRLGSPILHIVVSPDS-DLYSL 309 (792)
T ss_pred ceEEEEEeecCCCc-----------------------------------------ccccccCCeeEEEEEcCCC-CeEEE
Confidence 99999999987542 3344456889999999999 67777
Q ss_pred ecCCCeEEEEEccCCCCc-eeEEe--------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC-------
Q 016547 188 VGDDSCLILWDARVGTSP-VIKVE--------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG------- 251 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~-~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------- 251 (387)
...|+.|.+....+.+.. .+..+ ....+-.+.++++| ..+.++-.+..|.|.+||+.+.....
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 888999999887554310 11111 11234467788888 77888888888999999876521000
Q ss_pred ---CC-----------------------------------Cce----------------E-EeccccceEEEEEEcCC-C
Q 016547 252 ---VG-----------------------------------SPI----------------N-KFEGHSAAVLCVQWSPD-K 275 (387)
Q Consensus 252 ---~~-----------------------------------~~~----------------~-~~~~~~~~i~~~~~~~~-~ 275 (387)
.+ +.. . ....|+..+...++.+. .
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 00 000 0 01135544444444433 2
Q ss_pred CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547 276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 355 (387)
Q Consensus 276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i 355 (387)
...+++++.||.++||-+.......... ..+.+.....-|..++++++|+.||..|+ .+.|++|.+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~-----s~W~c~~i~sy~k~~i~a~~fs~dGslla---------~s~~~~Iti 534 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKS-----SNWTCKAIGSYHKTPITALCFSQDGSLLA---------VSFDDTITI 534 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCc-----cceEEeeeeccccCcccchhhcCCCcEEE---------EecCCEEEE
Confidence 2256799999999999996543322111 12233443344889999999999996443 345589999
Q ss_pred EecCC
Q 016547 356 WRMSD 360 (387)
Q Consensus 356 w~~~~ 360 (387)
||...
T Consensus 535 wd~~~ 539 (792)
T KOG1963|consen 535 WDYDT 539 (792)
T ss_pred ecCCC
Confidence 99985
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-18 Score=156.92 Aligned_cols=285 Identities=14% Similarity=0.173 Sum_probs=184.8
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
...++..|...|..++.+++.+.+++||+.||+|++||........ ...+...++.- .++.+.++...+.++.+
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~-~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSP-EGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEec-cCCceEEEEeccCCCeE
Confidence 3456667999999999999777999999999999999987653221 11122222322 44578999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCe-EEEEEccC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTV-EDVTFCPS 180 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~~~~ 180 (387)
|.++.||.|++.+++........ .........+ .+.+ ..-++...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~---------------------------------~~~~ri~n~~~~g~vv~m~a~~~~ 1160 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRV---------------------------------ATQVRIPNLKKDGVVVSMHAFTAI 1160 (1431)
T ss_pred EEEcCCCeEEEEEccccccccce---------------------------------eeeeecccccCCCceEEeeccccc
Confidence 99999999999999753110000 0000111111 1222 23333332
Q ss_pred CC-eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 181 SA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 181 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
.. ..++.+..-+.|..||+++....-........+.|++++.+| .+++++.|+..|.+.+||+|- ..++.++
T Consensus 1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw 1233 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSW 1233 (1431)
T ss_pred ccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------Cceeecc
Confidence 22 367888889999999999876322233344567899999999 899999999999999999997 7777777
Q ss_pred c-cccceEEEEEEcCCCC---eeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeee----eeccCCCCeeEEEEc
Q 016547 260 E-GHSAAVLCVQWSPDKS---SVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF----QHAGHRDKVVDFHWN 330 (387)
Q Consensus 260 ~-~~~~~i~~~~~~~~~~---~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~ 330 (387)
+ ++..+|..+..+|-.+ ..+.+++ ..+.|.+|++.++................... ....+.-......+.
T Consensus 1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 5 3457788888877533 3444444 57889999999875543332221100000000 000122223333444
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
..+..++ +||.|..|+.||...+
T Consensus 1314 ~~~~~~l--------tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1314 EKNGFLL--------TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cCCceee--------ecCCccceeeccCCCc
Confidence 4456666 8899999999998743
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=6.8e-19 Score=136.10 Aligned_cols=222 Identities=16% Similarity=0.227 Sum_probs=170.2
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
+|+|.+|++|++.++.+-....|.||...... -.++..++..|
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htls~H 54 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTLSEH 54 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceehhhh
Confidence 79999999999999999999999999987432 24556788899
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEc-cCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDA-RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
...|+++.|+|.. +.+++|+.|..-++|.. ..++......+..+....+++.|+| .++.||+|+....|.+|-++..
T Consensus 55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred CcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecc
Confidence 9999999999998 78999999999999998 5555445556677899999999999 9999999999999999877752
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC--ceeccCCCCCCCCc-eeeeeeccCCCCe
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG--KKVEQGPRTTNYPA-GLFFQHAGHRDKV 324 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~v 324 (387)
.. .....+.-+.+.+.|++++|+|++- ++++|+.|+..+||..--.. ++....+.....|. .++..+....+.+
T Consensus 133 Nd--WWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 133 ND--WWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV 209 (361)
T ss_pred cc--eehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence 11 1122223345678899999999987 68899999999999864311 11111122222222 2333444567899
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
..+.|+|+|..|+ =.+.|.++.+=|...
T Consensus 210 h~v~fs~sG~~la--------wv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 210 HGVLFSPSGNRLA--------WVGHDSTVSFVDAAG 237 (361)
T ss_pred eeeEeCCCCCEee--------EecCCCceEEeecCC
Confidence 9999999999887 556678999988874
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=1.1e-18 Score=135.07 Aligned_cols=217 Identities=14% Similarity=0.221 Sum_probs=175.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-..+|+|.+|++ ++..+|.+.....|.||...... ..++.+++..|.. .|++++|+|..+.|++|+.|.
T Consensus 9 ~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~---------~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~dr 77 (361)
T KOG1523|consen 9 LLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGAD---------LWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDR 77 (361)
T ss_pred ccCceeeeeecC-CCceEEeccCCceEEEEEecCCC---------CceeceehhhhCc-ceeEEeecCCCCceeEccCCC
Confidence 467899999999 88999999999999999987761 2467889999998 799999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.-.+|.... ....++...+..+....+++.|+|.+ +.|++|+
T Consensus 78 nayVw~~~~-------------------------------------~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgS 119 (361)
T KOG1523|consen 78 NAYVWTQPS-------------------------------------GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGS 119 (361)
T ss_pred CccccccCC-------------------------------------CCeeccceeEEEeccceeeEeecCcC-ceEEecc
Confidence 999998742 23455667778889999999999998 8999999
Q ss_pred CCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC------------CCCCCCc
Q 016547 190 DDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT------------SNGVGSP 255 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------~~~~~~~ 255 (387)
.-..|.+|-.+..+. ........+.+.|++++|+| ++-+|++|+.|+..|+|...-.. +.+.+..
T Consensus 120 gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l 198 (361)
T KOG1523|consen 120 GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL 198 (361)
T ss_pred CccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence 999999998876551 11223446778899999999 99999999999999999754210 1112444
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+.++..-.+.+..+.|+|+|.. |+=.+.|+.+.+-|.....
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGNR-LAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHhhccCCCceeeeEeCCCCCE-eeEecCCCceEEeecCCCc
Confidence 5555556788999999999996 5677889999999987754
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=141.04 Aligned_cols=196 Identities=21% Similarity=0.324 Sum_probs=150.2
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
..+|++-..|+|++||..+++ .+..+.++...++.+.|..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~----------------------------------------~l~~fk~~~~~~N~vrf~~ 80 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ----------------------------------------LLEEFKGPPATTNGVRFIS 80 (376)
T ss_pred eeEEEEecCCeEEEEeccchh----------------------------------------hhheecCCCCcccceEEec
Confidence 457777789999999997643 3366777888888888876
Q ss_pred C-CCeeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeC----CCeEEEEEeccCCCCCCC
Q 016547 180 S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 180 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~ 253 (387)
. ++..+.+|+.||+|++||++............+. .+..+++..- .++.+++|.. +-.|.+||.|.. .
T Consensus 81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~-----q 154 (376)
T KOG1188|consen 81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSE-----Q 154 (376)
T ss_pred CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccc-----c
Confidence 4 5578999999999999999987755555565555 5677887776 6788888764 568999999983 2
Q ss_pred CceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 254 SPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 254 ~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
+++..+ ..|...|+++.|+|+.+.+|++|+.||.|.|||+....+. ..+.....|...|..+.|..+
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------------DaL~~viN~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------------DALLHVINHGSSIHLIGWLSK 222 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch------------hhHHHhhcccceeeeeeeecC
Confidence 324444 6799999999999999999999999999999999875332 123334457778999999987
Q ss_pred C-CeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 333 D-PWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 333 ~-~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
+ +.+. +-+...+..+|++++.
T Consensus 223 ~ykrI~--------clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 223 KYKRIM--------CLTHMETFAIYELEDG 244 (376)
T ss_pred CcceEE--------EEEccCceeEEEccCC
Confidence 7 2333 3345589999999853
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.9e-17 Score=143.13 Aligned_cols=251 Identities=27% Similarity=0.526 Sum_probs=187.8
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
........|...|.+++|+| ++..+++++. |+.+++|+.... .....+.+|.. .|.+++|+|++.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~ 211 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTG------------KPLSTLAGHTD-PVSSLAFSPDGG 211 (466)
T ss_pred eEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCC------------ceEEeeccCCC-ceEEEEEcCCcc
Confidence 34456678999999999999 7778888875 999999999986 66777888887 799999999998
Q ss_pred -EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce-eecCCCCCeEEEEEc
Q 016547 101 -YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-IYNGHEDTVEDVTFC 178 (387)
Q Consensus 101 -~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 178 (387)
.+++++.|+.|++||...+.. .. .+..|.... ...|+
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~----------------------------------------~~~~~~~~~~~~-~~~~~ 250 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKL----------------------------------------LRSTLSGHSDSV-VSSFS 250 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcE----------------------------------------EeeecCCCCcce-eEeEC
Confidence 556669999999997763221 12 456666664 33899
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
|++ ..+++++.|+.+++|+++.... .......|...+.++.|.| ++..+++++.|+.+.+||... ......
T Consensus 251 ~~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~------~~~~~~ 321 (466)
T COG2319 251 PDG-SLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET------GKLLSS 321 (466)
T ss_pred CCC-CEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCC------CceEEE
Confidence 998 7888999999999999987764 2333367889999999999 888888899999999998887 554555
Q ss_pred ec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547 259 FE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 336 (387)
Q Consensus 259 ~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (387)
.. .|...+..+.|.+++..+..++..|+.+.+|++.... . ....... ..+..+.+.+ . ..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~--------------~~~~~~~-~~~~~~~~~~-~-~~ 383 (466)
T COG2319 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P--------------LKTLEGH-SNVLSVSFSP-D-GR 383 (466)
T ss_pred eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-e--------------eEEecCC-ceEEEEEECC-C-CC
Confidence 44 7777899999943324455444678999999998853 1 1111111 1288899998 6 44
Q ss_pred EEEecCCCCCCCCCceEEEEecCC
Q 016547 337 VVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 337 ~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
..+ .+..++.+.+|+...
T Consensus 384 ~~~------~~~~~~~~~~~~~~~ 401 (466)
T COG2319 384 VVS------SGSTDGTVRLWDLST 401 (466)
T ss_pred EEE------EecCCCceEEEeccc
Confidence 432 245669999999993
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.7e-19 Score=143.34 Aligned_cols=200 Identities=16% Similarity=0.212 Sum_probs=147.4
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEE
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 114 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vw 114 (387)
.+++|+. ++..|++|+.||++|||++... ..+.....|.. .|.++.|+|||++|++-+.| ..+||
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~------------~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSM------------LTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcc------------hhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEE
Confidence 7889888 8899999999999999998877 55556667776 69999999999999999999 99999
Q ss_pred EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC---C-eeEEEecC
Q 016547 115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS---A-QEFCSVGD 190 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~~l~~~~~ 190 (387)
+++++.......+ .........+.|+.++ . .+++....
T Consensus 213 ~~~~g~~~a~~t~--------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 213 SVNTGAALARKTP--------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred EeccCchhhhcCC--------------------------------------cccchhhhhceecccCCCceEEEEEecCC
Confidence 9998733322211 1222334455565443 1 12233344
Q ss_pred CCeEEEEEccCCCCc---eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceE
Q 016547 191 DSCLILWDARVGTSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAV 266 (387)
Q Consensus 191 dg~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i 266 (387)
.+.|+.||+...... ...........|.++++++ +|++++.|+.||.|.+++..+ .+.++ .-+.|...|
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~------lq~~~~vk~aH~~~V 327 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKS------LQRLQYVKEAHLGFV 327 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEece------eeeeEeehhhheeee
Confidence 566777776554321 1122223345799999999 999999999999999999998 44443 446899999
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+.+.|+|+.+++ ++.+.|..+.|..+..
T Consensus 328 T~ltF~Pdsr~~-~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 328 TGLTFSPDSRYL-ASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCcCcc-cccccCCceeEEEEee
Confidence 999999999974 5788888888888765
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=128.87 Aligned_cols=231 Identities=20% Similarity=0.299 Sum_probs=154.3
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.|.+-+|+|.+++|+.|..+|.|.+..++....... ..+...++...++|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------------------~~~gk~~iv~eqah 61 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------------------EPPGKLKIVPEQAH 61 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------------------CCCCCcceeecccc
Confidence 366778999999999999999999999875322111 11122334555899
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-----ceeE-Eeecc-----CCCeeEEEecCCCCCeEEEeeCCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIK-VEKAH-----DADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~-~~~~~-----~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
.++|..++|.. .+|++|+ ||.|+-|.-+.... +... ..+.| --.|++|...| ..+-++.++.|+
T Consensus 62 dgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~ 136 (325)
T KOG0649|consen 62 DGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDG 136 (325)
T ss_pred CCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCe
Confidence 99999999983 4677776 49999997654331 0111 11112 23688999999 666666666999
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
.++-||+++ ++..+++++|...|.+++-......+| +|++||++|+||.++.+......+... ...+
T Consensus 137 ~~y~~dlE~------G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~------~~~l 203 (325)
T KOG0649|consen 137 VIYQVDLED------GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKN------PNLL 203 (325)
T ss_pred EEEEEEecC------CEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeEEeccccC------hhhc
Confidence 999999999 999999999999999999844444455 999999999999998654332221110 1112
Q ss_pred ccCC-CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 318 AGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 318 ~~~~-~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
..|. .+|-+++-+ ..+|+ ||..-.+.+|+++ ..++...+. ..++|..|.|
T Consensus 204 Rp~~g~wigala~~--edWlv---------CGgGp~lslwhLr------sse~t~vfp-ipa~v~~v~F 254 (325)
T KOG0649|consen 204 RPDWGKWIGALAVN--EDWLV---------CGGGPKLSLWHLR------SSESTCVFP-IPARVHLVDF 254 (325)
T ss_pred CcccCceeEEEecc--CceEE---------ecCCCceeEEecc------CCCceEEEe-cccceeEeee
Confidence 2232 356666654 44665 3334689999999 555544443 2333433333
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=143.00 Aligned_cols=232 Identities=16% Similarity=0.255 Sum_probs=155.8
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
.|...|.|+.|+. +...+.+++++-.+.-||+.+.+.......+....+ ..|..+ .+..=-.....++.++.|
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt----~~h~~~--rs~~~g~~~d~~~i~s~D 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPT----DMHLGG--RSSGGGKGSDTLLICSND 84 (737)
T ss_pred ccceeEEeecccc-cceEEEeccCceEEEeecccchhhhhhhCCcccCCc----cccccc--cccCCCCCcceEEEEcCC
Confidence 5777788999998 667776666555555555554421111000000000 001110 000001123467888889
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.+.+.+-... .......|.+.+.+-.|+|+| .-|+++
T Consensus 85 Gkf~il~k~~r-----------------------------------------VE~sv~AH~~A~~~gRW~~dG-tgLlt~ 122 (737)
T KOG1524|consen 85 GRFVILNKSAR-----------------------------------------VERSISAHAAAISSGRWSPDG-AGLLTA 122 (737)
T ss_pred ceEEEecccch-----------------------------------------hhhhhhhhhhhhhhcccCCCC-ceeeee
Confidence 99988764321 224567899999999999999 779999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
++||.|++|.-...- ...+.....+|+|++|.|+..+.+.+. .+.+.+=.+.. ...+...++|++-|.+
T Consensus 123 GEDG~iKiWSrsGML---RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~------n~k~i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 123 GEDGVIKIWSRSGML---RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAA------NSKIIRWRAHDGLVLS 191 (737)
T ss_pred cCCceEEEEeccchH---HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccc------ccceeEEeccCcEEEE
Confidence 999999999854332 233445677999999999444555443 34565555555 5677788999999999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
+.|++.+. ++++|++|-+.+|||-.. ..++....|+.+|++++|+|+..+++
T Consensus 192 ~~W~~~s~-lI~sgGED~kfKvWD~~G----------------~~Lf~S~~~ey~ITSva~npd~~~~v 243 (737)
T KOG1524|consen 192 LSWSTQSN-IIASGGEDFRFKIWDAQG----------------ANLFTSAAEEYAITSVAFNPEKDYLL 243 (737)
T ss_pred eecCcccc-ceeecCCceeEEeecccC----------------cccccCChhccceeeeeeccccceee
Confidence 99999988 678999999999999775 24566678889999999999844433
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3e-18 Score=141.56 Aligned_cols=209 Identities=16% Similarity=0.290 Sum_probs=160.8
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 123 (387)
.+.++.++.||.+.|.+-.. +.......|.+ ++.+-.|+|||.-|++++.||.|++|.-...
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-------------rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---- 136 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-------------RVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---- 136 (737)
T ss_pred cceEEEEcCCceEEEecccc-------------hhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccch----
Confidence 35778889999999887433 34556788887 7899999999999999999999999985421
Q ss_pred ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547 124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 203 (387)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 203 (387)
...++.....+|.|++|.|+.+..+.+.+ +.+.+=.+....
T Consensus 137 -------------------------------------LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~ 177 (737)
T KOG1524|consen 137 -------------------------------------LRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS 177 (737)
T ss_pred -------------------------------------HHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc
Confidence 11233445678999999999866666654 556665555544
Q ss_pred CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec
Q 016547 204 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~ 283 (387)
.......|.+-|.++.|++ ..+++++|+.|-..++||.. +.++..-..|+.+|++++|+|+ . +++.++
T Consensus 178 --k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S 245 (737)
T KOG1524|consen 178 --KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPE-K-DYLLWS 245 (737)
T ss_pred --ceeEEeccCcEEEEeecCc-cccceeecCCceeEEeeccc-------CcccccCChhccceeeeeeccc-c-ceeeee
Confidence 3556789999999999999 99999999999999999988 7888888889999999999999 3 566666
Q ss_pred CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
. .+++ ++ ....+.|..++|++||..+. .|...|.+.+=
T Consensus 246 ~-nt~R---~~-----------------------~p~~GSifnlsWS~DGTQ~a--------~gt~~G~v~~A 283 (737)
T KOG1524|consen 246 Y-NTAR---FS-----------------------SPRVGSIFNLSWSADGTQAT--------CGTSTGQLIVA 283 (737)
T ss_pred e-eeee---ec-----------------------CCCccceEEEEEcCCCceee--------ccccCceEEEe
Confidence 3 3444 11 22346899999999999887 44445655543
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.4e-18 Score=142.79 Aligned_cols=225 Identities=18% Similarity=0.202 Sum_probs=157.0
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
......+.+|.++|.|+++.+ ++..+.+|+-||+|+.|++... ...............+.||++ .|+.+++++...
T Consensus 334 ~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n--~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~ 409 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPN--QDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKD 409 (577)
T ss_pred eeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCC--CCcccccCcchhccceecccc-ceeeeeeccccc
Confidence 344567778999999999888 9999999999999999987622 221111222245567899998 799999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.|++|+.||+++.|+........ +. .-.. .+.-..+.+-..
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~~~-f~-------------------------------------~~~e-~g~Plsvd~~ss 450 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESPCT-FG-------------------------------------EPKE-HGYPLSVDRTSS 450 (577)
T ss_pred ceeeecCCceEEeeccCCcCccc-cC-------------------------------------Cccc-cCCcceEeeccc
Confidence 99999999999999986532200 00 0001 112233444322
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
...+.++...-+.--++++.......+... ......+..+.++| ...+.+++..|+.|+++|..+ +.+
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~------~~~ 523 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT------GKI 523 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc------ccc
Confidence 212222222333333444433331111111 11123467788899 889999999999999999999 999
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+.+..+|...++++++.|+|.+ |++++.|+.+++|.+...
T Consensus 524 l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeeccceecceeecCCCce-EEeecCCceeehhhccch
Confidence 9999999999999999999997 569999999999999763
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=9.1e-17 Score=140.02 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=154.3
Q ss_pred cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec---CCCeEEEEEcCCCcCccccCCCccc
Q 016547 55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG---KDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
.|.+||.+.. ... .+..+.. .+....|+|||+.|+..+ .+..|.+|++.++..
T Consensus 180 ~l~~~d~dg~------------~~~-~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~---------- 235 (429)
T PRK03629 180 ELRVSDYDGY------------NQF-VVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---------- 235 (429)
T ss_pred eEEEEcCCCC------------CCE-EeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe----------
Confidence 6888888766 222 2333443 578999999999988654 245788999875421
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeEE
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV 209 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 209 (387)
..+....+.+..+.|+|||..++++.+.+| .|.+||+.+++ ...
T Consensus 236 -------------------------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~ 281 (429)
T PRK03629 236 -------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQ 281 (429)
T ss_pred -------------------------------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEE
Confidence 111112223446799999955555555555 58889998776 333
Q ss_pred eeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC--C
Q 016547 210 EKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--G 286 (387)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~ 286 (387)
+..+...+....|+| +++.|+..+.+ +...+|.+... +.....+...........|+|+|++++.++..+ .
T Consensus 282 lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~-----~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 282 VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNIN-----GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECC-----CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 444455678899999 89888776654 55556644321 222334433444566789999999876555444 3
Q ss_pred eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc
Q 016547 287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366 (387)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~ 366 (387)
.|.+||+...... .+... .......|+|||++++.++.+. ....+.+++++
T Consensus 356 ~I~~~dl~~g~~~----------------~Lt~~-~~~~~p~~SpDG~~i~~~s~~~-----~~~~l~~~~~~------- 406 (429)
T PRK03629 356 HIAKQDLATGGVQ----------------VLTDT-FLDETPSIAPNGTMVIYSSSQG-----MGSVLNLVSTD------- 406 (429)
T ss_pred eEEEEECCCCCeE----------------EeCCC-CCCCCceECCCCCEEEEEEcCC-----CceEEEEEECC-------
Confidence 5888888764221 11111 1234678999999888655421 12457888887
Q ss_pred chhhhhhhccCceEEEeeecC
Q 016547 367 DEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 367 ~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.....+.+|.+.+...+|+|
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCeEECccCCCCcCCcccCC
Confidence 555677778888999999998
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.3e-18 Score=149.51 Aligned_cols=259 Identities=12% Similarity=0.199 Sum_probs=173.5
Q ss_pred CCcEEEEEecC-CCCcEEEEecCCCcEEEEeccCCC-CcccccCCCCCCCeEEE-------eccCCCceEEEEECCCCCE
Q 016547 31 PGEVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQP-NRHAVLGATNSRPDLIL-------TGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 31 ~~~v~~i~~~~-~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~-------~~h~~~~v~~~~~~~~~~~ 101 (387)
...|+.+.+.. ++..++.+|+.||.|+||+-.... ... +.+..+ .+..+.. .-++|.....+
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~--------eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP--------ELVTAWSSLSDQLPGARGTG-LVVDWQQQSGH 1179 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCc--------eeEEeeccccccCccCCCCC-eeeehhhhCCe
Confidence 35678887765 466789999999999999754332 111 111111 1111211 35788877777
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
|++++.-..|+|||........... .+....|+++.-.-..
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~diP---------------------------------------~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIP---------------------------------------YGSSTLVTALSADLVH 1220 (1387)
T ss_pred EEecCCeeEEEEEecccceeEeecc---------------------------------------cCCCccceeecccccC
Confidence 7777778999999998654332211 1234456666655444
Q ss_pred CeeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCC--eeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 182 AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDAD--LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
++++++|..||.|++||.+.... ..+.....|... |..+.+.+..-..|++|+.||.|++||+|... ......
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~----~e~~~~ 1296 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS----KETFLT 1296 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc----ccccce
Confidence 48999999999999999987653 134556678777 99999988333469999999999999999842 222333
Q ss_pred ecccc---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 259 FEGHS---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 259 ~~~~~---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
+..|- +..+++..+++.+ ++|+|+. +.|+||++.......... .+..+ ....+.+.+++|+|..-.
T Consensus 1297 iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~------n~~F~---~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKY------NPGFM---GQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred eeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccccc------Ccccc---cCcCCCcceeeecchhHh
Confidence 33332 3589999999998 6888887 999999998632221110 00111 113346799999997655
Q ss_pred EEEEecCCCCCCCCCceEEEEecCC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
++ +|..|.+|.||....
T Consensus 1366 lA--------aG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1366 LA--------AGSADSTVSIYSCEK 1382 (1387)
T ss_pred hh--------hccCCceEEEeecCC
Confidence 54 677779999999873
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.4e-16 Score=125.81 Aligned_cols=237 Identities=11% Similarity=0.182 Sum_probs=161.5
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC--
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-- 108 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-- 108 (387)
...+..+.|.. +...|..|+.|| .++++.+.... ... ..-.+..|--+-|+ ..++|..+.+
T Consensus 5 ~~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k-----------~~~--~~~~~~~IvEmLFS--SSLvaiV~~~qp 67 (391)
T KOG2110|consen 5 KPTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEK-----------CFS--KDTEGVSIVEMLFS--SSLVAIVSIKQP 67 (391)
T ss_pred Ccceeeeeecc-ceeEEEccCCCc-eeEEecCchHH-----------hhc--ccCCCeEEEEeecc--cceeEEEecCCC
Confidence 34566677777 888999999998 67787766521 000 11111123344454 4455544433
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
+.+++.+++....... -....+|.++.++.+ .|+++
T Consensus 68 r~Lkv~~~Kk~~~ICe-----------------------------------------~~fpt~IL~VrmNr~---RLvV~ 103 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICE-----------------------------------------IFFPTSILAVRMNRK---RLVVC 103 (391)
T ss_pred ceEEEEEcccCceEEE-----------------------------------------EecCCceEEEEEccc---eEEEE
Confidence 4588888875432211 123467899998754 46665
Q ss_pred cCCCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 189 GDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
-.+. |+|||+++.+ .+..+. .+...+.++.+++ .+.+++--+ ..|.|.+||..+ .+++..+..|+
T Consensus 104 Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~ 173 (391)
T KOG2110|consen 104 LEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHK 173 (391)
T ss_pred Eccc-EEEEecccce--eehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc------ceeeeEEEecC
Confidence 5544 9999999987 344333 3455566666666 566777543 358999999999 89999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEccCCCeEEEEe
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~s~ 340 (387)
+++-+++|+++|. ++|++++.|+ ||||.+..+.+.. .++. -...|.+++|+|++++|.++
T Consensus 174 ~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~---------------eFRRG~~~~~IySL~Fs~ds~~L~~s- 236 (391)
T KOG2110|consen 174 GPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLY---------------EFRRGTYPVSIYSLSFSPDSQFLAAS- 236 (391)
T ss_pred CceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEee---------------eeeCCceeeEEEEEEECCCCCeEEEe-
Confidence 9999999999999 5799999887 8999998864432 2222 13478999999999988744
Q ss_pred cCCCCCCCCCceEEEEecCCCc
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
|..++|+||.+....
T Consensus 237 -------S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 -------SNTETVHIFKLEKVS 251 (391)
T ss_pred -------cCCCeEEEEEecccc
Confidence 334799999998543
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.1e-18 Score=136.11 Aligned_cols=202 Identities=16% Similarity=0.259 Sum_probs=146.9
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
.+++|+.+|..|++++.||++|+|+.... ..+.....|..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------------------~t~l~e~~~~~ 187 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------------------LTILEEIAHHA 187 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------------------hhhhhhHhhcC
Confidence 58999999999999999999999997532 22344567889
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC-----CeEEEeeCCCeEEEEEec
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-----NLILTGSADNSVRMFDRR 245 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~i~~~d~~ 245 (387)
.|.++.|+||+ .+|++.+.| ..++|+.+++.................+.|+. ++ .+++.-..-+.|+.||+.
T Consensus 188 eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 188 EVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred ccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEee
Confidence 99999999999 899999999 99999999985211111122334455667766 55 333333445678888877
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
........+....+. ....|++++.+++|++ +|.|+.||.|-|++..+... .......|...|+
T Consensus 265 ~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf-~AlGT~dGsVai~~~~~lq~--------------~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 265 LWSGSNFLRLRKKIK-RFKSISSLAVSDDGKF-LALGTMDGSVAIYDAKSLQR--------------LQYVKEAHLGFVT 328 (398)
T ss_pred eeccccccchhhhhh-ccCcceeEEEcCCCcE-EEEeccCCcEEEEEeceeee--------------eEeehhhheeeee
Confidence 633211111111222 2347999999999995 68999999999999987532 2344567999999
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+.|+|+.+++. +-+.|....|..+.
T Consensus 329 ~ltF~Pdsr~~~--------svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 329 GLTFSPDSRYLA--------SVSSDNEAAVTKLA 354 (398)
T ss_pred eEEEcCCcCccc--------ccccCCceeEEEEe
Confidence 999999999888 66667888888877
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.79 E-value=3.4e-17 Score=135.34 Aligned_cols=140 Identities=21% Similarity=0.408 Sum_probs=114.4
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC---C-----------------------ceeEEeeccCCCeeEEEe
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---S-----------------------PVIKVEKAHDADLHCVDW 222 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~-----------------------~~~~~~~~~~~~i~~~~~ 222 (387)
+..|+|+.|-|.++..|+.+-.+|.+.+||..-.. . ..+.......+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 36899999999888899999999999999863210 0 011112223457889999
Q ss_pred cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceecc
Q 016547 223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 302 (387)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 302 (387)
+| ++++||+.+.||.+||||..+ .+.+...+..-+...|++|||||++ +++|++|--|.||.+...
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt------~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGEDDLVtVwSf~er------ 364 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDT------QELLGVMKSYFGGLLCVCWSPDGKY-IVTGGEDDLVTVWSFEER------ 364 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccH------HHHHHHHHhhccceEEEEEcCCccE-EEecCCcceEEEEEeccc------
Confidence 99 999999999999999999998 5666666666678999999999997 579999999999999875
Q ss_pred CCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 303 GPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
+++..-.+|.++|+.++|.|
T Consensus 365 ---------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 ---------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---------eEEEeccccccceeeEeecc
Confidence 56777789999999999984
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=5.6e-18 Score=127.65 Aligned_cols=241 Identities=16% Similarity=0.197 Sum_probs=166.5
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
.+...+++|.+ .|+++.|..+++ |.+|..-|.|.+|++++....
T Consensus 5 dP~fvLRp~~~-~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------------- 48 (323)
T KOG0322|consen 5 DPFFVLRPHSS-SVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------------- 48 (323)
T ss_pred CCeeEeccccc-hheehhhccchh-hhcccccceEEEEEeecCccc----------------------------------
Confidence 67788899987 689999987765 999999999999999865332
Q ss_pred CCCCCceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----------------------e------
Q 016547 157 PSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----------------------V------ 206 (387)
Q Consensus 157 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------------~------ 206 (387)
..++ .+...|+.+.-.|++ .+.+-+.|+.+.+|++.-.... .
T Consensus 49 ------~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 49 ------PLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ------hhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence 2333 456677777777764 4777778888888887542100 0
Q ss_pred ------------------eEE----eeccCCCeeEEEecCCCC--CeEEEeeCCCeEEEEEeccCCC----CCCCCceEE
Q 016547 207 ------------------IKV----EKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTS----NGVGSPINK 258 (387)
Q Consensus 207 ------------------~~~----~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~ 258 (387)
+.. .....+.+.+..+.-.++ -++++|-.+|.+.+||+.+.+. ....+.+..
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 000 001123344444322122 3667788899999999998311 001133444
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
...|..+|.++.+.+.-.. =++|+.+..+..|++........ .-....-....|..+..-||++.++
T Consensus 201 ~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~s~gslq-----------~~~e~~lknpGv~gvrIRpD~KIlA- 267 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNHSTGSLQ-----------IRKEITLKNPGVSGVRIRPDGKILA- 267 (323)
T ss_pred hhhccCcceeeeechhhcC-CcCCCccccceeeeeccccCccc-----------ccceEEecCCCccceEEccCCcEEe-
Confidence 5568899999999874332 24788888899999986422111 1111122334788999999998777
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|+|.|+.||||+.+ +..++..+.-|++.|.+++|+|
T Consensus 268 -------TAGWD~RiRVyswr------tl~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 268 -------TAGWDHRIRVYSWR------TLNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred -------ecccCCcEEEEEec------cCCchhhhhhhhcceeEEEeCC
Confidence 89999999999999 8999999999999999999998
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3.8e-16 Score=132.52 Aligned_cols=244 Identities=9% Similarity=0.136 Sum_probs=148.0
Q ss_pred EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-CCCeEEEEEcCCCcCccc
Q 016547 46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSA 124 (387)
Q Consensus 46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~ 124 (387)
++++...++.|.+||+.+... ...+..+... + ....++++|++++|++++ .++.|.+|+++......
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~---------l~~~~~~~~~-~-~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~- 71 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGA---------LTLLQVVDVP-G-QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT- 71 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCc---------eeeeeEEecC-C-CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-
Confidence 344556789999999964310 0233334322 2 246899999999987654 57899999986211000
Q ss_pred cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547 125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 204 (387)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 204 (387)
..... ........+.++|++..++++...++.|.+|++.+...
T Consensus 72 ------------------------------------~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 72 ------------------------------------FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred ------------------------------------Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 00001 11223567999999944444445689999999974321
Q ss_pred c--eeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCC-CCceEEeccccceEEEEEEcCCCCeeEE
Q 016547 205 P--VIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVFG 280 (387)
Q Consensus 205 ~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ll~ 280 (387)
. ..... .+......++++| +++++++++ .++.|.+||+.+...... ........ .......++|+|+++++++
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 115 PVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEE
Confidence 1 12222 2334567889999 887775554 569999999976210000 00001111 2334678999999998776
Q ss_pred EecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc------CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547 281 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ 354 (387)
Q Consensus 281 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~ 354 (387)
+...++.|.+|++....... ..+..+.. +......+.++|++++++++.. .++.|.
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~-----------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------~~~~I~ 253 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEI-----------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-------TASLIS 253 (330)
T ss_pred EecCCCEEEEEEEeCCCCCE-----------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-------CCCeEE
Confidence 66669999999997421111 01111111 1223456899999999987433 348999
Q ss_pred EEecC
Q 016547 355 IWRMS 359 (387)
Q Consensus 355 iw~~~ 359 (387)
+|+++
T Consensus 254 v~~i~ 258 (330)
T PRK11028 254 VFSVS 258 (330)
T ss_pred EEEEe
Confidence 99996
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-16 Score=126.27 Aligned_cols=276 Identities=13% Similarity=0.163 Sum_probs=176.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEEecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s~~~d 108 (387)
.+-.+..++|++ .-.-+|++..|-.|++||-... ....++......|+|++|-|.+ +.|+.|+.
T Consensus 97 s~~dlr~~aWhq-H~~~fava~nddvVriy~ksst-------------~pt~Lks~sQrnvtclawRPlsaselavgCr- 161 (445)
T KOG2139|consen 97 SEIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSST-------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR- 161 (445)
T ss_pred hhcceeeEeech-hhhhhhhhccCcEEEEeccCCC-------------CCceecchhhcceeEEEeccCCcceeeeeec-
Confidence 345678899998 6667888899999999997663 2234444444469999999965 45666664
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
+-|.+|........... ++ ........+....+| .+|++++|.+|| ..++++
T Consensus 162 ~gIciW~~s~tln~~r~-------------------------~~-~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tA 213 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRN-------------------------IR-MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTA 213 (445)
T ss_pred ceeEEEEcCcccccccc-------------------------cc-cccccchhheeCCCC-ceeeEEEEcCCC-CEEeec
Confidence 56899987643211100 00 000001112333455 789999999999 667776
Q ss_pred c-CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547 189 G-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 267 (387)
Q Consensus 189 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 267 (387)
+ .|..|.|||..++....+. ....+.+.-+.|+| ++.+|++++-|+..++|..... ....+-.- -.+.|.
T Consensus 214 S~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~-----wt~erw~l-gsgrvq 284 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS-----WTKERWIL-GSGRVQ 284 (445)
T ss_pred ccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc-----ceecceec-cCCcee
Confidence 6 5678999999998854333 23456788999999 9999999999999999965542 33333333 245899
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee------cc---CCCCeeEEEEccCCCeEEE
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------AG---HRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~l~~ 338 (387)
..+|+|+|++||.+++.. -++|.+...++..............++..+ .+ -.+++.+++|.|.|.+|++
T Consensus 285 tacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 999999999998887644 455666544443322211111111111111 11 1457899999999999998
Q ss_pred EecCCCCCCCCCceEEEEecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.-.....--.-..|.+||..
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred EEcCCchhhhhhhhhhhhccc
Confidence 764220001122456677766
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=6e-19 Score=143.01 Aligned_cols=258 Identities=12% Similarity=0.153 Sum_probs=193.6
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 113 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v 113 (387)
-..+.|.. +|+.|+.|+..|.|..+|..++ +....+..-. .|..+.|..+.+++|++- ...+.|
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~------------~L~~Ei~v~E--tv~Dv~~LHneq~~AVAQ-K~y~yv 195 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTK------------KLHFEINVME--TVRDVTFLHNEQFFAVAQ-KKYVYV 195 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccc------------eeeeeeehhh--hhhhhhhhcchHHHHhhh-hceEEE
Confidence 35677777 8999999999999999999998 5555555544 488999999999888875 578999
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 193 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 193 (387)
||-.. ..+..++.| ..|..+.|.|.- .+|++++..|.
T Consensus 196 YD~~G-----------------------------------------tElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~ 232 (545)
T KOG1272|consen 196 YDNNG-----------------------------------------TELHCLKRH-IRVARLEFLPYH-FLLVAASEAGF 232 (545)
T ss_pred ecCCC-----------------------------------------cEEeehhhc-Cchhhhcccchh-heeeecccCCc
Confidence 98652 112334444 568899999987 88999999999
Q ss_pred EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC
Q 016547 194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 273 (387)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 273 (387)
++.-|+.+++ .+..+....+.+..|+-+| -+..+-+|...|+|.+|.... ..++..+..|.++|.++++.+
T Consensus 233 L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 233 LKYQDVSTGK--LVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVDR 303 (545)
T ss_pred eEEEeechhh--hhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEECC
Confidence 9999999998 5666667778899999999 888999999999999999988 888888989999999999999
Q ss_pred CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceE
Q 016547 274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL 353 (387)
Q Consensus 274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i 353 (387)
+|+| +|+.+.|..++|||+++..+.. +... ..+...+++|..| ++| .|....|
T Consensus 304 ~G~Y-MaTtG~Dr~~kIWDlR~~~ql~---------------t~~t-p~~a~~ls~Sqkg--lLA--------~~~G~~v 356 (545)
T KOG1272|consen 304 GGRY-MATTGLDRKVKIWDLRNFYQLH---------------TYRT-PHPASNLSLSQKG--LLA--------LSYGDHV 356 (545)
T ss_pred CCcE-EeecccccceeEeeeccccccc---------------eeec-CCCcccccccccc--cee--------eecCCee
Confidence 9997 4799999999999999864321 1111 2356778888655 342 2233589
Q ss_pred EEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 354 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 354 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.||.=..........+... ..-.++|..+.|.|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~-H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMN-HRCGGPVEDLRFCP 389 (545)
T ss_pred eeehhhhcCCCCCCcchhh-hccCcccccceecc
Confidence 9996331100001111111 11234788888877
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.1e-16 Score=140.24 Aligned_cols=239 Identities=12% Similarity=0.118 Sum_probs=153.5
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 130 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~ 130 (387)
.+|.+||.+.. .+ ..+..+.. .+.+..|+|||+.|+..+.+ ..|.+||+.++..
T Consensus 184 ~~l~i~D~~g~------------~~-~~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------- 240 (433)
T PRK04922 184 YALQVADSDGY------------NP-QTILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------- 240 (433)
T ss_pred EEEEEECCCCC------------Cc-eEeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------
Confidence 36888998654 22 33444544 57899999999999877643 4699999875422
Q ss_pred cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeE
Q 016547 131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 208 (387)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 208 (387)
..+....+...+..|+|+|..++++.+.+| .|++||+.+++ ..
T Consensus 241 --------------------------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~ 285 (433)
T PRK04922 241 --------------------------------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LT 285 (433)
T ss_pred --------------------------------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eE
Confidence 112222334457899999965556666655 59999998876 33
Q ss_pred EeeccCCCeeEEEecCCCCCeEEEeeC-CCe--EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547 209 VEKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285 (387)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d 285 (387)
.+..+.......+|+| +++.|+..+. +|. |.++|+.. ++ ...+..+.......+|+|+|++++++...+
T Consensus 286 ~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 286 RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence 4445555567889999 8988887664 455 55555544 33 222322333455789999999866554433
Q ss_pred C--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547 286 G--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 363 (387)
Q Consensus 286 ~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~ 363 (387)
+ .|.+||+...... .+. +........|+|+|++++.+... +..+.|.++++.
T Consensus 358 ~~~~I~v~d~~~g~~~----------------~Lt-~~~~~~~p~~spdG~~i~~~s~~-----~g~~~L~~~~~~---- 411 (433)
T PRK04922 358 GQYRIAVMDLSTGSVR----------------TLT-PGSLDESPSFAPNGSMVLYATRE-----GGRGVLAAVSTD---- 411 (433)
T ss_pred CceeEEEEECCCCCeE----------------ECC-CCCCCCCceECCCCCEEEEEEec-----CCceEEEEEECC----
Confidence 3 5899998764211 111 22234567899999988766532 223567888876
Q ss_pred cccchhhhhhhccCceEEEeeecC
Q 016547 364 RPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 364 ~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.....+..+.+.+...+|+|
T Consensus 412 ---g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 ---GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---CCceEEcccCCCCCCCCccCC
Confidence 444555655667788888887
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.3e-17 Score=144.09 Aligned_cols=223 Identities=12% Similarity=0.089 Sum_probs=148.3
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
.+..|...+...+|+| +++.|+..+.+ ..|++||+.+++. +.+..+.+|. ..++|+|||+.|
T Consensus 198 ~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~----------~~l~~~~g~~----~~~~wSPDG~~L 262 (429)
T PRK01742 198 IVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGAR----------KVVASFRGHN----GAPAFSPDGSRL 262 (429)
T ss_pred EeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCce----------EEEecCCCcc----CceeECCCCCEE
Confidence 3456788899999999 78888776543 4799999987721 1222233332 368999999988
Q ss_pred EEec-CCCeEEEEEcC--CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 103 LSGG-KDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 103 ~s~~-~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+.++ .+|.+.||.++ ++. ...+..+...+....|+|
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~-----------------------------------------~~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT-----------------------------------------PSQLTSGAGNNTEPSWSP 301 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC-----------------------------------------eEeeccCCCCcCCEEECC
Confidence 8764 68877776543 211 133344556678899999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+|..+++++..+|...+|++....... ... .+.. ....|+| ++++++..+.++ +.+||+.+ +......
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~------g~~~~lt 369 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTS------GSTEVLS 369 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCC------CCeEEec
Confidence 995556666678888999876533212 222 3333 4678999 999998888766 55589886 4433222
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
..+ ....+.|+|+|+.+ +.++.++.+.+|++..... .....+..|.+.+...+|+|-
T Consensus 370 ~~~--~~~~~~~sPdG~~i-~~~s~~g~~~~l~~~~~~G-------------~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 370 STF--LDESPSISPNGIMI-IYSSTQGLGKVLQLVSADG-------------RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCC--CCCCceECCCCCEE-EEEEcCCCceEEEEEECCC-------------CceEEccCCCCCCCCcccCCC
Confidence 222 23567899999965 5666788888887643111 235556678888899999984
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.7e-16 Score=136.44 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=154.2
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC---CCeEEEEEcCCCcCccccCCCcc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA 130 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~ 130 (387)
..|.+||.+.. ....+..|.. .+....|+|||+.|+..+. +..|.+||+.++..
T Consensus 182 ~~l~~~d~dg~-------------~~~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------- 238 (435)
T PRK05137 182 KRLAIMDQDGA-------------NVRYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------- 238 (435)
T ss_pred eEEEEECCCCC-------------CcEEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------
Confidence 37888887654 2344555655 6889999999999887653 46899999975422
Q ss_pred cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeE
Q 016547 131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIK 208 (387)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~ 208 (387)
..+..+.+.+....|+|+|..++++.+.++. |.+||+.+++ ..
T Consensus 239 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~ 283 (435)
T PRK05137 239 --------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TT 283 (435)
T ss_pred --------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eE
Confidence 2233345567788999999665667666665 7777887766 34
Q ss_pred EeeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547 209 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285 (387)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d 285 (387)
.+..+........|+| +++.++..+. +| .|.++|+.. + ....+..+...+....|+|+|+.++.+....
T Consensus 284 ~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g------~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 284 RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG------S-NPRRISFGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC------C-CeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence 4555556677899999 8988887764 34 577777654 3 3344433445567789999999866554333
Q ss_pred --CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCC--ceEEEEecCCC
Q 016547 286 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG--GTLQIWRMSDL 361 (387)
Q Consensus 286 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d--g~i~iw~~~~~ 361 (387)
..|.+||+...... . +. ....+....|+|||+.++.+.... +.+ ..+.++++.
T Consensus 356 ~~~~i~~~d~~~~~~~-------------~---lt-~~~~~~~p~~spDG~~i~~~~~~~----~~~~~~~L~~~dl~-- 412 (435)
T PRK05137 356 GQFSIGVMKPDGSGER-------------I---LT-SGFLVEGPTWAPNGRVIMFFRQTP----GSGGAPKLYTVDLT-- 412 (435)
T ss_pred CceEEEEEECCCCceE-------------e---cc-CCCCCCCCeECCCCCEEEEEEccC----CCCCcceEEEEECC--
Confidence 35778887543111 1 11 112467789999999888765422 222 468888887
Q ss_pred cccccchhhhhhhccCceEEEeeecC
Q 016547 362 IYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+. ...+. ..+.+...+|+|
T Consensus 413 ----g~~-~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 ----GRN-EREVP-TPGDASDPAWSP 432 (435)
T ss_pred ----CCc-eEEcc-CCCCccCcccCC
Confidence 222 23333 234466677776
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.6e-15 Score=119.67 Aligned_cols=218 Identities=13% Similarity=0.202 Sum_probs=143.4
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCC--eEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP--DLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
....|+|++|-|.....|+.|+..| |.||..+...............+ +....+| .+|+++.|.+||..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeeccc
Confidence 4678999999998888999988876 99999876544333211111122 3334445 47999999999999999885
Q ss_pred -CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 108 -DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 108 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
|..|+|||..++.... ......+.++-+.|+||+ ..|+
T Consensus 216 gsssi~iWdpdtg~~~p----------------------------------------L~~~glgg~slLkwSPdg-d~lf 254 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIP----------------------------------------LIPKGLGGFSLLKWSPDG-DVLF 254 (445)
T ss_pred CcceEEEEcCCCCCccc----------------------------------------ccccCCCceeeEEEcCCC-CEEE
Confidence 6789999998764321 112234678899999999 7788
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC---------ceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS---------PIN 257 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~ 257 (387)
.+.-|+..++|+..... ...+.. ...+.|..-+|+| +|++|+.... |.-++|.+.-........ ++.
T Consensus 255 aAt~davfrlw~e~q~w-t~erw~-lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSW-TKERWI-LGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred Eecccceeeeehhcccc-eeccee-ccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeec
Confidence 88999999999654433 122222 3445899999999 8876665543 344556655432211111 111
Q ss_pred Eec-----c----ccceEEEEEEcCCCCeeEEEecCC--------CeEEEEeCCCC
Q 016547 258 KFE-----G----HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKV 296 (387)
Q Consensus 258 ~~~-----~----~~~~i~~~~~~~~~~~ll~s~~~d--------~~i~vwd~~~~ 296 (387)
.+. . ..+.+.+++|.|.|.+|. +.-.. ..|.+||.+..
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLa-v~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLA-VIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEE-EEEcCCchhhhhhhhhhhhccccc
Confidence 111 1 246788999999999864 43322 23677887763
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.8e-16 Score=138.49 Aligned_cols=287 Identities=13% Similarity=0.166 Sum_probs=186.4
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC---CEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---PYVLS 104 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~---~~l~s 104 (387)
++-...+..++-.+++.+.++.... ..|.||...++ .++..+.+|.. +++.+.+.|.. .++++
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg------------~~i~~l~~~~a-~l~s~~~~~~~~~~~~~~~ 77 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATG------------ECITSLEDHTA-PLTSVIVLPSSENANYLIV 77 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchH------------hhhhhcccccC-ccceeeecCCCccceEEEE
Confidence 3444444444434437777766554 58999999999 77788999998 68899988754 46789
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCccc----C----CCCCCceeccCCCC----------CCCCCCCCCCC--CCCCcee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAK----S----AGSSGSIIKQSPKP----------GDGNDKAADGP--SVGPRGI 164 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~ 164 (387)
++.||.|++||...+.....+...... . .... ......... ........... .......
T Consensus 78 ~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s-~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 78 CSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADIS-ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred EecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcc-ceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence 999999999999887554443322111 0 0000 000000000 00000000000 0011111
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce--eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
+..|.. -.++.+++.+ . +.....+..+.+|+........ ...-..|.-.+++.+++| +++++|+|..||.|.+|
T Consensus 157 ~~~~~~-~~~I~~~~~g-e-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 157 LKEHQE-PKSIVDNNSG-E-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVW 232 (792)
T ss_pred hhhhcC-CccEEEcCCc-e-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEE
Confidence 222322 4567788777 4 3344456789999987744111 112234667789999999 99999999999999999
Q ss_pred EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547 243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 322 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
.--... ........+.-|...|++++|+++|.+|+ +|+.+|.+-+|.+.+.++. -+..-.+
T Consensus 233 ~d~~~~--~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kq----------------fLPRLgs 293 (792)
T KOG1963|consen 233 RDFGSS--DDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQ----------------FLPRLGS 293 (792)
T ss_pred eccccc--cccccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCcc----------------cccccCC
Confidence 644311 11445677888999999999999999865 9999999999999986432 1233457
Q ss_pred CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+|..+.++||+.+..+.+ .|+.|.+-.+.+
T Consensus 294 ~I~~i~vS~ds~~~sl~~--------~DNqI~li~~~d 323 (792)
T KOG1963|consen 294 PILHIVVSPDSDLYSLVL--------EDNQIHLIKASD 323 (792)
T ss_pred eeEEEEEcCCCCeEEEEe--------cCceEEEEeccc
Confidence 899999999999887544 458999999873
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=141.32 Aligned_cols=259 Identities=16% Similarity=0.219 Sum_probs=168.9
Q ss_pred eeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE
Q 016547 3 LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL 82 (387)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
+-.+...+.-|+..... ....+.+|++.|.|++|+. +|+.+|+|+.|..|.+|+-.-. . ..-
T Consensus 28 ~lAAg~rlliyD~ndG~---llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE------------G--~Lk 89 (1081)
T KOG1538|consen 28 ILAAGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE------------G--ILK 89 (1081)
T ss_pred EEecCCEEEEEeCCCcc---cccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc------------c--eee
Confidence 34455666666655442 2345669999999999999 9999999999999999986433 0 111
Q ss_pred eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc--CCCCCCceeccCCCCCCCCCCCCCCCCC-
Q 016547 83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSV- 159 (387)
Q Consensus 83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (387)
..|.+ .|.|+.|+|-...|++|+- ...-+|..+.............. .-..++... ..+..++.+.+.+....
T Consensus 90 YSH~D-~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyl--alG~~nGTIsiRNk~gEe 165 (1081)
T KOG1538|consen 90 YSHND-AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYL--ALGMFNGTISIRNKNGEE 165 (1081)
T ss_pred eccCC-eeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEE--EEeccCceEEeecCCCCc
Confidence 23444 5677777777777777663 24556665543221111110000 011111111 11222333333322221
Q ss_pred -CCceeecCCCCCeEEEEEccCC----CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547 160 -GPRGIYNGHEDTVEDVTFCPSS----AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 160 -~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
..+..-.+..++|.+++|+|.. ...+++.....++.+|.+.... +.....-.-...|+.+.+ +|.+++.|+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---Igk~r~L~FdP~CisYf~-NGEy~LiGG 241 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---IGKDRALNFDPCCISYFT-NGEYILLGG 241 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---ecccccCCCCchhheecc-CCcEEEEcc
Confidence 1222334577899999999874 2467788888888888876433 222233344567999999 999999999
Q ss_pred CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 235 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 235 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.|+.+++|-.. +..+.++...+..|..++..|++++ ++.|+.||+|..|++-.
T Consensus 242 sdk~L~~fTR~-------GvrLGTvg~~D~WIWtV~~~PNsQ~-v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 242 SDKQLSLFTRD-------GVRLGTVGEQDSWIWTVQAKPNSQY-VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCCceEEEeec-------CeEEeeccccceeEEEEEEccCCce-EEEEEccCeeehhhhHH
Confidence 99999999655 7777787778899999999999997 57899999999998754
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=7e-16 Score=134.66 Aligned_cols=226 Identities=10% Similarity=0.060 Sum_probs=141.8
Q ss_pred EeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (387)
+..+.. .+.+.+|+|||+.|+..+.+ ..|.+||+.++..
T Consensus 191 l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~------------------------------------- 232 (427)
T PRK02889 191 ALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR------------------------------------- 232 (427)
T ss_pred eccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-------------------------------------
Confidence 444554 57899999999999876643 3599999976432
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEcc--CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA- 235 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~- 235 (387)
..+....+.+....|+|+|..++++.+.+|...+|.+. .+. ...+..+........|+| +++.|+..+.
T Consensus 233 ----~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~ 304 (427)
T PRK02889 233 ----RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSP-DGRSIYFTSDR 304 (427)
T ss_pred ----EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcC-CCCEEEEEecC
Confidence 11222234456789999995555677888887776654 333 334444555567789999 8988776654
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCcee
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGL 313 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~ 313 (387)
+|...+|.+.... +. ...+..........+|+|+|++++.+...++ .|.+||+......
T Consensus 305 ~g~~~Iy~~~~~~----g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-------------- 365 (427)
T PRK02889 305 GGAPQIYRMPASG----GA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-------------- 365 (427)
T ss_pred CCCcEEEEEECCC----Cc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--------------
Confidence 5677777765321 22 2222222233446789999998654443333 6999999874221
Q ss_pred eeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 314 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 314 ~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+.. ........|+|+++.++.+.... + ...+.+.++. +.....+..+.+.+...+|+|
T Consensus 366 --~lt~-~~~~~~p~~spdg~~l~~~~~~~----g-~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 366 --ALTD-TTRDESPSFAPNGRYILYATQQG----G-RSVLAAVSSD-------GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred --EccC-CCCccCceECCCCCEEEEEEecC----C-CEEEEEEECC-------CCceEEeecCCCCCCCCccCC
Confidence 1111 12346789999999988765432 1 2345555554 445555556667788888887
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=5.5e-18 Score=147.01 Aligned_cols=223 Identities=19% Similarity=0.351 Sum_probs=168.9
Q ss_pred eEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547 79 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 79 ~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (387)
+..+.+|.. +|+|..|...|.++++|+.|..++||.+++..
T Consensus 183 ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------------------------------------- 223 (1113)
T KOG0644|consen 183 IKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------------------------------------- 223 (1113)
T ss_pred HHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchh--------------------------------------
Confidence 345778887 79999999999999999999999999987643
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 238 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 238 (387)
++....+|.+.|+.++.+.++ .++++++.|..|++|.+..+. .+..+.+|.+.|++++|+| .. +.+.||+
T Consensus 224 --~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP-~~----sss~dgt 293 (1113)
T KOG0644|consen 224 --CLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSP-RA----SSSDDGT 293 (1113)
T ss_pred --hhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCc-cc----cCCCCCc
Confidence 336678999999999999887 889999999999999999988 6778889999999999999 33 7789999
Q ss_pred EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
+++||.+-........+ ..+. ...-+.++.|..++.. +++++.|+.-..|.+... .
T Consensus 294 ~~~wd~r~~~~~y~prp-~~~~-~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l---------------------~ 349 (1113)
T KOG0644|consen 294 CRIWDARLEPRIYVPRP-LKFT-EKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQL---------------------A 349 (1113)
T ss_pred eEeccccccccccCCCC-CCcc-cccceeeeeccccccc-cccccCCcccccchhhHh---------------------h
Confidence 99999982110000011 1111 1245667777777775 679999999988887653 2
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+...+.-+.++.+-..+.+ +.-.+-.+++|++. ++.+++.+.+|.+.+..+.|||
T Consensus 350 ~~~~~lif~t~ssd~~~~~~-------~ar~~~~~~vwnl~------~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 350 WRSNLLIFVTRSSDLSSIVV-------TARNDHRLCVWNLY------TGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred hhccceEEEeccccccccce-------eeeeeeEeeeeecc------cchhhhhhcccccceeeeeecC
Confidence 22222222223323223333 33444799999999 8999999999999999999998
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2e-14 Score=113.80 Aligned_cols=197 Identities=15% Similarity=0.206 Sum_probs=142.9
Q ss_pred cEEEEEecCCCCcEEEEecCC--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 33 EVNRIRELPQNTKIVATHTDS--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
.|--+-|+. .++|..+.+ +.+++.+++.. ..+..+.-.+ .|.++.++ .++|+++-.+ .
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~------------~~ICe~~fpt--~IL~VrmN--r~RLvV~Lee-~ 107 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK------------TTICEIFFPT--SILAVRMN--RKRLVVCLEE-S 107 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccC------------ceEEEEecCC--ceEEEEEc--cceEEEEEcc-c
Confidence 345555654 455555443 34888888776 4455554444 47788884 4677777754 5
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE-e-
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS-V- 188 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~- 188 (387)
|.|||+++.+..... .....+...+.++..++.+ .+++- +
T Consensus 108 IyIydI~~MklLhTI-------------------------------------~t~~~n~~gl~AlS~n~~n-~ylAyp~s 149 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTI-------------------------------------ETTPPNPKGLCALSPNNAN-CYLAYPGS 149 (391)
T ss_pred EEEEecccceeehhh-------------------------------------hccCCCccceEeeccCCCC-ceEEecCC
Confidence 999999865433221 2223345556666666665 45554 2
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEEeccCCCCCCCCceEEeccc--cce
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGH--SAA 265 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~--~~~ 265 (387)
...|.|.+||..+-+ ....+..|.+++-+++|++ +|.+||+++..|+ ||+|.+.+ ++.+.+|+.- ...
T Consensus 150 ~t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~ 220 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVS 220 (391)
T ss_pred CCCceEEEEEcccce--eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeE
Confidence 356899999998877 5677789999999999999 9999999999996 79999988 8899988632 346
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
|.+++|+|++++ |++.+..++|+||.+....
T Consensus 221 IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSPDSQF-LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence 899999999996 5677889999999998754
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.74 E-value=5.4e-16 Score=119.25 Aligned_cols=158 Identities=20% Similarity=0.374 Sum_probs=110.0
Q ss_pred EEEEEccCCCeeEEEecC---------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe--eCCCeEEE
Q 016547 173 EDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRM 241 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~~ 241 (387)
-.+.|+|+|..+++.... -+...+|.++....+.........++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 467899999665555541 2346666665544333333333456799999999 88876554 45789999
Q ss_pred EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
||++ .+.+..+. ...++.+.|+|+|++++++| ...|.|.+||+++. ..+... .
T Consensus 88 yd~~-------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~---------------~~i~~~-~ 142 (194)
T PF08662_consen 88 YDVK-------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK---------------KKISTF-E 142 (194)
T ss_pred EcCc-------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC---------------EEeecc-c
Confidence 9997 57777775 46778999999999765444 23578999999964 223222 2
Q ss_pred CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
| ..++.++|+|+|++++.+.+.- --..|+.++||++.
T Consensus 143 ~-~~~t~~~WsPdGr~~~ta~t~~--r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 143 H-SDATDVEWSPDGRYLATATTSP--RLRVDNGFKIWSFQ 179 (194)
T ss_pred c-CcEEEEEEcCCCCEEEEEEecc--ceeccccEEEEEec
Confidence 3 3578999999999998765432 23467999999998
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.74 E-value=3.3e-16 Score=122.66 Aligned_cols=302 Identities=15% Similarity=0.225 Sum_probs=181.3
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----------CceEEEEECCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPT 98 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~~v~~~~~~~~ 98 (387)
..+-|.++.|.. .|++||||..+|.|.++.-+..... .......++.|.. ..|+.+.|.++
T Consensus 24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~-------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKG-------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred hhcceeeEEeec-ccceEeecCCCCeEEEeeccccccc-------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence 457789999998 9999999999999999976554220 1122223333321 24788999987
Q ss_pred CC--EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCc-eeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEE
Q 016547 99 EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS-IIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVED 174 (387)
Q Consensus 99 ~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 174 (387)
++ .++....|++|++|.+................+..... +........+ ......+.+.+ ..|+-.|++
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~------~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD------LEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc------ceeeeeeeeeccccceeEeee
Confidence 65 45556679999999998654433111111111111110 1000000000 01111223333 468889999
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeecc-----CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
+.++.|. ..++++ .|-.|.+|+++-..... +...+++ ..-|++..|+|...+.|+-.+..|+|++.|+|...
T Consensus 170 IS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 170 ISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 9999998 666665 67899999987644211 2222222 23578899999888999999999999999999521
Q ss_pred CCCCCCceE----------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547 249 SNGVGSPIN----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 249 ~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
-......+. -+..--..|..+.|+++|++++ +-. --+|++||+....++....+.......++.. +.
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~-lY 324 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS-LY 324 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHHHHHHH-Hh
Confidence 000000011 1111224688999999999865 442 4789999998766554322211100000000 00
Q ss_pred cCCCC---eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 319 GHRDK---VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 319 ~~~~~---v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
-.+. -..++|+-++.+++ ||+..+.++++++.
T Consensus 325 -EnD~IfdKFec~~sg~~~~v~--------TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 325 -ENDAIFDKFECSWSGNDSYVM--------TGSYNNVFRVFNLA 359 (433)
T ss_pred -hccchhheeEEEEcCCcceEe--------cccccceEEEecCC
Confidence 0112 25678998888888 99999999999965
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.8e-15 Score=117.67 Aligned_cols=262 Identities=11% Similarity=0.104 Sum_probs=180.4
Q ss_pred cCCCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 29 IHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 29 ~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.-...|..++|.-+ ..+.+...+.|..+..+.++..+...... ........+. .|..++. ....|++|-.
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~------~~~~~~l~~~-~I~gl~~--~dg~Litc~~ 123 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD------DAKTVSLGTK-SIKGLKL--ADGTLITCVS 123 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc------cccccccccc-cccchhh--cCCEEEEEec
Confidence 34556677776642 23345444466667777766653222110 0111222222 3444443 2447888888
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
+|.+.+|..+.+... ..++..+..+ .++..+.-++..+.++++
T Consensus 124 sG~l~~~~~k~~d~h------------------------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~ 166 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLH------------------------------------SSKLIKLATG-PGLYDVRQTDTDPYIVAT 166 (412)
T ss_pred CCcEEEEeccCCccc------------------------------------cccceeeecC-CceeeeccCCCCCceEec
Confidence 999999998754211 1111223333 456777777777788888
Q ss_pred ecCC--CeEEEEEccCCCCceeEEeec---------cCCCeeEEEecCCC--CCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 188 VGDD--SCLILWDARVGTSPVIKVEKA---------HDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 188 ~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
|+.. ..+.+||+...++ +..-.. -.-.++.+.|-+ . ...|++++.-+.+++||.+.. .+
T Consensus 167 GGke~~n~lkiwdle~~~q--iw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q-----RR 238 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQ--IWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ-----RR 238 (412)
T ss_pred Cchhcccceeeeeccccee--eeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc-----Cc
Confidence 9999 8999999988742 111110 122467888888 6 899999999999999999974 68
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
++.++.-.+.+|+++...|++.++ .+|..-|.+..||++..... ...+.+-.+.|.++..+|..+
T Consensus 239 PV~~fd~~E~~is~~~l~p~gn~I-y~gn~~g~l~~FD~r~~kl~--------------g~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPSGNFI-YTGNTKGQLAKFDLRGGKLL--------------GCGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred ceeEeccccCcceeeeecCCCcEE-EEecccchhheecccCceee--------------ccccCCccCCcceEEEcCCCc
Confidence 899998889999999999999975 58888999999999985221 223677889999999999988
Q ss_pred eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 373 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~ 373 (387)
+++ ++|-|..|||+|+. +.+++...
T Consensus 304 ~la--------s~GLDRyvRIhD~k------trkll~kv 328 (412)
T KOG3881|consen 304 VLA--------SCGLDRYVRIHDIK------TRKLLHKV 328 (412)
T ss_pred eEE--------eeccceeEEEeecc------cchhhhhh
Confidence 777 77888999999999 55665543
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=4e-16 Score=121.55 Aligned_cols=284 Identities=14% Similarity=0.260 Sum_probs=174.2
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-E
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V 102 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l 102 (387)
.++++..-+.|.-+.|..+.-.+|.....|+.|.+|++... .-...+..-.. .+.++.|+|||+. |
T Consensus 41 ~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------------ew~ckIdeg~a-gls~~~WSPdgrhiL 107 (447)
T KOG4497|consen 41 LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------------EWYCKIDEGQA-GLSSISWSPDGRHIL 107 (447)
T ss_pred HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc------------eeEEEeccCCC-cceeeeECCCcceEe
Confidence 33444445778888998855556667788999999999887 44445555555 4789999999965 5
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCccc---CCCCCCceec-cCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIK-QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
.+...|-.|.+|.+.+........+.... ....++.... .........+.+........+..+.-.+-..+++.|+
T Consensus 108 ~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs 187 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS 187 (447)
T ss_pred eeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence 56778999999999887554333332221 1111111111 1111111222222233344445555566778899999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC----------
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT---------- 248 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------- 248 (387)
||| +.++ +||---.- .+. .....-.+..++|+| .+++|++|+.|+.+|+.+--+-+
T Consensus 188 Pdg-~~la---------Vwd~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s 253 (447)
T KOG4497|consen 188 PDG-NWLA---------VWDNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS 253 (447)
T ss_pred CCC-cEEE---------Eecchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence 998 5554 46532221 111 112335688999999 99999999999999886632200
Q ss_pred ---------------------------CCC-----------------CCCceEEec------cccceEEEEEEcCCCCee
Q 016547 249 ---------------------------SNG-----------------VGSPINKFE------GHSAAVLCVQWSPDKSSV 278 (387)
Q Consensus 249 ---------------------------~~~-----------------~~~~~~~~~------~~~~~i~~~~~~~~~~~l 278 (387)
+.. ....+..++ .....+.-++|++|..+
T Consensus 254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y- 332 (447)
T KOG4497|consen 254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY- 332 (447)
T ss_pred ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-
Confidence 000 000011111 12235677999999986
Q ss_pred EEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 279 FGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 279 l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
+|+-.+ -+.+.+||++..+ +...-....+|....|+|..+.|++..+ ...+++|
T Consensus 333 ~aTrnd~~PnalW~Wdlq~l~----------------l~avLiQk~piraf~WdP~~prL~vctg--------~srLY~W 388 (447)
T KOG4497|consen 333 AATRNDKYPNALWLWDLQNLK----------------LHAVLIQKHPIRAFEWDPGRPRLVVCTG--------KSRLYFW 388 (447)
T ss_pred EeeecCCCCceEEEEechhhh----------------hhhhhhhccceeEEEeCCCCceEEEEcC--------CceEEEE
Confidence 455432 2569999999852 2222345568999999999998885432 2579999
Q ss_pred ecC
Q 016547 357 RMS 359 (387)
Q Consensus 357 ~~~ 359 (387)
...
T Consensus 389 ~ps 391 (447)
T KOG4497|consen 389 APS 391 (447)
T ss_pred cCC
Confidence 877
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=131.68 Aligned_cols=178 Identities=17% Similarity=0.332 Sum_probs=135.8
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeE--EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIK--VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------ 250 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------ 250 (387)
|.+ .-++.|-.-|.|.+.|....+...+. ........++++.|-|.+...++++-.+|.+++||.......
T Consensus 183 ~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 444 55778888899999987764311111 111234789999999978889999999999999987542110
Q ss_pred ----------------CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547 251 ----------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 314 (387)
Q Consensus 251 ----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 314 (387)
....++..+.--++.|+.++|+|||++ ||+.+.||.+||||+.+. .++
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~---------------eLl 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQ---------------ELL 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHH---------------HHH
Confidence 001233333334567999999999996 689999999999999874 233
Q ss_pred eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.....--+...+++|+|||+|++ +||.|-.|.||.+. .++.+..=++|++.|..|+|-|
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIv--------tGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIV--------TGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEE--------ecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence 33444557899999999999999 99999999999999 7889999999999999999976
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.71 E-value=2.2e-15 Score=118.11 Aligned_cols=217 Identities=16% Similarity=0.271 Sum_probs=151.3
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..+..||.+.|++...-| ..+-+++.+.|.+++||--.+.. +.-..+....-.+++++.+.++...|+
T Consensus 17 l~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~-----------q~wpsI~~~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSG-----------QYWPSIYHYMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEecccc-----------ccCchhhhhCCCCceEeeeeccceEEE
Confidence 345668999999988888 56678899999999999644331 111112112223578999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
.|-..|++.-+.+..--.. ....+.+..|...+..+-|+... .
T Consensus 85 vg~~ngtvtefs~sedfnk------------------------------------m~~~r~~~~h~~~v~~~if~~~~-e 127 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNK------------------------------------MTFLKDYLAHQARVSAIVFSLTH-E 127 (404)
T ss_pred EEEecceEEEEEhhhhhhh------------------------------------cchhhhhhhhhcceeeEEecCCc-e
Confidence 9999999998877532111 11112233344444443333322 2
Q ss_pred eEE---------------------------------------EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecC
Q 016547 184 EFC---------------------------------------SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 224 (387)
Q Consensus 184 ~l~---------------------------------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (387)
.++ .|...|.|.+-.+.....+.+..+.+|...+++++|.|
T Consensus 128 ~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~ 207 (404)
T KOG1409|consen 128 WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP 207 (404)
T ss_pred eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC
Confidence 233 33344445544444444456778889999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 225 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
....|.+|..|..+.+||+--. .....++.+|...|..+...+--+.+ .+++.||.|.+||+...
T Consensus 208 -~~~~LfSg~~d~~vi~wdigg~-----~g~~~el~gh~~kV~~l~~~~~t~~l-~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 208 -GQRLLFSGASDHSVIMWDIGGR-----KGTAYELQGHNDKVQALSYAQHTRQL-ISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -CCcEEEeccccCceEEEeccCC-----cceeeeeccchhhhhhhhhhhhheee-eeccCCCeEEEEeccce
Confidence 8999999999999999999853 34566788899999998888777754 58999999999999864
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=3.4e-17 Score=133.00 Aligned_cols=192 Identities=16% Similarity=0.270 Sum_probs=158.7
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
+.+.++.+|++|+.|+..|.|..+|..+........ -..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------------------------------v~E 171 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------------------------------VME 171 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------------------------------hhh
Confidence 588999999999999999999999998754322211 135
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
.|.++.|..+. ++|++ .....++|||-..-+ +..+.. ...|..+.|-| ..-+|++++..|.++.-|+.+
T Consensus 172 tv~Dv~~LHne-q~~AV-AQK~y~yvYD~~GtE---lHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~---- 240 (545)
T KOG1272|consen 172 TVRDVTFLHNE-QFFAV-AQKKYVYVYDNNGTE---LHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVST---- 240 (545)
T ss_pred hhhhhhhhcch-HHHHh-hhhceEEEecCCCcE---Eeehhh-cCchhhhcccc-hhheeeecccCCceEEEeech----
Confidence 68888998765 55555 467899999965444 444443 35789999999 888999999999999999999
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
++.+.++..-.+.+..+.-+|-+. ++-.|..+|+|.+|..... ..+..+..|.++|.++++.
T Consensus 241 --GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk---------------ePLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 241 --GKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK---------------EPLVKILCHRGPVSSIAVD 302 (545)
T ss_pred --hhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCc---------------chHHHHHhcCCCcceEEEC
Confidence 999999988888999999999887 6778999999999998874 2355667899999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
++|.|++ |.|.|..++|||++.
T Consensus 303 ~~G~YMa--------TtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 303 RGGRYMA--------TTGLDRKVKIWDLRN 324 (545)
T ss_pred CCCcEEe--------ecccccceeEeeecc
Confidence 9999998 899999999999994
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=7.2e-15 Score=114.67 Aligned_cols=270 Identities=12% Similarity=0.137 Sum_probs=172.0
Q ss_pred EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ecCCCeEEEEE
Q 016547 37 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GGKDKSVVLWS 115 (387)
Q Consensus 37 i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd 115 (387)
.+|+| +++++|+++.- .+.|=|.++. +..+.+.--. .|.-+.|..|..+++. ...|+.|.+|+
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tl------------q~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETL------------QLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchh------------hHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEE
Confidence 45788 99999998766 7888888776 2222222222 3567899988877654 56788999999
Q ss_pred cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEE
Q 016547 116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 195 (387)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 195 (387)
+....-. ..+.....++..++|+|+|+.++.+...+-.|.
T Consensus 78 l~Qpew~----------------------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 78 LVQPEWY----------------------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT 117 (447)
T ss_pred eecceeE----------------------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence 9754322 334455678999999999988888899999999
Q ss_pred EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------------------------------------CeE
Q 016547 196 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------------------------------------NSV 239 (387)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------------------------------------g~i 239 (387)
+|.+.+.+ ...++-....+..++|+| ++++.+.+++- +.+
T Consensus 118 VWSL~t~~---~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 118 VWSLNTQK---GYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred EEEeccce---eEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 99998877 223333345568889999 88888877642 223
Q ss_pred EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC---------------
Q 016547 240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP--------------- 304 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~--------------- 304 (387)
.+||.-- .-.+..++ .+-.+..++|+|.+++ ++.|+.|+.+||.+--+.+...+...
T Consensus 194 aVwd~~L------eykv~aYe-~~lG~k~v~wsP~~qf-lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 194 AVWDNVL------EYKVYAYE-RGLGLKFVEWSPCNQF-LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred EEecchh------hheeeeee-eccceeEEEeccccce-EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 3333221 11111111 2356889999999985 78999999998865332211111000
Q ss_pred ----------------CC-------CC-------CCceeeee------eccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 305 ----------------RT-------TN-------YPAGLFFQ------HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 305 ----------------~~-------~~-------~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
.. .. ..+..+.. +......+.-++|++|..+++. - .-.
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT-r-----nd~ 339 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT-R-----NDK 339 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee-e-----cCC
Confidence 00 00 00001111 1122346788999998876552 2 223
Q ss_pred CCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 349 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.-+.+-+||++ .-+ +..+-....+|.+..|.|
T Consensus 340 ~PnalW~Wdlq------~l~-l~avLiQk~piraf~WdP 371 (447)
T KOG4497|consen 340 YPNALWLWDLQ------NLK-LHAVLIQKHPIRAFEWDP 371 (447)
T ss_pred CCceEEEEech------hhh-hhhhhhhccceeEEEeCC
Confidence 55899999999 333 344444677888888876
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=3.5e-14 Score=110.34 Aligned_cols=239 Identities=14% Similarity=0.205 Sum_probs=149.8
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCC-----
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKD----- 108 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d----- 108 (387)
..++|+. +...++.|.++| .+||+.+-.+.. ...+.+.++ +.-+...-..++|+ .|+.+
T Consensus 9 lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~------------~~r~~~~~G-~~~veMLfR~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 9 LSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKES------------ASRQFIDGG-FKIVEMLFRSNYLALVGGGSRPKYP 73 (346)
T ss_pred eEEEEcc-CCceEEEEecCc-eEEEecCchhhh------------hhhccccCc-hhhhhHhhhhceEEEecCCCCCCCC
Confidence 4488888 778898988887 899998765221 111112211 11112222344443 34333
Q ss_pred -CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 109 -KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 109 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
..|.|||=.... ++..+ ....+|.++.+.++. +++
T Consensus 74 pNkviIWDD~k~~----------------------------------------~i~el-~f~~~I~~V~l~r~r---iVv 109 (346)
T KOG2111|consen 74 PNKVIIWDDLKER----------------------------------------CIIEL-SFNSEIKAVKLRRDR---IVV 109 (346)
T ss_pred CceEEEEecccCc----------------------------------------EEEEE-EeccceeeEEEcCCe---EEE
Confidence 479999933221 11222 235789999998763 444
Q ss_pred ecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
. ..+.|++|...+.-+ .+..+.. .+....+++-.. ...+||. |-.-|.|+|-|+.... ......+.+|.+
T Consensus 110 v-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~----~~~p~~I~AH~s 182 (346)
T KOG2111|consen 110 V-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTK----PNAPSIINAHDS 182 (346)
T ss_pred E-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcC----cCCceEEEcccC
Confidence 3 467899999874332 2333322 223333333332 3334443 3456999999998732 113578889999
Q ss_pred eEEEEEEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
.|.|++.+-+|. ++|++|..|+ |||||..++....+ +. .......|.+|+|||+..+|+
T Consensus 183 ~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E------------~R-RG~d~A~iy~iaFSp~~s~La------ 242 (346)
T KOG2111|consen 183 DIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQE------------LR-RGVDRADIYCIAFSPNSSWLA------ 242 (346)
T ss_pred ceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeee------------ee-cCCchheEEEEEeCCCccEEE------
Confidence 999999999999 6899999998 89999998644322 11 112345799999999998877
Q ss_pred CCCCCCCceEEEEecCCC
Q 016547 344 CDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~~ 361 (387)
+.+..|+|+||.+.+.
T Consensus 243 --vsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 243 --VSSDKGTLHIFSLRDT 258 (346)
T ss_pred --EEcCCCeEEEEEeecC
Confidence 3445599999999863
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.1e-13 Score=106.11 Aligned_cols=179 Identities=20% Similarity=0.368 Sum_probs=126.8
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC-cCccccCCCcccC
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-ITSSATDPATAKS 132 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~ 132 (387)
..|.|||=... +++.++.-.. +|.++.+.++ .|++.- .+.|.||.+.+. +.....+
T Consensus 75 NkviIWDD~k~------------~~i~el~f~~--~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e------ 131 (346)
T KOG2111|consen 75 NKVIIWDDLKE------------RCIIELSFNS--EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE------ 131 (346)
T ss_pred ceEEEEecccC------------cEEEEEEecc--ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee------
Confidence 47999993333 5666665554 5889999764 455554 679999998743 1111110
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-eeEE-EecCCCeEEEEEccCCCCceeEEe
Q 016547 133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFC-SVGDDSCLILWDARVGTSPVIKVE 210 (387)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 210 (387)
+. ...... ++..|..+ .+|+ -|-.-|.|.|-|+...+.......
T Consensus 132 -------------------------------t~-~NPkGl--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I 177 (346)
T KOG2111|consen 132 -------------------------------TR-SNPKGL--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII 177 (346)
T ss_pred -------------------------------cc-cCCCce--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE
Confidence 00 111112 22333222 2232 245679999999988764234677
Q ss_pred eccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEEeccCCCCCCCCceEEecc--ccceEEEEEEcCCCCeeEEEecCCCe
Q 016547 211 KAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGL 287 (387)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ll~s~~~d~~ 287 (387)
.+|.+.|.|++.+- +|.++|++|..|+ |||||..+ +.++.+++. ....|.+++|||+..+ ||++|+.|+
T Consensus 178 ~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgT 249 (346)
T KOG2111|consen 178 NAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGT 249 (346)
T ss_pred EcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCe
Confidence 89999999999999 9999999999997 89999999 899998862 3457999999999995 689999999
Q ss_pred EEEEeCCCCC
Q 016547 288 LNIWDYEKVG 297 (387)
Q Consensus 288 i~vwd~~~~~ 297 (387)
++||.++...
T Consensus 250 lHiF~l~~~~ 259 (346)
T KOG2111|consen 250 LHIFSLRDTE 259 (346)
T ss_pred EEEEEeecCC
Confidence 9999998743
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.9e-14 Score=123.63 Aligned_cols=219 Identities=13% Similarity=0.114 Sum_probs=137.6
Q ss_pred ecCCCcEEEEEecCCCCcEEEEec---CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHT---DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+.+...+|+| +++.|+..+ .+..|.+|++.+++. +.+..+.++ +....|+|||+.|+.
T Consensus 195 t~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~----------~~l~~~~~~----~~~~~~SPDG~~La~ 259 (429)
T PRK03629 195 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRH----NGAPAFSPDGSKLAF 259 (429)
T ss_pred ecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEccCCCCC----cCCeEECCCCCEEEE
Confidence 34667899999999 777777543 245799999987721 111122232 346899999998875
Q ss_pred e-cCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 105 G-GKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 105 ~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
. +.+| .|.+||++++.. ..+..+...+....|+|+|
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~-----------------------------------------~~lt~~~~~~~~~~wSPDG 298 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQI-----------------------------------------RQVTDGRSNNTEPTWFPDS 298 (429)
T ss_pred EEcCCCCcEEEEEECCCCCE-----------------------------------------EEccCCCCCcCceEECCCC
Confidence 4 4444 588888865321 1222233456788999999
Q ss_pred CeeEEEecCCCeEEEE--EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCCce
Q 016547 182 AQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~ 256 (387)
..++++...++...+| |+..++ ...+...........|+| ++++++..+.+ ..|.+||+.+ +. .
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~------g~-~ 367 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT------GG-V 367 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC------CC-e
Confidence 4444454445554555 665554 223333344566789999 99888876654 3588888876 43 2
Q ss_pred EEeccccceEEEEEEcCCCCeeEEEecCCCe---EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL---LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
..+.. ........|+|||+.++.++ .++. +.++++... ....+.+|.+.+...+|+|
T Consensus 368 ~~Lt~-~~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G~----------------~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 368 QVLTD-TFLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDGR----------------FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEeCC-CCCCCCceECCCCCEEEEEE-cCCCceEEEEEECCCC----------------CeEECccCCCCcCCcccCC
Confidence 33332 12234678999999765444 4443 667777542 2334566778888899987
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.2e-14 Score=125.80 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=139.2
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
++..|...+.+.+|+| +++.|+..+. +..|.+||+.+++ . ..+....+ ...+..|+|||+.|
T Consensus 198 ~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SpDG~~l 262 (433)
T PRK04922 198 TILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQ------------R-ELVASFRG-INGAPSFSPDGRRL 262 (433)
T ss_pred EeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCC------------E-EEeccCCC-CccCceECCCCCEE
Confidence 3446778899999999 7777777653 3469999998772 2 12223332 34578999999977
Q ss_pred E-EecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 103 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 103 ~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+ +.+.+| .|.+||+.++.. ..+..+.......+|+|
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~-----------------------------------------~~lt~~~~~~~~~~~sp 301 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL-----------------------------------------TRLTNHFGIDTEPTWAP 301 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe-----------------------------------------EECccCCCCccceEECC
Confidence 5 445555 588888875421 22233334456789999
Q ss_pred CCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEeccCCCCCCCC
Q 016547 180 SSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 180 ~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~ 254 (387)
++..++++...+|. |.++|+.+++. ..+..+.......+|+| ++++++..+.++ .|.+||+.+ ++
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~------g~ 371 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST------GS 371 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCe---EEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC------CC
Confidence 99444445445555 66667666552 22222334455789999 999888766543 689999876 44
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCC--CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
.. .+. +........|+|+|++++.+.... +.|.++++... ....+..+.+.+...+|+|
T Consensus 372 ~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----------------~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 372 VR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----------------VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEEcccCCCCCCCCccCC
Confidence 33 333 222345679999999876555433 35777777542 1222334455667777876
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.2e-15 Score=123.67 Aligned_cols=267 Identities=18% Similarity=0.274 Sum_probs=179.1
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCce-EEEEECCCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEP 100 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~~~~~~ 100 (387)
++.++.++|+..-+.|..+|+...++|||..-..|++||+... ...+.-|.+..+ .-.-++-|-.
T Consensus 42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL--------------SLKFERhlDae~V~feiLsDD~S 107 (703)
T KOG2321|consen 42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL--------------SLKFERHLDAEVVDFEILSDDYS 107 (703)
T ss_pred HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc--------------eeeeeecccccceeEEEeccchh
Confidence 4456778899999999999955556788999999999999876 234555655433 3333343444
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.++.--.|.+|.+...-..-. .+ .-...-..++++.-
T Consensus 108 K~v~L~~DR~IefHak~G~hy------------------------------------------~~-RIP~~GRDm~y~~~ 144 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAKYGRHY------------------------------------------RT-RIPKFGRDMKYHKP 144 (703)
T ss_pred hheEeecCceeeehhhcCeee------------------------------------------ee-ecCcCCccccccCC
Confidence 444445577776653321000 00 00122345666554
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
. .-|+.++....|+-++++.+. .+..+....+.++++..++ ...+|++|+.+|.|.+||.+. ...+..+.
T Consensus 145 s-cDly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~------ksrv~~l~ 214 (703)
T KOG2321|consen 145 S-CDLYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRD------KSRVGTLD 214 (703)
T ss_pred C-ccEEEeecCcceEEEEccccc--cccccccccccceeeeecC-ccceEEecccCceEEEecchh------hhhheeee
Confidence 4 234455555678888999888 6777777778999999999 899999999999999999998 44444443
Q ss_pred ------cccc-----eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 261 ------GHSA-----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 261 ------~~~~-----~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
.|.+ .|+++.|+.+|-. +++|..+|.+.|||++.... ++..-.+..-+|..+.|
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~~p--------------l~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRASKP--------------LLVKDHGYELPIKKLDW 279 (703)
T ss_pred cccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccCCc--------------eeecccCCccceeeecc
Confidence 2333 3999999998875 68999999999999998432 22223344568999999
Q ss_pred ccCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 330 NASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 330 ~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
.+.+. .-++++. ...++|||-. +|+++..+... ..++.+++
T Consensus 280 ~~~~~q~~v~S~D--------k~~~kiWd~~------~Gk~~asiEpt-~~lND~C~ 321 (703)
T KOG2321|consen 280 QDTDQQNKVVSMD--------KRILKIWDEC------TGKPMASIEPT-SDLNDFCF 321 (703)
T ss_pred cccCCCceEEecc--------hHHhhhcccc------cCCceeecccc-CCcCceee
Confidence 77632 2333322 2789999988 67777766533 23555544
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.2e-14 Score=115.96 Aligned_cols=212 Identities=17% Similarity=0.281 Sum_probs=157.1
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-EEEecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l~s~~~d 108 (387)
-.++|..++.. ...|++|-.+|.+.+|..+.+... ..+...+..+.+ +..+.-++...+ +++|+..
T Consensus 104 ~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~h--------ss~l~~la~g~g--~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 104 GTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLH--------SSKLIKLATGPG--LYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred ccccccchhhc---CCEEEEEecCCcEEEEeccCCccc--------cccceeeecCCc--eeeeccCCCCCceEecCchh
Confidence 34556666543 246888889999999999866211 144555665654 567777775554 5568888
Q ss_pred --CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--CCee
Q 016547 109 --KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQE 184 (387)
Q Consensus 109 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~ 184 (387)
..+.+||++............ ... ..+ .-.-.++++.|.+. . +.
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvp----------------------------nD~--L~L-rVPvW~tdi~Fl~g~~~-~~ 218 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVP----------------------------NDR--LGL-RVPVWITDIRFLEGSPN-YK 218 (412)
T ss_pred cccceeeeecccceeeeeccCCC----------------------------Ccc--ccc-eeeeeeccceecCCCCC-ce
Confidence 889999998753332211100 000 000 01235678888776 4 78
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-ecccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHS 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~ 263 (387)
|++++.-+.+++||.+.++.| +..+.-.+.+++++...| +++++++|..-|.+..||++. ++.... +++..
T Consensus 219 fat~T~~hqvR~YDt~~qRRP-V~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~t 290 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRP-VAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGIT 290 (412)
T ss_pred EEEEecceeEEEecCcccCcc-eeEeccccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCcc
Confidence 999999999999999988765 455566788999999999 999999999999999999998 666655 88889
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+.|.++..+|.++ ++|+++-|..+||+|+.+
T Consensus 291 Gsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 9999999999999 578999999999999998
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.5e-14 Score=124.06 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=139.8
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.+.+.+.+|+| +++.|+..+.+ ..|.+||+.++ +.. .+....+ .+....|+|||+.|+
T Consensus 191 l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g------------~~~-~l~~~~g-~~~~~~~SPDG~~la 255 (427)
T PRK02889 191 ALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATG------------RRR-VVANFKG-SNSAPAWSPDGRTLA 255 (427)
T ss_pred eccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCC------------CEE-EeecCCC-CccceEECCCCCEEE
Confidence 446788899999999 77777766532 45999999887 222 2222232 346889999999886
Q ss_pred -EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 104 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 104 -s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
+.+.+|...+|.++... .....+..+........|+|||.
T Consensus 256 ~~~~~~g~~~Iy~~d~~~---------------------------------------~~~~~lt~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 256 VALSRDGNSQIYTVNADG---------------------------------------SGLRRLTQSSGIDTEPFFSPDGR 296 (427)
T ss_pred EEEccCCCceEEEEECCC---------------------------------------CCcEECCCCCCCCcCeEEcCCCC
Confidence 56778887777764210 00122333444456678999995
Q ss_pred eeEEEecCCCeEEEEEcc--CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEeccCCCCCCCCceE
Q 016547 183 QEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~ 257 (387)
.++++...+|...+|.+. .+. ..............+|+| ++++++..+.++ .|.+||+.+ +.. .
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~------g~~-~ 365 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLAT------GQV-T 365 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCC------CCe-E
Confidence 555555556677777654 333 122222233345678999 999998877654 699999886 433 2
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
.+.. ........|+|+|+.|+.+....|. +.+.++.. . ....+..+.+.+...+|+|-
T Consensus 366 ~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g--~--------------~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 366 ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG--R--------------IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC--C--------------ceEEeecCCCCCCCCccCCC
Confidence 3322 2234678999999987766655554 44444432 1 12223445567777888873
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.7e-13 Score=120.70 Aligned_cols=238 Identities=11% Similarity=0.100 Sum_probs=144.7
Q ss_pred cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCccc
Q 016547 55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
.|.++|.+.. .. ..+..+.. .+....|+|||+.|+..+.+ ..|.+||+.++..
T Consensus 180 ~l~~~d~~g~------------~~-~~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---------- 235 (430)
T PRK00178 180 TLQRSDYDGA------------RA-VTLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------- 235 (430)
T ss_pred EEEEECCCCC------------Cc-eEEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE----------
Confidence 4777777655 22 33444444 57899999999998876543 3688888875422
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeEE
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV 209 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 209 (387)
..+....+.+....|+|+|..++++...+| .|.+||+.+++ ...
T Consensus 236 -------------------------------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~ 281 (430)
T PRK00178 236 -------------------------------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSR 281 (430)
T ss_pred -------------------------------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEE
Confidence 111122233456899999955555665555 58888998776 233
Q ss_pred eeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 210 EKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
+..+........|+| +++.++..+. +| .|.++|+.+ ++. ..+...........|+|+|++++.+...++
T Consensus 282 lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~------g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 282 VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG------GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC------CCE-EEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 444555567789999 8887766554 44 466666654 332 222211223345789999998765554444
Q ss_pred --eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547 287 --LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 364 (387)
Q Consensus 287 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~ 364 (387)
.|.+||+...... .+. +........|+|+|+.++.+...+ ....|.++++.
T Consensus 354 ~~~l~~~dl~tg~~~-------------~lt----~~~~~~~p~~spdg~~i~~~~~~~-----g~~~l~~~~~~----- 406 (430)
T PRK00178 354 NFHVAAQDLQRGSVR-------------ILT----DTSLDESPSVAPNGTMLIYATRQQ-----GRGVLMLVSIN----- 406 (430)
T ss_pred ceEEEEEECCCCCEE-------------Ecc----CCCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence 4778888764221 111 111222458999999888765432 22456777776
Q ss_pred ccchhhhhhhccCceEEEeeecC
Q 016547 365 PQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 365 ~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.....+..+.+.+...+|+|
T Consensus 407 --g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 --GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred --CCceEECcCCCCCcCCCccCC
Confidence 333344444556677777876
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=8.1e-14 Score=122.42 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=131.7
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
.+..|.+.+.+.+|+| +++.|+..+. +..|.+||+.++ .. ..+..+.+ .+....|+|||+.|
T Consensus 196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g------------~~-~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETG------------QR-ELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCC------------cE-EEeecCCC-cccCcEECCCCCEE
Confidence 3446888999999999 7777776643 468999999887 22 23444444 46688999999987
Q ss_pred E-EecCCCe--EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 103 L-SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 103 ~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+ +.+.++. |.+||+.++.. ..+..+........|+|
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-----------------------------------------TRLTDSPAIDTSPSYSP 299 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-----------------------------------------EEccCCCCccCceeEcC
Confidence 5 5555655 66667654321 22333444556789999
Q ss_pred CCCeeEEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCC
Q 016547 180 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 180 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~ 254 (387)
++..++++...+| .|+++|+..++ ...+..+...+....|+| +++.|+..+.+ ..|.+||+.. +
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~------~- 368 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG------S- 368 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC------C-
Confidence 9944444443444 57888877665 233333445567789999 99988877654 3577788753 2
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 295 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~ 295 (387)
....+. ....+....|+|||+.++.+.... ..+.++|+..
T Consensus 369 ~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 369 GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 233333 223467889999999876555433 2577777765
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.67 E-value=1.1e-13 Score=121.67 Aligned_cols=237 Identities=13% Similarity=0.140 Sum_probs=146.6
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 130 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~ 130 (387)
..|.++|.+.. . ...+..+.. .+....|+|||++|+.+..+ ..|.+||+.++..
T Consensus 170 ~~l~~~d~~g~------------~-~~~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--------- 226 (417)
T TIGR02800 170 YELQVADYDGA------------N-PQTITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--------- 226 (417)
T ss_pred ceEEEEcCCCC------------C-CEEeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------
Confidence 35777777544 2 233444444 57789999999999877643 4799999875421
Q ss_pred cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeE
Q 016547 131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 208 (387)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 208 (387)
..+..+...+.+++|+|++..++++.+.++ .|++||+.++. ..
T Consensus 227 --------------------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~ 271 (417)
T TIGR02800 227 --------------------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LT 271 (417)
T ss_pred --------------------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EE
Confidence 122233445667899999955556666554 58888988765 33
Q ss_pred EeeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547 209 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285 (387)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d 285 (387)
.+..+........|+| +++.|+..+. ++ .|.++|+.. ++ ...+..+...+....|+|++++++.+. .+
T Consensus 272 ~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~------~~-~~~l~~~~~~~~~~~~spdg~~i~~~~-~~ 342 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG------GE-VRRLTFRGGYNASPSWSPDGDLIAFVH-RE 342 (417)
T ss_pred ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEeecCCCCccCeEECCCCCEEEEEE-cc
Confidence 3444445556788999 8888876654 34 566677664 33 334444456677889999999765444 44
Q ss_pred C---eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547 286 G---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 286 ~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
+ .|.+||+...... .+... .......|+|++++++++...+ ....+.+.+..
T Consensus 343 ~~~~~i~~~d~~~~~~~----------------~l~~~-~~~~~p~~spdg~~l~~~~~~~-----~~~~l~~~~~~--- 397 (417)
T TIGR02800 343 GGGFNIAVMDLDGGGER----------------VLTDT-GLDESPSFAPNGRMILYATTRG-----GRGVLGLVSTD--- 397 (417)
T ss_pred CCceEEEEEeCCCCCeE----------------EccCC-CCCCCceECCCCCEEEEEEeCC-----CcEEEEEEECC---
Confidence 3 6888888763211 11111 1234568999999888766533 22456666655
Q ss_pred ccccchhhhhhhccCceEEEeeec
Q 016547 363 YRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 363 ~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
+.....+..+.+.+..++|+
T Consensus 398 ----g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 398 ----GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ----CceeeECCCCCCCcCCCCCC
Confidence 43444454444555555543
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.66 E-value=4.1e-12 Score=107.98 Aligned_cols=282 Identities=12% Similarity=0.176 Sum_probs=170.4
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecC----CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 96 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~ 96 (387)
.+.......-......++++| ++++|.+... +|.|..|++....... ..+........ .-..++++
T Consensus 26 ~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--------~~~~~~~~~g~-~p~~i~~~ 95 (345)
T PF10282_consen 26 TLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTL--------TLLNSVPSGGS-SPCHIAVD 95 (345)
T ss_dssp EEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEE--------EEEEEEEESSS-CEEEEEEC
T ss_pred CceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCccee--------EEeeeeccCCC-CcEEEEEe
Confidence 444444455566677888899 6666666654 6799999988651110 12222221222 23589999
Q ss_pred CCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 97 PTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 97 ~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
|++++|+++. .+|.|.++++............ ....+ . .+ ...+.......++
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~-~~~~g----------------------~--g~-~~~rq~~~h~H~v 149 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT-VRHEG----------------------S--GP-NPDRQEGPHPHQV 149 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE-EESEE----------------------E--ES-STTTTSSTCEEEE
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeee-cccCC----------------------C--CC-cccccccccceeE
Confidence 9999998876 4899999999863111100000 00000 0 00 0001123457889
Q ss_pred EEccCCCeeEEEecCCCeEEEEEccCCCCcee--EE-eeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCC
Q 016547 176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KV-EKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~ 251 (387)
.++|++..++++.-....|.+|++........ .. ........+.+.|+| +++++.+.. .++.|.++++.....
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g-- 226 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG-- 226 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--
Confidence 99999955555555667899999987652221 11 224456789999999 877765554 578899999983110
Q ss_pred CCCceEEeccc------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 252 VGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 252 ~~~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
..+.+..+... ......|+++|+|++|+++...++.|.+|++....... ..+...........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-----------~~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-----------TLVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-----------EEEEEEEESSSSEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-----------EEEEEEeCCCCCcc
Confidence 01222222211 12578899999999999888889999999995422111 22333333345579
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.++++|+|++|+++...+ +.|.+|+++
T Consensus 296 ~~~~s~~g~~l~Va~~~s-------~~v~vf~~d 322 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDS-------NTVSVFDID 322 (345)
T ss_dssp EEEE-TTSSEEEEEETTT-------TEEEEEEEE
T ss_pred EEEEeCCCCEEEEEecCC-------CeEEEEEEe
Confidence 999999999999866555 899999986
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=5.5e-14 Score=108.07 Aligned_cols=260 Identities=14% Similarity=0.148 Sum_probs=178.6
Q ss_pred CcEEEEEecC--CCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 32 GEVNRIRELP--QNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 32 ~~v~~i~~~~--~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
+.+..|.|.. .++. .++-+..+|.|.++.....+....+.+ +...+-... .-.++.|++.+..++++..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~------ls~~ki~~~-~~lslD~~~~~~~i~vs~s~ 142 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG------LSSKKISVV-EALSLDISTSGTKIFVSDSR 142 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc------cchhhhhhe-eeeEEEeeccCceEEEEcCC
Confidence 4456666653 3444 566677889999998776532222211 100000010 13478999999999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.+.+-+.... ..+..+.++.|.-+++..+|+...++++.+|
T Consensus 143 G~~~~v~~t~~--------------------------------------~le~vq~wk~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 143 GSISGVYETEM--------------------------------------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred CcEEEEeccee--------------------------------------eeeecccccccceeeeeeecccCCCceEEec
Confidence 99885444321 1222356788999999999998888999999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
+.|+.+..||++..+.-......-|...|.+|.-+|..+.++++|+.|-.|++||.|++ ++++..-. -.+.|..
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm-----~kPl~~~~-v~GGVWR 258 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM-----GKPLFKAK-VGGGVWR 258 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc-----cCccccCc-cccceEE
Confidence 99999999999955432334466789999999999878999999999999999999976 67766554 3588999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
+.++|.-...+..++.-+..+|-++........ ........|.+-+..-.|... ..++++|| .
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~----------~~~~s~~~hdSl~YG~DWd~~-~~~lATCs------F 321 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ----------IVLPSDKIHDSLCYGGDWDSK-DSFLATCS------F 321 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEecccccchh----------eeeeccccccceeeccccccc-cceeeeee------c
Confidence 999996543333444555578888876433210 234556778888888888655 34566653 4
Q ss_pred CCceEE-EEecC
Q 016547 349 GGGTLQ-IWRMS 359 (387)
Q Consensus 349 ~dg~i~-iw~~~ 359 (387)
.|+.++ +|-.-
T Consensus 322 YDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 322 YDKKIRQLWLHI 333 (339)
T ss_pred cccceeeeeeec
Confidence 557755 77554
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2e-13 Score=119.66 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=142.7
Q ss_pred cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-CC--eEEEEEcCCCcCccccCCCccc
Q 016547 55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
.+.++|.+.. .. ..+..+.. .+....|+|||+.|+..+. ++ .|.+||+.++...
T Consensus 199 ~l~i~d~dG~------------~~-~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------- 255 (448)
T PRK04792 199 QLMIADYDGY------------NE-QMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------- 255 (448)
T ss_pred EEEEEeCCCC------------Cc-eEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---------
Confidence 5666676554 22 22333333 5778999999999887653 33 5778887654211
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeEE
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKV 209 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~ 209 (387)
.+...........|+|+|..++++.+.+|. |.++|+.+++ ...
T Consensus 256 --------------------------------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~ 300 (448)
T PRK04792 256 --------------------------------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTR 300 (448)
T ss_pred --------------------------------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEE
Confidence 111112223467999999555566666775 7777887766 334
Q ss_pred eeccCCCeeEEEecCCCCCeEEEeeC-CCe--EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 210 EKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
+..+.......+|+| +++.++..+. ++. |.++|+.+ ++. ..+..........+|+|+|++++.+...++
T Consensus 301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~------g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS------GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CCE-EEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 444555667889999 8887776554 444 55556654 332 222212223345789999998776655555
Q ss_pred e--EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547 287 L--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 364 (387)
Q Consensus 287 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~ 364 (387)
. |.++|+...... . +... .......|+|+|+.++.+...+ ....+.+++.+
T Consensus 373 ~~~I~~~dl~~g~~~-------------~---lt~~-~~d~~ps~spdG~~I~~~~~~~-----g~~~l~~~~~~----- 425 (448)
T PRK04792 373 KFNIARQDLETGAMQ-------------V---LTST-RLDESPSVAPNGTMVIYSTTYQ-----GKQVLAAVSID----- 425 (448)
T ss_pred ceEEEEEECCCCCeE-------------E---ccCC-CCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence 4 444566553211 1 1111 1122447999999988766433 12346777765
Q ss_pred ccchhhhhhhccCceEEEeeecC
Q 016547 365 PQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 365 ~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.....+..+.+.+...+|+|
T Consensus 426 --G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 --GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCceEECcCCCCCcCCCccCC
Confidence 555566666667778888887
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=9.9e-13 Score=111.44 Aligned_cols=272 Identities=13% Similarity=0.160 Sum_probs=161.5
Q ss_pred eeeecCCCcEEE-EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 25 HKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 25 ~~~~~h~~~v~~-i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+...+.+.. +.|+| +++++.+++.||.|.++|+.+. +.+..+..-.. -..+++++||++++
T Consensus 29 ~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~------------~~v~~i~~G~~--~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATG------------KVVATIKVGGN--PRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSS------------SEEEEEE-SSE--EEEEEE--TTTEEE
T ss_pred EEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcc------------cEEEEEecCCC--cceEEEcCCCCEEE
Confidence 334444444444 56777 8888888899999999999999 66666666554 46999999999988
Q ss_pred Eec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 104 SGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 104 s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++. ..+.+.++|.++.+......... .........+.++..+|..+
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-TTTS---EEEEEE-SSSS
T ss_pred EEecCCCceeEeccccccceeeccccc---------------------------------ccccccCCCceeEEecCCCC
Confidence 765 68999999998653322111100 00001345677888888875
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCC------------
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTS------------ 249 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~------------ 249 (387)
.++++.-..+.|.+.|....+. ................|+| ++++++++ ..++.|-++|..+...
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~ 218 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP 218 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE
T ss_pred EEEEEEccCCeEEEEEeccccc-cceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccc
Confidence 5566666668898889877653 3333334456778899999 88877664 4456777777655210
Q ss_pred -------------------------------------CCCCCceEEeccccceEEEEEEcCCCCeeEEE---ecCCCeEE
Q 016547 250 -------------------------------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLN 289 (387)
Q Consensus 250 -------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s---~~~d~~i~ 289 (387)
...++.+.++.....+ .-+.-+|+++++.+. +...+.|.
T Consensus 219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~ 297 (369)
T PF02239_consen 219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQ 297 (369)
T ss_dssp TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEE
Confidence 0012233333333334 567779999998766 45678999
Q ss_pred EEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccch
Q 016547 290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE 368 (387)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~ 368 (387)
++|.++. .....+.. ....+..+.|+++|+++.+|.-+. ++.|.+||.. +.+
T Consensus 298 viD~~tl---------------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~------~~~i~v~D~~------Tl~ 350 (369)
T PF02239_consen 298 VIDKKTL---------------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG------NGAIVVYDAK------TLK 350 (369)
T ss_dssp EEECCGT---------------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--------TTEEEEEETT------TTE
T ss_pred EEECcCc---------------ceeEEEeccCCCcEeccEECCCCCEEEEEEecC------CCEEEEEECC------CcE
Confidence 9999985 22333322 223589999999999999876543 3499999999 566
Q ss_pred hhhhhh
Q 016547 369 VLAELE 374 (387)
Q Consensus 369 ~~~~~~ 374 (387)
.+.++.
T Consensus 351 ~~~~i~ 356 (369)
T PF02239_consen 351 EKKRIP 356 (369)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 665554
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=8.2e-15 Score=120.08 Aligned_cols=227 Identities=15% Similarity=0.201 Sum_probs=166.3
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
....|..|.+ .|+.+.|+..|..|++|+.|..|.+||.........
T Consensus 134 l~~kL~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--------------------------------- 179 (559)
T KOG1334|consen 134 LQKKLNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--------------------------------- 179 (559)
T ss_pred hhhcccCCCC-ccceeeecccCceeeccCccceEEeehhhccCcccc---------------------------------
Confidence 4456888998 899999999999999999999999999976543322
Q ss_pred CCCCceeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
-..+|...|....|.|. +...+++++.||.+++=.+..... .....+..|.++|..++..|.....|.+++.
T Consensus 180 ------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 180 ------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred ------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccccc
Confidence 22468888887788775 336799999999999877654332 2245566899999999999988899999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccc---eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSA---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 312 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 312 (387)
|+.+.-+|++.... ...+..-+.+.. ....++..|...+.||+++.|..+++||.+...+.........-.|..
T Consensus 254 D~~v~~~Dlr~~~p---a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h 330 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVP---AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH 330 (559)
T ss_pred ccceeeeeeccCCc---cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence 99999999997321 111222233333 578999999999889999999999999998865542221111111111
Q ss_pred eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 313 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
++. .....|++++|+.++.-++++.+++ .|+++.-
T Consensus 331 l~~---d~~v~ITgl~Ysh~~sElLaSYnDe--------~IYLF~~ 365 (559)
T KOG1334|consen 331 LVE---DDPVNITGLVYSHDGSELLASYNDE--------DIYLFNK 365 (559)
T ss_pred ccc---cCcccceeEEecCCccceeeeeccc--------ceEEecc
Confidence 111 2334799999999999999777665 7888853
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=9.8e-13 Score=111.48 Aligned_cols=271 Identities=9% Similarity=0.062 Sum_probs=158.4
Q ss_pred CcEE-EEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 44 TKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 44 ~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
++++ ++-..+|.|.+.|..+. +.+..+..... .-..+.++|||+++++++.||.|.++|+.+.+..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~------------~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v 71 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATN------------KVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV 71 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-------------SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred ccEEEEEecCCCEEEEEECCCC------------eEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence 3444 45567899999999988 67777776543 3346789999999999999999999999875432
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 202 (387)
..+.. .....+++++++|...+++....+.+.++|.++.
T Consensus 72 ----------------------------------------~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 72 ----------------------------------------ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp ----------------------------------------EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred ----------------------------------------EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence 33332 2346789999999555555567999999999887
Q ss_pred CCceeEEeec-------cCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547 203 TSPVIKVEKA-------HDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 274 (387)
Q Consensus 203 ~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (387)
+ .+..+.. ....+..+..+| ....++.. -+.+.|-+.|.... ..................|+|+
T Consensus 111 e--~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 111 E--PVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp ---EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TT
T ss_pred c--ceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcc
Confidence 7 4444332 234667787788 66645544 44588888887762 1122222223456778999999
Q ss_pred CCeeEEEecCCCeEEEEeCCCCCceeccCCCC----------------------------------------CCCCceee
Q 016547 275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----------------------------------------TNYPAGLF 314 (387)
Q Consensus 275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~ 314 (387)
+++++++...+..|-++|..+........... .....+.+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 99988777777889899887743322111000 00122344
Q ss_pred eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC-ceEEEeeecC
Q 016547 315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP 387 (387)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~f~P 387 (387)
..+....++ .-+.-+|+++++.+... .+...++|.++|.. +.+.+.++.... ..+..+.|+|
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~----~~~~~~~v~viD~~------tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTF----LNPDADTVQVIDKK------TLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-T----T-SSHT-EEEEECC------GTEEEE-HHHHHT--EEEEEE-T
T ss_pred EEEECCCCc-ceeecCCCCccEEeecc----CCCCCceEEEEECc------CcceeEEEeccCCCcEeccEECC
Confidence 444444445 67788999999987632 23345899999999 455555554222 2466666654
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.7e-13 Score=105.46 Aligned_cols=150 Identities=16% Similarity=0.311 Sum_probs=101.2
Q ss_pred EEEEecCCCCcEEE-EecC---------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 35 NRIRELPQNTKIVA-THTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 35 ~~i~~~~~~~~~l~-t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.|+| .|++|+ .... -|...+|.++... .+...+.-...++|.+++|+|+|+.+++
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-----------~~~~~i~l~~~~~I~~~~WsP~g~~fav 76 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-----------IPVESIELKKEGPIHDVAWSPNGNEFAV 76 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-----------CccceeeccCCCceEEEEECcCCCEEEE
Confidence 4567888 554444 3331 2345566654331 2344444433346999999999998654
Q ss_pred --ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 105 --GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 105 --~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
|..++.|.+||++.. ....-+...+..+.|+|+|
T Consensus 77 i~g~~~~~v~lyd~~~~-------------------------------------------~i~~~~~~~~n~i~wsP~G- 112 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVKGK-------------------------------------------KIFSFGTQPRNTISWSPDG- 112 (194)
T ss_pred EEccCCcccEEEcCccc-------------------------------------------EeEeecCCCceEEEECCCC-
Confidence 446789999999621 1122235677899999999
Q ss_pred eeEEEecC---CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC------CCeEEEEEec
Q 016547 183 QEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRR 245 (387)
Q Consensus 183 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~~~d~~ 245 (387)
+++++++. .|.|.+||+++.+ .+... .| ..++.++|+| +|++|++++. |+.++||+..
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~-~~-~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKKK--KISTF-EH-SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCCE--Eeecc-cc-CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 67777653 4679999999665 33333 23 4578999999 9999999875 6788999986
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.4e-12 Score=107.75 Aligned_cols=154 Identities=14% Similarity=0.321 Sum_probs=103.6
Q ss_pred EEEEccCCCeeEEEecC-----------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe--eCCCeEE
Q 016547 174 DVTFCPSSAQEFCSVGD-----------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVR 240 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~ 240 (387)
.+.|++-|..+|+.++. +.++++.++.... ........++|.++.|+| +++.++++ -.-..+.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVT 297 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEecCCCCCceEEEECC-CCCEEEEEEecccceEE
Confidence 45666665444444332 2356666666222 223334578999999999 88666654 4467899
Q ss_pred EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547 241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
|||++ +.++..+. +++-+++-|+|.|++++++|-. -|.|.|||+.+. +++..+.
T Consensus 298 ifnlr-------~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---------------K~i~~~~ 353 (566)
T KOG2315|consen 298 IFNLR-------GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---------------KLIAKFK 353 (566)
T ss_pred EEcCC-------CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch---------------hhccccc
Confidence 99999 78887775 5778899999999977655543 488999999984 2233333
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.. .-+-+.|+|||++++.+...- =--.|+.++||++.
T Consensus 354 a~--~tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 AA--NTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHYT 390 (566)
T ss_pred cC--CceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEec
Confidence 32 345678999999988542110 00247999999998
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=135.98 Aligned_cols=193 Identities=17% Similarity=0.317 Sum_probs=152.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
.|-..|.++.-+| ...+.+||+.||.|++|....+ ..+..++.-....|+.+.|+.+|+.+..+..|
T Consensus 2206 ~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~------------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHG------------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred cccCceeeecCCC-CCceEEecCCCceEEEEeccCC------------CeEEEeeccCcchhhhhhhcccCCceeeeccC
Confidence 3557789999888 6678889999999999999888 55555555444578999999999999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.+.+|.+.. ++....+.|.....++.|-. ..++++
T Consensus 2273 g~l~l~q~~p-----------------------------------------k~~~s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2273 GDLSLWQASP-----------------------------------------KPYTSWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred CceeecccCC-----------------------------------------cceeccccCCccccceeeee---hhhhcc
Confidence 9999999862 23355677888888888875 346665
Q ss_pred c---CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 189 G---DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 189 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
+ .++.+.+||........... ..|.+.++++++.| ..++|++|+.+|.|++||++. .+.++.++.
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~---- 2376 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA---- 2376 (2439)
T ss_pred ccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh----
Confidence 4 57889999976543222222 78999999999999 999999999999999999998 677766664
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+. ... .|++|+..|.|+||++...+
T Consensus 2377 -----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 -----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred -----hh-hhh-eeeccCcccceEEEEccccc
Confidence 33 333 57799999999999998863
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=2.9e-13 Score=104.14 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=159.7
Q ss_pred CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC---CCC-EEEEecCCCeEEEEEcCCCcCccccCC
Q 016547 52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEP-YVLSGGKDKSVVLWSIQDHITSSATDP 127 (387)
Q Consensus 52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~---~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~ 127 (387)
..|.+.++++...+... ...++....+.+..+.|.. +|. .++-+..+|.|.++............+
T Consensus 44 R~Gkl~Lys~~d~~~~~----------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ 113 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP----------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG 113 (339)
T ss_pred eccceEEEeecccccCc----------cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc
Confidence 34678899888773321 1222222222467888864 455 466677789999998764332222211
Q ss_pred CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee
Q 016547 128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 207 (387)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 207 (387)
+...+-......++.|++.+ ..++++..+|.+.+-+.........
T Consensus 114 ----------------------------------ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~v 158 (339)
T KOG0280|consen 114 ----------------------------------LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKV 158 (339)
T ss_pred ----------------------------------cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeec
Confidence 01111111135678888888 6688888899999766665553334
Q ss_pred EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 208 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
...+.|+-+.....|+..+.+++.+|++|+.+..||+|.+ ++.+.. .+.|...|.+|.-+|..++.+++|+.|.
T Consensus 159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-----~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe 233 (339)
T KOG0280|consen 159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-----KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE 233 (339)
T ss_pred ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC-----cceeeecceeeecceEEEecCCCCCceEEEecccc
Confidence 4778899999999999878899999999999999999953 344433 5678899999999987666788999999
Q ss_pred eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecCCCCCCCCCceEEEEecCC
Q 016547 287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.|++||.++.+++... ..-.+.|..+.++|.-.. ++++|.. +-.+|-++++
T Consensus 234 ~i~~~DtRnm~kPl~~---------------~~v~GGVWRi~~~p~~~~~lL~~CMh--------~G~ki~~~~~ 285 (339)
T KOG0280|consen 234 CIRVLDTRNMGKPLFK---------------AKVGGGVWRIKHHPEIFHRLLAACMH--------NGAKILDSSD 285 (339)
T ss_pred ceeeeehhcccCcccc---------------CccccceEEEEecchhhhHHHHHHHh--------cCceEEEecc
Confidence 9999999987665432 122378999999996543 3333322 3456666663
No 245
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=4.1e-14 Score=121.98 Aligned_cols=270 Identities=21% Similarity=0.390 Sum_probs=192.1
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC---EEE
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP---YVL 103 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~---~l~ 103 (387)
.+.-.+.+.++..+| .++-+|.++.-| +.+-|++..- .+-+.+..-+.-.|-.+.|+|... .++
T Consensus 20 sl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~-----------~ppr~l~h~tpw~vad~qws~h~a~~~wiV 86 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPF-----------TPPRWLHHITPWQVADVQWSPHPAKPYWIV 86 (1081)
T ss_pred EEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCC-----------CCceeeeccCcchhcceecccCCCCceeEE
Confidence 344578889999999 778888888776 6777887662 333333333333466788887543 344
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+.+ ...-.+|++.... .......+.+|...|+.+.|.|+.+.
T Consensus 87 sts-~qkaiiwnlA~ss-------------------------------------~~aIef~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 87 STS-NQKAIIWNLAKSS-------------------------------------SNAIEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred ecC-cchhhhhhhhcCC-------------------------------------ccceEEEEecCccceeccccCCCCCc
Confidence 444 4556689886421 11222566799999999999999989
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
.+++++-|-.+..||+++...+.. ....-...-..++|+..++..+| .+..+.|++||.+.. ..++..+++|-
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~p~y-s~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g-----s~pl~s~K~~v 201 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHRPFY-STSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG-----STPLCSLKGHV 201 (1081)
T ss_pred ceeeccccccceeeeccCCCccee-eeecccccCceeeecccCcchhh-hccCCceEEEeccCC-----CcceEEecccc
Confidence 999999999999999999885543 34444556789999985555554 466778999999985 68899999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-------------------------------------
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT------------------------------------- 306 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~------------------------------------- 306 (387)
..|+.++|+..-...+.+++.|++|+.||..+..+........
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~ 281 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL 281 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhh
Confidence 9999999987533345699999999999998744332211100
Q ss_pred ---CCCCceeeeeeccCCCCeeEEEEccC---------CCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 307 ---TNYPAGLFFQHAGHRDKVVDFHWNAS---------DPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 307 ---~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
.....+.+..+.||.+.|..+.|-.. ..+.+++-|.| .++++|-+.+.
T Consensus 282 e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD-------~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 282 EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD-------QTLRLWPIDSQ 341 (1081)
T ss_pred hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC-------CceEeeeccHH
Confidence 00134467788999999988888643 24677766655 89999999853
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.3e-12 Score=110.48 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=110.1
Q ss_pred CCeEEEEEccCCCeeEEEecCCC----eEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEE
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFD 243 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d 243 (387)
+.....+|+|||..++++...+| .+..|++..+.. ................+|+| +++.|+..+ .+|...+|.
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEE
Confidence 34456799999955555554333 345577665321 11222222223446789999 998777665 467666665
Q ss_pred eccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC--CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547 244 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 321 (387)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
+..... +.....+..+...+....|+|||+.|+.+...+ ..|.+||+...... .+....
T Consensus 310 ~~~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~----------------~Lt~~~ 370 (428)
T PRK01029 310 MQIDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY----------------QLTTSP 370 (428)
T ss_pred EECccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE----------------EccCCC
Confidence 432100 223344444445677899999999876555443 36899998874321 122223
Q ss_pred CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..+....|+|||++++++... .....|.+|++. .++. ..+....+.+...+|+|
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~------~g~~-~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGN-----SNESELYLISLI------TKKT-RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred CCccceEECCCCCEEEEEECC-----CCCceEEEEECC------CCCE-EEeecCCCcccCceecC
Confidence 356778999999998876542 234788999988 3332 22333344566667766
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.6e-13 Score=123.25 Aligned_cols=222 Identities=16% Similarity=0.227 Sum_probs=147.5
Q ss_pred CCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 155 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (387)
..+..+..|.. .|..++.++. +.++++||.||+|++|+.++-...
T Consensus 1039 ~lVAhL~Ehs~-~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------------------------------- 1084 (1431)
T KOG1240|consen 1039 ILVAHLHEHSS-AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------------------------------- 1084 (1431)
T ss_pred eEeehhhhccc-cccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------------------
Confidence 45677788887 4567777665 599999999999999999753221
Q ss_pred CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----eeEEeecc-CCCeeEE-EecCCCCC
Q 016547 156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAH-DADLHCV-DWNPLDDN 228 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~-~~~i~~~-~~~~~~~~ 228 (387)
....+...++......+.++...+.+ +.+|.++.||.|++.++...+.. ..+....+ .+.+.+| ++......
T Consensus 1085 ~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1085 GGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred cceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence 11222234444456788999999988 78999999999999998873211 11111111 2233333 34332344
Q ss_pred -eEEEeeCCCeEEEEEeccCCCCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547 229 -LILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 305 (387)
Q Consensus 229 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 305 (387)
.++.+..-+.|..||.++. .....+ ....+.|++++.+|.+.+ ++.|...|.+.+||++-. .+..
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~------~~~w~lk~~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~-~~i~---- 1231 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMR------HDAWRLKNQLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR-VPIL---- 1231 (1431)
T ss_pred eeEEEEEeccceEEecchhh------hhHHhhhcCccccceeEEEecCCceE-EEEecCCceEEEEEeecC-ceee----
Confidence 7888888899999999983 333222 234578999999999996 679999999999999973 2211
Q ss_pred CCCCCceeeeeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCC-CCceEEEEecCC
Q 016547 306 TTNYPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTG-GGGTLQIWRMSD 360 (387)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~-~dg~i~iw~~~~ 360 (387)
.-...+..++..+..+|-.+ ...+++ |. ..+.|.+|++..
T Consensus 1232 ---------sw~~P~~~~i~~v~~~~~~~~~S~~vs~------~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1232 ---------SWEHPARAPIRHVWLCPTYPQESVSVSA------GSSSNNEVSTWNMET 1274 (1431)
T ss_pred ---------cccCcccCCcceEEeeccCCCCceEEEe------cccCCCceeeeeccc
Confidence 11123446777777776544 333332 22 558999999983
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.5e-10 Score=92.44 Aligned_cols=300 Identities=11% Similarity=0.165 Sum_probs=186.0
Q ss_pred ceeeeeeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
.+...++..+.+.++-|+|+| +.+.|.++.. +|.|.-|.++...-...+. -...+.++. -.-+++++
T Consensus 29 ~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l------n~~~~~g~~---p~yvsvd~ 98 (346)
T COG2706 29 ELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL------NRQTLPGSP---PCYVSVDE 98 (346)
T ss_pred ccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe------eccccCCCC---CeEEEECC
Confidence 455566677889999999999 7777777744 5788888887531111110 011122332 25899999
Q ss_pred CCCEEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 98 TEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 98 ~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
+|++++++.. -|.|.++-+++.-........ ..-....+ . .+..+..+....
T Consensus 99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-------------------------~~h~g~~p-~-~rQ~~~h~H~a~ 151 (346)
T COG2706 99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-------------------------VKHTGSGP-H-ERQESPHVHSAN 151 (346)
T ss_pred CCCEEEEEEccCceEEEEEcccCCccccceee-------------------------eecCCCCC-C-ccccCCccceee
Confidence 9999998874 588999988652111100000 00000000 0 011122377888
Q ss_pred EccCCCeeEEEec-CCCeEEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCC
Q 016547 177 FCPSSAQEFCSVG-DDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 177 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~ 253 (387)
+.|++ +++++.. .--.|.+|++..+...... .........+-|.|+| ++++..+..+ +++|-+|..... .
T Consensus 152 ~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~-----~ 224 (346)
T COG2706 152 FTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPA-----V 224 (346)
T ss_pred eCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCC-----C
Confidence 99999 5555543 4457999999976632111 1123456678999999 8887776665 899999998863 1
Q ss_pred CceEEeccc---------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547 254 SPINKFEGH---------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324 (387)
Q Consensus 254 ~~~~~~~~~---------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (387)
..+..++.+ ......|..+++|++|.|+--....|.+|.+...+... ..+.....+....
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L-----------~~~~~~~teg~~P 293 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL-----------ELVGITPTEGQFP 293 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-----------EEEEEeccCCcCC
Confidence 223333221 23567889999999988776667789999988754432 2334444455567
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEeeec
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK 386 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~f~ 386 (387)
..+.|++.+++|+++.-+. ..|.+|.++.. +|++-.... .......||.|.
T Consensus 294 R~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~~----TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 294 RDFNINPSGRFLIAANQKS-------DNITVFERDKE----TGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ccceeCCCCCEEEEEccCC-------CcEEEEEEcCC----CceEEecccccCCCCcEEEEEc
Confidence 8999999999998755443 78999999842 454433222 233345566664
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.7e-12 Score=109.34 Aligned_cols=196 Identities=20% Similarity=0.289 Sum_probs=151.8
Q ss_pred CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC------C--------------CCC
Q 016547 41 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC------P--------------TEP 100 (387)
Q Consensus 41 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~------~--------------~~~ 100 (387)
|+...++|....||.++|||...+....++ .+...+.+- .++..|. | +..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------~p~~~~s~t----~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF------APIASLSGT----CTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeee------ccchhccCc----ceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 446789999999999999999988543332 222222221 1233331 1 233
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
.++-|...|.|.+|++..+..... ..-..|.+.|.++.++.+
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~--------------------------------------~st~~h~~~v~~~~~~~~ 113 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAK--------------------------------------LSTDKHYGNVNEILDAQR 113 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEE--------------------------------------EecCCCCCcceeeecccc
Confidence 567777788888888876543221 122478999999999888
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
- ..|.+++.|+.+..|+..... ...........+.+++++| ++..+++++ +.|++||+++ .+.+..|.
T Consensus 114 ~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~------kevv~~ft 181 (541)
T KOG4547|consen 114 L-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIET------KEVVITFT 181 (541)
T ss_pred c-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccC------ceEEEEec
Confidence 7 789999999999999998887 6777778888999999999 899999876 7899999999 99999999
Q ss_pred cccceEEEEEEcCC-----CCeeEEEecCCCeEEEEeCCCC
Q 016547 261 GHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 261 ~~~~~i~~~~~~~~-----~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+|.++|.++.|--+ |.++|.+...+..|.+|-++..
T Consensus 182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999999877 7888877778888999988774
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.3e-13 Score=113.99 Aligned_cols=210 Identities=12% Similarity=0.229 Sum_probs=154.1
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEE
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 114 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vw 114 (387)
..|+++...-.+++.|+. ..|+=++++.+ +.+..+....+ .++++..++-..+|++|+.+|.|.+|
T Consensus 137 RDm~y~~~scDly~~gsg-~evYRlNLEqG------------rfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQG------------RFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred ccccccCCCccEEEeecC-cceEEEEcccc------------ccccccccccc-cceeeeecCccceEEecccCceEEEe
Confidence 456677656666666554 46888899988 56666665555 68999999999999999999999999
Q ss_pred EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeE
Q 016547 115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 194 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 194 (387)
|.+.............. ...........|+++.|..+| -.+++|..+|.+
T Consensus 203 DpR~ksrv~~l~~~~~v-----------------------------~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v 252 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSV-----------------------------NSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSV 252 (703)
T ss_pred cchhhhhheeeeccccc-----------------------------CCCccccccCcceEEEecCCc-eeEEeeccCCcE
Confidence 99876443322221000 000011123459999999887 889999999999
Q ss_pred EEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547 195 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 274 (387)
Q Consensus 195 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (387)
.|||+++.+ |....-....-+|..+.|.+.+.+--+.......++|||-.+ +++...++. ...++.+++-|+
T Consensus 253 ~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~------Gk~~asiEp-t~~lND~C~~p~ 324 (703)
T KOG2321|consen 253 LIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT------GKPMASIEP-TSDLNDFCFVPG 324 (703)
T ss_pred EEEEcccCC-ceeecccCCccceeeecccccCCCceEEecchHHhhhccccc------CCceeeccc-cCCcCceeeecC
Confidence 999999987 344444555678999999884444444445667899999999 899988885 445999999999
Q ss_pred CCeeEEEecCCCeEEEEeCCCCC
Q 016547 275 KSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 275 ~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+.. +.++-+++.+..|=+...+
T Consensus 325 sGm-~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 325 SGM-FFTANESSKMHTYYIPSLG 346 (703)
T ss_pred Cce-EEEecCCCcceeEEccccC
Confidence 884 5588888989888887654
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.2e-12 Score=111.30 Aligned_cols=201 Identities=10% Similarity=0.083 Sum_probs=123.1
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+...+...+|+| +++.|+..+.+ ..|.+||+.+++ .. .+....+ .+....|+|||++|
T Consensus 193 ~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~------------~~-~l~~~~g-~~~~~~~SpDG~~l 257 (430)
T PRK00178 193 TLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGR------------RE-QITNFEG-LNGAPAWSPDGSKL 257 (430)
T ss_pred EEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCC------------EE-EccCCCC-CcCCeEECCCCCEE
Confidence 3446778899999999 77777665433 368999998772 11 1222222 24478999999988
Q ss_pred E-EecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 103 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 103 ~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+ +.+.+| .|.+||+.++.. ..+..+........|+|
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL-----------------------------------------SRVTNHPAIDTEPFWGK 296 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe-----------------------------------------EEcccCCCCcCCeEECC
Confidence 7 444555 577778765421 11222333455678999
Q ss_pred CCCeeEEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-C--eEEEEEeccCCCCCCCC
Q 016547 180 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N--SVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 180 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~ 254 (387)
++..++++...+| .|+++|+.+++. ..+...........|+| +++.++..+.+ + .|.++|+.+ +.
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t------g~ 366 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR------GS 366 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC------CC
Confidence 9955555554444 477777776662 12211222334578999 88888877653 3 577888876 33
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE 294 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~ 294 (387)
. ..+.. ........|+|+|+.++.+...++. |.++++.
T Consensus 367 ~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 367 V-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred E-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2 22221 1222356899999987766655544 5555654
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=4.4e-12 Score=111.68 Aligned_cols=201 Identities=12% Similarity=0.160 Sum_probs=127.4
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.++..+.+.+...+|+| +++.|+.+..+ ..|++||+.++ +. ..+..+.. .+.++.|+|||+.
T Consensus 183 ~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g------------~~-~~~~~~~~-~~~~~~~spDg~~ 247 (417)
T TIGR02800 183 QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATG------------QR-EKVASFPG-MNGAPAFSPDGSK 247 (417)
T ss_pred EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCC------------CE-EEeecCCC-CccceEECCCCCE
Confidence 34445777899999999 77888776543 47999999877 22 22333333 3567899999997
Q ss_pred EE-EecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 102 VL-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 102 l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
|+ +.+.++ .|.+||+.++.. ..+..+........|+
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-----------------------------------------TRLTNGPGIDTEPSWS 286 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-----------------------------------------EECCCCCCCCCCEEEC
Confidence 76 444444 577888765321 1122233334456899
Q ss_pred cCCCeeEEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEeccCCCCCCC
Q 016547 179 PSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVG 253 (387)
Q Consensus 179 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~ 253 (387)
|++..++++...++ .|.++|+.+++ ...+..+........|+| ++++++.++.++ .|.+||+.+ +
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~------~ 356 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDG------G 356 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCC------C
Confidence 99844444544444 57777877665 233334556677889999 899998888776 788888875 3
Q ss_pred CceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeC
Q 016547 254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDY 293 (387)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~ 293 (387)
.. ..+... .......|+|++++|+++...++. +.+.+.
T Consensus 357 ~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 357 GE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred Ce-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 22 222221 223456899999987655554443 444443
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.9e-12 Score=109.08 Aligned_cols=211 Identities=12% Similarity=0.132 Sum_probs=150.2
Q ss_pred CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
|...++|....||.+++|+..+.+....+.+.......+..... . ...........++.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w--------------~-------L~~~~s~~k~~~~~ 61 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW--------------G-------LSADYSPMKWLSLE 61 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE--------------E-------EEeccchHHHHhHH
Confidence 45678999999999999999887655444442111111110000 0 00000000011111
Q ss_pred Ec---cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC
Q 016547 177 FC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 177 ~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 253 (387)
+. ..+...++-|...|.|.+|++..++......-..|.+.|+++.++. +-..|.+++.|+.+..|+... .
T Consensus 62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~------~ 134 (541)
T KOG4547|consen 62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE------K 134 (541)
T ss_pred HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc------c
Confidence 10 1122467888899999999999988332333357999999999998 899999999999999999998 8
Q ss_pred CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC-
Q 016547 254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS- 332 (387)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 332 (387)
+.++.++.-...+.+++.+||+.. +++++ +.|++||+++. +.+..+.||.++|.++.|-.+
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~-l~~as--~~ik~~~~~~k---------------evv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKI-LLTAS--RQIKVLDIETK---------------EVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCE-EEecc--ceEEEEEccCc---------------eEEEEecCCCcceEEEEEEEec
Confidence 888999888889999999999984 55664 78999999986 568889999999999999887
Q ss_pred ----CCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 333 ----DPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 333 ----~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
|.+++.+ ...+.-+.+|-+..
T Consensus 197 ~g~~G~~vLss-------a~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSS-------AAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeec-------cccccceeEEEEEc
Confidence 7788863 33446788887763
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6.9e-12 Score=110.09 Aligned_cols=220 Identities=11% Similarity=0.092 Sum_probs=129.1
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecC-CC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+...+.+..|+| +++.|+..+. ++ .|.+||+.+++ .. .+....+ ......|+|||+.|+.
T Consensus 214 ~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~------------~~-~lt~~~g-~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 214 LRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQV------------RE-KVTSFPG-INGAPRFSPDGKKLAL 278 (448)
T ss_pred ecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCC------------eE-EecCCCC-CcCCeeECCCCCEEEE
Confidence 34566788999999 7777766543 33 58888988762 21 1211121 2347899999998764
Q ss_pred -ecCCCe--EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 105 -GGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 105 -~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
.+.++. |.++|+.++.. ..+..+........|+|++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~-----------------------------------------~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKAL-----------------------------------------TRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred EEeCCCCeEEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCCC
Confidence 455665 66667654321 2222333445678999999
Q ss_pred CeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCce
Q 016547 182 AQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 182 ~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~ 256 (387)
..++++...++. |.++|+.+++. ..+..........+|+| ++++++..+. ++ .|.++|+.+ +..
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~------g~~- 386 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET------GAM- 386 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC------CCe-
Confidence 555555555554 66667766652 22222222334578999 8888877665 34 345566655 332
Q ss_pred EEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
..+... .......|+|+|+.++.+...++. +.+++.... ....+..+.+.+...+|+|
T Consensus 387 ~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~----------------~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 387 QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR----------------FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEECcCCCCCcCCCccCC
Confidence 222221 112245799999987766666654 566665432 1222344455667778887
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=2.4e-12 Score=101.40 Aligned_cols=204 Identities=14% Similarity=0.175 Sum_probs=144.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
.+.+++++.|.+ +.+.|..|-..|++.-+.+...-+.. ...+....|.. .|..+-|+-....+++++.|.
T Consensus 67 mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm--------~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 67 MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKM--------TFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhc--------chhhhhhhhhc-ceeeEEecCCceeEEEecccc
Confidence 468899999999 88899999999999988776542211 34455677877 789999999899999999998
Q ss_pred eEEEEEcCCCcCccccCCCccc-CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 110 SVVLWSIQDHITSSATDPATAK-SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
.+.---.+.+.....+...... .............................++..+.+|.+.+.+++|.|.. .++++|
T Consensus 137 ~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg 215 (404)
T KOG1409|consen 137 QFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSG 215 (404)
T ss_pred ceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEec
Confidence 7765444444332222111110 00000011111112222222223344556778889999999999999987 899999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
..|..+.+||+--.+. ......+|...|..+...+ .-..+.+++.||.|-+||++.
T Consensus 216 ~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence 9999999999976553 4566778999999999988 788999999999999999875
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.4e-12 Score=111.00 Aligned_cols=288 Identities=13% Similarity=0.208 Sum_probs=191.8
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcc---cccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH---AVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
+..+....|++|+. ...++|+|+.||.+++-.+.+..... .+....+-...+++.||.. .|..+.|+.+.+.|-+
T Consensus 11 iPnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWNENNQKLTT 88 (1189)
T ss_pred CCCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEeccccccccc
Confidence 34567789999999 78899999999999999887653321 2222333345678999998 6899999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
...+|.|.+|-+-++.-... ..-...++-|.+++|..+| ..
T Consensus 89 SDt~GlIiVWmlykgsW~EE--------------------------------------MiNnRnKSvV~SmsWn~dG-~k 129 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEE--------------------------------------MINNRNKSVVVSMSWNLDG-TK 129 (1189)
T ss_pred cCCCceEEEEeeecccHHHH--------------------------------------HhhCcCccEEEEEEEcCCC-cE
Confidence 99999999998876532111 1112345679999999999 77
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC-CCceEE----e
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GSPINK----F 259 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~----~ 259 (387)
+...-.||.|.+=.++..+ +............+.|++ +...++.+-..|.+.+||.......+. ..+... +
T Consensus 130 IcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~ 205 (1189)
T KOG2041|consen 130 ICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF 205 (1189)
T ss_pred EEEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence 8888899999887776543 111111223345788999 888888888999999999764211000 011111 1
Q ss_pred ccccceEEEEEEc--------CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 260 EGHSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 260 ~~~~~~i~~~~~~--------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
......|-.+.|. |+.+. ||.+-.+|.+.|-.-.+...+ .+.. . .-.+.+..|++
T Consensus 206 s~~~~kia~i~w~~g~~~~v~pdrP~-lavcy~nGr~QiMR~eND~~P-------------vv~d-t--gm~~vgakWnh 268 (1189)
T KOG2041|consen 206 SNFPTKIAEIEWNTGPYQPVPPDRPR-LAVCYANGRMQIMRSENDPEP-------------VVVD-T--GMKIVGAKWNH 268 (1189)
T ss_pred cCCCccccceeeccCccccCCCCCCE-EEEEEcCceehhhhhcCCCCC-------------eEEe-c--ccEeecceecC
Confidence 1112234455553 46664 678888999888765553322 1211 1 24688999999
Q ss_pred CCCeEEEEecCCCC--CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 332 SDPWTVVSVSDDCD--STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 332 ~~~~l~~s~s~d~~--tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
+|..|++. +.|.. .-...+.|.+|..- |+.+.+++.....|+++.|
T Consensus 269 ~G~vLAvc-G~~~da~~~~d~n~v~Fysp~-------G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 269 NGAVLAVC-GNDSDADEPTDSNKVHFYSPY-------GHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred CCcEEEEc-cCcccccCccccceEEEeccc-------hhheEEEecCCceeeeeEE
Confidence 99876653 33210 11112466666654 8888888888888888876
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=4.3e-12 Score=98.79 Aligned_cols=308 Identities=14% Similarity=0.194 Sum_probs=172.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----------CceEEEEECC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCP 97 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~~v~~~~~~~ 97 (387)
...+.|+++.|-. .|.+|+||...|.|.++.-+.... .+.+....+++|.- ..|..|.|..
T Consensus 24 tead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~-------ceykf~teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 24 TEADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYG-------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cccceeeEEEecc-ccceEeecCCCceEEEeecccccc-------cchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence 3567799999988 899999999999999998665421 11123334444432 1478888877
Q ss_pred CCC--EEEEecCCCeEEEEEcCCCcCccccCCC--cccCCCCCCceeccCCCCCCCCCCC-CCCCCCCCceee-cCCCCC
Q 016547 98 TEP--YVLSGGKDKSVVLWSIQDHITSSATDPA--TAKSAGSSGSIIKQSPKPGDGNDKA-ADGPSVGPRGIY-NGHEDT 171 (387)
Q Consensus 98 ~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 171 (387)
++. .++..+.|++|++|.+............ ........+.+. ............ .......+.+.+ ..|.-.
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~-s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT-STKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcC-CHHHhhcccccccceEEEeccceeccccceeE
Confidence 643 3555567999999999765322111110 000000000000 000000000000 000011222333 578888
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-eeEEeeccC-----CCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHD-----ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
|.++.+..+. ..++++ .|-.|.+|++.-.... .+....+|. .-|++..|+|...+.+.-.+..|.|++-|+|
T Consensus 175 iNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 9999999887 556554 6789999998764421 122233333 3578889999777888888999999999999
Q ss_pred cCCCCCCCCceE----------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 246 NLTSNGVGSPIN----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 246 ~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
...-......+. -+..-...|..+.|+++|++++ +- .--+++|||++....+....+........+..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Ee-ccceEEEEecccccCCceeechHHHHHHHHHh
Confidence 521100011111 1122235688999999999754 44 35689999999876554322110000000000
Q ss_pred eeccCCCCe---eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 316 QHAGHRDKV---VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 316 ~~~~~~~~v---~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
. . ....| ..+.|+-+...++ +|+..+..-+|-..
T Consensus 331 ~-Y-EnDaifdkFeisfSgd~~~v~--------sgsy~NNfgiyp~~ 367 (460)
T COG5170 331 V-Y-ENDAIFDKFEISFSGDDKHVL--------SGSYSNNFGIYPTD 367 (460)
T ss_pred h-h-hccceeeeEEEEecCCccccc--------ccccccceeeeccc
Confidence 0 0 01122 3466777776666 66666666666643
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=4e-12 Score=113.88 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=144.4
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC
Q 016547 92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 171 (387)
Q Consensus 92 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (387)
...+..+.+.++.+..+..+.+||............ . .+.-...
T Consensus 92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------------------~-----er~~l~~ 135 (967)
T KOG0974|consen 92 GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------------------D-----ERCTLYS 135 (967)
T ss_pred ccchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------------------C-----ceEEEEe
Confidence 344555677888888899999999876432211100 0 0000011
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
..-+..+++. -++++|+--+.|.+|+....+.+. .+.+|.+.|.++.++- +++++++.|+|+.+|+|++.+
T Consensus 136 ~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s----- 206 (967)
T KOG0974|consen 136 SLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDS----- 206 (967)
T ss_pred EEEEeccCcE-EEEEeccccccEEEEeccccCCcc--eecccCCceEEEEEcc-CCcEEEEEecCcceeeeeccc-----
Confidence 2223345554 789999999999999998554332 5779999999999999 999999999999999999998
Q ss_pred CCCceE-EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC-CeeEEEE
Q 016547 252 VGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHW 329 (387)
Q Consensus 252 ~~~~~~-~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 329 (387)
.+... ..-+|...|..+.|.|+ . +++++.|.+.++|+.... .+..+.+|.. .+..++.
T Consensus 207 -~~~~~~~~fgHsaRvw~~~~~~n--~-i~t~gedctcrvW~~~~~----------------~l~~y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 207 -REVLGCTGFGHSARVWACCFLPN--R-IITVGEDCTCRVWGVNGT----------------QLEVYDEHSGKGIWKIAV 266 (967)
T ss_pred -ccccCcccccccceeEEEEeccc--e-eEEeccceEEEEEecccc----------------eehhhhhhhhcceeEEEE
Confidence 44333 56679999999999998 3 579999999999976652 2334556654 7899998
Q ss_pred ccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
.++....+ |++.|+.+++|++...
T Consensus 267 ~~~~~~~v--------T~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 267 PIGVIIKV--------TGGNDSTLKLWDLNGR 290 (967)
T ss_pred cCCceEEE--------eeccCcchhhhhhhcc
Confidence 88666555 7888899999998743
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=1.2e-09 Score=93.04 Aligned_cols=264 Identities=9% Similarity=0.135 Sum_probs=154.9
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC----CCeEEEEEcCCCcCccccCCCc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----DKSVVLWSIQDHITSSATDPAT 129 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~ 129 (387)
+.|.+|+++...... ..+.....-. .-..++++|++++|.+... ++.|..|++.....
T Consensus 13 ~gI~~~~~d~~~g~l--------~~~~~~~~~~--~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------- 74 (345)
T PF10282_consen 13 GGIYVFRFDEETGTL--------TLVQTVAEGE--NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------- 74 (345)
T ss_dssp TEEEEEEEETTTTEE--------EEEEEEEESS--SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--------
T ss_pred CcEEEEEEcCCCCCc--------eEeeeecCCC--CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--------
Confidence 689999884441111 1122222222 2357899999999988765 57999999875310
Q ss_pred ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-eeE
Q 016547 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIK 208 (387)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~ 208 (387)
....+............++++|++..++++.-.+|.|.++++...... ...
T Consensus 75 ----------------------------~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 75 ----------------------------TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp ----------------------------EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred ----------------------------eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 001111222123345578999999555555557999999999874211 111
Q ss_pred Eee-----------ccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCc--eEEec-cccceEEEEEEcC
Q 016547 209 VEK-----------AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP--INKFE-GHSAAVLCVQWSP 273 (387)
Q Consensus 209 ~~~-----------~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~--~~~~~-~~~~~i~~~~~~~ 273 (387)
... .......++.++| +++++++... ...|.+|++.... ++. ...+. ........++|+|
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-T
T ss_pred eecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcC
Confidence 111 1234578999999 8888877654 4579999998632 112 12222 2345678999999
Q ss_pred CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-c--CCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547 274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGG 350 (387)
Q Consensus 274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d 350 (387)
+++++++..-.++.|.++++......... .+.+..+. + .......++++|++++|.++...+
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~------- 266 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTE--------IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS------- 266 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEE--------EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeE--------EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------
Confidence 99999888889999999999832211110 01111111 1 112678999999999999866544
Q ss_pred ceEEEEecCCCcccccch--hhhhhhccCceEEEeeecC
Q 016547 351 GTLQIWRMSDLIYRPQDE--VLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 351 g~i~iw~~~~~~~~~~~~--~~~~~~~~~~~v~~~~f~P 387 (387)
++|.+|+++.. ++. .+..+......-+.++|+|
T Consensus 267 ~sI~vf~~d~~----~g~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 267 NSISVFDLDPA----TGTLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp TEEEEEEECTT----TTTEEEEEEEEESSSSEEEEEE-T
T ss_pred CEEEEEEEecC----CCceEEEEEEeCCCCCccEEEEeC
Confidence 89999999521 122 2223333333456666654
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=5.4e-12 Score=113.11 Aligned_cols=190 Identities=19% Similarity=0.317 Sum_probs=145.9
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC---ceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN---AEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 119 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 119 (387)
+...++.++.+..+.+||........+ ....... ...-+.++++.-++++|+.-+.|.+|+....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~------------i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSK------------IQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehh------------cCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 455777778888999999887632221 1111110 1123445667779999999999999998621
Q ss_pred cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEc
Q 016547 120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 199 (387)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 199 (387)
..+ ..+.+|.+.|..+.|+.+| .++++.+.|..+++|++
T Consensus 166 ---------------------------------------n~p-~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 166 ---------------------------------------NKP-IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPI 204 (967)
T ss_pred ---------------------------------------CCc-ceecccCCceEEEEEccCC-cEEEEEecCcceeeeec
Confidence 011 1568999999999999999 89999999999999999
Q ss_pred cCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-ceEEEEEEcCCCCee
Q 016547 200 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSV 278 (387)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l 278 (387)
++.+... ...-+|...+..+++.| . .+++++.|-+.++|+.. +..+..+..|. ..|..++..++.. +
T Consensus 205 ~s~~~~~-~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~ 272 (967)
T KOG0974|consen 205 DSREVLG-CTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-I 272 (967)
T ss_pred ccccccC-cccccccceeEEEEecc-c--eeEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-E
Confidence 9988433 34558999999999998 4 99999999999999776 56666787775 4588999888776 5
Q ss_pred EEEecCCCeEEEEeCCCCC
Q 016547 279 FGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 279 l~s~~~d~~i~vwd~~~~~ 297 (387)
.++++.|+.+++||+....
T Consensus 273 ~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEeeccCcchhhhhhhccc
Confidence 6799999999999987643
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=3.5e-12 Score=100.51 Aligned_cols=246 Identities=14% Similarity=0.188 Sum_probs=149.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.|.++.|...|.+|++|..+|.|.++.-...... .+..... .....+...-+..+ .-
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~---------------------fqshepEFDYLkSl-ei 83 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTE---------------------FQSHEPEFDYLKSL-EI 83 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeee---------------------eeccCcccchhhhh-hh
Confidence 6899999999999999999999999975432210 0000000 00000001111111 11
Q ss_pred CCCeEEEEEccCCC-eeEEEecCCCeEEEEEccCCCCce----------------------------------eEEeecc
Q 016547 169 EDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPV----------------------------------IKVEKAH 213 (387)
Q Consensus 169 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------~~~~~~~ 213 (387)
...|..+.|.++++ ..++..+.|.+|++|.++...... ...-..|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35688999988752 467777899999999886542111 0011356
Q ss_pred CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-----cceEEEEEEcCCCCeeEEEecCCCeE
Q 016547 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLL 288 (387)
Q Consensus 214 ~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ll~s~~~d~~i 288 (387)
.-.|+++.++. +...++++ +|=.|.+|++.-... .-.+.-++.+ ..-|++..|+|..-.+|+-.+..|.|
T Consensus 164 tyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~---sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 164 TYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQ---SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred eeEeeeeeecC-ccceEeec-cceeeeeccccccCC---ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 77789999998 78777765 677899999885321 1223333333 35689999999877788888889999
Q ss_pred EEEeCCCCCceeccCC-CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc
Q 016547 289 NIWDYEKVGKKVEQGP-RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367 (387)
Q Consensus 289 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~ 367 (387)
++-|++.......... ......+.-..-+.+--..|.++.|+++|+|++. .| . -+|++||++- ..
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils---RD-----y-ltvk~wD~nm-----e~ 304 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS---RD-----Y-LTVKLWDLNM-----EA 304 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE---ec-----c-ceeEEEeccc-----cC
Confidence 9999995322111000 0000000111112223357899999999999882 11 1 7999999963 34
Q ss_pred hhhhhhhcc
Q 016547 368 EVLAELEKF 376 (387)
Q Consensus 368 ~~~~~~~~~ 376 (387)
+++.+.+.|
T Consensus 305 ~pv~t~~vh 313 (433)
T KOG1354|consen 305 KPVETYPVH 313 (433)
T ss_pred CcceEEeeh
Confidence 455555444
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-10 Score=97.40 Aligned_cols=298 Identities=16% Similarity=0.217 Sum_probs=176.5
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCC-----------CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-c
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDS-----------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-A 89 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~ 89 (387)
+...+.+.|++ |.-+.|+| +.+||+|-+.. ..++|||+.++. ..+.+....+. .
T Consensus 241 f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~------------lkrsF~~~~~~~~ 306 (698)
T KOG2314|consen 241 FDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL------------LKRSFPVIKSPYL 306 (698)
T ss_pred HHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccc------------hhcceeccCCCcc
Confidence 34455566776 78899999 88999987542 478999999994 33333331111 1
Q ss_pred e-EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc-----cCCCcccCCCCCCceeccCCCCCC--CCCCCCCCCCCCC
Q 016547 90 E-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-----TDPATAKSAGSSGSIIKQSPKPGD--GNDKAADGPSVGP 161 (387)
Q Consensus 90 v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 161 (387)
+ .-..||.|++|+|--.. .+|.|++......... ..............+........+ ..+.+...++.+.
T Consensus 307 ~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~ 385 (698)
T KOG2314|consen 307 KWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE 385 (698)
T ss_pred ccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce
Confidence 2 24689999999997665 5789998765321111 111111222222233333333222 2223334444444
Q ss_pred ceeecCCCCCeEEEEEccCCCeeEEE----------ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE
Q 016547 162 RGIYNGHEDTVEDVTFCPSSAQEFCS----------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 231 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 231 (387)
++...-+.-.=..+.|-.+| .+|+. .+.-..+-|+.++....+.... .-...|...+|.| .|+.++
T Consensus 386 iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP-~gdkF~ 461 (698)
T KOG2314|consen 386 IRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEP-HGDKFA 461 (698)
T ss_pred eeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeecc-CCCeEE
Confidence 44433333222345566666 34432 1222346677777666433222 3456889999999 777776
Q ss_pred EeeC---CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCC
Q 016547 232 TGSA---DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRT 306 (387)
Q Consensus 232 ~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~ 306 (387)
+-+. ..++.+|-..+.. .....+..+.. ...+.+.|+|.|+++++.+ |..|.+..+|+......
T Consensus 462 vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k------- 530 (698)
T KOG2314|consen 462 VISGNTVKNTVSFYAVETNI--KKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK------- 530 (698)
T ss_pred EEEccccccceeEEEeecCC--Cchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhh-------
Confidence 6554 3578999888421 11344445542 5568899999999865443 45889999999852111
Q ss_pred CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
......| ...+.+.|.|.|+|++.+.+.- ....|.--+||++.
T Consensus 531 -------~~~~~eh-~~at~veWDPtGRYvvT~ss~w--rhk~d~GYri~tfq 573 (698)
T KOG2314|consen 531 -------DTASPEH-FAATEVEWDPTGRYVVTSSSSW--RHKVDNGYRIFTFQ 573 (698)
T ss_pred -------hccCccc-cccccceECCCCCEEEEeeehh--hhccccceEEEEee
Confidence 0111223 2558899999999988665533 45668889999998
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.9e-10 Score=100.32 Aligned_cols=206 Identities=12% Similarity=0.126 Sum_probs=120.3
Q ss_pred CCCcEEEEEecCCCCcE---EEEecCCC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 30 HPGEVNRIRELPQNTKI---VATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~---l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
....+..=+|+| +++. +.+...+| .|.+.++.+++. +.+..+.+ ......|+|||+.|+.
T Consensus 183 ~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~----------~~lt~~~g----~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 183 EHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG----------KKILALQG----NQLMPTFSPRKKLLAF 247 (428)
T ss_pred CCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc----------eEeecCCC----CccceEECCCCCEEEE
Confidence 445566778999 6543 23444443 577778877621 22222222 2346899999998886
Q ss_pred ecC-CC----eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 105 GGK-DK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 105 ~~~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
.+. +| .+..|++..+. ..................+|+|
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~-------------------------------------~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGA-------------------------------------IGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred EECCCCCcceeEEEeecccCC-------------------------------------CCcceEeecCCCCCcCCeEECC
Confidence 542 23 33445554310 0011122222223345679999
Q ss_pred CCCeeEEEecCCCeEEEEEc--cCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCC
Q 016547 180 SSAQEFCSVGDDSCLILWDA--RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~ 254 (387)
||..++++...+|...+|.+ ..... ....+..+...+....|+| +++.|+..+.+ ..|.+||+.+ ++
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~------g~ 362 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT------GR 362 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC------CC
Confidence 99555555556776555544 32111 1233334445677899999 89988876553 3689999886 44
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKV 296 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~ 296 (387)
. ..+......+....|+|||+.|+.+... ...|.++|+...
T Consensus 363 ~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 363 D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred e-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3 3333233456789999999987655543 356888888764
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.39 E-value=2.5e-11 Score=92.14 Aligned_cols=212 Identities=17% Similarity=0.219 Sum_probs=130.6
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 113 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v 113 (387)
|+.+.+. ....|+++..++.+.....-...+...........+...+..|++ +-.+-+.+--++.++++..||.+.+
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-p~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-IDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-CCCcccccccCCceEecCCCceEEE
Confidence 5556554 345788888888777776655533332222223345555555544 2233344445778999999999999
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec----
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG---- 189 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---- 189 (387)
.+.+.-.......+ ..|.+ -.+.++...+ +++.++.
T Consensus 116 ~s~~~~~~~~~~i~--------------------------------------~~~~~-~as~~~~~~~-~~i~s~~~g~~ 155 (319)
T KOG4714|consen 116 FSTDKDLALMSRIP--------------------------------------SIHSG-SASRKICRHG-NSILSGGCGNW 155 (319)
T ss_pred EechHHHhhhhhcc--------------------------------------ccccc-ccccceeecc-cEEecCCcceE
Confidence 99875211110000 01111 1112222233 2233221
Q ss_pred -CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 190 -DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 190 -~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
.-+..+.|+++..+. ..........|++++-+|...+++++|+.||.+-+||.++. ..+...++.|+.+|+.
T Consensus 156 n~~d~~~a~~~~p~~t--~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKT--LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWE 228 (319)
T ss_pred eeccceeeeccccccc--ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhh
Confidence 223456666665441 11111223349999999977888999999999999999984 4566677899999999
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+-|+|..+.-|.++++||.+.-||-..
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 999997544455999999999999874
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5.1e-12 Score=106.01 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=133.7
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
+......||+..|+.++... +.+-+++++.|.+|++|.++..-.. .....+..+++.|+. +|..+.|..+.++
T Consensus 726 irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk-~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKK-PIHDIGFLADLRS 798 (1034)
T ss_pred eeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccC-cccceeeeeccce
Confidence 44556678999999998777 7788999999999999998764211 112257778899998 7999999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
++++ ||-|.+||.--+........ ..-.+..+.|.|+.-- +.
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~d-----------------------------------apk~~a~~~ikcl~nv-~~ 840 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMED-----------------------------------APKEGAGGNIKCLENV-DR 840 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhc-----------------------------------CcccCCCceeEecccC-cc
Confidence 9876 78999999753322111100 0001112233333221 22
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
.-+++.++...+|+++|.+..++.+.... .+....+++++..+ .|++++++-..|.|.+.|.++ ++.+.+
T Consensus 841 ~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vINs 913 (1034)
T KOG4190|consen 841 HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVINS 913 (1034)
T ss_pred hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------Cceecc
Confidence 12344447889999999999885443332 33446688999999 999999999999999999999 776666
Q ss_pred eccccceE
Q 016547 259 FEGHSAAV 266 (387)
Q Consensus 259 ~~~~~~~i 266 (387)
++..+...
T Consensus 914 wrpmecdl 921 (1034)
T KOG4190|consen 914 WRPMECDL 921 (1034)
T ss_pred CCcccchh
Confidence 65444333
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.37 E-value=1.9e-09 Score=103.62 Aligned_cols=284 Identities=12% Similarity=0.142 Sum_probs=153.4
Q ss_pred EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCC-CCeEEE-eccCCCceEEEEECCCCCEEEEec-CCCeEE
Q 016547 36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS-RPDLIL-TGHQDNAEFALAMCPTEPYVLSGG-KDKSVV 112 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~-~~h~~~~v~~~~~~~~~~~l~s~~-~d~~i~ 112 (387)
.+++.+.+++++++-+.++.|++||...... ......... ...-.+ ...-. .-..+++.++++.|+.+. ..+.|+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~-~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFN-RPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccC-CCcEEEEeCCCCEEEEEeCCCceEE
Confidence 5677765677888888889999999865411 110000000 000000 00111 125889999888766554 457899
Q ss_pred EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547 113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 192 (387)
Q Consensus 113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 192 (387)
++|+.++.......... .+ .... .... .... .-..-..++++|+++.++++.+.++
T Consensus 650 ~id~~~~~V~tlag~G~------~g--------------~~~~--gg~~-~~~~-~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGT------KG--------------SDYQ--GGKK-GTSQ-VLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred EEecCCCEEEEEeccCc------cc--------------CCCC--CChh-hhHh-hcCCCeEEEEecCCCeEEEEECCCC
Confidence 99986543211000000 00 0000 0000 0000 0122357899996557888888899
Q ss_pred eEEEEEccCCCCceeEEeec---------------cCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCC--CC-
Q 016547 193 CLILWDARVGTSPVIKVEKA---------------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNG--VG- 253 (387)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~--~~- 253 (387)
.|++||...+. ...+.+ .-.....|+++| +++ ++++-+.++.|++||+.+..... .+
T Consensus 706 ~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 706 QIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred eEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 99999987764 111111 112456799999 776 55566667999999987621000 00
Q ss_pred ----CceEEeccc--------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547 254 ----SPINKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 321 (387)
Q Consensus 254 ----~~~~~~~~~--------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
.....+... -.....++++++|. ++++-..+++|++||.................... ....+.-
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG--~~~~a~l 858 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG--KALKAQL 858 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC--ccccccc
Confidence 000001000 11245889999998 67788889999999987642211100000000000 0012223
Q ss_pred CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.....++++++|+. ++ +-+.++.|++||+..
T Consensus 859 ~~P~GIavd~dG~l-yV-------aDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 859 SEPAGLALGENGRL-FV-------ADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCceEEEEeCCCCE-EE-------EECCCCEEEEEECCC
Confidence 46789999999974 44 334458999999984
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=5.7e-12 Score=118.92 Aligned_cols=187 Identities=20% Similarity=0.347 Sum_probs=141.2
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.|.++.=+|...+-+||+.||.|++|....++.+..++. .+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--------------------------------------~g- 2250 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--------------------------------------AG- 2250 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec--------------------------------------cC-
Confidence 477888888889999999999999999876554433222 12
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEEec
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR 245 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~ 245 (387)
...|+.+.|+.+| +.+..+..||.+.+|.+... .....+.|........|-. ..+++++ .++.+.+||..
T Consensus 2251 ~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk---~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2251 NSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK---PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred cchhhhhhhcccC-CceeeeccCCceeecccCCc---ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcc
Confidence 3778999999999 77888999999999998722 3556678888888888853 5566654 46899999987
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
.+.. ...+. ..|.+.++++++.|..+ +|.+|+.+|.|++||++... +...+..
T Consensus 2324 ~~~~---~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrq---------------l~h~~~~------ 2376 (2439)
T KOG1064|consen 2324 LPPM---NSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQ---------------LRHTFQA------ 2376 (2439)
T ss_pred cCcc---cceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHHH---------------HHHHhhh------
Confidence 5432 23344 77999999999999988 56799999999999998742 1211211
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+. ...+++ +|+..|.++||+++.
T Consensus 2377 ---~~-~~~~f~--------~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2377 ---LD-TREYFV--------TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ---hh-hhheee--------ccCcccceEEEEccc
Confidence 34 455666 888889999999993
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=1.8e-09 Score=89.89 Aligned_cols=275 Identities=12% Similarity=0.151 Sum_probs=163.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-.-++..++|+| .|.+|++....| |.+|.-... ..+. ..-|.+ |.-+.|+|.++||.+=+...
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~------------~~l~-~~~~~~--V~~~~fSP~~kYL~tw~~~p 93 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSK------------AKLV-RFRHPD--VKYLDFSPNEKYLVTWSREP 93 (561)
T ss_pred cCcchhheeecC-cchheehhhccc-eEEccccch------------hhee-eeecCC--ceecccCcccceeeeeccCC
Confidence 566889999999 999999887765 999998777 3222 233543 88999999999999865433
Q ss_pred ---------------eEEEEEcCCCcCccccCCCcccC-------CCCCCceeccCCCCCCCCCCCCC---CCCCCCcee
Q 016547 110 ---------------SVVLWSIQDHITSSATDPATAKS-------AGSSGSIIKQSPKPGDGNDKAAD---GPSVGPRGI 164 (387)
Q Consensus 110 ---------------~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 164 (387)
.+.+||+.++.....+....... ........+...+ ..+.+.+ .....+...
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---~sl~i~e~t~n~~~~p~~~ 170 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---SSLYIHEITDNIEEHPFKN 170 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc---CeEEEEecCCccccCchhh
Confidence 48999999886655444322220 0001111110000 1111111 111111222
Q ss_pred ecCCCCCeEEEEEccCCC-eeEEE-----ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee----
Q 016547 165 YNGHEDTVEDVTFCPSSA-QEFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---- 234 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~-~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---- 234 (387)
++ ...|....|+|.++ ..|+. .+..+.+++|.+.... .+.........-..+.|.+ .+.+|++--
T Consensus 171 lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ 245 (561)
T COG5354 171 LR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHT 245 (561)
T ss_pred cc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecccEEEEec-CCceEEEEEEEee
Confidence 22 35688889998742 22333 4567889999887555 2222222223334678888 676665421
Q ss_pred -------CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCee-EEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547 235 -------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV-FGSSAEDGLLNIWDYEKVGKKVEQGPRT 306 (387)
Q Consensus 235 -------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 306 (387)
....++|++++. .-+.......++|...+|.|.++.+ +++|-.+..+.++|++..
T Consensus 246 ksnKsyfgesnLyl~~~~e-------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------- 308 (561)
T COG5354 246 KSNKSYFGESNLYLLRITE-------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------- 308 (561)
T ss_pred ecccceeccceEEEEeecc-------cccceeccccccceeeeecccCCceeEEecccccceeecccccc----------
Confidence 235678888874 2223322457899999999987653 334567889999999873
Q ss_pred CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+. +...++.=+.+.|+|.++++++++-+ -.-|.+-+||..
T Consensus 309 ------l~--~~~Pe~~rNT~~fsp~~r~il~agF~-----nl~gni~i~~~~ 348 (561)
T COG5354 309 ------LR--FYFPEQKRNTIFFSPHERYILFAGFD-----NLQGNIEIFDPA 348 (561)
T ss_pred ------eE--EecCCcccccccccCcccEEEEecCC-----ccccceEEeccC
Confidence 11 22334445667777777777755422 234667777766
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=6.6e-11 Score=92.29 Aligned_cols=234 Identities=15% Similarity=0.250 Sum_probs=147.4
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.|+++.|...|.||++|...|.|.++.-+..... ..+....+++|
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c-----------------------------------eykf~teFQsh 72 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGC-----------------------------------EYKFFTEFQSH 72 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeeccccccc-----------------------------------chhhhhhhccc
Confidence 6899999999999999999999999976543200 00111112222
Q ss_pred ------------CCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCC-------------------------------
Q 016547 169 ------------EDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS------------------------------- 204 (387)
Q Consensus 169 ------------~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~------------------------------- 204 (387)
...|..+.|..+ +...++..+.|.+|++|.+.....
T Consensus 73 e~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl 152 (460)
T COG5170 73 ELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL 152 (460)
T ss_pred ccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc
Confidence 245788888765 345677888999999998865410
Q ss_pred ----------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-----ceEEEE
Q 016547 205 ----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCV 269 (387)
Q Consensus 205 ----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~i~~~ 269 (387)
++......|.-.|+++.++. +...+++ +.|=.|.+|++..... .-.+.-++.|. ..|++.
T Consensus 153 s~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lS-aDdLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSa 227 (460)
T COG5170 153 SEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLS-ADDLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSA 227 (460)
T ss_pred cccceEEEeccceeccccceeEeeeeeecC-chheeee-ccceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhc
Confidence 00001135666788899987 6666665 4677899999886431 22334445453 458999
Q ss_pred EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547 270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG 348 (387)
Q Consensus 270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~ 348 (387)
.|+|..-.+|.-.+..|.|++-|++...........- ....+--..-+.+-...|..+.|+++|++++. .|+
T Consensus 228 eFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls---Rdy---- 300 (460)
T COG5170 228 EFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS---RDY---- 300 (460)
T ss_pred ccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE---ecc----
Confidence 9999877677777789999999999532211100000 00000001112233457899999999998772 111
Q ss_pred CCceEEEEecCCCcccccchhhhhhhcc
Q 016547 349 GGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
.+|+|||++. ...++.++.-|
T Consensus 301 --ltvkiwDvnm-----~k~pikTi~~h 321 (460)
T COG5170 301 --LTVKIWDVNM-----AKNPIKTIPMH 321 (460)
T ss_pred --ceEEEEeccc-----ccCCceeechH
Confidence 6999999984 34455555433
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=3.1e-08 Score=82.48 Aligned_cols=246 Identities=10% Similarity=0.063 Sum_probs=138.2
Q ss_pred ecCCCCcEEE-Eec---------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC------CceEEEEECCCCCEE
Q 016547 39 ELPQNTKIVA-THT---------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD------NAEFALAMCPTEPYV 102 (387)
Q Consensus 39 ~~~~~~~~l~-t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~------~~v~~~~~~~~~~~l 102 (387)
++| +++.|. +.+ .+..|.+||..+.+ .+..+..... ..-..++++|||++|
T Consensus 53 ~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 53 VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------------PIADIELPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCc------------EEeEEccCCCchhhccCccceEEECCCCCEE
Confidence 688 555554 445 57899999999994 4433332111 112378999999999
Q ss_pred EEec-C-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 103 LSGG-K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 103 ~s~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
+... . +..|.+.|+.+++....... ..+...+. ..+-..+..+.|
T Consensus 120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~~vy~--t~e~~~~~~~~D 166 (352)
T TIGR02658 120 LFYQFSPSPAVGVVDLEGKAFVRMMDV-------------------------------PDCYHIFP--TANDTFFMHCRD 166 (352)
T ss_pred EEecCCCCCEEEEEECCCCcEEEEEeC-------------------------------CCCcEEEE--ecCCccEEEeec
Confidence 8765 3 78999999987654332221 00001111 011111223344
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeec-----cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+....++-..+|....=. ...+.. ...+ .+.+.++.++.+... |.|.+.|+....... ...
T Consensus 167 g~~~~v~~d~~g~~~~~~--------~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~ 232 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKP--------TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPA 232 (352)
T ss_pred CceEEEEecCCCceEEee--------eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee-cce
Confidence 422333333334322100 001100 0112 334436777766665 999999965421100 222
Q ss_pred eEEec-------cccceEEEEEEcCCCCeeEEEec---------CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 256 INKFE-------GHSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 256 ~~~~~-------~~~~~i~~~~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
...+. ...+.+.-++++++++++++... ..+.|.++|..+.. .+..+.
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------------vi~~i~- 296 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------------RLRKIE- 296 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---------------EEEEEe-
Confidence 22221 12334455999999998886431 22579999998752 233332
Q ss_pred CCCCeeEEEEccCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547 320 HRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 373 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~ 373 (387)
-...+..++++||++ .|+++ ...++.|.+.|.. +++.++++
T Consensus 297 vG~~~~~iavS~Dgkp~lyvt-------n~~s~~VsViD~~------t~k~i~~i 338 (352)
T TIGR02658 297 LGHEIDSINVSQDAKPLLYAL-------STGDKTLYIFDAE------TGKELSSV 338 (352)
T ss_pred CCCceeeEEECCCCCeEEEEe-------CCCCCcEEEEECc------CCeEEeee
Confidence 234789999999999 66653 3345899999999 67777776
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=1.9e-08 Score=83.34 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=113.9
Q ss_pred ecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC-eEEEEEcC
Q 016547 39 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-SVVLWSIQ 117 (387)
Q Consensus 39 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~ 117 (387)
|++.+|++++..+. |+..|.+...+. . .--+|.+ .|.-..+..+++-++.|..|| .+-++|.+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-------------~-iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGY-------------S-IQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCe-------------e-EEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecC
Confidence 55668899998875 678887766651 1 1224444 477778888888899999999 89999998
Q ss_pred CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEE
Q 016547 118 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197 (387)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 197 (387)
++.. ..+...-+.|.++..+++| +.++.+.....+.+.
T Consensus 391 ~~e~-----------------------------------------kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vi 428 (668)
T COG4946 391 GGEV-----------------------------------------KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVI 428 (668)
T ss_pred CceE-----------------------------------------EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEE
Confidence 6532 3445556789999999999 778888888999999
Q ss_pred EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC----eEEEEEecc
Q 016547 198 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRN 246 (387)
Q Consensus 198 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~~~d~~~ 246 (387)
|+.+++ ....-....+-|+.+.|+| +++++|-+--+| .|+++|+..
T Consensus 429 didngn--v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 429 DIDNGN--VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EecCCC--eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 999998 3334445678899999999 999999887776 588999876
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=2.6e-11 Score=105.14 Aligned_cols=219 Identities=19% Similarity=0.323 Sum_probs=154.4
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+-+|...|+.+.|+|+...++|+++.|-.|..||+.... .+...+..-.. .-..++|+-....+++
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-----------~p~ys~~~w~s-~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-----------RPFYSTSSWRS-AASQVKWNYKDPNVLA 175 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-----------cceeeeecccc-cCceeeecccCcchhh
Confidence 45668999999999999999999999999999999998873 55666555444 3468999876556666
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
.+..+.|++||.+.+ ..++..+++|...|+.++|...-...
T Consensus 176 sshg~~i~vwd~r~g---------------------------------------s~pl~s~K~~vs~vn~~~fnr~~~s~ 216 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKG---------------------------------------STPLCSLKGHVSSVNSIDFNRFKYSE 216 (1081)
T ss_pred hccCCceEEEeccCC---------------------------------------CcceEEecccceeeehHHHhhhhhhh
Confidence 667789999999854 23456778899999999997665457
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCC----CCCCceEEe
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSN----GVGSPINKF 259 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~----~~~~~~~~~ 259 (387)
+.+++.|++|++||......... .......+|..-.+-|....+.+. --.+..+.+++.++.... ...++++.|
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~-~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESK-RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hcccCCCCceeeecccccccccc-eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 89999999999999876542212 222334556655666632222222 112234445544432211 126789999
Q ss_pred ccccceEEEEEEcCCC---------CeeEEEecCCCeEEEEeCCC
Q 016547 260 EGHSAAVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~---------~~ll~s~~~d~~i~vwd~~~ 295 (387)
.+|...|....|-..+ .+-|++-+.|..+++|-+..
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 9999998877775432 24578999999999998865
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=2.9e-09 Score=81.53 Aligned_cols=235 Identities=11% Similarity=0.056 Sum_probs=150.1
Q ss_pred EEEEecC----CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCCC
Q 016547 35 NRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDK 109 (387)
Q Consensus 35 ~~i~~~~----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~ 109 (387)
..+.|.| ..-.+||.|+..|...+|...+.+ ........|.. .|+-+.=..+ .-.+..++.|.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-----------~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndh 138 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-----------GHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDH 138 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc-----------cceeeeccccc-chhhhhhhcccccceeeccCCc
Confidence 3456666 244689999999999999998763 22222333322 1111111111 22466677888
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC--CeEEEEEccCCCeeEEE
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~ 187 (387)
++++.+++..... ...|.. .+..+++++++ .++++
T Consensus 139 t~k~~~~~~~s~~------------------------------------------~~~h~~~~~~ns~~~snd~-~~~~~ 175 (344)
T KOG4532|consen 139 TGKTMVVSGDSNK------------------------------------------FAVHNQNLTQNSLHYSNDP-SWGSS 175 (344)
T ss_pred ceeEEEEecCccc------------------------------------------ceeeccccceeeeEEcCCC-ceEEE
Confidence 8888888643211 112222 37889999998 88999
Q ss_pred ecCCCeEEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE----eccc
Q 016547 188 VGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGH 262 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~ 262 (387)
.+....|..|.+......... ........-.+..|+. ....+|+++.||++.|||+|.+ +.+..+ ...|
T Consensus 176 Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~-----~tpm~~~sstrp~h 249 (344)
T KOG4532|consen 176 VGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNM-----ATPMAEISSTRPHH 249 (344)
T ss_pred ecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEeccc-----ccchhhhcccCCCC
Confidence 999999999998775533333 2333445556888998 8899999999999999999985 333332 2458
Q ss_pred cceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC-CeeEEEEccCCCeEEE
Q 016547 263 SAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNASDPWTVV 338 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~ 338 (387)
.+.+..+.|++.|.. ||.-.-.-+.+.+-|+++....+...... .....|.. .|..-.|+.++....+
T Consensus 250 nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--------d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 250 NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--------DVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred CCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--------cccccccccccccccccCCCccccc
Confidence 899999999986642 33333346789999999875443211110 01122333 4777788877776654
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=7.6e-09 Score=97.77 Aligned_cols=236 Identities=15% Similarity=0.258 Sum_probs=137.2
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEE----eccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIW----DVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
..+.|.++.|.+ +...++.+..+|.|.+. +.... ....-|.-+..|.+++||||+..|+..
T Consensus 74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~--------------~~E~VG~vd~GI~a~~WSPD~Ella~v 138 (928)
T PF04762_consen 74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDED--------------EIEIVGSVDSGILAASWSPDEELLALV 138 (928)
T ss_pred CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCc--------------eeEEEEEEcCcEEEEEECCCcCEEEEE
Confidence 347899999999 77778888899999999 43333 223333333469999999999999988
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCC--------CCCCCCCCCC-CCCceeecCCCCCeEEEE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGD--------GNDKAADGPS-VGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~v~~~~ 176 (387)
..++++.+-+-. .....................+.+...... ..-...+... ......+. +.+.-..++
T Consensus 139 T~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 139 TGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred eCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 888888876432 110000000000000000000000000000 0000000000 00112223 455667899
Q ss_pred EccCCCeeEEEecC---C---CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---CCeEEEEEeccC
Q 016547 177 FCPSSAQEFCSVGD---D---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNL 247 (387)
Q Consensus 177 ~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~ 247 (387)
|-.|| .+|++.+- . ..+++|+-+ +. .......-.+--.+++|.| .|+++|+.-. ...|.+|.-+
T Consensus 217 WRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErN-- 289 (928)
T PF04762_consen 217 WRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERN-- 289 (928)
T ss_pred ECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecC--
Confidence 99999 77777653 3 479999865 44 2333333334446889999 9999998875 3456666544
Q ss_pred CCCCCCCceEEec----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 248 TSNGVGSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 248 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
|-.-.+|. .....|..+.|++++. +||..-.|. |.+|-..+.
T Consensus 290 -----GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 290 -----GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred -----CcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCC
Confidence 33333332 3456899999999999 566665454 999998874
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=3.1e-08 Score=79.46 Aligned_cols=243 Identities=9% Similarity=0.149 Sum_probs=150.8
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC---CCeEEEEEcCCC--cCccccCC
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDH--ITSSATDP 127 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~--~~~~~~~~ 127 (387)
+.-|++|++++..... ... .+-.+.+ ..+-|+|+|++++|.++.. +|.|..|.++.. .......
T Consensus 15 s~gI~v~~ld~~~g~l--------~~~-~~v~~~~-nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGEL--------SLL-QLVAELG-NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR- 83 (346)
T ss_pred CCceEEEEEeCccccc--------chh-hhccccC-CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-
Confidence 4569999998653211 111 1222333 3578999999999988765 477888887642 1110000
Q ss_pred CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-CCCeEEEEEccC-CCCc
Q 016547 128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARV-GTSP 205 (387)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~ 205 (387)
....+ .+-.-+++++++ ++++++. ..|.|.++-++. +...
T Consensus 84 -----------------------------------~~~~g--~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~ 125 (346)
T COG2706 84 -----------------------------------QTLPG--SPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQ 125 (346)
T ss_pred -----------------------------------cccCC--CCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccc
Confidence 11111 223778999999 5555554 678999999866 3322
Q ss_pred eeEEeeccCCC----------eeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547 206 VIKVEKAHDAD----------LHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 274 (387)
Q Consensus 206 ~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (387)
.......|.+. +....+.| ++++|++.+. .-.|.+|++....-. ......+ ........|.|+|+
T Consensus 126 ~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~--~~~~~~v-~~G~GPRHi~FHpn 201 (346)
T COG2706 126 PVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLT--PADPAEV-KPGAGPRHIVFHPN 201 (346)
T ss_pred cceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccc--ccccccc-CCCCCcceEEEcCC
Confidence 22233344444 78899999 9999988765 356999999852210 0111122 24566789999999
Q ss_pred CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547 275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ 354 (387)
Q Consensus 275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~ 354 (387)
+++..+..--+++|.+|............+... .+-..+. -..+..++..+|+|++|.++--. ...|-
T Consensus 202 ~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----tlP~dF~-g~~~~aaIhis~dGrFLYasNRg-------~dsI~ 269 (346)
T COG2706 202 GKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----TLPEDFT-GTNWAAAIHISPDGRFLYASNRG-------HDSIA 269 (346)
T ss_pred CcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----cCccccC-CCCceeEEEECCCCCEEEEecCC-------CCeEE
Confidence 998877888899999999988533322111110 0011111 23467889999999999875432 25888
Q ss_pred EEecCC
Q 016547 355 IWRMSD 360 (387)
Q Consensus 355 iw~~~~ 360 (387)
+|.++.
T Consensus 270 ~f~V~~ 275 (346)
T COG2706 270 VFSVDP 275 (346)
T ss_pred EEEEcC
Confidence 888874
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.5e-09 Score=88.09 Aligned_cols=277 Identities=12% Similarity=0.210 Sum_probs=165.2
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-------
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK------- 107 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~------- 107 (387)
+-+.|+| .|.||+|-..-| |.+|--++. ..++.+ .|++ |.-+.|||+.+||+|=+.
T Consensus 214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f------------~r~~RF-~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQG-IALWGGESF------------DRIQRF-YHPG--VQFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeEEecC-CceEEEEEeccc-eeeecCccH------------HHHHhc-cCCC--ceeeecCCccceEEEecCCccccCc
Confidence 5688999 999999988876 899976655 223333 3664 789999999999998553
Q ss_pred ----CCeEEEEEcCCCcCccccCCCccc-------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 108 ----DKSVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 108 ----d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
...++|||+.++.....+...... .-+.+....+.. ....+.+++.+...++..-.-.-..|....
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm---~~~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM---TGNSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe---ccceEEEEecCceeeecccccCCccccCcc
Confidence 257999999998766555442000 011111111111 123444555555443333333446788899
Q ss_pred EccCCCeeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe----------eCCCeEEE
Q 016547 177 FCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG----------SADNSVRM 241 (387)
Q Consensus 177 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~i~~ 241 (387)
|+|.+ ++||--... ..+.+-.+-+++ .++....+.-.=..+-|-. +|.+|+.- +.-..+.|
T Consensus 354 wsP~~-~llAYwtpe~~~~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 354 WSPTS-NLLAYWTPETNNIPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred cCCCc-ceEEEEcccccCCcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEE
Confidence 99997 666653321 234444444433 2332222222222345555 66666542 22234666
Q ss_pred EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
+.++.. .-++.... ....|...+|-|.|....+..+. ..++.+|.+.... ..+.++..+..
T Consensus 430 frireK-----dIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~~dk 492 (698)
T KOG2314|consen 430 FRIREK-----DIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------KKPSLVKELDK 492 (698)
T ss_pred EEeecc-----CCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------Cchhhhhhhcc
Confidence 766652 23333333 45788999999999864333332 3568888887421 11234444443
Q ss_pred CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...+.+-|+|.|+++++++ -+|..|.+..+|++
T Consensus 493 --~~~N~vfwsPkG~fvvva~-----l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 493 --KFANTVFWSPKGRFVVVAA-----LVSRRGDLEFYDTD 525 (698)
T ss_pred --cccceEEEcCCCcEEEEEE-----ecccccceEEEecc
Confidence 4678899999999988776 45577999999998
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.5e-08 Score=87.91 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=117.1
Q ss_pred ceEEEEECCCCCE-EEEecC---CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 89 AEFALAMCPTEPY-VLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 89 ~v~~~~~~~~~~~-l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
.+..-.|+|||+. ++..+. +..|.++|+.++.. ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------------------------------------~~ 227 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------------------------------------EK 227 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------------------------------------EE
Confidence 4668999999985 554333 34678888765422 22
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCC--CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC--eE
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SV 239 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i 239 (387)
+....+......|+|||..++++.+.+ ..|.++|+..++ ...+..+........|+| +++.|+..+. .| .|
T Consensus 228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNI 303 (419)
T ss_pred EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceE
Confidence 222344556678999996666666544 457777887766 233333333344568999 8887776664 34 46
Q ss_pred EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC--------CeEEEEeCCCCCceeccCCCCCCCCc
Q 016547 240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPA 311 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~ 311 (387)
.+.|+.. ++..+... .... ...|+|+|++++.+.... ..|.+.|+......
T Consensus 304 y~~dl~~------g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~------------ 362 (419)
T PRK04043 304 FMKKLNS------GSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR------------ 362 (419)
T ss_pred EEEECCC------CCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE------------
Confidence 6666665 33322211 1111 248999999877666543 36777787664221
Q ss_pred eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+... .......|+|||+.++.+.. . +....+.+.+++
T Consensus 363 ----~LT~~-~~~~~p~~SPDG~~I~f~~~----~-~~~~~L~~~~l~ 400 (419)
T PRK04043 363 ----RLTAN-GVNQFPRFSSDGGSIMFIKY----L-GNQSALGIIRLN 400 (419)
T ss_pred ----ECCCC-CCcCCeEECCCCCEEEEEEc----c-CCcEEEEEEecC
Confidence 11111 12235789999998887643 1 233457777777
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.24 E-value=6.1e-09 Score=79.82 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=143.9
Q ss_pred cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CCCEEEEecCCCeEEEEEcCCCcCcccc
Q 016547 51 TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVVLWSIQDHITSSAT 125 (387)
Q Consensus 51 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 125 (387)
+....|.+|+..+... ..+... ..+.|.| ...+|+.|+..|...+|...+.....
T Consensus 49 ~~t~sv~i~~~y~N~~----------~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~-- 108 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPK----------GIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL-- 108 (344)
T ss_pred cceeeeEeccccCCch----------hhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcccce--
Confidence 3445688888877621 122222 2344444 34589999999999999987542211
Q ss_pred CCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc
Q 016547 126 DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 205 (387)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 205 (387)
.....|...|+-+.=.-+...-+..++.|.++++.++..+...
T Consensus 109 -------------------------------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 109 -------------------------------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred -------------------------------------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 1112222222222111122234667788888888888765522
Q ss_pred eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEEEEcCCCCeeEEEecC
Q 016547 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAE 284 (387)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ll~s~~~ 284 (387)
...... .-.+.++++++ +++++++.++...|-+|.+.... ...+. .....+..-.+..|+.... .||++..
T Consensus 152 ~~~h~~--~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Q 223 (344)
T KOG4532|consen 152 FAVHNQ--NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQ 223 (344)
T ss_pred ceeecc--ccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc----ceeeeeEecccCCCceeeeeccCcc-eEEEEec
Confidence 221111 12378999999 99999999999999999988632 12222 1222334446788888777 5899999
Q ss_pred CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 285 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 285 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
||.+.|||++..+.+.... -.+...|.+.+..+.|++.|..=++-.+.. =+.+.+-|+++.
T Consensus 224 dg~~~I~DVR~~~tpm~~~----------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh------fs~~hv~D~R~~ 284 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEI----------SSTRPHHNGAFRVCRFSLYGLLDLLFISEH------FSRVHVVDTRNY 284 (344)
T ss_pred CCcEEEEEecccccchhhh----------cccCCCCCCceEEEEecCCCcceEEEEecC------cceEEEEEcccC
Confidence 9999999999876654321 222356899999999998775433333322 278899998854
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.22 E-value=4.6e-08 Score=76.16 Aligned_cols=180 Identities=12% Similarity=0.186 Sum_probs=110.3
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-------cCCCeeEEEecCCC-----CCeEEEeeCCC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------HDADLHCVDWNPLD-----DNLILTGSADN 237 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-----~~~l~~~~~dg 237 (387)
-.-..++|+||+ .+||.+...|+|+++|+...+ +..+.. -...|..|.|.+.. ...|++-..+|
T Consensus 44 PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 44 PQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred chheEEEECCCC-cEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence 345789999999 899999999999999997644 222211 12456666665422 33666677888
Q ss_pred eEEEEEeccCCCCCCCCceEEec--c-ccceEEEEEEcCCCCeeEEEecCCC----------eEEEEeCCCCCceeccCC
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFE--G-HSAAVLCVQWSPDKSSVFGSSAEDG----------LLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~ll~s~~~d~----------~i~vwd~~~~~~~~~~~~ 304 (387)
.++=|-+...++.+ .+...++. . +...|.++.++|..+.|++.|.... -+..|.+-+...-.....
T Consensus 120 ~L~Sy~vs~gt~q~-y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 120 QLRSYLVSVGTNQG-YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred eeeeEEEEcccCCc-ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 88877764311100 33333332 2 3668999999999886665555332 366777655332222111
Q ss_pred CCCC----C--Ccee-------eee-eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547 305 RTTN----Y--PAGL-------FFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 305 ~~~~----~--~~~~-------~~~-~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
.... . ...+ ++. .......|..|..||||..|+ +...+|.|.+|++..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La--------~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA--------CIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE--------EEEcCCeEEEEecCcch
Confidence 1100 0 0000 111 122456899999999999777 55566999999999653
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.20 E-value=1.8e-10 Score=87.53 Aligned_cols=167 Identities=14% Similarity=0.242 Sum_probs=103.0
Q ss_pred eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-----CCC
Q 016547 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-----ADN 237 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~dg 237 (387)
..+..|+++-.+-..+-.+ +-++++..||.+.+.+.+.-. ............--+.++.. .++.+.++. .-+
T Consensus 83 ~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHH-hhhhhcccccccccccceee-cccEEecCCcceEeecc
Confidence 3344444433333333333 569999999999999987622 11122211111112223333 344444432 123
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
..+.|+++.. ...+...+. ...|.+++-+|..++++++|++||.+.+||+++..- ....+
T Consensus 160 ~~~a~~~~p~-----~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------p~S~l 219 (319)
T KOG4714|consen 160 NFYANTLDPI-----KTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------PVSLL 219 (319)
T ss_pred ceeeeccccc-----ccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------hHHHH
Confidence 4555665542 122222222 234999999999888999999999999999998522 24456
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..|+.+++.+.|+|..+--+. +++.||.+-.||.+
T Consensus 220 ~ahk~~i~eV~FHpk~p~~Lf-------t~sedGslw~wdas 254 (319)
T KOG4714|consen 220 KAHKAEIWEVHFHPKNPEHLF-------TCSEDGSLWHWDAS 254 (319)
T ss_pred HHhhhhhhheeccCCCchhee-------EecCCCcEEEEcCC
Confidence 789999999999998765555 55566999999988
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=1.1e-08 Score=96.69 Aligned_cols=271 Identities=14% Similarity=0.186 Sum_probs=156.0
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCC-----------------------CcccccCCCCC-------CC-
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP-----------------------NRHAVLGATNS-------RP- 78 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------------------~~~~~~~~~~~-------~~- 78 (387)
-.+.|.|++|+| |+.+||..+.+|++.+-.-+-.. ....+.+.... .+
T Consensus 119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 478999999999 88999999989988876522110 00001010000 00
Q ss_pred -----eEEEeccCCCceEEEEECCCCCEEEEecC---C---CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCC
Q 016547 79 -----DLILTGHQDNAEFALAMCPTEPYVLSGGK---D---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 147 (387)
Q Consensus 79 -----~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (387)
...+. +.+.. ..|+|-.||.|+|+.+. . +.++||+-+. ...
T Consensus 198 ~~~~d~~~~s-~dd~~-~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~------------------------- 249 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGR-VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQ------------------------- 249 (928)
T ss_pred CCccccCccc-cCCCc-eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEE-------------------------
Confidence 01122 33333 48999999999998764 2 5789998652 110
Q ss_pred CCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC---CCeEEEEEccCCCCceeEEe--eccCCCeeEEEe
Q 016547 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVE--KAHDADLHCVDW 222 (387)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~ 222 (387)
..-..-.+--.+++|-|.| +++++... ...|.+|.-..-+ .-...+ ......|..++|
T Consensus 250 ---------------stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 250 ---------------STSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred ---------------eccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEE
Confidence 0001111223467999999 77777653 3456666533222 111122 234568999999
Q ss_pred cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547 223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 301 (387)
++ ++..||..-.|. |.+|-..+.. +-..+++... ...+..+.|+|....-|...+.+|.+..+++.-.-....
T Consensus 313 n~-ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 313 NS-DSEILAVWLEDR-VQLWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred CC-CCCEEEEEecCC-ceEEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 99 999999977666 9999988732 3333444322 233455999997766566666667776555432111000
Q ss_pred c--------------------CCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 302 Q--------------------GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 302 ~--------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
. .......|+......-.-...|.+++|++++..++ +-..||.|.+|....
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a--------vl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA--------VLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE--------EEECCCCEEEEEecC
Confidence 0 00111122222222223456899999999987755 333458999998653
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=1.5e-08 Score=84.55 Aligned_cols=289 Identities=17% Similarity=0.217 Sum_probs=169.8
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCC---------------cEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-c
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSP---------------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-A 89 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~ 89 (387)
..+.|. .|..+.|+| .+++|.|-+..+ .+.+||..++ ..+..+.+.... .
T Consensus 67 ~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg------------~iv~sf~~~~q~~~ 132 (561)
T COG5354 67 VRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG------------MIVFSFNGISQPYL 132 (561)
T ss_pred eeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCc------------eeEeeccccCCccc
Confidence 334444 488899999 899999986644 3899999998 555555555442 1
Q ss_pred eE-EEEECCCCCEEEEecCCCeEEEEEcCCCcCcccc---CCCc----ccCCCCCCc-eeccCCC--CCCCCCCCCCCCC
Q 016547 90 EF-ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT---DPAT----AKSAGSSGS-IIKQSPK--PGDGNDKAADGPS 158 (387)
Q Consensus 90 v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~----~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~ 158 (387)
.. -+.|+-+.+++|--. ...+.|+++........+ .+.. ...+.+... +...... .....+.++..+.
T Consensus 133 ~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 133 GWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred ccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 23 678888888877553 357899997322111110 0000 001111111 2222221 2233344444443
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEec----------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 228 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (387)
...+....-....=-.+.|.+.|..+++-.- ....+.+++++... +.....-.++|...+|.| .++
T Consensus 212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p-~S~ 287 (561)
T COG5354 212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEP-LSS 287 (561)
T ss_pred CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecc-cCC
Confidence 3333222222222245778888844333211 13567888887554 223335678999999999 776
Q ss_pred eEEEee--CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCC
Q 016547 229 LILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 229 ~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~ 304 (387)
.+++.+ .+-.+.++|++. .....+ .+..=+.+.|+|.++++|..|- .-|.|.+||....-
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~-------Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf------- 351 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRG-------NLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF------- 351 (561)
T ss_pred ceeEEecccccceeeccccc-------ceEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce-------
Confidence 666655 578899999994 433333 3455678899999999875443 34779999987631
Q ss_pred CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.++..+.+. ...-+.|+|+++++..+.-.. =--.|+.|+|||+..
T Consensus 352 -------~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~--k~~~Dn~i~l~~v~g 396 (561)
T COG5354 352 -------KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE--KLRVDNSIKLWDVYG 396 (561)
T ss_pred -------EEEEEeecC--CceEeeccCCceEEEecCCCc--ccccCcceEEEEecC
Confidence 122233332 334567999999888654211 113589999999984
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=1.1e-09 Score=88.57 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=108.9
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
...+..++.+ .+++.+..+....+++.+.... ...... .-....+++.+.. +......+..-|-++-+|+-...
T Consensus 65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~- 140 (390)
T KOG3914|consen 65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSAD- 140 (390)
T ss_pred ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeeccc-
Confidence 3445566666 7888888888877777765442 111111 2223344555555 55555555555555555554421
Q ss_pred CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee-eccCCCCeeEEE
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFH 328 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~ 328 (387)
..+...+-+|-+.++.++|+||++++ +++..|..|+|-.+.... .+.. ..||..-|..++
T Consensus 141 ---~~~~~~~lGhvSml~dVavS~D~~~I-itaDRDEkIRvs~ypa~f---------------~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 141 ---SGRCEPILGHVSMLLDVAVSPDDQFI-ITADRDEKIRVSRYPATF---------------VIESFCLGHKEFVSTIS 201 (390)
T ss_pred ---ccCcchhhhhhhhhheeeecCCCCEE-EEecCCceEEEEecCccc---------------chhhhccccHhheeeee
Confidence 12334455799999999999999975 599999999998776531 1222 357999999999
Q ss_pred EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547 329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 373 (387)
Q Consensus 329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~ 373 (387)
.-++.. |+ +||.|++|++||+. +++.+.++
T Consensus 202 l~~~~~-Ll--------S~sGD~tlr~Wd~~------sgk~L~t~ 231 (390)
T KOG3914|consen 202 LTDNYL-LL--------SGSGDKTLRLWDIT------SGKLLDTC 231 (390)
T ss_pred eccCce-ee--------ecCCCCcEEEEecc------cCCccccc
Confidence 988643 55 78888999999999 67766544
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.6e-10 Score=97.26 Aligned_cols=175 Identities=22% Similarity=0.306 Sum_probs=121.8
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
.+..+.||+. .|..++--.+.+-+++++.|++|++|.++..... ..
T Consensus 727 rL~nf~GH~~-~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~ 772 (1034)
T KOG4190|consen 727 RLCNFTGHQE-KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IG 772 (1034)
T ss_pred eeecccCcHH-HhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------cc
Confidence 3456788987 5778777777888999999999999999753211 11
Q ss_pred CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEE-EeeC
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLIL-TGSA 235 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~-~~~~ 235 (387)
+..+..++..|+.+|.++.|..+. +.+++ -||.|++||.--++...........+.+..+..-++ +..++. .++.
T Consensus 773 tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 773 TSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA 849 (1034)
T ss_pred cceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc
Confidence 223457788999999999999886 55655 478999999876652111111112223333333331 333444 4477
Q ss_pred CCeEEEEEeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
..+|+++|.+. ..-..+++ +.+..+.+++..+.|.+ +|.+-.+|+|.+.|.+++
T Consensus 850 eSTVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 850 ESTVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARNG 908 (1034)
T ss_pred hhhheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCCC
Confidence 89999999998 65555554 33456889999999997 467777999999999985
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3.2e-10 Score=89.74 Aligned_cols=167 Identities=19% Similarity=0.278 Sum_probs=119.5
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++.+.+..+-+-|++++. ...+. ..+.|.++.|.. .++++..|...|.|..+|+|... .+.+.+...+. |.+.
T Consensus 228 fs~G~sqqv~L~nvetg~---~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn-qG~~~~a~rly-h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN-QGNGWCAQRLY-HDSS 300 (425)
T ss_pred ecccccceeEEEEeeccc---ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc-cCCCcceEEEE-cCcc
Confidence 556677889999999887 23343 667899999998 89999999999999999999741 12244555555 8999
Q ss_pred EEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE--EEEccCCCeEEEEecC
Q 016547 266 VLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD--FHWNASDPWTVVSVSD 342 (387)
Q Consensus 266 i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~s~s~ 342 (387)
|+++..-. ++++| ++.+.+|+|++||++..+.. .-+.+..||...-.- +...+....++
T Consensus 301 vtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~----- 362 (425)
T KOG2695|consen 301 VTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCK------------KSVMQYEGHVNLSAYLPAHVKEEEGSIF----- 362 (425)
T ss_pred hhhhhhhccccceE-eeccCcCceeEeeehhhhcc------------cceeeeecccccccccccccccccceEE-----
Confidence 99998776 66665 47778999999999975332 126667777653332 33455556565
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhhhhhcc----CceEEEeeec
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF----KAHVISCTSK 386 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~v~~~~f~ 386 (387)
++|.|...|||.+. .+.++.++.-- +..+.+++|.
T Consensus 363 ---s~GdDcytRiWsl~------~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 363 ---SVGDDCYTRIWSLD------SGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ---EccCeeEEEEEecc------cCceeeccCCCCccccccccceehh
Confidence 66667999999999 78888776532 2245566653
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=94.46 Aligned_cols=172 Identities=17% Similarity=0.232 Sum_probs=126.9
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
...|+.|+....|++.|+.||.+++..+.+......... +-.......-+.+.+|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------------------laa~snLsmNQtLeGH 70 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------------------LAAASNLSMNQTLEGH 70 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------------------cccccccchhhhhccC
Confidence 468999999999999999999999998876422111111 0011122333678999
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
...|.-+.|+.+. +.|.+...+|.|.+|-+-.+.+-....-....+.|.+++|+. +|..+.....||.|.+=.+.
T Consensus 71 ~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd--- 145 (1189)
T KOG2041|consen 71 NASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD--- 145 (1189)
T ss_pred cceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec---
Confidence 9999999999887 789999999999999998877432222334567889999999 99999999999999887666
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+..+..-.-.......+.|++|.+.+| .+-.+|.+.+||...
T Consensus 146 ----GNRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqg 187 (1189)
T KOG2041|consen 146 ----GNRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQG 187 (1189)
T ss_pred ----cceecchhcchheccceeecccHHHHH-hhhcCCcEEEecccc
Confidence 333332221223345789999998654 677789999999764
No 287
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.3e-07 Score=80.05 Aligned_cols=261 Identities=11% Similarity=0.080 Sum_probs=144.7
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCce------eccCCCCCCCCCCCCCCCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSI------IKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 158 (387)
.++..+++++|++++.+. +..++|++................ .+.+.... +..........+.+++..+
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 356889999999888876 668889888766322211111000 01110000 0000111122333444444
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEE-----
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILT----- 232 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~----- 232 (387)
......+......-++..|++|. .++.--..+.+++|++...+ ...-..|...|+.+.++|. ....+|+
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~---~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFK---TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred ceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCcc---ceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 32222222221222578888886 34444456789999987754 2222345667777777772 1223332
Q ss_pred eeCCCeEEEEEeccCCCC-------------------CC--------------------------------CCceEEecc
Q 016547 233 GSADNSVRMFDRRNLTSN-------------------GV--------------------------------GSPINKFEG 261 (387)
Q Consensus 233 ~~~dg~i~~~d~~~~~~~-------------------~~--------------------------------~~~~~~~~~ 261 (387)
.+.-+.++||........ .. ......+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 233345666654410000 00 11111111
Q ss_pred ccceEEEEEEcCCCCeeEE-EecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 262 HSAAVLCVQWSPDKSSVFG-SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
..++|.++.|+|+++.+.+ -|-.-.++.|||++-. .++.+ .+++-+++-|+|.|+++++++
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------------~v~df--~egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------------PVFDF--PEGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------------EeEeC--CCCCccceEECCCCCEEEEee
Confidence 3678999999999976433 3445678999999862 23333 356778999999999998877
Q ss_pred cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
-|-.-|.|-|||+. +.+++..+..-.. +-++|+|
T Consensus 331 -----FGNL~G~mEvwDv~------n~K~i~~~~a~~t--t~~eW~P 364 (566)
T KOG2315|consen 331 -----FGNLPGDMEVWDVP------NRKLIAKFKAANT--TVFEWSP 364 (566)
T ss_pred -----cCCCCCceEEEecc------chhhccccccCCc--eEEEEcC
Confidence 44567999999999 6777776654332 3344554
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=7.2e-08 Score=80.09 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=96.9
Q ss_pred cCCCCCeEEEEEccCCCeeEEEecCCC-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547 166 NGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 166 ~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~ 244 (387)
-+|...|.-..+..++ .-++.|..|| .+-++|.++++ ...+...-+.|.++..+| +|.+++++.....|-++|+
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDI 430 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEe
Confidence 3566778888887777 5788999999 89999999887 556666778999999999 9999999999999999999
Q ss_pred ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC----eEEEEeCCCC
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKV 296 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~----~i~vwd~~~~ 296 (387)
.+ +.....-+...+-|+.++|+|++++ +|-+--+| .|+++|+...
T Consensus 431 dn------gnv~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 431 DN------GNVRLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred cC------CCeeEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCC
Confidence 98 6555544556778999999999996 45554444 5999999874
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=3.5e-07 Score=74.22 Aligned_cols=226 Identities=10% Similarity=0.078 Sum_probs=138.9
Q ss_pred EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC-CCCCEEEEecCCCeEEEE
Q 016547 36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKSVVLW 114 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~-~~~~~l~s~~~d~~i~vw 114 (387)
+..|.+.++.++++--..+.|..|+..+.. . ..+.... ...+.+. +++. |+.+..+ .+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~------------~-~~~~~~~---~~G~~~~~~~g~-l~v~~~~-~~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE------------V-EVIDLPG---PNGMAFDRPDGR-LYVADSG-GIAVV 65 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE------------E-EEEESSS---EEEEEEECTTSE-EEEEETT-CEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe------------E-EEEecCC---CceEEEEccCCE-EEEEEcC-ceEEE
Confidence 567787688888888889999999998872 1 1122221 3577777 5654 4444444 44555
Q ss_pred EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cC-CCCCeEEEEEccCCCeeEEEecCC
Q 016547 115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NG-HEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
|..++.... +... .. .....+.+++.|+| ++.++....
T Consensus 66 d~~~g~~~~--------------------------------------~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~ 106 (246)
T PF08450_consen 66 DPDTGKVTV--------------------------------------LADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGG 106 (246)
T ss_dssp ETTTTEEEE--------------------------------------EEEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred ecCCCcEEE--------------------------------------EeeccCCCcccCCCceEEEcCCC-CEEEEecCC
Confidence 877642211 1111 11 34568899999999 666665433
Q ss_pred --------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE-EeeCCCeEEEEEeccCCCCC-CCCceEEecc
Q 016547 192 --------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNG-VGSPINKFEG 261 (387)
Q Consensus 192 --------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~ 261 (387)
|.|..++.. ++ .......-...+.|+|+| +++.|+ +-+..+.|..|++....... ..+.+..+..
T Consensus 107 ~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp BCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred CccccccccceEEECCC-Ce---EEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 557777766 33 222333345678999999 887665 56678889999997521100 0011222232
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE-ccCCCeEEEEe
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV 340 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~s~ 340 (387)
..+..-.+++..+|+ |+++....+.|.++|.+. +++....-....+++++| -++...|+++.
T Consensus 182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G----------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG----------------KLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS----------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc----------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 233578899999998 566666789999999873 223333333458899999 47778888764
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1.8e-07 Score=81.23 Aligned_cols=194 Identities=10% Similarity=0.057 Sum_probs=113.4
Q ss_pred CcEEEEEecCCCCc-EEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ec
Q 016547 32 GEVNRIRELPQNTK-IVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GG 106 (387)
Q Consensus 32 ~~v~~i~~~~~~~~-~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~ 106 (387)
+.+..-.|+| +++ .++..+. +..|.++|+.++ +..... ...+ ......|+|||+.|+. .+
T Consensus 188 ~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg------------~~~~lt-~~~g-~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 188 GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTG------------KKEKIA-SSQG-MLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCC------------cEEEEe-cCCC-cEEeeEECCCCCEEEEEEc
Confidence 4678899999 665 3554332 357889999877 222222 2333 3457789999987764 33
Q ss_pred CC--CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 107 KD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 107 ~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
.+ ..|.++|+.++.. ..+..+........|+|||..+
T Consensus 253 ~~g~~~Iy~~dl~~g~~-----------------------------------------~~LT~~~~~d~~p~~SPDG~~I 291 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTL-----------------------------------------TQITNYPGIDVNGNFVEDDKRI 291 (419)
T ss_pred cCCCcEEEEEECCCCcE-----------------------------------------EEcccCCCccCccEECCCCCEE
Confidence 34 4566667654321 1122222222345799999666
Q ss_pred EEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---------CeEEEEEeccCCCCCCC
Q 016547 185 FCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 185 l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~ 253 (387)
+++....+ .|.+.|+..++. .+.. .... ....|+| +++.++..+.. ..|.+.|+.. +
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~--~rlt-~~g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~------g 359 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSV--EQVV-FHGK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNS------D 359 (419)
T ss_pred EEEECCCCCceEEEEECCCCCe--EeCc-cCCC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCC------C
Confidence 66665544 577778877662 1211 1111 1248999 88888777654 2677778765 3
Q ss_pred CceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCC
Q 016547 254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK 295 (387)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~ 295 (387)
. ...+... .......|+|||+.++.+....+. +.+.++..
T Consensus 360 ~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 360 Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3 3334322 223358899999987655544444 55555544
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=7.7e-08 Score=92.84 Aligned_cols=225 Identities=12% Similarity=0.168 Sum_probs=132.7
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec------c-CCCceEEEEECC-CCCEEEEe
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------H-QDNAEFALAMCP-TEPYVLSG 105 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~------h-~~~~v~~~~~~~-~~~~l~s~ 105 (387)
...+++.++++.+.++-...+.|+++|..++... .+.+.. .......+ . -..+ ..++++| ++..+++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G--~~g~~~~gg~~~~~~~ln~P-~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNG--TKGSDYQGGKKGTSQVLNSP-WDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccC--cccCCCCCChhhhHhhcCCC-eEEEEecCCCeEEEEE
Confidence 4778888733334444455678999998765211 110000 00000000 0 0112 4789999 55566777
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.++.|++||..++....... .+ ......... .....-.....|+++|++..++
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G---------~G------------~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LY 755 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSG---------DG------------YERNLNGSS-----GTSTSFAQPSGISLSPDLKELY 755 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEec---------CC------------ccccCCCCc-----cccccccCccEEEEeCCCCEEE
Confidence 778999999987653211000 00 000000000 0001123467899999985677
Q ss_pred EEecCCCeEEEEEccCCCCceeE-----------Eeec--------cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 186 CSVGDDSCLILWDARVGTSPVIK-----------VEKA--------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
++-+.++.|++||+.++...... .+.. .-.....+++++ +++++++-+.++.|++||..+
T Consensus 756 VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 756 IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCC
Confidence 78888899999999876521110 0000 012346889999 889888888999999999875
Q ss_pred CCCCCCCCceEEecc--------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 247 LTSNGVGSPINKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 247 ~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+... .+.+ .-.....++++++|+ ++++-+.++.|++||+.+..
T Consensus 835 ------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 ------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence 3222 2211 112467899999998 67788889999999998753
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=2.8e-09 Score=86.18 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=109.8
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
...+..++.++++|.+..+....++++...... .++...+. -.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------------------~kl~~~~~-v~ 107 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------------------AKLLDVSC-VP 107 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------------------ceeeeEee-cc
Confidence 445677888899998888888778877643210 01111111 11
Q ss_pred CCeEEEEEccCCCeeEEE---ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 170 DTVEDVTFCPSSAQEFCS---VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
..-+++.+..+. ..... .+....+.+|....+. .....+|-+.++.++++| ++++++++..|..|++-....
T Consensus 108 ~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~~---~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 108 KRPTAISFIRED-TSVLVADKAGDVYSFDILSADSGR---CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA 182 (390)
T ss_pred cCcceeeeeecc-ceEEEEeecCCceeeeeecccccC---cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCc
Confidence 222334444333 22333 3444555566555433 456678999999999999 999999999999999977665
Q ss_pred CCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547 247 LTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 301 (387)
...+..+ -+|..-|..++.-++.. |++++.|+++++||+.++....+
T Consensus 183 ------~f~IesfclGH~eFVS~isl~~~~~--LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 183 ------TFVIESFCLGHKEFVSTISLTDNYL--LLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ------ccchhhhccccHhheeeeeeccCce--eeecCCCCcEEEEecccCCcccc
Confidence 4444444 46999999999987754 56999999999999999776643
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=1.6e-09 Score=85.83 Aligned_cols=124 Identities=14% Similarity=0.235 Sum_probs=93.6
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
.++.|.++.|...+ ++++.|+.+|.|..+|++...+- -.....-|.+.|+++..-..++++|++.+.+|.|.+||+|
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 45678899998877 79999999999999999986310 1122235899999998876678999999999999999999
Q ss_pred cCCCCCCCCceEEeccccceEEE--EEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLC--VQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
..+. ++-+.++++|-..-.- +-..+.... ++++++|...+||.++.+
T Consensus 330 ~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg~-I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 330 ATKC---KKSVMQYEGHVNLSAYLPAHVKEEEGS-IFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhc---ccceeeeecccccccccccccccccce-EEEccCeeEEEEEecccC
Confidence 8322 2338888888543322 233455554 457999999999999985
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=3.3e-07 Score=71.54 Aligned_cols=213 Identities=14% Similarity=0.157 Sum_probs=121.7
Q ss_pred EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--CceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547 38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGKDKSVVLWS 115 (387)
Q Consensus 38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~~~~~~~~~~l~s~~~d~~i~vwd 115 (387)
+-++ +|++||.- .|..|.|=...+.-. ..+...+.+.+ ..=.-++||||+..||.+...|+|+++|
T Consensus 4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~----------si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFS----------SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFD 71 (282)
T ss_pred eecC-CCcEEEEE-eccEEEEEeccCCch----------heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEe
Confidence 3345 88888775 556677665554411 12222222221 1235799999999999999999999999
Q ss_pred cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-----CeeEEEecC
Q 016547 116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVGD 190 (387)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~ 190 (387)
+...... ...+.... ...-...|.++.|.+-. ...|++-..
T Consensus 72 l~g~~lf-~I~p~~~~---------------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 72 LMGSELF-VIPPAMSF---------------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred cccceeE-EcCccccc---------------------------------CCccccceeeeEeeccccccccceeEEEEec
Confidence 9753221 11110000 00112334444443321 134666677
Q ss_pred CCeEEEEEccCCC---CceeE--Eee-ccCCCeeEEEecCCCCCeEEEeeCC----C-------eEEEEEeccCCC----
Q 016547 191 DSCLILWDARVGT---SPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSAD----N-------SVRMFDRRNLTS---- 249 (387)
Q Consensus 191 dg~i~iwd~~~~~---~~~~~--~~~-~~~~~i~~~~~~~~~~~~l~~~~~d----g-------~i~~~d~~~~~~---- 249 (387)
+|.++-|-+..+. -.... .+. .+...|.++.++| ..++|++|+.. + -+.-|.+-+...
T Consensus 118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 7888777664321 11112 222 2467899999999 77888777642 1 144555433110
Q ss_pred -----CCCC-C----c---eEEe------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547 250 -----NGVG-S----P---INKF------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 250 -----~~~~-~----~---~~~~------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
.... . . +..+ ......|..|..||||. +||+...+|.|.+|++.....
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence 0000 0 0 0010 12356799999999999 578999999999999998543
No 295
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=1.9e-06 Score=71.98 Aligned_cols=257 Identities=12% Similarity=0.082 Sum_probs=139.4
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC----------CCeEEEEEcCCCcCcc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----------DKSVVLWSIQDHITSS 123 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~ 123 (387)
++|.+.|.++. +.+..+..-.. + ..+ ++||++.|+.+.. +..|.+||..+.....
T Consensus 27 ~~v~ViD~~~~------------~v~g~i~~G~~-P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 27 TQVYTIDGEAG------------RVLGMTDGGFL-P-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred ceEEEEECCCC------------EEEEEEEccCC-C-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 89999999988 45555544333 2 234 9999998876654 7899999998765432
Q ss_pred ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-C-CCeEEEEEccC
Q 016547 124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D-DSCLILWDARV 201 (387)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~ 201 (387)
..... .++.. . ....-..++++|+| +++++.. . +..|.+.|+.+
T Consensus 92 ~i~~p------------------------------~~p~~--~-~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 92 DIELP------------------------------EGPRF--L-VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred EEccC------------------------------CCchh--h-ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCC
Confidence 22110 00000 0 01223468899999 5555443 4 79999999999
Q ss_pred CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc-eE---EeccccceEE-EEEEcC-CC
Q 016547 202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-IN---KFEGHSAAVL-CVQWSP-DK 275 (387)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~---~~~~~~~~i~-~~~~~~-~~ 275 (387)
++ .+....- .....-...++ + .. .+-+.||......+... ++. .. .+.....++. .-.|.+ +|
T Consensus 138 ~k--vv~ei~v-p~~~~vy~t~e-~-~~-~~~~~Dg~~~~v~~d~~-----g~~~~~~~~vf~~~~~~v~~rP~~~~~dg 206 (352)
T TIGR02658 138 KA--FVRMMDV-PDCYHIFPTAN-D-TF-FMHCRDGSLAKVGYGTK-----GNPKIKPTEVFHPEDEYLINHPAYSNKSG 206 (352)
T ss_pred Cc--EEEEEeC-CCCcEEEEecC-C-cc-EEEeecCceEEEEecCC-----CceEEeeeeeecCCccccccCCceEcCCC
Confidence 88 4444432 22222222222 1 11 22334555544433331 111 11 1111000000 003455 88
Q ss_pred CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-----ccCCCCeeEEEEccCCCeEEEEecCC-CCC-CC
Q 016547 276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNASDPWTVVSVSDD-CDS-TG 348 (387)
Q Consensus 276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~s~s~d-~~t-g~ 348 (387)
++++++. .|.|.+.|+......... +... ... .-..+...-++++|+++++++..... ..| -.
T Consensus 207 ~~~~vs~--eG~V~~id~~~~~~~~~~-------~~~~-~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 207 RLVWPTY--TGKIFQIDLSSGDAKFLP-------AIEA-FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred cEEEEec--CCeEEEEecCCCcceecc-------eeee-ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 8776554 399999997653222110 0000 000 01233445599999999988743110 000 01
Q ss_pred CCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 349 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..+.|.++|.. +++.+..+.. ...+..++|+|
T Consensus 277 ~~~~V~ViD~~------t~kvi~~i~v-G~~~~~iavS~ 308 (352)
T TIGR02658 277 ASRFLFVVDAK------TGKRLRKIEL-GHEIDSINVSQ 308 (352)
T ss_pred CCCEEEEEECC------CCeEEEEEeC-CCceeeEEECC
Confidence 22589999998 7888887763 45788888876
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.3e-07 Score=83.23 Aligned_cols=249 Identities=16% Similarity=0.135 Sum_probs=166.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC----------
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---------- 99 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~---------- 99 (387)
|...-.++.|+| .| ++|-|+.. .|.+-|..+. +.+..+..|.. .|+.+.|.|-.
T Consensus 14 ~~sN~~A~Dw~~-~G-LiAygshs-lV~VVDs~s~------------q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~ 77 (1062)
T KOG1912|consen 14 SRSNRNAADWSP-SG-LIAYGSHS-LVSVVDSRSL------------QLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS 77 (1062)
T ss_pred CcccccccccCc-cc-eEEEecCc-eEEEEehhhh------------hhhhccccCcc-ceeEEEeccCCCchhccCccc
Confidence 444467888888 44 77777654 7888898887 77788888886 79999998731
Q ss_pred --CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 100 --PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 100 --~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
-.|+++...|.|.+||+..... +..+..|.+++..++|
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~----------------------------------------~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASV----------------------------------------INWLSHSNDSVQDLCW 117 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhh----------------------------------------hhhhcCCCcchhheee
Confidence 2577888889999999975422 2345567888999999
Q ss_pred ccC---CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC-CCC
Q 016547 178 CPS---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-GVG 253 (387)
Q Consensus 178 ~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~ 253 (387)
-+. ...+|+.-....++.+|+..+++ ..-..........|+.++|.+.+.+..-+..|.+.+-+.-....+ ..+
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 763 33567777788899999999998 333333344556779999999999988888898877765433221 112
Q ss_pred CceEEeccccc-------------------------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547 254 SPINKFEGHSA-------------------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 308 (387)
Q Consensus 254 ~~~~~~~~~~~-------------------------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 308 (387)
+.++.-..|.. ....++|+|.-++++ -......+.|+|++-.
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~------------ 262 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYE------------ 262 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhh------------
Confidence 32222222221 012356788766544 3334778999999864
Q ss_pred CCceeeeeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCCCCceEEEEecCC
Q 016547 309 YPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.++....-..+.+.-+.|-|+.+ .|+ ++-.||.+.+|--..
T Consensus 263 ---~~l~vvpier~~akfv~vlP~~~rd~Lf--------clH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 263 ---CCLAVVPIERGGAKFVDVLPDPRRDALF--------CLHSNGRLTIRVRKE 305 (1062)
T ss_pred ---ceeEEEEeccCCcceeEeccCCCcceEE--------EEecCCeEEEEEeec
Confidence 22333333344555666766654 455 566779999997663
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.01 E-value=7.1e-07 Score=72.44 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=133.4
Q ss_pred EEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 92 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 92 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
+..|.+ ++.++++--..+.|..|+..++... .+.. .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------------------------------------~~~~--~ 40 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------------------------------------VIDL--P 40 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------------------------------------EEES--S
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------------------------------------EEec--C
Confidence 678887 6666677667899999998764321 1111 1
Q ss_pred CeEEEEEc-cCCCeeEEEecCCCeEEEEEccCCCCceeEEee--c-cCCCeeEEEecCCCCCeEEEeeCC--------Ce
Q 016547 171 TVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--A-HDADLHCVDWNPLDDNLILTGSAD--------NS 238 (387)
Q Consensus 171 ~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~ 238 (387)
....+.+. +++ .++++ ... .+.++|..+++...+.... . .....+.++++| ++++.++.... |.
T Consensus 41 ~~~G~~~~~~~g-~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 41 GPNGMAFDRPDG-RLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp SEEEEEEECTTS-EEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE
T ss_pred CCceEEEEccCC-EEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc
Confidence 26677777 565 54444 444 4555598887633333332 1 345678999999 89877776544 34
Q ss_pred EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
|..++.. ++ +......-...+.|+|+|+++.|+++-+..+.|..+++........ ....+..+.
T Consensus 117 v~~~~~~-------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~--------~~~~~~~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS--------NRRVFIDFP 180 (246)
T ss_dssp EEEEETT-------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE--------EEEEEEE-S
T ss_pred eEEECCC-------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee--------eeeeEEEcC
Confidence 5555444 12 2222223345789999999998888888999999999975432110 012223333
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
...+..-.+++..+|...++.. ..+.|.+++.+ ++.+.++..-...+++++|
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~--------~~~~I~~~~p~-------G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADW--------GGGRIVVFDPD-------GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEE--------TTTEEEEEETT-------SCEEEEEE-SSSSEEEEEE
T ss_pred CCCcCCCcceEcCCCCEEEEEc--------CCCEEEEECCC-------ccEEEEEcCCCCCEEEEEE
Confidence 3334578899999987655322 23799999877 7777777655568888888
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.1e-08 Score=86.66 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=131.1
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
..+.+.|++++ +.+++-|+-+|.|++.+.... + .....|... ..+|.++++|+.||
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-------------~-~~~~~~s~~-------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-------------P-KTNFDHSSS-------ILEGEYVASCSDDG 93 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCc-------------c-ccccccccc-------ccCCceEEEecCCC
Confidence 45777888874 478999999999999998765 1 223334331 55899999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC----CCeeE
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS----SAQEF 185 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l 185 (387)
+|.|-.+-+..... ......++.+++++|+ ..+.+
T Consensus 94 kv~I~sl~~~~~~~-----------------------------------------~~df~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 94 KVVIGSLFTDDEIT-----------------------------------------QYDFKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred cEEEeeccCCccce-----------------------------------------eEecCCcceeEEeccchhhhhhhhe
Confidence 99998886543321 1123568999999998 23579
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc--
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-- 263 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-- 263 (387)
++|+.-| +.++.-+-.............++|.++.| .++++|=++.+| |++||... .+.+..++...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~------~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPT------RQRLTNIPPPSQS 201 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccc------cceeeccCCCCCC
Confidence 9999988 77776443221122245567789999999 578999988888 89999987 55555554322
Q ss_pred ----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 264 ----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 264 ----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.....+.|.++.+ |+.|- ..+|+|..++.
T Consensus 202 ~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCCCe--EEEec-CCeEEEEEEec
Confidence 2235688888776 33554 44799999884
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.3e-09 Score=84.54 Aligned_cols=271 Identities=11% Similarity=0.068 Sum_probs=173.8
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
.+-|.+.|+.+... ..+++.+++.||.++.|.-..-. ....+..+..|-. .|.+++.+-++..+.|.+
T Consensus 5 symhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLG-VILSLAVSYDGWLFRSVE 72 (558)
T ss_pred hhcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHH-HHHhhhccccceeEeecc
Confidence 34689999888643 56799999999999999755421 1134445666776 788999999999999977
Q ss_pred C-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC--e
Q 016547 107 K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--Q 183 (387)
Q Consensus 107 ~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~ 183 (387)
. |..++++|+++-...... .+..-.+.+. ...++... .
T Consensus 73 d~Dhs~KvfDvEn~Dminmi--------------------------------------KL~~lPg~a~-wv~skGd~~s~ 113 (558)
T KOG0882|consen 73 DPDHSVKVFDVENFDMINMI--------------------------------------KLVDLPGFAE-WVTSKGDKISL 113 (558)
T ss_pred CcccceeEEEeeccchhhhc--------------------------------------ccccCCCceE-EecCCCCeeee
Confidence 7 999999999864221100 0001111111 11122110 2
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc-CCCCC--------CCC
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNG--------VGS 254 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~--------~~~ 254 (387)
+.++.-.++.+.++|-....++.......|.++|..+.+.+ .+..+++....|.|.-|.... .+... ...
T Consensus 114 IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 114 IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 23334467899999988777666677778999999999999 899999999999999998873 11000 001
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC------Ccee-----------eeee
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY------PAGL-----------FFQH 317 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~-----------~~~~ 317 (387)
-+..+........++.|+|++.. +++-+.|..|+++++..+...+......... +..+ -..+
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverel 271 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVEREL 271 (558)
T ss_pred hhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhH
Confidence 11122223456789999999996 5788899999999999865544333211110 0000 0112
Q ss_pred ccCCC-CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~-~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..|.. .-+.+.|...+++|+...- =-|++.++.
T Consensus 272 ek~~~~~~~~~~fdes~~flly~t~---------~gikvin~~ 305 (558)
T KOG0882|consen 272 EKHGSTVGTNAVFDESGNFLLYGTI---------LGIKVINLD 305 (558)
T ss_pred hhhcCcccceeEEcCCCCEEEeecc---------eeEEEEEee
Confidence 22333 3466778888998885322 246777776
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.99 E-value=7.6e-07 Score=82.55 Aligned_cols=237 Identities=15% Similarity=0.250 Sum_probs=132.8
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
+.|.++.|.- +++.++.+..+|.|.+-|.++. ....-|..+..|.+++|+||++.++..+.++++
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~--------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETL--------------ELEIVGNVDNGISAASWSPDEELLALITGRQTL 133 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEccccc--------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEE
Confidence 5899999988 7777888888999999887776 223344444468999999999999888877777
Q ss_pred EEEEcC----CCcCc-cccCCCcccCCCCCCc---eeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 112 VLWSIQ----DHITS-SATDPATAKSAGSSGS---IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 112 ~vwd~~----~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
.+-+-. ..+.. ............+-+. ...-..+.. .........+......- .+.=+.|.|-.|| .
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~---~~~~~~~~ek~~~~~~~-~~~~~~IsWRgDg-~ 208 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQ---AARQKIEKEKALEQIEQ-DDHKTSISWRGDG-E 208 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeeecchhhh---cccccccccccccchhh-ccCCceEEEccCC-c
Confidence 665431 00000 0000000000000000 000000000 00000000000000011 1223468999998 7
Q ss_pred eEEE-----ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEEeccCCCCCCCCc
Q 016547 184 EFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 184 ~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+|++ ......|++||-+ +.. ...-....+.-.+++|-| .|.++++-. .|+.|.+|.-+-... +..
T Consensus 209 ~fAVs~~~~~~~~RkirV~drE-g~L--ns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h---g~f 281 (1265)
T KOG1920|consen 209 YFAVSFVESETGTRKIRVYDRE-GAL--NSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH---GEF 281 (1265)
T ss_pred EEEEEEEeccCCceeEEEeccc-chh--hcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc---ccc
Confidence 7776 2233789999977 431 112222333446899999 898888754 356788887653211 222
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEE---ecCCCeEEEEeCCCC
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLNIWDYEKV 296 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s---~~~d~~i~vwd~~~~ 296 (387)
...+......+..++|+.++. +||. ......|++|-+.+.
T Consensus 282 ~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 222333344589999999998 5666 455566999998774
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.97 E-value=3e-06 Score=68.35 Aligned_cols=204 Identities=13% Similarity=0.193 Sum_probs=127.4
Q ss_pred cEEEEEecCCCCcEEEEecCCCc-EEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-----
Q 016547 33 EVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----- 106 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----- 106 (387)
....++.+|..+..++.+-.-|+ ..+||..+++....+.. ..-+.|.+| -.|++||++|++.-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----~~gRHFyGH-------g~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----PPGRHFYGH-------GVFSPDGRLLYTTENDYET 74 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----CCCCEEecC-------EEEcCCCCEEEEeccccCC
Confidence 34567778877778888877664 56899988843322211 222334444 46899999999864
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
..|.|-|||.... .+.+..+..|--.-..+.+.|++ ..|+
T Consensus 75 g~G~IgVyd~~~~---------------------------------------~~ri~E~~s~GIGPHel~l~pDG-~tLv 114 (305)
T PF07433_consen 75 GRGVIGVYDAARG---------------------------------------YRRIGEFPSHGIGPHELLLMPDG-ETLV 114 (305)
T ss_pred CcEEEEEEECcCC---------------------------------------cEEEeEecCCCcChhhEEEcCCC-CEEE
Confidence 3588999999732 12223444454455567788887 3444
Q ss_pred Ee------------------cCCCeEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCCeEEEeeCCCe-------E
Q 016547 187 SV------------------GDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNS-------V 239 (387)
Q Consensus 187 ~~------------------~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------i 239 (387)
++ ..+..+.+.|..+++......+ ..|...|.-+++.+ ++..++..-..|. |
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLv 193 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLV 193 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeE
Confidence 43 1234455556666662222223 34777899999998 7766555544332 2
Q ss_pred EEEEeccCCCCCCCCceEEe-------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 240 RMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
-+++. +..+..+ ......+-+|++++++..+.+|+-..+.+.+||..+.
T Consensus 194 a~~~~--------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 194 ALHRR--------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EEEcC--------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 22322 2222222 2234678999999999988788888999999999885
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4e-07 Score=81.24 Aligned_cols=204 Identities=9% Similarity=0.134 Sum_probs=134.1
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC---
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--- 109 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--- 109 (387)
.|.|+ ++ .+..++.|+.+|.|.+.+-.- +.++.++.+..+.|..+....+..+|++.+.|+
T Consensus 27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~s~-------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n 90 (933)
T KOG2114|consen 27 AISCC--SS-STGSVVIGTADGRVVILNSSF-------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN 90 (933)
T ss_pred ceeEE--cC-CCceEEEeeccccEEEecccc-------------eeeehheecchhhhhHhhcccCceEEEEEeecCCCC
Confidence 56665 55 677899999999888877432 344667777765344444444446788777664
Q ss_pred --eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc---e----eecCCCCCeEEEEEccC
Q 016547 110 --SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR---G----IYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 110 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~v~~~~~~~~ 180 (387)
.+++|+++....... ...+ . .......++.+++.+.+
T Consensus 91 p~llkiw~lek~~~n~s----------------------------------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~ 136 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKNNS----------------------------------PQCLYEHRIFTIKNPTNPSPASSLAVSED 136 (933)
T ss_pred ceEEEEecccccCCCCC----------------------------------cceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence 489999985421100 0111 0 11123567889999988
Q ss_pred CCeeEEEecCCCeEEEEE--ccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc-eE
Q 016547 181 SAQEFCSVGDDSCLILWD--ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-IN 257 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~ 257 (387)
- ..+++|-.+|.|..+. +...+............+|+.+++.. ++..++-......|.+|.+.. ..+ ..
T Consensus 137 l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g------r~p~~~ 208 (933)
T KOG2114|consen 137 L-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG------RTPSLK 208 (933)
T ss_pred c-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC------CCccee
Confidence 6 8899999999999984 22222112233334567999999987 676644444566799999985 333 44
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.+..|+...+|..|++....++ +++ +..+.+||....
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR 245 (933)
T ss_pred eeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence 4778888999999998766444 443 567999998864
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.3e-06 Score=77.19 Aligned_cols=208 Identities=15% Similarity=0.182 Sum_probs=134.8
Q ss_pred ecCCCcEEEEEecCC-----------CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547 28 IIHPGEVNRIRELPQ-----------NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 96 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~-----------~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~ 96 (387)
..|+..|+.+.|.|. ..-+||++...|.|.+||.... ..+..+..|.+ ++..++|-
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~------------s~~~~l~~~~~-~~qdl~W~ 118 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA------------SVINWLSHSND-SVQDLCWV 118 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh------------hhhhhhcCCCc-chhheeee
Confidence 348899999999882 2236788888999999999988 55566666666 67899997
Q ss_pred C---CC-CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547 97 P---TE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 172 (387)
Q Consensus 97 ~---~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 172 (387)
+ +. ..|+.-..-.++.+|+..++....... ......
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~----------------------------------------ys~~iL 158 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD----------------------------------------YSHEIL 158 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCceeeccc----------------------------------------cCCcce
Confidence 6 33 355655567899999998775433221 223456
Q ss_pred EEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----eeEEeeccCC----------------C---------eeEEEe
Q 016547 173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDA----------------D---------LHCVDW 222 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~----------------~---------i~~~~~ 222 (387)
.|+.+.|.+...+..-+..|.+.+-+.-....+ ..+....|.. . ...++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 678888876666766666777776654321110 1111111211 0 113567
Q ss_pred cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCC
Q 016547 223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~ 295 (387)
+|.-.+.+ .......+.++|++- ..++....-..+.+.-+.+-|+++. .|.+.-.||.+.+|-.+.
T Consensus 239 ~p~~rn~l-fi~~prellv~dle~------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 239 SPHWRNIL-FITFPRELLVFDLEY------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ChhhhceE-EEEeccceEEEcchh------hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 88333443 445677799999997 5666666555566666777776532 345788899999997655
No 304
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.93 E-value=8.8e-10 Score=94.45 Aligned_cols=210 Identities=15% Similarity=0.282 Sum_probs=137.0
Q ss_pred CCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEec--
Q 016547 31 PGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG-- 106 (387)
Q Consensus 31 ~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~-- 106 (387)
...+.|++++-. +..+++.|..+|.|.+-.+...... .-....+|.. ..++++|++ |...||.|-
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar-~Ct~lAwneLDtn~LAagldk 124 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYAR-PCTSLAWNELDTNHLAAGLDK 124 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccc-cccccccccccHHHHHhhhhh
Confidence 455778876653 3468999999999999988766221 1123344444 678999998 455666663
Q ss_pred --CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCe
Q 016547 107 --KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 107 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 183 (387)
.|-.+.|||+.+........+ .+. +......+++|..+. .
T Consensus 125 hrnds~~~Iwdi~s~ltvPke~~------------------------------------~fs~~~l~gqns~cwlrd~-k 167 (783)
T KOG1008|consen 125 HRNDSSLKIWDINSLLTVPKESP------------------------------------LFSSSTLDGQNSVCWLRDT-K 167 (783)
T ss_pred hcccCCccceecccccCCCcccc------------------------------------ccccccccCccccccccCc-c
Confidence 356799999986532110000 000 122344578888665 7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE-eccCCCCCCCCceEEeccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~~~~~~~~~~~~~~~~ 262 (387)
++++|.....++++|++.... ....-....+..+.++|..++++++-. ||.|-+|| .++. ..++..+...
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~---~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni-----enpl~~i~~~ 238 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLD---SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI-----ENPLQIILRN 238 (783)
T ss_pred hhhcccccchhhhhhhhhhhh---hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh-----ccHHHHHhhC
Confidence 888998889999999985441 111223345667888887788887765 99999999 4442 2333333211
Q ss_pred ----cceEEEEEEcCCCCeeEEEecC-CCeEEEEeCCCCC
Q 016547 263 ----SAAVLCVQWSPDKSSVFGSSAE-DGLLNIWDYEKVG 297 (387)
Q Consensus 263 ----~~~i~~~~~~~~~~~ll~s~~~-d~~i~vwd~~~~~ 297 (387)
...+..++|+|...-++++... .++|+++|+....
T Consensus 239 ~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 239 ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred CCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 2348999999987666777765 4789999987643
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.5e-08 Score=81.28 Aligned_cols=231 Identities=11% Similarity=0.065 Sum_probs=150.7
Q ss_pred cCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 85 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 85 h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
|.+ .|+.+. ..-.+++++++.||.++.|.-... ...+.+..
T Consensus 8 hrd-~i~hv~-~tka~fiiqASlDGh~KFWkKs~i-------------------------------------sGvEfVKh 48 (558)
T KOG0882|consen 8 HRD-VITHVF-PTKAKFIIQASLDGHKKFWKKSRI-------------------------------------SGVEFVKH 48 (558)
T ss_pred ccc-eeeeEe-eehhheEEeeecchhhhhcCCCCc-------------------------------------cceeehhh
Confidence 444 444433 335679999999999999975421 11223355
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecC-CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC-CeEEE-eeCCCeEEE
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILT-GSADNSVRM 241 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~-~~~dg~i~~ 241 (387)
+..|...|.+++.+-++ .++.+.+. |..++++|+..-.......+..-++.+..+ .++.+. ..+++ ...+|.|.+
T Consensus 49 FraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred hHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEE
Confidence 67788899999999998 88888777 999999999876633223332223322222 222111 13333 345789999
Q ss_pred EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547 242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 321 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
+|-+... .+....-+-|..+|.++.+++.+.. +++....|.|.-|.....-+...............+..+....
T Consensus 127 vD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 127 VDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred ECCcCCc----CccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 9988632 2444455668999999999999985 5688888999999987411111100000011112233344456
Q ss_pred CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547 322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 375 (387)
Q Consensus 322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 375 (387)
...+++.|+|++..+. +-+.|..|+++.+. ++++++++..
T Consensus 202 t~pts~Efsp~g~qis--------tl~~DrkVR~F~~K------tGklvqeiDE 241 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQIS--------TLNPDRKVRGFVFK------TGKLVQEIDE 241 (558)
T ss_pred cCccceEEccccCccc--------ccCcccEEEEEEec------cchhhhhhhc
Confidence 6789999999999877 66677999999999 7887777653
No 306
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=2.2e-09 Score=92.05 Aligned_cols=208 Identities=17% Similarity=0.266 Sum_probs=137.5
Q ss_pred eEEEEECCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 90 EFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 90 v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
+.|+++.-+. ..++.|..+|.|.+-.++..... .-....+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------------s~E~tp~ 100 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------------SAEVTPG 100 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------------cceeccc
Confidence 5677776544 46788999999999888753221 1133456
Q ss_pred CCCCeEEEEEccCCCeeEEEec----CCCeEEEEEccCCCCcee--EEee-ccCCCeeEEEecCCCCCeEEEeeCCCeEE
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTSPVI--KVEK-AHDADLHCVDWNPLDDNLILTGSADNSVR 240 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 240 (387)
+..+.++++|++-+.+.|+.|- .|..+.|||+.+.-.... -.+. .......+++|.. +..++++|.....+.
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVH 179 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhh
Confidence 7888999999987656777764 467899999987621011 1111 2334556889986 899999999999999
Q ss_pred EEEeccCCCCCCCCceEEeccccceEEEEEEcC-CCCeeEEEecCCCeEEEEe-CCCCCceeccCCCCCCCCceeeeeec
Q 016547 241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWD-YEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
++|+|.. ......+ ....+..+...| .+.| + +...||.|.+|| .++.+.+.......+ .
T Consensus 180 ifdlRqs-----~~~~~sv--nTk~vqG~tVdp~~~nY-~-cs~~dg~iAiwD~~rnienpl~~i~~~~----------N 240 (783)
T KOG1008|consen 180 IFDLRQS-----LDSVSSV--NTKYVQGITVDPFSPNY-F-CSNSDGDIAIWDTYRNIENPLQIILRNE----------N 240 (783)
T ss_pred hhhhhhh-----hhhhhhh--hhhhcccceecCCCCCc-e-eccccCceeeccchhhhccHHHHHhhCC----------C
Confidence 9999941 1222222 234566788888 4444 5 444599999999 444333322111111 1
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
.....+..++|+|...-++++++.|. ++|+++++...
T Consensus 241 ~~~~~l~~~aycPtrtglla~l~RdS------~tIrlydi~~v 277 (783)
T KOG1008|consen 241 KKPKQLFALAYCPTRTGLLAVLSRDS------ITIRLYDICVV 277 (783)
T ss_pred CcccceeeEEeccCCcchhhhhccCc------ceEEEeccccc
Confidence 11225899999999888888877663 89999998754
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=7.6e-09 Score=56.85 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=35.2
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 115 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 115 (387)
+++..+.+|.+ .|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 45778999998 799999999999999999999999997
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.6e-07 Score=74.38 Aligned_cols=161 Identities=9% Similarity=0.114 Sum_probs=101.1
Q ss_pred CCeEEEeccCCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 155 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (387)
+....+.+|.. .|..++|+|..+ .+..++.+.+|.|.|+++....
T Consensus 184 kssq~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------------------------- 229 (463)
T KOG1645|consen 184 KSSQILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------------------------- 229 (463)
T ss_pred chhhcccccch-hhhhhccCccccceeeeeccCceEEEEecccceee---------------------------------
Confidence 44455666665 799999999877 7888999999999999875433
Q ss_pred CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee-ccCCCeeEEEecCC-----CCCe
Q 016547 156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL-----DDNL 229 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~~ 229 (387)
..+..+ ..+++++|.-+..+++..|...|.|.+||++..+.+...... -...+|..++.-+. .+.+
T Consensus 230 -------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 230 -------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred -------eheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence 233344 679999999988889999999999999999987643222111 12234444433220 2444
Q ss_pred EEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC
Q 016547 230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 284 (387)
Q Consensus 230 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~ 284 (387)
|+....+ +..|....... ...++..+. ..+...+++..+..++++++.-.
T Consensus 302 Lv~~lt~--l~f~ei~~s~~--~~p~vlele-~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 302 LVFALTV--LQFYEIVFSAE--CLPCVLELE-PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred EEeeehh--hhhhhhhcccc--CCCcccccC-CCcceeeeeecCccceEEEEecC
Confidence 4443333 34555443211 023333333 34556677777766667766543
No 309
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=2.8e-06 Score=73.86 Aligned_cols=272 Identities=14% Similarity=0.079 Sum_probs=140.3
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 123 (387)
+..+.+++.+|.|.-+|..+++ .+........ ....... ++..++.++.++.+..+|.+++....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~------------~~W~~~~~~~-~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W 129 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK------------RLWRVDLDER-LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELW 129 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc------------EeeeecCCCC-cccceEE--cCCEEEEEcCCCEEEEEECCCCcEee
Confidence 4567788888999999998883 3222222211 1112222 46678888889999999998876554
Q ss_pred ccCCCcccC--CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe-----EEEEEccCCCeeEEEecCCCeEEE
Q 016547 124 ATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLIL 196 (387)
Q Consensus 124 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~i 196 (387)
......... +......+... ...+.+..++..+++.+-.+......+ ...... + ..++.+..++.+..
T Consensus 130 ~~~~~~~~~~~p~v~~~~v~v~--~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~--~~v~~~~~~g~v~a 204 (377)
T TIGR03300 130 RAKLSSEVLSPPLVANGLVVVR--TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D--GGVLVGFAGGKLVA 204 (377)
T ss_pred eeccCceeecCCEEECCEEEEE--CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C--CEEEEECCCCEEEE
Confidence 333221110 00001111111 112333333444443333222211111 011111 2 35677888899999
Q ss_pred EEccCCCCceeEEeeccC--CCe---eEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEE
Q 016547 197 WDARVGTSPVIKVEKAHD--ADL---HCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270 (387)
Q Consensus 197 wd~~~~~~~~~~~~~~~~--~~i---~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (387)
+|.++++..-........ ..+ ..+.-+| ..+..+++++.+|.++.||..+ ++.+-.... . ......
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~-~-~~~~p~ 276 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA-S-SYQGPA 276 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc-C-CccCce
Confidence 999888721111110000 000 0010011 0345777888899999999987 766655441 1 112222
Q ss_pred EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547 271 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGG 349 (387)
Q Consensus 271 ~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~ 349 (387)
. .+..++ .++.+|.+..+|..++...- .... ......+... .+..++ +++.
T Consensus 277 ~--~~~~vy-v~~~~G~l~~~d~~tG~~~W---------------~~~~~~~~~~ssp~i--~g~~l~--------~~~~ 328 (377)
T TIGR03300 277 V--DDNRLY-VTDADGVVVALDRRSGSELW---------------KNDELKYRQLTAPAV--VGGYLV--------VGDF 328 (377)
T ss_pred E--eCCEEE-EECCCCeEEEEECCCCcEEE---------------ccccccCCccccCEE--ECCEEE--------EEeC
Confidence 2 344454 66789999999998753221 1100 0011112122 245666 5566
Q ss_pred CceEEEEecCCCcccccchhhhhhhccC
Q 016547 350 GGTLQIWRMSDLIYRPQDEVLAELEKFK 377 (387)
Q Consensus 350 dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 377 (387)
||.|+++|.. +++.+.++..+.
T Consensus 329 ~G~l~~~d~~------tG~~~~~~~~~~ 350 (377)
T TIGR03300 329 EGYLHWLSRE------DGSFVARLKTDG 350 (377)
T ss_pred CCEEEEEECC------CCCEEEEEEcCC
Confidence 6999999988 677776666444
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=9.6e-09 Score=56.43 Aligned_cols=38 Identities=34% Similarity=0.835 Sum_probs=34.8
Q ss_pred CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
+++.++++|...|++++|+|++.+ |++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~-~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNF-LASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSE-EEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccccc-ceeeCCCCEEEEEC
Confidence 577899999999999999999885 67999999999997
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=2.1e-07 Score=83.51 Aligned_cols=184 Identities=10% Similarity=0.188 Sum_probs=128.2
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 124 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 124 (387)
..++.|+-...+..+|+.+. +.......... .|+-+.. +++++.+|...|+|.+-|.++
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~------------~e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s------ 206 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTE------------KETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNS------ 206 (1118)
T ss_pred cceeecchhhheeeeecccc------------eeeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCc------
Confidence 34555555556666777666 33333333332 3445544 678899999999999988864
Q ss_pred cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC---------CCeEE
Q 016547 125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---------DSCLI 195 (387)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~ 195 (387)
.+.+..+..|++.|.++... | ++|++|+. |..|+
T Consensus 207 ----------------------------------~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 207 ----------------------------------FETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred ----------------------------------Cceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhh
Confidence 45568889999999887775 4 67888875 56689
Q ss_pred EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547 196 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 275 (387)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (387)
+||++..+ .+..+.-+.+ ..-+.|.|.-...+++++..|...+.|..+..+. ...+.-+......+..+.+++++
T Consensus 250 VYDLRmmr--al~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 250 VYDLRMMR--ALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNG 324 (1118)
T ss_pred hhhhhhhh--ccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCC
Confidence 99999877 3333333333 2567788866789999999999999995443211 12233334445669999999999
Q ss_pred CeeEEEecCCCeEEEEe
Q 016547 276 SSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 276 ~~ll~s~~~d~~i~vwd 292 (387)
.. +|.|..+|.|.+|-
T Consensus 325 ~a-lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DA-LAFGDHEGHVNLWA 340 (1118)
T ss_pred ce-EEEecccCcEeeec
Confidence 95 68999999999998
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=2.9e-07 Score=82.63 Aligned_cols=154 Identities=13% Similarity=0.191 Sum_probs=113.6
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---------CCeEE
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVR 240 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~ 240 (387)
..|.-++.+ + +.+.+|...|+|.+-|.++.+ .+..+..|.+.|..+.. .|++|++++. |.-|+
T Consensus 178 ~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 178 SGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred CceEEEEec--C-cEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhh
Confidence 345555553 3 779999999999999999888 78899999999988776 6788888874 55689
Q ss_pred EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547 241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
+||+|+ .+.+.-+.-+-++ .-+.|.|.-...+|.++..|...+-|......+. .-+......
T Consensus 250 VYDLRm------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-----------~~~~~v~p~ 311 (1118)
T KOG1275|consen 250 VYDLRM------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-----------AGVKMVNPN 311 (1118)
T ss_pred hhhhhh------hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc-----------cceeEEccC
Confidence 999998 4444444333333 4577888765567788889999999955443321 113333344
Q ss_pred CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~ 357 (387)
...+.+++++++++.++ -|..+|.|.+|.
T Consensus 312 ~s~i~~fDiSsn~~ala--------fgd~~g~v~~wa 340 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALA--------FGDHEGHVNLWA 340 (1118)
T ss_pred CCcceeEEecCCCceEE--------EecccCcEeeec
Confidence 45699999999999887 778889999998
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.1e-06 Score=70.15 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=66.2
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEe
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG 105 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~ 105 (387)
..+|...|..++|+|.+..++..++.+..|+|.|+++. ..+..+..|. .+++++|..|.. ++..|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------------~~vssy~a~~--~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------------CVVSSYIAYN--QIWSCCWDLDERHVIYAG 254 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccc------------eeeeheeccC--CceeeeeccCCcceeEEe
Confidence 34578899999999966668999999999999999998 6666777774 689999988754 67778
Q ss_pred cCCCeEEEEEcCCC
Q 016547 106 GKDKSVVLWSIQDH 119 (387)
Q Consensus 106 ~~d~~i~vwd~~~~ 119 (387)
...|.|.+||++..
T Consensus 255 l~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQP 268 (463)
T ss_pred ccCceEEEEEccCC
Confidence 88999999999864
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=1.2e-08 Score=91.08 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=134.1
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
..|...-+|++|+- +.+.|+.|+-.|.|+++++.++ ........|.. +|+-+.-+.+|..+++.+.
T Consensus 1098 rd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG------------~~e~s~ncH~S-avT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSG------------SMEESVNCHQS-AVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred hccccceeeEEeec-CCceEEeeeccceEEEEEccCc------------ccccccccccc-ccccccccCCcceeeeecc
Confidence 35888899999998 8899999999999999999999 56667888887 7999999999998776654
Q ss_pred CC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 108 DK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 108 d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
-. -..+|++.. .+.+...+ ..-.++.|+... +.-
T Consensus 1164 ~S~PlsaLW~~~s---------------------------------------~~~~~Hsf----~ed~~vkFsn~~-q~r 1199 (1516)
T KOG1832|consen 1164 SSSPLSALWDASS---------------------------------------TGGPRHSF----DEDKAVKFSNSL-QFR 1199 (1516)
T ss_pred ccCchHHHhcccc---------------------------------------ccCccccc----cccceeehhhhH-HHH
Confidence 33 467898863 11222222 234678888765 444
Q ss_pred EEecCCCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
+.|+.-....+||+.+... +...+. +....-++..|+| +..+++ .||. +||.+. .+.++.|...
T Consensus 1200 ~~gt~~d~a~~YDvqT~~~-l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~------~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSP-LQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRI------PEAIHRFDQF 1266 (1516)
T ss_pred HhcccccceEEEecccCcH-HHHhcCcchhhhhhccccccCC-CcceEe---eCce--eeeecc------HHHHhhhhhh
Confidence 5555556799999998872 211111 1222236788999 666654 5664 699998 6777777655
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
...+ .-.|+|.|..++ .- -.|||+++.
T Consensus 1267 t~~~-~G~FHP~g~eVI-IN-----SEIwD~RTF 1293 (1516)
T KOG1832|consen 1267 TDYG-GGGFHPSGNEVI-IN-----SEIWDMRTF 1293 (1516)
T ss_pred eecc-cccccCCCceEE-ee-----chhhhhHHH
Confidence 4322 446999998765 33 248999985
No 315
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.69 E-value=7.8e-06 Score=71.07 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=62.3
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
..++.++.+|.+..+|.++++ ..-... .. ....... .+..+++++.+|.+..+|..+ ++.+-+....
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~--~~W~~~-~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~ 308 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGR--VLWKRD-AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDEL 308 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCc--EEEeec-cC-CccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccc
Confidence 357777789999999999887 222222 11 1122222 456778888999999999987 6666544221
Q ss_pred cc-eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 263 SA-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 263 ~~-~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.. ....... .+..+ .+++.+|.|.++|..++
T Consensus 309 ~~~~~ssp~i--~g~~l-~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 309 KYRQLTAPAV--VGGYL-VVGDFEGYLHWLSREDG 340 (377)
T ss_pred cCCccccCEE--ECCEE-EEEeCCCEEEEEECCCC
Confidence 11 1222222 24444 57888999999998875
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=2.2e-05 Score=67.93 Aligned_cols=150 Identities=15% Similarity=0.281 Sum_probs=95.9
Q ss_pred eEEEEEccCCCeeEEEe----cCCCe----EEEEEccCCCCcee-EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 172 VEDVTFCPSSAQEFCSV----GDDSC----LILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~----~~dg~----i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
..++.|+-..++.+.+. +.+|. -.+|++...+.... .......+.+.+.+++| +...|+.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 35677776554555553 23443 34666665542222 22235778999999999 99999999999999999
Q ss_pred EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee---ecc
Q 016547 243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ---HAG 319 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 319 (387)
|... + +..+....-.++.++|+|+|. ++++|+..|.+.+||+.-..-....... . ..+..... +-.
T Consensus 287 D~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsE-d-~~P~~~L~Ls~yf~ 355 (545)
T PF11768_consen 287 DTTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSE-D-ATPKSTLQLSKYFR 355 (545)
T ss_pred EcCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccc-c-CCCccEEeeehhcc
Confidence 9876 3 222223456688999999999 5679999999999998764332211111 1 11111222 223
Q ss_pred CCCCeeEEEEccCC
Q 016547 320 HRDKVVDFHWNASD 333 (387)
Q Consensus 320 ~~~~v~~~~~~~~~ 333 (387)
+...+..+.|.+..
T Consensus 356 ~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 356 VSSSLVHIQWAPAP 369 (545)
T ss_pred CcchhheeEeccCC
Confidence 45577888888543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=9.8e-06 Score=72.78 Aligned_cols=199 Identities=13% Similarity=0.141 Sum_probs=127.3
Q ss_pred EEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547 93 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 172 (387)
Q Consensus 93 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 172 (387)
-+|++.+..++.|+.+|.|.+.+-. .+.+..+..+...+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-----------------------------------------~~~~~~fqa~~~si 67 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-----------------------------------------FQLIRGFQAYEQSI 67 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-----------------------------------------ceeeehheecchhh
Confidence 4567888899999999998887643 11223344555552
Q ss_pred EEEEEccCCCeeEEEecCCC-----eEEEEEccCCCC---c-ee---EEe----eccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 173 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTS---P-VI---KVE----KAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~---~-~~---~~~----~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
-..-|.-++..+|++.+.|+ .+++||++..+. | ++ +.+ +....++.+++++. +-..+|+|-.+
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~n 146 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTN 146 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecC
Confidence 22333333335677766554 599999976421 1 22 111 12356788999998 89999999999
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
|.|.++.-.-.... +....-...-..+|+.+++..++.. +||+. -..|.+|.+.... + ...
T Consensus 147 G~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~-p-------------~~~ 208 (933)
T KOG2114|consen 147 GLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRT-P-------------SLK 208 (933)
T ss_pred cEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCC-c-------------cee
Confidence 99998854321110 2222222223578999999999886 34333 4579999998532 1 234
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.+..|...+.+..+++....++++.+ ..|.+|+.+.
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~ 244 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDG 244 (933)
T ss_pred eeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCC
Confidence 46677788999999986664554333 5899999883
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.64 E-value=2.5e-05 Score=62.17 Aligned_cols=212 Identities=16% Similarity=0.249 Sum_probs=116.0
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE--EeccCCCceEEEEECCCCCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.+-+-...+..|+|.|+++.++++....+.|...+.+ + +.+.. +.+..+ .-.|++..++.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G------------~vlr~i~l~g~~D--~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G------------KVLRRIPLDGFGD--YEGITYLGNGRYVL 80 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------------EEEEEE-SS-SS--EEEEEE-STTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C------------CEEEEEeCCCCCC--ceeEEEECCCEEEE
Confidence 3345566799999999778888888889999888875 3 22333 444443 57999998898888
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+--.++.+.+.++............ ... .+.....+...+-.++|.+.+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~----------------------------~~~-~l~~~~~~N~G~EGla~D~~~~~ 131 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADV----------------------------QKI-SLGFPNKGNKGFEGLAYDPKTNR 131 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEE----------------------------EEE-E---S---SS--EEEEEETTTTE
T ss_pred EEcCCCcEEEEEEeccccccchhhc----------------------------eEE-ecccccCCCcceEEEEEcCCCCE
Confidence 8878999999998543211100000 000 00011234566899999998745
Q ss_pred eEEEecCCCeEEEEEccC--C-CCceeEE------eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 184 EFCSVGDDSCLILWDARV--G-TSPVIKV------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~--~-~~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
|+.+-...-..+|.+.. . ....... .......+.+++++|..+.+++.+.....|..+|.. ++
T Consensus 132 -L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-------G~ 203 (248)
T PF06977_consen 132 -LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-------GR 203 (248)
T ss_dssp -EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---------
T ss_pred -EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-------CC
Confidence 44555555566776654 1 1101111 112334578999999778888888889999999944 66
Q ss_pred ceEEecccc---------ceEEEEEEcCCCCeeEEEecCCCeEEEE
Q 016547 255 PINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIW 291 (387)
Q Consensus 255 ~~~~~~~~~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vw 291 (387)
++..+.-.. ...-.|+|.++|. |+++ ++-+..++|
T Consensus 204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEE-ETTTEEEEE
T ss_pred EEEEEEeCCcccCcccccCCccEEEECCCCC-EEEE-cCCceEEEe
Confidence 655543211 2467899999997 5534 455555444
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=1.8e-05 Score=63.98 Aligned_cols=212 Identities=14% Similarity=0.106 Sum_probs=117.3
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
+|+|..||..++ +.+....--. .....+. ..+++.++++++.++.+..||..+++.......
T Consensus 2 ~g~l~~~d~~tG------------~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---- 64 (238)
T PF13360_consen 2 DGTLSALDPRTG------------KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---- 64 (238)
T ss_dssp TSEEEEEETTTT------------EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC----
T ss_pred CCEEEEEECCCC------------CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec----
Confidence 678888888877 3333332211 1111111 233566777778899999999987654322211
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-e
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-E 210 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 210 (387)
...+.......+ ..++.++.++.+..+|..+++ .... .
T Consensus 65 -------------------------------------~~~~~~~~~~~~--~~v~v~~~~~~l~~~d~~tG~--~~W~~~ 103 (238)
T PF13360_consen 65 -------------------------------------PGPISGAPVVDG--GRVYVGTSDGSLYALDAKTGK--VLWSIY 103 (238)
T ss_dssp -------------------------------------SSCGGSGEEEET--TEEEEEETTSEEEEEETTTSC--EEEEEE
T ss_pred -------------------------------------cccccceeeecc--cccccccceeeeEecccCCcc--eeeeec
Confidence 111111112223 345566678899999999988 3333 2
Q ss_pred eccC--C-CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce----------E-EEEEEcCCCC
Q 016547 211 KAHD--A-DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA----------V-LCVQWSPDKS 276 (387)
Q Consensus 211 ~~~~--~-~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~----------i-~~~~~~~~~~ 276 (387)
.... . ......... .+..++++..++.|..+|.++ ++.+......... + ..+.+. ++
T Consensus 104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 174 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG- 174 (238)
T ss_dssp E-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred cccccccccccccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence 2111 1 112223333 477888888899999999998 8887776543311 1 223333 44
Q ss_pred eeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547 277 SVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 355 (387)
Q Consensus 277 ~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i 355 (387)
.++ .++.++. +.+ |+.++.. +.... ...+..+ ...++..+++.. .++.|..
T Consensus 175 ~v~-~~~~~g~~~~~-d~~tg~~---------------~w~~~--~~~~~~~-~~~~~~~l~~~~--------~~~~l~~ 226 (238)
T PF13360_consen 175 RVY-VSSGDGRVVAV-DLATGEK---------------LWSKP--ISGIYSL-PSVDGGTLYVTS--------SDGRLYA 226 (238)
T ss_dssp EEE-EECCTSSEEEE-ETTTTEE---------------EEEEC--SS-ECEC-EECCCTEEEEEE--------TTTEEEE
T ss_pred EEE-EEcCCCeEEEE-ECCCCCE---------------EEEec--CCCccCC-ceeeCCEEEEEe--------CCCEEEE
Confidence 455 4555664 555 8888531 11111 1222221 345677777433 4599999
Q ss_pred EecC
Q 016547 356 WRMS 359 (387)
Q Consensus 356 w~~~ 359 (387)
||+.
T Consensus 227 ~d~~ 230 (238)
T PF13360_consen 227 LDLK 230 (238)
T ss_dssp EETT
T ss_pred EECC
Confidence 9999
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=6.4e-06 Score=73.35 Aligned_cols=189 Identities=13% Similarity=0.237 Sum_probs=123.0
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.++|+++ .+++|+-|..+|.|++.+.+... .....|
T Consensus 41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~~~ 76 (846)
T KOG2066|consen 41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNFDH 76 (846)
T ss_pred HHHHHHh--hcceeeeccccceEEEEecCCcc------------------------------------------cccccc
Confidence 3556666 46899999999999999986321 111223
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC----CCCeEEEeeCCCeEEEEEe
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~~~d~ 244 (387)
+.. .-+| .++++|+.||.|.|-.+-+.+.. .. .....++.+++++|. ..+.+++|+..| +.++.-
T Consensus 77 s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~--~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er 145 (846)
T KOG2066|consen 77 SSS------ILEG-EYVASCSDDGKVVIGSLFTDDEI--TQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER 145 (846)
T ss_pred ccc------ccCC-ceEEEecCCCcEEEeeccCCccc--ee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence 322 3455 78999999999999998887732 22 234578999999993 267899999999 878776
Q ss_pred ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (387)
+-..+ ...+ .+....++|.++.|..+ ++|=++++| |+|||+...... ...+.... ....+...
T Consensus 146 ~wlgn---k~~v-~l~~~eG~I~~i~W~g~---lIAWand~G-v~vyd~~~~~~l-~~i~~p~~--------~~R~e~fp 208 (846)
T KOG2066|consen 146 NWLGN---KDSV-VLSEGEGPIHSIKWRGN---LIAWANDDG-VKVYDTPTRQRL-TNIPPPSQ--------SVRPELFP 208 (846)
T ss_pred hhhcC---ccce-eeecCccceEEEEecCc---EEEEecCCC-cEEEecccccee-eccCCCCC--------CCCcccCC
Confidence 54321 1222 45566789999999755 566666554 999999884332 22111110 00111233
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..+.|.++...++ |...+|+|..++
T Consensus 209 phl~W~~~~~LVI----------GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQDEDRLVI----------GWGDSVKICSIK 233 (846)
T ss_pred CceEecCCCeEEE----------ecCCeEEEEEEe
Confidence 5678888655433 333589999888
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=4.8e-05 Score=61.54 Aligned_cols=213 Identities=14% Similarity=0.180 Sum_probs=127.8
Q ss_pred EEEEECC-CCCEEEEecCCC-eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 91 FALAMCP-TEPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 91 ~~~~~~~-~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
..++.+| .+..++.+-.-| ...+||..++........ ..-..|.+|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a--------------------------------~~gRHFyGH 55 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA--------------------------------PPGRHFYGH 55 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC--------------------------------CCCCEEecC
Confidence 3567777 444555555555 466788876644322111 111445555
Q ss_pred CCCeEEEEEccCCCeeEEEe-----cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---------
Q 016547 169 EDTVEDVTFCPSSAQEFCSV-----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--------- 234 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------- 234 (387)
-.|+++| ++|++. ...|.|-+||....- ..+..+..|.-....+.+.| ++..|+++.
T Consensus 56 ------g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~ 126 (305)
T PF07433_consen 56 ------GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDS 126 (305)
T ss_pred ------EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCccc
Confidence 4799999 556554 345889999998332 35667777777788899999 887777763
Q ss_pred ---------CCCeEEEEEeccCCCCCCCCceEE--e--ccccceEEEEEEcCCCCeeEEEecCCCe-------EEEEeCC
Q 016547 235 ---------ADNSVRMFDRRNLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAEDGL-------LNIWDYE 294 (387)
Q Consensus 235 ---------~dg~i~~~d~~~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~-------i~vwd~~ 294 (387)
.+-++.+.|..+ ++.+.+ + .-|...|..+++.++|.- +...-..|. +-+++..
T Consensus 127 GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V-~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 127 GRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGTV-AFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred CceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCcE-EEEEecCCCCCccCCeEEEEcCC
Confidence 122344445555 666655 3 236778999999999873 323322221 2233222
Q ss_pred CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
..-.... .+ -.....-.+.+-++++++++..++++ +-..|.+.+||.. +++.+....
T Consensus 200 ~~~~~~~-------~p---~~~~~~l~~Y~gSIa~~~~g~~ia~t-------sPrGg~~~~~d~~------tg~~~~~~~ 256 (305)
T PF07433_consen 200 GALRLLP-------AP---EEQWRRLNGYIGSIAADRDGRLIAVT-------SPRGGRVAVWDAA------TGRLLGSVP 256 (305)
T ss_pred Ccceecc-------CC---hHHHHhhCCceEEEEEeCCCCEEEEE-------CCCCCEEEEEECC------CCCEeeccc
Confidence 2100000 00 00112334688999999999988874 4455999999998 677665543
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.8e-07 Score=83.79 Aligned_cols=175 Identities=12% Similarity=0.201 Sum_probs=124.5
Q ss_pred CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-
Q 016547 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN- 237 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg- 237 (387)
++....+..|+...+|++|+... ++++.|+..|.|+++++.++. .......|.+.|+-+.-+. ++..+++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence 34456677888999999999887 899999999999999999988 4566778999999999888 888777766544
Q ss_pred -eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547 238 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 316 (387)
Q Consensus 238 -~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 316 (387)
-..+|++... +.+.+++... .++.|+.....- +.|.......+||+.+....... +..
T Consensus 1167 PlsaLW~~~s~-----~~~~Hsf~ed----~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~ty-----------lt~ 1225 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDED----KAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTY-----------LTD 1225 (1516)
T ss_pred chHHHhccccc-----cCcccccccc----ceeehhhhHHHH-HhcccccceEEEecccCcHHHHh-----------cCc
Confidence 4678999863 6777777642 468888765432 34555567899999986544321 111
Q ss_pred eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC
Q 016547 317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 377 (387)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 377 (387)
..+..-.-+...|+|+...++ +.=.+||++ ..+-++.+....
T Consensus 1226 ~~~~~y~~n~a~FsP~D~LIl-------------ndGvLWDvR------~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLIL-------------NDGVLWDVR------IPEAIHRFDQFT 1267 (1516)
T ss_pred chhhhhhccccccCCCcceEe-------------eCceeeeec------cHHHHhhhhhhe
Confidence 111222336778999888777 444689998 456666665443
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=2.4e-06 Score=73.59 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=64.7
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
....+..+..|.|++++| +.+.|+.|+.||+|.+||...+ . ..+....- ..+.++|+|+|..++
T Consensus 252 svtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~------------~--t~~~ka~~-~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRG------------V--TLLAKAEF-IPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCC------------e--eeeeeecc-cceEEEEcCCCcEEE
Confidence 455667999999999999 8889999999999999998766 1 11222222 457999999999999
Q ss_pred EecCCCeEEEEEcCC
Q 016547 104 SGGKDKSVVLWSIQD 118 (387)
Q Consensus 104 s~~~d~~i~vwd~~~ 118 (387)
+|+..|.+.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999874
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=0.00022 Score=67.06 Aligned_cols=204 Identities=11% Similarity=0.210 Sum_probs=126.7
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.|.++.|..+..-++.+..+|.|.+-|.++... .....-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------------------eivg~v 108 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------------------EIVGNV 108 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------------------eeeeec
Confidence 688999999998888888899999988765322 222233
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEcc----CCCC-----------------ceeEEeec---------------
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGTS-----------------PVIKVEKA--------------- 212 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~-----------------~~~~~~~~--------------- 212 (387)
...|.+++|+||. ..++..+..+++.+-.-. ..+. .....+.+
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 5789999999998 777777777776654320 0000 00001110
Q ss_pred ------cCCCeeEEEecCCCCCeEEEee-----CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547 213 ------HDADLHCVDWNPLDDNLILTGS-----ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 213 ------~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s 281 (387)
..+.=++|.|-- +|.++|+.. ..+.|++||... ..-..-..-.+.-.+++|-|.|.. +|+
T Consensus 188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs~-iA~ 258 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGSL-IAA 258 (1265)
T ss_pred cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCCe-Eee
Confidence 011124588988 999999843 337999999872 111111112233458999999984 454
Q ss_pred ec---CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 282 SA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 282 ~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
-. .|+.|.+|.-+..... .....+......|..++|+.++..|++-. +......|++|-+
T Consensus 259 iq~~~sd~~IvffErNGL~hg------------~f~l~~p~de~~ve~L~Wns~sdiLAv~~-----~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERNGLRHG------------EFVLPFPLDEKEVEELAWNSNSDILAVVT-----SNLENSLVQLWTT 321 (1265)
T ss_pred eeecCCCCcEEEEecCCcccc------------ccccCCcccccchheeeecCCCCceeeee-----cccccceEEEEEe
Confidence 42 4567888886543211 11222233344599999999998777533 2334455999998
Q ss_pred CC
Q 016547 359 SD 360 (387)
Q Consensus 359 ~~ 360 (387)
.+
T Consensus 322 ~N 323 (1265)
T KOG1920|consen 322 GN 323 (1265)
T ss_pred cC
Confidence 74
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.40 E-value=7.7e-05 Score=64.10 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=83.0
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc-ccCCCccc-------CCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVG 160 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (387)
.|+.+.|.++..-|+.+...|.|.+|.....+... ...+.... .......+......... .-.....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~-----~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPP-----SLKEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--T-----T-SEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCc-----ccccccC
Confidence 47899999999999999999999999987653332 00000000 00001111110000000 0001134
Q ss_pred CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE--eec------cCCCeeEEEecC----CC--
Q 016547 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--EKA------HDADLHCVDWNP----LD-- 226 (387)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~------~~~~i~~~~~~~----~~-- 226 (387)
+...+....++|++++.+.-| +++.|..+|.+.|.|+|... .+.. +.. ....++++.|.. .+
T Consensus 78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 555666678999999999777 89999999999999998765 2222 112 234577787752 12
Q ss_pred -CCeEEEeeCCCeEEEEEec
Q 016547 227 -DNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 227 -~~~l~~~~~dg~i~~~d~~ 245 (387)
.-.+++|+..|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 2588899999999999885
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.35 E-value=0.0003 Score=60.53 Aligned_cols=255 Identities=10% Similarity=0.069 Sum_probs=127.2
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcc------ccc-------------------C------CCCCCCeEE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH------AVL-------------------G------ATNSRPDLI 81 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~------~~~-------------------~------~~~~~~~~~ 81 (387)
.|+.+.|.+ +..-|+.|...|.|.||.+...+... ... . .....+...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 488999999 55568888899999999876553221 000 0 001123444
Q ss_pred EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
+....+ +|++++.| |=.+++.|..+|.+.|.|++.+..........
T Consensus 82 ~~~~~g-~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------------- 127 (395)
T PF08596_consen 82 LDAKQG-PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------------- 127 (395)
T ss_dssp E---S--SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------------
T ss_pred eeccCC-cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------------------
Confidence 555544 79999997 55699999999999999998664333211100
Q ss_pred ceeecCCCCCeEEEEEcc----CC---CeeEEEecCCCeEEEEEccC-CCCce----eEEeeccCCCeeEEE-ecCCC--
Q 016547 162 RGIYNGHEDTVEDVTFCP----SS---AQEFCSVGDDSCLILWDARV-GTSPV----IKVEKAHDADLHCVD-WNPLD-- 226 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~----~~---~~~l~~~~~dg~i~iwd~~~-~~~~~----~~~~~~~~~~i~~~~-~~~~~-- 226 (387)
...-......++++.|.. ++ .-.+++|...|.+.+|.+.- ..... ......+.++|..|. ++...
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~ 207 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE 207 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence 001122345677888762 11 14688889999999998752 11111 111224556666555 22110
Q ss_pred -----------------CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc----CCCCeeEEEecCC
Q 016547 227 -----------------DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS----PDKSSVFGSSAED 285 (387)
Q Consensus 227 -----------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~ll~s~~~d 285 (387)
-.-+++...+..++++..-+ .+..++..........+.+- ..+...|++-..+
T Consensus 208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC------CcccceeeccccccceEEEEeecccCCceEEEEEECC
Confidence 11234445577799998876 55544443222233344442 1233467788899
Q ss_pred CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
|.|++|.+...++..... .........+....++++|+.++.+
T Consensus 282 G~i~i~SLP~Lkei~~~~-----------l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 282 GSIRIYSLPSLKEIKSVS-----------LPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp SEEEEEETTT--EEEEEE------------SS---HHHHTT-EE-TTS-EEEE-
T ss_pred CcEEEEECCCchHhhccc-----------CCCccccccccccEECCCCCEEEEe
Confidence 999999999864432110 0001122245566778888866543
No 327
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.31 E-value=4.8e-05 Score=70.06 Aligned_cols=135 Identities=17% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCCCCCCCCCCCCCceeecCCCCC-eEEEEEccCC------CeeEEEecCCCeEEEEEccCCCCceeEE---eeccCCCe
Q 016547 148 DGNDKAADGPSVGPRGIYNGHEDT-VEDVTFCPSS------AQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADL 217 (387)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~i 217 (387)
...+...+...++.+..+..|... |..+ .|+. +...+.|-.+..+..||.|.....++.. ........
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 344555566777777777776643 4444 3431 1335667778899999999754222211 11234456
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547 218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~ 294 (387)
.|++-+. ..+||+|+.+|.||+||--. .+....+.+...+|.+|..+.||+++|||| +..+.+++..
T Consensus 581 s~~aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred eEEEecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 7777664 66899999999999999432 334445667789999999999999998777 6778888864
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.30 E-value=2e-05 Score=69.34 Aligned_cols=165 Identities=10% Similarity=0.150 Sum_probs=105.2
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
|...|.--++.. .+++++.|++-|.+++|+-..++.... ...+-+ +.+..+..+++..++|.|+..|
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~-----------~~~~~~-~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKL-----------KNEGAT-GITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcc-----------cccCcc-ceEEEEEecchhHhhhhhcCCc
Confidence 344443333344 778999999999999999887743221 122222 3566788899999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.++-++......... ....-..|...|++++|++++ ..+.+|.
T Consensus 99 ~V~v~ql~~~~p~~~~~----------------------------------~t~~d~~~~~rVTal~Ws~~~-~k~ysGD 143 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLDY----------------------------------VTPCDKSHKCRVTALEWSKNG-MKLYSGD 143 (726)
T ss_pred eEEeehhhccCCCccee----------------------------------eccccccCCceEEEEEecccc-cEEeecC
Confidence 99999887531110000 001112378899999999999 8899999
Q ss_pred CCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 190 DDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
..|.|.+-.+..... -....+..-.+.|..+.+.. .+|++++.-..+ +++++.
T Consensus 144 ~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~r~~-Lc~tE~ 198 (726)
T KOG3621|consen 144 SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLTRCI-LCQTEA 198 (726)
T ss_pred CCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhhhhh-eeecch
Confidence 999999988876210 01222334456777777653 344444444433 445443
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=9.3e-05 Score=66.83 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=80.1
Q ss_pred EEEEecCCCCcEEEEecC----CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 35 NRIRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
+-+.|+| ...++|+++- .|.|.||- ++++. ....+...| +++++|+|..-.|+.|-.-|.
T Consensus 19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEP----------qr~Vt~P~h----atSLCWHpe~~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEP----------QRDVTYPVH----ATSLCWHPEEFVLAQGWEMGV 82 (1416)
T ss_pred cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCC----------Cccccccee----hhhhccChHHHHHhhccccce
Confidence 4456777 6677777753 57888884 34421 122223333 357999999888999988999
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
+.+|...+... -.....|..+|..+.|+++| ..++++..
T Consensus 83 ~~v~~~~~~e~----------------------------------------htv~~th~a~i~~l~wS~~G-~~l~t~d~ 121 (1416)
T KOG3617|consen 83 SDVQKTNTTET----------------------------------------HTVVETHPAPIQGLDWSHDG-TVLMTLDN 121 (1416)
T ss_pred eEEEecCCcee----------------------------------------eeeccCCCCCceeEEecCCC-CeEEEcCC
Confidence 99998875322 13345689999999999999 88999999
Q ss_pred CCeEEEEEcc
Q 016547 191 DSCLILWDAR 200 (387)
Q Consensus 191 dg~i~iwd~~ 200 (387)
-|.+.+|...
T Consensus 122 ~g~v~lwr~d 131 (1416)
T KOG3617|consen 122 PGSVHLWRYD 131 (1416)
T ss_pred CceeEEEEee
Confidence 9999999876
No 330
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00032 Score=60.11 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=83.0
Q ss_pred CCceeecCCCCCeEEEEEccCCC------eeEEEecCCCeEEEEEccCCCCceeEEeecc----CCCeeEEEecCCCCCe
Q 016547 160 GPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNL 229 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~ 229 (387)
+.+..+..+.. |+-+.+.|+.. ..-+.|-.+..|.-||++-.....+...+.| .....|.+-. ...+
T Consensus 367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~ 443 (644)
T KOG2395|consen 367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGY 443 (644)
T ss_pred eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCce
Confidence 33344444444 55666666531 1234566788999999986543222222222 2334455543 4678
Q ss_pred EEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 230 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+++||.+|.||+||.-. ......+.+...+|..+..+.+|+++|+++ +..+.+-++.-
T Consensus 444 IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred EEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 99999999999999843 445556778889999999999999988666 67788887764
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.24 E-value=0.00031 Score=60.36 Aligned_cols=144 Identities=20% Similarity=0.240 Sum_probs=72.3
Q ss_pred CCCeeEEEecCCCCCeEEEee--CCC---eEEEEEeccCCCCCCCCceEEecc-ccceE---EEEEEc-CCCCeeEEEec
Q 016547 214 DADLHCVDWNPLDDNLILTGS--ADN---SVRMFDRRNLTSNGVGSPINKFEG-HSAAV---LCVQWS-PDKSSVFGSSA 283 (387)
Q Consensus 214 ~~~i~~~~~~~~~~~~l~~~~--~dg---~i~~~d~~~~~~~~~~~~~~~~~~-~~~~i---~~~~~~-~~~~~ll~s~~ 283 (387)
..-+..+.|.+ ++..|+..- .+. .+.++|..+ +.....++. ....| ....|. +++..++....
T Consensus 183 ~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~t------g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 183 DYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDAST------GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECT------TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred ccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCC------CceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence 44577889988 777344333 222 356667665 333222221 12222 244444 66665555555
Q ss_pred CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547 284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
.+|.-+||-+...+.. ...+....-.|+. +.|+++++.+..++..+ .-+.-.+|.++-.
T Consensus 256 ~~G~~hly~~~~~~~~--------------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~-----~p~~r~lY~v~~~- 315 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGK--------------PRQLTSGDWEVTSILGWDEDNNRIYFTANGD-----NPGERHLYRVSLD- 315 (353)
T ss_dssp TTSSEEEEEEETTSSE--------------EEESS-SSS-EEEEEEEECTSSEEEEEESSG-----GTTSBEEEEEETT-
T ss_pred cCCCcEEEEEcccccc--------------eeccccCceeecccceEcCCCCEEEEEecCC-----CCCceEEEEEEeC-
Confidence 8887777666653322 2233444445644 67899988888776543 2234455555421
Q ss_pred ccccchhhhhhhccCceEEEeeecC
Q 016547 363 YRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 363 ~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+..+..+......-..+.|||
T Consensus 316 ---~~~~~~~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 316 ---SGGEPKCLTCEDGDHYSASFSP 337 (353)
T ss_dssp ---ETTEEEESSTTSSTTEEEEE-T
T ss_pred ---CCCCeEeccCCCCCceEEEECC
Confidence 1223333332222226777776
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.23 E-value=0.00046 Score=60.40 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=58.7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
.++.++.+|.+..+|..+++. .-... . .....+.. .+..++.++.+|.+..+|..+ ++.+-......
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~--~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~~ 324 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQI--VWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDLL 324 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCE--EEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEcccccC
Confidence 466677889999999998872 21111 1 11122222 456777788999999999987 65544332111
Q ss_pred -ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 264 -AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 264 -~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
....+.... ++ ++ ..++.+|.+.+.|..++
T Consensus 325 ~~~~~sp~v~-~g-~l-~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 325 HRLLTAPVLY-NG-YL-VVGDSEGYLHWINREDG 355 (394)
T ss_pred CCcccCCEEE-CC-EE-EEEeCCCEEEEEECCCC
Confidence 111222221 33 34 47788999999998875
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00045 Score=60.09 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=105.8
Q ss_pred ceEEEEECCCCCEEEEec---CC-CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 89 AEFALAMCPTEPYVLSGG---KD-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
.+..-.|+|+++.++..+ .. ..+.+++++++..... ..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------------------------------------~~ 235 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------------------------------------LN 235 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------------------------ec
Confidence 466778899888765432 22 3588888876533211 11
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCCCeE--EEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEE
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCL--ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRM 241 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~ 241 (387)
+.++ -..-+|+|||.+++++...||.. .+.|+..+.. ..+....+.-..-.|+| +|+.++-.+. .|.-.|
T Consensus 236 ~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~---~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 236 FNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL---PRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQI 308 (425)
T ss_pred cCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc---eecccCCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence 2222 33468999998888888888874 5556666552 22333333333667999 8877776654 565555
Q ss_pred EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
|-.... +.....+......-..-.|+|+|++++.....+|. |.+.|+..... .....
T Consensus 309 ~~~~~~-----g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~----------------~~~lt 367 (425)
T COG0823 309 YLYDLE-----GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK----------------IRILT 367 (425)
T ss_pred EEECCC-----CCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc----------------EEEcc
Confidence 544332 23333333233333377899999987656544555 55555554321 01112
Q ss_pred CCCCeeEEEEccCCCeEEEEe
Q 016547 320 HRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~ 340 (387)
+......-.|.+++..++.+.
T Consensus 368 ~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 368 STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccccCCCCCcCCCCceEEEec
Confidence 223334556778887776543
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00029 Score=62.77 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=55.9
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
......+.++|||+++++++..+..+.|.|+.+......... .....+.....- .......+|.++|. ...
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~---~~~~~vvaevev-GlGPLHTaFDg~G~-ayt---- 390 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI---KPRDAVVAEPEL-GLGPLHTAFDGRGN-AYT---- 390 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC---CccceEEEeecc-CCCcceEEECCCCC-EEE----
Confidence 455678999999999999999999999999998543211110 000112222222 23445678888876 444
Q ss_pred CCCCCCCCceEEEEecCC
Q 016547 343 DCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~ 360 (387)
|--.|..|-.|++..
T Consensus 391 ---slf~dsqv~kwn~~~ 405 (635)
T PRK02888 391 ---TLFLDSQIVKWNIEA 405 (635)
T ss_pred ---eEeecceeEEEehHH
Confidence 444558999999984
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.14 E-value=0.00047 Score=60.23 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=79.9
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
....+.++|+|++++.++ ||...++...... ...
T Consensus 34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r---------------------------------------------~k~ 67 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR---------------------------------------------NKA 67 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TTEEEEEETTTTE---------------------------------------------EEE
T ss_pred CCeeEEECCCCCEEEEEc-CCEEEEEEccCCc---------------------------------------------ccc
Confidence 356999999999999966 7888888743211 011
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEE-EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
.+....+.|.+.+ .+++-.....|.++ ++.... ...+.. ...+..|- .|.+|+..+.+ .|.+||..+
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---~k~i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~- 135 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---VKSIKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWET- 135 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT-
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---ceEEcC-CcccceEE----cCcEEEEECCC-CEEEEEhhH-
Confidence 2445678899854 57777778899996 332222 112221 12344443 26677766555 899999999
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
++.++++... +|..+.|++++.++ |-.+ +..+.|++...
T Consensus 136 -----~~~i~~i~v~--~vk~V~Ws~~g~~v-al~t-~~~i~il~~~~ 174 (443)
T PF04053_consen 136 -----GKLIRRIDVS--AVKYVIWSDDGELV-ALVT-KDSIYILKYNL 174 (443)
T ss_dssp -------EEEEESS---E-EEEEE-TTSSEE-EEE--S-SEEEEEE-H
T ss_pred -----cceeeEEecC--CCcEEEEECCCCEE-EEEe-CCeEEEEEecc
Confidence 8899998743 48999999999964 4454 44677777654
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.0035 Score=53.93 Aligned_cols=277 Identities=14% Similarity=0.150 Sum_probs=136.6
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--------CCceEEEEECCCCCEE
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAEFALAMCPTEPYV 102 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~~v~~~~~~~~~~~l 102 (387)
...+....|+| +++.+|-.. ++.|.+++..++....-... . ....+.|-. -..-..+-||||+++|
T Consensus 42 ~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~d-g---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l 115 (353)
T PF00930_consen 42 PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTD-G---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL 115 (353)
T ss_dssp ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccc-c---ceeEEcCccceeccccccccccceEECCCCCEE
Confidence 56788999999 788888765 56899998877632211110 0 001111111 0012478999999999
Q ss_pred EEecC-CCeEEEEEcCCCcCccccCCC----cccCCCCCCceeccCCCCCCCCCCCCCCCCCCC--ce---eecCCCCCe
Q 016547 103 LSGGK-DKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RG---IYNGHEDTV 172 (387)
Q Consensus 103 ~s~~~-d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~v 172 (387)
+.... +..|..+.+..........+. .-..++.... ...+.+.+....+. +. .+.....-+
T Consensus 116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np---------~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl 186 (353)
T PF00930_consen 116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP---------RVSLFVVDLASGKTTELDPPNSLNPQDYYL 186 (353)
T ss_dssp EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------------EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC---------ceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence 87654 344555544321111000000 0000010000 00001111111111 01 112335568
Q ss_pred EEEEEccCCCeeEEE-ecCC---CeEEEEEccCCCCceeEEeeccCCCe---eEEEec-CCCCCeEEEeeCCCeEEEEEe
Q 016547 173 EDVTFCPSSAQEFCS-VGDD---SCLILWDARVGTSPVIKVEKAHDADL---HCVDWN-PLDDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~~l~~~~~dg~i~~~d~ 244 (387)
..+.|.+++..+++. ...+ ..+.+.|..++....... ......| ....+. +.+..++.....+|.-+||-+
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 899999998323333 2322 346777887766433332 2222332 245554 535667777778887666655
Q ss_pred ccCCCCCCCCceEEeccccceEEE-EEEcCCCCeeEEEecCCC--eEEEEeCCCC-CceeccCCCCCCCCceeeeeeccC
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG--LLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ll~s~~~d~--~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
... +.....+....-.|.. +.++++++.++.++..++ .-.||.+... +. ....+...
T Consensus 266 ~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--------------~~~~LT~~ 326 (353)
T PF00930_consen 266 DLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--------------EPKCLTCE 326 (353)
T ss_dssp ETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--------------EEEESSTT
T ss_pred ccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--------------CeEeccCC
Confidence 542 3344555545556744 678888887776776532 4444444332 11 12223333
Q ss_pred CCCeeEEEEccCCCeEEEEecC
Q 016547 321 RDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...-..+.|+|++++++..++.
T Consensus 327 ~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp SSTTEEEEE-TTSSEEEEEEES
T ss_pred CCCceEEEECCCCCEEEEEEcC
Confidence 2222699999999999988864
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.04 E-value=0.00024 Score=65.58 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=94.8
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCC-eeEEEecC----CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE----E
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNP----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----K 258 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~~~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~ 258 (387)
......|+-.|+..++ .+..+..+... |..++-.. ..+...+.|-.++.+..||.|... .+.+. .
T Consensus 500 ~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v~~~~k~ 573 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLVDSQSKQ 573 (794)
T ss_pred CCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Cceeeccccc
Confidence 3456778888999888 66666666543 55544321 124456677788899999999632 11221 1
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+ ......+|++-+.+|. +|.|+.+|.||+||--. . .....+.+-..+|..|..+.||+|+++
T Consensus 574 Y-~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g--~-------------~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG--K-------------RAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred c-ccCCCceEEEecCCce--EEEEeCCCcEEeecccc--h-------------hhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 1 1344578888888886 67999999999999322 1 123345667789999999999999999
Q ss_pred EecCCCCCCCCCceEEEEec
Q 016547 339 SVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~ 358 (387)
+|- ..|.+++.
T Consensus 636 Tc~---------tyLlLi~t 646 (794)
T PF08553_consen 636 TCK---------TYLLLIDT 646 (794)
T ss_pred eec---------ceEEEEEE
Confidence 886 56777775
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.0015 Score=56.97 Aligned_cols=186 Identities=15% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCcEEEEEecCCCCcEEEEe---cCC-CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-Ee
Q 016547 31 PGEVNRIRELPQNTKIVATH---TDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SG 105 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~ 105 (387)
...+..=+|+| ++..++-. ... ..+.++++.+++. ..+..+.++.. .-+|+|||++|+ +.
T Consensus 192 ~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~----------~~i~~~~g~~~----~P~fspDG~~l~f~~ 256 (425)
T COG0823 192 GSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKR----------PVILNFNGNNG----APAFSPDGSKLAFSS 256 (425)
T ss_pred CcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCcc----------ceeeccCCccC----CccCCCCCCEEEEEE
Confidence 34555667777 44443332 222 4689999998831 23333455543 679999999876 45
Q ss_pred cCCCeEEEE--EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 106 GKDKSVVLW--SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 106 ~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
..||...+| |+..... ..+..-.+.-..=.|+|+|..
T Consensus 257 ~rdg~~~iy~~dl~~~~~-----------------------------------------~~Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNL-----------------------------------------PRLTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred CCCCCccEEEEcCCCCcc-----------------------------------------eecccCCccccCccCCCCCCE
Confidence 567766655 4443221 111111222224579999988
Q ss_pred eEEEecCCCeEEEE--EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-Ce--EEEEEeccCCCCCCCCceEE
Q 016547 184 EFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NS--VRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 184 ~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~ 258 (387)
++++.+..|.-.|| |.+.... ..+......-..-.|+| ++++++..+.. |. |.+.|+.+ +..++.
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~------~~~~~~ 365 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLAS------GGKIRI 365 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCC------CCcEEE
Confidence 88888888875555 5544442 22222222223778999 99988887753 44 55555554 222333
Q ss_pred eccccceEEEEEEcCCCCeeEEEec
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~ 283 (387)
+. .......-.|.++++.++.+.+
T Consensus 366 lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 366 LT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cc-ccccCCCCCcCCCCceEEEecc
Confidence 32 3333445677788876554443
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.02 E-value=0.00085 Score=59.94 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=73.3
Q ss_pred ccCCCeeEEEecCCCeEEEEEccC----CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCC--
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSN-- 250 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~-- 250 (387)
.++| ++... .++.|.+.|.++ +. .....+ .-......+.++| +++++++++. ++.+.++|+.+....
T Consensus 285 vkdG-K~~~V--~gn~V~VID~~t~~~~~~-~v~~yI-PVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 285 VKAG-KFKTI--GGSKVPVVDGRKAANAGS-ALTRYV-PVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhCC-CEEEE--CCCEEEEEECCccccCCc-ceEEEE-ECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 3455 33333 357899999987 22 133333 4556788999999 8887777665 899999999874210
Q ss_pred ----CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 251 ----GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 251 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.....+.+.+- .......+|.++|. .+.+.--|..|..||+..
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 00011233332 33456788999987 577888899999999987
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.99 E-value=0.0017 Score=52.46 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=101.8
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
++..+++++.++.+..||..++ +.+........ +.... ...+..++.++.++.+..+|..++...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG------------~~~W~~~~~~~--~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG------------KVLWRFDLPGP--ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS------------EEEEEEECSSC--GGSGE-EEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCC------------CEEEEeecccc--cccee-eecccccccccceeeeEecccCCccee
Confidence 3445666688999999999998 34433333111 11111 123455566667889999998876543
Q ss_pred ccc-CCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccC
Q 016547 123 SAT-DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 201 (387)
Q Consensus 123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 201 (387)
... ... .... ...........+ ..++.+..++.|..+|+++
T Consensus 100 W~~~~~~------------------------------------~~~~-~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 100 WSIYLTS------------------------------------SPPA-GVRSSSSPAVDG-DRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp EEEEE-S------------------------------------SCTC-STB--SEEEEET-TEEEEEETCSEEEEEETTT
T ss_pred eeecccc------------------------------------cccc-ccccccCceEec-CEEEEEeccCcEEEEecCC
Confidence 321 100 0000 011111222224 4677777799999999999
Q ss_pred CCCceeEEeeccCCC----------e-eEEEecCCCCCeEEEeeCCCe-EEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547 202 GTSPVIKVEKAHDAD----------L-HCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 269 (387)
Q Consensus 202 ~~~~~~~~~~~~~~~----------i-~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (387)
++ .+-........ + ..+.+. ++ .+..++.++. +.+ |+.+ ++.+-+.. ...+..+
T Consensus 142 G~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~t------g~~~w~~~--~~~~~~~ 207 (238)
T PF13360_consen 142 GK--LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLAT------GEKLWSKP--ISGIYSL 207 (238)
T ss_dssp TE--EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTT------TEEEEEEC--SS-ECEC
T ss_pred Cc--EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCC------CCEEEEec--CCCccCC
Confidence 88 33333332211 1 222222 34 6667777775 555 8888 66544333 2223221
Q ss_pred EEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 270 QWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
....+..++ .++.++.|..||++++
T Consensus 208 -~~~~~~~l~-~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 208 -PSVDGGTLY-VTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EECCCTEEE-EEETTTEEEEEETTTT
T ss_pred -ceeeCCEEE-EEeCCCEEEEEECCCC
Confidence 335666555 4558999999999985
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.96 E-value=0.0015 Score=44.15 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=68.1
Q ss_pred eEEEEEc---cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 172 VEDVTFC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 172 v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
|+++++. .+|.+.|++|+.|..|++|+-. + .+.... -...|++++-.. ...|+.+-.+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e--~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--E--IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--c--EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence 5566554 4556789999999999999744 2 334443 456788888776 47899999999999997653
Q ss_pred CCCCCCceEEeccccceEEEEEEcC---CCCeeEEEecCCCeEEE
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNI 290 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ll~s~~~d~~i~v 290 (387)
.+-.++... .+.++++.. +|..-|++|-.+|.|-+
T Consensus 73 ------RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ------RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ------eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 333333222 255555433 34334568888888753
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.012 Score=51.71 Aligned_cols=227 Identities=11% Similarity=0.118 Sum_probs=111.0
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
...-....+.++| ++++++.+ .||...|+..... .....+. -....|.++++ +|+-...
T Consensus 30 ~~~~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~--------------r~k~~G~----g~~~vw~~~n~-yAv~~~~ 88 (443)
T PF04053_consen 30 SCEIYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAW--------------RNKAFGS----GLSFVWSSRNR-YAVLESS 88 (443)
T ss_dssp E-SS--SEEEE-T-TSSEEEEE-ETTEEEEEETTTT--------------EEEEEEE-----SEEEE-TSSE-EEEE-TT
T ss_pred CCCcCCeeEEECC-CCCEEEEE-cCCEEEEEEccCC--------------cccccCc----eeEEEEecCcc-EEEEECC
Confidence 3555689999999 88888884 5677888874333 1122222 24788988655 5555557
Q ss_pred CeEEEE-EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 109 KSVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 109 ~~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
++|.++ ++++.. . ..+.. ...+..+-. | .+|..
T Consensus 89 ~~I~I~kn~~~~~-~----------------------------------------k~i~~-~~~~~~If~---G-~LL~~ 122 (443)
T PF04053_consen 89 STIKIYKNFKNEV-V----------------------------------------KSIKL-PFSVEKIFG---G-NLLGV 122 (443)
T ss_dssp S-EEEEETTEE-T-T----------------------------------------------SS-EEEEE----S-SSEEE
T ss_pred CeEEEEEcCcccc-c----------------------------------------eEEcC-CcccceEEc---C-cEEEE
Confidence 889996 443211 0 00110 112333322 5 56666
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC-----CCCCCCCceEEeccc
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-----TSNGVGSPINKFEGH 262 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~~~ 262 (387)
.+.+ .|.+||..+++ .+..+.. .+|..+.|++ ++++++..+.+ .+.+++.... ...+....+..+..-
T Consensus 123 ~~~~-~i~~yDw~~~~--~i~~i~v--~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~ 195 (443)
T PF04053_consen 123 KSSD-FICFYDWETGK--LIRRIDV--SAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI 195 (443)
T ss_dssp EETT-EEEEE-TTT----EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE
T ss_pred ECCC-CEEEEEhhHcc--eeeEEec--CCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe
Confidence 5544 89999999887 5555542 2489999999 89999998766 5666665531 000001133333333
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...|.+.+|..+ .++.+.. . .|+- +..+. ...+..-..++.=+...|..+.+.
T Consensus 196 ~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge----------------~~~i~~ld~~~yllgy~~~~~~ly----- 248 (443)
T PF04053_consen 196 SERIKSGCWVED--CFIYTTS-N-HLKY--LVNGE----------------TGIIAHLDKPLYLLGYLPKENRLY----- 248 (443)
T ss_dssp -S--SEEEEETT--EEEEE-T-T-EEEE--EETTE----------------EEEEEE-SS--EEEEEETTTTEEE-----
T ss_pred cceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCC----------------cceEEEcCCceEEEEEEccCCEEE-----
Confidence 567888999877 2333333 3 6665 33321 122222244666677777666665
Q ss_pred CCCCCCCCceEEEEecC
Q 016547 343 DCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~ 359 (387)
....|+.|..+.++
T Consensus 249 ---~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 ---LIDRDGNVISYELD 262 (443)
T ss_dssp ---EE-TT--EEEEE--
T ss_pred ---EEECCCCEEEEEEC
Confidence 34556888888877
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00028 Score=63.91 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=60.5
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 112 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~ 112 (387)
.+++++|+| ..-+|+.|-.-|.+.+|...+. +.-.....|+. +|..+.||++|..|+++..=|.|.
T Consensus 61 hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~------------e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 61 HATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT------------ETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVH 126 (1416)
T ss_pred ehhhhccCh-HHHHHhhccccceeEEEecCCc------------eeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeE
Confidence 456799999 7788999989999999998877 33344556766 789999999999999999999999
Q ss_pred EEEcCC
Q 016547 113 LWSIQD 118 (387)
Q Consensus 113 vwd~~~ 118 (387)
+|....
T Consensus 127 lwr~d~ 132 (1416)
T KOG3617|consen 127 LWRYDV 132 (1416)
T ss_pred EEEeee
Confidence 998873
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.92 E-value=0.0057 Score=51.90 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=72.0
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
..++|++++-. .+ .++++. ++.|.+|++...+.-...........+.++.. .++++++|.....+.++..+..
T Consensus 87 ~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp ESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETT
T ss_pred ecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEcc
Confidence 46789998876 33 434333 47999999988771112222223335555555 4569999999888998866641
Q ss_pred CCCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 248 TSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 248 ~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
...+..+ ......++++.|-+++. .++.+..+|.+.++....
T Consensus 160 -----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 160 -----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred -----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 2222222 22355688999986666 456888999999999874
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00024 Score=62.81 Aligned_cols=123 Identities=14% Similarity=0.200 Sum_probs=86.1
Q ss_pred cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
+...+.--+++. .+.+++.|+.-|.+++|+.... ........+..+.+.....+++.. ++|.|+..|.|.++-
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~-----~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTG-----EMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQ 104 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCch-----hhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeeh
Confidence 334454455566 8899999999999999998752 112222223445566667777765 678999999999999
Q ss_pred CCCCCceeccCCCCCCCCceeeee-eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 293 YEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+... .+... ..+.. -..|...|++++|++++..++ +|...|.|..-.++.
T Consensus 105 l~~~-~p~~~---------~~~t~~d~~~~~rVTal~Ws~~~~k~y--------sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKE-LPRDL---------DYVTPCDKSHKCRVTALEWSKNGMKLY--------SGDSQGKVVLTELDS 155 (726)
T ss_pred hhcc-CCCcc---------eeeccccccCCceEEEEEecccccEEe--------ecCCCceEEEEEech
Confidence 9873 32111 01111 122778999999999999998 888999999998883
No 346
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.88 E-value=0.0039 Score=54.66 Aligned_cols=232 Identities=13% Similarity=0.030 Sum_probs=109.1
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCce-EEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
+..+.+++.+|.+.-+|.++++..-....... ...+.......+ ..+.. ++..++.++.+|.+..+|.++++..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEK---DGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCc---ccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCc
Confidence 34566677788999999988843221110000 000000000000 01111 3556777788999999999988766
Q ss_pred cccCCCcccCCC--CCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe-----EEEEEccCCCeeEEEecCCCeEE
Q 016547 123 SATDPATAKSAG--SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLI 195 (387)
Q Consensus 123 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~ 195 (387)
............ -....+... ...+.+...+..+++.+-.+....... ..-... + ..++.++.+|.+.
T Consensus 144 W~~~~~~~~~ssP~v~~~~v~v~--~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~--~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGEALSRPVVSDGLVLVH--TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-F--GGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCceecCCEEECCEEEEE--CCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-C--CEEEEEcCCCEEE
Confidence 554432211100 001111111 112222223333333332222110000 000111 2 2466677889999
Q ss_pred EEEccCCCCceeEEeeccC--CC---eeEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547 196 LWDARVGTSPVIKVEKAHD--AD---LHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 269 (387)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~--~~---i~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (387)
.+|..+++..-........ .. ...+..+| ..+..+++++.+|.+..+|..+ ++.+-+... . ....+
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~-~-~~~~~ 290 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS------GQIVWKREY-G-SVNDF 290 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC------CCEEEeecC-C-CccCc
Confidence 9998887631111110000 00 01111111 0245667777899999999988 665544331 1 11122
Q ss_pred EEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 270 QWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.. .+..++ .++.+|.+..+|..++
T Consensus 291 ~~--~~~~vy-~~~~~g~l~ald~~tG 314 (394)
T PRK11138 291 AV--DGGRIY-LVDQNDRVYALDTRGG 314 (394)
T ss_pred EE--ECCEEE-EEcCCCeEEEEECCCC
Confidence 22 334454 5667899999999875
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0044 Score=49.61 Aligned_cols=178 Identities=10% Similarity=0.111 Sum_probs=96.2
Q ss_pred eecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-CCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
.+.+-...+.+++|.|+.+.++++....+.|..++.+ ++ .+....-. .+..-.|++.. ++.++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence 4455566799999999876888899999999888864 45 34443322 35577888876 66666665568999999
Q ss_pred EeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC--ceeccCCCCCCCCceeee
Q 016547 243 DRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG--KKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~ 315 (387)
++..............+. .++..+-.++|++.+..+++ +-+..-..+|.+.... ...... .. ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~-----~~-~~~~ 164 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVS-----DD-QDLD 164 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEE-----E--HHHH
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeec-----cc-cccc
Confidence 985422110011112221 24456899999998887764 4555556777776411 100000 00 0000
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
........+.+++++|....+++-.. .+..|..+|..
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~-------es~~l~~~d~~ 201 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSD-------ESRLLLELDRQ 201 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEET-------TTTEEEEE-TT
T ss_pred cccceeccccceEEcCCCCeEEEEEC-------CCCeEEEECCC
Confidence 01123346789999998777776443 33788888855
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.85 E-value=0.0018 Score=43.77 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=50.3
Q ss_pred eeEEEecCCC---CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547 217 LHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 293 (387)
Q Consensus 217 i~~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~ 293 (387)
|++|++...+ .+.|++|+.|..||+|+-. ..+.++.. ...|++++-...++ |+-+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGGR--FAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCCE--EEEEecCCEEEEEeC
Confidence 5666665433 3799999999999999754 46666663 45677887777765 677888999999987
Q ss_pred CC
Q 016547 294 EK 295 (387)
Q Consensus 294 ~~ 295 (387)
..
T Consensus 71 ~~ 72 (111)
T PF14783_consen 71 SQ 72 (111)
T ss_pred cc
Confidence 54
No 349
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.84 E-value=0.006 Score=51.96 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=64.1
Q ss_pred CCeEEEEEccCCCCceeEEeeccC--CCeeEEEe--cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-----
Q 016547 191 DSCLILWDARVGTSPVIKVEKAHD--ADLHCVDW--NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----- 261 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~----- 261 (387)
..++++||+.+.+ .++.+.... ..+..+.| .|....-++.+...++|..|--.....- ..+.+..+..
T Consensus 221 G~~l~vWD~~~r~--~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTRK--LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-AAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTTE--EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-EEEEEEEE--EE--S
T ss_pred cCeEEEEECCCCc--EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-eeeEEEECCCcccCc
Confidence 4789999999887 444443322 23445555 4522233444444555554433211000 0111222211
Q ss_pred ------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc----eeeeeeccCCCCee
Q 016547 262 ------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA----GLFFQHAGHRDKVV 325 (387)
Q Consensus 262 ------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~ 325 (387)
-..-|+.|..|.|.++|.+++-.+|.|+.||+.....+............ .....-..-.+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 13458999999999999999999999999999987554321110000000 00000001122446
Q ss_pred EEEEccCCCeEEEEec
Q 016547 326 DFHWNASDPWTVVSVS 341 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s 341 (387)
-+..|-||++|.++.|
T Consensus 378 MvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEE-TTSSEEEEE--
T ss_pred eEEEccCCeEEEEEee
Confidence 6788999999998876
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00012 Score=63.79 Aligned_cols=94 Identities=14% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCee-EEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
...+.-+.|+|.- .++|.+..+|.|.++.+.-. .+-.++.+...++ +++|.| +|+.||+|-.||+|++.|..+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~- 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK- 93 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence 4568889999998 79999999999999988733 3666665677777 999999 999999999999999999998
Q ss_pred CCCCCCCceEEe-ccccceEEEEEEcC
Q 016547 248 TSNGVGSPINKF-EGHSAAVLCVQWSP 273 (387)
Q Consensus 248 ~~~~~~~~~~~~-~~~~~~i~~~~~~~ 273 (387)
+..+..+ ......|.++.|.+
T Consensus 94 -----~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 -----GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred -----CCceeccccccccchheeeccc
Confidence 5555552 23456788888864
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00016 Score=63.09 Aligned_cols=76 Identities=21% Similarity=0.415 Sum_probs=66.9
Q ss_pred CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE-EEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 214 ~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
...+..+.|+| .-.++|.+..+|.|.+..+. .+.+.++..|+..++ +++|.|||+ ++|.|-.||+|++-|
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHD 90 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEE
Confidence 45678899999 99999999999999998887 678888887777777 999999998 678999999999999
Q ss_pred CCCCCc
Q 016547 293 YEKVGK 298 (387)
Q Consensus 293 ~~~~~~ 298 (387)
+.++..
T Consensus 91 ve~~~~ 96 (665)
T KOG4640|consen 91 VEKGGR 96 (665)
T ss_pred ccCCCc
Confidence 998644
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=0.0043 Score=48.48 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=81.9
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
+...++...+++.|+..+.+.--|..+++ +.....-...|.+-+.- -+++++.|...|.+++.+.++ +.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~---~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs 84 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGN---LIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GS 84 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCc---EEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hh
Confidence 34456666789999999999999999988 33333334455544443 477899999999999999999 87
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
.+..+...+.-=......+++. ++..|+.|+..+..|.++...
T Consensus 85 ~~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 85 QIWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred heeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce
Confidence 7777765443333445567777 567999999999999988644
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.76 E-value=0.012 Score=50.05 Aligned_cols=195 Identities=13% Similarity=0.187 Sum_probs=103.8
Q ss_pred CcEEEEecC---------C-CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547 44 TKIVATHTD---------S-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 113 (387)
Q Consensus 44 ~~~l~t~~~---------d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v 113 (387)
..+++.|+. . |.|.++++...+.. ..+..........++|++++-- ++. |+.+. .+.|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-------~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-------NFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------------EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccccc-------ceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEE
Confidence 578887754 2 88999999884100 0011112122223478888776 444 44444 489999
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 193 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 193 (387)
|++...... .....+. ....+.++... + ++++.|.....
T Consensus 112 ~~l~~~~~l-------------------------------------~~~~~~~-~~~~i~sl~~~--~-~~I~vgD~~~s 150 (321)
T PF03178_consen 112 YDLDNSKTL-------------------------------------LKKAFYD-SPFYITSLSVF--K-NYILVGDAMKS 150 (321)
T ss_dssp EEEETTSSE-------------------------------------EEEEEE--BSSSEEEEEEE--T-TEEEEEESSSS
T ss_pred EEccCcccc-------------------------------------hhhheec-ceEEEEEEecc--c-cEEEEEEcccC
Confidence 999864300 0111111 22356666665 3 47888888788
Q ss_pred EEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC-CC----ceEEeccccceEE
Q 016547 194 LILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GS----PINKFEGHSAAVL 267 (387)
Q Consensus 194 i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~----~~~~~~~~~~~i~ 267 (387)
+.++..+........ ........++++.+-+ +++.++++..+|.+.++.......... +. ....+. ....|+
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~ 228 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVN 228 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccc
Confidence 887755543211111 1222355688888886 557999999999999998874222111 22 222232 345677
Q ss_pred EE---EEcC--CCCe-----eEEEecCCCeEEEE
Q 016547 268 CV---QWSP--DKSS-----VFGSSAEDGLLNIW 291 (387)
Q Consensus 268 ~~---~~~~--~~~~-----ll~s~~~d~~i~vw 291 (387)
++ .+.| .+.. .++.++.+|.|-+.
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 77 5555 2221 24466678888733
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.012 Score=46.07 Aligned_cols=68 Identities=7% Similarity=-0.106 Sum_probs=48.9
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 123 (387)
+++++.|...|.+++.+..++ .....+..-..-. ..-...+++..+..++.|+.....|..+..+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tG------------s~~w~f~~~~~vk-~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTG------------SQIWNFVILETVK-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecch------------hheeeeeehhhhc-cceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 567889999999999999998 3333333332211 133456789999999999999999998775544
Q ss_pred c
Q 016547 124 A 124 (387)
Q Consensus 124 ~ 124 (387)
.
T Consensus 130 k 130 (354)
T KOG4649|consen 130 K 130 (354)
T ss_pred e
Confidence 4
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.025 Score=49.54 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+....+....++.+.+.+... .+. +. ..+++..++.||++++ +|.-..+|.+.+.+..-
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~------~~~---i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENS------FKQ---ID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDF 247 (410)
T ss_pred CcceEEEEecCCEEEEEEccc------ccc---cc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcc
Confidence 444445555555665444332 111 22 2467999999999996 57777889998887654
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00011 Score=39.45 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=32.5
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 115 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 115 (387)
.+...+..|.. .|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777776 799999999999999999999999996
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.71 E-value=0.0087 Score=49.53 Aligned_cols=271 Identities=12% Similarity=0.123 Sum_probs=131.5
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------CCCeEEEEEcCCCcCcc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS 123 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~ 123 (387)
+++.|.|.+++ +.+-.+..-- .-.+..+|+++.+++++ ..-.|.+||..+.....
T Consensus 17 ~rv~viD~d~~------------k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 17 SRVYVIDADSG------------KLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp EEEEEEETTTT------------EEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred ceEEEEECCCC------------cEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 47899998887 4443333322 23567899999888643 34469999998763322
Q ss_pred ccCCCc---cc--------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547 124 ATDPAT---AK--------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 192 (387)
Q Consensus 124 ~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 192 (387)
...... .. .....+......+-.-...+.+.+....+.+..+.. . -|.-..|.++.-|.+-|.||
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--P--GC~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--P--GCWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--T--SEEEEEEEETTEEEEEETTS
T ss_pred eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--C--CEEEEEecCCCceEEEecCC
Confidence 211111 00 111111111111111122222333333322222211 0 12223344445588888999
Q ss_pred eEEEEEccCCCCceeEE---eeccCCCe-eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-------
Q 016547 193 CLILWDARVGTSPVIKV---EKAHDADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG------- 261 (387)
Q Consensus 193 ~i~iwd~~~~~~~~~~~---~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~------- 261 (387)
.+.-..+...-+...+. +.....++ ..-++.. .+..++--+.+|.|+-.|+.... .+....+..
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~----~~~~~~~~~~t~~e~~ 232 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDS----AKFGKPWSLLTDAEKA 232 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSS----EEEEEEEESS-HHHHH
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCc----ccccCcccccCccccc
Confidence 99999888543222111 11111222 2233444 45556657889999999888521 111222211
Q ss_pred ---ccceEEEEEEcCCCCeeEEEec-------CCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 262 ---HSAAVLCVQWSPDKSSVFGSSA-------EDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 262 ---~~~~i~~~~~~~~~~~ll~s~~-------~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
..+...-+++++....|++.-. .|+ .|.++|+.+. +.+..+.- ..++.++..
T Consensus 233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------------krv~Ri~l-~~~~~Si~V 296 (342)
T PF06433_consen 233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------------KRVARIPL-EHPIDSIAV 296 (342)
T ss_dssp TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------------EEEEEEEE-EEEESEEEE
T ss_pred cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------------eEEEEEeC-CCccceEEE
Confidence 0122334667665554443221 122 2666666653 23333332 236779999
Q ss_pred ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547 330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
+.+..-++.+.+ ..++.|.+||.. +++.++++.+-
T Consensus 297 sqd~~P~L~~~~------~~~~~l~v~D~~------tGk~~~~~~~l 331 (342)
T PF06433_consen 297 SQDDKPLLYALS------AGDGTLDVYDAA------TGKLVRSIEQL 331 (342)
T ss_dssp ESSSS-EEEEEE------TTTTEEEEEETT------T--EEEEE---
T ss_pred ccCCCcEEEEEc------CCCCeEEEEeCc------CCcEEeehhcc
Confidence 988775554322 234899999999 78888877643
No 358
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.017 Score=46.39 Aligned_cols=172 Identities=13% Similarity=0.232 Sum_probs=105.5
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE--EeccCCCceEEEEECCCCCEEEEe
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.|-.+.|.++.|+|++..++++ ...+.-.||=...+ ..+.. +.+-.+ -..|.+..+|++.++-
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~G------------dlirtiPL~g~~D--pE~Ieyig~n~fvi~d 146 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEG------------DLIRTIPLTGFSD--PETIEYIGGNQFVIVD 146 (316)
T ss_pred ccccccccceeeCCCcceEEEe-cCCCceEEEEecCC------------ceEEEecccccCC--hhHeEEecCCEEEEEe
Confidence 4556669999999955544444 45455555544444 23322 344444 2478999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
-+++.+.++.+............ .-++..........-.++|.|.+ ..|
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d~~~-~~l 195 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWDPVD-HRL 195 (316)
T ss_pred hhcceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecCCCC-ceE
Confidence 89999999988754322211110 00111112225567889999998 566
Q ss_pred EEecCCCeEEEEEccCCCCcee-EEeecc-------CCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 186 CSVGDDSCLILWDARVGTSPVI-KVEKAH-------DADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
+.+-+-.-+.||.......... .....+ -..+.++.|++..+.+|+.+..++.+.-.|..
T Consensus 196 ~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 196 FVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 6666666677776654331111 111111 23467888988678888888888888888877
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.015 Score=48.45 Aligned_cols=181 Identities=11% Similarity=0.124 Sum_probs=97.2
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-ceeEEee-c-cCCCeeEEEecCCCCCeEEEeeC-----------CC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEK-A-HDADLHCVDWNPLDDNLILTGSA-----------DN 237 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~-----------dg 237 (387)
+.++.....+ ..|+++.. .+.+++.+++.. ....... + .....+.+...| ++.+.++... -|
T Consensus 68 ~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCC-CeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcc
Confidence 3444443333 34555433 356666655442 1111111 1 123456777888 7766655443 12
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
.++.+|. . +..+..+..+-..-+.|+||||++.++++=+..+.|.-|++....-.. .........
T Consensus 144 ~lyr~~p-~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--------~~~~~~~~~ 208 (307)
T COG3386 144 SLYRVDP-D------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--------GGRRGFVDF 208 (307)
T ss_pred eEEEEcC-C------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--------CCcceEEEc
Confidence 2333332 2 445555555455668999999999888888888999999887411110 000112222
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
....+..-.++...+|.+.++ .....+.|.+|+.. ++++.++.-....+++++|
T Consensus 209 ~~~~G~PDG~~vDadG~lw~~-------a~~~g~~v~~~~pd-------G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 209 DEEPGLPDGMAVDADGNLWVA-------AVWGGGRVVRFNPD-------GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred cCCCCCCCceEEeCCCCEEEe-------cccCCceEEEECCC-------CcEEEEEECCCCCCccceE
Confidence 334556667777777776642 11222488888877 5566655544455555554
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.68 E-value=0.00016 Score=38.81 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=29.3
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEe
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWD 60 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd 60 (387)
...|.+.|.++.|.+ .+.++++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 346899999999999 668999999999999996
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.66 E-value=0.036 Score=49.05 Aligned_cols=246 Identities=13% Similarity=0.062 Sum_probs=126.9
Q ss_pred EEEEEecCCCCcEEEEe-cCCC----cEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEecC
Q 016547 34 VNRIRELPQNTKIVATH-TDSP----DVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
+....++| +++++|-+ +..| .+++.|++++ +.+. .+.... -..+.|.++++.|+....
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg------------~~l~d~i~~~~---~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETG------------KFLPDGIENPK---FSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTT------------EEEEEEEEEEE---SEEEEECTTSSEEEEEEC
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCC------------cCcCCcccccc---cceEEEeCCCCEEEEEEe
Confidence 34567788 77777654 3444 5999999998 2222 222221 124999999887765442
Q ss_pred C-----------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC--eEE
Q 016547 108 D-----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT--VED 174 (387)
Q Consensus 108 d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~ 174 (387)
+ ..|..|.+.+.... ....+...... ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~--------------------------------------d~lvfe~~~~~~~~~~ 231 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSE--------------------------------------DELVFEEPDEPFWFVS 231 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG---------------------------------------EEEEC-TTCTTSEEE
T ss_pred CcccccccCCCCcEEEEEECCCChHh--------------------------------------CeeEEeecCCCcEEEE
Confidence 2 23777777654221 01233332222 567
Q ss_pred EEEccCCCeeEEEecCC---CeEEEEEccCC---CCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---CCeEEEEEec
Q 016547 175 VTFCPSSAQEFCSVGDD---SCLILWDARVG---TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRR 245 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~~~d~~ 245 (387)
+..++++..+++..... ..+.+.|+... .. ....+......+....-+. ++.+++.... .+.|.-.++.
T Consensus 232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETT
T ss_pred EEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccc
Confidence 88899985444443332 45778888764 21 2333333333343333232 3444444332 3566666766
Q ss_pred cCCCCCCCCceEEeccccc--eEEEEEEcCCCCeeEEEecCCCe--EEEEeCC-CCCceeccCCCCCCCCceeeeeeccC
Q 016547 246 NLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE-KVGKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
.... ......+-.+.. .+..+.. .+.+|++....++. |+++++. .. .. ......-
T Consensus 310 ~~~~---~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~-~~--------------~~~~~p~ 369 (414)
T PF02897_consen 310 DPSP---AEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK-ES--------------REIPLPE 369 (414)
T ss_dssp STSG---GGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE-EE--------------EEEESSS
T ss_pred cccc---ccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc-EE--------------eeecCCc
Confidence 6321 112224444544 4555554 45557767666654 7788888 32 11 1111112
Q ss_pred CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+.|..+...++.+.+.++.+ +=-.-+++..||+.
T Consensus 370 ~g~v~~~~~~~~~~~~~~~~s----s~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 370 AGSVSGVSGDFDSDELRFSYS----SFTTPPTVYRYDLA 404 (414)
T ss_dssp SSEEEEEES-TT-SEEEEEEE----ETTEEEEEEEEETT
T ss_pred ceEEeccCCCCCCCEEEEEEe----CCCCCCEEEEEECC
Confidence 344667777777777777665 23344788888888
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=8.2e-05 Score=56.62 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=66.6
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
..+++|+.+|.|.+|....... ...........|-++--.-.++.+..++..||.|+.|++.- .+.+-....|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence 5799999999999998763221 11111122233333322222556899999999999999886 5666666666
Q ss_pred c-ceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCC
Q 016547 263 S-AAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKV 296 (387)
Q Consensus 263 ~-~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~ 296 (387)
. .++..+..+..++. ++.. |.|..++.|++...
T Consensus 144 ~~~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEF-LKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cCCCcceeEEecCCce-EEeeccccchhhhhcchhhh
Confidence 6 44555555555553 4555 66777778877653
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.035 Score=48.66 Aligned_cols=86 Identities=7% Similarity=0.128 Sum_probs=54.5
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
++.+. ...+....++.+.+.+-...+ .. ...+++..|++|| +++++|.-..+|.+.+.+..- .+.+
T Consensus 186 l~~~~-~~~i~~~~g~~i~~i~~~~~~-----~i-~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf------~~~~ 251 (410)
T PF04841_consen 186 LSSDR-VVEILLANGETIYIIDENSFK-----QI-DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF------SEKL 251 (410)
T ss_pred eecCc-ceEEEEecCCEEEEEEccccc-----cc-cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc------ccee
Confidence 44444 344444555666655433222 11 2346899999999 999999999999998887654 4555
Q ss_pred EEeccc-cceEEEEEEcCCCC
Q 016547 257 NKFEGH-SAAVLCVQWSPDKS 276 (387)
Q Consensus 257 ~~~~~~-~~~i~~~~~~~~~~ 276 (387)
.++... ......+.|+.+..
T Consensus 252 ~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 252 CEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEeecCcCCCCcEEEEECCCc
Confidence 555433 34556777776654
No 364
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.60 E-value=0.027 Score=51.58 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=80.3
Q ss_pred eeEEEecCCCe-----EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC------eEEEEEeccCCCCC
Q 016547 183 QEFCSVGDDSC-----LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRNLTSNG 251 (387)
Q Consensus 183 ~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~ 251 (387)
.+.++|+.||. +-.||..+.++........ ..........++.+.++|+.++ .+..||..+..
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--- 455 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--- 455 (571)
T ss_pred EEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence 78899998865 7788888877543332222 2222222222788888888665 46677777633
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe-----EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
+..+........... ++.- ++ .|++.|+.|+. |..||..... +..+....... ..
T Consensus 456 -W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~-------------W~~v~~m~~~r---s~ 515 (571)
T KOG4441|consen 456 -WTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ-------------WTMVAPMTSPR---SA 515 (571)
T ss_pred -eeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc-------------eeEcccCcccc---cc
Confidence 333333332222222 2222 23 37888887763 6667766531 11121111122 22
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
+.....+..+.+.++.| -...-++|..||....
T Consensus 516 ~g~~~~~~~ly~vGG~~--~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVLGGKLYAVGGFD--GNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEECCEEEEEeccc--CccccceeEEcCCCCC
Confidence 22222355667766555 4444468888877643
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.043 Score=47.72 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=127.0
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC---CCeE
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSV 111 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i 111 (387)
..++.++...+..++...++.|.+.|..+. +......--.. -..++++++++.+..+.. ++++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~------------~~~~~~~vG~~--P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN------------TVLGSIPVGLG--PVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc------------ceeeEeeeccC--CceEEECCCCCEEEEEecccCCceE
Confidence 466677755557777777789999996666 23332222222 258999999988776655 5777
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
.+.|..+...... ...-..+ ..+++.|++...+++-..+
T Consensus 143 svid~~t~~~~~~----------------------------------------~~vG~~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 143 SVIDAATNKVTAT----------------------------------------IPVGNTP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred EEEeCCCCeEEEE----------------------------------------EecCCCc-ceEEECCCCCeEEEEecCC
Confidence 7777765433221 1111133 7899999995566666689
Q ss_pred CeEEEEEccCCCCceeEE----eeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 192 SCLILWDARVGTSPVIKV----EKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+.|.+.|..... .... ...-......+.++| ++.++.+.... +.+...|..+ +.....-..-..
T Consensus 182 ~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~~~ 252 (381)
T COG3391 182 NTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPVGS 252 (381)
T ss_pred CeEEEEeCCCcc--eeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEecccccc
Confidence 999999976654 2210 112233456788999 78766555443 5888888876 444333111112
Q ss_pred -eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 265 -AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 265 -~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
....+..+|+|.++.+.-+..+.+.+-|....
T Consensus 253 ~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 45678999999987766566688998888774
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.033 Score=46.15 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
.++.|+.|+.+| +.+++..... ......... .|..+...++-+.|++-+ |+.+.++++......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~-----------~~~~i~~~~---~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS-----------KPTRILKLS---SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc-----------cceeEeecc---eEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 567888999998 9999983321 222222221 388999988877777665 599999999764332
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE--EccCCCeeEEEecCCCeEEEEEcc
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT--FCPSSAQEFCSVGDDSCLILWDAR 200 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~ 200 (387)
....+.. ................+...+ -...+...++ ......|.+|...
T Consensus 70 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~ 122 (275)
T PF00780_consen 70 STSAPLA--------------------------FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWN 122 (275)
T ss_pred ccccccc--------------------------ccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEE
Confidence 2110000 000000000111223344444 1223323344 4445588888877
Q ss_pred CCCC---ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 201 VGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 201 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
.... ...+.+ .-...+..++|. ++.++.|..++ ..+.|+.+
T Consensus 123 ~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v~~~~~-f~~idl~~ 166 (275)
T PF00780_consen 123 DPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICVGTSKG-FYLIDLNT 166 (275)
T ss_pred CCcccccceeEEE-EcCCCcEEEEEe---CCEEEEEeCCc-eEEEecCC
Confidence 6421 123333 345788999997 46777776555 66788886
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.051 Score=47.27 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=123.6
Q ss_pred EEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 91 FALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 91 ~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
..++.++.+..+. ....++.|.+.|......... ...+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---------------------------------------~~vG~- 116 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---------------------------------------IPVGL- 116 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---------------------------------------eeecc-
Confidence 4778888888554 444568899998554322110 01111
Q ss_pred CCeEEEEEccCCCeeEEEec--CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEecc
Q 016547 170 DTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN 246 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~ 246 (387)
....+++.+++....++-. .++.+.+.|..+.+ ..........+ ..++++| ++..+.+.. .++.|.++|...
T Consensus 117 -~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 117 -GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred -CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCC
Confidence 4567899999866666655 47888888888776 34443333334 8999999 888665555 789999999775
Q ss_pred CCCCCCCCceE-----EeccccceEEEEEEcCCCCeeEEEecCC--CeEEEEeCCCCCceeccCCCCCCCCceeeee--e
Q 016547 247 LTSNGVGSPIN-----KFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--H 317 (387)
Q Consensus 247 ~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~ 317 (387)
..... ... -......+.++|++.++.+....+ +.+...|...... ... .
T Consensus 192 ------~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v---------------~~~~~~ 249 (381)
T COG3391 192 ------NSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV---------------TATDLP 249 (381)
T ss_pred ------cceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---------------EEeccc
Confidence 22221 122 223346789999999777666555 5888888877421 111 1
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+.. ....+..+|+|.++.++-+. .+.+.+-|..
T Consensus 250 ~~~~-~~~~v~~~p~g~~~yv~~~~-------~~~V~vid~~ 283 (381)
T COG3391 250 VGSG-APRGVAVDPAGKAAYVANSQ-------GGTVSVIDGA 283 (381)
T ss_pred cccC-CCCceeECCCCCEEEEEecC-------CCeEEEEeCC
Confidence 1112 45678899999988865443 3788888877
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.50 E-value=0.044 Score=49.51 Aligned_cols=75 Identities=9% Similarity=-0.091 Sum_probs=40.8
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCce-EEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 123 (387)
..+..++.++.|.-.|..+++..-........ .......+ ..+... ++..++.++.++.|.-+|.++++...
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEee
Confidence 34566677899999999888433221100000 00000000 011111 22577778889999999998886654
Q ss_pred ccC
Q 016547 124 ATD 126 (387)
Q Consensus 124 ~~~ 126 (387)
...
T Consensus 135 ~~~ 137 (488)
T cd00216 135 KFG 137 (488)
T ss_pred eec
Confidence 443
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.061 Score=44.84 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=123.4
Q ss_pred EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcC
Q 016547 38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ 117 (387)
Q Consensus 38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 117 (387)
.|.+..+.++.+--..+.|.-|+..+++ ...+..... +.++..-..+..|+++. .-+.+++.+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-------------~~~~~~p~~--~~~~~~~d~~g~Lv~~~--~g~~~~~~~ 93 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK-------------KRVFPSPGG--FSSGALIDAGGRLIACE--HGVRLLDPD 93 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc-------------eEEEECCCC--cccceeecCCCeEEEEc--cccEEEecc
Confidence 4667555577777778889999887662 233333332 34554444555666654 345566654
Q ss_pred CCcC-ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC------
Q 016547 118 DHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD------ 190 (387)
Q Consensus 118 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------ 190 (387)
++.. ...... .. .......+.+...|+| .+.++...
T Consensus 94 ~~~~~t~~~~~-----------------------------~~-------~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~ 136 (307)
T COG3386 94 TGGKITLLAEP-----------------------------ED-------GLPLNRPNDGVVDPDG-RIWFGDMGYFDLGK 136 (307)
T ss_pred CCceeEEeccc-----------------------------cC-------CCCcCCCCceeEcCCC-CEEEeCCCccccCc
Confidence 3322 100000 00 0011344566777777 43333222
Q ss_pred -----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCc-eEEecccc
Q 016547 191 -----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP-INKFEGHS 263 (387)
Q Consensus 191 -----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~-~~~~~~~~ 263 (387)
-|.++.+|. .+. ..+....+-...+.|+|+| +++.|..+.. .+.|.-|++.........+. ...+....
T Consensus 137 ~~~~~~G~lyr~~p-~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~ 212 (307)
T COG3386 137 SEERPTGSLYRVDP-DGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEP 212 (307)
T ss_pred cccCCcceEEEEcC-CCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCC
Confidence 133444443 233 3444445556678999999 8877776655 47888887763111111121 22222334
Q ss_pred ceEEEEEEcCCCCeeEEEecCCC-eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCCCeEEEEec
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVS 341 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~s~s 341 (387)
+..-.++...+|.. .+++..+| .|.+|+.. + .++....-....+++++|- |+.+.|++++.
T Consensus 213 G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G---------------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 213 GLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-G---------------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCceEEeCCCCE-EEecccCCceEEEECCC-C---------------cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 55667777788874 43343343 89999988 3 2233334444677888884 45566766554
No 370
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.012 Score=55.69 Aligned_cols=159 Identities=10% Similarity=0.093 Sum_probs=102.2
Q ss_pred eEEEeccCCCceEEEEECCCCCEEEE--ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 79 DLILTGHQDNAEFALAMCPTEPYVLS--GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 79 ~~~~~~h~~~~v~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
...+..|...++..+...+|++..+. .+.+-.|..+|+++-......
T Consensus 92 ~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~------------------------------- 140 (1405)
T KOG3630|consen 92 NLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE------------------------------- 140 (1405)
T ss_pred ccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-------------------------------
Confidence 34566666666777777888776443 344457889999764221110
Q ss_pred CCCCCc---eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547 157 PSVGPR---GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 233 (387)
Q Consensus 157 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (387)
+..++ ...........++.|.|.-....+.+..|+.|++..+......+ .. .......++++|+| .|..++.|
T Consensus 141 -~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v-~s-~p~t~~~Tav~WSp-rGKQl~iG 216 (1405)
T KOG3630|consen 141 -TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV-TS-FPVTNSQTAVLWSP-RGKQLFIG 216 (1405)
T ss_pred -hccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhh-cc-cCcccceeeEEecc-ccceeeEe
Confidence 00010 11112234567889998876678888899999998776544222 22 23456789999999 99999999
Q ss_pred eCCCeEEEEEeccCCCCCCCCceEEecc----ccceEEEEEEcCCCCeeE
Q 016547 234 SADNSVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVF 279 (387)
Q Consensus 234 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~ll 279 (387)
...|++.-|-.. .+...++.. ....|.+|.|-....+++
T Consensus 217 ~nnGt~vQy~P~-------leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 217 RNNGTEVQYEPS-------LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred cCCCeEEEeecc-------cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 999999888655 232233221 136799999988777654
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.30 E-value=0.0011 Score=37.36 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=29.0
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEecc
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE 62 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~ 62 (387)
....|.+++|+| ..++||.|+.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 456799999999 88999999999999999984
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0016 Score=60.79 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.+..++.|+..|.+-..|++.. -.+...-..-.++|++++|+.+|+. ++.|-.+|.|.+||+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~~-l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGSL-LLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCce-eccccCCCcEEEEEccCC
Confidence 5678999999999999998852 1222333334689999999999995 568888999999999985
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.28 E-value=0.092 Score=44.60 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=33.4
Q ss_pred ecCCCCcEEEEecCCCc--EEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEc
Q 016547 39 ELPQNTKIVATHTDSPD--VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 116 (387)
Q Consensus 39 ~~~~~~~~l~t~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 116 (387)
|.++..++|..+..||. +.+-|+.++ + +..|....+.......++++++.++-......|+--|+
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~------------~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATG------------E-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-------------E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccC------------E-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 34433355555555654 555677766 2 23333332212235667788888766555568888888
Q ss_pred CCCc
Q 016547 117 QDHI 120 (387)
Q Consensus 117 ~~~~ 120 (387)
++.+
T Consensus 110 ~T~e 113 (386)
T PF14583_consen 110 DTLE 113 (386)
T ss_dssp TT--
T ss_pred CcCc
Confidence 7653
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.015 Score=50.45 Aligned_cols=143 Identities=18% Similarity=0.203 Sum_probs=95.8
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC-------CeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-------NLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
-+|.++.....++-.|++.++ .+.....+.. |+-+.+.| +. ..-+.|=.|..|.-||.|-.. ...
T Consensus 347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~k 418 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNK 418 (644)
T ss_pred eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC----cce
Confidence 455566666778888998888 5666655554 66666666 32 223456678889999999532 112
Q ss_pred eEEecccc----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 256 INKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 256 ~~~~~~~~----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
+..-++|+ ....|++-..+|. +|.|+.+|.|++||--.. .....+.+-..+|..+..+.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG~--IvvgS~~GdIRLYdri~~---------------~AKTAlPgLG~~I~hVdvta 481 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESGY--IVVGSLKGDIRLYDRIGR---------------RAKTALPGLGDAIKHVDVTA 481 (644)
T ss_pred eeeeeccccccccccceeeecCCce--EEEeecCCcEEeehhhhh---------------hhhhcccccCCceeeEEeec
Confidence 33333332 3456777777774 579999999999997332 12334567788999999999
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+|.+++++|- ..+.+-++.
T Consensus 482 dGKwil~Tc~---------tyLlLi~t~ 500 (644)
T KOG2395|consen 482 DGKWILATCK---------TYLLLIDTL 500 (644)
T ss_pred cCcEEEEecc---------cEEEEEEEe
Confidence 9999998774 566666654
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.00083 Score=51.33 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=78.9
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
.+..-+.+|.|.-++++..+..+ +....+... .-.+..+..+++|+.+|.|.+|..... +........-.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC-RSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhh-hhhhhhhcc----eeecccCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence 45556778888888887655221 111112222 111225678999999999999987732 22211111122
Q ss_pred ceEEEEEEcCCCCe--eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC-CCeeEEEEccCCCeEEEEe
Q 016547 264 AAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 264 ~~i~~~~~~~~~~~--ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~s~ 340 (387)
..|.++. |.++. +..+++.||.|+.|++.... .+.....|. .++..+..+..++.+..+
T Consensus 102 e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k---------------~~g~~g~h~~~~~e~~ivv~sd~~i~~a- 163 (238)
T KOG2444|consen 102 ESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNK---------------VLGYVGQHNFESGEELIVVGSDEFLKIA- 163 (238)
T ss_pred ccceecc--ccccccceeEEeccCCceeeeccccCc---------------eeeeeccccCCCcceeEEecCCceEEee-
Confidence 2333332 33322 67789999999999988642 233333444 344444444444444321
Q ss_pred cCCCCCCCCCceEEEEecCC
Q 016547 341 SDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~ 360 (387)
--|.|..++.|++..
T Consensus 164 -----~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 164 -----DTSHDRVLKKWNVEK 178 (238)
T ss_pred -----ccccchhhhhcchhh
Confidence 125557788888763
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.21 E-value=0.06 Score=49.44 Aligned_cols=141 Identities=15% Similarity=0.119 Sum_probs=75.7
Q ss_pred CCeEEEEEccCCCeeEEEec-----CCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-----
Q 016547 170 DTVEDVTFCPSSAQEFCSVG-----DDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----- 237 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----- 237 (387)
..+...+++|++....++.. .|. .|.+++..... .....+ ...+.-.|+| ++..+++.....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence 45778899999955444441 244 45555542222 111222 2478889999 888777765432
Q ss_pred -------eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC--CCceeccCCCCCC
Q 016547 238 -------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTN 308 (387)
Q Consensus 238 -------~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~ 308 (387)
.+.+.++.. +.... .....|..+.|||||.++++.. ++.|.+=-+.. .+.. ..
T Consensus 424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~-~l------ 485 (591)
T PRK13616 424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQY-AL------ 485 (591)
T ss_pred eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCce-ee------
Confidence 222223322 21111 2346799999999999876554 47777733222 1111 00
Q ss_pred CCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547 309 YPAGLFFQHAGHRDKVVDFHWNASDPWT 336 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (387)
........+-...+.++.|..++..+
T Consensus 486 --~~~~~l~~~l~~~~~~l~W~~~~~L~ 511 (591)
T PRK13616 486 --TNPREVGPGLGDTAVSLDWRTGDSLV 511 (591)
T ss_pred --cccEEeecccCCccccceEecCCEEE
Confidence 00111112233346889999988744
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.13 E-value=0.17 Score=44.86 Aligned_cols=208 Identities=12% Similarity=0.087 Sum_probs=107.5
Q ss_pred eEEEEECCCCCEEEEe-cC----CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 90 EFALAMCPTEPYVLSG-GK----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~-~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
+....++|+|+++|.+ +. ...+++.|++++..... .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d---------------------------------------~ 166 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD---------------------------------------G 166 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE---------------------------------------E
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC---------------------------------------c
Confidence 4468899999998743 22 24699999987632210 1
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCC----------CeEEEEEccCCCCceeEEeeccCCC--eeEEEecCCCCCeEEE
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKAHDAD--LHCVDWNPLDDNLILT 232 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~ 232 (387)
+.. .....+.|.+++..++.+...+ ..|+.|.+.+....-...+...... ...+..++ ++++++.
T Consensus 167 i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i 243 (414)
T PF02897_consen 167 IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFI 243 (414)
T ss_dssp EEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEE
T ss_pred ccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEE
Confidence 111 1122399999985555554332 3478888877654323334333332 56788888 8888776
Q ss_pred eeCC----CeEEEEEeccCCCCCCCCceEEeccccceE-EEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCC
Q 016547 233 GSAD----NSVRMFDRRNLTSNGVGSPINKFEGHSAAV-LCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPR 305 (387)
Q Consensus 233 ~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~ 305 (387)
.+.. ..+.+.|+..... . ......+......+ ..+... .+.+++.+- ..++.|.-.++......
T Consensus 244 ~~~~~~~~s~v~~~d~~~~~~-~-~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------ 314 (414)
T PF02897_consen 244 SSSSGTSESEVYLLDLDDGGS-P-DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------ 314 (414)
T ss_dssp EEESSSSEEEEEEEECCCTTT-S-S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------
T ss_pred EEEccccCCeEEEEeccccCC-C-cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------
Confidence 5443 3477777775200 0 12233333233333 333333 444333332 23466777777764321
Q ss_pred CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 306 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.....+..+...+.-..+...+.+|++....+ ....|+++++.
T Consensus 315 ------~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-----~~~~l~v~~~~ 357 (414)
T PF02897_consen 315 ------EWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-----GSSRLRVYDLD 357 (414)
T ss_dssp ------GEEEEEE--SSSEEEEEEEEETTEEEEEEEET-----TEEEEEEEETT
T ss_pred ------cceeEEcCCCCceeEEEEEEECCEEEEEEEEC-----CccEEEEEECC
Confidence 11113344554333333444577888877654 23578888888
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.12 E-value=0.15 Score=43.95 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=79.4
Q ss_pred EEEEEccCCCeeEEEec------CCCeEEEEEccCCCCceeEEeec---cCCCeeEEEecCCCCCeEEEee---------
Q 016547 173 EDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKA---HDADLHCVDWNPLDDNLILTGS--------- 234 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~--------- 234 (387)
..+...|+| .+++++- .-|.+.+.|-++.+ ....... ....-+.+-|.| ..+.+++..
T Consensus 133 HT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~ 208 (461)
T PF05694_consen 133 HTVHCLPDG-RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEK 208 (461)
T ss_dssp EEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT
T ss_pred ceeeecCCc-cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhccc
Confidence 344556777 6666642 23557777777655 2333222 122345677888 777777764
Q ss_pred -----------CCCeEEEEEeccCCCCCCCCceEEecccc--ceEEEEEEc--CCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547 235 -----------ADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKK 299 (387)
Q Consensus 235 -----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~ll~s~~~d~~i~vwd~~~~~~~ 299 (387)
...++.+||+.+ .+.++++.--+ .....+.|. |+..+=|+.+.-.+.|..|--...+.-
T Consensus 209 Gf~~~d~~~~~yG~~l~vWD~~~------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 209 GFNPEDLEAGKYGHSLHVWDWST------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW 282 (461)
T ss_dssp ---TTTHHHH-S--EEEEEETTT------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred CCChhHhhcccccCeEEEEECCC------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence 245799999998 78888876322 235566664 455555555555666666554222221
Q ss_pred ec----cCCCCCCCCc---eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547 300 VE----QGPRTTNYPA---GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 300 ~~----~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
.. ..+....... ..+..+..-..-|+++..|.|.++|.+++=.+ |.|+.||+.++.
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-------GdvrqYDISDP~ 345 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-------GDVRQYDISDPF 345 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-------TEEEEEE-SSTT
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-------CcEEEEecCCCC
Confidence 10 0000000000 00111111234689999999999999966555 999999999754
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.08 E-value=0.024 Score=51.96 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=50.6
Q ss_pred eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC------eEEEEEecc-CCCCCCCCceEEeccccce
Q 016547 193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN-LTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~-~~~~~~~~~~~~~~~~~~~ 265 (387)
.+..||.++.++............ .+++.. ++.+.+.|+.++ .+..||..+ .. +..+..+......
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~ 505 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA 505 (557)
T ss_pred eEEEECCCCCeEeecCCCCccccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence 477888887765333222111111 122222 577777777542 356788775 22 4544444433333
Q ss_pred EEEEEEcCCCCeeEEEecCCC--eEEEEeCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK 295 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~ 295 (387)
...+++ +++ |++.|+.++ .+..||..+
T Consensus 506 ~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 506 LHTILH--DNT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ceeEEE--CCE-EEEEeeecceeehhhcCccc
Confidence 333333 344 788999888 666777665
No 380
>PHA02713 hypothetical protein; Provisional
Probab=97.08 E-value=0.13 Score=47.26 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=28.4
Q ss_pred eeEEEecCCC-----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 183 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 183 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
.+.+.|+.++ .+..||..+.++...............+.. ++.+.+.|+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~ 408 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRT 408 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCC
Confidence 7778888654 478899887764322222211111111221 67788888765
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.92 E-value=0.004 Score=35.04 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=28.8
Q ss_pred cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
....|.+++|+| ...++|.++.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 345699999999 99999999999999999984
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.82 E-value=0.063 Score=47.53 Aligned_cols=122 Identities=14% Similarity=0.288 Sum_probs=77.3
Q ss_pred CCCCCeEEEEEccCC---CeeEEEecCCCeEEEEEccCCC---CceeEEee-cc----CCCeeEEEecCCCCCeEEEeeC
Q 016547 167 GHEDTVEDVTFCPSS---AQEFCSVGDDSCLILWDARVGT---SPVIKVEK-AH----DADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 167 ~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~-~~----~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
+.-+.|.++.|.|-+ .-.+++.-....|.+|.+.-.. ........ .. .--....-|+| ....|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344679999999863 1235555677899999886221 11111111 11 11224567999 7888887777
Q ss_pred CCeEEEEEeccCCCCCCCCce-EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
...-.+++.+.. ...+ ..++ ..+-|.|.+|.+||++|+++.+..=.-++||-..
T Consensus 133 ~dvSV~~sV~~d-----~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCD-----SSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeC-----CceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 666567777753 2333 3343 5678999999999999877666555677887544
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.80 E-value=0.14 Score=47.11 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=56.9
Q ss_pred CeeEEEecCC------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe-----EEEEEeccCCCC
Q 016547 182 AQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-----VRMFDRRNLTSN 250 (387)
Q Consensus 182 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~ 250 (387)
+.+.++|+.+ ..+..||..+..+........-.... .++.- ++.+.+.|+.|+. |..||..+.+
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~-- 502 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ-- 502 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE--CCEEEEECCccCCCccceEEEEcCCCCc--
Confidence 3778888855 35778998887754333322211111 23332 6888899988873 6778877633
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe-----EEEEeCCC
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEK 295 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~-----i~vwd~~~ 295 (387)
+..+.........+-... .+..+++.|+.||. |..||...
T Consensus 503 --W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 503 --WTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred --eeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence 344433332222222222 23346788887764 44554443
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.70 E-value=0.25 Score=40.19 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=68.3
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEE-ccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEEec
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWD-ARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR 245 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~ 245 (387)
.+..-.|.+++ ...+....+...+++. ...+....... ...-...|+.+.++| ++..++.-. .++.|.+--+.
T Consensus 67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence 56777899997 6666655566666663 33333211211 111122899999999 998887766 34677776554
Q ss_pred cCCCC---CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEE
Q 016547 246 NLTSN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 290 (387)
Q Consensus 246 ~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~v 290 (387)
..... ....++.........+..++|.+++..+++....++.+..
T Consensus 145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 32221 1112222222335678999999999855444444554444
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.0093 Score=56.07 Aligned_cols=101 Identities=20% Similarity=0.307 Sum_probs=73.5
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
..++.|+..|.+...|+...-.+ ...-..-.++|++++|+. ++..++.|-.+|.|.+||+.. +++++.+..|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH 171 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence 56888999999999998764322 222234567999999999 999999999999999999998 7888888766
Q ss_pred cceEEEE---EEcCCCCeeEEEecCCCeEEEEeCC
Q 016547 263 SAAVLCV---QWSPDKSSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 263 ~~~i~~~---~~~~~~~~ll~s~~~d~~i~vwd~~ 294 (387)
..+.+++ .+..++. .+.++...|. +|.+.
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 5554443 4444555 3457766665 55543
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.28 Score=39.51 Aligned_cols=209 Identities=13% Similarity=0.196 Sum_probs=116.1
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCc-EEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC-
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD- 108 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d- 108 (387)
...-..|+|+|..+.-++.+-.-|+ ..++|..+......... ...+.+.+|. .|||||.+|...-.|
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----~~~RHfyGHG-------vfs~dG~~LYATEndf 135 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----QEGRHFYGHG-------VFSPDGRLLYATENDF 135 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----ccCceeeccc-------ccCCCCcEEEeecCCC
Confidence 3444568888877777887776665 45888887732221110 1122233442 589999999875433
Q ss_pred ----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 109 ----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 109 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|.|-|||.+.+ ...+..+..|.-.-..+.|.+|| ..
T Consensus 136 d~~rGViGvYd~r~~---------------------------------------fqrvgE~~t~GiGpHev~lm~DG-rt 175 (366)
T COG3490 136 DPNRGVIGVYDAREG---------------------------------------FQRVGEFSTHGIGPHEVTLMADG-RT 175 (366)
T ss_pred CCCCceEEEEecccc---------------------------------------cceecccccCCcCcceeEEecCC-cE
Confidence 78999998743 12224455666666788999999 55
Q ss_pred EEEecC------------------CCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCCCe----EE
Q 016547 185 FCSVGD------------------DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNS----VR 240 (387)
Q Consensus 185 l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~----i~ 240 (387)
++.+.. .-.+.+.|..+++......+. .+.-.|..++..+ ++..++.+-..|. --
T Consensus 176 lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~pp 254 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPP 254 (366)
T ss_pred EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCc
Confidence 555421 112223333333311111222 3444567777776 6655544433221 00
Q ss_pred EEEeccCCCCCCCCceEEec-------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 241 MFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+.-.... ++++.-+. .....|-+++.+.+...+.+++-..+..-+||..++
T Consensus 255 Lvg~~~~-----g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 255 LVGHFRK-----GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred ceeeccC-----CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 1111110 33333222 123457788888777766666667778899999986
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.54 E-value=0.011 Score=32.09 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCC--cEEEEecCCCcEEEEeccCC
Q 016547 32 GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQ 64 (387)
Q Consensus 32 ~~v~~i~~~~~~~--~~l~t~~~dg~v~iwd~~~~ 64 (387)
|.|++++|+|..+ ++|+..-.-|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 5789999998666 79998888899999999854
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.54 E-value=0.65 Score=42.90 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=61.6
Q ss_pred eEEEEEccCCCeeEEEecC------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547 172 VEDVTFCPSSAQEFCSVGD------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 239 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 239 (387)
.+.-.|+|+| ..+.+... .+.+.+.+++.++. .. .....|..+.|+| +|..++... +|.|
T Consensus 399 ~t~PsWspDG-~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~--~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v 470 (591)
T PRK13616 399 LTRPSWSLDA-DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV--AS---RVPGPISELQLSR-DGVRAAMII-GGKV 470 (591)
T ss_pred CCCceECCCC-CceEEEecCcceEEEeccCCCceEEEEeccCchh--hh---ccCCCcCeEEECC-CCCEEEEEE-CCEE
Confidence 6677888887 33443322 23344444444331 11 2356799999999 999888766 5777
Q ss_pred EEEEeccCCCCCCCC-ce---EEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 240 RMFDRRNLTSNGVGS-PI---NKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~-~~---~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.+=-+..... +. .+ ..+ ......+.++.|.+++. |+ .+..++.-.+|.+.-
T Consensus 471 ~Va~Vvr~~~---G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 471 YLAVVEQTED---GQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred EEEEEEeCCC---CceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEec
Confidence 6632222111 22 11 112 22334468899999998 44 444445455565554
No 389
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.41 E-value=0.89 Score=42.97 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=54.2
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccccc--CCCCCCCe------EEEeccCCCceEEEEECCC---C
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL--GATNSRPD------LILTGHQDNAEFALAMCPT---E 99 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~------~~~~~h~~~~v~~~~~~~~---~ 99 (387)
.-.|..|..+| +|.+||..|..| |.|-.+...-.....+ +.....+. ..+..+....|..+.|+|. +
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 45788999999 899998888865 5555553210000000 00000111 1122233447889999996 5
Q ss_pred CEEEEecCCCeEEEEEcCCCc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHI 120 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~ 120 (387)
..|+.-..|+++|+||+.+..
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 788888889999999997653
No 390
>PHA03098 kelch-like protein; Provisional
Probab=96.36 E-value=0.49 Score=43.55 Aligned_cols=103 Identities=6% Similarity=0.095 Sum_probs=51.2
Q ss_pred eeEEEecCC------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC--------eEEEEEeccCC
Q 016547 183 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------SVRMFDRRNLT 248 (387)
Q Consensus 183 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~ 248 (387)
.+++.|+.+ ..+..||..+.++............ .++... ++.+++.|+.++ .+..||..+.+
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 677777632 4588999887764332222111111 122222 566777776432 37888877632
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 295 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~ 295 (387)
+..+..+.........+.+ +++ +++.|+.+ ..+.+||..+
T Consensus 468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 2222222111111112222 444 66677654 4677887765
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.42 Score=38.73 Aligned_cols=177 Identities=14% Similarity=0.176 Sum_probs=100.0
Q ss_pred cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 166 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~ 244 (387)
.+-...+.++.|+|+. +.|++..+...-.++=-..++ .+...+. .-+....|.+.. ++++.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEE
Confidence 3445569999999998 566666666666666555565 3444321 223445677776 7777777777889988887
Q ss_pred ccCCCCCCC-CceEEe---ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547 245 RNLTSNGVG-SPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 245 ~~~~~~~~~-~~~~~~---~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
......... .....+ ...+.....++|.|..+.++ .+-+-.-+.||.+.............. + .... .-.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~--~-~~~~--~~f 231 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLD--P-TADR--DLF 231 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccC--c-cccc--ceE
Confidence 753110000 001111 11255678999999988766 555666688887774322211100000 0 0000 001
Q ss_pred CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
-..|.++.|++..+.|++-+ ..++.+.-.|..
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS-------~ESr~l~Evd~~ 263 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLS-------DESRRLLEVDLS 263 (316)
T ss_pred eeccccceecCCCCcEEEEe-------cCCceEEEEecC
Confidence 23578888988777666533 233666666665
No 392
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.36 E-value=0.62 Score=40.63 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=51.1
Q ss_pred cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE----EEEEEcCC--------------
Q 016547 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV----LCVQWSPD-------------- 274 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~-------------- 274 (387)
....+.+++.+| .+++.|+...=|.|.++|+.. +..++.+++..+.= ....-...
T Consensus 306 ~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 306 SKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 344578899999 888888887779999999998 77777776654321 11110000
Q ss_pred CCeeEEEecCCCeEEEEeCCCC
Q 016547 275 KSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 275 ~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
..+|++=.-.-|.|.||.++.+
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCC
Confidence 1224444556788889988875
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.35 E-value=0.33 Score=37.89 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=82.7
Q ss_pred CCeeEEEecCCCCCeEEEeeCC---------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547 215 ADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d 285 (387)
...+.-..+| +|++++-.-.| |.++.|-.. ..+..+...-.--+.++|+.+.+.+...-+.+
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--------HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cccccCccCC-CCceeeeeeccccccccccccEEEEeccC--------CCceeeehhccCCccccccccCcEEEEEccCc
Confidence 4456667788 88885433222 333433322 12222222223346789998888777788888
Q ss_pred CeEEEEeCCCCCceeccCCCCCCCCceeeeeecc----CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
-.|.-||..-..-.. ..+..++.+.. .....-.++...+|...+++.+ .++|...|..
T Consensus 180 ~~V~a~dyd~~tG~~--------snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--------g~~V~~~dp~-- 241 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDL--------SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--------GGTVQKVDPT-- 241 (310)
T ss_pred eEEeeeecCCCcccc--------cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--------CcEEEEECCC--
Confidence 888888844321111 11122333322 1112345555666665553332 3899999998
Q ss_pred cccccchhhhhhhccCceEEEeee
Q 016547 362 IYRPQDEVLAELEKFKAHVISCTS 385 (387)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~v~~~~f 385 (387)
+|+.+.++.-....|++++|
T Consensus 242 ----tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 242 ----TGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred ----CCcEEEEEEcCCCceEEEEe
Confidence 89999999988999999998
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.33 E-value=0.35 Score=44.38 Aligned_cols=122 Identities=11% Similarity=0.174 Sum_probs=70.4
Q ss_pred CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEc--CCCCeeEEEecCCCeEEEEe
Q 016547 216 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~ll~s~~~d~~i~vwd 292 (387)
.+.-+.-+. -+...++-+....+.|||.+. +....+-. ...+.|.++.|. |+++.+++.| ....|.+|-
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~------~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRS------GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYT 102 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCC------cEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEE
Confidence 344444444 444444444456799999987 44322222 346789999884 6888877555 577888875
Q ss_pred CCCCCceeccCCCCCCCCceeeeeeccCC-CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 293 YEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
-....-.. ..+.+.+-.......|+ .+|.+..|.++|..+++++ +.+.|++-.
T Consensus 103 Q~R~dy~~----~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG----------Nqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTN----KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG----------NQLFVFDKW 156 (631)
T ss_pred ccchhhhc----CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC----------CEEEEECCC
Confidence 43211111 11111111122233444 5899999999887555332 688888754
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.29 E-value=0.47 Score=38.63 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=87.3
Q ss_pred CeEEEEEccCCCeeEEEe--cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE-eccC
Q 016547 171 TVEDVTFCPSSAQEFCSV--GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNL 247 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~ 247 (387)
.+...++++++....+.. .....+.++...... .... ....+..-.|++ ++...+....+...+++. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence 688899999995444444 233445555443322 1222 234788889999 777777766666666664 2221
Q ss_pred CCCCCCCceEEeccc--cceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 248 TSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
. ... ...... ...|..+.+||||..+.+.. ..++.|.+--+.....-.. . ...............
T Consensus 99 ~----~~~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~---~---~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 99 T----GEP-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP---R---RLTGPRRVAPPLLSD 167 (253)
T ss_pred c----cee-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc---c---eeccceEecccccCc
Confidence 0 111 222211 12899999999999865554 3357777776654322100 0 000112222233568
Q ss_pred eeEEEEccCCCeEEEEe
Q 016547 324 VVDFHWNASDPWTVVSV 340 (387)
Q Consensus 324 v~~~~~~~~~~~l~~s~ 340 (387)
+++++|.+++..++++.
T Consensus 168 v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ceeeeecCCCEEEEEeC
Confidence 89999999887666543
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.28 E-value=0.54 Score=39.13 Aligned_cols=157 Identities=12% Similarity=0.135 Sum_probs=76.2
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
+-.+.+..+..++ ++++++++..-....-||-... .-....-.....|..|.|.|++...+.+ ..
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-------------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-------------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-------------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCc-------------cceEEccCccceehhceecCCCCEEEEe-CC
Confidence 3457788888777 8899988866555567775432 1112222233479999999998876654 78
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.|++=+.......... .+.......-.+..++|.+++ ...++|
T Consensus 207 g~~~~s~~~~~~~~w~~-----------------------------------~~~~~~~~~~~~ld~a~~~~~-~~wa~g 250 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSE-----------------------------------PIIPIKTNGYGILDLAYRPPN-EIWAVG 250 (302)
T ss_dssp TEEEEEE-TTEEEEE--------------------------------------B-TTSS--S-EEEEEESSSS--EEEEE
T ss_pred cEEEEccCCCCcccccc-----------------------------------ccCCcccCceeeEEEEecCCC-CEEEEe
Confidence 88888772211000000 001111123358899999887 666666
Q ss_pred cCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 189 GDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
+. |.+ +...+.++ ..... ..-...++.|.|.+ ..+-++. +.+|.|.-|
T Consensus 251 g~-G~l-~~S~DgGk--tW~~~~~~~~~~~n~~~i~f~~-~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 251 GS-GTL-LVSTDGGK--TWQKDRVGENVPSNLYRIVFVN-PDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ST-T-E-EEESSTTS--S-EE-GGGTTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred CC-ccE-EEeCCCCc--cceECccccCCCCceEEEEEcC-CCceEEE-CCCcEEEEe
Confidence 54 433 33344444 12222 23356788999986 4444444 578876544
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.24 E-value=0.11 Score=46.10 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=84.9
Q ss_pred eeeeeccee--eccccccCcceeeeeeecCCCcEEEEEecCC----CCcEEEEecCCCcEEEEeccCCCCcccccCCCCC
Q 016547 3 LWTFAMLLF--QFNEEARSPFVKKHKTIIHPGEVNRIRELPQ----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS 76 (387)
Q Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~ 76 (387)
.|.....+. ...-...++.+---..+|.-..|..+.|.|. ...+||.-. ...|.||.+....... .
T Consensus 26 aWTDGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~-------~ 97 (671)
T PF15390_consen 26 AWTDGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTER-------N 97 (671)
T ss_pred EecCCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCcccc-------c
Confidence 455554443 2222333444444455667777999999994 345676654 5689999987431111 0
Q ss_pred CCeEEEeccCCC--c--eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCC
Q 016547 77 RPDLILTGHQDN--A--EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK 152 (387)
Q Consensus 77 ~~~~~~~~h~~~--~--v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (387)
+.+.....+-.. + -..+.|+|....|+.-.....-.++++.......
T Consensus 98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV----------------------------- 148 (671)
T PF15390_consen 98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV----------------------------- 148 (671)
T ss_pred cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE-----------------------------
Confidence 111111111100 0 1256799988877765544444455554211100
Q ss_pred CCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccC
Q 016547 153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 201 (387)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 201 (387)
...+ ...+.|.|.+|.+||.+++++.+..=.-++||-..
T Consensus 149 ---------kaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 149 ---------KADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ---------EEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 0112 33578999999999977776666666678898543
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.16 Score=48.61 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=92.2
Q ss_pred CeEEEEEccCCCe-eEEEecCCCeEEEEEccCCCCce---eEEee------ccCCCeeEEEecCCCCCeEEEeeCCCeEE
Q 016547 171 TVEDVTFCPSSAQ-EFCSVGDDSCLILWDARVGTSPV---IKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVR 240 (387)
Q Consensus 171 ~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 240 (387)
++..+...+|... .++..+++-.|..||+++-.... ...+. .......++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555566666422 23333444578999998643111 11111 12234567889986667778888999999
Q ss_pred EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547 241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
+..+... ...+..+. .....++++|+|.|+.+ +.|-..|++.-|...-..+.....+ + . .-
T Consensus 182 V~~~~~~-----~~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~leik~~ip~P------p--~----~e 242 (1405)
T KOG3630|consen 182 VKSTKQL-----AQNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSLEIKSEIPEP------P--V----EE 242 (1405)
T ss_pred hhhhhhh-----hhhhcccC-cccceeeEEecccccee-eEecCCCeEEEeecccceeecccCC------C--c----CC
Confidence 9877652 22223333 45678999999999975 5898999998887654322111000 0 0 01
Q ss_pred CCCeeEEEEccCCCeEEEEe
Q 016547 321 RDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~ 340 (387)
...|.++.|-....++++-+
T Consensus 243 ~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 243 NYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CcceeEEEEecceeEEEEec
Confidence 45789999988777766543
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.10 E-value=0.61 Score=43.33 Aligned_cols=185 Identities=10% Similarity=0.099 Sum_probs=101.7
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccc------ccCCCCC--CCeEEE----eccCCCceEEEEECC-
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA------VLGATNS--RPDLIL----TGHQDNAEFALAMCP- 97 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~------~~~~~~~--~~~~~~----~~h~~~~v~~~~~~~- 97 (387)
.+..+++. ..++++++. .+.|.||+.+....... +...... ...... ..| .|+-|....
T Consensus 40 KNNLtals----q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PH---tIN~i~v~~l 111 (717)
T PF08728_consen 40 KNNLTALS----QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPH---TINFIKVGDL 111 (717)
T ss_pred ccceeEEe----cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCc---eeeEEEeccc
Confidence 34445553 156676655 57899999876544221 0000000 000001 223 255554443
Q ss_pred -CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 98 -TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 98 -~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
+...|+.|..||.|.+|.+++-.......... .+.. ......++...+.. ...+++++
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~-----------------~~~~---~~r~~i~P~f~~~v-~~SaWGLd 170 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSED-----------------NDSG---FSRLKIKPFFHLRV-GASAWGLD 170 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccc-----------------cccc---cccccCCCCeEeec-CCceeEEE
Confidence 45578899999999999886421110000000 0000 00011222233332 34789999
Q ss_pred Ec--cCCCeeEEEecCCCeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCC--CC---eEEEeeCCCeEEEEEec
Q 016547 177 FC--PSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLD--DN---LILTGSADNSVRMFDRR 245 (387)
Q Consensus 177 ~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~i~~~d~~ 245 (387)
++ ... +++|++++...|.||-....... .......+...|.+|+|-+.+ +. .+++++-.|.+-+|++.
T Consensus 171 Ih~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 171 IHDYKKS-RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCcc-eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 98 665 78888888888888866542211 111122467789999997732 22 78889999999998883
No 400
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.83 Score=39.51 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=87.0
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEE
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 114 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vw 114 (387)
+.+-|...+..++|+ ..|.+.=|-+.... ......+..-..++|.++.|++|.+.||.--.|++|.+.
T Consensus 26 ngvFfDDaNkqlfav--rSggatgvvvkgpn----------dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~ 93 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV--RSGGATGVVVKGPN----------DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFC 93 (657)
T ss_pred cceeeccCcceEEEE--ecCCeeEEEEeCCC----------CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEE
Confidence 344444333333333 34556777766541 122233444444589999999999999999999999999
Q ss_pred EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeE
Q 016547 115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 194 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 194 (387)
+...... ........+..+..|.+..|+..- -++..... -+
T Consensus 94 nf~~d~~------------------------------------~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~-G~ 134 (657)
T KOG2377|consen 94 NFIPDNS------------------------------------QLEYTQECKTKNANILGFCWTSST--EIAFITDQ-GI 134 (657)
T ss_pred ecCCCch------------------------------------hhHHHHHhccCcceeEEEEEecCe--eEEEEecC-Ce
Confidence 9842111 011112223345668999998664 34444433 35
Q ss_pred EEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547 195 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 195 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
-+|-+...+. .++..+.|...|+--.|.+ +.+.++.++
T Consensus 135 e~y~v~pekr-slRlVks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 135 EFYQVLPEKR-SLRLVKSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred EEEEEchhhh-hhhhhhhcccCccEEEEcc-ccceEeeec
Confidence 6665544432 3455667888888889988 555444433
No 401
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.11 Score=41.66 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEEccCCCeeEEEecCCCe-EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEec
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRR 245 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~ 245 (387)
...++++|..+.-++.+-.-|+ ..++|....+.+..........-.-.-.|+| ++.+|...-.| |.|-+||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 3467888877666666666665 5688888777543332221111112236899 99998876544 789999999
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEE
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 280 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~ 280 (387)
.. .+.+.++..|.-....+.+.+||+.+++
T Consensus 149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred cc-----cceecccccCCcCcceeEEecCCcEEEE
Confidence 63 5778889989888899999999996543
No 402
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.01 E-value=0.77 Score=38.49 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=61.3
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeec----------cCCCeeEEEecCCCCCeEEEeeC--------CC--eEEEEEe
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSA--------DN--SVRMFDR 244 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~--------dg--~i~~~d~ 244 (387)
++--+.+|.|+--|+............. ..+.-.-+++++ ..+.|.+--. |+ .|-++|+
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 4445677888887776654222222211 012233467776 4433333221 22 4666777
Q ss_pred ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeE-EEecCCCeEEEEeCCCCC
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll-~s~~~d~~i~vwd~~~~~ 297 (387)
.+ .+.+..+.. +.++.+|+.+.+.+-+| +....++.+.+||..+++
T Consensus 277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 77 788888873 45688999998876444 445568999999999863
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.82 Score=37.13 Aligned_cols=143 Identities=16% Similarity=0.070 Sum_probs=91.0
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
+-+..+.++. ++...+..+.-+++.|+.+...|....+....+--.++.. .|++..++..|.-..+.|+.+++.
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCC
Confidence 4466777774 4566677788899999999887766655544444445554 688999988777788899988643
Q ss_pred CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
.............-..++.|.+- -+ .+..|+-+.+-|+.....+ .++.. ......+.++..
T Consensus 161 ---P~lagrya~~~~d~~~v~ISGn~--AY-vA~~d~GL~ivDVSnp~sP------------vli~~-~n~g~g~~sv~v 221 (370)
T COG5276 161 ---PQLAGRYALPGGDTHDVAISGNY--AY-VAWRDGGLTIVDVSNPHSP------------VLIGS-YNTGPGTYSVSV 221 (370)
T ss_pred ---ceeeeeeccCCCCceeEEEecCe--EE-EEEeCCCeEEEEccCCCCC------------eEEEE-EecCCceEEEEe
Confidence 22223333333434567776553 33 4556888999999986544 22222 222336777777
Q ss_pred ccCCCeEE
Q 016547 330 NASDPWTV 337 (387)
Q Consensus 330 ~~~~~~l~ 337 (387)
+++..+++
T Consensus 222 sdnr~y~v 229 (370)
T COG5276 222 SDNRAYLV 229 (370)
T ss_pred cCCeeEEE
Confidence 77655544
No 404
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.78 E-value=0.25 Score=37.50 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.9
Q ss_pred CCeEEEEEccCC-----CeeEEEecCCCeEEEEEcc
Q 016547 170 DTVEDVTFCPSS-----AQEFCSVGDDSCLILWDAR 200 (387)
Q Consensus 170 ~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~ 200 (387)
..+..++|+|.| +.+|++.+.++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999954 4678899999999999765
No 405
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.73 E-value=0.19 Score=43.22 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=94.2
Q ss_pred eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCC----Cee-EEEecCCCCCeEEEeeCCC
Q 016547 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLH-CVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~i~-~~~~~~~~~~~l~~~~~dg 237 (387)
..+..-...+..+-..|++ +.+..-+. ..+.++++.+......+......+ .|+ ++..-. .+.-+++++.||
T Consensus 214 ~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG 290 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDG 290 (733)
T ss_pred hhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCC
Confidence 3344455678888899999 55555443 678888887654222211111111 122 222223 577788888998
Q ss_pred eEEEE-EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547 238 SVRMF-DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 316 (387)
Q Consensus 238 ~i~~~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 316 (387)
-|.-| |.+.... +....++.++-....+..+.-. +.+.-|++-+.+|.+.++.-..... ++.
T Consensus 291 ~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~--------------lL~- 353 (733)
T COG4590 291 LVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKL--------------LLF- 353 (733)
T ss_pred ceeeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcc--------------eeh-
Confidence 87655 6664321 1122233333223344333322 2333567888888888876554211 111
Q ss_pred eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
..--..+.-+++||.+.+++.- ..|.++++.+++.
T Consensus 354 -~~~~~~~~~~~~Sp~~~~Ll~e---------~~gki~~~~l~Nr 388 (733)
T COG4590 354 -ERAYQAPQLVAMSPNQAYLLSE---------DQGKIRLAQLENR 388 (733)
T ss_pred -hhhhcCcceeeeCcccchheee---------cCCceEEEEecCC
Confidence 1112255678899999998842 2389999999854
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.72 E-value=0.02 Score=53.00 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=46.1
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC---CCCEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLS 104 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~---~~~~l~s 104 (387)
.+..|.|-.++|-.-+-..++ -.-|...|||++--.-. -............+..+.-+.|.| +.-++..
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~------iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~ 200 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE------IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICY 200 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccc------cccceEEeecCcCCCCcceeeecccccccceeee
Confidence 366788888887663333333 33478899998753110 001111112222222334444544 6667778
Q ss_pred ecCCCeEEEEEcCC
Q 016547 105 GGKDKSVVLWSIQD 118 (387)
Q Consensus 105 ~~~d~~i~vwd~~~ 118 (387)
+-.+++|++...+.
T Consensus 201 ~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINR 214 (1283)
T ss_pred ccCCCceeEeeech
Confidence 88889999887764
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.72 E-value=0.055 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.0
Q ss_pred CCeEEEEEccCCC--eeEEEecCCCeEEEEEccC
Q 016547 170 DTVEDVTFCPSSA--QEFCSVGDDSCLILWDARV 201 (387)
Q Consensus 170 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 201 (387)
+.|.++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998764 6888888899999999995
No 408
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.0013 Score=56.16 Aligned_cols=142 Identities=8% Similarity=0.108 Sum_probs=99.1
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC
Q 016547 92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 171 (387)
Q Consensus 92 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (387)
...|-+.+.-++.++.+..+..||-....... ...++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le------------------------------------------~n~tg~ 76 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE------------------------------------------LNPTGK 76 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecc------------------------------------------cCCchh
Confidence 56778877778888888888888865321110 112345
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
...++|..+++..++.+-..+.+.+||+.+..-..+..-..+... -+.|++ ....++.+...|.+.+++..+
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgt----- 148 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGT----- 148 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccc-----
Confidence 667888888877778888999999999987652222111122222 277898 888889999999999999987
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
.+.+.....|...++++++.+.+.. +.++.|.
T Consensus 149 -sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~ 180 (615)
T KOG2247|consen 149 -SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDN 180 (615)
T ss_pred -hhhhhhhcccccceeEEEeccccee--eecCcHH
Confidence 5555555558889999999998863 3444443
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=95.63 E-value=0.85 Score=41.26 Aligned_cols=100 Identities=8% Similarity=-0.032 Sum_probs=49.4
Q ss_pred eeEEEecCCC---eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 183 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 183 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
.+.+.|+.++ .+..||.++.++............ .+++ .- ++.+.+.|+ .+.+||.++.+ +..+..+
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~-~~~IYv~GG---~~e~ydp~~~~----W~~~~~m 433 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VF-GRRLFLVGR---NAEFYCESSNT----WTLIDDP 433 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EE-CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence 7777777553 467888877664322111111111 1222 22 566667663 56778876532 3333333
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 295 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~ 295 (387)
.........+.+ +++ |++.|+.+ ..+..||...
T Consensus 434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence 221222222222 444 67777754 2456666654
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.47 E-value=1.5 Score=38.04 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCeEEEEEccCCCeeEEEec-----------CCC-eEEEEEccCC--CCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 170 DTVEDVTFCPSSAQEFCSVG-----------DDS-CLILWDARVG--TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
.....|+|.++| +++++-. ..+ .|.+++-..+ +......+.......+.+++.+ ++ +++ ++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence 446788999998 6555532 223 6777765432 2112233433344568899988 77 444 444
Q ss_pred CCeEEEEEeccCCCCC-CCCce-EEecc----ccceEEEEEEcCCCCeeEEEe
Q 016547 236 DNSVRMFDRRNLTSNG-VGSPI-NKFEG----HSAAVLCVQWSPDKSSVFGSS 282 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~-~~~~~-~~~~~----~~~~i~~~~~~~~~~~ll~s~ 282 (387)
....++.|........ ..+.+ ..+.. +......++|.|||...++.+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4433343443211000 01112 12222 234578899999998444333
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.40 E-value=0.69 Score=42.52 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=75.2
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec--CCCCCeEEEeeCCCeEEEEEeccC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
....-+.-+.-+ +..++-+....+.|||.+.+.......+ ...+.|..+.|. | +++.+++.+-.+.|.+|--...
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccch
Confidence 344555555544 4444555566799999988773222233 457789999984 5 6788888888888888854211
Q ss_pred ---CCCCCCCceEEec--ccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 248 ---TSNGVGSPINKFE--GHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 248 ---~~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
...+...++.++. .|. .+|.+..|.++|.. +.|+ ++.+.|+|-..
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L--vV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTL--VVGS-GNQLFVFDKWL 157 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeE--EEEe-CCEEEEECCCc
Confidence 1111244555442 333 57899999999973 3343 46788887544
No 412
>PHA03098 kelch-like protein; Provisional
Probab=95.36 E-value=2.3 Score=39.27 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=33.9
Q ss_pred eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------CeEEEEEecc
Q 016547 183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRN 246 (387)
Q Consensus 183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~ 246 (387)
.+++.|+.+ ..+..||..+.++........ ...-.+++.. ++.+++.|+.+ +.+..||..+
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 677778765 347788888766432222211 1111122222 56777777742 3577888775
No 413
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.32 E-value=1.4 Score=36.51 Aligned_cols=117 Identities=5% Similarity=0.061 Sum_probs=68.0
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE------------eeccCCCeeEEE-ecCCCCCeEEEeeCCC
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV------------EKAHDADLHCVD-WNPLDDNLILTGSADN 237 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~i~~~~-~~~~~~~~l~~~~~dg 237 (387)
.|..+...|+- +.+++-+ |+.++++++..-....... .......+...+ -....+...++.....
T Consensus 37 ~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 37 SITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred eEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 49999999887 4444443 5999999987654222110 111223344444 1121444445555666
Q ss_pred eEEEEEeccCCCCCCC-CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 238 SVRMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.|.+|........ . +...++. ....+..++|.++ .++.|. .....+.|+.+.
T Consensus 115 ~i~i~~~~~~~~~--f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~ 167 (275)
T PF00780_consen 115 KILIYEWNDPRNS--FSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTG 167 (275)
T ss_pred EEEEEEEECCccc--ccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCC
Confidence 8999988763110 2 4556655 3477889999844 244554 445788888854
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.27 E-value=2.6 Score=39.43 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=74.1
Q ss_pred eEEEEEccC-CCeeEEEecCCCeEEEEEccC-------C----CC-------ceeEEeeccCCCeeEEEec--CCCCCeE
Q 016547 172 VEDVTFCPS-SAQEFCSVGDDSCLILWDARV-------G----TS-------PVIKVEKAHDADLHCVDWN--PLDDNLI 230 (387)
Q Consensus 172 v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-------~----~~-------~~~~~~~~~~~~i~~~~~~--~~~~~~l 230 (387)
|+-|....- +...|+.|..||.|.+|.+++ . +. .....+ .-.....+++++ . ..+++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEE
Confidence 444443322 226888999999999997632 1 00 001111 234577889998 6 78899
Q ss_pred EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC-----CeeEEEecCCCeEEEEeCC
Q 016547 231 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 231 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~ll~s~~~d~~i~vwd~~ 294 (387)
|+++....|.||-....... .....+. .+...|.+|+|-++. ...+++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r--~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDER--FYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccc--ccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 99988888888876642110 1111111 256678899997754 2256788889999999883
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.19 E-value=1.6 Score=36.46 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
.-...+..+.-++++ .+++++.......-||.-.... ..........|..|.|.| ++.+.+++ ..|.|++=+...
T Consensus 142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TT
T ss_pred CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccc--eEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCC
Confidence 334678888889998 7787777766677888654432 222233567899999999 77665544 888888876211
Q ss_pred CCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
.. ....+.+..+..-...+..++|.+++. +.|+|+ .|.+ +...+.+ +. .+.......-...++.
T Consensus 217 ~~-~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgG-kt-----------W~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 217 DG-ETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGG-KT-----------WQKDRVGENVPSNLYR 280 (302)
T ss_dssp EE-EEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTT-SS------------EE-GGGTTSSS---E
T ss_pred Cc-cccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCC-cc-----------ceECccccCCCCceEE
Confidence 00 000111111222334589999999877 566665 4433 2333332 11 1111111223345788
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
+.|.++.+-++ -|.+|.|.-|
T Consensus 281 i~f~~~~~gf~---------lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFV---------LGQDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEE---------E-STTEEEEE
T ss_pred EEEcCCCceEE---------ECCCcEEEEe
Confidence 88876544333 2556777655
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.98 E-value=2.2 Score=40.47 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcC-ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 86 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 86 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
..-.|..|.++|+|++|+..|..| |.|-.+...-. ...+.. +...+... . ........
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~-------g~~~i~Cr-------t------~~v~~~~~ 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFED-------GKKEINCR-------T------VPVDERFF 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccC-------CCcceeEE-------E------EEechhhc
Confidence 334688999999999999888654 55555532100 000000 00000000 0 00000011
Q ss_pred ecCCCCCeEEEEEccCC--CeeEEEecCCCeEEEEEccCCCC
Q 016547 165 YNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS 204 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 204 (387)
...+...|..+.|+|.+ +..|+.-..|+++++||+.....
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 12345679999999974 36788888999999999976553
No 417
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.88 E-value=0.067 Score=45.74 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=94.8
Q ss_pred EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
+..... .|..+-..|||+.|..-+. .++.++++.+.......-. +...++
T Consensus 216 L~~~~~-~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~---------------------------~dspg~- 265 (733)
T COG4590 216 LSVPFS-DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLV---------------------------DDSPGD- 265 (733)
T ss_pred cCCCcc-chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhh---------------------------hcCCCc-
Confidence 444433 5788899999998776654 6888998876432111000 000000
Q ss_pred ceeecCCCCCeE-EEEEccCCCeeEEEecCCCeEEEE-EccCCCCcee---EEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 162 RGIYNGHEDTVE-DVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVI---KVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 162 ~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
....|+ .+.... |+..++.++.||.|.-| |++....+.. +.+.-...++..+.-.. +.+-+++-+..
T Consensus 266 ------~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~ 337 (733)
T COG4590 266 ------SRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRN 337 (733)
T ss_pred ------hHHHHHHHHHHHh-CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCC
Confidence 001111 111112 33667888888888877 6655443322 22222233444443333 45667777788
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
|++..+.... .+.+. ++..-..+.-+++||.+.+++ + -+.|.|+++.+++..
T Consensus 338 G~L~~f~st~------~~~lL-~~~~~~~~~~~~~Sp~~~~Ll-~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 338 GTLQSFYSTS------EKLLL-FERAYQAPQLVAMSPNQAYLL-S-EDQGKIRLAQLENRN 389 (733)
T ss_pred Cceeeeeccc------Cccee-hhhhhcCcceeeeCcccchhe-e-ecCCceEEEEecCCC
Confidence 8888776554 23322 222223567799999999864 3 457889999998753
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.85 E-value=0.06 Score=50.08 Aligned_cols=126 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-----ceeEEeeccCCCeeEEEecCC--CCCeEEEeeC
Q 016547 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPL--DDNLILTGSA 235 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~ 235 (387)
...++..+.+-.++|.....-.+. -.-|.+.+||+..-+. ..+.....-...+.-+.|.|. ...++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 345677788888888432211121 3346788998865221 112223333445556666653 3456666667
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEE-----------EcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
++.|++..... ....-+.+|...+..++ .+|||. +||..+.||.++.|.+.-.++
T Consensus 204 ~~~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 204 GGEIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred CCceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 88888887764 12233445665554443 578888 577888888888888765444
No 419
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=1 Score=39.00 Aligned_cols=107 Identities=9% Similarity=0.165 Sum_probs=74.3
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
..++|.++.|++|+ +.+++--.++.|.+++....+.. .....+.....|....|.. ..-+|.-+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEc
Confidence 45689999999998 88999999999999998443311 1222333445688899986 35666666666 6666655
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~ 283 (387)
.. ...++..+.|...|+-..|.++-+.++.+.+
T Consensus 141 pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 141 PE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hh-----hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 43 4556666778888888889888775554444
No 420
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.75 E-value=0.93 Score=39.84 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=80.0
Q ss_pred CCCCCCCCCceeecCCCCCeEEEEEccCCC------eeEEEecCCCeEEEEEccCCCCceeE-Eee--ccCCCeeEEEec
Q 016547 153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIK-VEK--AHDADLHCVDWN 223 (387)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~--~~~~~i~~~~~~ 223 (387)
-.+...++.+..+..|..- -+.|.|... ..-++|-.+..|.-.|.+........ ... .......+..-.
T Consensus 494 kmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT 571 (776)
T COG5167 494 KMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT 571 (776)
T ss_pred eeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccc
Confidence 3344555556666666553 567777531 12334445556666666543311111 111 111222222222
Q ss_pred CCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
...++|+++..|-|++||.-. ......+.+....|..+..+.+|.++||+| ...+.+-|++-
T Consensus 572 --esGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 572 --ESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred --cCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 467999999999999999764 344455667788899999999999998877 56788888764
No 421
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.52 E-value=4.7 Score=38.76 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=47.0
Q ss_pred CCCcEEEEEecCC--CCc---EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec--cCCCceEEEEECCCCCEE
Q 016547 30 HPGEVNRIRELPQ--NTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 30 h~~~v~~i~~~~~--~~~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~v~~~~~~~~~~~l 102 (387)
-..+|.|+.++|- +.+ +++.|..+..+.+--........ ....+.+ -+. .|.-.++-.|..+|
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~---------~~~~l~~~~iPR-SIl~~~~e~d~~yL 598 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI---------THEQLSGEIIPR-SILLTTFEGDIHYL 598 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee---------eeeccCCCccch-heeeEEeeccceEE
Confidence 4678999999973 333 88999877666554332221000 0000111 111 24455666678899
Q ss_pred EEecCCCeEEEEEcCC
Q 016547 103 LSGGKDKSVVLWSIQD 118 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~ 118 (387)
+++..||.+.-+.++.
T Consensus 599 lvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 599 LVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEcCCceEEEEEEEc
Confidence 9999999988776654
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.52 E-value=2.1 Score=34.65 Aligned_cols=196 Identities=8% Similarity=0.044 Sum_probs=103.0
Q ss_pred eeeeeeecCCCcE--EEEEecCCCCcEEEEecCCC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 22 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 22 ~~~~~~~~h~~~v--~~i~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
.+....+.|.... ..+.|.. ++.++-+.+.-| .|+.+|+.+++ ......-...-.=-.++...
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~------------~~~~~~l~~~~FgEGit~~~ 99 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGK------------VLQSVPLPPRYFGEGITILG 99 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSS------------EEEEEE-TTT--EEEEEEET
T ss_pred eEEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCc------------EEEEEECCccccceeEEEEC
Confidence 4566777786554 4677756 677777776655 78999999983 22222211111112344432
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
+ +...-.=.++...+||.++.+.. ..+. ....-+.++
T Consensus 100 d-~l~qLTWk~~~~f~yd~~tl~~~----------------------------------------~~~~-y~~EGWGLt- 136 (264)
T PF05096_consen 100 D-KLYQLTWKEGTGFVYDPNTLKKI----------------------------------------GTFP-YPGEGWGLT- 136 (264)
T ss_dssp T-EEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEE--SSS--EEE-
T ss_pred C-EEEEEEecCCeEEEEccccceEE----------------------------------------EEEe-cCCcceEEE-
Confidence 2 22223346789999998753222 2221 123456666
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
.++ ..|+.......++++|..+.+........... ..++-+.|. +|...|=.=....|...|..+ ++
T Consensus 137 -~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t------G~ 206 (264)
T PF05096_consen 137 -SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET------GK 206 (264)
T ss_dssp -ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-------B
T ss_pred -cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC------Ce
Confidence 455 34555555678999998876522111122222 234556665 355555444455566666666 55
Q ss_pred ceEEec---------------cccceEEEEEEcCCCCeeEEEec
Q 016547 255 PINKFE---------------GHSAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 255 ~~~~~~---------------~~~~~i~~~~~~~~~~~ll~s~~ 283 (387)
.+..+. ....-.+.||+.|....++++|-
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 544431 01356899999999888888884
No 423
>PRK10115 protease 2; Provisional
Probab=94.51 E-value=4.6 Score=38.52 Aligned_cols=115 Identities=8% Similarity=0.029 Sum_probs=63.5
Q ss_pred ceEEEEECCCCCEEEEecC-----CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547 89 AEFALAMCPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 163 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (387)
.+..+.|+|||++|+.+.. .-.|++-|+.++.... .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~---------------------------------------~ 168 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP---------------------------------------E 168 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC---------------------------------------c
Confidence 4677899999998875432 2357777876542110 0
Q ss_pred eecCCCCCeEEEEEccCCCeeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCee-EEEecCCCCCeEEEeeC--
Q 016547 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSA-- 235 (387)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~-- 235 (387)
.+.. . . ..++|.+++..++.+...+ ..|..+++.+........+........ .+..+. ++.+++..+.
T Consensus 169 ~i~~-~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~ 244 (686)
T PRK10115 169 LLDN-V-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASA 244 (686)
T ss_pred cccC-c-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECC
Confidence 1111 1 1 4589999985555554322 467888888773222233332222232 223333 6666555444
Q ss_pred -CCeEEEEEecc
Q 016547 236 -DNSVRMFDRRN 246 (387)
Q Consensus 236 -dg~i~~~d~~~ 246 (387)
++.+.+++...
T Consensus 245 ~~~~~~l~~~~~ 256 (686)
T PRK10115 245 TTSEVLLLDAEL 256 (686)
T ss_pred ccccEEEEECcC
Confidence 35788888543
No 424
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.48 E-value=3.7 Score=37.34 Aligned_cols=30 Identities=37% Similarity=0.634 Sum_probs=25.3
Q ss_pred CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
.+..+++++.||.++.+|.++ ++.+-+.+.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~t------G~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATT------GKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCC------CceeeEEEC
Confidence 467888889999999999999 888877663
No 425
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.45 E-value=1.2 Score=38.84 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=56.1
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-----
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT----- 98 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~----- 98 (387)
...+......+.+|..+| ++++.|+...=|.|.++|+.++ ..++.++|..+..+.=+.....
T Consensus 300 r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~------------~vvrmWKGYRdAqc~wi~~~~~~~~~~ 366 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARG------------IVVRMWKGYRDAQCGWIEVPEEGDRDR 366 (415)
T ss_pred EEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------hhhhhhccCccceEEEEEeeccccccc
Confidence 334445667799999999 7888888877899999999998 6666677766632211111111
Q ss_pred ------------CCE-EEEecCCCeEEEEEcCCCc
Q 016547 99 ------------EPY-VLSGGKDKSVVLWSIQDHI 120 (387)
Q Consensus 99 ------------~~~-l~s~~~d~~i~vwd~~~~~ 120 (387)
..+ ++-+-.-|.|.||.++.+.
T Consensus 367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred ccccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence 112 3346678889999987653
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.40 E-value=2.9 Score=37.01 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=83.7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-------CCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-------DDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
++..|+....++-.|++.++ .+.....|... -+.|.|. +.+.| +|-.+..|.-.|.|.. +..+
T Consensus 482 i~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~-----gNKi 551 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRAR-----GNKI 551 (776)
T ss_pred EEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEeccccc-----CCce
Confidence 34455556667777777777 55566555544 5666662 12333 4445555555576653 3233
Q ss_pred EEeccc----cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 257 NKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 257 ~~~~~~----~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
..-+.. ....++..-..+| + +|.++..|-|++||--... ....+.+-...|..+..+.+
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesG-y-Ia~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESG-Y-IAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred eeeeehhccccccccccccccCc-e-EEEecCCCceeeehhhcch---------------hhhcCcccccceeeeEeecC
Confidence 222210 1122233333344 3 6799999999999965421 12234566778999999999
Q ss_pred CCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 333 DPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
|.+++++|- ..+.+-|+.
T Consensus 615 Gk~ilaTCk---------~yllL~d~~ 632 (776)
T COG5167 615 GKHILATCK---------NYLLLTDVP 632 (776)
T ss_pred CcEEEEeec---------ceEEEEecc
Confidence 999999886 567777665
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.31 E-value=3.3 Score=36.04 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=36.5
Q ss_pred CCeEEEEEccCCCeeEEEecC-------------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE
Q 016547 170 DTVEDVTFCPSSAQEFCSVGD-------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI 230 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (387)
.....++|.|+| .+.++-+. .|.|.-+|....+ ...+.........++|+| +++++
T Consensus 124 ~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~rnp~Gl~~d~-~G~l~ 198 (367)
T TIGR02604 124 HSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK---LRVVAHGFQNPYGHSVDS-WGDVF 198 (367)
T ss_pred ccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe---EEEEecCcCCCccceECC-CCCEE
Confidence 446788999998 55554331 1445555555444 222222234467899999 88887
Q ss_pred EEeeCC
Q 016547 231 LTGSAD 236 (387)
Q Consensus 231 ~~~~~d 236 (387)
++-..+
T Consensus 199 ~tdn~~ 204 (367)
T TIGR02604 199 FCDNDD 204 (367)
T ss_pred EEccCC
Confidence 764433
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=93.59 E-value=5.5 Score=36.15 Aligned_cols=63 Identities=6% Similarity=0.040 Sum_probs=34.2
Q ss_pred CCCeeEEEecCC--CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEecc
Q 016547 180 SSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRN 246 (387)
Q Consensus 180 ~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~ 246 (387)
++ .+.+.|+.+ ..+..||..+.++.....+...... .+++.. ++.+.+.|+.++ .+..||.++
T Consensus 318 ~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 318 NN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CC-EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 44 777888754 3578888776553222222111111 122222 677888887654 466787765
No 429
>PRK10115 protease 2; Provisional
Probab=93.49 E-value=7.3 Score=37.20 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=42.4
Q ss_pred cEEEEEecCCCCcEEEEecC-CC----cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 33 EVNRIRELPQNTKIVATHTD-SP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~-dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.+..+.++| ++++|+-+.+ +| .|++-|+.+++... ..+.+ . -..++|.+|++.|+....
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----------~~i~~-~---~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----------ELLDN-V---EPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----------ccccC-c---ceEEEEeeCCCEEEEEEe
Confidence 366778888 7777776533 23 58888888773111 11111 1 136899999987665543
Q ss_pred C------CeEEEEEcCCC
Q 016547 108 D------KSVVLWSIQDH 119 (387)
Q Consensus 108 d------~~i~vwd~~~~ 119 (387)
+ ..|..+++.++
T Consensus 192 ~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred cCCCCCCCEEEEEECCCC
Confidence 2 35666676654
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.21 E-value=3.2 Score=32.31 Aligned_cols=106 Identities=13% Similarity=0.256 Sum_probs=66.3
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC------eEEEE-EeccCCCCCCCCce
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMF-DRRNLTSNGVGSPI 256 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~~~-d~~~~~~~~~~~~~ 256 (387)
.|+.+...+.|.+|++.....+....+.. -+.|..+.++. .|+++++--.+. .+|+| +.+..... ..++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~v 105 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSPV 105 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCcE
Confidence 34444667789999999666666666654 47899999999 899999865432 45654 22221000 1111
Q ss_pred E-----------------------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 257 N-----------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 257 ~-----------------------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
. ++. -..++.+++-.|....|+ .|+ ++++.+|.+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 1 111 234567888888655565 454 678999998764
No 431
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.03 E-value=0.56 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=21.9
Q ss_pred ccceEEEEEEcCCCCeeEEEecCC--CeEEEE
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAED--GLLNIW 291 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vw 291 (387)
....-....|+|||++|+.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999988777777 766665
No 432
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.72 E-value=8 Score=35.57 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.6
Q ss_pred eeEEEecCCCeEEEEEccCCC
Q 016547 183 QEFCSVGDDSCLILWDARVGT 203 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~ 203 (387)
..++.+..+|.+.+.|.++++
T Consensus 316 ~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 316 KLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEEEeCCCceEEEEECCCCc
Confidence 478889999999999999887
No 433
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.39 E-value=5.5 Score=32.93 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCCCeEEEEEccCCCeeEEEec------CCCeEEEEEccCCCCceeEEeec-----cCCCeeEEEecCCCCC-eEEEee-
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDN-LILTGS- 234 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~-~l~~~~- 234 (387)
-.+.|+.+.|..+. ++++.|. ....+..||..+... ..+.. -.++++.+.+...+.. +.+.|.
T Consensus 35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w---~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTW---SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCee---eecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence 35689999998555 6777664 456788999887763 22222 3467888877543444 444443
Q ss_pred CCC--eEEEEEecc
Q 016547 235 ADN--SVRMFDRRN 246 (387)
Q Consensus 235 ~dg--~i~~~d~~~ 246 (387)
.+| .|..||-..
T Consensus 111 ~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 111 ANGSTFLMKYDGSS 124 (281)
T ss_pred cCCCceEEEEcCCc
Confidence 233 466666554
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.34 E-value=0.62 Score=36.89 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=50.4
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe----ccCCCceEEEEECCCCCEEEEecCC
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT----GHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
++..+.. .+.+|++-+.+|.+++||+.+.+...... ...++.... ......|..+.++.+|.-+++-+ +
T Consensus 14 ~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~---Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n 86 (219)
T PF07569_consen 14 PVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPV---SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N 86 (219)
T ss_pred ceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCc---cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C
Confidence 4444543 56778888999999999999885433210 001111000 01223588999998888777765 5
Q ss_pred CeEEEEEcCCC
Q 016547 109 KSVVLWSIQDH 119 (387)
Q Consensus 109 ~~i~vwd~~~~ 119 (387)
|....|+.+-+
T Consensus 87 g~~y~y~~~L~ 97 (219)
T PF07569_consen 87 GDSYSYSPDLG 97 (219)
T ss_pred CCEEEeccccc
Confidence 78888887643
No 435
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=3.5 Score=40.91 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=90.2
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEe-cCC------CCCeEEEeeCCCeEEEEEe
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW-NPL------DDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-~~~------~~~~l~~~~~dg~i~~~d~ 244 (387)
-..+-+.|.=++..+| -|+.+.+|+.+++. ....+.+-...|..+.. -|. .=+++++-+.--.|.++-+
T Consensus 81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eeeeccchhhcceEEE--eCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEE
Confidence 3444455543243444 57899999999855 23444444555555543 220 2233344444444555544
Q ss_pred ccCCCCCC---CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-----------CCCC
Q 016547 245 RNLTSNGV---GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----------TNYP 310 (387)
Q Consensus 245 ~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------~~~~ 310 (387)
.-...... .....++......|+++....+|+ +|.+| .|| .+|.+.-....--..... ...|
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 33211000 011123333456789999888888 66444 566 556554322211111100 0011
Q ss_pred ceeeeeec-cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 311 AGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 311 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
. +..+. .+..+|..++.......+. +-+..|+|++|++..
T Consensus 233 s--~~~~~~~~~dpI~qi~ID~SR~IlY--------~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 S--LLSVPGSSKDPIRQITIDNSRNILY--------VLSEKGTVSAYDIGG 273 (1311)
T ss_pred h--hhcCCCCCCCcceeeEeccccceee--------eeccCceEEEEEccC
Confidence 1 22333 5677999999987666555 556669999999984
No 436
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.20 E-value=7.7 Score=34.18 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=85.9
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecC---CCC-CeEEEeeCCCeEEEEEeccCCCC-C
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNP---LDD-NLILTGSADNSVRMFDRRNLTSN-G 251 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~---~~~-~~l~~~~~dg~i~~~d~~~~~~~-~ 251 (387)
+++...+++|+.+|.++||+....... -+.....-..+|..+..-. ... ..||+ =.-..+.+|.+...... .
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 444568999999999999998664421 1222234457888887542 122 34444 45677888888542211 0
Q ss_pred CC--CceEEecccc--ceEEEEEEcC----CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 252 VG--SPINKFEGHS--AAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 252 ~~--~~~~~~~~~~--~~i~~~~~~~----~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
.+ -.+..+..|. .....++.-| .++.+++.=+.||.+.+|+-+... +..+-..---
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----------------f~~~lp~~ll 176 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----------------FSRFLPDFLL 176 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----------------EEEEcCCCCC
Confidence 01 1122222232 2223333322 234567788999999999977631 1111111222
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
..-+.+.+.-+.++ +++.+..|.-|+...
T Consensus 177 PgPl~Y~~~tDsfv--------t~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 177 PGPLCYCPRTDSFV--------TASSSWTLECYKYQD 205 (418)
T ss_pred CcCeEEeecCCEEE--------EecCceeEEEecHHH
Confidence 34466777666666 444446777776653
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.01 E-value=0.029 Score=48.27 Aligned_cols=134 Identities=13% Similarity=0.286 Sum_probs=89.2
Q ss_pred CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~ 294 (387)
.......|-| .+.-++.++.+..+..||-. ++.+.+.. ..+....++|..++..+++.+-..+.+.+||+.
T Consensus 35 v~pi~~~w~~-e~~nlavaca~tiv~~YD~a-------gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 35 VGPIIHRWRP-EGHNLAVACANTIVIYYDKA-------GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cccceeeEec-CCCceehhhhhhHHHhhhhh-------cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 3444567778 45558888889899999866 45555544 344556788888888777777788999999998
Q ss_pred CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
+....+ +..-..|.... +.|++....++ .|-..|.+.|++.. ....+...-
T Consensus 106 ~eytqq-------------LE~gg~~s~sl--l~wsKg~~el~--------ig~~~gn~viynhg------tsR~iiv~G 156 (615)
T KOG2247|consen 106 SEYTQQ-------------LESGGTSSKSL--LAWSKGTPELV--------IGNNAGNIVIYNHG------TSRRIIVMG 156 (615)
T ss_pred hhhHHH-------------HhccCcchHHH--HhhccCCcccc--------ccccccceEEEecc------chhhhhhhc
Confidence 742221 11111122222 67888777777 56666999999988 555555555
Q ss_pred ccCceEEEeeec
Q 016547 375 KFKAHVISCTSK 386 (387)
Q Consensus 375 ~~~~~v~~~~f~ 386 (387)
.|...+++.++.
T Consensus 157 kh~RRgtq~av~ 168 (615)
T KOG2247|consen 157 KHQRRGTQIAVT 168 (615)
T ss_pred ccccceeEEEec
Confidence 577777777664
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.91 E-value=1.2 Score=35.33 Aligned_cols=82 Identities=7% Similarity=0.149 Sum_probs=50.6
Q ss_pred EECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547 94 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 173 (387)
Q Consensus 94 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 173 (387)
.+..++++|++-..+|.+++||+.+.+.........+..... .. .. ......|.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~----------------------~~--~~--~~~~~~i~ 70 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSS----------------------PV--SD--KSSSPNIT 70 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccc----------------------cc--cc--CCCCCcEE
Confidence 355578899999999999999999875543321100000000 00 00 03456788
Q ss_pred EEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547 174 DVTFCPSSAQEFCSVGDDSCLILWDARVGT 203 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 203 (387)
.+.+..+| .-+++- .+|..+.|+..-+.
T Consensus 71 ~~~lt~~G-~PiV~l-sng~~y~y~~~L~~ 98 (219)
T PF07569_consen 71 SCSLTSNG-VPIVTL-SNGDSYSYSPDLGC 98 (219)
T ss_pred EEEEcCCC-CEEEEE-eCCCEEEeccccce
Confidence 89998887 445544 45788999877655
No 439
>PLN02193 nitrile-specifier protein
Probab=91.89 E-value=8.9 Score=34.74 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=32.3
Q ss_pred eeEEEecCCC-----eEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCC----CeEEEEEecc
Q 016547 183 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRN 246 (387)
Q Consensus 183 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~ 246 (387)
++++.|+.++ .+..||+.+.++........ ....-..+... ++.+++.++.+ ..+.+||+.+
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCC
Confidence 6777776543 46778887765322111000 00011122222 56677777655 4588888876
No 440
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.73 E-value=7.6 Score=34.64 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=52.3
Q ss_pred CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC---CCCCceEEec-----------cccceEEEEEEcCCC---Cee
Q 016547 216 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---GVGSPINKFE-----------GHSAAVLCVQWSPDK---SSV 278 (387)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~-----------~~~~~i~~~~~~~~~---~~l 278 (387)
.|..+..++ .|..++..+.+|.+.++=.+..... ..+++....+ ...-.+..++|+|+. ..+
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467788899 8999999999997665532211000 0022211111 122346788999986 444
Q ss_pred EEEecCCCeEEEEeCCCCCceecc
Q 016547 279 FGSSAEDGLLNIWDYEKVGKKVEQ 302 (387)
Q Consensus 279 l~s~~~d~~i~vwd~~~~~~~~~~ 302 (387)
..-+.|..|++||+....+...+
T Consensus 184 -~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 184 -VLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -EEEecCcEEEEEecCCcchhhcc
Confidence 45667999999999986555433
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.58 E-value=5.4 Score=31.11 Aligned_cols=116 Identities=9% Similarity=0.141 Sum_probs=67.1
Q ss_pred CeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec-CC--C---eEEEE---eCCC-CC
Q 016547 228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-ED--G---LLNIW---DYEK-VG 297 (387)
Q Consensus 228 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~-~d--~---~i~vw---d~~~-~~ 297 (387)
+.|+.+...+.|.+|++.... .+.+.++..- +.|..+.++..|.|++ +-- .. . .+|+| .... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~Tv-~~V~~l~y~~~GDYlv-TlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE----CPLLCTFSTV-GRVLQLVYSEAGDYLV-TLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC----CceeEEEcch-hheeEEEeccccceEE-EEEeecCCccceEEEEEEEhhhhcccC
Confidence 555555777889999998322 5677777754 7889999999999865 442 21 2 45654 3321 11
Q ss_pred ceecc---C-----CCCCCC--CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 298 KKVEQ---G-----PRTTNY--PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 298 ~~~~~---~-----~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.+..- + +..... +.. +..+. -...+.+++..|-...|++++. +++.+|.+..
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qle-iiElP-l~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~ 164 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLE-IIELP-LSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKY 164 (215)
T ss_pred CcEEEEEcccccccCCCCccccceE-EEEec-CCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEE
Confidence 11110 0 000000 111 11122 2456788888887666776543 7999998873
No 442
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.58 E-value=12 Score=35.11 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=27.2
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 119 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 119 (387)
.++++.-+|.|+-++.+..||+|+++++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 4678888999999999999999999998643
No 443
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=5.9 Score=39.41 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 64 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~ 64 (387)
|-......++|.| ...++|.|+.+|.|+++-...-
T Consensus 33 G~~~~~~~~afD~-~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 33 GFPSTPSALAFDP-TQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCCcceeecc-ccceEEEEEecccEEEecccce
Confidence 4445667888888 8889999999999999976544
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=18 Score=36.41 Aligned_cols=167 Identities=11% Similarity=0.144 Sum_probs=93.3
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE--------ECCCCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA--------MCPTEP 100 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~--------~~~~~~ 100 (387)
.|...=..+-++|.-++.-+| .|..+.+|+.+++. ....+.+-.. .|..+. |.|.=+
T Consensus 76 ~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~------------e~~~~d~~sh-tIl~V~LvkPkpgvFv~~Iq 140 (1311)
T KOG1900|consen 76 SNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDN------------ELAEYDGLSH-TILKVGLVKPKPGVFVPEIQ 140 (1311)
T ss_pred cCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCC------------ccccccchhh-hheeeeeecCCCCcchhhhh
Confidence 344445566677766655555 57789999999862 2333333332 222332 223334
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
+++.-+.--.|.++-+.-......... ......+......|.|+....+
T Consensus 141 hlLvvaT~~ei~ilgV~~~~~~~~~~~-------------------------------f~~~~~i~~dg~~V~~I~~t~n 189 (1311)
T KOG1900|consen 141 HLLVVATPVEIVILGVSFDEFTGELSI-------------------------------FNTSFKISVDGVSVNCITYTEN 189 (1311)
T ss_pred eeEEecccceEEEEEEEeccccCcccc-------------------------------cccceeeecCCceEEEEEeccC
Confidence 555444455677765542211100000 0000222233456889997777
Q ss_pred CCeeEEEecCCCeEEEEEcc----CC------CC------------ceeEEee-ccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 181 SAQEFCSVGDDSCLILWDAR----VG------TS------------PVIKVEK-AHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~----~~------~~------------~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
| +.|++| .|| .+|.+. .+ .+ |....+. .+..+|..+.++. ..+.+.+-+..|
T Consensus 190 G-RIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~ 264 (1311)
T KOG1900|consen 190 G-RIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKG 264 (1311)
T ss_pred C-cEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCc
Confidence 7 656555 556 444431 11 00 1111223 5677999999998 888999999999
Q ss_pred eEEEEEecc
Q 016547 238 SVRMFDRRN 246 (387)
Q Consensus 238 ~i~~~d~~~ 246 (387)
.|..||+..
T Consensus 265 ~v~~Y~i~~ 273 (1311)
T KOG1900|consen 265 TVSAYDIGG 273 (1311)
T ss_pred eEEEEEccC
Confidence 999999986
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=91.19 E-value=8.9 Score=32.87 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
.+.+.++.+.| ++.+++++..-...+.++-... .-..........++++.+.++++.++.+. .|.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~~G~i~~s~~~gg~-------------tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~ 236 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSSRGNFYSTWEPGQT-------------AWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQ 236 (334)
T ss_pred cceEEEEEECC-CCeEEEEeCCceEEEEcCCCCC-------------eEEEeeCCCcccceeeeEcCCCCEEEEec-CCE
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC-------eEEEEEccCCCe
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT-------VEDVTFCPSSAQ 183 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~ 183 (387)
+.+=..+.+ ..+.....+ +..+.+.+++
T Consensus 237 ~~~~s~d~G-------------------------------------------~sW~~~~~~~~~~~~~l~~v~~~~~~-- 271 (334)
T PRK13684 237 IRFNDPDDL-------------------------------------------ESWSKPIIPEITNGYGYLDLAYRTPG-- 271 (334)
T ss_pred EEEccCCCC-------------------------------------------CccccccCCccccccceeeEEEcCCC--
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d 243 (387)
.+..++.+|.+..=.-.-...........-....+.+.+. +++..+..+..|.|.-++
T Consensus 272 ~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 272 EIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFL--DPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEe--CCCceEEECCCceEEEec
No 446
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.11 E-value=6.4 Score=31.10 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=72.5
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEE--ccCCCC---ceeEEeec----cCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWD--ARVGTS---PVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~---~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
-+.++|..+...+..+-+.+-.|.-|| ..++.. ..+..+.. .....-.++++. .|++.++.-..++|..+
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 367889877756777778888887787 444431 11111111 112234566676 89999999999999999
Q ss_pred EeccCCCCCCCCceEEeccccceEEEEEEcCCC-CeeEEEec
Q 016547 243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-SSVFGSSA 283 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ll~s~~ 283 (387)
|..+ ++.+.+++-....|++++|-..+ ..+.+++.
T Consensus 239 dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 239 DPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 9999 99999999888999999996543 22344443
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.93 E-value=2.9 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=26.8
Q ss_pred ceEEEEEEcCCC-----CeeEEEecCCCeEEEEeCCC
Q 016547 264 AAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 264 ~~i~~~~~~~~~-----~~ll~s~~~d~~i~vwd~~~ 295 (387)
..+..++|||.| +.+||+...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999953 66889999999999998765
No 448
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.84 E-value=10 Score=32.83 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=74.6
Q ss_pred EEccCCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547 176 TFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 252 (387)
+|.++|.++|+.+..||. +.+.|+.+++ +..+.... .......++| +.+.++-......|+-.|+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T------ 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDT------ 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCc------
Confidence 578888777777776665 5566777766 33443332 2233566778 666665555566888889888
Q ss_pred CCceEEeccccceEEEEEE--cCCCCeeEEEecC----------------------CCeEEEEeCCCCCceeccCCCCCC
Q 016547 253 GSPINKFEGHSAAVLCVQW--SPDKSSVFGSSAE----------------------DGLLNIWDYEKVGKKVEQGPRTTN 308 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~--~~~~~~ll~s~~~----------------------d~~i~vwd~~~~~~~~~~~~~~~~ 308 (387)
.+....+...+..+-...| +.++.. ++..-. .+.|.--|+.++
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG------------ 178 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG------------ 178 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------
T ss_pred CcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC------------
Confidence 4443444444555544555 334553 322110 111222222221
Q ss_pred CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce-EEEEecC
Q 016547 309 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT-LQIWRMS 359 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~-i~iw~~~ 359 (387)
....+..-..++.-+.|+|..+.+++-|- =|..|.. -|||-++
T Consensus 179 ----~~~~v~~~~~wlgH~~fsP~dp~li~fCH----EGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 179 ----ERKVVFEDTDWLGHVQFSPTDPTLIMFCH----EGPWDLVDQRIWTIN 222 (386)
T ss_dssp -----EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEE
T ss_pred ----ceeEEEecCccccCcccCCCCCCEEEEec----cCCcceeceEEEEEE
Confidence 12222233457788999999999888775 2444443 4777766
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=5.8 Score=35.35 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEcc---------CCCCceeE-E-------e-eccCCCeeEEEecCCC--CCe
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR---------VGTSPVIK-V-------E-KAHDADLHCVDWNPLD--DNL 229 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~-~-------~-~~~~~~i~~~~~~~~~--~~~ 229 (387)
-.|..+..++.| ..++-.+.+|.+.++=.+ .++..... . + ....-.+...+|+|.. ...
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 357888889998 567777777876665422 22211110 0 1 1112245678899944 578
Q ss_pred EEEeeCCCeEEEEEeccC
Q 016547 230 ILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 230 l~~~~~dg~i~~~d~~~~ 247 (387)
|+.-+.|+.||+||+...
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 888899999999999864
No 450
>PLN02153 epithiospecifier protein
Probab=90.27 E-value=11 Score=32.41 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=14.1
Q ss_pred CCcEEEEecCC-------CcEEEEeccCC
Q 016547 43 NTKIVATHTDS-------PDVLIWDVEAQ 64 (387)
Q Consensus 43 ~~~~l~t~~~d-------g~v~iwd~~~~ 64 (387)
++.+++.|+.+ ..+.+||+.+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 60 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH 60 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC
Confidence 45677777753 25777777665
No 451
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.23 E-value=8.8 Score=31.21 Aligned_cols=201 Identities=8% Similarity=-0.005 Sum_probs=105.0
Q ss_pred EEEeccCCCceEEEEECCCCCEEEEecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
..+..........+.|..+|.++-+.+.-| .|+.+|+.+++......
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~------------------------------- 85 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP------------------------------- 85 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-------------------------------
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-------------------------------
Confidence 334434444456788877888888877666 68889988764322111
Q ss_pred CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
+. ..----.++...+ .++.-.=.++...+||..+.+ .+..+. ..+.-..++. ++..|+.+....
T Consensus 86 -------l~-~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~--~~~~~~-y~~EGWGLt~---dg~~Li~SDGS~ 149 (264)
T PF05096_consen 86 -------LP-PRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK--KIGTFP-YPGEGWGLTS---DGKRLIMSDGSS 149 (264)
T ss_dssp --------T-TT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE--EEEEEE--SSS--EEEE---CSSCEEEE-SSS
T ss_pred -------CC-ccccceeEEEECC--EEEEEEecCCeEEEEccccce--EEEEEe-cCCcceEEEc---CCCEEEEECCcc
Confidence 11 1112233444433 445455578899999998766 344443 2345566663 677888888788
Q ss_pred eEEEEEeccCCCCCCCCceEEeccc--c---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 312 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 312 (387)
.++++|..+ .+...++.-. . ..++-+.|- +|. ++|-.-....|...|..++.-....... .
T Consensus 150 ~L~~~dP~~------f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~~iDls------~ 215 (264)
T PF05096_consen 150 RLYFLDPET------FKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVGWIDLS------G 215 (264)
T ss_dssp EEEEE-TTT-------SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEEEEE-H------H
T ss_pred ceEEECCcc------cceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhh------H
Confidence 899999877 4444444321 1 134455554 332 4555555555555555553211000000 0
Q ss_pred eeee------eccCCCCeeEEEEccCCCeEEEEec
Q 016547 313 LFFQ------HAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 313 ~~~~------~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
+... ......-.+.+|+.|..+.+++++-
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred hhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 0000 0011456899999999999998654
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.75 E-value=2 Score=23.12 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=20.0
Q ss_pred CCCCeeEEEecCCCeEEEEeCCCC
Q 016547 273 PDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 273 ~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
|++++++++...++.|.++|..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 578888888888999999999764
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.73 E-value=6.1 Score=33.79 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEE
Q 016547 91 FALAMCPTEPYVLSGGKDKSVVLWS 115 (387)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~i~vwd 115 (387)
+.|+|.|+|+.+++ ...|.|++++
T Consensus 5 ~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 5 RSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp EEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred eEEEEeCCCcEEEE-eCCceEEEEe
Confidence 68999999877665 5599999999
No 454
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.68 E-value=21 Score=34.75 Aligned_cols=112 Identities=6% Similarity=0.124 Sum_probs=66.5
Q ss_pred eeEEEecCCCCCeEEEee----------CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 217 LHCVDWNPLDDNLILTGS----------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 217 i~~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
+.+..|....+.++++|. ..|.|.+|......+ .+.+.+.+ -++.+.++..- +|+ ++|+ -+.
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---L~~v~e~~-v~Gav~aL~~f-ngk-llA~--In~ 848 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---LELVAETV-VKGAVYALVEF-NGK-LLAG--INQ 848 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---eeeeeeee-eccceeehhhh-CCe-EEEe--cCc
Confidence 445557762377888876 347888888776111 22333332 23455555432 455 4533 467
Q ss_pred eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.|++|+....+. +..-..+..++..+...-.++.+++ |.-=+++.+-...
T Consensus 849 ~vrLye~t~~~e---------------Lr~e~~~~~~~~aL~l~v~gdeI~V--------gDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 849 SVRLYEWTTERE---------------LRIECNISNPIIALDLQVKGDEIAV--------GDLMRSITLLQYK 898 (1096)
T ss_pred EEEEEEccccce---------------ehhhhcccCCeEEEEEEecCcEEEE--------eeccceEEEEEEe
Confidence 899999987522 3333556678888888888888774 3333566665554
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.30 E-value=11 Score=31.15 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=35.0
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec------CCCeEEEEeCCCC
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA------EDGLLNIWDYEKV 296 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~------~d~~i~vwd~~~~ 296 (387)
..|++||... .+-..--.+-.+.|+++.|..+.+ |+++|. ....+..||+...
T Consensus 16 ~~lC~yd~~~------~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDN------SQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCC------CEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC
Confidence 4589999876 222222223567899999985554 666664 4566888998874
No 456
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.99 E-value=25 Score=34.61 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=44.9
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc--CCCceEEEEECCCC------CEEEEecCCCeEEEE
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCPTE------PYVLSGGKDKSVVLW 114 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~~v~~~~~~~~~------~~l~s~~~d~~i~vw 114 (387)
+.+.++.+...|.+..+..+.. .....+..| -+..|.|+++.++. ++++.++.|+++++.
T Consensus 548 nr~qiVvalSngelvyfe~d~s------------gql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii 615 (1205)
T KOG1898|consen 548 NRRQIVVALSNGELVYFEGDVS------------GQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII 615 (1205)
T ss_pred cceEEEEEccCCeEEEEEeccC------------ccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence 3445666666666666665432 111222111 11247788888764 579999999999999
Q ss_pred EcCCCcCccccCCC
Q 016547 115 SIQDHITSSATDPA 128 (387)
Q Consensus 115 d~~~~~~~~~~~~~ 128 (387)
.+...........+
T Consensus 616 sL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 616 SLDPSDCLQPLSVQ 629 (1205)
T ss_pred EecCcceEEEcccc
Confidence 99866554444443
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.67 E-value=4.6 Score=37.42 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=27.1
Q ss_pred ceEEEEECC----CCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547 89 AEFALAMCP----TEPYVLSGGKDKSVVLWSIQDHITSSA 124 (387)
Q Consensus 89 ~v~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~~ 124 (387)
.+..++++. +..+|++.+.|+++|+||+.++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 455666666 678999999999999999999877433
No 458
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.18 E-value=17 Score=31.79 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=21.4
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
..+.+||..+.++............-.++... ++.+++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 35889998887753332222111112233332 5667777764
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.99 E-value=7.8 Score=27.66 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=47.4
Q ss_pred EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CCCEEEEecCCCeEE
Q 016547 38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVV 112 (387)
Q Consensus 38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~~~l~s~~~d~~i~ 112 (387)
+|.. ....|+.++.-|+|.|.+.......... ....+..+.-.. .|++|+-.+ +...|+.|+ ...+.
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LNin~--~italaaG~l~~~~~~D~LliGt-~t~ll 76 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGR----QDSDISFLNINQ--EITALAAGRLKPDDGRDCLLIGT-QTSLL 76 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCcccccccc----ccCceeEEECCC--ceEEEEEEecCCCCCcCEEEEec-cceEE
Confidence 4444 4457888888899999987765322211 224455555554 377775543 244677776 56899
Q ss_pred EEEcCCCc
Q 016547 113 LWSIQDHI 120 (387)
Q Consensus 113 vwd~~~~~ 120 (387)
.||+.+..
T Consensus 77 aYDV~~N~ 84 (136)
T PF14781_consen 77 AYDVENNS 84 (136)
T ss_pred EEEcccCc
Confidence 99998653
No 460
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=87.86 E-value=3.6 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
..+.|.++|++++|+++....+.|++|+...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3578999999999999999999999998764
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=25 Score=33.16 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=26.7
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
...+..+..||+.++ +|--...|.|.+-+++..
T Consensus 216 ~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRF-LALYTETGKIWVVSIDLS 248 (829)
T ss_pred CceEEEEEEcCCcce-EEEEecCCcEEEEecchh
Confidence 456788999999997 567788999999888764
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.54 E-value=29 Score=33.72 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=46.6
Q ss_pred CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC----Cc---eEEec------cccceEEEEEEcCCCCeeEEE
Q 016547 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG----SP---INKFE------GHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~---~~~~~------~~~~~i~~~~~~~~~~~ll~s 281 (387)
..|.+++... -+..++....||+|.++|..+++..... .. +.++. .+-..+..++|||.+-- ++.
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-LVQ 337 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-EEE
Confidence 4566777666 6778999999999999998885221101 11 11111 01123456889999884 557
Q ss_pred ecCCCeEE
Q 016547 282 SAEDGLLN 289 (387)
Q Consensus 282 ~~~d~~i~ 289 (387)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 77788866
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.53 E-value=2.9 Score=22.16 Aligned_cols=30 Identities=3% Similarity=0.170 Sum_probs=21.1
Q ss_pred CCCCeEEEEEccCCCeeEEEecCC--CeEEEE
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDD--SCLILW 197 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw 197 (387)
....-....|+|||..++.+...+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677889999997777777776 666665
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.49 E-value=18 Score=30.15 Aligned_cols=122 Identities=10% Similarity=0.118 Sum_probs=74.9
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCC-----CCceeEEeec-----cCCCeeEEEecCCCC------------C
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKA-----HDADLHCVDWNPLDD------------N 228 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~i~~~~~~~~~~------------~ 228 (387)
.-+.|+++|.+ .+.++....+...+||.... .+++...+.. .....+.+.|+. .. .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence 45889999998 67777778899999998721 2223333332 234677787775 22 2
Q ss_pred eEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccce-EEEEEEcC--CCCeeEEEecCCCeEEEEeCCC
Q 016547 229 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAA-VLCVQWSP--DKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 229 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.++.+++||+|.-|.-.-....- ......+. ..... -..+++.. .+.+|+++--..++|.|||-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 36778899999999854311000 01112222 11122 34555553 3567777777899999998664
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.36 E-value=3.6 Score=22.08 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=18.8
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCC
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGT 203 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~ 203 (387)
|++..++++...++.|.++|..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 4564566667678999999997766
No 466
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.07 E-value=21 Score=30.60 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=38.5
Q ss_pred ceEEeccccceEEEEEEcCC-------CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 255 PINKFEGHSAAVLCVQWSPD-------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~-------~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
++..+..| ..+..+.|-.. |. +|++.-..+.|....+....... .....+......+.++
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~-~~~~~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGD-LFVADYGGGRIWRLDLDEDGSVT-----------EEEEFLGGFGGRPRDV 311 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEE-----------EEEEECTTSSS-EEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCc-EEEecCCCCEEEEEeeecCCCcc-----------ceEEccccCCCCceEE
Confidence 44455544 55677777543 33 45566566788888876432211 1111123444579999
Q ss_pred EEccCCCeEE
Q 016547 328 HWNASDPWTV 337 (387)
Q Consensus 328 ~~~~~~~~l~ 337 (387)
++.|||..++
T Consensus 312 ~~~pDG~Lyv 321 (331)
T PF07995_consen 312 AQGPDGALYV 321 (331)
T ss_dssp EEETTSEEEE
T ss_pred EEcCCCeEEE
Confidence 9999987666
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.84 E-value=24 Score=31.09 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
..+.++.+.+++ . ++.++..|.+.... ..++ .........-...++.+.|.+ +++.+ +.+.+|.|.-|
T Consensus 328 ~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~-~~G~~G~il~~ 396 (398)
T PLN00033 328 FGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGF-VLGNDGVLLRY 396 (398)
T ss_pred cceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceE-EEeCCcEEEEe
Confidence 358889998876 5 44555677766654 2333 111111122345688999876 55444 44577876544
No 468
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.46 E-value=11 Score=26.91 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=64.9
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCC-----ceeEEeeccCCCeeEEEecCC----CCCeEEEeeCCCeEEEEEec
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~~~d~~ 245 (387)
-.|.... ..|+.++.-|.|.|++...... .....+..-...|++|+-.+. ....|+.|+ ...+..||..
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3455555 3577788889999998765431 111233345667888865442 355666665 5568899998
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcC---CCCeeEEEecCCCeEEEEeCCC
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
. ..-+...+ -...|+++.+-. ....+++.|+ +..|.-||...
T Consensus 82 ~------N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 82 N------NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred c------Cchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 7 33333222 345677776632 1222444444 77788777664
No 469
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.32 E-value=26 Score=30.93 Aligned_cols=149 Identities=13% Similarity=0.190 Sum_probs=76.5
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
...+..++++ .+++.+.....++-||--.... ..........++.+.+.+ ++.+++++ .+|.+.. ....
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W--~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~----- 309 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYW--QPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGT----- 309 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcce--EEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCC-----
Confidence 4455666776 5555554433333454322111 111223345688999988 77777665 5666543 2222
Q ss_pred CCC-----ceEEecc--ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547 252 VGS-----PINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324 (387)
Q Consensus 252 ~~~-----~~~~~~~--~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (387)
++ ....... -...+..+.|.+++. ++++ +.+|.+.... .. ++. .+.......-....
T Consensus 310 -G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~-G~~G~v~~s~-D~-G~t-----------W~~~~~~~~~~~~l 373 (398)
T PLN00033 310 -GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAA-GGSGILLRST-DG-GKS-----------WKRDKGADNIAANL 373 (398)
T ss_pred -CCcccccceeecccCCCCcceEEEEEcCCCc-EEEE-ECCCcEEEeC-CC-Ccc-----------eeEccccCCCCcce
Confidence 22 2222221 123588999998887 4544 4577665553 22 211 01111012223467
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
+.+.|.++++-++ .|.+|.|.-|
T Consensus 374 y~v~f~~~~~g~~---------~G~~G~il~~ 396 (398)
T PLN00033 374 YSVKFFDDKKGFV---------LGNDGVLLRY 396 (398)
T ss_pred eEEEEcCCCceEE---------EeCCcEEEEe
Confidence 8899877655444 3455776554
No 470
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.29 E-value=39 Score=33.01 Aligned_cols=218 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCcEEEEEec------CCCCcEEEEecCCCcEEEEeccCCCC---cccccCCCCCCCeEEEeccCCC--ceEEEEECC-C
Q 016547 31 PGEVNRIREL------PQNTKIVATHTDSPDVLIWDVEAQPN---RHAVLGATNSRPDLILTGHQDN--AEFALAMCP-T 98 (387)
Q Consensus 31 ~~~v~~i~~~------~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~-~ 98 (387)
..+|..|+|. ....++|++=... .+.|+...-.+. .......-...++..+..+..+ +...++|+| +
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~-st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTET-STTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCC-EEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe------
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV------ 172 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------ 172 (387)
.+.||.....|.-.||++........... .....+.+.+
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~-----------------------------------~~~~~~~gsi~~d~~e 202 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNL-----------------------------------RLSRNISGSIIFDPEE 202 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcce-----------------------------------eeccCCCccccCCCcc
Q ss_pred E----EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc--
Q 016547 173 E----DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-- 246 (387)
Q Consensus 173 ~----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 246 (387)
. .+.|.++. ..|+.++.. .+.++|+++...............|..+.-+|.+..+++.-+. ..|.+.|+..
T Consensus 203 ~s~w~rI~W~~~~-~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~ 279 (765)
T PF10214_consen 203 LSNWKRILWVSDS-NRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSS 279 (765)
T ss_pred cCcceeeEecCCC-CEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCCC
Q ss_pred -CCCCCCCCceEEeccc-------cceEEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547 247 -LTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 293 (387)
Q Consensus 247 -~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~ 293 (387)
. ...+.+++ | .-.+.......+.-.+++.......|.+|.+
T Consensus 280 ~~-----~~~llSwk-H~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 280 EK-----LTRLLSWK-HFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred CC-----eeeeeecc-cccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE
No 471
>PLN02193 nitrile-specifier protein
Probab=84.64 E-value=31 Score=31.34 Aligned_cols=62 Identities=6% Similarity=0.102 Sum_probs=33.6
Q ss_pred eeEEEecCC----CeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCC--------------CeEEEE
Q 016547 183 QEFCSVGDD----SCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMF 242 (387)
Q Consensus 183 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d--------------g~i~~~ 242 (387)
++++.++.+ ..+.+||+.+.++..+.... .......+++. - ++++++.|+.. +.+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-V-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-E-CCEEEEECCccCCccccccCccceeccEEEE
Confidence 566666654 45889999887643322210 11111122222 2 56778887753 246778
Q ss_pred Eecc
Q 016547 243 DRRN 246 (387)
Q Consensus 243 d~~~ 246 (387)
|+.+
T Consensus 408 D~~t 411 (470)
T PLN02193 408 DTET 411 (470)
T ss_pred EcCc
Confidence 8776
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.09 E-value=26 Score=29.97 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=86.5
Q ss_pred CeEEEEEccCCCeeEEEecCC------CeEEEEEccCCCCceeE-------------EeeccCCCeeEEEecCCCCCeEE
Q 016547 171 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIK-------------VEKAHDADLHCVDWNPLDDNLIL 231 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~l~ 231 (387)
..-+|++.+++ .++++.-.+ ..|..++.. ++..... .-.......-+|+++| +++.|+
T Consensus 86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF 162 (326)
T ss_pred ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence 34567776666 667776666 778888866 3321111 1112345678999999 888666
Q ss_pred EeeC-----CC---------eEEEEEeccCCCC-CCCCceEEecc-----ccceEEEEEEcCCCCeeEEEec----CCCe
Q 016547 232 TGSA-----DN---------SVRMFDRRNLTSN-GVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSA----EDGL 287 (387)
Q Consensus 232 ~~~~-----dg---------~i~~~d~~~~~~~-~~~~~~~~~~~-----~~~~i~~~~~~~~~~~ll~s~~----~d~~ 287 (387)
++.. |+ .++++........ ...+....+.. ....|..+.+-++++.++.==+ ....
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~ 242 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY 242 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence 6543 22 1556555432110 00112222222 3567889999999985432222 2345
Q ss_pred EEEEeCCCCCc--eecc--CC--CCCCCCceeeeeecc---CCCCeeEEEEcc--CCCeEEEEecCC
Q 016547 288 LNIWDYEKVGK--KVEQ--GP--RTTNYPAGLFFQHAG---HRDKVVDFHWNA--SDPWTVVSVSDD 343 (387)
Q Consensus 288 i~vwd~~~~~~--~~~~--~~--~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~s~s~d 343 (387)
++|+.+.-... .... .. ........++..+.. ....+-.|+|.| ++...++..|||
T Consensus 243 ~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDn 309 (326)
T PF13449_consen 243 KRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDN 309 (326)
T ss_pred EEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECC
Confidence 66665543211 1000 00 000011122222211 256788999977 677766666665
No 473
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.68 E-value=31 Score=30.58 Aligned_cols=161 Identities=11% Similarity=0.126 Sum_probs=91.7
Q ss_pred CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CCCEEEEecCCCeEEEEE
Q 016547 41 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVVLWS 115 (387)
Q Consensus 41 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~~~l~s~~~d~~i~vwd 115 (387)
+.+.+.+++|+.+|.++||+........ ....++.....+|..+..-+ +...||. -.-+.+.+|.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~---------~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~ 103 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQP---------EDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYS 103 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCC---------ccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEE
Confidence 3466799999999999999985542111 12233333344677776532 2234444 3457888888
Q ss_pred cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC--CCCeEEEEEccCC----CeeEEEec
Q 016547 116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--EDTVEDVTFCPSS----AQEFCSVG 189 (387)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~----~~~l~~~~ 189 (387)
+........ .....+. .....| ......+++-|-| ..++.+=+
T Consensus 104 v~~~~g~~~------------------------------~g~~~~L-~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS 152 (418)
T PF14727_consen 104 VSLVDGTVE------------------------------HGNQYQL-ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQS 152 (418)
T ss_pred EEecCCCcc------------------------------cCcEEEE-EEEEEEecccceeEEEEEECCCCCCceEEEEEe
Confidence 732111000 0000111 111222 1223344443332 36788889
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
.||.+.+++-+... ....+. ..--...+.|.+ ..+.|++++.+..+.-|....
T Consensus 153 ~DG~L~~feqe~~~--f~~~lp-~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 153 MDGSLSFFEQESFA--FSRFLP-DFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred cCceEEEEeCCcEE--EEEEcC-CCCCCcCeEEee-cCCEEEEecCceeEEEecHHH
Confidence 99999999866543 222222 233344678888 888999999999999887654
No 474
>PLN02153 epithiospecifier protein
Probab=82.94 E-value=30 Score=29.80 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=27.6
Q ss_pred CeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCC--------------CeEEEEEecc
Q 016547 192 SCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMFDRRN 246 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d--------------g~i~~~d~~~ 246 (387)
..+.+||+.+.++..+.... .......++. .. ++.+++.|+.. +.+..||..+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeE-EE-CCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 45888998887743322110 0011112222 22 56777887752 2566777765
No 475
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.67 E-value=28 Score=31.11 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
..|.+++..+ ..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999 779999999999999999985
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.46 E-value=47 Score=31.79 Aligned_cols=96 Identities=15% Similarity=0.364 Sum_probs=49.4
Q ss_pred EEEEEccCCCeeEEEecCCC-----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 173 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
..+.|-|+| ..+++-..|| .|.++....-+.-....-.+....+..++|+- ....++. ...+.+.+|-..+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav-~~~n~~~lwttkN- 325 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAV-AEGNLLKLWTTKN- 325 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHH-hhcceEEEEEccc-
Confidence 347899999 6788766554 24444422111000001112233456677765 4444443 4567799998776
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCCe
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 277 (387)
..-.....-.-..+.-+.|+|...+
T Consensus 326 -----yhWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 326 -----YHWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -----eEEEEEEeecCCCcceeeeccccCc
Confidence 3322222222234566788886543
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.03 E-value=7.2 Score=36.17 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=40.1
Q ss_pred eeEEEecCCCeEEEEEccC---CCCceeEE-ee--------------------ccCCCeeEEEecC---CCCCeEEEeeC
Q 016547 183 QEFCSVGDDSCLILWDARV---GTSPVIKV-EK--------------------AHDADLHCVDWNP---LDDNLILTGSA 235 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~---~~~~~~~~-~~--------------------~~~~~i~~~~~~~---~~~~~l~~~~~ 235 (387)
..++.+..||.+....... ........ +. ........+++++ .+..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 5677788888888887664 11000000 00 0112334444433 15678999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEe
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
|+.+|+||+.+ ++++.+.
T Consensus 239 D~~LRiW~l~t------~~~~~~~ 256 (547)
T PF11715_consen 239 DHTLRIWSLET------GQCLATI 256 (547)
T ss_dssp TSEEEEEETTT------TCEEEEE
T ss_pred CCeEEEEECCC------CeEEEEe
Confidence 99999999998 6665543
No 478
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=81.84 E-value=28 Score=34.80 Aligned_cols=123 Identities=11% Similarity=0.129 Sum_probs=67.7
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
++.......+|+|.+++-. .| +|++|. ...|.||+++..... ..+..+.- .++......-+++
T Consensus 1088 lKel~~eE~KGtVsavceV--~G-~l~~~~-GqKI~v~~l~r~~~l---------igVaFiD~----~~yv~s~~~vknl 1150 (1366)
T KOG1896|consen 1088 LKELYIEEQKGTVSAVCEV--RG-HLLSSQ-GQKIIVRKLDRDSEL---------IGVAFIDL----PLYVHSMKVVKNL 1150 (1366)
T ss_pred eeeeehhhcccceEEEEEe--cc-EEEEcc-CcEEEEEEeccCCcc---------eeeEEecc----ceeEEehhhhhhh
Confidence 3444444578999999743 44 455543 347999999655211 11111111 1223333334566
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEcc
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCP 179 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~ 179 (387)
|+.|.--+.|.+..++..... +..+. ...-.+.++.|.-
T Consensus 1151 Il~gDV~ksisfl~fqeep~r---------------------------------------lsL~srd~~~l~v~s~EFLV 1191 (1366)
T KOG1896|consen 1151 ILAGDVMKSISFLGFQEEPYR---------------------------------------LSLLSRDFEPLNVYSTEFLV 1191 (1366)
T ss_pred eehhhhhhceEEEEEccCceE---------------------------------------EEEeecCCchhhceeeeeEE
Confidence 777766666776666532111 01111 1233578888877
Q ss_pred CCCe-eEEEecCCCeEEEEEcc
Q 016547 180 SSAQ-EFCSVGDDSCLILWDAR 200 (387)
Q Consensus 180 ~~~~-~l~~~~~dg~i~iwd~~ 200 (387)
+|.+ .++++..++.|++|-..
T Consensus 1192 dg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1192 DGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred cCCeeEEEEEcCCCcEEEEEeC
Confidence 7654 46777889998887543
No 479
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=80.48 E-value=34 Score=28.87 Aligned_cols=117 Identities=8% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 305 (387)
Q Consensus 226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 305 (387)
++++|+.|+++| +.+.++.. .......-.+...|+++...+..+.|++-++....++++++............
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~------~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~ 84 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISD------QPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS 84 (302)
T ss_pred CCcEEEEEeCCc-eEEEEccc------CCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Q ss_pred CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 306 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
.............+|......+........+.+.++.. .+|.++
T Consensus 85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~-------~~i~l~ 128 (302)
T smart00036 85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQ-------SSVVLL 128 (302)
T ss_pred ccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcC-------CeEEEE
No 480
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.35 E-value=54 Score=31.12 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=35.4
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 224 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (387)
..+..+..+|+. .+++--..+|.|.+-+.+..+.-+......| .+...++|.-
T Consensus 217 ~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcg 269 (829)
T KOG2280|consen 217 SSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCG 269 (829)
T ss_pred ceEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeec
Confidence 567788999988 7888888899999888776663222222223 2334677764
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.34 E-value=44 Score=30.05 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=38.3
Q ss_pred ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEEecC
Q 016547 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNP 224 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~ 224 (387)
+...-..-+.|+|.|++ .+|++--..|.|++++...........+ .........|+++|
T Consensus 25 va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred EECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34445667899999998 6666554469999998655432111111 11356788999998
No 482
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.07 E-value=50 Score=30.55 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=43.3
Q ss_pred EEEecCCCCCeEEEeeCC-----C-----------eEEEEEeccCCCCCCCCceEEeccccc---------eEEEEEEcC
Q 016547 219 CVDWNPLDDNLILTGSAD-----N-----------SVRMFDRRNLTSNGVGSPINKFEGHSA---------AVLCVQWSP 273 (387)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d-----g-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~ 273 (387)
.+.++| ...++..+..+ + .|.-.|+++ ++..-.++.... ...-+.+..
T Consensus 238 ~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T------G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~ 310 (527)
T TIGR03075 238 TGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT------GKIKWHYQTTPHDEWDYDGVNEMILFDLKK 310 (527)
T ss_pred ceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc------CCEEEeeeCCCCCCccccCCCCcEEEEecc
Confidence 346777 55556555422 2 456667776 666655553211 111222334
Q ss_pred CCC--eeEEEecCCCeEEEEeCCCCCc
Q 016547 274 DKS--SVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 274 ~~~--~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
+|+ .+++.+..+|.+.+.|-++++.
T Consensus 311 ~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 311 DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 555 4678999999999999988543
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.51 E-value=3.9 Score=38.09 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 293 (387)
Q Consensus 214 ~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~ 293 (387)
...++++.-+| .++-++.++.||.|++|+..... ...+.+ ...+-..+.|...| + ++...|..+.-|.-
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~----qski~~---~~~p~~nlv~tnhg--l-~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR----QSKICE---EAKPKENLVFTNHG--L-VTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccc----hhhhhh---hcCCccceeeeccc--e-EEEeccchhheeec
Confidence 34567888889 99999999999999999987521 111211 22333456665555 3 35555666666654
Q ss_pred C
Q 016547 294 E 294 (387)
Q Consensus 294 ~ 294 (387)
.
T Consensus 83 d 83 (1636)
T KOG3616|consen 83 D 83 (1636)
T ss_pred c
Confidence 3
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.04 E-value=33 Score=27.79 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred EEEEEccCCCCceeEEee-ccCCCeeEEEecCCCCCeEEEeeC-C--CeEEEEEeccCCCCCCCCce-EEeccccceEEE
Q 016547 194 LILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA-D--NSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLC 268 (387)
Q Consensus 194 i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-d--g~i~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~ 268 (387)
-.+||+.+.+. +.+. ....-..+-.+.+ +|+++.+|+. + ..+++++............. ..+. ....--.
T Consensus 48 s~~yD~~tn~~---rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTF---RPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPT 122 (243)
T ss_pred EEEEecCCCcE---EeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCcccc
Confidence 45788887762 2221 1222233345677 8999999876 2 35788775431100001111 1111 2233445
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEe
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
+.--|||+.+++.|.......+|.
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccC
Confidence 556689996554444433344443
No 485
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=78.12 E-value=16 Score=23.83 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=25.4
Q ss_pred CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...+.+.++|+++++.++.... +.|++|+..
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~-------~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLA-------HSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccC-------CeEEEEEec
Confidence 3558899999999999866554 999999876
No 486
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=77.88 E-value=39 Score=28.05 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=93.9
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
-.+-+..+.++. +++..+..+.-++|.|+.+... +...-.-..++ ..-.|.-.|++...+..|.
T Consensus 85 ~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~s-----------P~~~~~lnt~g--yaygv~vsGn~aYVadldd 148 (370)
T COG5276 85 ARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDS-----------PTLIGFLNTDG--YAYGVYVSGNYAYVADLDD 148 (370)
T ss_pred hhhhhheeEecc---cEEEEEcCCCceEEEeccCCCC-----------cceeccccCCc--eEEEEEecCCEEEEeeccC
Confidence 345556666643 4566666666799999998742 22111111211 2334444788888888677
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
-+.+.|+.++... .....+......-..++.+. ++...+.
T Consensus 149 gfLivdvsdpssP-------------------------------------~lagrya~~~~d~~~v~ISG---n~AYvA~ 188 (370)
T COG5276 149 GFLIVDVSDPSSP-------------------------------------QLAGRYALPGGDTHDVAISG---NYAYVAW 188 (370)
T ss_pred cEEEEECCCCCCc-------------------------------------eeeeeeccCCCCceeEEEec---CeEEEEE
Confidence 7778898764321 11122222233335666663 4566677
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
.|+-+.+-|+.....|...........+.++..++ +..+++.. ..| +.+-|...
T Consensus 189 ~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~vvy-~eg-vlivd~s~ 242 (370)
T COG5276 189 RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYLVVY-DEG-VLIVDVSG 242 (370)
T ss_pred eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEEEEc-ccc-eEEEecCC
Confidence 89999999999888766655555555788888887 55554443 333 55556655
No 487
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.35 E-value=6.7 Score=19.00 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEe
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWD 60 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd 60 (387)
..|.+++..+ .+++.+.+.+.+++|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3578888644 6888888889999874
No 488
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.26 E-value=33 Score=26.86 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=24.6
Q ss_pred eeeeeecCCCcEE--EEEecCCCCcEEEEecC--CCcEEEEeccCCC
Q 016547 23 KKHKTIIHPGEVN--RIRELPQNTKIVATHTD--SPDVLIWDVEAQP 65 (387)
Q Consensus 23 ~~~~~~~h~~~v~--~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~ 65 (387)
+..+...|...-. .+.+. ++.++.+.+. ...|++||+.+++
T Consensus 35 evi~~yphDs~sfTQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq 79 (262)
T COG3823 35 EVIRTYPHDSTSFTQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQ 79 (262)
T ss_pred EEEEeccCchhhhhcceeee--CCEEEEeccccccceeEEEeccCce
Confidence 3455566655432 23332 4566666554 3479999999883
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.41 E-value=58 Score=29.31 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=37.6
Q ss_pred cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe----c-cccceEEEEEEcCCC
Q 016547 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----E-GHSAAVLCVQWSPDK 275 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----~-~~~~~i~~~~~~~~~ 275 (387)
.-.....|+|.| ++++|++--..|.|++++..... ...+..+ . .-+.....|+++|+-
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~----~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGE----VKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCc----eeeeecCCceeccCCCCceeeEEECCCc
Confidence 345678999999 88877766557999998765421 1111111 1 125678899999874
No 490
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=76.32 E-value=51 Score=28.62 Aligned_cols=155 Identities=11% Similarity=0.011 Sum_probs=84.0
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec--CC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceE----
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPIN---- 257 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---- 257 (387)
+.-+.....+.+|...+.+......+......+..+.|- |. +..+..++-.++..+++-... .... .+.+.
T Consensus 222 v~d~lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~-~tws-~~~visvp~ 299 (476)
T KOG0918|consen 222 VEDGLYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSD-DTWS-AEVVISVPP 299 (476)
T ss_pred hhccceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccc-cccc-eeEEEecCc
Confidence 333344567888888777732222333333445566652 31 223444444566677765443 1100 01111
Q ss_pred ------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC------------------CCCCce-
Q 016547 258 ------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT------------------TNYPAG- 312 (387)
Q Consensus 258 ------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~------------------~~~~~~- 312 (387)
.+....+-|+.+-.|-|.++|.+++-..|.|+-||+..+..+.-..+.. ...++.
T Consensus 300 ~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea 379 (476)
T KOG0918|consen 300 LKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEA 379 (476)
T ss_pred cccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCcc
Confidence 1122345688999999999999999999999999998865443221100 001111
Q ss_pred eeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 313 LFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
+...-..-.+...-+..|-||.+|.++.|
T Consensus 380 ~~vKGrkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 380 LYVKGRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred ceecCccccCCceeEEeccCCcEEEEEch
Confidence 11111112344556778888999988765
No 491
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.16 E-value=79 Score=31.12 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=41.2
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCC-CCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN-SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI 120 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 120 (387)
.++.|..|+.||.+.+|.+.............. ......+. ..+|..+...+.-.+++.-+ |+.|.++++.+..
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~---kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFS---KKPINKLLVCASLELLLILS-DSQIAVHKLPELE 99 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhc---cchhHHHhhcchhcchheec-CCcceeeecCccc
Confidence 567899999999999999887633222111000 00011111 22455555555444444433 6778888876543
No 492
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.96 E-value=49 Score=28.20 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=9.5
Q ss_pred CeEEEEEccCCCC
Q 016547 192 SCLILWDARVGTS 204 (387)
Q Consensus 192 g~i~iwd~~~~~~ 204 (387)
..+.+||+.+.++
T Consensus 271 ~~v~~yd~~~~~W 283 (323)
T TIGR03548 271 RKILIYNVRTGKW 283 (323)
T ss_pred ceEEEEECCCCee
Confidence 3588888887764
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.31 E-value=56 Score=28.54 Aligned_cols=196 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-------EEEEecCC---C
Q 016547 40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-------YVLSGGKD---K 109 (387)
Q Consensus 40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-------~l~s~~~d---~ 109 (387)
.| ...+++....++-+.+||++.. .+.....+..+.+..-.+=. .+++..++ .
T Consensus 65 dp-~kSlIigTdK~~GL~VYdL~Gk----------------~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n 127 (381)
T PF02333_consen 65 DP-AKSLIIGTDKKGGLYVYDLDGK----------------ELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRN 127 (381)
T ss_dssp -G-GG-EEEEEETTTEEEEEETTS-----------------EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-
T ss_pred Cc-ccceEEEEeCCCCEEEEcCCCc----------------EEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCC
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe---------EEEEEcc-
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV---------EDVTFCP- 179 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------~~~~~~~- 179 (387)
+|++|.+. .....+..+.....++ .|+--++
T Consensus 128 ~l~~f~id---------------------------------------~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~ 168 (381)
T PF02333_consen 128 SLRLFRID---------------------------------------PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPS 168 (381)
T ss_dssp EEEEEEEE---------------------------------------TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TT
T ss_pred eEEEEEec---------------------------------------CCCCcceEcCCCCcccccccccceeeEEeecCC
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCC-----ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
++..+++....+|.+.-|.+..... ..++.+.... .+..+..+. ....|..+-.+.-|.-|+.+...... ..
T Consensus 169 ~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~-~~ 245 (381)
T PF02333_consen 169 TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGND-RT 245 (381)
T ss_dssp T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S---E
T ss_pred CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEec-ccCCEEEecCccEEEEEecCCCCCCc-ce
Q ss_pred ceEEecc--ccceEEEEEEcCCCC---eeEEEecCCCeEEEEeCC
Q 016547 255 PINKFEG--HSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 255 ~~~~~~~--~~~~i~~~~~~~~~~---~ll~s~~~d~~i~vwd~~ 294 (387)
.+....+ ....|..|++-.... ||++|.-.++...||+.+
T Consensus 246 ~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 246 LVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred eeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
No 494
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=75.22 E-value=48 Score=27.76 Aligned_cols=214 Identities=10% Similarity=0.123 Sum_probs=108.6
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec----cCCCceEEEEECCCCC--------
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG----HQDNAEFALAMCPTEP-------- 100 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~~v~~~~~~~~~~-------- 100 (387)
.-+.|+++| .+.+-++....+...+||.......- ........+.. +.....+.+.|+....
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g-----~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPL-----VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccC-----CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 357899999 66777777778899999987221000 00011222221 1111345666664333
Q ss_pred ----EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCC-eEE
Q 016547 101 ----YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDT-VED 174 (387)
Q Consensus 101 ----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-v~~ 174 (387)
.++.+++||+|.-|.-.-...... .....+. ..... -..
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~-----------------------------------~~~~~~d~s~~gavYkG 142 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMT-----------------------------------RAEIVVDASQQGNVYKG 142 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCccccc-----------------------------------ccEEEEccCCCcceeee
Confidence 356778899999998532111000 0000111 00111 233
Q ss_pred EEEcc--CCCeeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCC-----------eeEEEecCCCCCeEEEeeCC
Q 016547 175 VTFCP--SSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDAD-----------LHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 175 ~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~-----------i~~~~~~~~~~~~l~~~~~d 236 (387)
+++.. .+..+.++--..++|.++|-.-.+......+ .....+ |+-..-.+ +...=+.|..-
T Consensus 143 LAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~ 221 (336)
T TIGR03118 143 LAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGL 221 (336)
T ss_pred eEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCc
Confidence 44442 2434555556788999998543321100000 000011 11111122 22222334445
Q ss_pred CeEEEEEeccCCCCCCCCceEEecc--ccceEEEEEEcC------CCCeeEEEecCCCeEEEEeCCCC
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSP------DKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~------~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
|.|-+||+. +..++.+.. .=.....|+..| .+. ||+.--.||+|..||..+.
T Consensus 222 G~VdvFd~~-------G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 222 GYVNVFTLN-------GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred ceEEEEcCC-------CcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCC
Confidence 789999988 778887742 112345666654 244 6656667999999998875
No 495
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.21 E-value=51 Score=28.07 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=34.4
Q ss_pred eeEEEecC-----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe----EEEEEecc
Q 016547 183 QEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS----VRMFDRRN 246 (387)
Q Consensus 183 ~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~----i~~~d~~~ 246 (387)
.+++.|+. ...+..||+.+.++..+..+.... .....+..- ++.+.+.|+.++. +..||..+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCC
Confidence 66677664 246888998887753332222111 111222222 6778888876643 45778775
No 496
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.14 E-value=21 Score=23.54 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEEEEccCCCeeEEEecCC-----------------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547 173 EDVTFCPSSAQEFCSVGDD-----------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 233 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~d-----------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (387)
.++++.++++...+|-+.. |.+.-||..+++ ...+...-.-.+.|++++ ++..++.+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~-d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSP-DESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-T-TSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcC-CCCEEEEE
No 497
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=74.80 E-value=53 Score=28.09 Aligned_cols=84 Identities=8% Similarity=0.124 Sum_probs=44.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCc------EEEEeccCCCCcccccCCCCCCCeEEEeccCCC-------ceEEEEEC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPD------VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-------AEFALAMC 96 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------~v~~~~~~ 96 (387)
.-+.+..|.+.+.++.++ +.+++|. +...++........- ........+....+. -.-+|++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGG---VTILDMIPLRDPDGQPFPKNGLDPEGIAVP 93 (326)
T ss_pred ccCcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccc---eEeccceeccCCCCCcCCcCCCChhHeEEe
Confidence 357789999997455544 5567777 666665541110000 000011111111110 12367777
Q ss_pred CCCCEEEEecCC------CeEEEEEcC
Q 016547 97 PTEPYVLSGGKD------KSVVLWSIQ 117 (387)
Q Consensus 97 ~~~~~l~s~~~d------~~i~vwd~~ 117 (387)
++|.++++.-.+ ..|.-++..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~ 120 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD 120 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC
Confidence 788888877666 677777765
No 498
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=73.71 E-value=89 Score=30.13 Aligned_cols=75 Identities=25% Similarity=0.433 Sum_probs=44.0
Q ss_pred CCeeEEEecCCCCCeEEEeeCCC-----eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547 215 ADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~ 289 (387)
+.-..+.|-| .|..+++-..|| .|.++....... +..-.. .+.+..+..++|+-... +++ ....+.++
T Consensus 247 g~e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrH---Gef~lr-~~~dEk~~~~~wn~~s~-vla-v~~~n~~~ 319 (1243)
T COG5290 247 GMEHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRH---GEFDLR-VGCDEKAFLENWNLLST-VLA-VAEGNLLK 319 (1243)
T ss_pred cchhcccccc-CCceeeeeccCCCCCcceEEEEccCCccc---CCcccc-CCchhhhhhhhhhHHHH-HHH-HhhcceEE
Confidence 3345688999 999999877665 355554332110 111111 12344566778876665 343 34567899
Q ss_pred EEeCCCC
Q 016547 290 IWDYEKV 296 (387)
Q Consensus 290 vwd~~~~ 296 (387)
+|-..+.
T Consensus 320 lwttkNy 326 (1243)
T COG5290 320 LWTTKNY 326 (1243)
T ss_pred EEEccce
Confidence 9987763
No 499
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.51 E-value=8.9 Score=18.57 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=15.0
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEE
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIW 291 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vw 291 (387)
...++++++|. ++++-+...+|++|
T Consensus 4 P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35667776666 45565666666554
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=71.42 E-value=53 Score=26.61 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=37.3
Q ss_pred CeEEEEEccCCCeeEEEecCC-CeEEEEEccCCCC-ceeEEeec------cCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 171 TVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTS-PVIKVEKA------HDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~-~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
.--++...||| ..++.|+.. ....+|....... .....+.. ...---.+...| +|++|+.+..+.. ||
T Consensus 119 WYpT~~~L~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s~--i~ 194 (243)
T PF07250_consen 119 WYPTATTLPDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGSI--IY 194 (243)
T ss_pred ccccceECCCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCcE--EE
Confidence 33455667888 566666554 3455555432211 11111111 111122456678 8999998887654 46
Q ss_pred Eecc
Q 016547 243 DRRN 246 (387)
Q Consensus 243 d~~~ 246 (387)
|..+
T Consensus 195 d~~~ 198 (243)
T PF07250_consen 195 DYKT 198 (243)
T ss_pred eCCC
Confidence 7776
Done!