Query 016547
Match_columns 387
No_of_seqs 576 out of 1351
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 15:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6.7E-49 2.3E-53 342.7 35.1 270 24-387 101-390 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 2.4E-48 8.3E-53 325.8 34.3 271 25-387 7-280 (304)
3 3ow8_A WD repeat-containing pr 100.0 3.2E-48 1.1E-52 327.1 31.9 271 26-387 27-300 (321)
4 1got_B GT-beta; complex (GTP-b 100.0 5.7E-47 1.9E-51 322.6 36.1 277 22-387 46-322 (340)
5 4gqb_B Methylosome protein 50; 100.0 4.7E-47 1.6E-51 322.1 34.9 255 26-360 77-331 (344)
6 2pbi_B Guanine nucleotide-bind 100.0 8.3E-46 2.9E-50 316.8 36.6 280 23-387 56-336 (354)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-46 2.3E-50 316.5 33.4 300 24-387 8-313 (345)
8 4gqb_B Methylosome protein 50; 100.0 3.2E-46 1.1E-50 317.0 29.9 281 28-387 27-309 (344)
9 3iz6_a 40S ribosomal protein R 100.0 3.6E-46 1.2E-50 322.4 29.9 288 23-387 58-354 (380)
10 4g56_B MGC81050 protein; prote 100.0 1.3E-45 4.6E-50 315.7 30.1 275 28-387 39-321 (357)
11 4ery_A WD repeat-containing pr 100.0 2.7E-44 9.3E-49 302.8 36.0 272 22-387 14-289 (312)
12 4g56_B MGC81050 protein; prote 100.0 1E-44 3.4E-49 310.3 31.3 255 25-360 88-343 (357)
13 3ow8_A WD repeat-containing pr 100.0 2.8E-44 9.7E-49 302.9 33.5 246 26-359 75-320 (321)
14 1erj_A Transcriptional repress 100.0 7.5E-44 2.6E-48 309.3 34.8 282 24-387 57-362 (393)
15 2pm7_B Protein transport prote 100.0 1.4E-43 4.7E-48 295.9 34.6 258 26-359 4-284 (297)
16 1vyh_C Platelet-activating fac 100.0 2.4E-44 8.2E-49 313.9 31.2 247 25-359 144-410 (410)
17 3frx_A Guanine nucleotide-bind 100.0 2.2E-43 7.5E-48 297.6 35.3 274 24-387 10-296 (319)
18 2xzm_R RACK1; ribosome, transl 100.0 2.3E-43 7.7E-48 300.9 32.9 285 23-387 13-319 (343)
19 2hes_X YDR267CP; beta-propelle 100.0 2.7E-43 9.2E-48 298.5 32.8 287 25-387 8-305 (330)
20 1nr0_A Actin interacting prote 100.0 1.9E-43 6.5E-48 323.8 33.0 318 29-387 16-377 (611)
21 1nr0_A Actin interacting prote 100.0 1.7E-43 6E-48 324.0 30.2 311 25-387 184-591 (611)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.2E-43 3.2E-47 297.1 32.1 267 28-360 58-335 (345)
23 1got_B GT-beta; complex (GTP-b 100.0 9.9E-42 3.4E-46 290.3 33.1 248 25-357 91-340 (340)
24 2ymu_A WD-40 repeat protein; u 100.0 2E-41 6.9E-46 309.5 35.4 262 26-387 298-559 (577)
25 2hes_X YDR267CP; beta-propelle 100.0 1.3E-41 4.3E-46 288.3 31.6 263 30-359 57-327 (330)
26 4aow_A Guanine nucleotide-bind 100.0 7.5E-42 2.6E-46 291.6 30.4 299 25-359 32-336 (340)
27 2ynn_A Coatomer subunit beta'; 100.0 5.6E-41 1.9E-45 281.1 33.8 251 25-359 49-301 (304)
28 3bg1_A Protein SEC13 homolog; 100.0 1.7E-42 6E-47 291.7 24.3 261 26-359 8-292 (316)
29 3frx_A Guanine nucleotide-bind 100.0 6.1E-41 2.1E-45 282.7 32.5 254 24-359 58-316 (319)
30 2ymu_A WD-40 repeat protein; u 100.0 6.2E-41 2.1E-45 306.2 34.4 268 23-387 8-313 (577)
31 2pbi_B Guanine nucleotide-bind 100.0 2E-40 6.8E-45 283.5 34.7 252 25-357 100-354 (354)
32 3zwl_B Eukaryotic translation 100.0 1.2E-39 4.2E-44 280.9 35.9 284 19-387 20-325 (369)
33 1sq9_A Antiviral protein SKI8; 100.0 1.2E-40 4.3E-45 290.2 30.0 279 25-387 10-364 (397)
34 1gxr_A ESG1, transducin-like e 100.0 1.6E-39 5.3E-44 276.8 35.5 273 22-387 42-316 (337)
35 4e54_B DNA damage-binding prot 100.0 3.8E-41 1.3E-45 296.4 26.3 290 26-387 114-410 (435)
36 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-40 2.9E-44 275.6 32.6 266 23-387 10-276 (313)
37 2xzm_R RACK1; ribosome, transl 100.0 8.8E-40 3E-44 278.7 32.8 260 25-359 70-339 (343)
38 2xyi_A Probable histone-bindin 100.0 5E-40 1.7E-44 288.8 32.1 293 19-361 116-411 (430)
39 2j04_B YDR362CP, TAU91; beta p 100.0 4E-41 1.4E-45 299.4 24.9 262 26-359 128-427 (524)
40 1erj_A Transcriptional repress 100.0 9.4E-40 3.2E-44 283.6 32.5 247 31-359 123-388 (393)
41 3iz6_a 40S ribosomal protein R 100.0 1E-40 3.6E-45 288.3 26.3 266 24-359 101-374 (380)
42 2pm9_A Protein WEB1, protein t 100.0 1.9E-40 6.5E-45 290.8 28.1 265 25-361 61-338 (416)
43 3dm0_A Maltose-binding peripla 100.0 1E-39 3.6E-44 303.8 34.0 254 24-359 375-631 (694)
44 1k8k_C P40, ARP2/3 complex 41 100.0 7E-40 2.4E-44 282.9 30.2 255 29-360 6-274 (372)
45 3jrp_A Fusion protein of prote 100.0 1.5E-39 5.2E-44 281.5 31.0 262 26-359 6-286 (379)
46 3i2n_A WD repeat-containing pr 100.0 3E-39 1E-43 277.3 32.1 309 20-360 7-353 (357)
47 3k26_A Polycomb protein EED; W 100.0 6.6E-40 2.2E-44 282.4 27.9 280 28-387 15-345 (366)
48 4ery_A WD repeat-containing pr 100.0 4E-39 1.4E-43 271.3 31.8 248 26-359 60-311 (312)
49 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-39 8.5E-44 276.8 30.1 279 26-359 6-336 (351)
50 1r5m_A SIR4-interacting protei 100.0 4.2E-40 1.4E-44 289.3 25.8 313 22-387 36-404 (425)
51 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-39 7.3E-44 307.8 31.7 271 25-387 7-280 (814)
52 2pm9_A Protein WEB1, protein t 100.0 1.8E-40 6E-45 291.0 21.4 277 29-387 10-315 (416)
53 3ei3_B DNA damage-binding prot 100.0 1.5E-38 5.3E-43 275.6 32.7 288 24-387 66-362 (383)
54 1r5m_A SIR4-interacting protei 100.0 3.7E-39 1.3E-43 283.3 27.4 295 30-359 107-424 (425)
55 2j04_B YDR362CP, TAU91; beta p 100.0 7.3E-39 2.5E-43 284.9 29.3 274 27-359 203-516 (524)
56 3dw8_B Serine/threonine-protei 100.0 3.3E-39 1.1E-43 285.7 27.0 289 28-360 25-373 (447)
57 4aez_A CDC20, WD repeat-contai 100.0 7.3E-38 2.5E-42 272.7 34.7 266 27-384 130-399 (401)
58 3gre_A Serine/threonine-protei 100.0 7.5E-39 2.6E-43 282.4 27.8 281 28-375 60-368 (437)
59 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-38 4.7E-43 277.5 28.7 279 31-387 34-323 (402)
60 3vl1_A 26S proteasome regulato 100.0 1.3E-38 4.6E-43 279.4 28.7 268 33-387 98-395 (420)
61 3dwl_C Actin-related protein 2 100.0 8.7E-40 3E-44 282.9 20.8 258 29-359 9-280 (377)
62 3dm0_A Maltose-binding peripla 100.0 4.1E-38 1.4E-42 293.0 33.2 265 24-359 423-692 (694)
63 4gga_A P55CDC, cell division c 100.0 2.4E-37 8E-42 271.1 35.4 252 23-360 139-395 (420)
64 1yfq_A Cell cycle arrest prote 100.0 1.7E-38 5.8E-43 271.0 27.0 268 29-384 9-301 (342)
65 1sq9_A Antiviral protein SKI8; 100.0 9.3E-38 3.2E-42 272.0 31.1 258 24-359 55-394 (397)
66 4aez_A CDC20, WD repeat-contai 100.0 4.1E-38 1.4E-42 274.3 28.8 267 29-387 89-359 (401)
67 2pm7_B Protein transport prote 100.0 3E-37 1E-41 257.5 31.9 244 80-387 3-264 (297)
68 3k26_A Polycomb protein EED; W 100.0 2.3E-38 7.8E-43 272.7 25.8 254 29-359 67-365 (366)
69 3sfz_A APAF-1, apoptotic pepti 100.0 7.2E-38 2.5E-42 309.8 32.7 326 24-387 608-1054(1249)
70 1gxr_A ESG1, transducin-like e 100.0 8.8E-37 3E-41 259.8 34.3 244 27-359 93-336 (337)
71 3v7d_B Cell division control p 100.0 4.1E-37 1.4E-41 273.5 32.5 285 25-387 156-443 (464)
72 4a11_B DNA excision repair pro 100.0 9.9E-37 3.4E-41 266.4 34.3 271 26-359 38-364 (408)
73 3vl1_A 26S proteasome regulato 100.0 6.7E-39 2.3E-43 281.4 20.6 263 32-387 57-345 (420)
74 3mmy_A MRNA export factor; mRN 100.0 1.8E-37 6.2E-42 267.3 28.8 279 19-387 27-325 (368)
75 3jro_A Fusion protein of prote 100.0 7.6E-38 2.6E-42 292.8 27.1 263 26-360 4-285 (753)
76 4h5i_A Guanine nucleotide-exch 100.0 4.5E-37 1.6E-41 263.6 29.6 180 151-360 159-343 (365)
77 4gga_A P55CDC, cell division c 100.0 1.8E-36 6.3E-41 265.4 34.1 263 34-387 108-374 (420)
78 3zwl_B Eukaryotic translation 100.0 1.8E-36 6.2E-41 261.1 33.1 257 25-359 68-345 (369)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-37 8.3E-42 273.3 28.2 297 25-387 112-417 (445)
80 3dwl_C Actin-related protein 2 100.0 1.2E-37 4.1E-42 269.4 24.7 212 25-295 49-281 (377)
81 3v7d_B Cell division control p 100.0 2.2E-36 7.5E-41 268.8 32.7 265 23-387 113-401 (464)
82 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-36 5.9E-41 261.7 31.1 270 24-359 45-360 (372)
83 4e54_B DNA damage-binding prot 100.0 2.7E-37 9.2E-42 271.9 26.1 252 24-359 157-429 (435)
84 3ei3_B DNA damage-binding prot 100.0 2.6E-36 9E-41 261.5 31.8 246 26-359 113-381 (383)
85 1p22_A F-BOX/WD-repeat protein 100.0 6.6E-37 2.2E-41 269.6 27.1 278 29-359 131-413 (435)
86 1pgu_A Actin interacting prote 100.0 1.1E-36 3.9E-41 280.2 29.5 304 29-387 16-348 (615)
87 2oaj_A Protein SNI1; WD40 repe 100.0 9.2E-38 3.1E-42 296.1 22.4 318 28-384 148-687 (902)
88 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-37 4E-42 308.2 23.2 302 28-387 837-1188(1249)
89 4ggc_A P55CDC, cell division c 100.0 2.3E-35 7.8E-40 249.0 33.8 263 34-387 28-294 (318)
90 3bg1_A Protein SEC13 homolog; 100.0 2.6E-37 9E-42 260.1 21.0 242 80-387 7-272 (316)
91 1pgu_A Actin interacting prote 100.0 6.8E-37 2.3E-41 281.7 23.5 304 25-387 197-594 (615)
92 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-35 6.5E-40 261.4 31.6 292 31-387 4-364 (450)
93 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-35 3.8E-40 259.2 29.2 257 26-360 76-342 (402)
94 3odt_A Protein DOA1; ubiquitin 100.0 7E-35 2.4E-39 245.4 32.2 243 24-359 52-295 (313)
95 4ggc_A P55CDC, cell division c 100.0 1.7E-34 5.7E-39 243.8 33.6 252 23-360 59-315 (318)
96 2xyi_A Probable histone-bindin 100.0 8.5E-35 2.9E-39 255.5 29.6 302 31-387 45-388 (430)
97 3lrv_A PRE-mRNA-splicing facto 100.0 7.6E-36 2.6E-40 254.5 21.4 237 43-360 47-292 (343)
98 2oaj_A Protein SNI1; WD40 repe 100.0 1E-34 3.4E-39 275.4 30.7 268 24-359 10-311 (902)
99 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-34 1.3E-38 271.8 33.1 252 25-360 49-302 (814)
100 3jrp_A Fusion protein of prote 100.0 9.3E-35 3.2E-39 251.4 25.8 245 77-387 2-266 (379)
101 3gre_A Serine/threonine-protei 100.0 3.4E-35 1.2E-39 259.1 23.2 270 25-357 105-437 (437)
102 4a11_B DNA excision repair pro 100.0 7.2E-35 2.5E-39 254.6 24.8 278 53-387 22-344 (408)
103 4aow_A Guanine nucleotide-bind 100.0 2.3E-34 7.9E-39 245.2 26.7 236 77-387 29-266 (340)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-34 7.8E-39 254.3 27.1 276 25-360 153-442 (445)
105 2j04_A TAU60, YPL007P, hypothe 100.0 5.8E-35 2E-39 253.8 21.9 246 29-387 13-277 (588)
106 1yfq_A Cell cycle arrest prote 100.0 1.8E-33 6.1E-38 240.0 30.3 260 22-358 47-322 (342)
107 4gq1_A NUP37; propeller, trans 100.0 3.1E-35 1.1E-39 255.0 18.4 240 42-359 99-388 (393)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.8E-33 3.3E-37 244.0 34.7 256 29-360 100-391 (450)
109 3dw8_B Serine/threonine-protei 100.0 1.7E-33 5.7E-38 249.0 28.5 283 24-359 74-445 (447)
110 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-33 4.5E-38 241.3 25.1 243 79-387 4-316 (351)
111 2j04_A TAU60, YPL007P, hypothe 100.0 1E-33 3.6E-38 246.0 23.8 254 28-387 49-340 (588)
112 3bws_A Protein LP49; two-domai 100.0 4.4E-32 1.5E-36 239.0 32.5 282 23-387 114-410 (433)
113 3vu4_A KMHSV2; beta-propeller 100.0 4.2E-33 1.5E-37 238.2 24.8 290 27-359 15-335 (355)
114 4h5i_A Guanine nucleotide-exch 100.0 5.5E-33 1.9E-37 238.2 24.4 204 30-296 132-344 (365)
115 4gq1_A NUP37; propeller, trans 100.0 6.3E-33 2.1E-37 240.5 23.6 243 93-387 95-369 (393)
116 3jro_A Fusion protein of prote 100.0 4.6E-33 1.6E-37 260.5 23.0 242 80-387 3-264 (753)
117 3i2n_A WD repeat-containing pr 100.0 1.1E-32 3.9E-37 236.3 22.1 256 24-296 58-354 (357)
118 1l0q_A Surface layer protein; 100.0 2.2E-30 7.6E-35 224.9 35.6 258 26-379 26-288 (391)
119 3mmy_A MRNA export factor; mRN 100.0 1.3E-31 4.4E-36 230.7 27.4 236 25-339 80-333 (368)
120 1l0q_A Surface layer protein; 100.0 3.2E-30 1.1E-34 224.0 32.3 250 44-387 2-253 (391)
121 2w18_A PALB2, fancn, partner a 100.0 2.6E-30 9E-35 211.2 26.9 253 22-359 77-356 (356)
122 3lrv_A PRE-mRNA-splicing facto 100.0 2.3E-30 7.8E-35 220.6 25.7 243 31-359 76-332 (343)
123 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.9E-29 6.4E-34 219.9 30.9 268 25-387 111-407 (415)
124 3vu4_A KMHSV2; beta-propeller 100.0 9.9E-30 3.4E-34 217.3 24.7 213 77-361 10-272 (355)
125 3bws_A Protein LP49; two-domai 100.0 9.9E-29 3.4E-33 217.5 31.8 242 28-359 166-431 (433)
126 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-30 8.5E-35 227.7 21.1 259 83-386 130-394 (435)
127 2w18_A PALB2, fancn, partner a 100.0 1.9E-29 6.4E-34 206.2 23.0 197 30-293 110-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-27 6.2E-32 207.3 22.6 263 30-387 61-363 (415)
129 1nir_A Nitrite reductase; hemo 100.0 1.3E-25 4.5E-30 201.4 31.6 282 34-387 181-488 (543)
130 2ojh_A Uncharacterized protein 100.0 2.4E-25 8.1E-30 185.5 28.0 244 25-343 35-293 (297)
131 1nir_A Nitrite reductase; hemo 99.9 2.4E-25 8.1E-30 199.7 28.2 262 38-387 144-430 (543)
132 3vgz_A Uncharacterized protein 99.9 2.1E-24 7.2E-29 184.6 32.2 274 28-387 37-323 (353)
133 1ri6_A Putative isomerase YBHE 99.9 1.5E-24 5E-29 184.8 30.3 262 23-359 29-307 (343)
134 2ojh_A Uncharacterized protein 99.9 1.2E-25 4.2E-30 187.2 22.3 251 49-387 17-281 (297)
135 2ecf_A Dipeptidyl peptidase IV 99.9 5.9E-25 2E-29 206.5 26.4 264 31-387 36-389 (741)
136 3u4y_A Uncharacterized protein 99.9 1.1E-23 3.9E-28 178.4 30.8 248 29-360 38-304 (331)
137 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-24 4.4E-29 190.0 25.5 223 31-296 36-279 (434)
138 3hfq_A Uncharacterized protein 99.9 1E-23 3.6E-28 179.8 30.5 273 22-359 30-316 (347)
139 3u4y_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 180.3 28.3 238 38-359 4-251 (331)
140 1ri6_A Putative isomerase YBHE 99.9 1.9E-23 6.4E-28 177.9 28.4 272 43-387 4-286 (343)
141 3scy_A Hypothetical bacterial 99.9 4E-22 1.4E-26 171.0 35.9 295 24-387 43-361 (361)
142 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-24 1.5E-28 200.0 24.3 230 32-339 17-323 (723)
143 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-24 1.1E-28 201.5 22.0 282 32-387 109-434 (741)
144 2z3z_A Dipeptidyl aminopeptida 99.9 5.9E-23 2E-27 191.8 28.2 256 25-360 114-435 (706)
145 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-23 6E-28 195.4 24.3 278 32-387 82-410 (706)
146 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-23 5.1E-28 183.2 20.8 228 89-360 38-278 (434)
147 3o4h_A Acylamino-acid-releasin 99.9 5.6E-23 1.9E-27 187.5 23.8 235 30-358 20-274 (582)
148 1k32_A Tricorn protease; prote 99.9 8E-23 2.7E-27 198.4 24.1 279 26-387 198-481 (1045)
149 1xfd_A DIP, dipeptidyl aminope 99.9 6.2E-23 2.1E-27 192.3 22.1 280 33-387 62-419 (723)
150 3vgz_A Uncharacterized protein 99.9 2.2E-21 7.6E-26 165.8 29.9 234 28-342 85-334 (353)
151 1jmx_B Amine dehydrogenase; ox 99.9 2.3E-22 8E-27 171.6 23.7 243 36-376 4-335 (349)
152 1pby_B Quinohemoprotein amine 99.9 6E-22 2E-26 168.2 24.1 244 33-376 35-320 (337)
153 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.7E-21 2.6E-25 163.0 27.9 254 30-359 38-340 (365)
154 3hfq_A Uncharacterized protein 99.9 6.9E-21 2.4E-25 162.4 26.7 258 52-387 14-295 (347)
155 1z68_A Fibroblast activation p 99.9 2.2E-22 7.4E-27 188.4 18.8 243 35-359 19-345 (719)
156 1k32_A Tricorn protease; prote 99.9 2E-21 7E-26 188.5 25.8 277 30-387 294-617 (1045)
157 1pby_B Quinohemoprotein amine 99.9 2.7E-21 9.3E-26 164.1 21.6 246 45-387 2-289 (337)
158 3scy_A Hypothetical bacterial 99.9 3.1E-19 1.1E-23 153.0 28.8 268 45-387 14-315 (361)
159 4a5s_A Dipeptidyl peptidase 4 99.9 9.3E-20 3.2E-24 170.7 25.2 254 31-359 16-352 (740)
160 3pe7_A Oligogalacturonate lyas 99.9 5.9E-20 2E-24 159.1 22.0 277 26-387 25-360 (388)
161 3fvz_A Peptidyl-glycine alpha- 99.9 4.9E-18 1.7E-22 143.3 31.8 250 31-359 23-321 (329)
162 1z68_A Fibroblast activation p 99.8 3E-20 1E-24 173.9 17.4 280 33-387 61-419 (719)
163 1q7f_A NHL, brain tumor CG1071 99.8 1.8E-17 6.2E-22 137.1 29.9 237 29-359 27-279 (286)
164 3azo_A Aminopeptidase; POP fam 99.8 2.1E-18 7.3E-23 159.9 24.8 264 26-385 18-344 (662)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.1E-18 1.7E-22 145.5 25.3 212 89-359 41-290 (365)
166 3o4h_A Acylamino-acid-releasin 99.8 7.8E-19 2.7E-23 160.2 21.4 235 26-359 58-314 (582)
167 2oiz_A Aromatic amine dehydrog 99.8 1E-17 3.4E-22 143.0 23.7 258 36-387 54-357 (361)
168 3pe7_A Oligogalacturonate lyas 99.8 7.7E-18 2.6E-22 145.8 21.2 242 29-359 78-381 (388)
169 2dg1_A DRP35, lactonase; beta 99.8 1.6E-17 5.6E-22 140.6 21.5 268 32-387 6-289 (333)
170 1jmx_B Amine dehydrogenase; ox 99.8 5.1E-17 1.7E-21 138.4 23.7 197 33-296 44-326 (349)
171 2dg1_A DRP35, lactonase; beta 99.8 3.5E-15 1.2E-19 126.2 34.9 252 26-359 39-315 (333)
172 2xdw_A Prolyl endopeptidase; a 99.8 1.6E-16 5.6E-21 148.1 28.8 250 30-360 123-414 (710)
173 3azo_A Aminopeptidase; POP fam 99.8 2.2E-17 7.4E-22 153.1 21.0 240 26-340 62-353 (662)
174 4a5s_A Dipeptidyl peptidase 4 99.8 1.8E-17 6.3E-22 155.2 19.2 199 90-359 19-293 (740)
175 3fvz_A Peptidyl-glycine alpha- 99.8 2.5E-15 8.5E-20 126.7 30.1 251 89-387 25-301 (329)
176 1rwi_B Serine/threonine-protei 99.8 9.8E-16 3.3E-20 125.5 26.4 238 33-359 25-263 (270)
177 3e5z_A Putative gluconolactona 99.8 2.7E-15 9.4E-20 124.6 29.0 231 26-340 22-275 (296)
178 3c5m_A Oligogalacturonate lyas 99.8 2.5E-17 8.4E-22 143.0 16.2 263 34-341 38-370 (396)
179 2bkl_A Prolyl endopeptidase; m 99.7 2.1E-16 7.2E-21 147.0 23.1 250 29-360 118-397 (695)
180 2gop_A Trilobed protease; beta 99.7 1.6E-15 5.4E-20 129.1 24.1 242 31-387 14-311 (347)
181 2z2n_A Virginiamycin B lyase; 99.7 2.8E-13 9.7E-18 112.5 34.6 241 29-359 12-254 (299)
182 1q7f_A NHL, brain tumor CG1071 99.7 1.8E-14 6.2E-19 119.0 26.1 198 30-295 75-280 (286)
183 3dsm_A Uncharacterized protein 99.7 1.5E-14 5.3E-19 121.7 24.6 254 32-374 44-309 (328)
184 2gop_A Trilobed protease; beta 99.7 6.3E-15 2.2E-19 125.4 22.3 212 32-341 59-318 (347)
185 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.4E-13 8.1E-18 113.9 30.5 246 29-360 15-299 (314)
186 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-14 5E-19 134.6 24.6 222 89-387 122-372 (695)
187 3e5z_A Putative gluconolactona 99.7 3.3E-14 1.1E-18 118.0 24.3 223 79-385 20-263 (296)
188 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4.3E-18 123.7 29.4 237 43-360 166-421 (567)
189 2xdw_A Prolyl endopeptidase; a 99.7 2.4E-14 8.3E-19 133.5 25.9 228 89-387 126-389 (710)
190 3no2_A Uncharacterized protein 99.7 8.2E-14 2.8E-18 113.8 25.6 213 43-339 4-230 (276)
191 1qks_A Cytochrome CD1 nitrite 99.7 7.9E-13 2.7E-17 118.5 32.8 268 26-361 191-478 (567)
192 1yr2_A Prolyl oligopeptidase; 99.6 7.4E-14 2.5E-18 130.8 25.2 252 30-360 161-441 (741)
193 1xip_A Nucleoporin NUP159; bet 99.6 8.7E-14 3E-18 117.6 22.6 181 33-280 39-230 (388)
194 2qc5_A Streptogramin B lactona 99.6 6.8E-12 2.3E-16 104.2 33.0 241 29-359 17-259 (300)
195 2z2n_A Virginiamycin B lyase; 99.6 1.8E-11 6.3E-16 101.5 34.1 238 30-359 55-294 (299)
196 3hrp_A Uncharacterized protein 99.6 3E-12 1E-16 110.8 30.0 254 32-358 131-408 (409)
197 3g4e_A Regucalcin; six bladed 99.6 4.5E-12 1.5E-16 105.1 28.7 232 32-342 13-262 (297)
198 2oiz_A Aromatic amine dehydrog 99.6 4E-13 1.4E-17 114.5 22.3 227 32-334 108-360 (361)
199 1rwi_B Serine/threonine-protei 99.6 7.5E-13 2.6E-17 108.3 22.8 217 90-387 26-243 (270)
200 1xip_A Nucleoporin NUP159; bet 99.6 2.2E-13 7.4E-18 115.2 19.6 194 89-342 39-234 (388)
201 3c5m_A Oligogalacturonate lyas 99.6 4E-14 1.4E-18 122.7 15.2 200 90-359 38-272 (396)
202 3g4e_A Regucalcin; six bladed 99.6 2.9E-12 9.9E-17 106.3 24.3 223 89-386 14-249 (297)
203 2mad_H Methylamine dehydrogena 99.5 3.9E-11 1.3E-15 102.3 30.5 243 36-372 70-356 (373)
204 2qc5_A Streptogramin B lactona 99.5 2.3E-10 7.7E-15 94.9 33.8 227 30-337 60-287 (300)
205 3iuj_A Prolyl endopeptidase; h 99.5 2.8E-12 9.7E-17 119.0 24.0 246 30-359 127-404 (693)
206 3dsm_A Uncharacterized protein 99.5 3.9E-12 1.3E-16 107.0 22.6 243 52-387 15-276 (328)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 8.2E-12 2.8E-16 104.5 24.4 225 90-387 20-277 (314)
208 2ghs_A AGR_C_1268P; regucalcin 99.5 6.3E-11 2.1E-15 99.5 29.6 232 33-342 50-292 (326)
209 3no2_A Uncharacterized protein 99.5 5.2E-12 1.8E-16 103.1 21.5 191 98-374 4-203 (276)
210 1yr2_A Prolyl oligopeptidase; 99.5 7E-12 2.4E-16 117.4 24.2 222 89-387 164-416 (741)
211 3dr2_A Exported gluconolactona 99.5 1.5E-10 5.2E-15 96.3 27.9 230 26-341 39-296 (305)
212 3hrp_A Uncharacterized protein 99.4 5.2E-11 1.8E-15 103.0 24.1 208 89-359 132-353 (409)
213 3sjl_D Methylamine dehydrogena 99.4 4.6E-11 1.6E-15 100.6 22.1 247 36-375 82-372 (386)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 2E-10 6.7E-15 96.5 25.6 218 90-386 51-279 (326)
215 3iuj_A Prolyl endopeptidase; h 99.4 3.8E-11 1.3E-15 111.5 20.3 201 89-359 130-358 (693)
216 2mad_H Methylamine dehydrogena 99.3 5.3E-09 1.8E-13 89.2 29.8 269 43-387 31-327 (373)
217 3c75_H MADH, methylamine dehyd 99.3 9.8E-11 3.4E-15 100.4 19.1 267 54-373 99-409 (426)
218 2qe8_A Uncharacterized protein 99.3 3.6E-10 1.2E-14 95.7 22.5 247 32-338 17-307 (343)
219 3dr2_A Exported gluconolactona 99.3 7.7E-10 2.6E-14 92.0 23.2 216 89-387 46-286 (305)
220 2ece_A 462AA long hypothetical 99.3 1.3E-09 4.5E-14 92.5 24.3 234 41-340 93-399 (462)
221 1mda_H Methylamine dehydrogena 99.3 3.2E-11 1.1E-15 101.7 14.1 252 36-386 69-365 (368)
222 1npe_A Nidogen, entactin; glyc 99.3 3.8E-08 1.3E-12 80.0 31.3 253 45-387 2-260 (267)
223 2qe8_A Uncharacterized protein 99.2 3.1E-09 1.1E-13 89.9 21.6 213 89-359 18-277 (343)
224 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.4E-16 105.5 5.7 184 43-297 8-194 (369)
225 3c75_H MADH, methylamine dehyd 99.2 1.2E-09 4.2E-14 93.7 17.6 236 36-296 122-403 (426)
226 2iwa_A Glutamine cyclotransfer 99.2 4.2E-08 1.4E-12 78.3 24.5 207 22-296 9-238 (266)
227 2iwa_A Glutamine cyclotransfer 99.2 4.6E-08 1.6E-12 78.1 24.1 198 90-361 23-238 (266)
228 1npe_A Nidogen, entactin; glyc 99.1 1.3E-06 4.5E-11 70.9 32.5 200 32-296 36-239 (267)
229 3sjl_D Methylamine dehydrogena 99.1 2.8E-08 9.6E-13 83.8 22.4 201 33-296 138-364 (386)
230 2ece_A 462AA long hypothetical 99.1 9.2E-08 3.2E-12 81.4 25.4 169 171-360 139-352 (462)
231 1fwx_A Nitrous oxide reductase 99.1 1.1E-08 3.8E-13 90.0 19.3 153 192-359 254-430 (595)
232 2hz6_A Endoplasmic reticulum t 99.0 5.1E-11 1.7E-15 101.8 2.8 142 98-297 8-151 (369)
233 3nol_A Glutamine cyclotransfer 99.0 1.3E-07 4.5E-12 74.5 21.4 203 80-341 35-244 (262)
234 3v64_C Agrin; beta propeller, 99.0 4.1E-06 1.4E-10 70.7 32.1 238 31-358 33-273 (349)
235 3v65_B Low-density lipoprotein 99.0 2.7E-06 9.3E-11 72.9 30.9 235 35-359 80-317 (386)
236 1kb0_A Quinohemoprotein alcoho 99.0 3E-08 1E-12 91.4 19.5 277 45-375 78-516 (677)
237 1yiq_A Quinohemoprotein alcoho 99.0 8.7E-08 3E-12 88.5 21.4 182 44-257 121-343 (689)
238 2fp8_A Strictosidine synthase; 99.0 1.7E-06 5.7E-11 72.4 27.4 239 32-359 19-312 (322)
239 3nol_A Glutamine cyclotransfer 98.9 5.3E-07 1.8E-11 71.0 21.0 192 22-283 31-244 (262)
240 1ijq_A LDL receptor, low-densi 98.9 1.4E-05 4.8E-10 66.5 32.7 224 54-359 10-237 (316)
241 3qqz_A Putative uncharacterize 98.9 4.5E-06 1.6E-10 66.2 26.1 208 29-292 24-250 (255)
242 3mbr_X Glutamine cyclotransfer 98.9 1.8E-06 6.2E-11 67.4 22.8 206 78-341 11-223 (243)
243 3nok_A Glutaminyl cyclase; bet 98.9 1.7E-06 5.7E-11 68.3 22.2 190 89-341 56-254 (268)
244 3hxj_A Pyrrolo-quinoline quino 98.9 5.6E-07 1.9E-11 75.5 21.2 151 166-359 173-323 (330)
245 3nok_A Glutaminyl cyclase; bet 98.9 8.5E-07 2.9E-11 69.9 20.4 191 23-283 44-254 (268)
246 3hxj_A Pyrrolo-quinoline quino 98.9 2.6E-08 9.1E-13 83.7 12.5 249 46-359 32-283 (330)
247 3mbr_X Glutamine cyclotransfer 98.9 2.7E-06 9.4E-11 66.4 22.4 193 22-284 9-224 (243)
248 1mda_H Methylamine dehydrogena 98.8 1.5E-07 5.1E-12 79.5 15.4 267 44-387 32-323 (368)
249 2p4o_A Hypothetical protein; p 98.8 3.2E-05 1.1E-09 64.0 30.1 242 22-341 22-277 (306)
250 1fwx_A Nitrous oxide reductase 98.8 9.9E-07 3.4E-11 77.9 20.9 202 97-359 99-360 (595)
251 3p5b_L Low density lipoprotein 98.8 5E-05 1.7E-09 65.3 33.7 231 46-359 85-319 (400)
252 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.8E-06 9.4E-11 72.8 23.2 267 44-373 53-344 (376)
253 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.2E-06 7.6E-11 73.4 22.5 219 44-296 103-338 (376)
254 3v65_B Low-density lipoprotein 98.8 3.1E-05 1.1E-09 66.3 29.4 203 31-296 115-319 (386)
255 1kb0_A Quinohemoprotein alcoho 98.8 1.7E-06 5.7E-11 79.9 22.9 152 183-360 328-567 (677)
256 3v64_C Agrin; beta propeller, 98.8 5.3E-05 1.8E-09 63.9 31.7 202 31-295 72-275 (349)
257 1yiq_A Quinohemoprotein alcoho 98.8 2.2E-06 7.5E-11 79.2 22.8 82 236-340 454-536 (689)
258 3sov_A LRP-6, low-density lipo 98.8 4.5E-05 1.6E-09 63.3 28.6 222 53-359 12-237 (318)
259 2xe4_A Oligopeptidase B; hydro 98.7 5.7E-06 1.9E-10 77.5 24.9 197 33-292 175-395 (751)
260 2p4o_A Hypothetical protein; p 98.7 1.4E-05 4.9E-10 66.1 24.0 217 89-386 33-263 (306)
261 1k3i_A Galactose oxidase precu 98.7 4E-06 1.4E-10 77.4 22.4 74 36-119 190-275 (656)
262 3m0c_C LDL receptor, low-densi 98.7 9.8E-05 3.4E-09 68.9 30.9 224 54-359 404-631 (791)
263 1kv9_A Type II quinohemoprotei 98.6 3.2E-06 1.1E-10 77.9 18.8 75 173-257 233-338 (668)
264 3sov_A LRP-6, low-density lipo 98.6 0.00018 6E-09 59.7 28.6 203 32-297 35-240 (318)
265 2fp8_A Strictosidine synthase; 98.6 2.4E-05 8.1E-10 65.3 21.7 202 32-295 80-313 (322)
266 1ijq_A LDL receptor, low-densi 98.6 0.00022 7.6E-09 59.2 31.0 230 2-296 4-239 (316)
267 1n7d_A LDL receptor, low-densi 98.5 2.4E-06 8.2E-11 79.0 16.1 156 172-359 455-613 (699)
268 3tc9_A Hypothetical hydrolase; 98.5 0.00026 8.9E-09 61.5 27.5 258 33-359 138-429 (430)
269 4hw6_A Hypothetical protein, I 98.5 0.00034 1.2E-08 60.7 27.0 258 33-359 140-432 (433)
270 3p5b_L Low density lipoprotein 98.5 0.00053 1.8E-08 58.9 31.7 208 28-296 108-321 (400)
271 3m0c_C LDL receptor, low-densi 98.4 0.00073 2.5E-08 63.1 29.1 208 29-296 421-633 (791)
272 2xe4_A Oligopeptidase B; hydro 98.4 3.8E-05 1.3E-09 72.0 20.7 159 89-295 175-354 (751)
273 4a2l_A BT_4663, two-component 98.4 0.0015 5.2E-08 61.8 32.5 251 31-359 262-525 (795)
274 2ad6_A Methanol dehydrogenase 98.4 3.8E-05 1.3E-09 69.3 19.6 59 192-259 272-342 (571)
275 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0018 6E-08 59.1 32.0 221 52-359 13-236 (628)
276 3s94_A LRP-6, low-density lipo 98.3 0.0021 7.3E-08 58.5 28.2 157 90-295 42-202 (619)
277 4a2l_A BT_4663, two-component 98.2 0.0037 1.3E-07 59.1 31.3 224 31-337 356-601 (795)
278 1k3i_A Galactose oxidase precu 98.2 8.8E-05 3E-09 68.4 18.3 73 35-120 246-325 (656)
279 1kv9_A Type II quinohemoprotei 98.2 0.00024 8.2E-09 65.5 20.8 54 236-297 437-490 (668)
280 1w6s_A Methanol dehydrogenase 98.2 0.00041 1.4E-08 62.7 21.6 61 192-259 278-349 (599)
281 1n7d_A LDL receptor, low-densi 98.2 2.3E-05 7.7E-10 72.5 13.6 206 31-296 405-615 (699)
282 3qqz_A Putative uncharacterize 98.2 0.0015 5.3E-08 51.7 26.5 194 83-337 23-239 (255)
283 3tc9_A Hypothetical hydrolase; 98.2 0.00021 7.2E-09 62.1 18.3 157 171-359 138-300 (430)
284 3kya_A Putative phosphatase; s 98.2 0.0032 1.1E-07 55.0 29.1 264 33-360 140-475 (496)
285 2p9w_A MAL S 1 allergenic prot 98.1 0.0007 2.4E-08 55.4 19.8 215 35-296 16-266 (334)
286 3s94_A LRP-6, low-density lipo 98.1 0.0059 2E-07 55.6 27.5 205 30-297 38-245 (619)
287 4hw6_A Hypothetical protein, I 98.1 0.0015 5E-08 56.8 21.7 155 91-295 142-304 (433)
288 3amr_A 3-phytase; beta-propell 98.1 0.0025 8.7E-08 52.6 21.4 123 170-295 128-263 (355)
289 2p9w_A MAL S 1 allergenic prot 98.0 0.00097 3.3E-08 54.5 18.5 164 169-361 12-216 (334)
290 1flg_A Protein (quinoprotein e 98.0 0.0016 5.5E-08 58.9 22.0 62 192-260 291-363 (582)
291 3v9f_A Two-component system se 98.0 0.0071 2.4E-07 57.1 27.0 247 31-359 312-567 (781)
292 3amr_A 3-phytase; beta-propell 98.0 0.0043 1.5E-07 51.2 23.8 170 170-359 68-262 (355)
293 2ad6_A Methanol dehydrogenase 98.0 0.0025 8.5E-08 57.6 21.8 54 236-297 443-496 (571)
294 1flg_A Protein (quinoprotein e 97.9 0.0079 2.7E-07 54.4 23.7 54 236-297 465-518 (582)
295 3v9f_A Two-component system se 97.9 0.019 6.4E-07 54.2 29.5 254 31-359 257-523 (781)
296 3kya_A Putative phosphatase; s 97.8 0.0013 4.5E-08 57.5 17.1 171 171-359 140-340 (496)
297 1w6s_A Methanol dehydrogenase 97.8 0.0032 1.1E-07 57.0 20.2 55 236-298 452-506 (599)
298 4a0p_A LRP6, LRP-6, low-densit 97.8 0.02 6.7E-07 52.3 31.9 202 30-297 35-239 (628)
299 3ei3_A DNA damage-binding prot 97.8 0.037 1.3E-06 54.3 28.3 78 28-117 550-635 (1158)
300 2xbg_A YCF48-like protein; pho 97.4 0.037 1.3E-06 46.0 26.0 158 169-358 162-320 (327)
301 2vpj_A Kelch-like protein 12; 97.4 0.036 1.2E-06 45.3 21.4 104 183-296 114-232 (301)
302 2xzh_A Clathrin heavy chain 1; 97.4 0.038 1.3E-06 45.0 26.1 231 52-372 47-296 (365)
303 1zgk_A Kelch-like ECH-associat 97.4 0.027 9.1E-07 46.4 18.4 104 183-296 123-241 (308)
304 2xn4_A Kelch-like protein 2; s 97.4 0.041 1.4E-06 45.0 19.8 104 183-296 110-230 (302)
305 3ii7_A Kelch-like protein 7; p 97.2 0.065 2.2E-06 43.9 21.2 104 183-296 103-226 (306)
306 2xbg_A YCF48-like protein; pho 97.2 0.072 2.5E-06 44.2 29.2 107 171-292 123-231 (327)
307 3sre_A PON1, serum paraoxonase 97.2 0.079 2.7E-06 44.3 20.9 160 171-359 51-251 (355)
308 3sre_A PON1, serum paraoxonase 97.2 0.08 2.7E-06 44.3 23.7 145 171-338 113-283 (355)
309 2ism_A Putative oxidoreductase 97.2 0.087 3E-06 44.2 27.2 247 30-339 29-332 (352)
310 2ism_A Putative oxidoreductase 97.1 0.092 3.2E-06 44.1 20.3 105 91-234 34-153 (352)
311 1bpo_A Protein (clathrin); cla 97.0 0.12 4.2E-06 43.9 27.2 230 52-371 46-294 (494)
312 2vpj_A Kelch-like protein 12; 97.0 0.09 3.1E-06 42.9 17.9 105 180-295 159-278 (301)
313 3pbp_A Nucleoporin NUP82; beta 96.9 0.15 5.2E-06 43.3 19.8 123 89-242 67-208 (452)
314 3a9g_A Putative uncharacterize 96.8 0.17 6E-06 42.4 28.2 249 29-338 26-328 (354)
315 3ii7_A Kelch-like protein 7; p 96.8 0.099 3.4E-06 42.8 16.5 103 183-295 151-272 (306)
316 2xn4_A Kelch-like protein 2; s 96.8 0.061 2.1E-06 44.0 14.8 103 183-295 157-276 (302)
317 1xi4_A Clathrin heavy chain; a 96.7 0.31 1.1E-05 48.2 20.6 233 53-372 47-295 (1630)
318 2xzh_A Clathrin heavy chain 1; 96.7 0.2 6.8E-06 40.9 28.0 196 40-296 75-291 (365)
319 4asc_A Kelch repeat and BTB do 96.6 0.24 8.1E-06 40.7 18.3 104 183-296 100-222 (315)
320 2uvk_A YJHT; unknown function, 96.4 0.16 5.4E-06 42.7 15.4 51 192-244 168-224 (357)
321 1zgk_A Kelch-like ECH-associat 96.3 0.17 5.9E-06 41.4 14.7 103 183-295 170-287 (308)
322 3pbp_A Nucleoporin NUP82; beta 96.3 0.46 1.6E-05 40.4 21.0 139 191-338 40-196 (452)
323 3a9g_A Putative uncharacterize 96.2 0.45 1.5E-05 39.9 21.2 106 90-234 31-153 (354)
324 2g8s_A Glucose/sorbosone dehyd 96.2 0.46 1.6E-05 39.8 22.5 28 90-117 20-47 (353)
325 3ei3_A DNA damage-binding prot 96.1 1.2 4E-05 44.0 27.0 113 169-295 885-999 (1158)
326 1xi4_A Clathrin heavy chain; a 95.8 1.8 6.1E-05 43.2 20.3 197 40-297 74-291 (1630)
327 1bpo_A Protein (clathrin); cla 95.7 0.9 3.1E-05 38.8 28.9 196 40-296 74-290 (494)
328 2g8s_A Glucose/sorbosone dehyd 95.5 0.9 3.1E-05 38.0 27.0 69 256-338 264-339 (353)
329 1tl2_A L10, protein (tachylect 95.5 0.62 2.1E-05 35.7 13.8 63 172-240 90-157 (236)
330 3das_A Putative oxidoreductase 95.4 0.95 3.2E-05 37.7 21.9 110 90-234 34-158 (347)
331 2woz_A Kelch repeat and BTB do 95.4 0.9 3.1E-05 37.3 19.0 104 183-296 111-232 (318)
332 1cru_A Protein (soluble quinop 95.3 1.3 4.4E-05 38.6 18.7 28 90-117 29-56 (454)
333 2zwa_A Leucine carboxyl methyl 95.1 1.5 5.2E-05 40.6 17.2 66 180-246 500-577 (695)
334 2woz_A Kelch repeat and BTB do 94.9 0.87 3E-05 37.4 14.0 63 180-246 158-231 (318)
335 1tl2_A L10, protein (tachylect 94.9 0.11 3.8E-06 39.7 7.4 110 171-289 42-157 (236)
336 1cru_A Protein (soluble quinop 94.9 1.8 6.1E-05 37.7 22.5 112 169-283 26-162 (454)
337 4asc_A Kelch repeat and BTB do 94.4 1.7 5.8E-05 35.5 16.7 61 183-246 150-221 (315)
338 3das_A Putative oxidoreductase 94.2 2.1 7.2E-05 35.6 30.5 255 26-340 26-326 (347)
339 2uvk_A YJHT; unknown function, 93.4 1.9 6.4E-05 36.0 13.2 22 43-64 65-96 (357)
340 2be1_A Serine/threonine-protei 93.3 2.4 8.1E-05 35.1 13.0 59 183-243 112-181 (339)
341 2zwa_A Leucine carboxyl methyl 92.4 3.6 0.00012 38.1 14.4 71 175-246 544-635 (695)
342 3sbq_A Nitrous-oxide reductase 91.4 0.48 1.7E-05 41.8 6.8 81 213-296 321-409 (638)
343 2wg3_C Hedgehog-interacting pr 90.2 8.8 0.0003 33.4 14.6 118 215-342 14-158 (463)
344 3sbq_A Nitrous-oxide reductase 86.7 8.9 0.0003 34.1 11.1 76 170-246 323-408 (638)
345 4gq2_M Nucleoporin NUP120; bet 86.7 24 0.00082 34.1 15.4 37 89-125 237-273 (950)
346 1sqj_A OXG-RCBH, oligoxylogluc 86.5 22 0.00075 33.5 17.4 30 31-60 14-43 (789)
347 3b7f_A Glycosyl hydrolase, BNR 85.6 15 0.00053 30.9 19.7 71 170-240 115-202 (394)
348 4gq2_M Nucleoporin NUP120; bet 83.8 26 0.00088 33.9 14.1 33 265-298 237-269 (950)
349 3ott_A Two-component system se 76.6 49 0.0017 30.9 27.2 109 170-295 146-260 (758)
350 3zwu_A Alkaline phosphatase PH 71.0 19 0.00064 32.5 8.5 59 34-105 478-548 (592)
351 3s25_A Hypothetical 7-bladed b 70.8 40 0.0014 27.2 22.3 103 176-296 110-217 (302)
352 3q6k_A 43.2 kDa salivary prote 69.6 50 0.0017 27.8 11.8 76 264-340 152-242 (381)
353 3b7f_A Glycosyl hydrolase, BNR 69.5 50 0.0017 27.8 25.3 68 170-237 177-254 (394)
354 2be1_A Serine/threonine-protei 68.2 7.3 0.00025 32.2 5.0 64 227-296 10-77 (339)
355 3s25_A Hypothetical 7-bladed b 63.6 57 0.002 26.3 23.1 103 175-295 150-255 (302)
356 3uc1_A DNA gyrase subunit A; D 63.4 61 0.0021 26.6 20.8 178 30-246 93-279 (327)
357 4fhn_B Nucleoporin NUP120; pro 62.6 12 0.0004 37.1 6.1 37 90-126 240-276 (1139)
358 4a9v_A PHOX; hydrolase, beta-p 62.3 50 0.0017 29.6 9.2 61 32-105 476-548 (592)
359 4fhn_B Nucleoporin NUP120; pro 60.6 11 0.00037 37.4 5.4 29 323-359 239-267 (1139)
360 3uc1_A DNA gyrase subunit A; D 58.2 76 0.0026 26.0 20.3 222 31-295 41-279 (327)
361 3zwu_A Alkaline phosphatase PH 55.8 47 0.0016 30.0 8.1 60 216-282 477-549 (592)
362 4a9v_A PHOX; hydrolase, beta-p 54.7 86 0.0029 28.2 9.4 65 215-286 476-553 (592)
363 3ott_A Two-component system se 52.3 1.5E+02 0.0051 27.6 27.8 111 170-296 472-587 (758)
364 1sqj_A OXG-RCBH, oligoxylogluc 49.4 95 0.0032 29.3 9.6 63 169-234 14-83 (789)
365 3q6k_A 43.2 kDa salivary prote 48.3 1.2E+02 0.0042 25.5 21.5 154 170-338 152-340 (381)
366 2cn3_A Xyloglucanase, beta-1,4 43.8 1.7E+02 0.0059 27.2 10.4 116 170-290 23-159 (737)
367 3f7f_A Nucleoporin NUP120; nuc 41.5 24 0.00081 32.6 4.0 37 89-127 223-259 (729)
368 3qhy_B Beta-lactamase inhibito 39.5 1.4E+02 0.0049 23.6 22.2 145 170-360 102-246 (282)
369 3f7f_A Nucleoporin NUP120; nuc 35.5 53 0.0018 30.4 5.3 28 226-259 230-257 (729)
370 1zi0_A DNA gyrase subunit A; b 26.2 2.6E+02 0.0088 22.5 24.7 161 98-295 108-277 (307)
371 3l6v_A GYRA, DNA gyrase subuni 24.4 3.1E+02 0.011 22.9 26.3 85 30-119 44-133 (370)
372 3qhy_B Beta-lactamase inhibito 24.3 2.6E+02 0.009 22.0 17.8 107 170-296 141-247 (282)
373 2wg3_C Hedgehog-interacting pr 22.1 3.9E+02 0.013 23.2 30.7 30 32-63 14-45 (463)
374 1q47_A Semaphorin 3A; beta pro 22.1 3.2E+02 0.011 23.9 7.7 77 33-113 405-487 (495)
375 1suu_A DNA gyrase subunit A; t 21.2 3.3E+02 0.011 22.0 24.9 176 32-247 47-232 (312)
376 1q47_A Semaphorin 3A; beta pro 20.8 3.8E+02 0.013 23.5 7.9 70 171-241 405-487 (495)
377 3al9_A Plexin-A2; beta-propell 20.4 4.3E+02 0.015 23.5 8.2 73 33-113 401-476 (539)
378 3nvq_A Semaphorin-7A; beta-pro 20.1 4E+02 0.014 24.1 7.9 59 183-242 381-445 (590)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.7e-49 Score=342.69 Aligned_cols=270 Identities=21% Similarity=0.374 Sum_probs=245.2
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.+|.++|++++|+| ++.+|++|+.||+|+|||+.++ +....+.+|.+ .|.+++|+|++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~-~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLA 166 (410)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEE
T ss_pred eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCC-cEEEEEEcCCCCEEE
Confidence 345678999999999999 8899999999999999999998 67788999998 699999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.|++|++||+.+.. .+..+.+|...|.+++|+|++ .
T Consensus 167 sgs~D~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~v~~~p~~-~ 205 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFE----------------------------------------CIRTMHGHDHNVSSVSIMPNG-D 205 (410)
T ss_dssp EEETTSCCCEEETTSSC----------------------------------------EEECCCCCSSCEEEEEECSSS-S
T ss_pred EEeCCCeEEEEeCCCCc----------------------------------------eeEEEcCCCCCEEEEEEeCCC-C
Confidence 99999999999997532 335677899999999999998 7
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
++++|+.|+.|++||++++. ....+.+|...|.++.++| ++.+|++|+.||.|++||+++ ..+...+..|.
T Consensus 206 ~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~------~~~~~~~~~h~ 276 (410)
T 1vyh_C 206 HIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT------KECKAELREHR 276 (410)
T ss_dssp EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCCS
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CceeeEecCCC
Confidence 89999999999999999887 6778889999999999999 999999999999999999998 88889999999
Q ss_pred ceEEEEEEcCC--------------------CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 264 AAVLCVQWSPD--------------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 264 ~~i~~~~~~~~--------------------~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
..|.+++|+|+ +. +|++|+.|+.|++||++.. .++..+.+|...
T Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~---------------~~~~~~~~h~~~ 340 (410)
T 1vyh_C 277 HVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTG---------------MCLMTLVGHDNW 340 (410)
T ss_dssp SCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSC
T ss_pred ceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCC---------------ceEEEEECCCCc
Confidence 99999999996 44 5789999999999999875 456777899999
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|++++|+|++.+++ +|+.||+|++||+. .++++.++.+|...|++++|+|
T Consensus 341 v~~v~~~~~g~~l~--------s~s~D~~i~vwd~~------~~~~~~~~~~h~~~v~~l~~~~ 390 (410)
T 1vyh_C 341 VRGVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHK 390 (410)
T ss_dssp EEEEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECCSSCEEEEEECS
T ss_pred EEEEEEcCCCCEEE--------EEeCCCeEEEEECC------CCceEEEEcCCCCcEEEEEEcC
Confidence 99999999999887 77777999999998 7888999999999999999997
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-48 Score=325.77 Aligned_cols=271 Identities=21% Similarity=0.303 Sum_probs=237.5
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|.+.|++++|+| ++++|++|+.||+|++||++++ .....+..|.. .|.+++|+|++++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV 72 (304)
T ss_dssp EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred EeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCC-cEEEEEEeCCCCEEEE
Confidence 34568999999999999 8899999999999999999988 67788888887 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.|++|++||+.++. .+..+.+|...|.+++|+|++ .+
T Consensus 73 ~s~d~~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~ 111 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY 111 (304)
T ss_dssp EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred ECCCCEEEEEECCCCc----------------------------------------EEEEEeCCCCcEEEEEEcCCC-CE
Confidence 9999999999997542 346778999999999999998 78
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-cccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHS 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~ 263 (387)
+++|+.|++|++||++++.. ....+.+|...|.+++|+|.++.+|++|+.||.|++||++. ..+...+ ..|.
T Consensus 112 l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~ 184 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE 184 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred EEEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCc
Confidence 99999999999999987752 45667889999999999996678999999999999999987 5555544 4566
Q ss_pred ceEEEEEEcC--CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 264 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 264 ~~i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
..+..+.|+| +++ +|++++.|+.|++||++.. .++..+.+|...|..++|+|++++++
T Consensus 185 ~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~---- 244 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIII---- 244 (304)
T ss_dssp TCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEE----
T ss_pred CcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCC---------------ccceeeCCCCCCEEEEEECCCCCEEE----
Confidence 8899999987 556 4679999999999999875 45777889999999999999999776
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.||+|++||+. +++++.++..|...+++++|+|
T Consensus 245 ----s~s~Dg~i~iWd~~------~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 245 ----SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp ----EEETTSCEEEEETT------TCCEEEEECCSSSSEEEEEECT
T ss_pred ----EEcCCCeEEEEECC------CCceeeeccCCCccEEEEEECC
Confidence 77777999999999 7889999999999999999887
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-48 Score=327.06 Aligned_cols=271 Identities=17% Similarity=0.301 Sum_probs=237.3
Q ss_pred eeecCCCcEEEEEecCC---CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 26 KTIIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
...+|.+.|++++|+|. ++.+|+||+.|++|+|||+.... ......+.+|.. .|.+++|++++.++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~----------~~~~~~l~gh~~-~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER----------LDLQWSLEGHQL-GVVSVDISHTLPIA 95 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSS-CEEEEEECSSSSEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC----------eeeeeeeccCCC-CEEEEEECCCCCEE
Confidence 44589999999999983 46799999999999999998762 123456889998 69999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|++|++||+.++. .+..+..|...+.+++|+|++
T Consensus 96 ~s~s~D~~i~lWd~~~~~----------------------------------------~~~~~~~~~~~~~~~~~spdg- 134 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGK----------------------------------------QIKSIDAGPVDAWTLAFSPDS- 134 (321)
T ss_dssp EEEETTSEEEEEETTTTE----------------------------------------EEEEEECCTTCCCCEEECTTS-
T ss_pred EEEeCCCcEEEEECCCCC----------------------------------------EEEEEeCCCccEEEEEECCCC-
Confidence 999999999999997643 235566778889999999999
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.+|++++.||.|++||+++++ ....+..|...|.+++|+| ++++|++|+.||.|++||+++ ++.+..+.+|
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h 205 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGH 205 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCC
T ss_pred CEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEccc
Confidence 889999999999999999887 5666778889999999999 999999999999999999998 8899999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
..+|.+++|+|++++ |++++.|+.|++||++.. .....+.+|...|.+++|+|++.+++
T Consensus 206 ~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~sp~~~~l~----- 264 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHA---------------NLAGTLSGHASWVLNVAFCPDDTHFV----- 264 (321)
T ss_dssp SSCCCEEEECTTSCE-EEEECTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSEEE-----
T ss_pred CCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCc---------------ceeEEEcCCCCceEEEEECCCCCEEE-----
Confidence 999999999999995 679999999999999874 34566789999999999999999877
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.|++|++||+. +++++.++.+|.+.|++++|+|
T Consensus 265 ---s~s~D~~v~iwd~~------~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 265 ---SSSSDKSVKVWDVG------TRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp ---EEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECT
T ss_pred ---EEeCCCcEEEEeCC------CCEEEEEEcCCCCcEEEEEECC
Confidence 66777999999999 7889999999999999999987
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.7e-47 Score=322.60 Aligned_cols=277 Identities=16% Similarity=0.298 Sum_probs=239.4
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ .....+..|.. .|.+++|+|++++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~ 111 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNY 111 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECSSS-CEEEEEECTTSSE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CcceEeecCCc-cEEEEEECCCCCE
Confidence 34456778999999999999 8899999999999999999888 67778888887 6999999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
|++|+.|+.|++|++.+... .......+.+|...|.++.|++++
T Consensus 112 l~s~~~d~~v~iw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~ 155 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREG------------------------------------NVRVSRELAGHTGYLSCCRFLDDN 155 (340)
T ss_dssp EEEEETTCEEEEEETTTCSB------------------------------------SCEEEEEEECCSSCEEEEEEEETT
T ss_pred EEEEeCCCeEEEEECccCCC------------------------------------cceeEEEecCCCccEEEEEECCCC
Confidence 99999999999999875321 112235677899999999999987
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
.+++++.|+.|++||+++++ ....+.+|...|.+++|+| +++++++|+.||.|++||+++ +.++..+.+
T Consensus 156 --~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~------~~~~~~~~~ 224 (340)
T 1got_B 156 --QIVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTG 224 (340)
T ss_dssp --EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECC
T ss_pred --cEEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC------CeeEEEEcC
Confidence 48899999999999999887 6777889999999999999 999999999999999999998 889999999
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
|...|.+++|+|++.+ |++++.||.|++||++..... .......+...|++++|+|++++++
T Consensus 225 h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~---- 286 (340)
T 1got_B 225 HESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL-------------MTYSHDNIICGITSVSFSKSGRLLL---- 286 (340)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE-------------EEECCTTCCSCEEEEEECTTSSEEE----
T ss_pred CcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEE-------------EEEccCCcccceEEEEECCCCCEEE----
Confidence 9999999999999985 679999999999999874221 1111223445799999999999887
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.||.|++||+. .++.+..+.+|.+.|.+++|+|
T Consensus 287 ----~g~~d~~i~vwd~~------~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 287 ----AGYDDFNCNVWDAL------KADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp ----EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred ----EECCCCeEEEEEcc------cCcEeeEeecCCCcEEEEEEcC
Confidence 67777999999998 6778889999999999999997
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.7e-47 Score=322.10 Aligned_cols=255 Identities=19% Similarity=0.301 Sum_probs=211.8
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
....|...|.+++|+| ++ .|++|+.||+|+|||+++++... .....+.+|.+ .|++++|+|+|++|++|
T Consensus 77 ~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~H~~-~V~~v~~spdg~~l~sg 145 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLI--------VSKFCKYEHDD-IVSTVSVLSSGTQAVSG 145 (344)
T ss_dssp EEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCE--------EEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred eeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCcee--------EeeccccCCCC-CEEEEEECCCCCEEEEE
Confidence 4456788999999999 54 67899999999999999883221 12234568887 79999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|++|++||++++. .+..+.+|...|.+++|+|++..+|
T Consensus 146 s~d~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 146 SKDICIKVWDLAQQV----------------------------------------VLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp ETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECSSCTTEE
T ss_pred eCCCeEEEEECCCCc----------------------------------------EEEEEcCcCCceEEEEecCCCCCce
Confidence 999999999997542 3467889999999999999987789
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++++.|+.|++||+++++.........+...+++++|+|.++++|++|+.||.|++||+++ ++++.++.+|...
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------~~~~~~~~~h~~~ 259 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------TSCVLSSAVHSQC 259 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSC
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC------CcEEEEEcCCCCC
Confidence 9999999999999998873222223456678999999996678899999999999999998 8899999999999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|++++|+|++..+||+|+.|+.|+|||++.. .+..+.+|.+.|++++|+|+++++++++|.
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~----------------~~~~~~~H~~~V~~v~~sp~~~~llas~s~--- 320 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLS----------------ELFRSQAHRDFVRDATWSPLNHSLLTTVGW--- 320 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCC----------------EEEEECCCSSCEEEEEECSSSTTEEEEEET---
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcC---
Confidence 9999999998767889999999999999874 234568999999999999999988875554
Q ss_pred CCCCCceEEEEecCC
Q 016547 346 STGGGGTLQIWRMSD 360 (387)
Q Consensus 346 tg~~dg~i~iw~~~~ 360 (387)
||+|++|++..
T Consensus 321 ----D~~v~~w~v~~ 331 (344)
T 4gqb_B 321 ----DHQVVHHVVPT 331 (344)
T ss_dssp ----TSCEEEEECCC
T ss_pred ----CCeEEEEECCC
Confidence 59999999983
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.3e-46 Score=316.78 Aligned_cols=280 Identities=17% Similarity=0.298 Sum_probs=238.2
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+.+|.+.|++++|+| ++++|+||+.||+|++||..+. +....+..|.. .|.+++|+|++.+|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~~~-~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT------------NKEHAVTMPCT-WVMACAYAPSGCAI 121 (354)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECSSS-CCCEEEECTTSSEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CcceEEecCCC-CEEEEEECCCCCEE
Confidence 3456678999999999999 8899999999999999999887 56677778876 68999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|+.+++|++...... ........+..|...|.+++|+|++
T Consensus 122 asg~~d~~i~v~~~~~~~~~----------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~- 166 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNE----------------------------------NMAAKKKSVAMHTNYLSACSFTNSD- 166 (354)
T ss_dssp EEESTTSEEEEEECCCCTTC----------------------------------CSGGGCEEEEECSSCEEEEEECSSS-
T ss_pred EEeeCCCCEEEEEEeccccc----------------------------------cccccceeeeccCCcEEEEEEeCCC-
Confidence 99999999999998643211 0112235567899999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
..+++++.|++|++||+++++ ....+.+|...|.+++++|. ++++|++|+.||.|++||+++ ++++..+.+
T Consensus 167 ~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~------~~~~~~~~~ 238 (354)
T 2pbi_B 167 MQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS------GQCVQAFET 238 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT------CCEEEEECC
T ss_pred CEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC------CcEEEEecC
Confidence 789999999999999999887 67788899999999999873 368999999999999999998 889999999
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
|...|.+++|+|++.. |++++.|+.|++||++..... .......+...+.+++|+|++.+++
T Consensus 239 h~~~v~~v~~~p~~~~-l~s~s~D~~v~lwd~~~~~~~-------------~~~~~~~~~~~~~~~~~s~~g~~l~---- 300 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREV-------------AIYSKESIIFGASSVDFSLSGRLLF---- 300 (354)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE-------------EEECCTTCCSCEEEEEECTTSSEEE----
T ss_pred CCCCeEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEE-------------EEEcCCCcccceeEEEEeCCCCEEE----
Confidence 9999999999999985 679999999999999874221 1111223345789999999999877
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.|++|++||+. +++.+..+.+|.+.|++++|+|
T Consensus 301 ----~g~~d~~i~vwd~~------~~~~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 301 ----AGYNDYTINVWDVL------KGSRVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp ----EEETTSCEEEEETT------TCSEEEEECCCSSCEEEEEECT
T ss_pred ----EEECCCcEEEEECC------CCceEEEEECCCCcEEEEEECC
Confidence 66777999999998 6888888999999999999998
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-46 Score=316.46 Aligned_cols=300 Identities=17% Similarity=0.307 Sum_probs=231.9
Q ss_pred eeeeecCCC-cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 24 KHKTIIHPG-EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 24 ~~~~~~h~~-~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
...+.+|.+ .|++++|+| ++++||+|+.|++|+|||+++.... .......+|.. .|.+++|+|++++|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~---------~~~~~~~~h~~-~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI---------CKSVLSEGHQR-TVRKVAWSPCGNYL 76 (345)
T ss_dssp EEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE---------EEEEECSSCSS-CEEEEEECTTSSEE
T ss_pred eeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce---------eeeeeccccCC-cEEEEEECCCCCEE
Confidence 445568987 999999999 8999999999999999999876210 01122367887 79999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.|++|++|++.... ...+..+.+|...|.+++|+|++
T Consensus 77 ~s~s~D~~v~iw~~~~~~--------------------------------------~~~~~~~~~h~~~v~~v~~sp~~- 117 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDD--------------------------------------FECVTTLEGHENEVKSVAWAPSG- 117 (345)
T ss_dssp EEEETTSCEEEEEECCC---------------------------------------EEEEEEECCCSSCEEEEEECTTS-
T ss_pred EEEECCCcEEEEEccCCC--------------------------------------eEEEEEccCCCCCceEEEEeCCC-
Confidence 999999999999986431 12336678999999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 183 QEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
++|++++.|+.|++||++.... .....+..|...|.+++|+| ++.+|++++.|+.|++||.+... ..+...+.+
T Consensus 118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~ 192 (345)
T 3fm0_A 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEG 192 (345)
T ss_dssp SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECC
T ss_pred CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecC
Confidence 8999999999999999987653 23556778999999999999 99999999999999999998721 235678899
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEe
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~ 340 (387)
|...|.+++|+|++++ |++++.|+.|++||....................++..+.+ |...|.+++|+|++..++
T Consensus 193 h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~--- 268 (345)
T 3fm0_A 193 HESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA--- 268 (345)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE---
T ss_pred CCCceEEEEECCCCCE-EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE---
Confidence 9999999999999995 67999999999999755332211111111111233444555 888999999999999877
Q ss_pred cCCCCCCCCCceEEEEecCCCcccc--cch-hhhhhhccCceEEEeeecC
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRP--QDE-VLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~--~~~-~~~~~~~~~~~v~~~~f~P 387 (387)
+++.|+.|++|+........ ... ......+|...|++|+|+|
T Consensus 269 -----s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 269 -----TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp -----EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred -----EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 66667999999987421100 001 1223468999999999998
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-46 Score=317.01 Aligned_cols=281 Identities=19% Similarity=0.260 Sum_probs=219.6
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
..|...|.+++|+| +|++|++++ |+++++||................... ....|.. .|.+++|+|++ .|++|+.
T Consensus 27 ~~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~s~d~-~l~~~s~ 101 (344)
T 4gqb_B 27 ACMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCS-AGVQTEA-GVADLTWVGER-GILVASD 101 (344)
T ss_dssp SSCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCS-EEEEESS-CEEEEEEETTT-EEEEEET
T ss_pred ccccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceee-eeeccCC-CEEEEEEeCCC-eEEEEEC
Confidence 35788999999999 889999887 678888874321100000001111122 2233444 59999999985 6889999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
||+|++||++++..... ....+.+|.+.|++++|+|++ ++|++
T Consensus 102 dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~H~~~V~~v~~spdg-~~l~s 144 (344)
T 4gqb_B 102 SGAVELWELDENETLIV------------------------------------SKFCKYEHDDIVSTVSVLSSG-TQAVS 144 (344)
T ss_dssp TSEEEEEEECTTSSCEE------------------------------------EEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred CCEEEEEeccCCCceeE------------------------------------eeccccCCCCCEEEEEECCCC-CEEEE
Confidence 99999999986533211 113356899999999999999 89999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec--cccce
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAA 265 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~~ 265 (387)
|+.|+.|++||+++++ .+..+.+|...|++++|+|.+..+|++++.||.|++||+++ +++...+. .+...
T Consensus 145 gs~d~~i~iwd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~~~~~~~ 216 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC------PKPASQIGCSAPGYL 216 (344)
T ss_dssp EETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS------SSCEEECC----CCC
T ss_pred EeCCCeEEEEECCCCc--EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc------cceeeeeecceeecc
Confidence 9999999999999887 67888899999999999993346889999999999999998 77777764 45567
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
+.+++|+|++..+|++|+.||.|++||+++. +++..+.+|...|++++|+|++..++++
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------------~~~~~~~~h~~~v~~v~fsp~g~~~las------ 275 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKST---------------SCVLSSAVHSQCVTGLVFSPHSVPFLAS------ 275 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC-----------------CCEEEECCSSCEEEEEECSSSSCCEEE------
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCCC---------------cEEEEEcCCCCCEEEEEEccCCCeEEEE------
Confidence 9999999987767889999999999999875 3466778999999999999998766664
Q ss_pred CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|+.|++|+|||+. +++++ .+.+|.+.|++++|+|
T Consensus 276 -gs~D~~i~vwd~~------~~~~~-~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 276 -LSEDCSLAVLDSS------LSELF-RSQAHRDFVRDATWSP 309 (344)
T ss_dssp -EETTSCEEEECTT------CCEEE-EECCCSSCEEEEEECS
T ss_pred -EeCCCeEEEEECC------CCcEE-EEcCCCCCEEEEEEeC
Confidence 4555999999998 56554 5789999999999997
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-46 Score=322.41 Aligned_cols=288 Identities=17% Similarity=0.341 Sum_probs=235.4
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++ +....+..|.. .|.+++|+|++++|
T Consensus 58 ~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~------------~~~~~~~~h~~-~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS------------QKTHAIKLHCP-WVMECAFAPNGQSV 123 (380)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT------------EEEEEEECCCT-TCCCCEECTTSSEE
T ss_pred EeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------ccceEEecCCC-CEEEEEECCCCCEE
Confidence 3456678999999999999 8899999999999999999888 67788899987 68999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.|+.|++||+....... ........+.+|.+.|.++.|.|+++
T Consensus 124 as~~~d~~v~iw~~~~~~~~~---------------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~ 170 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRD---------------------------------GNMPVSRVLTGHKGYASSCQYVPDQE 170 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCC---------------------------------CSSTTCCBCCCCSSCCCCCBCCSSSS
T ss_pred EEeeCCCcEEEEECCCCcccc---------------------------------CCccceeeccCCCcceEEEEEecCCC
Confidence 999999999999997532110 01122356788999999999999876
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
..|++|+.|++|++||+++++ ....+ .+|...|.++++++.++++|++|+.||.|++||++.. ...+.
T Consensus 171 ~~l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~ 243 (380)
T 3iz6_a 171 TRLITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----SRAVR 243 (380)
T ss_dssp SCEEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----CCCCE
T ss_pred CEEEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----CcceE
Confidence 789999999999999999887 34443 5788999999998768899999999999999999852 57888
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
.+.+|...|.+++|+|++++ |++++.||.|++||++............ .....+...|++++|+|++++++
T Consensus 244 ~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 244 TYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREP--------DRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp EECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEEEECCCC--------SSSCCSSCSCSEEEECSSSSEEE
T ss_pred EECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEEEecccc--------cccccccCceEEEEECCCCCEEE
Confidence 99999999999999999995 6799999999999999853221100000 00012234589999999999888
Q ss_pred EEecCCCCCCCCCceEEEEecCCCcccccchhhhhh----hccCceEEEeeecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL----EKFKAHVISCTSKP 387 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~~v~~~~f~P 387 (387)
+|+.||.|++||+. .++.+..+ .+|.+.|++++|+|
T Consensus 315 --------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 315 --------AGYSNGDCYVWDTL------LAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp --------EECTTSCEEEEETT------TCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred --------EEECCCCEEEEECC------CCceEEEEecccCCCCCceEEEEECC
Confidence 77778999999998 56655554 68999999999997
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-45 Score=315.73 Aligned_cols=275 Identities=16% Similarity=0.267 Sum_probs=218.8
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecC------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTD------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
..|.+.|++++|+| +|++||+|+. |+.|++|+..++.... .......+|.. .|++++|+|++++
T Consensus 39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------~~~~~~~~~~~-~V~~~~~s~d~~~ 108 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------SLCTAGVQTEA-GVTDVAWVSEKGI 108 (357)
T ss_dssp -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CG--------GGCSEEEECSS-CEEEEEEETTTEE
T ss_pred ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcce--------eEecccCCCCC-CEEEEEEcCCCCE
Confidence 46999999999999 9999999997 7789999987764322 22334556776 5999999999865
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
++++.||+|++||+.++..... ......+|...|++++|+|++
T Consensus 109 -l~~s~dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 109 -LVASDSGAVELWEILEKESLLV------------------------------------NKFAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp -EEEETTSCEEEC--------CC------------------------------------CCEEECCCSSCEEEEEECSSS
T ss_pred -EEEECCCEEEEeeccccceeEE------------------------------------EeeccCCCCCCEEEEEECCCC
Confidence 4567799999999986532211 113445799999999999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe--
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-- 259 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-- 259 (387)
.+|++++.|+.|++||+++++ ....+..|...|++++|+|....++++++.||.|++||+++ ++++..+
T Consensus 152 -~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~------~~~~~~~~~ 222 (357)
T 4g56_B 152 -TQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK------PKPATRIDF 222 (357)
T ss_dssp -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS------SSCBCBCCC
T ss_pred -CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC------Cceeeeeee
Confidence 889999999999999999887 67788899999999999993346899999999999999998 5555443
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
..|...+.+++|+|++..+|++|+.|+.|++||++.. .....+.+|...|++++|+|++..++++
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---------------~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---------------DSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---------------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCC---------------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 4567789999999997778899999999999999875 3356678899999999999998776664
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+ +.|++|+|||++ +++++..+ +|.+.|++|+|+|
T Consensus 288 g-------s~D~~i~iwd~~------~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 288 I-------SEDCTVAVLDAD------FSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp E-------ETTSCEEEECTT------SCEEEEEC-CCSSCEEEEEECS
T ss_pred E-------eCCCEEEEEECC------CCcEeEEC-CCCCCEEEEEEeC
Confidence 4 455999999998 67776654 7999999999998
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-44 Score=302.83 Aligned_cols=272 Identities=23% Similarity=0.398 Sum_probs=233.0
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++ +....+.+|.. .|.+++|+|++++
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~ 79 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG------------KFEKTISGHKL-GISDVAWSSDSNL 79 (312)
T ss_dssp EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSE
T ss_pred eeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc------------ccchhhccCCC-ceEEEEEcCCCCE
Confidence 33456678999999999999 8899999999999999999887 66778889987 6999999999999
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
|++++.|+.|++||++++. .+..+.+|...|.+++|+|++
T Consensus 80 l~s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGK----------------------------------------CLKTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp EEEEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS
T ss_pred EEEECCCCEEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEcCCC
Confidence 9999999999999997532 336678899999999999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 260 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~- 260 (387)
.++++++.|+.|++||+++++ ....+..|...|.+++|+| ++++|++++.||.|++||+++ ++.+..+.
T Consensus 120 -~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~ 189 (312)
T 4ery_A 120 -NLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLID 189 (312)
T ss_dssp -SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECC
T ss_pred -CEEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEec
Confidence 889999999999999999887 6777888999999999999 999999999999999999998 77776654
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee--EEEEc-cCCCeEE
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWN-ASDPWTV 337 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~-~~~~~l~ 337 (387)
.+...+..++|+|++++ +++++.|+.|++||++.. ..+..+.+|...+. ...++ +++.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKG---------------KCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp SSCCCEEEEEECTTSSE-EEEEETTTEEEEEETTTT---------------EEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred cCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------cEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 45678999999999996 568999999999999875 33555566665432 23444 4555555
Q ss_pred EEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.||.|++||+. +++++.++.+|.+.|.+++|+|
T Consensus 254 --------sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 254 --------SGSEDNLVYIWNLQ------TKEIVQKLQGHTDVVISTACHP 289 (312)
T ss_dssp --------ECCTTSCEEEEETT------TCCEEEEECCCSSCEEEEEECS
T ss_pred --------EECCCCEEEEEECC------CchhhhhhhccCCcEEEEeecC
Confidence 77788999999999 7888999999999999999998
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-44 Score=310.31 Aligned_cols=255 Identities=22% Similarity=0.340 Sum_probs=207.1
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
....+|.+.|.+++|+| ++.+ ++++.||+|+|||+.+++... .......+|.+ .|++++|+|++++|++
T Consensus 88 ~~~~~~~~~V~~~~~s~-d~~~-l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~-~V~~v~~spdg~~l~s 156 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVS-EKGI-LVASDSGAVELWEILEKESLL--------VNKFAKYEHDD-IVKTLSVFSDGTQAVS 156 (357)
T ss_dssp SEEEECSSCEEEEEEET-TTEE-EEEETTSCEEEC--------C--------CCCEEECCCSS-CEEEEEECSSSSEEEE
T ss_pred cccCCCCCCEEEEEEcC-CCCE-EEEECCCEEEEeeccccceeE--------EEeeccCCCCC-CEEEEEECCCCCEEEE
Confidence 34567999999999999 6655 466789999999998873221 22344567887 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.|++|++||++++. .+..+.+|...|++++|+|+++.+
T Consensus 157 gs~dg~v~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 157 GGKDFSVKVWDLSQKA----------------------------------------VLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTCSSC
T ss_pred EeCCCeEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEccCCCce
Confidence 9999999999997543 336678899999999999998678
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++++.||.|++||+++++.........+...+++++|+|..+.+|++|+.|+.|++||+++ ++++..+.+|..
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~ 270 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQ 270 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSS
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEeccce
Confidence 99999999999999998874434445567788999999995567899999999999999998 889999999999
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc-CCCeEEEEecCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVVSVSDD 343 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~s~s~d 343 (387)
.|++++|+|++..+||+++.|+.|+|||++.. + +....+|.+.|++++|+| ++.+|+
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~-~~~~~~H~~~V~~vafsP~d~~~l~------ 328 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------E-VFRDLSHRDFVTGVAWSPLDHSKFT------ 328 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------E-EEEECCCSSCEEEEEECSSSTTEEE------
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------c-EeEECCCCCCEEEEEEeCCCCCEEE------
Confidence 99999999998767889999999999999874 2 233458999999999999 555555
Q ss_pred CCCCCCCceEEEEecCC
Q 016547 344 CDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~ 360 (387)
|||.||+|++|++..
T Consensus 329 --s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 329 --TVGWDHKVLHHHLPS 343 (357)
T ss_dssp --EEETTSCEEEEECC-
T ss_pred --EEcCCCeEEEEECCC
Confidence 566669999999983
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=302.93 Aligned_cols=246 Identities=19% Similarity=0.357 Sum_probs=221.1
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.+.+|...|.+++|++ ++.++++|+.|++|++||+.++ +.+..+..|.. .+.+++|+|++++|+++
T Consensus 75 ~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~------------~~~~~~~~~~~-~~~~~~~spdg~~l~~g 140 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENG------------KQIKSIDAGPV-DAWTLAFSPDSQYLATG 140 (321)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCTT-CCCCEEECTTSSEEEEE
T ss_pred eeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CEEEEEeCCCc-cEEEEEECCCCCEEEEE
Confidence 4568999999999999 8899999999999999999988 66777888876 57899999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.||.|++|+++++. ....+..|...|.+++|+|++ ++|
T Consensus 141 ~~dg~v~i~~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~spdg-~~l 179 (321)
T 3ow8_A 141 THVGKVNIFGVESGK----------------------------------------KEYSLDTRGKFILSIAYSPDG-KYL 179 (321)
T ss_dssp CTTSEEEEEETTTCS----------------------------------------EEEEEECSSSCEEEEEECTTS-SEE
T ss_pred cCCCcEEEEEcCCCc----------------------------------------eeEEecCCCceEEEEEECCCC-CEE
Confidence 999999999997542 224566788899999999999 899
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++++.||.|++||+++++ ....+.+|...|++++|+| ++++|++|+.||.|++||++. ...+..+.+|...
T Consensus 180 asg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH------ANLAGTLSGHASW 250 (321)
T ss_dssp EEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTT------CCEEEEECCCSSC
T ss_pred EEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCC------cceeEEEcCCCCc
Confidence 999999999999999887 6777889999999999999 999999999999999999998 8888999999999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|.+++|+|++++ |++++.|+.|++||+++. .++..+.+|...|.+++|+|++.+|+
T Consensus 251 v~~~~~sp~~~~-l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l~-------- 306 (321)
T 3ow8_A 251 VLNVAFCPDDTH-FVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKIV-------- 306 (321)
T ss_dssp EEEEEECTTSSE-EEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEEE--------
T ss_pred eEEEEECCCCCE-EEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEEE--------
Confidence 999999999996 679999999999999875 45677889999999999999999877
Q ss_pred CCCCCceEEEEecC
Q 016547 346 STGGGGTLQIWRMS 359 (387)
Q Consensus 346 tg~~dg~i~iw~~~ 359 (387)
+++.||+|++||+.
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 67777999999974
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.5e-44 Score=309.35 Aligned_cols=282 Identities=21% Similarity=0.356 Sum_probs=227.1
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-----------------
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----------------- 86 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----------------- 86 (387)
..+.++|.+.|.+++|+| ++++||+|+ ++.+++|++.+++. ...+..|.
T Consensus 57 ~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~------------~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL------------VARLSDDSAANKDPENLNTSSSPSS 122 (393)
T ss_dssp EEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE------------EEEECC-----------------CC
T ss_pred eEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCE------------EEEecCccccccccccccccccCCC
Confidence 345568999999999999 889999986 68999999998843 33333222
Q ss_pred CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547 87 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 166 (387)
Q Consensus 87 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (387)
...|.+++|+|++++|++|+.|+.|++||+.++. .+..+.
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~----------------------------------------~~~~~~ 162 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK----------------------------------------IVMILQ 162 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------------------------------------EEEEEC
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------------------------------------EEEEEc
Confidence 1248999999999999999999999999997532 235678
Q ss_pred CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
+|...|.+++|+|++ ..|++++.|+.|++||+++++ ....+ .+...+.+++|+|.++++|++|+.||.|++||+++
T Consensus 163 ~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 163 GHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 899999999999998 789999999999999999876 33333 46678999999997789999999999999999988
Q ss_pred CCCCCCCCceEEe-------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 247 LTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 247 ~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
+..+..+ .+|...|.+++|+|++++ |++++.|+.|++||++......... ......+...+.+
T Consensus 239 ------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~---~~~~~~~~~~~~~ 308 (393)
T 1erj_A 239 ------GFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSK---TPNSGTCEVTYIG 308 (393)
T ss_dssp ------CCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC------------------CEEEEEEC
T ss_pred ------CcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECCCCCCccccc---CCCCCcceEEEec
Confidence 6666665 578999999999999996 5799999999999998743321110 0011234566789
Q ss_pred CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|...|.+++|+|++.+++ +|+.||.|++||+. +++++..+.+|.+.|.+++|+|
T Consensus 309 h~~~v~~~~~~~~~~~l~--------sgs~D~~v~iwd~~------~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp CSSCEEEEEECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECS
T ss_pred ccCcEEEEEECCCCCEEE--------EEeCCCeEEEEECC------CCeEEEEECCCCCCEEEEEecC
Confidence 999999999999999877 77777999999999 7888899999999999999875
No 15
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-43 Score=295.89 Aligned_cols=258 Identities=19% Similarity=0.304 Sum_probs=212.0
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~ 103 (387)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+... ..+.+..+.+|.+ .|++++|+++ +++|+
T Consensus 4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~----------~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 71 (297)
T ss_dssp ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSS----------CBCCCEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCC----------CcEEEEEEccccC-CeEEEEecCCCcCCEEE
Confidence 4458999999999999 8999999999999999999753 1156788999998 7999999874 89999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 181 (387)
+|+.|++|++||++++.. ..+..+..|...|.+++|+|+ +
T Consensus 72 s~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp EEETTTEEEEEEBSSSCB--------------------------------------CCCEEECCCSSCEEEEEECCGGGC
T ss_pred EEcCCCEEEEEEcCCCce--------------------------------------EEEEEeecCCCceeEEEeCcCCCC
Confidence 999999999999975321 122456789999999999997 5
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC-------------CCeEEEeeCCCeEEEEEeccCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-------------DNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
.+|++++.|+.|++||++.........+.+|...|.+++|+| + +++|++|+.|+.|++||++.
T Consensus 114 -~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-- 189 (297)
T 2pm7_B 114 -PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-- 189 (297)
T ss_dssp -SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTSCEEEEEEET--
T ss_pred -cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcC--
Confidence 789999999999999998764323456678999999999999 5 57999999999999999987
Q ss_pred CCCCCC----ceEEeccccceEEEEEEcCCC--CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547 249 SNGVGS----PINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 322 (387)
Q Consensus 249 ~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
.. ....+.+|...|.+++|+|++ ..+||+++.|+.|+|||++....... ........|..
T Consensus 190 ----~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~----------~~~~~~~~~~~ 255 (297)
T 2pm7_B 190 ----DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPD 255 (297)
T ss_dssp ----TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSS
T ss_pred ----CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc----------eeeeecccCCC
Confidence 44 566788999999999999986 34678999999999999986321100 01111246788
Q ss_pred CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.|.+++|+|++++|+ +++.||+|++|+..
T Consensus 256 ~v~~~~~s~~g~~la--------s~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWSLSGNVLA--------LSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred cEEEEEECCCCCEEE--------EEcCCCcEEEEEEC
Confidence 999999999999877 66777999999987
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-44 Score=313.95 Aligned_cols=247 Identities=20% Similarity=0.394 Sum_probs=220.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|.+.|++++|+| ++++|++|+.||+|++||+.+. +.+..+.+|.. .|.+++|+|++++|++
T Consensus 144 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~------------~~~~~~~~h~~-~V~~v~~~p~~~~l~s 209 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIMPNGDHIVS 209 (410)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEECSSSSEEEE
T ss_pred EEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC------------ceeEEEcCCCC-CEEEEEEeCCCCEEEE
Confidence 34568999999999999 8899999999999999999887 66777889987 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.|++|++||+.++. .+..+.+|...|.++.++|++ .+
T Consensus 210 ~s~D~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~g-~~ 248 (410)
T 1vyh_C 210 ASRDKTIKMWEVQTGY----------------------------------------CVKTFTGHREWVRMVRPNQDG-TL 248 (410)
T ss_dssp EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECTTS-SE
T ss_pred EeCCCeEEEEECCCCc----------------------------------------EEEEEeCCCccEEEEEECCCC-CE
Confidence 9999999999997542 336678899999999999998 89
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--------------------CCeEEEeeCCCeEEEEEe
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--------------------DNLILTGSADNSVRMFDR 244 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~l~~~~~dg~i~~~d~ 244 (387)
+++|+.|+.|++||+++++ ....+..|...|.+++|+| + +.+|++|+.||.|++||+
T Consensus 249 l~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~ 325 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325 (410)
T ss_dssp EEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred EEEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999999887 6677889999999999998 5 568999999999999999
Q ss_pred ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (387)
++ +.++..+.+|...|.+++|+|++++ |++++.|+.|++||+... .++..+.+|...|
T Consensus 326 ~~------~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~~v 383 (410)
T 1vyh_C 326 ST------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTLNAHEHFV 383 (410)
T ss_dssp TT------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEEECCSSCE
T ss_pred CC------CceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------ceEEEEcCCCCcE
Confidence 98 8899999999999999999999996 569999999999999874 3456678999999
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++++|+|++++++ ||+.||+|++|+++
T Consensus 384 ~~l~~~~~~~~l~--------sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 384 TSLDFHKTAPYVV--------TGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSSSSCEE--------EEETTSEEEEEC--
T ss_pred EEEEEcCCCCEEE--------EEeCCCcEEEEeCC
Confidence 9999999999887 77778999999864
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-43 Score=297.65 Aligned_cols=274 Identities=16% Similarity=0.302 Sum_probs=226.0
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.+|.+.|++++|+|.++++|++|+.|++|++|++....... ..++..+.+|.. .|.+++|+|++++|+
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~~~~s~dg~~l~ 81 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-------GVPVRSFKGHSH-IVQDCTLTADGAYAL 81 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-------EEEEEEEECCSS-CEEEEEECTTSSEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-------cccceEEeCCcc-cEEEEEECCCCCEEE
Confidence 445668999999999999667899999999999999997542111 135678899998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.|++|++||+.++. .+..+.+|...|.+++|+|++ .
T Consensus 82 s~s~D~~v~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~ 120 (319)
T 3frx_A 82 SASWDKTLRLWDVATGE----------------------------------------TYQRFVGHKSDVMSVDIDKKA-S 120 (319)
T ss_dssp EEETTSEEEEEETTTTE----------------------------------------EEEEEECCSSCEEEEEECTTS-C
T ss_pred EEeCCCEEEEEECCCCC----------------------------------------eeEEEccCCCcEEEEEEcCCC-C
Confidence 99999999999997542 336678999999999999998 8
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-----CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
++++++.|+.|++||++.. ....+.+|...|.++++.|. ++..+++++.|+.|++||++. .+....
T Consensus 121 ~l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~ 191 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEAD 191 (319)
T ss_dssp EEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEE
T ss_pred EEEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhhee
Confidence 8999999999999999743 46677889999999999982 234899999999999999998 788889
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+.+|...|.+++|+|++++ |++++.||.|++||+... ..+..+.. ...|.+++|+|++.++++
T Consensus 192 ~~~h~~~v~~~~~sp~g~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 192 FIGHNSNINTLTASPDGTL-IASAGKDGEIMLWNLAAK---------------KAMYTLSA-QDEVFSLAFSPNRYWLAA 254 (319)
T ss_dssp ECCCCSCEEEEEECTTSSE-EEEEETTCEEEEEETTTT---------------EEEEEEEC-CSCEEEEEECSSSSEEEE
T ss_pred ecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------cEEEEecC-CCcEEEEEEcCCCCEEEE
Confidence 9999999999999999995 679999999999999874 23444443 468999999999987663
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhh--------hhccCceEEEeeecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--------LEKFKAHVISCTSKP 387 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~f~P 387 (387)
+. ++.+++|++.. +..+.. ...|...|.+++|+|
T Consensus 255 ~~---------~~~i~v~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 255 AT---------ATGIKVFSLDP------QYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp EE---------TTEEEEEEETT------EEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred Ec---------CCCcEEEEeCc------CeeeeccCccccccccCcCcceeEEEECC
Confidence 22 24699999983 333222 234677899999998
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-43 Score=300.88 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=220.0
Q ss_pred eeeeeecCCCcEEEEEe-----cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 23 KKHKTIIHPGEVNRIRE-----LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~-----~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
....+.+|.+.|++++| ++.++++|++|+.|++|++||+...+.... ...+...+.+|.. .|.+++|+|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~l~~h~~-~V~~~~~~~ 86 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALTGHNH-FVSDLALSQ 86 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEEECCCSS-CEEEEEECS
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccchhccCCC-ceEEEEECC
Confidence 34456789999999999 666889999999999999999976532110 1134567889998 799999999
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
++.+|++|+.|++|++||++++. .+..+.+|...|.+++|
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~ 126 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGT----------------------------------------TYKRFVGHQSEVYSVAF 126 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSC----------------------------------------EEEEEECCCSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCc----------------------------------------EEEEEcCCCCcEEEEEE
Confidence 99999999999999999997542 33667889999999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC----------CeEEEeeCCCeEEEEEeccC
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----------NLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~l~~~~~dg~i~~~d~~~~ 247 (387)
+|++ .+|++++.|+.|++||+.............|...|.+++|+| ++ .+|++++.||.|++||..
T Consensus 127 sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-- 202 (343)
T 2xzm_R 127 SPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-- 202 (343)
T ss_dssp CSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT--
T ss_pred CCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC--
Confidence 9998 789999999999999997432111111236888999999999 65 789999999999999943
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
......+.+|...|.+++|+|++++ |++++.||.|++||+...... ... ..+...|.++
T Consensus 203 -----~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~--------------~~~-~~~~~~v~~v 261 (343)
T 2xzm_R 203 -----FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYP--------------QRE-FDAGSTINQI 261 (343)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSC--------------SEE-EECSSCEEEE
T ss_pred -----CceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccc--------------cee-ecCCCcEEEE
Confidence 5677888999999999999999996 679999999999999653221 111 1245579999
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccc----cchh---hhhhhccCceEEEeeecC
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP----QDEV---LAELEKFKAHVISCTSKP 387 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~----~~~~---~~~~~~~~~~v~~~~f~P 387 (387)
+|+|++.+++ + +.|+.|++|++....... .... .....+|...|.+++|+|
T Consensus 262 ~~sp~~~~la-~--------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 262 AFNPKLQWVA-V--------GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp EECSSSCEEE-E--------EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred EECCCCCEEE-E--------ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 9999987543 2 234789999997421110 0000 112237888999999997
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-43 Score=298.55 Aligned_cols=287 Identities=17% Similarity=0.271 Sum_probs=217.4
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE-ec-cCCCceEEEEECCCCCEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TG-HQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~v~~~~~~~~~~~l 102 (387)
..+.+|.++|++++|+| + +||+|+.||+|++||+..+. ......+ .+ |.. .|.+++|+|++++|
T Consensus 8 ~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~----------~~~~~~~~~~~h~~-~v~~v~~sp~~~~l 73 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDD----------FTLIDVLDETAHKK-AIRSVAWRPHTSLL 73 (330)
T ss_dssp EEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSC----------CEEEEEECTTCCCS-CEEEEEECTTSSEE
T ss_pred eeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCC----------eEEEEEEecCCccC-CEEEEEECCCCCEE
Confidence 45568999999999998 4 99999999999999998751 1233344 34 776 79999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.|++|++||+...... ......+..+.+|...|.+++|+|++
T Consensus 74 as~s~D~~v~iw~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g- 119 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADR---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDG- 119 (330)
T ss_dssp EEEETTSCEEEEEC----------------------------------------CCCEEEEEEC----CEEEEEECTTS-
T ss_pred EEEeCCCcEEEEEcccCcCc---------------------------------cccceeEEEEcCCCCcEEEEEECCCC-
Confidence 99999999999998642100 01123346678999999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCC--CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 183 QEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
.+|++|+.|+.|++||++... ......+.+|...|.+++|+| ++.+|++|+.|+.|++||.+... .+++..+.
T Consensus 120 ~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~ 194 (330)
T 2hes_X 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVLN 194 (330)
T ss_dssp CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEEC
T ss_pred CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEcc
Confidence 899999999999999995432 224566788999999999999 99999999999999999998621 26788899
Q ss_pred cccceEEEEEEcCC--CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEE
Q 016547 261 GHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 261 ~~~~~i~~~~~~~~--~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 337 (387)
+|...|.+++|+|+ +. +|++++.|+.|++||++....... ........+.+ |...|.+++|++++ .++
T Consensus 195 ~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQ-------QEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp CCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSC-------EEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred CCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCcccc-------ceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 99999999999998 44 478999999999999976421100 00122333444 88999999999754 454
Q ss_pred EEecCCCCCCCCCceEEEEecCCCcccccc--hhh-hhhhccCc-eEEEeeecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVL-AELEKFKA-HVISCTSKP 387 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~--~~~-~~~~~~~~-~v~~~~f~P 387 (387)
+|+.||+|++|+.. .+ +.+ ..+.+|.. .|.+++|+|
T Consensus 266 --------s~~~dg~v~iw~~~------~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 266 --------SVGADGVLAVYEEV------DGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp --------EEETTSCEEEEEEE------TTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred --------EEeCCCEEEEEEcC------CCceEEEeccccccccceEEEEEEec
Confidence 56666999999987 33 222 23457877 899999987
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-43 Score=323.77 Aligned_cols=318 Identities=18% Similarity=0.263 Sum_probs=243.8
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
.+.+.+.+++|+| ++++||+++ ++.|++|++.++ .....+.+|.. .|++++|+|+|++|++|+.|
T Consensus 16 ~~~g~~~~~~~sp-dg~~l~~~~-~~~v~l~~~~~~------------~~~~~~~~h~~-~v~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 16 TARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSL------------TDTEIYTEHSH-QTTVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp CCTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCS------------SCCEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred cccCceeEEeeCC-CCCEEEeCC-CCEEEEecCCCc------------ccCeEecCCCC-ceEEEEECCCCcEEEEEeCC
Confidence 3578899999999 889999987 569999999877 67788999998 69999999999999999999
Q ss_pred CeEEEEEcCCCcCccc--cC----CCcccCCCCCCceeccCCC--CCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 109 KSVVLWSIQDHITSSA--TD----PATAKSAGSSGSIIKQSPK--PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
++|++||+.++..... .. ..........+..+..... ...+.+.+|+ .......+.+|...|.+++|+|+
T Consensus 81 ~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred CCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCC
Confidence 9999999975432211 10 0000111111111111111 1112445555 34456678899999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
++..|++++.|++|++||....+ ....+.+|...|++++|+| ++++|++|+.|+.|++||+.+ ++.+..+.
T Consensus 159 ~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~------g~~~~~~~ 229 (611)
T 1nr0_A 159 RPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFE 229 (611)
T ss_dssp SSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECB
T ss_pred CCeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCC------CcEeeeec
Confidence 85579999999999999987765 5677889999999999999 999999999999999999988 77777774
Q ss_pred -------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC--------------------------
Q 016547 261 -------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-------------------------- 307 (387)
Q Consensus 261 -------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------------------------- 307 (387)
+|...|.+++|+|++++ |++++.|+.|++||+++............
T Consensus 230 ~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 230 DDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp CTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred cccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 79999999999999995 67999999999999987433221110000
Q ss_pred --CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh-hccCceEEEee
Q 016547 308 --NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCT 384 (387)
Q Consensus 308 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 384 (387)
.........+.+|...|++++|+|++++++ +++.|++|++||+. ++++...+ .+|...|.+++
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--------s~s~D~~v~~Wd~~------~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLF--------SADAEGHINSWDIS------TGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETT------TCCEEECSSCSCSSCEEEEE
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--------EEeCCCcEEEEECC------CCceeeecccCCcceEEEEE
Confidence 001123455678999999999999999887 77777999999999 56655554 57999999999
Q ss_pred ecC
Q 016547 385 SKP 387 (387)
Q Consensus 385 f~P 387 (387)
|+|
T Consensus 375 ~s~ 377 (611)
T 1nr0_A 375 TTS 377 (611)
T ss_dssp ECT
T ss_pred ECC
Confidence 875
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-43 Score=324.00 Aligned_cols=311 Identities=14% Similarity=0.188 Sum_probs=234.9
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-------ccCCCceEEEEECC
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-------GHQDNAEFALAMCP 97 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~v~~~~~~~ 97 (387)
..+.+|.+.|++++|+| ++++||+|+.|++|++||+.++ +....+. +|.+ .|.+++|+|
T Consensus 184 ~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g------------~~~~~~~~~~~~~~~h~~-~V~~v~~sp 249 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG------------TKTGVFEDDSLKNVAHSG-SVFGLTWSP 249 (611)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEECBCTTSSSCSSSS-CEEEEEECT
T ss_pred eeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC------------cEeeeeccccccccccCC-CEEEEEECC
Confidence 44567999999999999 8999999999999999999887 3444442 6887 799999999
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCC-----CCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG-----SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 172 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 172 (387)
++++|++++.|++|++||+.++............... .... .......++.+.+|+.........+.+|...|
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v 327 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVRYGHNKAI 327 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS--CEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC--EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence 9999999999999999999876544332211000000 0000 01111234556666666666677788999999
Q ss_pred EEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeE--------------------------------------------
Q 016547 173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------------------------------------------- 208 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------------------------- 208 (387)
++++|+|++ .+|++++.|+.|++||+.+++.....
T Consensus 328 ~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 328 TALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence 999999998 88999999999999998765310000
Q ss_pred ------------------------------------EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547 209 ------------------------------------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252 (387)
Q Consensus 209 ------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 252 (387)
....|...+.+++|+| ++++|++|+.|+.|++||+..
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~------ 479 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSG------ 479 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEET------
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccC------
Confidence 0001234578899999 999999999999999999986
Q ss_pred CCc--eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 253 GSP--INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 253 ~~~--~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
... +.. .+|...|++++|+|++++ |++++.|+.|++||+....+... .....+|...|++++|+
T Consensus 480 ~~~~~~~~-~~h~~~v~~v~fspdg~~-las~s~d~~v~~w~~~~~~~~~~------------~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 480 ASVSEVKT-IVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFELAH------------TNSWTFHTAKVACVSWS 545 (611)
T ss_dssp TEEEEEEE-EECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEESC------------CCCCCCCSSCEEEEEEC
T ss_pred Cceeeeec-cCCCCceEEEEECCCCCE-EEEEcCCCCEEEEEcCCCCceee------------eeeeeecccceeEEEEC
Confidence 322 333 679999999999999996 67999999999999986322110 00124599999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccch-hh-hhhhcc-CceEEEeeecC
Q 016547 331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE-VL-AELEKF-KAHVISCTSKP 387 (387)
Q Consensus 331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~-~~-~~~~~~-~~~v~~~~f~P 387 (387)
|++++|+ +|+.|++|++|++. .++ .+ ..+.+| .+.|.+++|+|
T Consensus 546 pdg~~la--------sgs~D~~v~lW~~~------~~~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 546 PDNVRLA--------TGSLDNSVIVWNMN------KPSDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp TTSSEEE--------EEETTSCEEEEETT------CTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred CCCCEEE--------EEECCCcEEEEECC------CcccccchhhccCcccCeeEEEEcC
Confidence 9999887 77778999999998 333 33 567789 89999999986
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-43 Score=297.12 Aligned_cols=267 Identities=18% Similarity=0.312 Sum_probs=214.3
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.+|.+.|.+++|+| ++++||+|+.|++|++||+.... ......+.+|.. .|.+++|+|++++|++|+.
T Consensus 58 ~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~----------~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD----------FECVTTLEGHEN-EVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp SSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-----------EEEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred cccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC----------eEEEEEccCCCC-CceEEEEeCCCCEEEEEEC
Confidence 57999999999999 88999999999999999987651 134677889987 7999999999999999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
|++|++||+.+... ...+..+.+|...|.+++|+|++ .+|++
T Consensus 126 D~~v~iwd~~~~~~-------------------------------------~~~~~~~~~h~~~v~~~~~~p~~-~~l~s 167 (345)
T 3fm0_A 126 DKSVWVWEVDEEDE-------------------------------------YECVSVLNSHTQDVKHVVWHPSQ-ELLAS 167 (345)
T ss_dssp TSCEEEEEECTTSC-------------------------------------EEEEEEECCCCSCEEEEEECSSS-SCEEE
T ss_pred CCeEEEEECCCCCC-------------------------------------eEEEEEecCcCCCeEEEEECCCC-CEEEE
Confidence 99999999975321 12235677899999999999998 78999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC---------CCCceEE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---------VGSPINK 258 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---------~~~~~~~ 258 (387)
++.|+.|++||.+..+......+.+|...|++++|+| ++++|++|+.||.|++||........ ..+++..
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 9999999999998876445567889999999999999 99999999999999999986432110 0123444
Q ss_pred ecc-ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce-eeeeeccCCCCeeEEEEccCCCeE
Q 016547 259 FEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRDKVVDFHWNASDPWT 336 (387)
Q Consensus 259 ~~~-~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l 336 (387)
+.+ |...|.+++|+|++.. |++++.|+.|++|+......... .... ......+|...|++++|+|+++.+
T Consensus 247 ~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDPNSDPQQ-------PTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp ECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECTTSCTTS-------CCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred ecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCCCCCcce-------eeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 544 8889999999999985 67999999999999876432110 0001 122346899999999999998766
Q ss_pred EEEecCCCCCCCCCceEEEEecCC
Q 016547 337 VVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 337 ~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+++++ .||+|++|++..
T Consensus 319 laS~s-------~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 319 LASCS-------DDGEVAFWKYQR 335 (345)
T ss_dssp EEEEE-------TTSCEEEEEECC
T ss_pred EEEcC-------CCCcEEEEEecC
Confidence 66554 559999999993
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.9e-42 Score=290.27 Aligned_cols=248 Identities=21% Similarity=0.320 Sum_probs=213.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.....|.+.|.+++|+| ++++|++|+.|+.|++|++.+.+. .......+.+|.+ .|.++.|++++. +++
T Consensus 91 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s 159 (340)
T 1got_B 91 HAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREG--------NVRVSRELAGHTG-YLSCCRFLDDNQ-IVT 159 (340)
T ss_dssp EEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSB--------SCEEEEEEECCSS-CEEEEEEEETTE-EEE
T ss_pred eEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCC--------cceeEEEecCCCc-cEEEEEECCCCc-EEE
Confidence 34457999999999999 889999999999999999987631 1134567888987 799999998775 889
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|++|++||++++. .+..+.+|...|.+++|+|++ .+
T Consensus 160 ~s~d~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~ 198 (340)
T 1got_B 160 SSGDTTCALWDIETGQ----------------------------------------QTTTFTGHTGDVMSLSLAPDT-RL 198 (340)
T ss_dssp EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SE
T ss_pred EECCCcEEEEECCCCc----------------------------------------EEEEEcCCCCceEEEEECCCC-CE
Confidence 9999999999997542 336677899999999999998 88
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--c
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H 262 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~ 262 (387)
+++|+.|+.|++||++++. ....+.+|...|++++|+| ++++|++|+.||.|++||++. .+.+..+.. +
T Consensus 199 l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~ 269 (340)
T 1got_B 199 FVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNI 269 (340)
T ss_dssp EEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTC
T ss_pred EEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCCc
Confidence 9999999999999999887 6777889999999999999 999999999999999999998 666666642 3
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...|.+++|+|++++ +++|+.|+.|++||+... .....+.+|...|.+++|+|++.+++
T Consensus 270 ~~~v~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~dg~~l~----- 328 (340)
T 1got_B 270 ICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMAVA----- 328 (340)
T ss_dssp CSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTSSCEE-----
T ss_pred ccceEEEEECCCCCE-EEEECCCCeEEEEEcccC---------------cEeeEeecCCCcEEEEEEcCCCCEEE-----
Confidence 357999999999995 679999999999999874 34566789999999999999999887
Q ss_pred CCCCCCCCceEEEEe
Q 016547 343 DCDSTGGGGTLQIWR 357 (387)
Q Consensus 343 d~~tg~~dg~i~iw~ 357 (387)
||+.||+|+|||
T Consensus 329 ---s~s~D~~i~iWd 340 (340)
T 1got_B 329 ---TGSWDSFLKIWN 340 (340)
T ss_dssp ---EEETTSCEEEEC
T ss_pred ---EEcCCccEEecC
Confidence 777889999997
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-41 Score=309.48 Aligned_cols=262 Identities=25% Similarity=0.486 Sum_probs=231.2
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
...+|.+.|.+++|+| ++++|++++.||+|++||.... ....+.+|.. .|.+++|+|++++|+++
T Consensus 298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~-~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSS-SVWGVAFSPDGQTIASA 362 (577)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence 4557999999999999 8899999999999999997654 4566788887 68999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|+.|++||... +.+..+.+|...|.+++|+|++ .+|
T Consensus 363 ~~dg~v~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~dg-~~l 400 (577)
T 2ymu_A 363 SDDKTVKLWNRNG-----------------------------------------QLLQTLTGHSSSVRGVAFSPDG-QTI 400 (577)
T ss_dssp ETTSEEEEEETTC-----------------------------------------CEEEEEECCSSCEEEEEECTTS-SCE
T ss_pred eCCCEEEEEcCCC-----------------------------------------CEEEEecCCCCCeEEEEECCCC-CEE
Confidence 9999999999642 2335677899999999999999 889
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
++++.|+.|++||.. ++ ....+..|...|++++|+| ++++|++++.|+.|++||.. ++.+..+.+|...
T Consensus 401 ~~~~~d~~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 401 ASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSS 469 (577)
T ss_dssp EEEETTSEEEEECTT-CC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSC
T ss_pred EEEeCCCEEEEEeCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCC
Confidence 999999999999964 33 5677889999999999999 99999999999999999964 6788899999999
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~ 345 (387)
|.+++|+|++++ |++++.|+.|++||... .++..+.+|...|++++|+|++++|+
T Consensus 470 v~~~~~spd~~~-las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~-------- 524 (577)
T 2ymu_A 470 VRGVAFSPDGQT-IASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIA-------- 524 (577)
T ss_dssp EEEEEECTTSCE-EEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSSCEE--------
T ss_pred EEEEEEcCCCCE-EEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEE--------
Confidence 999999999995 67999999999999643 34667789999999999999999887
Q ss_pred CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++.||.|++||.. ++++.++.+|.+.|++++|+|
T Consensus 525 s~~~dg~v~lwd~~-------~~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 525 SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp EEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECT
T ss_pred EEECcCEEEEEeCC-------CCEEEEEcCCCCCEEEEEEcC
Confidence 66777999999965 678889999999999999997
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=288.30 Aligned_cols=263 Identities=19% Similarity=0.301 Sum_probs=198.8
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
|.+.|++++|+| ++++||+|+.|++|+|||++...... ........+.+|.. .|.+++|+|++++|++|+.|+
T Consensus 57 h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 57 HKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp CCSCEEEEEECT-TSSEEEEEETTSCEEEEEC------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS
T ss_pred ccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCC
Confidence 999999999999 88999999999999999986531100 01245677889987 799999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+|++||+.... ...+.+..+.+|...|.+++|+|++ .+|++++
T Consensus 130 ~v~iwd~~~~~------------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s 172 (330)
T 2hes_X 130 SVWIWETDESG------------------------------------EEYECISVLQEHSQDVKHVIWHPSE-ALLASSS 172 (330)
T ss_dssp CEEEEECCTTC------------------------------------CCCEEEEEECCCSSCEEEEEECSSS-SEEEEEE
T ss_pred EEEEEeccCCC------------------------------------CCeEEEEEeccCCCceEEEEECCCC-CEEEEEc
Confidence 99999995321 1122346678899999999999998 8899999
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeCCCeEEEEEeccCCCCCC--CCceEEecc-ccc
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGV--GSPINKFEG-HSA 264 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~~-~~~ 264 (387)
.|+.|++||...+.......+.+|...|.+++|+| + +.+|++|+.|+.|++||++....... ..+...+.. |..
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 99999999998764335677889999999999999 6 67899999999999999986311000 033444544 889
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC-CeeEEEEcc--CCCeEEEEec
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNA--SDPWTVVSVS 341 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~s~s 341 (387)
.|.+++|++++ +|++++.||.|++||....... .......+|.. .|++++|+| ++.+|+
T Consensus 252 ~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~------------~~~~~~~~h~~~~v~~v~~~~~~~~~~la---- 313 (330)
T 2hes_X 252 QVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWK------------VFAKRALCHGVYEINVVKWLELNGKTILA---- 313 (330)
T ss_dssp CEEEEEECTTS--CEEEEETTSCEEEEEEETTEEE------------EEEEESCTTTTSCEEEEEEC-----CCEE----
T ss_pred ceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceE------------EEeccccccccceEEEEEEecCCCceEEE----
Confidence 99999999776 4679999999999998753111 11223357877 899999999 566555
Q ss_pred CCCCCCCCCceEEEEecC
Q 016547 342 DDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~ 359 (387)
||+.||+|++|++.
T Consensus 314 ----s~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 314 ----TGGDDGIVNFWSLE 327 (330)
T ss_dssp ----EEETTSEEEEEEC-
T ss_pred ----EecCCCcEEEEEec
Confidence 66667999999987
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.5e-42 Score=291.56 Aligned_cols=299 Identities=19% Similarity=0.287 Sum_probs=224.9
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.++.||.+.|++|+|+|+++++||||+.||+|+|||+.+.+... ..+...+.+|.. .|.+++|+|++++|++
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l~~h~~-~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRALRGHSH-FVSDVVISSDGQFALS 103 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEEeCCCC-CEEEEEECCCCCEEEE
Confidence 45678999999999999668999999999999999998764221 135667899987 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCceeccCCCCCCCCCCCCCCCCCC-CceeecCCCCCeEEEEEcc
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 179 (387)
++.|+.|++|+................ ........+ .....++.+.+|+..... ......+|...+..++|++
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI--VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE--EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccc--eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 999999999999876433222111100 001111111 111234455556554433 2344568899999999998
Q ss_pred CCC-eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 180 SSA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 180 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
++. .++++++.|+.|++||+++.+ ....+.+|...|++++|+| ++++|++|+.||.|++||+++ .+++..
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~ 252 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYT 252 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------Cceeee
Confidence 753 467889999999999999877 6777889999999999999 999999999999999999998 788888
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+.. ...|.+++|+|++. ++ +++.|+.|++||++.......... ........+|...|++++|+|++++|+
T Consensus 253 ~~~-~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~- 322 (340)
T 4aow_A 253 LDG-GDIINALCFSPNRY-WL-CAATGPSIKIWDLEGKIIVDELKQ------EVISTSSKAEPPQCTSLAWSADGQTLF- 322 (340)
T ss_dssp EEC-SSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEECC------C-------CCCCCEEEEEECTTSSEEE-
T ss_pred ecC-CceEEeeecCCCCc-ee-eccCCCEEEEEECCCCeEEEeccc------cceeeeccCCCCCEEEEEECCCCCEEE-
Confidence 874 46799999999886 44 666799999999987432211110 112233467899999999999999887
Q ss_pred EecCCCCCCCCCceEEEEecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~ 359 (387)
||+.||.|+|||+.
T Consensus 323 -------sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 323 -------AGYTDNLVRVWQVT 336 (340)
T ss_dssp -------EEETTSCEEEEEEE
T ss_pred -------EEeCCCEEEEEeCC
Confidence 77778999999998
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-41 Score=281.06 Aligned_cols=251 Identities=21% Similarity=0.339 Sum_probs=214.5
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.....|..+|.+++|+| ++++|++|+.|++|++||+.++ +.+..+.+|.+ .|.+++|+|++++|++
T Consensus 49 ~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s 114 (304)
T 2ynn_A 49 RSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLS 114 (304)
T ss_dssp EEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEE
T ss_pred EEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEeCCCC-cEEEEEEcCCCCEEEE
Confidence 44557999999999999 8899999999999999999988 67888999998 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.|++|++||++++. .....+.+|...|.+++|+|+++.+
T Consensus 115 gs~D~~v~lWd~~~~~---------------------------------------~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNW---------------------------------------ALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EETTSCEEEEEGGGTT---------------------------------------EEEEEECCCCSCEEEEEECTTCTTE
T ss_pred ECCCCeEEEEECCCCc---------------------------------------chhhhhcccCCcEEEEEECCCCCCE
Confidence 9999999999997531 1225678899999999999965588
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
|++|+.|+.|++||++.... .......|...+..++|+|. ++.+|++|+.|+.|++||+++ ++++..+.+|.
T Consensus 156 l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~ 228 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHM 228 (304)
T ss_dssp EEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCS
T ss_pred EEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCC
Confidence 99999999999999987663 23334466788999999862 567999999999999999998 88999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSD 342 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~ 342 (387)
..|.+++|+|+++. |++++.||.|++||+.+. ++...+..|...+.+++|+|++.. +++++++
T Consensus 229 ~~v~~~~~~p~~~~-l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 229 SNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp SCEEEEEECSSSSE-EEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred CCEEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 99999999999995 679999999999999875 346677888999999999998864 3554443
Q ss_pred CCCCCCCCceEEEEecC
Q 016547 343 DCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~ 359 (387)
+.+.+|++.
T Consensus 293 --------~g~~~~~~~ 301 (304)
T 2ynn_A 293 --------NGFTVLSLG 301 (304)
T ss_dssp --------TEEEEEECC
T ss_pred --------CceEEEEec
Confidence 468888887
No 28
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-42 Score=291.74 Aligned_cols=261 Identities=20% Similarity=0.303 Sum_probs=205.7
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~ 103 (387)
...+|.+.|++++|+| ++++||+|+.|++|+|||+.++. ...+..+.+|.+ .|.+++|++ ++++|+
T Consensus 8 ~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~----------~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGG----------QILIADLRGHEG-PVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEECCGGGSSCEE
T ss_pred ecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCC----------cEEEEEEcCCCc-cEEEEEeCCCCCCCEEE
Confidence 3458999999999999 89999999999999999998761 024567899998 799999986 489999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-C
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-A 182 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 182 (387)
+|+.|++|++||++++. ......+.+|...|.+++|+|++ +
T Consensus 76 s~s~D~~v~iWd~~~~~--------------------------------------~~~~~~~~~h~~~V~~v~~~p~~~g 117 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGT--------------------------------------WEKSHEHAGHDSSVNSVCWAPHDYG 117 (316)
T ss_dssp EEETTSCEEEECCSSSC--------------------------------------CCEEEEECCCSSCCCEEEECCTTTC
T ss_pred EEECCCEEEEEECCCCc--------------------------------------ceEEEEccCCCCceEEEEECCCCCC
Confidence 99999999999987532 11235567899999999999982 2
Q ss_pred eeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCC-----------------CCeEEEeeCCCeEEEEEe
Q 016547 183 QEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD-----------------DNLILTGSADNSVRMFDR 244 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-----------------~~~l~~~~~dg~i~~~d~ 244 (387)
.+|++++.|+.|++||++.... .....+..|...+.+++|+| + +.+|++|+.|+.|++||+
T Consensus 118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 7899999999999999987632 12345567889999999999 5 478999999999999999
Q ss_pred ccCCCCCCCCceEEeccccceEEEEEEcCCC---CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 321 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
+.... .+++..+.+|...|.+++|+|++ ..+|++++.|+.|++||++...... .....+..|.
T Consensus 197 ~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----------~~~~~~~~~~ 262 (316)
T 3bg1_A 197 EEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----------WSPKLLHKFN 262 (316)
T ss_dssp CTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----------CBCCEEEECS
T ss_pred CCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-----------hhhhhhhcCC
Confidence 75110 14667788999999999999986 2357899999999999997632110 0112235688
Q ss_pred CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..|.+++|+|++++|+ +|+.||+|++|+..
T Consensus 263 ~~v~~v~~sp~g~~la--------s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 263 DVVWHVSWSITANILA--------VSGGDNKVTLWKES 292 (316)
T ss_dssp SCEEEEEECTTTCCEE--------EEESSSCEEEEEEC
T ss_pred CcEEEEEEcCCCCEEE--------EEcCCCeEEEEEEC
Confidence 8999999999999877 66677999999986
No 29
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.1e-41 Score=282.72 Aligned_cols=254 Identities=15% Similarity=0.289 Sum_probs=211.2
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++ +....+.+|.. .|.+++|+|++++|+
T Consensus 58 ~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~ 123 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATG------------ETYQRFVGHKS-DVMSVDIDKKASMII 123 (319)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSCEEE
T ss_pred ceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------CeeEEEccCCC-cEEEEEEcCCCCEEE
Confidence 345668999999999999 8999999999999999999988 67788999998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC--
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-- 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 181 (387)
+|+.|++|++||++.. .+..+.+|...|.++.|.|..
T Consensus 124 s~s~D~~i~vwd~~~~-----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 124 SGSRDKTIKVWTIKGQ-----------------------------------------CLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEETTSCEEEEETTSC-----------------------------------------EEEEECCCSSCEEEEEECCC---
T ss_pred EEeCCCeEEEEECCCC-----------------------------------------eEEEEeccCCcEEEEEEccCCCC
Confidence 9999999999998632 235677899999999999853
Q ss_pred ---CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 182 ---AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 182 ---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
...+++++.|+.|++||+++.+ ....+.+|...|.+++|+| ++++|++|+.||.|++||+++ .+.+..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~------~~~~~~ 233 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA------KKAMYT 233 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEE
T ss_pred CCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------CcEEEE
Confidence 2479999999999999998876 5667789999999999999 999999999999999999998 788888
Q ss_pred eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
+.. ...|.+++|+|++.. +++++ ++.+++|++........... ........|...+.+++|+|+|++|+
T Consensus 234 ~~~-~~~v~~~~~sp~~~~-la~~~-~~~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~spdg~~l~- 302 (319)
T 3frx_A 234 LSA-QDEVFSLAFSPNRYW-LAAAT-ATGIKVFSLDPQYLVDDLRP-------EFAGYSKAAEPHAVSLAWSADGQTLF- 302 (319)
T ss_dssp EEC-CSCEEEEEECSSSSE-EEEEE-TTEEEEEEETTEEEEEEECC-------CCTTCCGGGCCCEEEEEECTTSSEEE-
T ss_pred ecC-CCcEEEEEEcCCCCE-EEEEc-CCCcEEEEeCcCeeeeccCc-------cccccccCcCcceeEEEECCCCCEEE-
Confidence 875 467999999999985 55665 55699999986422111000 00011234667899999999999888
Q ss_pred EecCCCCCCCCCceEEEEecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+|+.||.|+|||+.
T Consensus 303 -------sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 303 -------AGYTDNVIRVWQVM 316 (319)
T ss_dssp -------EEETTSCEEEEEEE
T ss_pred -------EeecCceEEEEEEe
Confidence 77778999999987
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.2e-41 Score=306.23 Aligned_cols=268 Identities=24% Similarity=0.461 Sum_probs=228.7
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
+..++.+|.+.|++++|+| ++++||+|+.|++|+|||. ++ +.+..+.+|.. .|++++|+|++++|
T Consensus 8 e~~~L~GH~~~V~~~a~sp-dg~~las~~~d~~v~iWd~-~~------------~~~~~l~gh~~-~V~~l~fspdg~~l 72 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NG------------QLLQTLTGHSS-SVWGVAFSPDGQTI 72 (577)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TS------------CEEEEEECCSS-CEEEEEECTTSSEE
T ss_pred EeeEECCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEC-CC------------CEEEEEeCCCC-CEEEEEECCCCCEE
Confidence 3456779999999999999 9999999999999999995 44 56788999998 79999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|++|++||... +.+..+.+|...|.+++|+|++
T Consensus 73 as~~~d~~i~vWd~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~d~- 110 (577)
T 2ymu_A 73 ASASDDKTVKLWNRNG-----------------------------------------QLLQTLTGHSSSVRGVAFSPDG- 110 (577)
T ss_dssp EEEETTSCEEEEETTS-----------------------------------------CEEEEECCCSSCEEEEEECTTS-
T ss_pred EEEeCCCEEEEEECCC-----------------------------------------CEEEEEECCCCCEEEEEECCCC-
Confidence 9999999999999642 2336677889999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCC--------------------------------------ceeEEeeccCCCeeEEEecC
Q 016547 183 QEFCSVGDDSCLILWDARVGTS--------------------------------------PVIKVEKAHDADLHCVDWNP 224 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~ 224 (387)
.++++++.|+.+++|+...... ........|...|.++.++|
T Consensus 111 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (577)
T 2ymu_A 111 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 190 (577)
T ss_dssp SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC
Confidence 7899999999999998653210 11223345777889999999
Q ss_pred CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547 225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 225 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 304 (387)
++.+|++++.||.|++||.. ++.+..+.+|...|.+++|+|+++. +++++.|+.|++||...
T Consensus 191 -~~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~i~~w~~~~--------- 252 (577)
T 2ymu_A 191 -DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG--------- 252 (577)
T ss_dssp -TSSCEEEEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTS---------
T ss_pred -CCCEEEEEcCCCEEEEEeCC-------CcEEEEEecCCCCEEEEEECCCCCE-EEEEeCCCEEEEEeCCC---------
Confidence 99999999999999999964 6788899999999999999999996 57999999999999654
Q ss_pred CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEee
Q 016547 305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT 384 (387)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 384 (387)
+.+..+.+|...|++++|+|+++.++ +++.|+.|++|+.. ++.+..+.+|...|++++
T Consensus 253 -------~~~~~~~~~~~~v~~v~~~~d~~~l~--------~~~~d~~i~~w~~~-------~~~~~~~~~h~~~v~~~~ 310 (577)
T 2ymu_A 253 -------QLLQTLTGHSSSVNGVAFRPDGQTIA--------SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVA 310 (577)
T ss_dssp -------CEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETT-------SCEEEEECCCSSCEEEEE
T ss_pred -------CEEEEEecCCCCEEEEEEcCCCCEEE--------EEeCCCEEEEEeCC-------CcEEEEEecCCCCeEEEE
Confidence 34666788999999999999999877 66677999999976 667788899999999999
Q ss_pred ecC
Q 016547 385 SKP 387 (387)
Q Consensus 385 f~P 387 (387)
|+|
T Consensus 311 ~~~ 313 (577)
T 2ymu_A 311 FSP 313 (577)
T ss_dssp ECT
T ss_pred ECC
Confidence 987
No 31
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-40 Score=283.48 Aligned_cols=252 Identities=19% Similarity=0.298 Sum_probs=214.0
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.....|...|.+++|+| ++.+|++|+.|+.+++|++....... .......+.+|.. .|.++.|+|++..|++
T Consensus 100 ~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t 171 (354)
T 2pbi_B 100 HAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNEN------MAAKKKSVAMHTN-YLSACSFTNSDMQILT 171 (354)
T ss_dssp EEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCC------SGGGCEEEEECSS-CEEEEEECSSSSEEEE
T ss_pred eEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEecccccc------ccccceeeeccCC-cEEEEEEeCCCCEEEE
Confidence 34456889999999999 89999999999999999987653211 1134567788987 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Ce
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQ 183 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 183 (387)
++.|++|++||++++ +.+..+.+|...|.+++|+|+. +.
T Consensus 172 ~s~D~~v~lwd~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 172 ASGDGTCALWDVESG----------------------------------------QLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EETTSEEEEEETTTC----------------------------------------CEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EeCCCcEEEEeCCCC----------------------------------------eEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 999999999999754 2346778899999999998852 27
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH- 262 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~- 262 (387)
+|++|+.||.|++||+++++ ....+..|...|++++|+| ++.+|++|+.|+.|++||++. ...+..+..+
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~------~~~~~~~~~~~ 282 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA------DREVAIYSKES 282 (354)
T ss_dssp EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTT
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCC
Confidence 89999999999999999887 6777889999999999999 999999999999999999997 6666555433
Q ss_pred -cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 263 -SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 263 -~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
...+.+++|+|++++ +++++.|+.|++||+.+. ..+..+.+|...|++++|+|++.+|+
T Consensus 283 ~~~~~~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~---------------~~~~~l~~h~~~v~~l~~spdg~~l~---- 342 (354)
T 2pbi_B 283 IIFGASSVDFSLSGRL-LFAGYNDYTINVWDVLKG---------------SRVSILFGHENRVSTLRVSPDGTAFC---- 342 (354)
T ss_dssp CCSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC---------------SEEEEECCCSSCEEEEEECTTSSCEE----
T ss_pred cccceeEEEEeCCCCE-EEEEECCCcEEEEECCCC---------------ceEEEEECCCCcEEEEEECCCCCEEE----
Confidence 357899999999995 679999999999999875 23566789999999999999999887
Q ss_pred CCCCCCCCCceEEEEe
Q 016547 342 DDCDSTGGGGTLQIWR 357 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~ 357 (387)
+|+.||+|++|+
T Consensus 343 ----sgs~D~~v~vW~ 354 (354)
T 2pbi_B 343 ----SGSWDHTLRVWA 354 (354)
T ss_dssp ----EEETTSEEEEEC
T ss_pred ----EEcCCCCEEecC
Confidence 777889999996
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=280.95 Aligned_cols=284 Identities=14% Similarity=0.242 Sum_probs=234.2
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 98 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~ 98 (387)
....+...+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +....+.+|.. .|.+++|+|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~ 85 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTG-TIWSIDVDCF 85 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTT
T ss_pred ccccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCC-cEEEEEEcCC
Confidence 33567778889999999999999 8899999999999999999988 77888999987 7999999999
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
+++|++++.||.|++||+.++.. +..+. +...|.+++|+
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~----------------------------------------~~~~~-~~~~v~~~~~~ 124 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQC----------------------------------------VATWK-SPVPVKRVEFS 124 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE----------------------------------------EEEEE-CSSCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCcE----------------------------------------EEEee-cCCCeEEEEEc
Confidence 99999999999999999975432 23333 77889999999
Q ss_pred cCCCeeEEEecCC-----CeEEEEEccCCCCc---------eeEEeeccCC--CeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 179 PSSAQEFCSVGDD-----SCLILWDARVGTSP---------VIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 179 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
|++ .++++++.+ +.|++||++..... .......|.. .+.+++|+| ++++|++++.||.|++|
T Consensus 125 ~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 125 PCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKY 202 (369)
T ss_dssp TTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEE
T ss_pred cCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEE
Confidence 998 788888888 99999999876421 2233445555 899999999 99999999999999999
Q ss_pred EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547 243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 322 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
|+++. ...+..+..|...|.+++|+|++++ |++++.|+.|++||++... ....+. +..
T Consensus 203 d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~---------------~~~~~~-~~~ 260 (369)
T 3zwl_B 203 DVSNN-----YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVSTLQ---------------VLKKYE-TDC 260 (369)
T ss_dssp ETTTT-----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCC---------------EEEEEE-CSS
T ss_pred ECCCC-----cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCCCc---------------eeeeec-CCC
Confidence 99863 4677888889999999999999996 5689999999999998752 233333 778
Q ss_pred CeeEEEEccCCCeEEEEecCCCC------CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCD------STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~------tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+..++|+|+++++++++.++.. .......+++||+. .++++..+.+|...|.+++|+|
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI------FEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC------CCcchhheecccCcEEEEEECC
Confidence 99999999999988854432200 00011189999999 7888999999999999999987
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-40 Score=290.18 Aligned_cols=279 Identities=13% Similarity=0.168 Sum_probs=228.2
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC----C-
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT----E- 99 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~----~- 99 (387)
..+.+|.+.|++++|+| ++|++|+.||.|++||+.+.+.... ......+.+|.. .|.+++|+|+ +
T Consensus 10 ~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~-~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKS-GLHHVDVLQAIERDAF 79 (397)
T ss_dssp EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTT-CEEEEEEEEEEETTTE
T ss_pred hhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCC-cEEEEEEecccccCCc
Confidence 34457999999999987 6999999999999999998732111 136778889987 6999999999 9
Q ss_pred --CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-----CCCe
Q 016547 100 --PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----EDTV 172 (387)
Q Consensus 100 --~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v 172 (387)
++|++++.||.|++||+.++... .......+..| ...|
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~v 124 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDET-----------------------------------KKVIFEKLDLLDSDMKKHSF 124 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTT-----------------------------------CCEEEEEECCSCTTGGGSCE
T ss_pred cccEEEEEcCCCCEEEEEccCCccc-----------------------------------ccccceeecccccccCCCcE
Confidence 99999999999999999864320 00013556667 5899
Q ss_pred EEEEEc----cCCCee-EEEecCCCeEEEEEccC------CCCce---eEEe-------eccCCCeeEEEecCCCCCeEE
Q 016547 173 EDVTFC----PSSAQE-FCSVGDDSCLILWDARV------GTSPV---IKVE-------KAHDADLHCVDWNPLDDNLIL 231 (387)
Q Consensus 173 ~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~------~~~~~---~~~~-------~~~~~~i~~~~~~~~~~~~l~ 231 (387)
.+++|+ |++ .. |++++.||.|++||++. .+... ...+ ..|...|.+++|+| ++ +|+
T Consensus 125 ~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~ 201 (397)
T 1sq9_A 125 WALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIA 201 (397)
T ss_dssp EEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEE
T ss_pred EEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEE
Confidence 999999 998 67 99999999999999998 54221 0033 45889999999999 88 999
Q ss_pred EeeCCCeEEEEEeccCCCCCCCCceEEecc---c---cceEEEEEEcCCCCeeEEEecCC---CeEEEEeCCCCCceecc
Q 016547 232 TGSADNSVRMFDRRNLTSNGVGSPINKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQ 302 (387)
Q Consensus 232 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~~~~~ 302 (387)
+++.||.|++||+++ .+++..+.. | ...|.+++|+|++++ |++++.| +.|++||++...
T Consensus 202 ~~~~dg~i~i~d~~~------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~----- 269 (397)
T 1sq9_A 202 TGFNNGTVQISELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGE----- 269 (397)
T ss_dssp EECTTSEEEEEETTT------TEEEEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCC-----
T ss_pred EEeCCCcEEEEECCC------CceeEEEeccccccccCCccceEEECCCCCE-EEEEecCCCCceEEEEECCCCc-----
Confidence 999999999999998 888899988 8 999999999999995 5688889 999999998752
Q ss_pred CCCCCCCCceeeeeecc-------------CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchh
Q 016547 303 GPRTTNYPAGLFFQHAG-------------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 369 (387)
Q Consensus 303 ~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~ 369 (387)
.+..+.+ |...|.+++|+|++++++ +|+.||.|++||+. ++++
T Consensus 270 ----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~iwd~~------~~~~ 325 (397)
T 1sq9_A 270 ----------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--------SAGWDGKLRFWDVK------TKER 325 (397)
T ss_dssp ----------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEE--------EEETTSEEEEEETT------TTEE
T ss_pred ----------ccceeccCcccccccccccccCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEcC------CCce
Confidence 3445555 899999999999999877 66677999999999 6788
Q ss_pred hhhhh------cc---------------CceEEEeeecC
Q 016547 370 LAELE------KF---------------KAHVISCTSKP 387 (387)
Q Consensus 370 ~~~~~------~~---------------~~~v~~~~f~P 387 (387)
+..+. +| ...|++++|+|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 326 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred eEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence 88888 77 99999999987
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-39 Score=276.82 Aligned_cols=273 Identities=20% Similarity=0.350 Sum_probs=228.9
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTE 99 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~ 99 (387)
.+.....+|.+.|++++|+| ++++|++++ ||.|++||+.+.... .....+. +|.. .|.+++|+|++
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~ 109 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNK---------SPVSQLDCLNRDN-YIRSCKLLPDG 109 (337)
T ss_dssp EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCC---------SCSEEEECSCTTS-BEEEEEECTTS
T ss_pred cccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCce---------eeeecccccCCCC-cEEEEEEcCCC
Confidence 34556678999999999999 889999998 999999999876322 2333343 6666 79999999999
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
++|++++.|+.|++||+.++.. .....+..|...|.+++|+|
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTP--------------------------------------RIKAELTSSAPACYALAISP 151 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC----------------------------------------EEEEEEECSSSCEEEEEECT
T ss_pred CEEEEEcCCCcEEEEECCCCCc--------------------------------------ceeeecccCCCceEEEEECC
Confidence 9999999999999999975421 12355678889999999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
++ .++++++.||.|++||+++++ ....+..|...+.+++|+| ++++|++++.||.|++||+++ ++.+..+
T Consensus 152 ~~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------~~~~~~~ 221 (337)
T 1gxr_A 152 DS-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQH 221 (337)
T ss_dssp TS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEE
T ss_pred CC-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCC------CceEeee
Confidence 98 789999999999999999876 5677778999999999999 999999999999999999998 7777766
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
. +...+.+++|+|+++. +++++.|+.|++||++... ...+..|...|.+++|+|++++++
T Consensus 222 ~-~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~-- 281 (337)
T 1gxr_A 222 D-FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD----------------KYQLHLHESCVLSLKFAYCGKWFV-- 281 (337)
T ss_dssp E-CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC----------------EEEECCCSSCEEEEEECTTSSEEE--
T ss_pred c-CCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCC----------------eEEEcCCccceeEEEECCCCCEEE--
Confidence 5 7788999999999996 5688899999999998742 334578999999999999999877
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++.||.|++|++. +++.+. ...|...|.+++|+|
T Consensus 282 ------~~~~dg~i~~~~~~------~~~~~~-~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 282 ------STGKDNLLNAWRTP------YGASIF-QSKESSSVLSCDISV 316 (337)
T ss_dssp ------EEETTSEEEEEETT------TCCEEE-EEECSSCEEEEEECT
T ss_pred ------EecCCCcEEEEECC------CCeEEE-EecCCCcEEEEEECC
Confidence 66667999999999 555553 345889999999987
No 35
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-41 Score=296.41 Aligned_cols=290 Identities=14% Similarity=0.147 Sum_probs=217.3
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS 104 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s 104 (387)
...+|...|+||+|+|.++++||+|+.||+|+|||+.+.+. .....+.+|.+ .|++|+|+| ++++|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~----------~~~~~~~gH~~-~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK----------PTFIKGIGAGG-SITGLKFNPLNTNQFYA 182 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC----------CEEECCCSSSC-CCCEEEECSSCTTEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc----------eeEEEccCCCC-CEEEEEEeCCCCCEEEE
Confidence 34579999999999997888999999999999999987721 23344568887 799999998 6889999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.||+|++||+++..... ......+...+.+++|+|++ .+
T Consensus 183 ~s~D~~v~iwd~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-~~ 223 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRV--------------------------------------FASSDTINIWFCSLDVSASS-RM 223 (435)
T ss_dssp ECSSSCEEEEETTSCEEEE--------------------------------------EECCSSCSCCCCCEEEETTT-TE
T ss_pred EeCCCEEEEeeccCCceeE--------------------------------------EeccCCCCccEEEEEECCCC-CE
Confidence 9999999999997532110 01112334567899999998 89
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
|++|+.||.|++||++... +..+..|...|++++|+|....+|++|+.|+.|++||+++... ...+....+|..
T Consensus 224 l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~ 297 (435)
T 4e54_B 224 VVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRH 297 (435)
T ss_dssp EEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSS
T ss_pred EEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccc
Confidence 9999999999999997543 5567789999999999994445888999999999999987321 122334467999
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
.|++++|+|++.+ |++++.||.|+|||+...........+.. .......+....|+|++..++++.+.|.
T Consensus 298 ~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 298 PVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLIPHPH---------RHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CEEECCBCTTSSE-EEEEESSSCEEEEESSSSSSEEEECCCCC---------CCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred cccceeECCCCCe-eEEEcCCCEEEEEECCCCccceEEecccc---------cccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 9999999999996 57999999999999998644322111100 0001112345567777776666555442
Q ss_pred ----CCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEe-eecC
Q 016547 345 ----DSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISC-TSKP 387 (387)
Q Consensus 345 ----~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~-~f~P 387 (387)
+++..++.|++||.. +++++..+. +|...|.++ +|+|
T Consensus 368 ~~~~~~~~~~~~i~iwd~~------~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGN------SGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp TSCCSSTTCCCCEEEECSS------SCCEEEEECCSSCCCCCCEEEECT
T ss_pred CeEEEEecCCCEEEEEECC------CCcEEEEEeCCCCCcEEEEEEECC
Confidence 145566899999999 788777764 678888887 6887
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-40 Score=275.58 Aligned_cols=266 Identities=20% Similarity=0.251 Sum_probs=227.8
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
....+.+|.+.|++++| | ++++|++|+.||.|++||+.+. .....+..|.. .|.+++|+|++++|
T Consensus 10 ~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l 74 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQG-FLNSVCYDSEKELL 74 (313)
T ss_dssp EEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSS-CEEEEEEETTTTEE
T ss_pred HHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCc-cEEEEEECCCCCEE
Confidence 34556789999999999 7 7889999999999999999887 66777888876 79999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.||.|++|++.... ..+....+..|...|.++.| ++
T Consensus 75 ~~~~~dg~i~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~i~~~~~--~~- 114 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATS-------------------------------------GEDPLYTLIGHQGNVCSLSF--QD- 114 (313)
T ss_dssp EEEETTSCEEEEETTCCT-------------------------------------TSCC-CEECCCSSCEEEEEE--ET-
T ss_pred EEecCCCeEEEEEeeecC-------------------------------------CCCcccchhhcccCEEEEEe--cC-
Confidence 999999999999997531 22344667889999999999 34
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG- 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~- 261 (387)
.++++++.||.|++|| ..+ ....+..|...+.++++.|.+++++++++.||.|++||. .+....+..
T Consensus 115 ~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--------~~~~~~~~~~ 182 (313)
T 3odt_A 115 GVVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--------DKVIKTFSGI 182 (313)
T ss_dssp TEEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--------TEEEEEECSS
T ss_pred CEEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--------CceEEEEecc
Confidence 6899999999999999 333 566777899999999998878899999999999999993 556777776
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
|...+.+++|+|++. +++++.||.|++||++.. ..+..+.+|...|++++|+|++ .++
T Consensus 183 ~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~~-~l~---- 240 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG---------------DVLRTYEGHESFVYCIKLLPNG-DIV---- 240 (313)
T ss_dssp CSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTS-CEE----
T ss_pred CcccEEEEEEcCCCe--EEEccCCCeEEEEECCch---------------hhhhhhhcCCceEEEEEEecCC-CEE----
Confidence 899999999999997 568999999999999875 3466678899999999999998 455
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++.||.|++||+. +++++..+..|...|.+++|+|
T Consensus 241 ----~~~~dg~v~iwd~~------~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 241 ----SCGEDRTVRIWSKE------NGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp ----EEETTSEEEEECTT------TCCEEEEEECSSSCEEEEEECT
T ss_pred ----EEecCCEEEEEECC------CCceeEEEeccCceEEEEEEcc
Confidence 55666999999999 7888899999999999999987
No 37
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.8e-40 Score=278.68 Aligned_cols=260 Identities=20% Similarity=0.310 Sum_probs=204.2
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+.++ +....+.+|.. .|.+++|+|++++|++
T Consensus 70 ~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~------------~~~~~~~~h~~-~v~~v~~sp~~~~l~s 135 (343)
T 2xzm_R 70 KALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG------------TTYKRFVGHQS-EVYSVAFSPDNRQILS 135 (343)
T ss_dssp EEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS------------CEEEEEECCCS-CEEEEEECSSTTEEEE
T ss_pred chhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------cEEEEEcCCCC-cEEEEEECCCCCEEEE
Confidence 44568999999999999 8899999999999999999988 67788999998 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC--
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-- 182 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 182 (387)
++.|++|++||+....... ......|...|.+++|+|++.
T Consensus 136 ~~~d~~i~~wd~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 136 AGAEREIKLWNILGECKFS--------------------------------------SAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EETTSCEEEEESSSCEEEE--------------------------------------CCTTTSCSSCEEEEEECCCCCSC
T ss_pred EcCCCEEEEEeccCCceee--------------------------------------eecccCCCceeeeeeeccccccc
Confidence 9999999999986321100 011236888999999999862
Q ss_pred -------eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 183 -------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 183 -------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
.++++++.|+.|++||.. .+ ....+..|...|.+++|+| ++++|++|+.||.|++||++.. ..+
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~-----~~~ 248 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNL-----TYP 248 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCC-----SSC
T ss_pred cccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCC-----ccc
Confidence 579999999999999943 22 4567788999999999999 9999999999999999999542 334
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec-cCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE-QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
...+. +...|.+++|+|+++. ++++ .|+.|++||+........ .... .+........+|...|++++|+|+++
T Consensus 249 ~~~~~-~~~~v~~v~~sp~~~~-la~~-~d~~v~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 249 QREFD-AGSTINQIAFNPKLQW-VAVG-TDQGVKIFNLMTQSKAPVCTIEA---EPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SEEEE-CSSCEEEEEECSSSCE-EEEE-ESSCEEEEESSSCCSCSEEECCC---CSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred ceeec-CCCcEEEEEECCCCCE-EEEE-CCCCEEEEEeCCCCCCceEEeec---CcchhhhhhcCCCCceEEEEECCCCC
Confidence 44443 4567999999999984 5444 588899999986432210 0000 00000111247888999999999999
Q ss_pred eEEEEecCCCCCCCCCceEEEEecC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+|+ +|+.||+|++|++.
T Consensus 323 ~l~--------sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 323 KLF--------AGFTDGVIRTFSFE 339 (343)
T ss_dssp CEE--------EEETTSEEEEEEEE
T ss_pred eEE--------EecCCceEEEEEEE
Confidence 887 77778999999987
No 38
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5e-40 Score=288.77 Aligned_cols=293 Identities=35% Similarity=0.684 Sum_probs=230.1
Q ss_pred CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 98 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~ 98 (387)
.+.++....++|.+.|++++|+|.++.+||+|+.||.|++||+........ ......+...+.+|.. .|.+++|+|+
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~-~v~~l~~~~~ 192 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQK-EGYGLSWNPN 192 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSS-CCCCEEECTT
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCC-CeEEEEeCCC
Confidence 345666778899999999999995588999999999999999987322111 0112367788899988 6899999999
Q ss_pred CC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 99 EP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 99 ~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
+. +|++|+.||.|++|++........ .......+..|...|.+++|
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~v~~ 239 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHR---------------------------------VIDAKNIFTGHTAVVEDVAW 239 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGG---------------------------------EEECSEEECCCSSCEEEEEE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCc---------------------------------eeccceeecCCCCCEeeeEE
Confidence 88 999999999999999986321100 00123556789999999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+|+++.+|++++.||.|++||+++.. ......+..|...|++++|+| ++. +|++|+.||.|++||++.. ..+
T Consensus 240 ~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~-----~~~ 313 (430)
T 2xyi_A 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNL-----KLK 313 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCT-----TSC
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCC-----CCC
Confidence 99665899999999999999999763 124556678999999999999 665 7999999999999999973 467
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
+..+..|...|.+++|+|+++++|++++.|+.|+|||+.......... .....+..++..+.+|...|++++|+|++++
T Consensus 314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 392 (430)
T 2xyi_A 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH-HHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc-ccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence 888999999999999999998788999999999999998743221100 0001123567788899999999999999997
Q ss_pred EEEEecCCCCCCCCCceEEEEecCCC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
++++++ .||.|+||++...
T Consensus 393 ~l~s~s-------~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 393 IICSVS-------EDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEEE-------TTSEEEEEEECHH
T ss_pred EEEEEE-------CCCCEEEeEcccc
Confidence 777555 4599999999843
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-41 Score=299.43 Aligned_cols=262 Identities=11% Similarity=0.064 Sum_probs=199.6
Q ss_pred eeecCCCcEEEEEecCCC-C-------cEEEE-------------------ecCCCcEEEEeccCCCCcccccCCCCCCC
Q 016547 26 KTIIHPGEVNRIRELPQN-T-------KIVAT-------------------HTDSPDVLIWDVEAQPNRHAVLGATNSRP 78 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~-~-------~~l~t-------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 78 (387)
..+.+.+.|.+|+|+|.. + ++||+ ++.|++|+|||+.+++... ..
T Consensus 128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~--------~~ 199 (524)
T 2j04_B 128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC--------VK 199 (524)
T ss_dssp EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE--------EE
T ss_pred EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc--------eE
Confidence 345578999999999942 1 56666 4578899999998763110 11
Q ss_pred eEEEeccCCCceEEEEECCC------CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCC
Q 016547 79 DLILTGHQDNAEFALAMCPT------EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK 152 (387)
Q Consensus 79 ~~~~~~h~~~~v~~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (387)
...+.+|.+ .|.+++|+|+ +.+|++++.||+|++||+.++.......
T Consensus 200 ~~~l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-------------------------- 252 (524)
T 2j04_B 200 VQTIVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-------------------------- 252 (524)
T ss_dssp EEEEEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------------------------
T ss_pred EEEEEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------------------------
Confidence 234566665 6999999996 5799999999999999997543210000
Q ss_pred CCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEE--EecCCCC-Ce
Q 016547 153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDD-NL 229 (387)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~~ 229 (387)
.....+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ....+..|...|+++ +|+| ++ .+
T Consensus 253 ---~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~~ 325 (524)
T 2j04_B 253 ---KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDTV 325 (524)
T ss_dssp ---ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred ---eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCeE
Confidence 00112335678899999999999864 799999999999999987653 344577899999999 5677 76 89
Q ss_pred EEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547 230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 307 (387)
Q Consensus 230 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 307 (387)
|++|+.|++|+|||+++ ++++..+.+|.. .|.+++|+|+++. +++++.|+.|++||++..
T Consensus 326 laS~S~D~tvklWD~~~------~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~----------- 387 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKD------IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAA----------- 387 (524)
T ss_dssp EEEEETTSEEEEECGGG------HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCT-----------
T ss_pred EEEeccCCeEEEEECCC------CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccc-----------
Confidence 99999999999999998 677777776653 4789999999985 678899999999999875
Q ss_pred CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+...+.+|.+.|++++|+|++++++ +|+.||+|++||+.
T Consensus 388 ----~~~~~l~gH~~~V~sva~Sp~g~~l~--------Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 388 ----FAVHPLVSRETTITAIGVSRLHPMVL--------AGSADGSLIITNAA 427 (524)
T ss_dssp ----TCCEEEEECSSCEEEEECCSSCCBCE--------EEETTTEEECCBSC
T ss_pred ----ccceeeecCCCceEEEEeCCCCCeEE--------EEECCCEEEEEech
Confidence 22445678999999999999999877 67777999999864
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-40 Score=283.59 Aligned_cols=247 Identities=22% Similarity=0.394 Sum_probs=203.1
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
...|++++|+| ++++|++|+.||+|++||++++ +....+.+|.. .|.+++|+|++++|++++.|++
T Consensus 123 ~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~ 188 (393)
T 1erj_A 123 DLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRT 188 (393)
T ss_dssp CCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCc
Confidence 34599999999 8999999999999999999988 67788999998 7999999999999999999999
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
|++||++++... ..+ .+...+.+++|+|.++.++++++.
T Consensus 189 v~iwd~~~~~~~----------------------------------------~~~-~~~~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 189 VRIWDLRTGQCS----------------------------------------LTL-SIEDGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp EEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECSTTCCEEEEEET
T ss_pred EEEEECCCCeeE----------------------------------------EEE-EcCCCcEEEEEECCCCCEEEEEcC
Confidence 999999864321 222 245679999999943389999999
Q ss_pred CCeEEEEEccCCCCceeEEe-------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------CCCCceE
Q 016547 191 DSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GVGSPIN 257 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~ 257 (387)
|+.|++||+++++ ....+ .+|...|.+++|+| ++++|++|+.||.|++||++..... ..+.+..
T Consensus 228 d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~ 304 (393)
T 1erj_A 228 DRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304 (393)
T ss_dssp TSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred CCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE
Confidence 9999999998876 33333 57889999999999 9999999999999999999863210 1134566
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc------
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA------ 331 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------ 331 (387)
.+.+|...|.+++|+|++++ |++++.|+.|++||+... ..+..+.+|...|.+++|++
T Consensus 305 ~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~---------------~~~~~l~~h~~~v~~v~~~~~~~~~p 368 (393)
T 1erj_A 305 TYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPLLMLQGHRNSVISVAVANGSSLGP 368 (393)
T ss_dssp EEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred EEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC---------------eEEEEECCCCCCEEEEEecCCcCcCC
Confidence 78889999999999999996 579999999999999875 34567789999999999987
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++++++ ||+.||+|+||++.
T Consensus 369 ~~~~l~--------sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 369 EYNVFA--------TGSGDCKARIWKYK 388 (393)
T ss_dssp TCEEEE--------EEETTSEEEEEEEE
T ss_pred CCCEEE--------EECCCCcEEECccc
Confidence 455554 66667999999987
No 41
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-40 Score=288.26 Aligned_cols=266 Identities=23% Similarity=0.345 Sum_probs=212.7
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYV 102 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l 102 (387)
.....+|...|.+++|+| ++++|++|+.|+.|++||+.+..... ........+.+|.+ .|.++.|+|+ +..|
T Consensus 101 ~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 101 THAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRD-----GNMPVSRVLTGHKG-YASSCQYVPDQETRL 173 (380)
T ss_dssp EEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCC-----CSSTTCCBCCCCSS-CCCCCBCCSSSSSCE
T ss_pred ceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCcccc-----CCccceeeccCCCc-ceEEEEEecCCCCEE
Confidence 345567999999999999 89999999999999999997653211 11234456788987 6889999997 4579
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.|++|++||+.++........ ....+|...|.++.|++.++
T Consensus 174 ~s~s~D~~i~~wd~~~~~~~~~~~~-----------------------------------~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQRISIFGS-----------------------------------EFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp EEECTTSCEEEECTTTCCEEEEECC-----------------------------------CSSSSCCSCEEEEEECSSSC
T ss_pred EEECCCCcEEEEEcCCCcEEEEeec-----------------------------------ccCCCCccCeEEEEeecCCC
Confidence 9999999999999987543221111 11257889999999988544
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.+|++|+.|+.|++||++.... ....+.+|...|++++|+| ++.+|++|+.||.|++||+++ +..+..+..+
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~~ 290 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNRE 290 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT------TEEEEEECCC
T ss_pred CEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC------CcEEEEeccc
Confidence 8999999999999999985432 4667788999999999999 999999999999999999998 7777776544
Q ss_pred c-------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 263 S-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 263 ~-------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
. ..|.+++|+|++++ +++|+.||.|++||+........ +.....+|.+.|++++|+|++.+
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~-----------~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCYVWDTLLAEMVLN-----------LGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEEEEETTTCCEEEE-----------ECCSCSSCCCCCCEEEECSSSSE
T ss_pred ccccccccCceEEEEECCCCCE-EEEEECCCCEEEEECCCCceEEE-----------EecccCCCCCceEEEEECCCCCE
Confidence 3 24889999999996 57999999999999987432110 11112679999999999999998
Q ss_pred EEEEecCCCCCCCCCceEEEEecC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
|+ ||+.||+|++|++.
T Consensus 359 l~--------sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 359 LC--------TGSWDKNLKIWAFS 374 (380)
T ss_dssp EE--------EECTTSCEEEEECC
T ss_pred EE--------EeeCCCCEEEEecC
Confidence 87 88888999999998
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-40 Score=290.84 Aligned_cols=265 Identities=17% Similarity=0.333 Sum_probs=214.7
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL 103 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~ 103 (387)
...+.|.+.|++++|+| ++++|++|+.||.|++||+..... .......+.+|.. .|.+++|+|+ +++|+
T Consensus 61 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~ 130 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANN--------AINSMARFSNHSS-SVKTVKFNAKQDNVLA 130 (416)
T ss_dssp SCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTS--------CCCEEEECCCSSS-CCCEEEECSSSTTBEE
T ss_pred EEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccc--------cccchhhccCCcc-ceEEEEEcCCCCCEEE
Confidence 34457999999999999 889999999999999999987311 1146677888987 7999999998 89999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|+.|++||+.+........ .......+..|...|.+++|+|+++.
T Consensus 131 s~~~dg~v~iwd~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~ 179 (416)
T 2pm9_A 131 SGGNNGEIFIWDMNKCTESPSNY-------------------------------TPLTPGQSMSSVDEVISLAWNQSLAH 179 (416)
T ss_dssp EECSSSCEEBCBTTTTSSCTTTC-------------------------------CCBCCCCSCCSSCCCCEEEECSSCTT
T ss_pred EEcCCCeEEEEECCCCccccccc-------------------------------cccccccccCCCCCeeEEEeCCCCCc
Confidence 99999999999998653110000 00011234578899999999999558
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeecc------CCCeeEEEecCCCC-CeEEEeeCCC---eEEEEEeccCCCCCCC
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHCVDWNPLDD-NLILTGSADN---SVRMFDRRNLTSNGVG 253 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~~~~~~~~ 253 (387)
++++++.||.|++||+++++ ....+..+ ...|.+++|+| ++ .++++++.|+ .|++||+++. .
T Consensus 180 ~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~~~~i~~~d~~~~-----~ 251 (416)
T 2pm9_A 180 VFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHP-KNSTRVATATGSDNDPSILIWDLRNA-----N 251 (416)
T ss_dssp EEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECS-SCTTEEEEEECCSSSCCCCEEETTST-----T
T ss_pred EEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECC-CCCCEEEEEECCCCCceEEEEeCCCC-----C
Confidence 99999999999999999876 45555554 78899999999 65 7999999999 9999999972 2
Q ss_pred CceEEec-cccceEEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 254 SPINKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 254 ~~~~~~~-~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
.++..+. +|...|.+++|+| +++ +|++++.|+.|++||++.. ..+..+.+|...|++++|+|
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~---------------~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESA---------------EQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSC---------------CEEEEEECSSSCCCCEEECT
T ss_pred CCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCC---------------ccceeecCCCCceEEEEECC
Confidence 5677777 8999999999999 777 5679999999999999875 34666788999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
+++.+++ +++.||.|++|++...
T Consensus 316 ~~~~~l~-------s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 316 EAPDLFA-------CASFDNKIEVQTLQNL 338 (416)
T ss_dssp TCTTEEE-------ECCSSSEEEEEESCCC
T ss_pred CCCCEEE-------EEecCCcEEEEEccCC
Confidence 9944444 6677799999999854
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-39 Score=303.80 Aligned_cols=254 Identities=20% Similarity=0.392 Sum_probs=208.9
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.+|.+.|++++|+|+++++|+||+.||+|++||+....... ......+.+|.. .|.+++|+|++++|+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSH-FVEDVVLSSDGQFAL 446 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSS-CEEEEEECTTSSEEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCC-cEEEEEECCCCCEEE
Confidence 345668999999999999778899999999999999998652111 134567889998 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.||+|++||+.++. ....+.+|...|.+++|+|++ .
T Consensus 447 sgs~Dg~v~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~s~~~-~ 485 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGV----------------------------------------STRRFVGHTKDVLSVAFSLDN-R 485 (694)
T ss_dssp EEETTSEEEEEETTTTE----------------------------------------EEEEEECCSSCEEEEEECTTS-S
T ss_pred EEeCCCcEEEEECCCCc----------------------------------------ceeEEeCCCCCEEEEEEeCCC-C
Confidence 99999999999997542 235678899999999999998 7
Q ss_pred eEEEecCCCeEEEEEccCCCCcee-EEeeccCCCeeEEEecCCCC--CeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
+|++++.|++|++||......... ....+|...|.+++|+| ++ ..+++++.|+.|++||+++ .+....+.
T Consensus 486 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~ 558 (694)
T 3dm0_A 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLA 558 (694)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEEC
T ss_pred EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEc
Confidence 899999999999999865431101 11246888999999999 65 5899999999999999998 88889999
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
+|...|++++|+|++++ |++++.||.|++||++... .+..+. +...|.+++|+|++.++++ +
T Consensus 559 ~h~~~v~~v~~spdg~~-l~sg~~Dg~i~iwd~~~~~---------------~~~~~~-~~~~v~~~~~sp~~~~l~~-~ 620 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSL-CASGGKDGVVLLWDLAEGK---------------KLYSLE-ANSVIHALCFSPNRYWLCA-A 620 (694)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSBCEEEETTTTE---------------EEECCB-CSSCEEEEEECSSSSEEEE-E
T ss_pred CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCc---------------eEEEec-CCCcEEEEEEcCCCcEEEE-E
Confidence 99999999999999995 6799999999999998752 233333 4568999999998875542 2
Q ss_pred cCCCCCCCCCceEEEEecC
Q 016547 341 SDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~ 359 (387)
.|+.|++||+.
T Consensus 621 --------~~~~i~iwd~~ 631 (694)
T 3dm0_A 621 --------TEHGIKIWDLE 631 (694)
T ss_dssp --------ETTEEEEEETT
T ss_pred --------cCCCEEEEECC
Confidence 23679999998
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7e-40 Score=282.90 Aligned_cols=255 Identities=13% Similarity=0.158 Sum_probs=212.2
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
.|.++|++++|+| ++++|++|+.||.|++||+.+.+ ......+.+|.. .|.+++|+|++++|++++.|
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecCCCC-cccEEEEeCCCCEEEEEcCC
Confidence 4999999999999 88999999999999999998871 016778889987 79999999999999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.|++||+.++... ....+..|...|.+++|+|++ .+++++
T Consensus 74 g~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 114 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK--------------------------------------PTLVILRINRAARCVRWAPNE-KKFAVG 114 (372)
T ss_dssp SCEEEEEEETTEEE--------------------------------------EEEECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred CeEEEEECCCCeee--------------------------------------eeEEeecCCCceeEEEECCCC-CEEEEE
Confidence 99999999754211 113345688899999999998 889999
Q ss_pred cCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC------------CCCCC
Q 016547 189 GDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS------------NGVGS 254 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------~~~~~ 254 (387)
+.|+.|++||++..... .......|...|.+++|+| ++++|++++.||.|++||++.... ...++
T Consensus 115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 99999999999987631 2233356889999999999 999999999999999999752110 01167
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
.+..+..|...|.+++|+|++++ |++++.|+.|++||++.. ..+..+..|...|.+++|+|++.
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~ 257 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESS 257 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTE
T ss_pred heEecCCCCCeEEEEEECCCCCE-EEEEeCCCEEEEEECCCC---------------ceeEEEccCCCCeEEEEEecCCC
Confidence 88888899999999999999985 679999999999999875 34566778999999999999987
Q ss_pred eEEEEecCCCCCCCCCceEEEEecCC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+++ +| .|+.|++|++..
T Consensus 258 ~l~--------~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 258 LVA--------AG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEE--------EE-TTSSCEEEEEET
T ss_pred EEE--------EE-eCCeEEEEEccC
Confidence 655 33 569999999985
No 45
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=281.45 Aligned_cols=262 Identities=19% Similarity=0.294 Sum_probs=216.4
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~ 103 (387)
.+.+|.+.|++++|+| ++++||+|+.||.|+|||+... ..+....+.+|.. .|++++|+++ +++|+
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 73 (379)
T ss_dssp CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCC-cEEEEEeCCCCCCCEEE
Confidence 4568999999999999 8899999999999999999843 1156677889987 7999999987 99999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 181 (387)
+++.||.|++||+.++.. .....+..|...|.+++|+|+ +
T Consensus 74 s~~~dg~v~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred EeccCCEEEEEEcCCCce--------------------------------------eEeeeecCCCcceEEEEeCCCCCC
Confidence 999999999999986421 123566778999999999999 6
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC------------CCCeEEEeeCCCeEEEEEeccCCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
.++++++.|+.|++||++.........+..|...|.+++|+|. ++.+|++++.||.|++||++....
T Consensus 116 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 116 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp -SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred -CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 7899999999999999998865456667789999999999994 489999999999999999987311
Q ss_pred CCCCCceEEeccccceEEEEEEcCC---CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
. ...+..+.+|...|.+++|+|+ +. +|++++.||.|++||++....... ........|...|++
T Consensus 195 ~--~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 195 T--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWR 261 (379)
T ss_dssp E--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEE
T ss_pred c--eeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccce----------eeeeccccCCCcEEE
Confidence 0 1345677889999999999999 66 578999999999999987532211 123333458889999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++|+|++++++ +++.||.|++|++.
T Consensus 262 ~~~s~~g~~l~--------~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 262 ASWSLSGNVLA--------LSGGDNKVTLWKEN 286 (379)
T ss_dssp EEECSSSCCEE--------EEESSSSEEEEEEE
T ss_pred EEEcCCCCEEE--------EecCCCcEEEEeCC
Confidence 99999999887 56667999999987
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=277.29 Aligned_cols=309 Identities=15% Similarity=0.222 Sum_probs=229.4
Q ss_pred cceeeeeeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEE
Q 016547 20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAM 95 (387)
Q Consensus 20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~ 95 (387)
|.+......+|.+.|++++|+|.+..++++|+. ||.|++||+.++ +.... ..+|.. .|.+++|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~------------~~~~~~~~~~~~-~v~~~~~ 73 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG------------DLKLLREIEKAK-PIKCGTF 73 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS------------SEEEEEEEEESS-CEEEEEC
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC------------cccceeeecccC-cEEEEEE
Confidence 334445556799999999999955567778876 999999999987 33333 336765 7999999
Q ss_pred CCC---CCEEEEecCCCeEEEEEcCCCc-CccccCCCcccC----------CCCCCceeccCCCCCCCCCCCCCCCCCC-
Q 016547 96 CPT---EPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKS----------AGSSGSIIKQSPKPGDGNDKAADGPSVG- 160 (387)
Q Consensus 96 ~~~---~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 160 (387)
+|+ +++|++++.||.|++||+.++. ............ ....... ......++.+.+|+.....
T Consensus 74 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~--l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE--IVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE--EEEEETTSCEEEECTTSCSS
T ss_pred cCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE--EEEEeCCCeEEEEeCCCCCC
Confidence 998 6999999999999999998765 322222111100 0111111 1122346678888887776
Q ss_pred CceeecCCCC----CeEEEE----EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeE
Q 016547 161 PRGIYNGHED----TVEDVT----FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLI 230 (387)
Q Consensus 161 ~~~~~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l 230 (387)
+...+..|.. .+.+++ |+|++ .++++++.||.|++||+++++ ......|...|.+++|+|. ++.+|
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA---LRWETNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE---EEEEEECSSCEEEEEESCSSSSCCEE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc---eeeecCCCCceEEEEcCCCCCCCCEE
Confidence 6677766554 899998 67888 889999999999999999877 3444678899999999985 57899
Q ss_pred EEeeCCCeEEEEEeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547 231 LTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 305 (387)
Q Consensus 231 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 305 (387)
++++.||.|++||+++ .+++..+. +|...|.+++|+|+++.+|++++.||.|++||++...........
T Consensus 228 ~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRT------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp EEEESTTEEEEEEEEE------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred EEECCCCeEEEEeCcC------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 9999999999999998 55544443 899999999999999866789999999999999875443221111
Q ss_pred CC----CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 306 TT----NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 306 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.. ......+..+.+|...|++++|+|++++++++++.| |.|++||+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d-------~~i~iw~~~~ 353 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD-------QTVRVLIVTK 353 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT-------SEEEEEEECC
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC-------CcEEEEECCC
Confidence 10 011246777889999999999999999988755544 9999999983
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.6e-40 Score=282.38 Aligned_cols=280 Identities=15% Similarity=0.232 Sum_probs=222.9
Q ss_pred ecCCCcEEEEEecCC---CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC----CCceEEEEECCC--
Q 016547 28 IIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPT-- 98 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~~~~-- 98 (387)
.+|.++|++++|+|. ....+++++.++.|++||+.++ ..+..+..|. ...|++++|+|+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------GEIRLLQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------GCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------cEEEeeeeccccCCCCcEEEEEeccCCC
Confidence 479999999999983 3445556666679999999977 4444454432 236999999998
Q ss_pred --CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 99 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 99 --~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
+++|++|+.||.|++||+.++ +.+..+.+|...|.+++
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~----------------------------------------~~~~~~~~~~~~i~~~~ 122 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITM----------------------------------------QCIKHYVGHGNAINELK 122 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTC----------------------------------------CEEEEEESCCSCEEEEE
T ss_pred CCCCEEEEecCCCEEEEEEchhc----------------------------------------eEeeeecCCCCcEEEEE
Confidence 679999999999999998753 23466778999999999
Q ss_pred Ecc-CCCeeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547 177 FCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252 (387)
Q Consensus 177 ~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 252 (387)
|+| ++ .+|++++.||.|++||+++++ ....+ ..|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 123 ~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------ 192 (366)
T 3k26_A 123 FHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------ 192 (366)
T ss_dssp ECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------
T ss_pred ECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------
Confidence 999 65 899999999999999999876 45555 57999999999999 999999999999999999987
Q ss_pred CCceE----------------------------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547 253 GSPIN----------------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 253 ~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 304 (387)
++.+. ....|...|.+++|+ +. ++++++.|+.|++||++..........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccc
Confidence 33332 233489999999998 45 567999999999999988644332221
Q ss_pred CCCCCCceeeeeeccCCCCeeEEEEccC--CCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhh----hhhcc--
Q 016547 305 RTTNYPAGLFFQHAGHRDKVVDFHWNAS--DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA----ELEKF-- 376 (387)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~-- 376 (387)
. .......+..+.+|...|++++|+|+ +.+++ +|+.||.|++||+. .++++. .+.+|
T Consensus 270 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~--------~~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~ 334 (366)
T 3k26_A 270 P-SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA--------LGNQVGKLYVWDLE------VEDPHKAKCTTLTHHKC 334 (366)
T ss_dssp T-TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE--------EECTTSCEEEEECC------SSSGGGCEEEEECCTTC
T ss_pred c-CCcchheeccccccCCcEEEEEEcCCCCCcEEE--------EEecCCcEEEEECC------CCCCccccceEEccccc
Confidence 1 11223457778889999999999999 88777 77778999999999 555444 67777
Q ss_pred CceEEEeeecC
Q 016547 377 KAHVISCTSKP 387 (387)
Q Consensus 377 ~~~v~~~~f~P 387 (387)
...|++++|+|
T Consensus 335 ~~~v~~~~~s~ 345 (366)
T 3k26_A 335 GAAIRQTSFSR 345 (366)
T ss_dssp CSCEEEEEECT
T ss_pred CCceEEEEeCC
Confidence 79999999997
No 48
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4e-39 Score=271.26 Aligned_cols=248 Identities=21% Similarity=0.402 Sum_probs=209.8
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
...+|...|.+++|+| ++++|++|+.||.|++||++++ +.+..+.+|.. .|.+++|+|++++|++|
T Consensus 60 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 60 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSN-YVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEE
T ss_pred hhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEcCCCC-CEEEEEEcCCCCEEEEE
Confidence 4557999999999999 8899999999999999999988 67788999987 79999999999999999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.|+.|++||++++. ....+..|...|.+++|+|++ .++
T Consensus 126 ~~d~~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l 164 (312)
T 4ery_A 126 SFDESVRIWDVKTGK----------------------------------------CLKTLPAHSDPVSAVHFNRDG-SLI 164 (312)
T ss_dssp ETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEECTTS-SEE
T ss_pred eCCCcEEEEECCCCE----------------------------------------EEEEecCCCCcEEEEEEcCCC-CEE
Confidence 999999999997532 235667889999999999998 789
Q ss_pred EEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
++++.||.|++||+++++ .... ...+...+..++|+| ++++|++++.||.|++||+++ ++.+..+.+|..
T Consensus 165 ~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~ 235 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKN 235 (312)
T ss_dssp EEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECSSCC
T ss_pred EEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEEecCC
Confidence 999999999999999877 3333 345667899999999 999999999999999999998 888888888765
Q ss_pred eEE--EEEEc-CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 265 AVL--CVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 265 ~i~--~~~~~-~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
.+. ...++ +++. ++++|+.||.|++||+... ..+..+.+|...|.+++|+|+++.++.+
T Consensus 236 ~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~-- 297 (312)
T 4ery_A 236 EKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIASA-- 297 (312)
T ss_dssp SSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEEEE--
T ss_pred ceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceEEE--
Confidence 432 23344 4565 5779999999999999875 3467788999999999999999877632
Q ss_pred CCCCCCCCCceEEEEecC
Q 016547 342 DDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~ 359 (387)
+.+.|++|++|+.+
T Consensus 298 ----~~~~d~~i~~W~~d 311 (312)
T 4ery_A 298 ----ALENDKTIKLWKSD 311 (312)
T ss_dssp ----ECTTTCCEEEEECC
T ss_pred ----EccCCccEEEecCC
Confidence 12357999999975
No 49
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.5e-39 Score=276.83 Aligned_cols=279 Identities=17% Similarity=0.297 Sum_probs=217.1
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~ 103 (387)
.+.+|.+.|++++|+| ++++||+|+.||.|++||+.+.... .+....+.+|.. .|.+++|+| ++++|+
T Consensus 6 ~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~-~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDS-SIVAIDWASPEYGRIIA 75 (351)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSS-CEEEEEECCGGGCSEEE
T ss_pred cCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCC-cEEEEEEcCCCCCCEEE
Confidence 3458999999999999 8899999999999999999876211 134566788887 799999999 699999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 181 (387)
+++.||.|++||++++..... ....+....+..|...|.+++|+|+ +
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 124 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECS-------------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG 124 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTS-------------------------------SCSEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred EEcCCCeEEEEecCCCccccc-------------------------------ccCcceeeeecccCCceeEEEEcCCCCC
Confidence 999999999999986532110 0112345667789999999999999 7
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEE-----------eeccCCCeeEEEecCCC---CCeEEEeeCCCeEEEEEeccC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKV-----------EKAHDADLHCVDWNPLD---DNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~ 247 (387)
.++++++.||.|++||+++.+...... ...|...+.+++|+| + +.++++++.|+.+.+|+....
T Consensus 125 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 125 -LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP-SRFSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp -SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC-CSSSCCEEEEEETTEEEEEEECTTS
T ss_pred -cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc-CCCCCcEEEEecCCCcEEEEccCCC
Confidence 789999999999999998876321111 125778899999999 6 899999999999988877762
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCC---eeEEEecCCCeEEEEeCCCCCceeccCCCC------------------
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT------------------ 306 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~------------------ 306 (387)
. ...+..+.+|...|.+++|+|++. .+|++++.||.|++||++............
T Consensus 203 ~----~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
T 3f3f_A 203 K----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG 278 (351)
T ss_dssp C----EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------
T ss_pred c----eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence 1 223777888999999999999982 367899999999999998743221110000
Q ss_pred -------------CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 307 -------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 307 -------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.......+..+.+|...|++++|+|++++|+ +|+.||.|++|++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS--------SAGDDGKVRLWKAT 336 (351)
T ss_dssp ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE--------EecCCCcEEEEecC
Confidence 0012246677888999999999999998877 77777999999999
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-40 Score=289.32 Aligned_cols=313 Identities=14% Similarity=0.167 Sum_probs=240.3
Q ss_pred eeeeeeecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEec----cCCCCcccccCCCCCCCeEEEec----------cC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV----EAQPNRHAVLGATNSRPDLILTG----------HQ 86 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~----------h~ 86 (387)
.+......|.+.|++++|+| +++ +||+|+.||.|++||+ .+++....+ .....+.. |.
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTT 108 (425)
T ss_dssp CEECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------C
T ss_pred hhheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCC
Confidence 34455566889999999999 777 9999999999999999 776310000 01222222 55
Q ss_pred CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCc----ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547 87 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 162 (387)
Q Consensus 87 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (387)
+ .|++++|+|++++|++++.||.|++||.. +.......... ..........+. ....++.+.+|+....+..
T Consensus 109 ~-~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 109 N-QVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHII--SMDVENVTILWNVISGTVM 184 (425)
T ss_dssp B-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCCSCEEEEEECTTSSEEE--EEETTCCEEEEETTTTEEE
T ss_pred C-ceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeeccCCCccEEEEEECCCCCEEE--EEecCCeEEEEECCCCcEE
Confidence 4 79999999999999999999999999943 32222211110 001111111111 1223567778888888887
Q ss_pred eeecCCCCC---------------eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC
Q 016547 163 GIYNGHEDT---------------VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 227 (387)
Q Consensus 163 ~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (387)
..+..+... +.++.|+|++ .+++++.+|.|++||+++++ ....+..|...|.+++|+| ++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~ 259 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TN 259 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TT
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CC
Confidence 888777776 9999999986 58899999999999999876 4566778999999999999 99
Q ss_pred CeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547 228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 307 (387)
Q Consensus 228 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 307 (387)
++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++ ++++++.|+.|++||++..
T Consensus 260 ~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~----------- 320 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGN------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN----------- 320 (425)
T ss_dssp TEEEEEETTSCEEEECSSS------BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT-----------
T ss_pred CEEEEEcCCCEEEEEECCC------CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC-----------
Confidence 9999999999999999998 88889999999999999999999 4678999999999999875
Q ss_pred CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccch-------------------
Q 016547 308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE------------------- 368 (387)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~------------------- 368 (387)
..+..+..|...|.+++|+|++++++ +++.||.|++||+. .++
T Consensus 321 ----~~~~~~~~~~~~i~~~~~s~~~~~l~--------~~~~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~ 382 (425)
T 1r5m_A 321 ----TLLALSIVDGVPIFAGRISQDGQKYA--------VAFMDGQVNVYDLK------KLNSKSRSLYGNRDGILNPLPI 382 (425)
T ss_dssp ----EEEEEEECTTCCEEEEEECTTSSEEE--------EEETTSCEEEEECH------HHHC--------------CEEC
T ss_pred ----cEeEecccCCccEEEEEEcCCCCEEE--------EEECCCeEEEEECC------CCccceeeeecccccccCcccc
Confidence 34666778999999999999998877 66667999999998 566
Q ss_pred -hhhhhhccCc--eEEEeeecC
Q 016547 369 -VLAELEKFKA--HVISCTSKP 387 (387)
Q Consensus 369 -~~~~~~~~~~--~v~~~~f~P 387 (387)
++..+.+|.. .|.+++|+|
T Consensus 383 ~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 383 PLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp CEEEEECCTTCCCCEEEEEECT
T ss_pred hhhhhhcCcccCCceEEEEccC
Confidence 7888899976 999999987
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-39 Score=307.75 Aligned_cols=271 Identities=21% Similarity=0.290 Sum_probs=238.1
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++ .....+.+|.. .|.+++|+|++++|++
T Consensus 7 ~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 72 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV 72 (814)
T ss_dssp EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred eeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCC-cEEEEEEeCCCCEEEE
Confidence 45568999999999999 8999999999999999999988 67788889987 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.||.|++||+.++. ....+.+|...|.+++|+|++ .+
T Consensus 73 ~~~dg~i~vw~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~s~~~-~~ 111 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY 111 (814)
T ss_dssp EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred EeCCCeEEEEECCCCc----------------------------------------EEEEEecCCCCEEEEEEeCCC-CE
Confidence 9999999999997542 336677899999999999999 78
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 263 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~- 263 (387)
+++++.||.|++||++++. .....+..|...|.+++|+|.++..|++++.||.|++||++. ......+..+.
T Consensus 112 l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~ 184 (814)
T 3mkq_A 112 VLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE 184 (814)
T ss_dssp EEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred EEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCCC
Confidence 9999999999999998764 255677789999999999996678999999999999999987 66666666554
Q ss_pred ceEEEEEEcC--CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 264 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 264 ~~i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
..+.+++|+| ++.+ +++++.||.|++||++.. .....+.+|...|.+++|+|++++++
T Consensus 185 ~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~---- 244 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIII---- 244 (814)
T ss_dssp TCCCEEEECCSTTCCE-EEEECTTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEE----
T ss_pred CCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE----
Confidence 8899999999 8885 679999999999999874 34666788999999999999999777
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.||.|++||+. +++.+..+..|...|++++|+|
T Consensus 245 ----~~~~dg~v~vwd~~------~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 245 ----SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp ----EEETTSCEEEEETT------TCSEEEEECCSSSSEEEEEECT
T ss_pred ----EEeCCCeEEEEECC------CCcEEEEeecCCCcEEEEEEcc
Confidence 66777999999999 7888889999999999999987
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=291.04 Aligned_cols=277 Identities=14% Similarity=0.307 Sum_probs=226.3
Q ss_pred cCCCcEEEEEecCCCCcEEEEe----------cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATH----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 98 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~ 98 (387)
.+...|.+++|+|+...+|++| +.||.|++||+.+.... ++...+ .|.. .|.+++|+|+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~~~-~~~~-~v~~~~~s~~ 78 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIASL-QVDS-KFNDLDWSHN 78 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSCCC-CCSS-CEEEEEECSS
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEEEE-ecCC-ceEEEEECCC
Confidence 3456789999999434599999 89999999999877321 122222 4555 6999999999
Q ss_pred CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
+++|++++.||.|++||+.+... .......+.+|...|.+++|+
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANN------------------------------------AINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTS------------------------------------CCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEccCCeEEEeecccccc------------------------------------cccchhhccCCccceEEEEEc
Confidence 99999999999999999975210 112346678899999999999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCC------Cce-eEEeeccCCCeeEEEecCCC-CCeEEEeeCCCeEEEEEeccCCCC
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGT------SPV-IKVEKAHDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~------~~~-~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
|+++.+|++++.|+.|++||+++.+ ... ......|...|.+++|+| + +.+|++++.||.|++||+++
T Consensus 123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~---- 197 (416)
T 2pm9_A 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-SLAHVFASAGSSNFASIWDLKA---- 197 (416)
T ss_dssp SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-SCTTEEEEESSSSCEEEEETTT----
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-CCCcEEEEEcCCCCEEEEECCC----
Confidence 9844899999999999999998875 221 223457889999999999 6 89999999999999999998
Q ss_pred CCCCceEEeccc------cceEEEEEEcCCCCeeEEEecCCC---eEEEEeCCCCCceeccCCCCCCCCceeeeeec-cC
Q 016547 251 GVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GH 320 (387)
Q Consensus 251 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 320 (387)
++.+..+..+ ...|.+++|+|++..++++++.|+ .|++||++..... ...+. +|
T Consensus 198 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~--------------~~~~~~~~ 261 (416)
T 2pm9_A 198 --KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP--------------LQTLNQGH 261 (416)
T ss_dssp --TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC--------------SBCCCSCC
T ss_pred --CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC--------------cEEeecCc
Confidence 7888888776 788999999999866788999998 9999999974322 33445 79
Q ss_pred CCCeeEEEEcc-CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 321 RDKVVDFHWNA-SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 321 ~~~v~~~~~~~-~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
...|++++|+| ++.+++ +++.||.|++||+. +++++.++.+|...|.+++|+|
T Consensus 262 ~~~v~~~~~s~~~~~~l~--------s~~~dg~v~~wd~~------~~~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLL--------SSGRDNTVLLWNPE------SAEQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp SSCEEEEEECSSCSSCEE--------EEESSSEEEEECSS------SCCEEEEEECSSSCCCCEEECT
T ss_pred cCceeEEEeCCCCCCeEE--------EEeCCCCEEEeeCC------CCccceeecCCCCceEEEEECC
Confidence 99999999999 676666 56667999999999 7888999999999999999997
No 53
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-38 Score=275.56 Aligned_cols=288 Identities=17% Similarity=0.212 Sum_probs=219.8
Q ss_pred eeeeecCCCcEEEEEecCCCC-cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECC-CC
Q 016547 24 KHKTIIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCP-TE 99 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~-~~ 99 (387)
.....+|.+.|++++|+| ++ ++|++|+.||.|+|||+.+. .....+. +|.. .|.+++|+| ++
T Consensus 66 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~h~~-~v~~~~~~~~~~ 131 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQ------------NKTSFIQGMGPGD-AITGMKFNQFNT 131 (383)
T ss_dssp EEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTST------------TCEEEECCCSTTC-BEEEEEEETTEE
T ss_pred EEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCc------------ccceeeecCCcCC-ceeEEEeCCCCC
Confidence 345568999999999999 55 89999999999999999987 4455554 5777 799999999 78
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
++|++++.|+.|++||+.+.... .......|...|.+++|+|
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSVIQ--------------------------------------VFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCEEE--------------------------------------EEECCCCSSCCEEEEEEET
T ss_pred CEEEEEeCCCEEEEEECCCCceE--------------------------------------EEeccCCCCCCeEEEEECC
Confidence 99999999999999999742110 0111234558899999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
++ .+|++++.|+.|++||++ ++ ....+..|...|.+++|+| ++. +|++++.|+.|++||+++.... ...+..
T Consensus 174 ~~-~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~ 246 (383)
T 3ei3_B 174 SR-QMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK--NSYIAE 246 (383)
T ss_dssp TT-TEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST--TCEEEE
T ss_pred CC-CEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEE
Confidence 98 789999999999999994 33 5677888999999999999 777 9999999999999999973321 234444
Q ss_pred eccccceEEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 259 FEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
+ +|...|.+++|+| ++.+ |++++.|+.|++||++........... ......|...+. +.|+|++..++
T Consensus 247 ~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~p~~~~~~ 315 (383)
T 3ei3_B 247 M-PHEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYDWSKPDQIIIH--------PHRQFQHLTPIK-ATWHPMYDLIV 315 (383)
T ss_dssp E-ECSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTBTTSCSEEEEC--------CBCCCTTSCCCC-CEECSSSSEEE
T ss_pred e-cCCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCCCccccccccc--------cccccccccceE-EeccCCCCceE
Confidence 5 6999999999999 9885 678999999999999875432111000 001122344444 46666666665
Q ss_pred EEecCCC-CCCCCCceEEEEecCCCcccccchhhhhhhc--cCceEEEeeecC
Q 016547 338 VSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEK--FKAHVISCTSKP 387 (387)
Q Consensus 338 ~s~s~d~-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~v~~~~f~P 387 (387)
++.+.|. .+|+.||.|++||+. +++++.++.+ |...+..++|+|
T Consensus 316 ~~~s~dg~~s~s~d~~i~iwd~~------~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 316 AGRYPDDQLLLNDKRTIDIYDAN------SGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp EECBCCTTTCTTCCCCEEEEETT------TCCEEEEECBTTBCSCCCEEEECT
T ss_pred EEecCCcccccCCCCeEEEEecC------CCceeeeecCCCCCceEEEEEEec
Confidence 5443221 156688999999999 7888888887 557788889987
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-39 Score=283.31 Aligned_cols=295 Identities=15% Similarity=0.227 Sum_probs=230.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
|.+.|++++|+| ++++|++|+.||.|++|| .++ .....+.+|.. .|.+++|+|++++|++++.|+
T Consensus 107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~ 171 (425)
T 1r5m_A 107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTG------------ALLNVLNFHRA-PIVSVKWNKDGTHIISMDVEN 171 (425)
T ss_dssp -CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTS------------CEEEEECCCCS-CEEEEEECTTSSEEEEEETTC
T ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCC------------CeeeeccCCCc-cEEEEEECCCCCEEEEEecCC
Confidence 688999999999 889999999999999999 344 56777888887 799999999999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCC-------CC----CCcee-----ccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547 110 SVVLWSIQDHITSSATDPATAKSA-------GS----SGSII-----KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 173 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~-------~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 173 (387)
.|++||+.++.............. .. ...+. .......++.+.+++....+....+..|...|.
T Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS 251 (425)
T ss_dssp CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE
Confidence 999999987754433222111100 00 00000 011122355677778888888888899999999
Q ss_pred EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC
Q 016547 174 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 253 (387)
+++|+|++ .+|++++.|+.|++||+++++ ....+..|...|.+++|+| ++ ++++++.||.|++||+++ +
T Consensus 252 ~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~------~ 320 (425)
T 1r5m_A 252 VLEFNDTN-KLLLSASDDGTLRIWHGGNGN--SQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ------N 320 (425)
T ss_dssp EEEEETTT-TEEEEEETTSCEEEECSSSBS--CSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT------T
T ss_pred EEEECCCC-CEEEEEcCCCEEEEEECCCCc--cceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC------C
Confidence 99999998 789999999999999999877 4666778999999999999 77 999999999999999998 8
Q ss_pred CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-----CCCCceeeeeeccCCC--CeeE
Q 016547 254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----TNYPAGLFFQHAGHRD--KVVD 326 (387)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~v~~ 326 (387)
+.+..+..|...|.+++|+|++++ |++++.||.|++||++............ ...+...+..+.+|.. .|++
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 399 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQDGQK-YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD 399 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTTSSE-EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred cEeEecccCCccEEEEEEcCCCCE-EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence 889999999999999999999995 6789999999999998753111100000 0011125677888876 9999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++|+|++++|+ +++.||.|++|+++
T Consensus 400 ~~~s~~~~~l~--------~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 400 LSWNCAGNKIS--------VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECTTSSEEE--------EEESSSCCEEEECC
T ss_pred EEccCCCceEE--------EEecCceEEEEeec
Confidence 99999999877 66667999999986
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-39 Score=284.89 Aligned_cols=274 Identities=13% Similarity=0.098 Sum_probs=204.7
Q ss_pred eecCCCcEEEEEecCC-----CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 27 TIIHPGEVNRIRELPQ-----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
+.+|.+.|++++|+|. ++.+||+|+.||+|+|||+..++...... .....+...+.+|.. .|++++|+++ ..
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~~~~p~~~l~~h~~-~v~sv~~s~~-~~ 279 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KMCEKPSLTLSLADS-LITTFDFLSP-TT 279 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-ECCCSCSEEECCTTT-CEEEEEESSS-SE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-eeecCceEEEEcCCC-CEEEEEecCC-Ce
Confidence 4567899999999994 25799999999999999998764221000 001135567889987 7999999986 48
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE--EEcc
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV--TFCP 179 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 179 (387)
|++|+.||+|++||++++. .+...+.+|...|.++ .|+|
T Consensus 280 lasgs~DgtV~lWD~~~~~---------------------------------------~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPE---------------------------------------VPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp EEEEETTSEEEEEETTBCS---------------------------------------SCSEEEECSSSCEEEEEEECCT
T ss_pred EEEEeCCCEEEEEECCCCC---------------------------------------CceEEeecccccEEEEEEEcCC
Confidence 9999999999999997531 1224578899999999 5677
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCC--CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
++.++|++++.|++|++||+++.+ ....+.+|.. .|.+++|+| ++..+++++.|+.|++||+++ +.++.
T Consensus 321 ~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~------~~~~~ 391 (524)
T 2j04_B 321 FEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA------AFAVH 391 (524)
T ss_dssp TSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC------TTCCE
T ss_pred CCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc------cccce
Confidence 654789999999999999998876 3334445543 588999999 899999999999999999998 77888
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee-c------------cCCCCCC----------------
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV-E------------QGPRTTN---------------- 308 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~-~------------~~~~~~~---------------- 308 (387)
.+.+|...|++++|+|+++. |++|+.||.|++||+...-... . .....+.
T Consensus 392 ~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~ 470 (524)
T 2j04_B 392 PLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLT 470 (524)
T ss_dssp EEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--
T ss_pred eeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccc
Confidence 88899999999999999996 5799999999999975421110 0 0000000
Q ss_pred CCceeeeeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCCCCceEEEEecC
Q 016547 309 YPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....++..+.+|...|.+++|+|+++ .+++ +|+.||.|+||++.
T Consensus 471 ~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA-------sg~~~g~vrlw~l~ 516 (524)
T 2j04_B 471 VNDVSKAKIDAHGINITCTKWNETSAGGKCYA-------FSNSAGLLTLEYLS 516 (524)
T ss_dssp -----------CCCSCCCEEECCSTTTTTEEE-------EECTTSEEEEEECS
T ss_pred cCCcceeeecCCCceEEEEECCCCCCccHHHH-------hhccCceEEEEEcc
Confidence 01334566788999999999999975 2344 66677999999998
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-39 Score=285.65 Aligned_cols=289 Identities=14% Similarity=0.220 Sum_probs=202.7
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC------------CCceEEEEE
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------DNAEFALAM 95 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~~v~~~~~ 95 (387)
..|.+.|++++|+| ++++||+|+.||.|+|||+.+.+.... ......+....+.+|. . .|++++|
T Consensus 25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~l~~ 101 (447)
T 3dw8_B 25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRW 101 (447)
T ss_dssp CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECC-CCCEEEE
T ss_pred ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccC-ceEEEEE
Confidence 35789999999999 899999999999999999987732110 0011113567888997 5 6999999
Q ss_pred CCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC------CCCCCcee-ec
Q 016547 96 CPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG------PSVGPRGI-YN 166 (387)
Q Consensus 96 ~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~ 166 (387)
+|++ .+|++++.|++|++||+.+.......... ....+...... ......+... ....+... ..
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL----KEEDGRYRDPT---TVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC----C--------CC---CCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecc----cCccccccCcc---cccceEeccccchheeeeccceEEecc
Confidence 9998 79999999999999999864332110000 00000000000 0000000000 00001112 36
Q ss_pred CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeE-------EeeccCCCeeEEEecCCCC-CeEEEeeCCCe
Q 016547 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------VEKAHDADLHCVDWNPLDD-NLILTGSADNS 238 (387)
Q Consensus 167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~ 238 (387)
+|...|.+++|+|++ .+|++| .|+.|++||++.... ... .+..|...|++++|+| ++ ++|++|+.||.
T Consensus 175 ~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe
Confidence 899999999999998 788888 799999999985431 222 2558999999999999 77 99999999999
Q ss_pred EEEEEeccCCCCCCCCc----eEEeccccc------------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceecc
Q 016547 239 VRMFDRRNLTSNGVGSP----INKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 302 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 302 (387)
|++||+++ +.. +..+..|.. .|.+++|+|++++ |++++. +.|++||++....
T Consensus 251 i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~---- 318 (447)
T 3dw8_B 251 IRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENR---- 318 (447)
T ss_dssp EEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSS----
T ss_pred EEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCcc----
Confidence 99999998 554 678888776 8999999999996 568887 9999999986322
Q ss_pred CCCCCCCCceeeeeeccCCCC---------------eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 303 GPRTTNYPAGLFFQHAGHRDK---------------VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.+..+.+|... +..++|+|++++++ +|+.||.|++||+..
T Consensus 319 ----------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~--------s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 319 ----------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM--------TGSYNNFFRMFDRNT 373 (447)
T ss_dssp ----------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE--------EECSTTEEEEEETTT
T ss_pred ----------ccceeeccccccccccccccccccccceEEEECCCCCEEE--------EeccCCEEEEEEcCC
Confidence 23344555431 33499999999886 777789999999983
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-38 Score=272.72 Aligned_cols=266 Identities=20% Similarity=0.336 Sum_probs=211.8
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
...|.+.|++++|+| ++++|++|+.||.|++||+.++ +....+.+|.. .|.+++| ++++|++++
T Consensus 130 ~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 193 (401)
T 4aez_A 130 ETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ------------TKLRTMAGHQA-RVGCLSW--NRHVLSSGS 193 (401)
T ss_dssp ECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEE--ETTEEEEEE
T ss_pred ecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC------------eEEEEecCCCC-ceEEEEE--CCCEEEEEc
Confidence 334899999999999 8899999999999999999988 67788889987 7999999 568999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.||.|++||++... .....+.+|...|.+++|+|++ .+|+
T Consensus 194 ~dg~i~i~d~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~ 233 (401)
T 4aez_A 194 RSGAIHHHDVRIAN---------------------------------------HQIGTLQGHSSEVCGLAWRSDG-LQLA 233 (401)
T ss_dssp TTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred CCCCEEEEecccCc---------------------------------------ceeeEEcCCCCCeeEEEEcCCC-CEEE
Confidence 99999999997421 2236677899999999999998 8899
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
+++.|+.|++||+++++ ....+..|...|.+++|+|....++++++ .|+.|++||+++ ++++..+. +..
T Consensus 234 s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~~-~~~ 304 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARVNTVD-AGS 304 (401)
T ss_dssp EEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------CCEEEEEE-CSS
T ss_pred EEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------CCEEEEEe-CCC
Confidence 99999999999999876 56677789999999999994456666655 799999999998 78888886 677
Q ss_pred eEEEEEEcCCCCeeEEE-ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 265 AVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
.|.+++|+|++++++++ |+.||.|++||+..... .....+.+|...|.+++|+|++.+++
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-------------~~~~~~~~h~~~v~~~~~s~dg~~l~------ 365 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-------------TKQVDIPAHDTRVLYSALSPDGRILS------ 365 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------------EEEEEEECCSSCCCEEEECTTSSEEE------
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------------eeEEEecCCCCCEEEEEECCCCCEEE------
Confidence 89999999999975533 55899999999987422 23445678999999999999999887
Q ss_pred CCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEee
Q 016547 344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCT 384 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 384 (387)
+++.||.|++|++. +++.+.... .+..+..++.
T Consensus 366 --s~~~dg~i~iw~~~------~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 366 --TAASDENLKFWRVY------DGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp --EECTTSEEEEEECC------C-------------------
T ss_pred --EEeCCCcEEEEECC------CCccccccccccCCCcccee
Confidence 77788999999999 566655443 3334444443
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-39 Score=282.44 Aligned_cols=281 Identities=11% Similarity=0.167 Sum_probs=205.4
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.+|.+.|++++|+|.++++||+|+.||+|+|||+.+.+... ..+....+ +|.. .|.+++|+|++++|++|+.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-DCSS-TVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-ECSS-CEEEEEECTTSSEEEEEET
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-cCCC-CEEEEEEeCCCCEEEEEeC
Confidence 47899999999999677899999999999999998721100 01223333 4766 7999999999999999999
Q ss_pred CCeEEEEEcC---CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cC--CCCCeEEEE--Ec
Q 016547 108 DKSVVLWSIQ---DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NG--HEDTVEDVT--FC 178 (387)
Q Consensus 108 d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~v~~~~--~~ 178 (387)
||.|++||++ ++........ ..+..+ .. +...+.++. ++
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~--------------------------------~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNC--------------------------------ECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEE--------------------------------EEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred CCEEEEEEeccccCCceeecccc--------------------------------ceeEEEEccCcccccCceEEEEEEc
Confidence 9999999995 2211110000 000111 11 556777777 55
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
+++ .++++++.|+.|++||+++++ ....+.. |...|++++|+| ++.+|++|+.||.|++||+++ ++++
T Consensus 180 ~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~ 249 (437)
T 3gre_A 180 EEK-SLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLI 249 (437)
T ss_dssp SSC-EEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEE
T ss_pred CCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEE
Confidence 777 899999999999999999887 5666666 889999999999 999999999999999999998 8888
Q ss_pred EEec-cccceEEEEEEcC----CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee----------eeecc--
Q 016547 257 NKFE-GHSAAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF----------FQHAG-- 319 (387)
Q Consensus 257 ~~~~-~~~~~i~~~~~~~----~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-- 319 (387)
..+. .|...|.+++|+| ++. +|++++.||.|++||++............. ...... ..+.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDE-QPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSS-CCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCC-CCccceecccccccccceecccc
Confidence 8886 7888999996665 455 578999999999999987543222111100 000000 01233
Q ss_pred CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547 320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 375 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 375 (387)
|...|++++|+ ++++++ +|+.||.|++||+. +++.+..+.+
T Consensus 328 ~~~~v~~l~~~-~~~~l~--------s~~~d~~i~~wd~~------~~~~~~~~~~ 368 (437)
T 3gre_A 328 SLNALSTISVS-NDKILL--------TDEATSSIVMFSLN------ELSSSKAVIS 368 (437)
T ss_dssp SGGGGCCEEEE-TTEEEE--------EEGGGTEEEEEETT------CGGGCEEEEC
T ss_pred cCCceEEEEEC-CceEEE--------ecCCCCeEEEEECC------CcccceEEec
Confidence 78889999999 565555 66666999999998 5555555544
No 59
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-38 Score=277.51 Aligned_cols=279 Identities=18% Similarity=0.351 Sum_probs=222.9
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~ 109 (387)
......++++|....++++++.||.|+||++...... ......+.+|.+ .|++++|+| ++++|++|+.||
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~-~V~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSS-CEEEEEECTTCTTEEEEEETTS
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCC-CEEEEEeCCCCCCEEEEEeCCC
Confidence 3445568888855556667899999999999654211 123445788987 799999999 999999999999
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
+|++||+.++.... ....++..+.+|...|.+++|+|++.++|++++
T Consensus 105 ~v~vw~~~~~~~~~---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 105 TVMVWEIPDGGLVL---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp EEEEEECCTTCCSS---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred eEEEEEccCCCCcc---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 99999998653211 011345778899999999999999867899999
Q ss_pred CCCeEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccce-
Q 016547 190 DDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAA- 265 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~- 265 (387)
.||.|++||+++++ ....+ ..|...|.+++|+| ++++|++++.||.|++||+++ ++.+..+ ..|...
T Consensus 152 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 152 CDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTR 222 (402)
T ss_dssp TTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT------TEEEEEEECSSCSSS
T ss_pred CCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC------CceeeeeccCCCCCc
Confidence 99999999999877 55666 67999999999999 999999999999999999998 8888888 678776
Q ss_pred EEEEEEcCCCCeeEEEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 266 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
+.+++|+|++. ++++| +.|+.|++||++...... ......|...+.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~g-- 286 (402)
T 2aq5_A 223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPL-------------SLQELDTSSGVLLPFFDPDTNIVYLCG-- 286 (402)
T ss_dssp CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCS-------------EEEECCCCSSCEEEEEETTTTEEEEEE--
T ss_pred ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCc-------------eEEeccCCCceeEEEEcCCCCEEEEEE--
Confidence 89999999988 46687 789999999998754321 112235677899999999999988644
Q ss_pred CCCCCCCCceEEEEecCCCcccccchh-hhhhhcc--CceEEEeeecC
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEV-LAELEKF--KAHVISCTSKP 387 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~--~~~v~~~~f~P 387 (387)
+.||.|++||+. .+++ +..+..| ..+|.+++|+|
T Consensus 287 -----~~dg~i~i~d~~------~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 287 -----KGDSSIRYFEIT------SEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp -----TTCSCEEEEEEC------SSTTCEEEEEEECCSSCCSEEEECC
T ss_pred -----cCCCeEEEEEec------CCCcceEeecccccCCcccceEEec
Confidence 455999999999 4553 5555544 58999999987
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-38 Score=279.45 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=211.0
Q ss_pred cEEEE-EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 33 EVNRI-RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 33 ~v~~i-~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
.+.++ .|++ ++++|++|+.||.|++||+.++ .....+.+|.. .|++++|+|++++|++++.|+.|
T Consensus 98 ~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i 163 (420)
T 3vl1_A 98 DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVS-EITKLKFFPSGEALISSSQDMQL 163 (420)
T ss_dssp CEEEEEEECS-SSCEEEEEETTSCEEEECTTSC------------EEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEE
T ss_pred CceEEEEEec-CCCEEEEEECCCCEEEEeCCCc------------ceeeecccccC-ccEEEEECCCCCEEEEEeCCCeE
Confidence 44444 5556 8999999999999999999887 56666778887 79999999999999999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
++||+.++. ....+.+|...|.+++|+|++ .+|++++.|
T Consensus 164 ~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d 202 (420)
T 3vl1_A 164 KIWSVKDGS----------------------------------------NPRTLIGHRATVTDIAIIDRG-RNVLSASLD 202 (420)
T ss_dssp EEEETTTCC----------------------------------------CCEEEECCSSCEEEEEEETTT-TEEEEEETT
T ss_pred EEEeCCCCc----------------------------------------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCC
Confidence 999997542 236678899999999999998 789999999
Q ss_pred CeEEEEEccCCCCceeEEeec---c---------------------CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 192 SCLILWDARVGTSPVIKVEKA---H---------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~---~---------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
+.|++||+++++ ....+.. + ...+.+++|+| ++++|++|+.||.|++||+++
T Consensus 203 ~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~- 278 (420)
T 3vl1_A 203 GTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFS- 278 (420)
T ss_dssp SCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTT-
T ss_pred CcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCC-
Confidence 999999999876 4444443 2 34556666788 899999999999999999998
Q ss_pred CCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCee
Q 016547 248 TSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVV 325 (387)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 325 (387)
++.+..+. .|...|.+++|+|+++.+|++++.||.|++||++..... +..+.+ |...|.
T Consensus 279 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--------------~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 279 -----KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--------------VGEFLINEGTPIN 339 (420)
T ss_dssp -----CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--------------SEEEEESTTSCEE
T ss_pred -----CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--------------hhhhhccCCCCce
Confidence 66666664 578899999999999855779999999999999975332 233444 667888
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc---chhhhhhhccCceEEEeeecC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ---DEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+.| +++.+++ +++.||.|++|++........ ......+..|.+.|.+++|+|
T Consensus 340 ~~~~-~~~~~l~--------s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 340 NVYF-AAGALFV--------SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp EEEE-ETTEEEE--------EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred EEEe-CCCCEEE--------EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 8855 4566655 667779999999985321110 112234567888999999987
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-40 Score=282.85 Aligned_cols=258 Identities=11% Similarity=0.136 Sum_probs=199.5
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
.|.++|++++|+| ++++||+|+.||.|++||+.++. .+....+.+|.. .|.+++|+|++++|++++.|
T Consensus 9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSS-CEEEEEECTTTCCEEEEETT
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCc-eEEEEEEeCCCCEEEEEeCC
Confidence 4778999999999 89999999999999999998761 023445678887 79999999999999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
++|++||+.++. .......+..|...|.+++|+|++ .+|+++
T Consensus 77 ~~v~vwd~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 118 (377)
T 3dwl_C 77 RNAYVYEKRPDG-------------------------------------TWKQTLVLLRLNRAATFVRWSPNE-DKFAVG 118 (377)
T ss_dssp SSEEEC-------------------------------------------CCCCEEECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred CeEEEEEcCCCC-------------------------------------ceeeeeEecccCCceEEEEECCCC-CEEEEE
Confidence 999999998643 112335667899999999999998 789999
Q ss_pred cCCCeEEEEEccCCCC-ceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------------CCCC
Q 016547 189 GDDSCLILWDARVGTS-PVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------GVGS 254 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------~~~~ 254 (387)
+.|+.|++||++.++. .....+.. |...|++++|+| ++++|++++.||.|++||++..... ..++
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT 197 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhh
Confidence 9999999999988752 12445555 999999999999 9999999999999999999632110 0134
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
++..+ .|...|.+++|+|++++ |++++.||.|++||++....+ ...+..+.+|...|.+++|+|++.
T Consensus 198 ~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 198 VCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQP-----------PRALITVKLSQLPLRSLLWANESA 264 (377)
T ss_dssp EEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTSC-----------EEECCCEECSSSCEEEEEEEETTE
T ss_pred hhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCCc-----------ceeeEeecCCCCceEEEEEcCCCC
Confidence 55566 89999999999999995 679999999999999985331 123566788999999999999987
Q ss_pred eEEEEecCCCCCCCCCceEEEEecC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+++ +|+.|+.+ +|+..
T Consensus 265 ~l~--------~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 265 IVA--------AGYNYSPI-LLQGN 280 (377)
T ss_dssp EEE--------EESSSSEE-EECCC
T ss_pred EEE--------EEcCCcEE-EEEeC
Confidence 665 44444655 67665
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.1e-38 Score=293.04 Aligned_cols=265 Identities=17% Similarity=0.280 Sum_probs=207.2
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
...+.+|.+.|.+++|+| ++++|++|+.||+|+|||+.++ .....+.+|.. .|.+++|+|++++|+
T Consensus 423 ~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~ 488 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG------------VSTRRFVGHTK-DVLSVAFSLDNRQIV 488 (694)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSSCEE
T ss_pred cceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------cceeEEeCCCC-CEEEEEEeCCCCEEE
Confidence 446678999999999999 8999999999999999999988 67788999998 699999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA- 182 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 182 (387)
+|+.|++|++||........ ......+|...|.+++|+|++.
T Consensus 489 s~s~D~~i~iwd~~~~~~~~-------------------------------------~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 489 SASRDRTIKLWNTLGECKYT-------------------------------------ISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEETTSCEEEECTTSCEEEE-------------------------------------ECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEeCCCEEEEEECCCCccee-------------------------------------eccCCCCCCCcEEEEEEeCCCCc
Confidence 99999999999975321100 0011246888999999999862
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
..+++++.|+.|++||+++.+ ....+.+|...|++++|+| ++++|++|+.||.|++||+++ ++.+..+. +
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~------~~~~~~~~-~ 601 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE------GKKLYSLE-A 601 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT------TEEEECCB-C
T ss_pred ceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CceEEEec-C
Confidence 479999999999999999877 6777889999999999999 999999999999999999998 77777776 4
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc----eeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA----GLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
...|.+++|+|++.. ++++ .++.|++||++................. ........+...+++++|+|++++|+
T Consensus 602 ~~~v~~~~~sp~~~~-l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~- 678 (694)
T 3dm0_A 602 NSVIHALCFSPNRYW-LCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF- 678 (694)
T ss_dssp SSCEEEEEECSSSSE-EEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE-
T ss_pred CCcEEEEEEcCCCcE-EEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE-
Confidence 567999999999874 5454 4677999999875332211100000000 00000111223578999999999887
Q ss_pred EecCCCCCCCCCceEEEEecC
Q 016547 339 SVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+|+.||+|+||++.
T Consensus 679 -------sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 -------SGYTDGVIRVWGIG 692 (694)
T ss_dssp -------EEETTSEEEEEEC-
T ss_pred -------EEcCCCeEEEEecc
Confidence 77788999999986
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.4e-37 Score=271.11 Aligned_cols=252 Identities=19% Similarity=0.387 Sum_probs=212.9
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
+.....+|.+.|++++|+| ++++||+|+.||+|+|||++++ +.+..+.+|.. .+.++.+ ++.+|
T Consensus 139 ~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~-~v~~~s~--~~~~l 202 (420)
T 4gga_A 139 QLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGSLSW--NSYIL 202 (420)
T ss_dssp EEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEE--ETTEE
T ss_pred EEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCC-ceEEEee--CCCEE
Confidence 3344557889999999999 8999999999999999999998 77888999987 6777777 57899
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.|+.+++||..... ..+..+.+|...+..+.|+|++
T Consensus 203 ~sgs~d~~i~~~d~~~~~---------------------------------------~~~~~~~~h~~~~~~~~~~~~g- 242 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG- 242 (420)
T ss_dssp EEEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-
T ss_pred EEEeCCCceeEeeecccc---------------------------------------eeeEEecccccceeeeeecCCC-
Confidence 999999999999987432 2235678899999999999999
Q ss_pred eeEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEe--eCCCeEEEEEeccCCCCCCCCceEE
Q 016547 183 QEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
.++++++.|+.+++||...++. ........|...|.+++|+|.+..+++++ +.|+.|++||+++ +.++..
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t------~~~~~~ 316 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSA 316 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT------TEEEEE
T ss_pred CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc------ccccee
Confidence 8899999999999999987653 23456678899999999999666777664 5799999999998 888888
Q ss_pred eccccceEEEEEEcCCCCeeEEE-ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
+..| ..+.++.|+|+++.++++ |+.|+.|+|||+.+. ..+..+.+|.+.|++++|+|++.+|+
T Consensus 317 ~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------------~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 317 VDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred eccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 8754 568899999999986644 347999999999875 45777899999999999999999887
Q ss_pred EEecCCCCCCCCCceEEEEecCC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
||+.|++|+|||+.+
T Consensus 381 --------S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 381 --------SAAADETLRLWRCFE 395 (420)
T ss_dssp --------EEETTTEEEEECCSC
T ss_pred --------EEecCCeEEEEECCC
Confidence 777789999999983
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.7e-38 Score=271.04 Aligned_cols=268 Identities=12% Similarity=0.177 Sum_probs=216.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK 107 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~ 107 (387)
+|.+.|++++|+| ++++|++|+.||.|++||+.+.... .....+.+|.. .|.+++|+|+++ +|++++.
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSS-CEEEEEEEESSSEEEEEEET
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccceeeeecCC-ceEEEEECCCCCcEEEEEcC
Confidence 7999999999999 8899999999999999999887210 12455667876 799999999999 9999999
Q ss_pred CCeEEEEEc-CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC--CCCCeEEEEEccCCCee
Q 016547 108 DKSVVLWSI-QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 108 d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~ 184 (387)
||.|++||+ .++. ...+.+ |...|.+++|+| + .+
T Consensus 78 dg~i~~wd~~~~~~-----------------------------------------~~~~~~~~~~~~v~~l~~~~-~-~~ 114 (342)
T 1yfq_A 78 QGEILKVDLIGSPS-----------------------------------------FQALTNNEANLGICRICKYG-D-DK 114 (342)
T ss_dssp TSCEEEECSSSSSS-----------------------------------------EEECBSCCCCSCEEEEEEET-T-TE
T ss_pred CCeEEEEEeccCCc-----------------------------------------eEeccccCCCCceEEEEeCC-C-CE
Confidence 999999999 6532 145566 999999999999 6 78
Q ss_pred EEEecCCCeEEEEEccC---------CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc-CCCCCCCC
Q 016547 185 FCSVGDDSCLILWDARV---------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNGVGS 254 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~ 254 (387)
+++++.|+.|++||+++ .+ ....+. |...|.+++|+| ++ +++++.|+.|++||++. .. ..
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~----~~ 184 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCED----DN 184 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTT----CC
T ss_pred EEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccc----cc
Confidence 99999999999999987 54 233343 889999999998 55 99999999999999986 32 22
Q ss_pred ceEEeccccceEEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---------CCe
Q 016547 255 PINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKV 324 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v 324 (387)
.......|...|.+++|+| +++. +++++.||.|++|+++...... .......+..|. ..|
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGDDY---------NSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGCE-EEEEETTSEEEEEECCTTCCST---------TCTTCEEEECCCCCTTCCSSCCCE
T ss_pred ceeeecCCCCceeEEEECCCCCCE-EEEEecCCcEEEEEEcCCCccc---------ccccceeeecccccccccccceeE
Confidence 3344556888999999999 9985 6789999999999998741000 001233344554 499
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc-CceEEEee
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCT 384 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 384 (387)
++++|+|++++++ +|+.||.|++||+. +++++.++.+| ..+|.+++
T Consensus 255 ~~~~~s~~~~~l~--------~~~~dg~i~vwd~~------~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 255 NSIEFSPRHKFLY--------TAGSDGIISCWNLQ------TRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp EEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSSEEEEEE
T ss_pred EEEEEcCCCCEEE--------EecCCceEEEEcCc------cHhHhhhhhcccCCCceEec
Confidence 9999999999887 66677999999999 78888999998 99999886
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.3e-38 Score=272.05 Aligned_cols=258 Identities=12% Similarity=0.167 Sum_probs=210.4
Q ss_pred eeeeecCCCcEEEEEecCCC----C---cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC----CCceEE
Q 016547 24 KHKTIIHPGEVNRIRELPQN----T---KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFA 92 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~----~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~ 92 (387)
.....+|.+.|++++|+| + + ++|++++.||.|++||+.+.+... ......+..|. ...|.+
T Consensus 55 ~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~ 126 (397)
T 1sq9_A 55 SYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETK-------KVIFEKLDLLDSDMKKHSFWA 126 (397)
T ss_dssp EEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC-------CEEEEEECCSCTTGGGSCEEE
T ss_pred ceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccc-------cccceeecccccccCCCcEEE
Confidence 445568999999999999 6 8 999999999999999999882100 01167788884 237999
Q ss_pred EEEC----CCCCE-EEEecCCCeEEEEEcCC------CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 93 LAMC----PTEPY-VLSGGKDKSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 93 ~~~~----~~~~~-l~s~~~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
++|+ |++++ |++++.||.|++||+.+ ..... ..+
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~ 171 (397)
T 1sq9_A 127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-----------------------------------WSP 171 (397)
T ss_dssp EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-----------------------------------CCC
T ss_pred EEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-----------------------------------ccC
Confidence 9999 99999 99999999999999986 32211 011
Q ss_pred ceee-------cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec---c---CCCeeEEEecCCCCC
Q 016547 162 RGIY-------NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H---DADLHCVDWNPLDDN 228 (387)
Q Consensus 162 ~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~ 228 (387)
...+ ..|...|.+++|+|++ ++++++.||.|++||+++.+ ....+.. | ...|.+++|+| ++.
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~-~~~ 246 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP-QGS 246 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS-STT
T ss_pred cceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECC-CCC
Confidence 1133 4588899999999998 89999999999999999876 5667777 8 99999999999 999
Q ss_pred eEEEeeCC---CeEEEEEeccCCCCCCCCceEEecc-------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 229 LILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 229 ~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
+|++++.| |.|++||+++ ++++..+.. |...|.+++|+|++++ |++++.||.|++||
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWD 319 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEE
T ss_pred EEEEEecCCCCceEEEEECCC------CcccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEEEE
Confidence 99999999 9999999998 888999988 9999999999999996 67999999999999
Q ss_pred CCCCCceeccCCCCCCCCceeeeeec------cC---------------CCCeeEEEEccCC----------CeEEEEec
Q 016547 293 YEKVGKKVEQGPRTTNYPAGLFFQHA------GH---------------RDKVVDFHWNASD----------PWTVVSVS 341 (387)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~~s~s 341 (387)
++.. ..+..+. +| ...|++++|+|++ ++++
T Consensus 320 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~---- 380 (397)
T 1sq9_A 320 VKTK---------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC---- 380 (397)
T ss_dssp TTTT---------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE----
T ss_pred cCCC---------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE----
Confidence 9875 2344444 55 8999999999998 4555
Q ss_pred CCCCCCCCCceEEEEecC
Q 016547 342 DDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~ 359 (387)
+|+.||.|++|++.
T Consensus 381 ----s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 381 ----CVCLDRSIRWFREA 394 (397)
T ss_dssp ----EEETTTEEEEEEEE
T ss_pred ----EecCCCcEEEEEcC
Confidence 66667999999997
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-38 Score=274.31 Aligned_cols=267 Identities=15% Similarity=0.262 Sum_probs=218.0
Q ss_pred cCCCc--EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 29 IHPGE--VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 29 ~h~~~--v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
+|.+. +.+++|++ ..+++++.||.|++||+.++ +....+.......|.+++|+|++++|++|+
T Consensus 89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSG------------SVSALAETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTC------------CEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCC------------cEeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence 45554 34466654 34777889999999999988 555556653334799999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.||.|++||+.++. .+..+.+|...|.+++|. + ..++
T Consensus 154 ~dg~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~--~-~~l~ 190 (401)
T 4aez_A 154 GNGLVDIYDVESQT----------------------------------------KLRTMAGHQARVGCLSWN--R-HVLS 190 (401)
T ss_dssp TTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEEE--T-TEEE
T ss_pred CCCeEEEEECcCCe----------------------------------------EEEEecCCCCceEEEEEC--C-CEEE
Confidence 99999999997532 336677899999999994 3 5899
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+++.||.|++||++.... ....+..|...|.+++|+| ++.+|++|+.||.|++||+++ ..++..+..|...|
T Consensus 191 ~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~v 262 (401)
T 4aez_A 191 SGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKTNHNAAV 262 (401)
T ss_dssp EEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEECCCSSCC
T ss_pred EEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEecCCcceE
Confidence 999999999999985442 5667788999999999999 999999999999999999998 88899999999999
Q ss_pred EEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547 267 LCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC 344 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~ 344 (387)
.+++|+|++..++++++ .|+.|++||++... .+..+ .+...|.+++|+|++++++++
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~---------------~~~~~-~~~~~v~~~~~s~~~~~l~~~----- 321 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA---------------RVNTV-DAGSQVTSLIWSPHSKEIMST----- 321 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---------------EEEEE-ECSSCEEEEEECSSSSEEEEE-----
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---------------EEEEE-eCCCcEEEEEECCCCCeEEEE-----
Confidence 99999999888888865 79999999998752 23333 366789999999999988853
Q ss_pred CCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 345 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 345 ~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|+.||.|++|++... .......+.+|...|.+++|+|
T Consensus 322 -~g~~dg~i~v~~~~~~----~~~~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 322 -HGFPDNNLSIWSYSSS----GLTKQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp -ECTTTCEEEEEEEETT----EEEEEEEEECCSSCCCEEEECT
T ss_pred -eecCCCcEEEEecCCc----cceeEEEecCCCCCEEEEEECC
Confidence 2556799999999831 1233345678999999999987
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3e-37 Score=257.50 Aligned_cols=244 Identities=21% Similarity=0.331 Sum_probs=191.6
Q ss_pred EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 159 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (387)
..+.+|.+ .|++++|+|+|++|++|+.|++|++||+... ..
T Consensus 3 ~~~~~h~~-~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------------------~~ 43 (297)
T 2pm7_B 3 VIANAHNE-MIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------------------TH 43 (297)
T ss_dssp EECCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------------------CB
T ss_pred eeccCCcC-ceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------------------Cc
Confidence 45678887 7999999999999999999999999998642 11
Q ss_pred CCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeC
Q 016547 160 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA 235 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~ 235 (387)
+.+..+.+|.+.|.+++|+++ + .+|++|+.|++|++||+++++......+..|...|.+++|+| + +.+|++++.
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~ 121 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLVASS 121 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred EEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEEEEC
Confidence 234678899999999999864 5 789999999999999998875434566778999999999999 6 789999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC------------CeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK------------SSVFGSSAEDGLLNIWDYEKVGKKVEQG 303 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 303 (387)
||.|++||++... ......+.+|...|.+++|+|++ ..+|++|+.|+.|++||++......
T Consensus 122 d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~--- 194 (297)
T 2pm7_B 122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--- 194 (297)
T ss_dssp TSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE---
T ss_pred CCcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---
Confidence 9999999998731 12245678899999999999973 1257899999999999998743211
Q ss_pred CCCCCCCceeeeeeccCCCCeeEEEEccCC--CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEE
Q 016547 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI 381 (387)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 381 (387)
.+...+.+|...|.+++|+|++ ..+++ +|+.|++|+|||++......... +.....|...|.
T Consensus 195 --------~~~~~l~~H~~~V~~v~~sp~~~~~~~la-------s~s~D~~v~iWd~~~~~~~~~~~-~~~~~~~~~~v~ 258 (297)
T 2pm7_B 195 --------VLESTLEGHSDWVRDVAWSPTVLLRSYMA-------SVSQDRTCIIWTQDNEQGPWKKT-LLKEEKFPDVLW 258 (297)
T ss_dssp --------EEEEEECCCSSCEEEEEECCCCSSSEEEE-------EEETTSCEEEEEESSTTSCCEEE-ESSSSCCSSCEE
T ss_pred --------EEEEEecCCCCceEEEEECCCCCCceEEE-------EEECCCcEEEEEeCCCCCcccee-eeecccCCCcEE
Confidence 2456678999999999999986 34555 55556999999998421000001 111256889999
Q ss_pred EeeecC
Q 016547 382 SCTSKP 387 (387)
Q Consensus 382 ~~~f~P 387 (387)
+++|+|
T Consensus 259 ~~~~s~ 264 (297)
T 2pm7_B 259 RASWSL 264 (297)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999997
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-38 Score=272.74 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=206.9
Q ss_pred cCCCcEEEEEecCCC---CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEE
Q 016547 29 IHPGEVNRIRELPQN---TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS 104 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~---~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s 104 (387)
.|.+.|++++|+|.. +++|++|+.||.|++||+.++ +.+..+.+|.. .|.+++|+| ++++|++
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGN-AINELKFHPRDPNLLLS 133 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCS-CEEEEEECSSCTTEEEE
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCC-cEEEEEECCCCCCEEEE
Confidence 378999999999932 679999999999999999988 67788889987 799999999 8999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee---cCCCCCeEEEEEccCC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---NGHEDTVEDVTFCPSS 181 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 181 (387)
++.||.|++||++++... ..+ ..|...|.+++|+|++
T Consensus 134 ~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~ 173 (366)
T 3k26_A 134 VSKDHALRLWNIQTDTLV----------------------------------------AIFGGVEGHRDEVLSADYDLLG 173 (366)
T ss_dssp EETTSCEEEEETTTTEEE----------------------------------------EEECSTTSCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEEeecCeEE----------------------------------------EEecccccccCceeEEEECCCC
Confidence 999999999999764322 333 5789999999999998
Q ss_pred CeeEEEecCCCeEEEEEccCCCCc--------------------------eeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSP--------------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
.+|++++.||.|++||+++++.. .......|...|.+++|+ ++++++++.
T Consensus 174 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~ 249 (366)
T 3k26_A 174 -EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSC 249 (366)
T ss_dssp -SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECS
T ss_pred -CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEec
Confidence 78999999999999999875410 112223489999999997 569999999
Q ss_pred CCeEEEEEeccCCC--------CCCCCceEEeccccceEEEEEEcCC--CCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547 236 DNSVRMFDRRNLTS--------NGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 305 (387)
Q Consensus 236 dg~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 305 (387)
||.|++||+++... ......+..+..|...|.+++|+|+ +++ |++++.||.|++||+.......
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~----- 323 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM-LALGNQVGKLYVWDLEVEDPHK----- 323 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE-EEEECTTSCEEEEECCSSSGGG-----
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE-EEEEecCCcEEEEECCCCCCcc-----
Confidence 99999999987321 0001347778889999999999999 885 6799999999999998753221
Q ss_pred CCCCCceeeeeeccC--CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 306 TTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 306 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.....+.+| ...|++++|+|++++|+ +|+.||.|++||+.
T Consensus 324 ------~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 324 ------AKCTTLTHHKCGAAIRQTSFSRDSSILI--------AVCDDASIWRWDRL 365 (366)
T ss_dssp ------CEEEEECCTTCCSCEEEEEECTTSSEEE--------EEETTSEEEEEEC-
T ss_pred ------ccceEEcccccCCceEEEEeCCCCCeEE--------EEeCCCEEEEEEec
Confidence 134456666 78999999999999877 67777999999986
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.2e-38 Score=309.76 Aligned_cols=326 Identities=19% Similarity=0.299 Sum_probs=255.9
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.....+|.+.|++++|+| ++++||+|+.||+|++||+.++ +....+.+|.+ .|.+++|+|++++|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~ 673 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG------------EKLLDIKAHED-EVLCCAFSSDDSYIA 673 (1249)
T ss_dssp SEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred eEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEeccCCC-CEEEEEEecCCCEEE
Confidence 445668999999999999 8999999999999999999998 77888999988 799999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+++.||+|++||+.++............ ................++.+.+|+.........+.+|...|.+++|+|
T Consensus 674 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 753 (1249)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence 9999999999999987554433221110 001111111122234567788899988888999999999999999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCce-----------------------------------------------------
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPV----------------------------------------------------- 206 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------------------- 206 (387)
++ .++++++.||.|++||+++++...
T Consensus 754 ~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 754 DD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp ST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred CC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 98 789999999999999987653100
Q ss_pred eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286 (387)
Q Consensus 207 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~ 286 (387)
.....+|...|.+++|+| ++.++++++.||.|++||+.+ +..+..+.+|...|.+++|+|+++. +++++.||
T Consensus 833 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~dg 904 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS------RLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQ 904 (1249)
T ss_dssp EEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred eEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC------CceeeecCCCccceEEEEECCCCCE-EEEEeCCC
Confidence 011126788899999999 999999999999999999998 8899999999999999999999996 56999999
Q ss_pred eEEEEeCCCCCceec-------------------------------------------------cCCCC-----------
Q 016547 287 LLNIWDYEKVGKKVE-------------------------------------------------QGPRT----------- 306 (387)
Q Consensus 287 ~i~vwd~~~~~~~~~-------------------------------------------------~~~~~----------- 306 (387)
.|++||+........ ..+..
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~ 984 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence 999999763110000 00000
Q ss_pred ----CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEE
Q 016547 307 ----TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 382 (387)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 382 (387)
..........+.+|...|++++|+|++++++ +++.||.|++||+. +++.+ .+.+|...|.+
T Consensus 985 i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------s~~~dg~i~vwd~~------~~~~~-~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 985 IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--------SSSEDSVIQVWNWQ------TGDYV-FLQAHQETVKD 1049 (1249)
T ss_dssp CEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--------EECSSSBEEEEETT------TTEEE-CCBCCSSCEEE
T ss_pred EEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--------EEcCCCEEEEEECC------CCceE-EEecCCCcEEE
Confidence 0011233455678999999999999999888 77788999999999 55554 45689999999
Q ss_pred eeecC
Q 016547 383 CTSKP 387 (387)
Q Consensus 383 ~~f~P 387 (387)
++|+|
T Consensus 1050 ~~~~~ 1054 (1249)
T 3sfz_A 1050 FRLLQ 1054 (1249)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99986
No 70
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.8e-37 Score=259.79 Aligned_cols=244 Identities=18% Similarity=0.339 Sum_probs=207.5
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
..+|.+.|.+++|+| ++++|++++.||.|++||+.+.+ ......+..|.. .|.+++|+|++++|++++
T Consensus 93 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 93 CLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAP-ACYALAISPDSKVCFSCC 160 (337)
T ss_dssp CSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSS-CEEEEEECTTSSEEEEEE
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCC-ceEEEEECCCCCEEEEEe
Confidence 347999999999999 88999999999999999998872 124566777876 689999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.||.|++||++++. ....+..|...|.+++|+|++ .+++
T Consensus 161 ~dg~v~~~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~l~ 199 (337)
T 1gxr_A 161 SDGNIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISNDG-TKLW 199 (337)
T ss_dssp TTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SEEE
T ss_pred CCCcEEEEeCCCCc----------------------------------------eeeeeecccCceEEEEECCCC-CEEE
Confidence 99999999997532 235667789999999999998 7899
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+++.||.|++||+++++ ..... .+...+.+++|+| +++++++++.||.|++||++. .+ ...+..|...|
T Consensus 200 ~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~v 268 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------PD-KYQLHLHESCV 268 (337)
T ss_dssp EEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------SC-EEEECCCSSCE
T ss_pred EEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC------CC-eEEEcCCccce
Confidence 99999999999999876 33333 5788999999999 999999999999999999986 43 45677899999
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.+++|+|++++ +++++.||.|++||+..... . ....|...|.+++|+|++++++ +
T Consensus 269 ~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~---------------~-~~~~~~~~v~~~~~s~~~~~l~--------~ 323 (337)
T 1gxr_A 269 LSLKFAYCGKW-FVSTGKDNLLNAWRTPYGAS---------------I-FQSKESSSVLSCDISVDDKYIV--------T 323 (337)
T ss_dssp EEEEECTTSSE-EEEEETTSEEEEEETTTCCE---------------E-EEEECSSCEEEEEECTTSCEEE--------E
T ss_pred eEEEECCCCCE-EEEecCCCcEEEEECCCCeE---------------E-EEecCCCcEEEEEECCCCCEEE--------E
Confidence 99999999995 57899999999999987522 2 2245788999999999999877 6
Q ss_pred CCCCceEEEEecC
Q 016547 347 TGGGGTLQIWRMS 359 (387)
Q Consensus 347 g~~dg~i~iw~~~ 359 (387)
++.||.|++|++.
T Consensus 324 ~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 324 GSGDKKATVYEVI 336 (337)
T ss_dssp EETTSCEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 6677999999974
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.1e-37 Score=273.47 Aligned_cols=285 Identities=19% Similarity=0.315 Sum_probs=226.9
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC--CCCCEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPYV 102 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~--~~~~~l 102 (387)
....+|.+.|++++|+| ++ +|++|+.||+|++||++++ +....+.+|.. .|.+++|+ ++++++
T Consensus 156 ~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 156 LQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG------------CCTHVFEGHNS-TVRCLDIVEYKNIKYI 220 (464)
T ss_dssp EEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEEESSSCEEE
T ss_pred EEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC------------cEEEEECCCCC-ccEEEEEecCCCCCEE
Confidence 34557999999999998 55 8999999999999999988 67788899987 79999998 578999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.||.|++||+.+............ ..... ............+.+|...|.++. +++
T Consensus 221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~--~~~- 280 (464)
T 3v7d_B 221 VTGSRDNTLHVWKLPKESSVPDHGEEHD------YPLVF-----------HTPEENPYFVGVLRGHMASVRTVS--GHG- 280 (464)
T ss_dssp EEEETTSCEEEEECCCCCCC------CC------SSEEE-----------SCGGGCTTEEEEECCCSSCEEEEE--EET-
T ss_pred EEEcCCCcEEEeeCCCCcccccccccCC------cceEe-----------eccCCCeEEEEEccCccceEEEEc--CCC-
Confidence 9999999999999987643322111000 00000 000011223456788999998874 556
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.++++++.||.|++||+++++ ....+.+|...|.+++|+| +++++++|+.||.|++||+++ ++++..+.+|
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h 351 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGH 351 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCC
Confidence 789999999999999999877 6777888999999999999 999999999999999999998 8999999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...|.+++|++ . .+++++.||.|++||++..... .. ..|...+..++|+|++.+++
T Consensus 352 ~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~---------------~~-~~~~~~~~~~~~~~~~~~l~----- 407 (464)
T 3v7d_B 352 TALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRK---------------FS-YHHTNLSAITTFYVSDNILV----- 407 (464)
T ss_dssp SSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEE---------------EE-EECTTCCCEEEEEECSSEEE-----
T ss_pred CCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCcee---------------ee-ecCCCCccEEEEEeCCCEEE-----
Confidence 99999999984 4 4679999999999999875321 11 23666788899999998766
Q ss_pred CCCCCCCCceEEEEecCCCcccccchhhhh-hhccCceEEEeeecC
Q 016547 343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAE-LEKFKAHVISCTSKP 387 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~v~~~~f~P 387 (387)
+|+ ||.|++||+. +++++.. +..|.+.|++++|++
T Consensus 408 ---~~~-dg~i~iwd~~------~g~~~~~~~~~~~~~v~~v~~~~ 443 (464)
T 3v7d_B 408 ---SGS-ENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG 443 (464)
T ss_dssp ---EEE-TTEEEEEETT------TCCEEESCTTTTCSEEEEEEEET
T ss_pred ---Eec-CCeEEEEECC------CCcEEehhhccCCCcEEEEEecC
Confidence 444 5999999999 7888875 678999999999863
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.9e-37 Score=266.43 Aligned_cols=271 Identities=17% Similarity=0.250 Sum_probs=210.2
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-----EeccCCCceEEEEECC-CC
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-----LTGHQDNAEFALAMCP-TE 99 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~~v~~~~~~~-~~ 99 (387)
...+|.+.|++++|+|.++++|++|+.||.|++||+.+......... ..... ..+|.. .|.+++|+| ++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 112 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC----KAVCSIGRDHPDVHRY-SVETVQWYPHDT 112 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE----CEEEEECTTCTTCCSS-CEEEEEECTTCT
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec----cccccccccccccCCC-cEEEEEEccCCC
Confidence 34469999999999997788999999999999999998743221100 00000 124776 799999999 78
Q ss_pred CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
.+|++++.||.|++||+.++... ..+ .+...+.++.|+|
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~----------------------------------------~~~-~~~~~~~~~~~~~ 151 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTA----------------------------------------DVF-NFEETVYSHHMSP 151 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECS
T ss_pred cEEEEEeCCCeEEEeeCCCCccc----------------------------------------eec-cCCCceeeeEeec
Confidence 89999999999999999864321 222 3567899999998
Q ss_pred CCC--eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 180 SSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 180 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
.+. .++++++.|+.|++||+++++ ....+..|...|++++|+| ++. +|++++.||.|++||++... .++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~-----~~~ 223 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRAS-----GCL 223 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSS-----CCS
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCC-----ccc
Confidence 642 489999999999999999887 5667778999999999999 776 69999999999999998732 233
Q ss_pred EEe---------------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC--------------
Q 016547 257 NKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-------------- 307 (387)
Q Consensus 257 ~~~---------------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------------- 307 (387)
..+ ..|...|.+++|+|++++ |++++.||.|++||+..............
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence 333 568899999999999996 56899999999999988544322111000
Q ss_pred ------------------CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 308 ------------------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 308 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
......+..+.+|...|++++|+|++++|+ +|+.||.|++|++.
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY--------SGSRDCNILAWVPS 364 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE--------EEETTSCEEEEEEC
T ss_pred CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE--------EECCCCeEEEEeCC
Confidence 012245667788999999999999999877 67777999999999
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.7e-39 Score=281.35 Aligned_cols=263 Identities=11% Similarity=0.119 Sum_probs=211.0
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
..+++++|+| ++++|++|+.||.|++||+.+.+ ....+..|. .+....|++++++|++++.||.|
T Consensus 57 ~~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~------------~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i 121 (420)
T 3vl1_A 57 DAGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRD------------GSKMLKRAD--YTAVDTAKLQMRRFILGTTEGDI 121 (420)
T ss_dssp BCCTTCEEEE-EETTEEEEEETTEEEEEECCSEE------------TTTTSCSCC--EEEEEEECSSSCEEEEEETTSCE
T ss_pred ccccceeeee-cCCeEEEEEcCCcEEEEEecccc------------eeeEEecCC--ceEEEEEecCCCEEEEEECCCCE
Confidence 3345899999 88899999999999999998873 223334442 45666889999999999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
++||+.++. ....+.+|...|.+++|+|++ .+|++++.|
T Consensus 122 ~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d 160 (420)
T 3vl1_A 122 KVLDSNFNL----------------------------------------QREIDQAHVSEITKLKFFPSG-EALISSSQD 160 (420)
T ss_dssp EEECTTSCE----------------------------------------EEEETTSSSSCEEEEEECTTS-SEEEEEETT
T ss_pred EEEeCCCcc----------------------------------------eeeecccccCccEEEEECCCC-CEEEEEeCC
Confidence 999987532 224557899999999999998 789999999
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---ccceEEE
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLC 268 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~~~~i~~ 268 (387)
+.|++||+++++ ....+.+|...|.+++|+| ++++|++++.||.|++||+++ ++.+..+.. |...+.+
T Consensus 161 ~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 161 MQLKIWSVKDGS--NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp SEEEEEETTTCC--CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEE
T ss_pred CeEEEEeCCCCc--CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccE
Confidence 999999999887 4667788999999999999 999999999999999999998 777777764 3344555
Q ss_pred EE---------------------EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 269 VQ---------------------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 269 ~~---------------------~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
++ |+|++++ +++++.||.|++||++..... ......|...|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFSKEQT--------------IQLPSKFTCSCNSL 296 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEEEETTTCCEE--------------EEECCTTSSCEEEE
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEEEECCCCcee--------------EEcccccCCCceeE
Confidence 44 5788875 679999999999999875322 22335688899999
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc-hhhhhhhc-cCceEEEeeecC
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD-EVLAELEK-FKAHVISCTSKP 387 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~-~~~~~~~~-~~~~v~~~~f~P 387 (387)
+|+|+++.+++ +|+.||.|++||+. ++ .++..+.+ |...|.++.|++
T Consensus 297 ~~~~~~~~~l~-------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~~~v~~~~~~~ 345 (420)
T 3vl1_A 297 TVDGNNANYIY-------AGYENGMLAQWDLR------SPECPVGEFLINEGTPINNVYFAA 345 (420)
T ss_dssp EECSSCTTEEE-------EEETTSEEEEEETT------CTTSCSEEEEESTTSCEEEEEEET
T ss_pred EEeCCCCCEEE-------EEeCCCeEEEEEcC------CCcCchhhhhccCCCCceEEEeCC
Confidence 99999994444 55666999999999 44 34677776 677888887653
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=267.27 Aligned_cols=279 Identities=15% Similarity=0.235 Sum_probs=216.2
Q ss_pred CcceeeeeeecCCCcEEEEEecCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547 19 SPFVKKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 96 (387)
Q Consensus 19 ~~~~~~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~ 96 (387)
.|........+|.+.|++++|+|.. +++|++|+.||.|++||+++.. ......+.+|.. .|.+++|+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~~ 95 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTG-PVLDVCWS 95 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSS-CEEEEEEC
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccC-CEEEEEEC
Confidence 4444455566899999999999944 7999999999999999998731 023367888887 79999999
Q ss_pred CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
|++++|++++.||.|++||+.++.. ..+..|...|.+++
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~v~~~~ 134 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQA-----------------------------------------IQIAQHDAPVKTIH 134 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEE-----------------------------------------EEEEECSSCEEEEE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCc-----------------------------------------eeeccccCceEEEE
Confidence 9999999999999999999986432 33456899999999
Q ss_pred E--ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 177 F--CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 177 ~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
| +|++ .+|++++.||.|++||+++++ ....+..+ ..+.++.+.+ ..+++++.++.+++||++.. ..
T Consensus 135 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~-----~~ 202 (368)
T 3mmy_A 135 WIKAPNY-SCVMTGSWDKTLKFWDTRSSN--PMMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQ-----PS 202 (368)
T ss_dssp EEECSSC-EEEEEEETTSEEEEECSSCSS--CSEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSS-----CE
T ss_pred EEeCCCC-CEEEEccCCCcEEEEECCCCc--EEEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccc-----cc
Confidence 9 8887 889999999999999999887 44555544 3566666654 58889999999999999873 11
Q ss_pred ceEEe-ccccceEEEEEEcCCCCe---eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--------
Q 016547 255 PINKF-EGHSAAVLCVQWSPDKSS---VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-------- 322 (387)
Q Consensus 255 ~~~~~-~~~~~~i~~~~~~~~~~~---ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 322 (387)
....+ ..+...+.++++.++... .+++++.||.|++||++..... .....+.+|..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA------------KDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH------------HHSEEEECSEEC----CCC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc------------ccceeeeeeeccccccccc
Confidence 22222 123344555655554432 2679999999999999875321 12334445544
Q ss_pred ----CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 323 ----KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 323 ----~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.|++++|+|++++++ +|+.||.|++||+. +++++.++.+|..+|.+++|+|
T Consensus 271 ~~~~~v~~~~~sp~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLA--------TVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH 325 (368)
T ss_dssp EEECCEEEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred ccccceEEEEEecCCCEEE--------EEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence 799999999998887 67777999999999 7889999999999999999997
No 75
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-38 Score=292.76 Aligned_cols=263 Identities=19% Similarity=0.288 Sum_probs=216.2
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~ 103 (387)
...+|.+.|++++|+| ++++|++|+.||.|+|||+... .......+.+|.+ .|++++|+|+ +++|+
T Consensus 4 ~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 4 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCTTSCSEEE
T ss_pred ecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcC-ceEEEEecCCCCCCEEE
Confidence 3458999999999999 8889999999999999999843 1156678889987 7999999988 99999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 181 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 181 (387)
+|+.||.|++||+.++.. .....+..|...|.+++|+|+ +
T Consensus 72 s~s~Dg~I~vwd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred EEeCCCeEEEEECCCCcc--------------------------------------cccccccCCCCCeEEEEECCCCCC
Confidence 999999999999975421 123566789999999999999 6
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC------------CCCeEEEeeCCCeEEEEEeccCCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
..+++|+.||.|++||++............|...|.+++|+|. ++.++++|+.||.|++||++....
T Consensus 114 -~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 114 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp -SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred -CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 8899999999999999998854455667789999999999994 389999999999999999997311
Q ss_pred CCCCCceEEeccccceEEEEEEcCC---CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
. ......+.+|...|.+++|+|+ +. ++++++.||.|++||++....... ........|...|++
T Consensus 193 ~--~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 193 T--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWR 259 (753)
T ss_dssp E--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCB----------CCBSSSSCCSSCCCC
T ss_pred c--ceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcce----------eEEeccCCCCCceEE
Confidence 0 1556778899999999999999 66 578999999999999987532211 123334568889999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
++|+|++++++ +|+.||.|++|++..
T Consensus 260 l~~spdg~~l~--------s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 260 ASWSLSGNVLA--------LSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECTTTCCEE--------EECSSSCEECCBCCS
T ss_pred EEEcCCCCEEE--------EEcCCCEEEEEecCC
Confidence 99999999887 777789999999983
No 76
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.5e-37 Score=263.56 Aligned_cols=180 Identities=9% Similarity=0.129 Sum_probs=139.0
Q ss_pred CCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE
Q 016547 151 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI 230 (387)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (387)
+.+|+..+.+.+..+. |...|.+++|+|++ +++++++.+ .+.+|+..+++.........|...|.+++|+| ++.++
T Consensus 159 i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l 234 (365)
T 4h5i_A 159 MRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVL 234 (365)
T ss_dssp EEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEE
T ss_pred EEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEE
Confidence 3333333444445554 67789999999999 788888754 56777777666333344567888999999999 99999
Q ss_pred EEeeCCC----eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547 231 LTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306 (387)
Q Consensus 231 ~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~ 306 (387)
++++.|+ .+++||+...... ......+.+|...|++++|+|+|++ ||+|+.|+.|+|||+++.
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~---------- 301 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKDL---------- 301 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTTT----------
T ss_pred EEEecCCcceeEEeecccccceec--ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCCC----------
Confidence 9999887 6888988762100 1124566788999999999999995 689999999999999875
Q ss_pred CCCCceeeee-eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 307 TNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 307 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+++.. +.+|...|++++|+||+++|+ ||+.|++|+||++..
T Consensus 302 -----~~~~~~~~gH~~~V~~v~fSpdg~~la--------S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 302 -----SMSKIFKQAHSFAITEVTISPDSTYVA--------SVSAANTIHIIKLPL 343 (365)
T ss_dssp -----EEEEEETTSSSSCEEEEEECTTSCEEE--------EEETTSEEEEEECCT
T ss_pred -----cEEEEecCcccCCEEEEEECCCCCEEE--------EEeCCCeEEEEEcCC
Confidence 33444 478999999999999999877 777779999999963
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-36 Score=265.44 Aligned_cols=263 Identities=19% Similarity=0.319 Sum_probs=218.1
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
++.|+|++ + ++||+|. |++|+|||+.++ +....+. +|.. .|++++|+|+|++|++|+.||+|
T Consensus 108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg------------~~~~~~~~~~~~~-~V~sv~fspdg~~lasgs~Dg~v 171 (420)
T 4gga_A 108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEV 171 (420)
T ss_dssp CBCEEECT-T-SEEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSCE
T ss_pred ceeEEECC-C-CEEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-cEEEEEECCCCCEEEEEECCCeE
Confidence 45689987 4 5888875 899999999998 5555554 5555 69999999999999999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
++||++++. .+..+.+|...+.++.+.+ .++++|+.|
T Consensus 172 ~iWd~~~~~----------------------------------------~~~~~~~h~~~v~~~s~~~---~~l~sgs~d 208 (420)
T 4gga_A 172 QLWDVQQQK----------------------------------------RLRNMTSHSARVGSLSWNS---YILSSGSRS 208 (420)
T ss_dssp EEEETTTTE----------------------------------------EEEEECCCSSCEEEEEEET---TEEEEEETT
T ss_pred EEEEcCCCc----------------------------------------EEEEEeCCCCceEEEeeCC---CEEEEEeCC
Confidence 999997543 3466788999999988863 679999999
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 271 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (387)
+.+++||...... ....+.+|...+..+.++| ++.++++++.||.+++||....... ...+.....|...|.+++|
T Consensus 209 ~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~ 284 (420)
T 4gga_A 209 GHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAW 284 (420)
T ss_dssp SEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEE
T ss_pred CceeEeeecccce-eeEEecccccceeeeeecC-CCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeee
Confidence 9999999987653 4667789999999999999 9999999999999999999873211 2356677889999999999
Q ss_pred cCCCCeeEEE--ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547 272 SPDKSSVFGS--SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 349 (387)
Q Consensus 272 ~~~~~~ll~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~ 349 (387)
+|.+..++++ |+.|+.|++||+.+. .+...+. +...+.++.|+|+++.++++ +|+.
T Consensus 285 ~p~~~~~la~~~gs~D~~I~iwd~~t~---------------~~~~~~~-~~~~v~~~~~~~~~~~lv~~------sg~~ 342 (420)
T 4gga_A 285 CPWQSNVLATGGGTSDRHIRIWNVCSG---------------ACLSAVD-AHSQVCSILWSPHYKELISG------HGFA 342 (420)
T ss_dssp CTTCTTEEEEEECTTTCEEEEEETTTT---------------EEEEEEE-CSSCEEEEEEETTTTEEEEE------ECTT
T ss_pred CCCcccEEEEEeecCCCEEEEEeCCcc---------------ccceeec-cccceeeeeecCCCCeEEEE------EecC
Confidence 9988877765 458999999999885 2333333 44578999999999988764 3556
Q ss_pred CceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 350 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 350 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
||.|+|||+. +++++.++.+|.+.|++++|+|
T Consensus 343 d~~I~iwd~~------~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 343 QNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp TCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred CCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence 7999999999 7899999999999999999998
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=261.12 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=214.5
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|.+.|.+++|+| ++++|++++.||.|++||+.++ +....+. |.. .|.+++|+|+++++++
T Consensus 68 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~-~~~-~v~~~~~~~~~~~l~~ 132 (369)
T 3zwl_B 68 GTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG------------QCVATWK-SPV-PVKRVEFSPCGNYFLA 132 (369)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEE-CSS-CEEEEEECTTSSEEEE
T ss_pred hhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEee-cCC-CeEEEEEccCCCEEEE
Confidence 34557999999999999 8899999999999999999988 5666666 554 6999999999999999
Q ss_pred ecCC-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC--CeEEEEE
Q 016547 105 GGKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTF 177 (387)
Q Consensus 105 ~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 177 (387)
++.+ +.|++||+........... ........+..|.. .+.+++|
T Consensus 133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 133 ILDNVMKNPGSINIYEIERDSATHELTK-----------------------------VSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp EECCBTTBCCEEEEEEEEECTTTCCEEE-----------------------------ECSSCSEEEECCTTCCCEEEEEE
T ss_pred ecCCccCCCCEEEEEEecCCccceeecc-----------------------------cccceeeeccCCcCccceeEEEE
Confidence 9998 9999999986533211110 11223345556666 8999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
+|++ .++++++.||.|++||+++.. .....+..|...|.+++|+| ++.+|++++.||.|++||+++ ++.+.
T Consensus 184 ~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~------~~~~~ 254 (369)
T 3zwl_B 184 STKG-KYIIAGHKDGKISKYDVSNNY-EYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST------LQVLK 254 (369)
T ss_dssp CGGG-CEEEEEETTSEEEEEETTTTT-EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEE
T ss_pred cCCC-CEEEEEcCCCEEEEEECCCCc-EeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC------Cceee
Confidence 9998 789999999999999998843 25677778999999999999 999999999999999999998 78888
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCC--------------eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
.+. +...+.+++|+|+++++ ++++.++ .+++||+... ..+..+.+|...
T Consensus 255 ~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------------~~~~~~~~~~~~ 317 (369)
T 3zwl_B 255 KYE-TDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------------EEIGRVQGHFGP 317 (369)
T ss_dssp EEE-CSSCEEEEEECSSSSEE-EEEECCC-------------CEEEEEETTTC---------------CEEEEEECCSSC
T ss_pred eec-CCCCceeEEecCCCceE-EEeecCCCceEEEEecCCCcceeEEEecCCC---------------cchhheecccCc
Confidence 877 78889999999999975 5666676 8999999875 346667889999
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
|++++|+|++++++ +|+.||.|++|++.
T Consensus 318 v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 318 LNTVAISPQGTSYA--------SGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEEECTTSSEEE--------EEETTSEEEEEEEC
T ss_pred EEEEEECCCCCEEE--------EEcCCCeEEEEECc
Confidence 99999999999877 67777999999998
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-37 Score=273.32 Aligned_cols=297 Identities=17% Similarity=0.289 Sum_probs=236.0
Q ss_pred eeeecCCCcE-EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 25 HKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 25 ~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..+.+|.+.| .|+.+ ++++|++|+.||+|++||+.++ +....+.+|.. .|.+++|+ +++++
T Consensus 112 ~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~ 173 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMR--DNIII 173 (445)
T ss_dssp EEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEE--TTEEE
T ss_pred EEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCC------------cEEEEEcCCCC-CEEEEEec--CCEEE
Confidence 4566898875 66654 5789999999999999999988 67788899988 69999997 67999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+|+.||+|++||+.++............................++.+.+|+....+.+..+.+|...|.+++| ++ .
T Consensus 174 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~ 250 (445)
T 2ovr_B 174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-R 250 (445)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-S
T ss_pred EEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-C
Confidence 99999999999998875443332211100000000001222335677888888888888899999999999999 45 6
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
.+++++.||.|++||+++++ ....+..|...|.+++| ++.++++++.||.|++||+++ ++.+..+.+|.
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~ 319 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQ 319 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECCCC
T ss_pred EEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEEEcCCc
Confidence 89999999999999999877 67778889999999998 578999999999999999998 88999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc---CCCCeeEEEEccCCCeEEEEe
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~s~ 340 (387)
..+.++.+++ . ++++++.||.|++||+++.. .+..+.+ |...|++++|++ ++++
T Consensus 320 ~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~--~~l~--- 376 (445)
T 2ovr_B 320 SLTSGMELKD--N-ILVSGNADSTVKIWDIKTGQ---------------CLQTLQGPNKHQSAVTCLQFNK--NFVI--- 376 (445)
T ss_dssp SCEEEEEEET--T-EEEEEETTSCEEEEETTTCC---------------EEEEECSTTSCSSCEEEEEECS--SEEE---
T ss_pred ccEEEEEEeC--C-EEEEEeCCCeEEEEECCCCc---------------EEEEEccCCCCCCCEEEEEECC--CEEE---
Confidence 9999998854 4 46799999999999998752 2334443 888999999964 5555
Q ss_pred cCCCCCCCCCceEEEEecCCCcccccchhhhhh-----hccCceEEEeeecC
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP 387 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~f~P 387 (387)
+|+.||.|++||+. +++.+..+ .+|.+.|++++|+|
T Consensus 377 -----s~~~dg~v~iwd~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 377 -----TSSDDGTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp -----EEETTSEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred -----EEeCCCeEEEEECC------CCceeeeeeccccCCCCceEEEEEecC
Confidence 56666999999999 67777776 57889999999997
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-37 Score=269.40 Aligned_cols=212 Identities=11% Similarity=0.129 Sum_probs=168.1
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++. ...+...+.+|.. .|.+++|+|++++|++
T Consensus 49 ~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~ 117 (377)
T 3dwl_C 49 RTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDG---------TWKQTLVLLRLNR-AATFVRWSPNEDKFAV 117 (377)
T ss_dssp CCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC---------------CCCCEEECCCCSS-CEEEEECCTTSSCCEE
T ss_pred EEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCC---------ceeeeeEecccCC-ceEEEEECCCCCEEEE
Confidence 34457999999999999 78999999999999999999872 1135677788887 7999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCCCe
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 183 (387)
++.|+.|++||+++... ......+.. |...|.+++|+|++ .
T Consensus 118 ~~~d~~i~iwd~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~-~ 159 (377)
T 3dwl_C 118 GSGARVISVCYFEQEND-------------------------------------WWVSKHLKRPLRSTILSLDWHPNN-V 159 (377)
T ss_dssp EESSSCEEECCC------------------------------------------CCCCEEECSSCCSCEEEEEECTTS-S
T ss_pred EecCCeEEEEEECCccc-------------------------------------ceeeeEeecccCCCeEEEEEcCCC-C
Confidence 99999999999975421 112345556 99999999999998 8
Q ss_pred eEEEecCCCeEEEEEccCCC----------------CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 184 EFCSVGDDSCLILWDARVGT----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
+|++++.|+.|++||++... ......+ .|...|++++|+| ++++|++++.||.|++||+++
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~- 236 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSA- 236 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECS-
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCC-
Confidence 89999999999999986322 1133344 8999999999999 999999999999999999998
Q ss_pred CCCCCCCc----eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 248 TSNGVGSP----INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 248 ~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
++. +..+..|...|.+++|+|++++ |++++.++.+ +|+...
T Consensus 237 -----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 237 -----PEQPPRALITVKLSQLPLRSLLWANESAI-VAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp -----TTSCEEECCCEECSSSCEEEEEEEETTEE-EEEESSSSEE-EECCCC
T ss_pred -----CCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEcCCcEE-EEEeCC
Confidence 665 7888899999999999999985 6788766655 777653
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-36 Score=268.77 Aligned_cols=265 Identities=20% Similarity=0.323 Sum_probs=216.9
Q ss_pred eeeeeecCCCcE-EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 23 KKHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 23 ~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.++ +....+.+|.+ .|.+++|++++ +
T Consensus 113 ~~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~------------~~~~~~~~h~~-~V~~l~~~~~~-~ 175 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHGG-I 175 (464)
T ss_dssp EEEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECSTT-E
T ss_pred ceEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCC------------cEEEEEeCCCc-CEEEEEEcCCC-E
Confidence 344667898875 67766 4569999999999999999988 77888999998 79999999988 9
Q ss_pred EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc--
Q 016547 102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-- 179 (387)
Q Consensus 102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 179 (387)
|++|+.||+|++||++++. .+..+.+|...|.+++|++
T Consensus 176 l~s~s~dg~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGC----------------------------------------CTHVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp EEEEETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEEEESS
T ss_pred EEEEeCCCCEEEEECCCCc----------------------------------------EEEEECCCCCccEEEEEecCC
Confidence 9999999999999997543 3366778999999999985
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCc---------------------eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSP---------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 238 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 238 (387)
++ .++++++.||.|++||+++.... ......+|...+.++ ++ +++++++|+.||.
T Consensus 216 ~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 216 NI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNT 291 (464)
T ss_dssp SC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEEEEEETTSC
T ss_pred CC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEEEEEeCCCe
Confidence 55 88999999999999999876532 144566788888877 45 7899999999999
Q ss_pred EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (387)
|++||+++ ++++..+.+|...|.+++|+|+++. +++++.||.|++||+++. ..+..+.
T Consensus 292 i~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~~~~~ 349 (464)
T 3v7d_B 292 LIVWDVAQ------MKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENG---------------ELMYTLQ 349 (464)
T ss_dssp EEEEETTT------TEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTT---------------EEEEEEC
T ss_pred EEEEECCC------CcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC---------------cEEEEEe
Confidence 99999998 8899999999999999999999996 579999999999999875 4567788
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+|...|.+++|++ .+++ +|+.||.|++||+.. ++..... .|...+..++|+|
T Consensus 350 ~h~~~v~~~~~~~--~~l~--------s~s~dg~v~vwd~~~------~~~~~~~-~~~~~~~~~~~~~ 401 (464)
T 3v7d_B 350 GHTALVGLLRLSD--KFLV--------SAAADGSIRGWDAND------YSRKFSY-HHTNLSAITTFYV 401 (464)
T ss_dssp CCSSCEEEEEECS--SEEE--------EEETTSEEEEEETTT------CCEEEEE-ECTTCCCEEEEEE
T ss_pred CCCCcEEEEEEcC--CEEE--------EEeCCCcEEEEECCC------Cceeeee-cCCCCccEEEEEe
Confidence 9999999999984 5555 666679999999993 3333222 2455555556553
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-36 Score=261.66 Aligned_cols=270 Identities=14% Similarity=0.191 Sum_probs=207.8
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.....+|.+.|.+++|+| ++++|++++.||.|++||+++++. .....+..|.. .|.+++|+|++++|+
T Consensus 45 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~-~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 45 VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW----------KPTLVILRINR-AARCVRWAPNEKKFA 112 (372)
T ss_dssp EEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE----------EEEEECCCCSS-CEEEEEECTTSSEEE
T ss_pred eeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCee----------eeeEEeecCCC-ceeEEEECCCCCEEE
Confidence 344557999999999999 889999999999999999987721 12233456766 699999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|+.|++||++...... ........|...|.+++|+|++ .
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~------------------------------------~~~~~~~~~~~~i~~~~~~~~~-~ 155 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWW------------------------------------VCKHIKKPIRSTVLSLDWHPNS-V 155 (372)
T ss_dssp EEETTSSEEEEEEETTTTEE------------------------------------EEEEECTTCCSCEEEEEECTTS-S
T ss_pred EEeCCCEEEEEEecCCCcce------------------------------------eeeeeecccCCCeeEEEEcCCC-C
Confidence 99999999999998542100 0112335688999999999998 7
Q ss_pred eEEEecCCCeEEEEEccC----------------CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 184 EFCSVGDDSCLILWDARV----------------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
++++++.||.|++||++. ........+..|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~- 233 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK- 233 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG-
T ss_pred EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC-
Confidence 899999999999999752 11225667778999999999999 999999999999999999998
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC--CCceeccCCCCC-----------------C
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTT-----------------N 308 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~--~~~~~~~~~~~~-----------------~ 308 (387)
++++..+..|...|.+++|+|++.+ ++++ .|+.|++|+++. +.-......... .
T Consensus 234 -----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 234 -----KMAVATLASETLPLLAVTFITESSL-VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp -----TTEEEEEECSSCCEEEEEEEETTEE-EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred -----CceeEEEccCCCCeEEEEEecCCCE-EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 8899999999999999999999984 5566 799999999987 210000000000 0
Q ss_pred CCceee------eee-ccCCCCeeEEEEccCC----CeEEEEecCCCCCCCCCceEEEEecC
Q 016547 309 YPAGLF------FQH-AGHRDKVVDFHWNASD----PWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 309 ~~~~~~------~~~-~~~~~~v~~~~~~~~~----~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...... ..+ .+|...|++++|.+.. .+++ ||+.||.|++|++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~--------s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC--------TTGMDGGMSIWDVR 360 (372)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE--------EEETTSEEEEEEHH
T ss_pred cccccccCccccccccccccCCcceeEEecCCCcceeeEE--------EecCCCceEEEEec
Confidence 000010 222 4899999999977544 5555 66677999999998
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-37 Score=271.89 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=192.9
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-CceEEEEECCCCCEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV 102 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~~~~~~~l 102 (387)
.....+|.+.|++|+|+|.++++|++|+.||+|++||+++. ........|.. ..+.+++|+|++++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN------------ILRVFASSDTINIWFCSLDVSASSRMV 224 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC------------EEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC------------ceeEEeccCCCCccEEEEEECCCCCEE
Confidence 34556899999999999978899999999999999999765 22222222221 246789999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++|+.||.|++||++.. .+..+.+|...|.+++|+|+++
T Consensus 225 ~~g~~dg~i~~wd~~~~-----------------------------------------~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 225 VTGDNVGNVILLNMDGK-----------------------------------------ELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp EEECSSSBEEEEESSSC-----------------------------------------BCCCSBCCSSCEEEEEECTTCS
T ss_pred EEEeCCCcEeeeccCcc-----------------------------------------eeEEEecccceEEeeeecCCCc
Confidence 99999999999998632 2245678999999999999987
Q ss_pred eeEEEecCCCeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 183 QEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
.++++++.|+.|++||+++.+.. ......+|...|++++|+| ++.+|++++.||.|++||+++ +.....+..
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~~~~~ 336 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPLGLIP 336 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEEEECC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------CccceEEec
Confidence 78999999999999999886632 2233457999999999999 999999999999999999998 666666654
Q ss_pred ccc------eEEEEEEcCCCCe-----------eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee-eccCCCC
Q 016547 262 HSA------AVLCVQWSPDKSS-----------VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDK 323 (387)
Q Consensus 262 ~~~------~i~~~~~~~~~~~-----------ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 323 (387)
|.. .+....|+|++.. +++++..++.|++||..++. .+.. ..+|...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------------~~~~l~~~~~~~ 401 (435)
T 4e54_B 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------------MMCQLYDPESSG 401 (435)
T ss_dssp CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------------EEEEECCSSCCC
T ss_pred ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------------EEEEEeCCCCCc
Confidence 432 1223445555443 33233345689999998752 2333 3468888
Q ss_pred eeEE-EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 324 VVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 324 v~~~-~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
|.++ +|+|++.+|+ +|+ |++|+||++.
T Consensus 402 v~s~~~fspdg~~la--------sg~-d~~i~iW~~~ 429 (435)
T 4e54_B 402 ISSLNEFNPMGDTLA--------SAM-GYHILIWSQQ 429 (435)
T ss_dssp CCCEEEECTTSSCEE--------EEC-SSEEEECCCC
T ss_pred EEEEEEECCCCCEEE--------EEc-CCcEEEEECC
Confidence 8887 6999998765 433 5799999999
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.6e-36 Score=261.54 Aligned_cols=246 Identities=15% Similarity=0.177 Sum_probs=197.9
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--CceEEEEECCCCCEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVL 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~~~~~~~~~~l~ 103 (387)
...+|.+.|.+++|+|.++++|++++.||.|++||+.+. ....+..|.. ..|.+++|+|++++|+
T Consensus 113 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 113 QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-------------VIQVFAKTDSWDYWYCCVDVSVSRQMLA 179 (383)
T ss_dssp CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-------------EEEEEECCCCSSCCEEEEEEETTTTEEE
T ss_pred ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-------------ceEEEeccCCCCCCeEEEEECCCCCEEE
Confidence 334799999999999977899999999999999999854 3344444431 3699999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|+.|++||+.. +.+..+..|...|.+++|+|++..
T Consensus 180 ~~~~d~~i~i~d~~~-----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDG-----------------------------------------HEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEETTSEEEEEETTS-----------------------------------------CEEEEEECSSSCEEEEEECSSCTT
T ss_pred EECCCCCEEEEECCC-----------------------------------------CEEEEeccCCCcEEEEEECCCCCC
Confidence 999999999999842 133667789999999999999944
Q ss_pred eEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547 184 EFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
++++++.|+.|++||+++.+. .....+ .|...|++++|+|.++.+|++++.||.|++||+++ +..+..+..
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~ 291 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------WSKPDQIII 291 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------TTSCSEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------Ccccccccc
Confidence 899999999999999998431 234444 79999999999997789999999999999999998 555555554
Q ss_pred cc-----------------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCC
Q 016547 262 HS-----------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRD 322 (387)
Q Consensus 262 ~~-----------------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 322 (387)
|. ..+..++|+|++++ +++.|+.|++||+.+. ..+..+.+ |..
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~---------------~~~~~l~~~~~~~ 353 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSG---------------GLVHQLRDPNAAG 353 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTC---------------CEEEEECBTTBCS
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCC---------------ceeeeecCCCCCc
Confidence 32 34556777788773 7889999999999875 23445555 567
Q ss_pred CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+..++|+|++.+|+ +|+ ||.|++||++
T Consensus 354 ~~~~~~~s~~g~~l~--------s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 354 IISLNKFSPTGDVLA--------SGM-GFNILIWNRE 381 (383)
T ss_dssp CCCEEEECTTSSEEE--------EEE-TTEEEEEECC
T ss_pred eEEEEEEecCccEEE--------Eec-CCcEEEEecC
Confidence 788889999999876 454 6999999997
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.6e-37 Score=269.60 Aligned_cols=278 Identities=20% Similarity=0.354 Sum_probs=219.0
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
+|...|.|+++ ++++|++|+.||.|++||+.++ +....+.+|.. .|.+++| ++++|++|+.|
T Consensus 131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~l~~--~~~~l~sg~~d 192 (435)
T 1p22_A 131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITGSSD 192 (435)
T ss_dssp SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEEETT
T ss_pred CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCC-cEEEEEE--CCCEEEEEcCC
Confidence 56778999987 6789999999999999999988 67788999987 6899998 78999999999
Q ss_pred CeEEEEEcCCCcCccccCCCcccC--CCCCCceeccCCCCCCCCCCCCCCCCCCCc---eeecCCCCCeEEEEEccCCCe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPR---GIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~ 183 (387)
|+|++||+.++............. ..-... .......++.+.+|+....... ..+.+|...|.+++| ++ .
T Consensus 193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~ 267 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-K 267 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-T
T ss_pred CeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-C
Confidence 999999999876543332211100 000011 1122234567777777666555 677899999999999 44 6
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
++++++.||.|++||+++++ ....+..|...|.+++++ ++++++|+.||.|++||+++ ++++..+.+|.
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~ 336 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC------GACLRVLEGHE 336 (435)
T ss_dssp EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECCCS
T ss_pred EEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCC------CCEEEEEeCCc
Confidence 89999999999999999887 677888999999999984 57999999999999999998 89999999999
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
..|.+++| ++. ++++|+.||.|++||+......... .....+..+.+|.+.|++++| ++.+++
T Consensus 337 ~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~--~~~~l~------ 399 (435)
T 1p22_A 337 ELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQF--DEFQIV------ 399 (435)
T ss_dssp SCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEE--CSSCEE------
T ss_pred CcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc------ccchheeeccCCCCCeEEEEe--CCCEEE------
Confidence 99999999 555 4679999999999999865322110 111256777899999999999 566666
Q ss_pred CCCCCCCceEEEEecC
Q 016547 344 CDSTGGGGTLQIWRMS 359 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~ 359 (387)
+|+.||+|++||+.
T Consensus 400 --s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 400 --SSSHDDTILIWDFL 413 (435)
T ss_dssp --ECCSSSEEEEEC--
T ss_pred --EEeCCCEEEEEECC
Confidence 77888999999998
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-36 Score=280.17 Aligned_cols=304 Identities=17% Similarity=0.282 Sum_probs=238.8
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCc-eEEEEECC--CCCEEEEe
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA-EFALAMCP--TEPYVLSG 105 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-v~~~~~~~--~~~~l~s~ 105 (387)
.|.+.|.+++|+| ++++|++++ ++.|++||++++.. ..+....+.+|.. . |++++|+| ++++|+++
T Consensus 16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~--------~~~~~~~~~~h~~-~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDS--------KVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCC--------SSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEE
T ss_pred CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCC--------ccccceEEecCCC-ceEEEEEECcCCCCCEEEEe
Confidence 6899999999999 889999988 78999999986511 1146678899987 6 99999999 99999999
Q ss_pred cCCCeEEEEEcCCC--------cCccccCC----CcccCCCCCCceeccCCCC--CCCCCCCCCCCCCCCceeecCCCCC
Q 016547 106 GKDKSVVLWSIQDH--------ITSSATDP----ATAKSAGSSGSIIKQSPKP--GDGNDKAADGPSVGPRGIYNGHEDT 171 (387)
Q Consensus 106 ~~d~~i~vwd~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (387)
+.||.|++||+.++ ........ .........+..+...... ..+.+.+|+ ..+....+.+|...
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 99999999999643 11111110 0001111112211111111 123455555 45677788899999
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCC---CeeEEEecCCC-CCeEEEeeCCCeEEEEEeccC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA---DLHCVDWNPLD-DNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~ 247 (387)
|.+++|+|+++.++++++.|+.|++||+.+.+ ....+..|.. .|++++|+| + +++|++++.||.|++||+++
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~- 238 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS- 238 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-
Confidence 99999999985589999999999999998876 6677788988 999999999 8 99999999999999999998
Q ss_pred CCCCCCCceEEe-c---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC---
Q 016547 248 TSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--- 320 (387)
Q Consensus 248 ~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (387)
++.+..+ . .|...|.+++|+ ++++ |++++.|+.|++||++.. ..+..+..+
T Consensus 239 -----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~~wd~~~~---------------~~~~~~~~~~~~ 296 (615)
T 1pgu_A 239 -----GEFLKYIEDDQEPVQGGIFALSWL-DSQK-FATVGADATIRVWDVTTS---------------KCVQKWTLDKQQ 296 (615)
T ss_dssp -----CCEEEECCBTTBCCCSCEEEEEES-SSSE-EEEEETTSEEEEEETTTT---------------EEEEEEECCTTC
T ss_pred -----CCEeEEecccccccCCceEEEEEc-CCCE-EEEEcCCCcEEEEECCCC---------------cEEEEEcCCCCc
Confidence 8888888 5 899999999999 8885 679999999999999874 223344444
Q ss_pred -CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 321 -RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 321 -~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
...+.++.|. ++.+++ +|+.||.|++||+. .++++..+.+|.+.|.+++| |
T Consensus 297 ~~~~~~~~~~~-~~~~l~--------~~~~~g~i~~~d~~------~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 297 LGNQQVGVVAT-GNGRII--------SLSLDGTLNFYELG------HDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp GGGCEEEEEEE-ETTEEE--------EEETTSCEEEEETT------EEEEEEEECCCSSCEEEEET-T
T ss_pred ccCceeEEEeC-CCCeEE--------EEECCCCEEEEECC------CCcEEEEEeCCCCCEEEEEe-c
Confidence 4678888886 677776 66667999999999 78888899999999999998 6
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-38 Score=296.11 Aligned_cols=318 Identities=11% Similarity=0.046 Sum_probs=216.0
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc------------------CCCc
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH------------------QDNA 89 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h------------------~~~~ 89 (387)
.+|.+.|++++|+|.++.+|++|+.||.| +||+++. ++...+..| .. .
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~-~ 213 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN------------EIKQSFIYELPPFAPGGDFSEKTNEKRTP-K 213 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT------------EEEEEECCCBCTTCCCSTTCCCTTSCBCC-C
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC------------ceEEEEecccCCcCCCcccccccccccCC-C
Confidence 57999999999999667899999999999 9999988 444444444 33 6
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc--c-----C------------CCcc----cC-----C--------
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA--T-----D------------PATA----KS-----A-------- 133 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~-----~------------~~~~----~~-----~-------- 133 (387)
|++++|+|+|++|++|+.||+|++||++++..... . . .... .. +
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 99999999999999999999999999987643221 0 0 0000 00 0
Q ss_pred C-CC-----CceeccC-------------------------------CC----------------------------CCC
Q 016547 134 G-SS-----GSIIKQS-------------------------------PK----------------------------PGD 148 (387)
Q Consensus 134 ~-~~-----~~~~~~~-------------------------------~~----------------------------~~~ 148 (387)
+ .. ..+.... .. ..+
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence 0 00 0000000 00 001
Q ss_pred CCCCCCCCCCCCCc-----------------------------------------eeecCCCCCeEEEEEccCCCeeEEE
Q 016547 149 GNDKAADGPSVGPR-----------------------------------------GIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 149 ~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
+.+.+|+....... ..+.+|...+..++|+|++ ++|++
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laS 452 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFIT 452 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEE
Confidence 22333332222111 0123344445555667887 89999
Q ss_pred ecCCCeEEEEEccCCCCce--eEE--ee-----ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC-------
Q 016547 188 VGDDSCLILWDARVGTSPV--IKV--EK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG------- 251 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~--~~~--~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------- 251 (387)
|+.|++|++||+.++.... ... +. +|...|++++|+| ++++||+|+.||+|+|||+.+.....
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 9999999999998875211 111 11 7889999999999 99999999999999999998631000
Q ss_pred --------------------------------CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547 252 --------------------------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 299 (387)
Q Consensus 252 --------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 299 (387)
..+++..+.+|.+.|++++|+|+| + ||+|+.|+.|+|||++.....
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~-lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F-VGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E-EEEEETTSEEEEEETTTTEEE
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E-EEEEeCCCcEEEEECCCCeEE
Confidence 002467788999999999999999 4 789999999999998764211
Q ss_pred eccCCCCCCCCceeeeeec-cCCCCeeEEEEc-----cCC---CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhh
Q 016547 300 VEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWN-----ASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL 370 (387)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~---~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~ 370 (387)
.. ..+..+. +|...|++++|+ ||| .+|+ +|+.|++|++||+.. ..+++.+
T Consensus 610 ~~----------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~--------sgs~D~tv~~wd~~p---~~~g~~~ 668 (902)
T 2oaj_A 610 YM----------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV--------CGTDMGEVITYKILP---ASGGKFD 668 (902)
T ss_dssp EE----------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE--------EEETTSEEEEEEEEE---CGGGCEE
T ss_pred EE----------eehhHhccccccceEEEEEEEEecCCCCCcceEEE--------EEecCCcEEEEEEec---CCCCcEE
Confidence 00 0012333 899999999999 886 4554 566669999999921 1167777
Q ss_pred hhhhccC-----ceEEEee
Q 016547 371 AELEKFK-----AHVISCT 384 (387)
Q Consensus 371 ~~~~~~~-----~~v~~~~ 384 (387)
.++.+|. ++|.+++
T Consensus 669 ~~~~~~~~~~~~~~v~~i~ 687 (902)
T 2oaj_A 669 VQLMDITNVTSKGPIHKID 687 (902)
T ss_dssp EEEEEEEECCSSCCCCEEE
T ss_pred EEecCceecCCCCceEEEE
Confidence 7777774 5666655
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-37 Score=308.23 Aligned_cols=302 Identities=18% Similarity=0.281 Sum_probs=246.8
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.+|.+.|.+++|+| +++++++++.||.|++||+.++ .....+.+|.. .|.+++|+|++++|++++.
T Consensus 837 ~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSR------------LKVADCRGHLS-WVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp CSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred CCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------------ceeeecCCCcc-ceEEEEECCCCCEEEEEeC
Confidence 47999999999999 8899999999999999999988 67788899987 7999999999999999999
Q ss_pred CCeEEEEEcCCCcCccccCCC-----------------------------------------cccCCCCCCceeccCCCC
Q 016547 108 DKSVVLWSIQDHITSSATDPA-----------------------------------------TAKSAGSSGSIIKQSPKP 146 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~ 146 (387)
||.|++|++.+.......... ........+.. ...+.
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~--l~~g~ 980 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY--VAFGD 980 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE--EEEEE
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE--EEEEc
Confidence 999999998643111100000 00000001111 11123
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC
Q 016547 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 226 (387)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (387)
.++.+.+++.........+.+|...|.+++|+|++ .++++++.||.|++||+.+++ ......|...+.+++|+| +
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~v~~~~~~~-~ 1055 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGD---YVFLQAHQETVKDFRLLQ-D 1055 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTE---EECCBCCSSCEEEEEECS-S
T ss_pred CCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc---eEEEecCCCcEEEEEEcC-C
Confidence 45677788888888888899999999999999998 889999999999999999876 334568999999999998 5
Q ss_pred CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306 (387)
Q Consensus 227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~ 306 (387)
..+++++.||.|++||+.+ ++.+..+.+|...|.+++|+|+++. +++++.|+.|++||+....
T Consensus 1056 -~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~s~d~~v~iwd~~~~~--------- 1118 (1249)
T 3sfz_A 1056 -SRLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLLS--------- 1118 (1249)
T ss_dssp -SEEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSS-CEEECCSSCCCEECSSSSS---------
T ss_pred -CcEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCcc---------
Confidence 4678899999999999998 8899999999999999999999996 5799999999999998752
Q ss_pred CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh---------hccC
Q 016547 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---------EKFK 377 (387)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~---------~~~~ 377 (387)
.+..+.+|...|++++|+|++++++ +|+.||.|++||+. +++++..+ .+|.
T Consensus 1119 ------~~~~l~~h~~~v~~~~~s~dg~~la--------t~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~~~~~ 1178 (1249)
T 3sfz_A 1119 ------PLHELKGHNGCVRCSAFSLDGILLA--------TGDDNGEIRIWNVS------DGQLLHSCAPISVEEGTATHG 1178 (1249)
T ss_dssp ------CSBCCCCCSSCEEEEEECSSSSEEE--------EEETTSCCCEEESS------SSCCCCCCCCCC-------CC
T ss_pred ------eeeeeccCCCcEEEEEECCCCCEEE--------EEeCCCEEEEEECC------CCceEEEeccccccccccccC
Confidence 3455678999999999999999877 67777999999999 56655544 6799
Q ss_pred ceEEEeeecC
Q 016547 378 AHVISCTSKP 387 (387)
Q Consensus 378 ~~v~~~~f~P 387 (387)
+.|++++|+|
T Consensus 1179 ~~v~~l~fs~ 1188 (1249)
T 3sfz_A 1179 GWVTDVCFSP 1188 (1249)
T ss_dssp SCCCEEEECT
T ss_pred ceEEEEEECC
Confidence 9999999997
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=249.05 Aligned_cols=263 Identities=20% Similarity=0.334 Sum_probs=215.8
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
.++|+|++ ++ +||+|. |++|+|||++++ +.+..+. +|.. .|++++|+|++++|++|+.||+|
T Consensus 28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg------------~~~~~~~~~~~~~-~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECT-TS-EEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEECC-CC-EEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-eEEEEEECCCCCEEEEEECCCcE
Confidence 47899998 54 788764 899999999998 5555554 4555 69999999999999999999999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
++||+++++ .+..+.+|...+.++.+. + ..+++++.+
T Consensus 92 ~iw~~~~~~----------------------------------------~~~~~~~h~~~~~~~~~~--~-~~l~s~~~~ 128 (318)
T 4ggc_A 92 QLWDVQQQK----------------------------------------RLRNMTSHSARVGSLSWN--S-YILSSGSRS 128 (318)
T ss_dssp EEEETTTTE----------------------------------------EEEEEECCSSCEEEEEEE--T-TEEEEEETT
T ss_pred EEeecCCce----------------------------------------eEEEecCccceEEEeecC--C-CEEEEEecC
Confidence 999998643 336677888888876664 3 579999999
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 271 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (387)
+.+++|+...... ....+.+|...+..+.+.+ ++++|++++.||.|++||+++.... .........+...|.++++
T Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~ 204 (318)
T 4ggc_A 129 GHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAW 204 (318)
T ss_dssp SEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEE
T ss_pred CceEeeecCCCce-eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEe
Confidence 9999999887663 4567788999999999999 9999999999999999999873211 2344566678889999999
Q ss_pred cCCCCeeE--EEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547 272 SPDKSSVF--GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG 349 (387)
Q Consensus 272 ~~~~~~ll--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~ 349 (387)
+|++..++ ++++.++.|++||.+... ......+...+..+.|+|+++.++++ +|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~~~------sg~~ 262 (318)
T 4ggc_A 205 CPWQSNVLATGGGTSDRHIRIWNVCSGA----------------CLSAVDAHSQVCSILWSPHYKELISG------HGFA 262 (318)
T ss_dssp CTTSTTEEEEEECTTTCEEEEEETTTCC----------------EEEEEECSSCEEEEEEETTTTEEEEE------ECTT
T ss_pred cCCCCcEEEEEecCCCCEEEEEeccccc----------------ccccccceeeeeeeeecccccceEEE------EEcC
Confidence 99887654 467789999999998742 22234567789999999999988754 4556
Q ss_pred CceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 350 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 350 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
|+.|++||+. +++++.++.+|.+.|++++|+|
T Consensus 263 d~~i~iwd~~------~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 263 QNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp TCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred CCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence 7999999999 7899999999999999999997
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.6e-37 Score=260.15 Aligned_cols=242 Identities=22% Similarity=0.295 Sum_probs=185.7
Q ss_pred EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 159 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (387)
..+.+|.+ .|++++|+|+|++|++|+.|++|++||+.++..
T Consensus 7 ~~~~~H~~-~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHED-MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------------------- 47 (316)
T ss_dssp -------C-CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------
T ss_pred eecccccC-eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------
Confidence 34678887 799999999999999999999999999975321
Q ss_pred CCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeC
Q 016547 160 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA 235 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~ 235 (387)
..+..+.+|...|.+++|+++ + .+|++|+.|++|++||+++++......+.+|...|++++|+| + +.+|++|+.
T Consensus 48 ~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~ 125 (316)
T 3bg1_A 48 ILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILACGSS 125 (316)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEEECS
T ss_pred EEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEEEcC
Confidence 123567899999999999863 5 789999999999999999875445667778999999999999 6 789999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC-----------------CeeEEEecCCCeEEEEeCCCCCc
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-----------------SSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
||.|++||++.... ......+.+|...|.+++|+|+. + +|++|+.|+.|++||++....
T Consensus 126 D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~ 201 (316)
T 3bg1_A 126 DGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQ 201 (316)
T ss_dssp SSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSC
T ss_pred CCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCc
Confidence 99999999986210 11234567899999999999973 4 578999999999999975321
Q ss_pred eeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC---CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547 299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 375 (387)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 375 (387)
. .....+.+|...|.+++|+|++ ..+++ +|+.||+|++|++...... ......+..
T Consensus 202 ~------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~la-------s~s~D~~v~iw~~~~~~~~--~~~~~~~~~ 260 (316)
T 3bg1_A 202 W------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIA-------SCSQDGRVFIWTCDDASSN--TWSPKLLHK 260 (316)
T ss_dssp E------------EEEECCBCCSSCEEEEECCCCSSCSCCEEE-------EEETTCEEEEEECSSTTCC--CCBCCEEEE
T ss_pred c------------ceeeecccCCCceEEEEecCCCCCCCceEE-------EEcCCCeEEEEEccCcccc--chhhhhhhc
Confidence 1 2355678999999999999986 23445 5556699999999842100 112234567
Q ss_pred cCceEEEeeecC
Q 016547 376 FKAHVISCTSKP 387 (387)
Q Consensus 376 ~~~~v~~~~f~P 387 (387)
|.+.|++++|+|
T Consensus 261 ~~~~v~~v~~sp 272 (316)
T 3bg1_A 261 FNDVVWHVSWSI 272 (316)
T ss_dssp CSSCEEEEEECT
T ss_pred CCCcEEEEEEcC
Confidence 899999999998
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.8e-37 Score=281.67 Aligned_cols=304 Identities=13% Similarity=0.136 Sum_probs=224.7
Q ss_pred eeeecCCC---cEEEEEecCCC-CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE-e---ccCCCceEEEEEC
Q 016547 25 HKTIIHPG---EVNRIRELPQN-TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-T---GHQDNAEFALAMC 96 (387)
Q Consensus 25 ~~~~~h~~---~v~~i~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~v~~~~~~ 96 (387)
....+|.+ .|++++|+| + +++|++++.||.|++||+.++ +.+..+ . .|.. .|.+++|+
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~-~v~~~~~~ 262 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSG------------EFLKYIEDDQEPVQG-GIFALSWL 262 (615)
T ss_dssp EEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTC------------CEEEECCBTTBCCCS-CEEEEEES
T ss_pred eeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCC------------CEeEEecccccccCC-ceEEEEEc
Confidence 34456888 999999999 6 999999999999999999988 566667 5 7776 79999999
Q ss_pred CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCC-------CCceeccCCCCCCCCCCCCCCCCCCCceee----
Q 016547 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS-------SGSIIKQSPKPGDGNDKAADGPSVGPRGIY---- 165 (387)
Q Consensus 97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 165 (387)
++++|++++.|+.|++||+.++................ ....+. ....++.+.+|+....+++..+
T Consensus 263 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 263 -DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII--SLSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE--EEETTSCEEEEETTEEEEEEEECCCS
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE--EEECCCCEEEEECCCCcEEEEEeCCC
Confidence 99999999999999999998765433322210000000 000000 0111223333333333333333
Q ss_pred -----------------------------cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC-------------
Q 016547 166 -----------------------------NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT------------- 203 (387)
Q Consensus 166 -----------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------- 203 (387)
..|...|.+++| +++ ..+++++.|+.|++||+...+
T Consensus 340 ~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~ 417 (615)
T 1pgu_A 340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANND 417 (615)
T ss_dssp SCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred CCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence 456666666777 334 578888888999888876421
Q ss_pred -------------------CceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCce-EEeccc
Q 016547 204 -------------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPI-NKFEGH 262 (387)
Q Consensus 204 -------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~-~~~~~~ 262 (387)
......+ .+...+.+++|+ ++++++++. ||.|++||+.. +... ..+..|
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~------~~~~~~~~~~~ 487 (615)
T 1pgu_A 418 GFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSD------LEVSFDLKTPL 487 (615)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTE------EEEEEECSSCC
T ss_pred CCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc---CCEEEEeecCCCeEEEEECCC------ccccccccCCc
Confidence 0122222 367788899887 789999999 99999999997 4444 667789
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEcc----------
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNA---------- 331 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~---------- 331 (387)
...|.+++|+|++++ |++++.||.|++||+... ..+..+.+ |...|++++|+|
T Consensus 488 ~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 488 RAKPSYISISPSETY-IAAGDVMGKILLYDLQSR---------------EVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTT---------------EEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred cCceEEEEECCCCCE-EEEcCCCCeEEEeeCCCC---------------cceeEeecCCCCceeEEEEcCcccccccccc
Confidence 999999999999995 679999999999999875 33555666 999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc-hhhhhhhccCceEEEeeecC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD-EVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~f~P 387 (387)
++++++ +|+.||.|++||+. .+ +++..+.+|.+.|++++|+|
T Consensus 552 ~~~~l~--------~~~~dg~i~iw~~~------~~~~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 552 EEDLVA--------TGSLDTNIFIYSVK------RPMKIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp SCCEEE--------EEETTSCEEEEESS------CTTCCEEETTSSTTCEEEEEEEE
T ss_pred CCCEEE--------EEcCCCcEEEEECC------CCceechhhhcCccceEEEEEcC
Confidence 888777 66777999999999 45 78888999999999999986
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=261.36 Aligned_cols=292 Identities=12% Similarity=0.059 Sum_probs=210.5
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCC---CcccccCCCC--------------------------------
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP---NRHAVLGATN-------------------------------- 75 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~-------------------------------- 75 (387)
..++.+++|++ ++++|+++ .++.|++||+.+++ ..........
T Consensus 4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999 77777665 57799999998886 2211110000
Q ss_pred ----------CCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcC--CCcCccccCCCcccCCCCCCceecc
Q 016547 76 ----------SRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQ 142 (387)
Q Consensus 76 ----------~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (387)
..+.....+|.+ .|.+++|+|++++| ++++.||.|++||+. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~---------------------- 138 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYS-YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN---------------------- 138 (450)
T ss_dssp ------------------CCCC-CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS----------------------
T ss_pred ccccccCccccCCCCCCCccCC-ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc----------------------
Confidence 000111224444 69999999999996 899999999999997 432
Q ss_pred CCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCee
Q 016547 143 SPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLH 218 (387)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~ 218 (387)
.+..+. .|...|.+++|+|++ .+|++++.+|.|++|++.+.+.. ....+.+|...|+
T Consensus 139 ------------------~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 199 (450)
T 2vdu_B 139 ------------------VLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT 199 (450)
T ss_dssp ------------------CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE
T ss_pred ------------------eeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceE
Confidence 223333 567889999999998 88999999999999999887632 2235678999999
Q ss_pred EEEecCCC---CCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547 219 CVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 219 ~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~ 294 (387)
+++|+| + +.+|++|+.|+.|++||+++ +..+.. +.+|...|.+++|+ ++++ |++++.|+.|++||++
T Consensus 200 ~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 200 DVHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCG-KDYL-LLSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCEEEECCCCSSCEEEEEEC-STTE-EEEEESSSEEEEEETT
T ss_pred EEEEcC-CCCCCcEEEEEcCCCcEEEEECCC------CceeeeeecCCCCceEEEEEC-CCCE-EEEEeCCCeEEEEECC
Confidence 999999 8 89999999999999999998 777777 56899999999999 8885 6799999999999999
Q ss_pred CCCceeccCCCCC--------CCCce--eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547 295 KVGKKVEQGPRTT--------NYPAG--LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 364 (387)
Q Consensus 295 ~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~ 364 (387)
+............ ..++. ...........|.+++|+|+++++++++. .|+.|++|++.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-------~d~~i~iw~~~~~--- 340 (450)
T 2vdu_B 271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-------ATKCIIILEMSEK--- 340 (450)
T ss_dssp TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-------TCSEEEEEEECSS---
T ss_pred CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-------CCCeEEEEEeccC---
Confidence 8543211100000 00000 00000123457999999999998885432 4599999999210
Q ss_pred ccc---hhhhhhhccCceEEEeeecC
Q 016547 365 PQD---EVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 365 ~~~---~~~~~~~~~~~~v~~~~f~P 387 (387)
.+ +.+..+..| +.|.+++|+|
T Consensus 341 -~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 341 -QKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp -STTCEEEEEEEECS-SCEEEEEEET
T ss_pred -CCCceeeccEeccC-CceEEEEecC
Confidence 33 566777777 8899999987
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-35 Score=259.17 Aligned_cols=257 Identities=17% Similarity=0.298 Sum_probs=207.4
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS 104 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s 104 (387)
...+|.+.|++++|+|.++++|++|+.||+|++||+.++..... ...+...+.+|.. .|.+++|+|++ ++|++
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPVITLEGHTK-RVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCSEEEECCSS-CEEEEEECSSBTTEEEE
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCceEEecCCCC-eEEEEEECcCCCCEEEE
Confidence 34579999999999997788999999999999999988732211 1146778899987 79999999998 69999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cCCCCCeEEEEEccCCC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 182 (387)
++.|+.|++||+.++.. ...+ ..|...|.+++|+|++
T Consensus 150 ~~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~- 188 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGAA----------------------------------------VLTLGPDVHPDTIYSVDWSRDG- 188 (402)
T ss_dssp EETTSCEEEEETTTTEE----------------------------------------EEEECTTTCCSCEEEEEECTTS-
T ss_pred EcCCCEEEEEECCCCCc----------------------------------------cEEEecCCCCCceEEEEECCCC-
Confidence 99999999999986432 2455 6789999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEe-eccCCC-eeEEEecCCCCCeEEEe---eCCCeEEEEEeccCCCCCCCCc-e
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDAD-LHCVDWNPLDDNLILTG---SADNSVRMFDRRNLTSNGVGSP-I 256 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~~~~-~ 256 (387)
.+|++++.||.|++||+++++ ....+ ..|... +.++.|+| ++.+|++| +.|+.|++||+++ ... +
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~------~~~~~ 259 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKH------LEEPL 259 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTB------CSSCS
T ss_pred CEEEEEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCcc------ccCCc
Confidence 889999999999999999877 45555 577765 89999999 89999999 7999999999997 332 3
Q ss_pred EEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547 257 NKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335 (387)
Q Consensus 257 ~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (387)
.... .|...+.+++|+|++++++++++.||.|++||+....... ..+..+. |...|.+++|+|++.+
T Consensus 260 ~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~-----------~~l~~~~-~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 260 SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL-----------HYLSMFS-SKESQRGMGYMPKRGL 327 (402)
T ss_dssp EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCE-----------EEEEEEC-CSSCCSEEEECCGGGS
T ss_pred eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcce-----------Eeecccc-cCCcccceEEeccccc
Confidence 3332 4677899999999999877788889999999998753211 1222222 6689999999999887
Q ss_pred EEEEecCCCCCCCCCceEEEEecCC
Q 016547 336 TVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 336 l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
++ + .|+.+++|++..
T Consensus 328 ~~--------s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 328 EV--------N--KCEIARFYKLHE 342 (402)
T ss_dssp CG--------G--GTEEEEEEEEET
T ss_pred ce--------e--cceeEEEEEcCC
Confidence 55 2 347999999874
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=245.45 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=204.2
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
......|.+.|.+++|+| ++++|++|+.||.|++|++.... ..+....+.+|.. .|.++.| ++++|+
T Consensus 52 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~---------~~~~~~~~~~~~~-~i~~~~~--~~~~l~ 118 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATS---------GEDPLYTLIGHQG-NVCSLSF--QDGVVI 118 (313)
T ss_dssp EEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCT---------TSCC-CEECCCSS-CEEEEEE--ETTEEE
T ss_pred EEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecC---------CCCcccchhhccc-CEEEEEe--cCCEEE
Confidence 345567999999999999 88999999999999999998752 1245667888887 6899999 678999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.||.|++||.. .....+..|...+.++.|.|..+.
T Consensus 119 ~~~~d~~i~~~d~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 119 SGSWDKTAKVWKEG------------------------------------------SLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp EEETTSEEEEEETT------------------------------------------EEEEEEECCSSCEEEEEEEETTTT
T ss_pred EEeCCCCEEEEcCC------------------------------------------cEEEecccCCCceeEEEEccCCCC
Confidence 99999999999932 123566789999999999993338
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.+++++.||.|++||.. + ....+.. |...+.+++|+| ++. +++++.||.|++||+++ ++++..+..|
T Consensus 157 ~l~~~~~d~~i~i~d~~--~--~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~ 224 (313)
T 3odt_A 157 KFLTASADKTIKLWQND--K--VIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGH 224 (313)
T ss_dssp EEEEEETTSCEEEEETT--E--EEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT------CCEEEEEECC
T ss_pred EEEEEECCCCEEEEecC--c--eEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc------hhhhhhhhcC
Confidence 89999999999999933 2 3444555 889999999999 777 99999999999999998 8899999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...|.+++|+|++. +++++.||.|++||++.. .....+..|...|.+++|+|++. ++
T Consensus 225 ~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~-~~----- 281 (313)
T 3odt_A 225 ESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG---------------SLKQVITLPAISIWSVDCMSNGD-II----- 281 (313)
T ss_dssp SSCEEEEEECTTSC--EEEEETTSEEEEECTTTC---------------CEEEEEECSSSCEEEEEECTTSC-EE-----
T ss_pred CceEEEEEEecCCC--EEEEecCCEEEEEECCCC---------------ceeEEEeccCceEEEEEEccCCC-EE-----
Confidence 99999999999994 568999999999999885 34566778889999999999997 45
Q ss_pred CCCCCCCCceEEEEecC
Q 016547 343 DCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~ 359 (387)
+++.||.|++|++.
T Consensus 282 ---~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 282 ---VGSSDNLVRIFSQE 295 (313)
T ss_dssp ---EEETTSCEEEEESC
T ss_pred ---EEeCCCcEEEEeCC
Confidence 44556999999999
No 95
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=243.77 Aligned_cols=252 Identities=18% Similarity=0.356 Sum_probs=206.5
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
+..+..+|...|++++|+| ++++||+|+.||+|++||++++ +.+..+.+|.. .+.+ +++++..+
T Consensus 59 ~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~------------~~~~~~~~h~~-~~~~--~~~~~~~l 122 (318)
T 4ggc_A 59 QLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGS--LSWNSYIL 122 (318)
T ss_dssp EEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEE--EEEETTEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCc------------eeEEEecCccc-eEEE--eecCCCEE
Confidence 3444557899999999999 8899999999999999999998 77888999987 4544 45567899
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.++.+++|+..... ..+..+.+|...+..+.+.+++
T Consensus 123 ~s~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~- 162 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG- 162 (318)
T ss_dssp EEEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-
T ss_pred EEEecCCceEeeecCCCc---------------------------------------eeEEEEcCccCceEEEEEcCCC-
Confidence 999999999999987532 2335677899999999999998
Q ss_pred eeEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeE--EEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 183 QEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l--~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
.++++++.|+.|++||+++++. ........+...|.+++++|.....+ ++++.++.|++||.+. ......
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------~~~~~~ 236 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSA 236 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------CCEEEE
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------cccccc
Confidence 7899999999999999987653 23445567888999999999444544 4567789999999987 554444
Q ss_pred eccccceEEEEEEcCCCCeeEEE-ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 259 FEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
. .+...+..+.|+|++..++++ ++.|+.|++||+++. +++..+.+|.+.|++++|+|++++|+
T Consensus 237 ~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------------~~~~~l~gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 237 V-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp E-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred c-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 4 467789999999999876543 457999999999875 45677899999999999999999877
Q ss_pred EEecCCCCCCCCCceEEEEecCC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
|||.||+|+|||+.+
T Consensus 301 --------S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 301 --------SAAADETLRLWRCFE 315 (318)
T ss_dssp --------EEETTTEEEEECCSC
T ss_pred --------EEecCCeEEEEECCC
Confidence 777789999999984
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.5e-35 Score=255.48 Aligned_cols=302 Identities=18% Similarity=0.307 Sum_probs=223.2
Q ss_pred CCcEEEEEecCCCC---------cEEEEecC----CCcEEEEeccCCCCc------------ccc--cCCCCCCC-eEEE
Q 016547 31 PGEVNRIRELPQNT---------KIVATHTD----SPDVLIWDVEAQPNR------------HAV--LGATNSRP-DLIL 82 (387)
Q Consensus 31 ~~~v~~i~~~~~~~---------~~l~t~~~----dg~v~iwd~~~~~~~------------~~~--~~~~~~~~-~~~~ 82 (387)
.-+..++.|.|... .+++.|+. ...|.+.++.-.... ... .+....+. ....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 45668888888331 46777754 346788865411000 000 00011111 3455
Q ss_pred eccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 83 TGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 83 ~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
..|.+ .|++++|+|+ +.+|++++.||.|++||+.+...... ......+
T Consensus 125 ~~h~~-~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------------------~~~~~~~ 173 (430)
T 2xyi_A 125 INHEG-EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------------------PSGECQP 173 (430)
T ss_dssp EEESS-CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------------------TTCCCCC
T ss_pred EcCCC-cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------------------ccccCCC
Confidence 67776 6999999997 67999999999999999975321100 0112345
Q ss_pred ceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----eeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
...+.+|...|.+++|+|++..+|++|+.||.|++||+...... ....+..|...|.+++|+|.++.+|++++.|
T Consensus 174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence 57788999999999999998559999999999999999874321 1345668999999999999668899999999
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 316 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 316 (387)
|.|++||+++... .+++..+..|...|++++|+|++++++++|+.||.|++||++.... .+..
T Consensus 254 g~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------~~~~ 316 (430)
T 2xyi_A 254 QKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------------KLHS 316 (430)
T ss_dssp SEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEE
T ss_pred CeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------CeEE
Confidence 9999999997311 2577788889999999999999988888999999999999997432 3556
Q ss_pred eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc--------chhhhhhhccCceEEEeeecC
Q 016547 317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--------DEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.+|...|++++|+|++++++++++ .||.|+|||+........ .+++..+.+|...|++++|+|
T Consensus 317 ~~~h~~~v~~i~~sp~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 317 FESHKDEIFQVQWSPHNETILASSG-------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEE-------TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred eecCCCCEEEEEECCCCCCEEEEEe-------CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 6789999999999999988777554 459999999984211000 255667788999999999997
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-36 Score=254.45 Aligned_cols=237 Identities=11% Similarity=0.079 Sum_probs=180.1
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
++.+|++|+.||+|++||+.++ +.+..+. . ..|.++.|+|+ +++++.|++|++|+.......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~------------~~~~~~~--~-~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS------------KTITTIT--T-PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS------------SCEEEEE--E-ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCC------------cEEEEEe--c-CCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 7789999999999999999988 5555555 2 25778889988 999999999999998743211
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEcc--CCCeeEEEecCCCeEEEEEc
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDA 199 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~ 199 (387)
++....+.+..+ ..|...|.+++|+| ++ .++++++.||.|++||+
T Consensus 109 -------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 109 -------------------------------LDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSY 156 (343)
T ss_dssp -------------------------------EETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEES
T ss_pred -------------------------------eecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEEC
Confidence 111222222222 36778999999999 88 88999999999999999
Q ss_pred cCCCCceeEEe-eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce-EEecc-ccceEEEEEEcCCCC
Q 016547 200 RVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEG-HSAAVLCVQWSPDKS 276 (387)
Q Consensus 200 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~ 276 (387)
++++ ..... ..+...+++++|+| ++.+|++|+.||.|++||+++ ++.+ ..+.. |...|.+++|+|++.
T Consensus 157 ~~~~--~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 157 EDDS--QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp SSSC--EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred CCCc--EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCC
Confidence 9887 33333 34566899999999 999999999999999999998 6666 77887 999999999999999
Q ss_pred eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee--EEEEccCCCeEEEEecCCCCCCCC-CceE
Q 016547 277 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSVSDDCDSTGG-GGTL 353 (387)
Q Consensus 277 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~s~s~d~~tg~~-dg~i 353 (387)
+ |++++ |+.|++||++....... +..+..|...+. +++|+|++++++ +++. |+.|
T Consensus 228 ~-l~s~~-~~~v~iwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~l~--------~~s~~d~~i 285 (343)
T 3lrv_A 228 W-MVVEC-DQTVVCFDLRKDVGTLA------------YPTYTIPEFKTGTVTYDIDDSGKNMI--------AYSNESNSL 285 (343)
T ss_dssp E-EEEEE-SSBEEEEETTSSTTCBS------------SCCCBC-----CCEEEEECTTSSEEE--------EEETTTTEE
T ss_pred E-EEEEe-CCeEEEEEcCCCCccee------------ecccccccccccceEEEECCCCCEEE--------EecCCCCcE
Confidence 6 56777 55999999998533211 111222333443 699999999888 4444 6999
Q ss_pred EEEecCC
Q 016547 354 QIWRMSD 360 (387)
Q Consensus 354 ~iw~~~~ 360 (387)
++|++..
T Consensus 286 ~v~~~~~ 292 (343)
T 3lrv_A 286 TIYKFDK 292 (343)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 9999963
No 98
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=275.38 Aligned_cols=268 Identities=12% Similarity=0.110 Sum_probs=199.1
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.....+|.+.|++++|+| ++++||+|+.||+|+||+..+. ..... ..|.. .|.+++|+| +++|+
T Consensus 10 ~~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~------------~~~~~-~~~~~-~V~~l~fsp-g~~L~ 73 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV------------EVVIK-LEDRS-AIKEMRFVK-GIYLV 73 (902)
T ss_dssp EEEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC------------EEEEE-CSSCC-CEEEEEEET-TTEEE
T ss_pred cccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc------------EEEEE-cCCCC-CEEEEEEcC-CCEEE
Confidence 445579999999999999 8999999999999999998765 23222 23544 799999999 88999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.|++|++||++++.. +..+. |...|++++|+|++ .
T Consensus 74 S~s~D~~v~lWd~~~~~~----------------------------------------~~~~~-~~~~V~~v~~sp~g-~ 111 (902)
T 2oaj_A 74 VINAKDTVYVLSLYSQKV----------------------------------------LTTVF-VPGKITSIDTDASL-D 111 (902)
T ss_dssp EEETTCEEEEEETTTCSE----------------------------------------EEEEE-CSSCEEEEECCTTC-S
T ss_pred EEECcCeEEEEECCCCcE----------------------------------------EEEEc-CCCCEEEEEECCCC-C
Confidence 999999999999986422 23333 56789999999999 8
Q ss_pred eEEEecCCCeEEEEEccCCCCcee---------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVI---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
++++|+.||.|++||+++++.... ....+|.+.|++++|+|.++..+++|+.||.| +||+++ .+
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~------~~ 184 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE------NE 184 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT------TE
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC------Cc
Confidence 899999999999999987762100 22356889999999999446899999999999 999998 77
Q ss_pred ceEEeccc------------------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC--CCCCc-ee
Q 016547 255 PINKFEGH------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT--TNYPA-GL 313 (387)
Q Consensus 255 ~~~~~~~~------------------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~-~~ 313 (387)
++..+..| ...|.+++|+|+|++ |++++.||.|++||+++........... ...+. ..
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~ 263 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDY 263 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTC
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcC
Confidence 77777655 477999999999985 6799999999999998853321100000 00000 00
Q ss_pred eeeeccCCCCeeEEEEcc----CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 314 FFQHAGHRDKVVDFHWNA----SDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 314 ~~~~~~~~~~v~~~~~~~----~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
......|...|++++|++ ++..++++++.| .....+.+++|++.
T Consensus 264 ~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~--~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 264 IRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI--SRGDNQSLTMIDLG 311 (902)
T ss_dssp CCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS--TTSSCCCEEEEEEE
T ss_pred CCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC--CCCCCceEEEEecC
Confidence 000002456899999964 445777776554 22234589999853
No 99
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-34 Score=271.81 Aligned_cols=252 Identities=20% Similarity=0.335 Sum_probs=212.9
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
....+|.++|++++|+| ++++|++|+.||.|++||+.++ +....+.+|.+ .|.+++|+|++++|++
T Consensus 49 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLS 114 (814)
T ss_dssp EEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEE
T ss_pred EEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEEEEEEeCCCCEEEE
Confidence 44557999999999999 8899999999999999999988 67788899987 6999999999999999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc-CCCe
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQ 183 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 183 (387)
++.||.|++||+.++. .....+.+|...|.+++|+| ++ .
T Consensus 115 ~~~dg~i~vw~~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~-~ 154 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNW---------------------------------------ALEQTFEGHEHFVMCVAFNPKDP-S 154 (814)
T ss_dssp EETTSEEEEEEGGGTS---------------------------------------EEEEEEECCSSCEEEEEEETTEE-E
T ss_pred EcCCCEEEEEECCCCc---------------------------------------eEEEEEcCCCCcEEEEEEEcCCC-C
Confidence 9999999999997531 22356778999999999999 55 8
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
.+++++.||.|++||++.+.. .......+...+.+++|+|. ++.++++++.||.|++||+++ ++.+..+.+|
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~ 227 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGH 227 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECC
T ss_pred EEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCC
Confidence 999999999999999987763 22233344588999999873 578999999999999999998 8889999999
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...|.+++|+|+++. +++++.||.|++||+... .....+..|...+.+++|+|++..++++++
T Consensus 228 ~~~v~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 290 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASG- 290 (814)
T ss_dssp SSCEEEEEECSSSSE-EEEEETTSCEEEEETTTC---------------SEEEEECCSSSSEEEEEECTTCGGGEEEEE-
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------cEEEEeecCCCcEEEEEEccCCCceEEEEE-
Confidence 999999999999995 679999999999999875 345667788899999999999986533322
Q ss_pred CCCCCCCCceEEEEecCC
Q 016547 343 DCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 343 d~~tg~~dg~i~iw~~~~ 360 (387)
.|+.+.+|++..
T Consensus 291 ------~~~~~~~~~~~~ 302 (814)
T 3mkq_A 291 ------FDNGFTVLSLGN 302 (814)
T ss_dssp ------ETTEEEEEECSC
T ss_pred ------eCCCEEEEEcCC
Confidence 236788888763
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-35 Score=251.39 Aligned_cols=245 Identities=20% Similarity=0.339 Sum_probs=196.0
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
++...+.+|.+ .|++++|+|++++|++|+.||.|++||+...
T Consensus 2 ~~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------------------------------- 43 (379)
T 3jrp_A 2 SMVVIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------------------------------- 43 (379)
T ss_dssp ---CCEEECCC-CEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------------------------
T ss_pred CccEEecCCcc-cEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------------------
Confidence 34567889998 7999999999999999999999999999732
Q ss_pred CCCCCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEE
Q 016547 157 PSVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILT 232 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~ 232 (387)
.......+.+|...|++++|+++ + .+|++++.||.|++||+++++......+..|...|.+++|+| + +.+|++
T Consensus 44 -~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~ 120 (379)
T 3jrp_A 44 -THKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLV 120 (379)
T ss_dssp -EEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred -cceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEE
Confidence 12233567889999999999876 6 789999999999999999876445667778999999999999 7 899999
Q ss_pred eeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC-------------CCCeeEEEecCCCeEEEEeCCCCCce
Q 016547 233 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-------------DKSSVFGSSAEDGLLNIWDYEKVGKK 299 (387)
Q Consensus 233 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~ll~s~~~d~~i~vwd~~~~~~~ 299 (387)
++.||.|++||++... ......+..|...|.+++|+| ++. ++++++.||.|++||++.....
T Consensus 121 ~~~d~~i~v~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 121 ASSDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp EETTSEEEEEECCTTS----CCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTE
T ss_pred ecCCCcEEEEecCCCC----ceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcc
Confidence 9999999999999732 245556778999999999999 577 4679999999999999874332
Q ss_pred eccCCCCCCCCceeeeeeccCCCCeeEEEEccC---CCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547 300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS---DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
. .....+.+|...|.+++|+|+ +.+++ +++.||.|++||+...... ....+.....|
T Consensus 196 ~-----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~--------s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~ 255 (379)
T 3jrp_A 196 Y-----------VLESTLEGHSDWVRDVAWSPTVLLRSYLA--------SVSQDRTCIIWTQDNEQGP-WKKTLLKEEKF 255 (379)
T ss_dssp E-----------EEEEEECCCSSCEEEEEECCCCSSSEEEE--------EEETTSCEEEEEESSTTSC-CEEEESSSSCC
T ss_pred e-----------eeEEEEecccCcEeEEEECCCCCCCCeEE--------EEeCCCEEEEEeCCCCCcc-ceeeeeccccC
Confidence 1 345677889999999999999 55555 5566699999999842100 01233344558
Q ss_pred CceEEEeeecC
Q 016547 377 KAHVISCTSKP 387 (387)
Q Consensus 377 ~~~v~~~~f~P 387 (387)
...|++++|+|
T Consensus 256 ~~~v~~~~~s~ 266 (379)
T 3jrp_A 256 PDVLWRASWSL 266 (379)
T ss_dssp SSCEEEEEECS
T ss_pred CCcEEEEEEcC
Confidence 89999999987
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=259.11 Aligned_cols=270 Identities=10% Similarity=0.133 Sum_probs=192.5
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEecc---CCCCcccccCCCCCCCeEEEecc---CCCceEEEE--EC
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE---AQPNRHAVLGATNSRPDLILTGH---QDNAEFALA--MC 96 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~h---~~~~v~~~~--~~ 96 (387)
...++|.+.|++++|+| ++++|++|+.||+|++||++ .++....... ..+..+..+ ....+.++. ++
T Consensus 105 ~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 105 SLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC----ECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp SEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE----EEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred eeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeecccc----ceeEEEEccCcccccCceEEEEEEc
Confidence 34457999999999999 88999999999999999995 4321111000 122222211 122466776 66
Q ss_pred CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC--CCCCeEE
Q 016547 97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVED 174 (387)
Q Consensus 97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 174 (387)
+++.+|++++.|+.|++||++++. .+..+.. |...|++
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~----------------------------------------~~~~~~~~~h~~~v~~ 219 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLE----------------------------------------RLQIIENSPRHGAVSS 219 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCC----------------------------------------EEEEEECCGGGCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCe----------------------------------------eeEEEccCCCCCceEE
Confidence 889999999999999999997542 2355555 8899999
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee-ccCCCeeEEEecCC---CCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL---DDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
++|+|++ .+|++|+.||.|++||+++++ ....+. .|...|++++|+|. ++.+|++|+.||.|++||+++
T Consensus 220 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~---- 292 (437)
T 3gre_A 220 ICIDEEC-CVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK---- 292 (437)
T ss_dssp EEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT----
T ss_pred EEECCCC-CEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC----
Confidence 9999998 899999999999999999866 455544 67889999966551 577999999999999999987
Q ss_pred CCCCceEEecc--------------------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547 251 GVGSPINKFEG--------------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 251 ~~~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 304 (387)
++.+..+.+ |...|.+++|+ +++ +|++++.|+.|++||+...........
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 293 --GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp --TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred --CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCcccceEEec
Confidence 565555543 55668889998 565 567999999999999988654332211
Q ss_pred CCCC----------------------CCceeeeeeccCCCCeeEEEEccC-CCeEEEEecCCCCCCCCCceEEEEe
Q 016547 305 RTTN----------------------YPAGLFFQHAGHRDKVVDFHWNAS-DPWTVVSVSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 305 ~~~~----------------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~s~s~d~~tg~~dg~i~iw~ 357 (387)
.... ...........|...|++++|+++ +..+++ +|+.||.|+||+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~-------s~~~dG~I~iw~ 437 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV-------ACDNSGLIGIFQ 437 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE-------EEETTSCEEEEC
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE-------EEcCCceEEEeC
Confidence 1000 000011122348999999999998 344555 555669999995
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=254.62 Aligned_cols=278 Identities=19% Similarity=0.305 Sum_probs=211.2
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
++.+++|+++.. +....+.+|.+ .|++++|+| ++++|++|+.||.|++||+.+.............
T Consensus 22 ~~~~~v~~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 88 (408)
T 4a11_B 22 ESTRRVLGLELN------------KDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC 88 (408)
T ss_dssp HHHHHHHTEEEC------------TTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE
T ss_pred cCcceeeccccC------------cceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc
Confidence 456788888877 67788889987 799999999 9999999999999999999875432221100000
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 211 (387)
........+|...|.+++|+|++..+|++++.||.|++||+++++ ....+
T Consensus 89 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~- 138 (408)
T 4a11_B 89 ---------------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVF- 138 (408)
T ss_dssp ---------------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEE-
T ss_pred ---------------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceec-
Confidence 000011246899999999999555899999999999999999877 34443
Q ss_pred ccCCCeeEEEecCC--CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547 212 AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289 (387)
Q Consensus 212 ~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~ 289 (387)
.+...+.++.++|. ++.++++++.||.|++||+++ ++.+..+..|...|.+++|+|+++++|++++.||.|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 47788999999883 233999999999999999998 8888999999999999999999998788999999999
Q ss_pred EEeCCCCCceeccCCC-CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc----
Q 016547 290 IWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---- 364 (387)
Q Consensus 290 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~---- 364 (387)
+||++........... .............+|...|.+++|+|++++++ +++.||.|++||+......
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL--------TVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTTCCBCCCCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE--------EecCCCeEEEEECCCCccceecc
Confidence 9999876433221111 11111112233467889999999999999887 6666789999998743211
Q ss_pred -------------------------------------ccchhhhhhhccCceEEEeeecC
Q 016547 365 -------------------------------------PQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 365 -------------------------------------~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+++++..+.+|.+.|++++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 24466777788999999999987
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-34 Score=245.21 Aligned_cols=236 Identities=25% Similarity=0.399 Sum_probs=196.7
Q ss_pred CCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 155 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (387)
....+|++|.+ .|++|+|+|+ +++|+||+.|++|++||+.+....
T Consensus 29 ~l~~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------------------------- 74 (340)
T 4aow_A 29 TLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------------------------- 74 (340)
T ss_dssp EEEEEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred EEEEEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence 34557999998 7999999997 689999999999999999754321
Q ss_pred CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
...+...+.+|...|.+++|+|++ .+|++++.|+.|++|+..... .......+...+..+.+++ .+.+|++++.
T Consensus 75 --~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~ 148 (340)
T 4aow_A 75 --YGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSS-DNRQIVSGSR 148 (340)
T ss_dssp --SEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSSCEEEEET
T ss_pred --cceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc--eeeeecCCCCceeEEEEee-cCccceeecC
Confidence 122346778999999999999998 889999999999999998876 5566667788899999999 9999999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCC-eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 314 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 314 (387)
|+.+++||.... ........+|...+..++|++++. .++++++.|+.|++||++.. ...
T Consensus 149 d~~~~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------------~~~ 208 (340)
T 4aow_A 149 DKTIKLWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------------KLK 208 (340)
T ss_dssp TSCEEEECTTSC-----EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------------EEE
T ss_pred CCeEEEEEeCCC-----ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------------cee
Confidence 999999998762 234445677899999999998754 35678999999999999875 456
Q ss_pred eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..+.+|...|++++|+|++++++ +|+.||.|++||+. ..+++..+.. ...|.++.|+|
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~--------s~s~Dg~i~iwd~~------~~~~~~~~~~-~~~v~~~~~~~ 266 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCA--------SGGKDGQAMLWDLN------EGKHLYTLDG-GDIINALCFSP 266 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEE--------EEETTCEEEEEETT------TTEEEEEEEC-SSCEEEEEECS
T ss_pred eEecCCCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEec------cCceeeeecC-CceEEeeecCC
Confidence 67789999999999999999877 67777999999999 6777777664 46899999986
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-34 Score=254.30 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=218.9
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
....+|.+.|.+++|+ +++|++|+.||+|++||+.++ +....+.+|.. .|.++.|+ ++++++
T Consensus 153 ~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~s 214 (445)
T 2ovr_B 153 RTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG------------ECIHTLYGHTS-TVRCMHLH--EKRVVS 214 (445)
T ss_dssp EECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEE--TTEEEE
T ss_pred EEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC------------cEEEEECCCCC-cEEEEEec--CCEEEE
Confidence 3455899999999996 469999999999999999988 67788899987 68999994 678999
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCccc--CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
|+.||.|++||+.++............ .....+.. ......++.+.+|+....+.+..+.+|...|.++.| ++
T Consensus 215 ~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~- 289 (445)
T 2ovr_B 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG- 289 (445)
T ss_dssp EETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC--EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCE--EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-
Confidence 999999999999876543332211100 00001111 112234667788888888888889999999999999 55
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG- 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~- 261 (387)
..+++++.||.|++||+++++ ....+..|...+.++.++ ++++++|+.||.|++||+++ ++++..+..
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~ 358 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQGP 358 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECST
T ss_pred CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEccC
Confidence 789999999999999999887 677788899999988874 56999999999999999998 888888876
Q ss_pred --ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-----ccCCCCeeEEEEccCCC
Q 016547 262 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNASDP 334 (387)
Q Consensus 262 --~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~ 334 (387)
|...|.+++|++ + ++++++.||.|++||+.++.. +..+ .+|.+.|++++|+|++.
T Consensus 359 ~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 359 NKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF---------------IRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp TSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE---------------EEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred CCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCCce---------------eeeeeccccCCCCceEEEEEecCCEE
Confidence 888999999964 4 577999999999999998532 2223 46888999999999887
Q ss_pred eEEEEecCCCCCCCCCce----EEEEecCC
Q 016547 335 WTVVSVSDDCDSTGGGGT----LQIWRMSD 360 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~----i~iw~~~~ 360 (387)
.++ +|+.||+ |.+||++.
T Consensus 421 ~la--------~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 421 VCA--------VGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEE--------EECSSSSSCCEEEEEECCC
T ss_pred EEE--------EcccCCCCccEEEEEECCC
Confidence 665 5555576 99999983
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-35 Score=253.77 Aligned_cols=246 Identities=12% Similarity=0.093 Sum_probs=189.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
.-...|.+++|+| +|+++||++.|++|+ |.... + .+.+|.. .|++++|+|+| .+
T Consensus 13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~------------~---~l~gh~~-~v~~V~FsPdg-------~~ 66 (588)
T 2j04_A 13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYA------------K---DINCNSK-NLFHVKEFPLE-------FE 66 (588)
T ss_dssp CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCC------------S---CCSSBGG-GTEEEEEECCC-------CC
T ss_pred HhhccEEEEEECC-CCCEEEEEcCCceee--ccccc------------c---eecCCCc-cEEEEEECCCC-------Cc
Confidence 3468899999999 999999999999999 64444 2 2368988 69999999998 45
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
+.+.+|+.+... ...+ .|...|.+++|+|+| ..++++
T Consensus 67 ~~~~~~~~~~~~-----------------------------------------~~~~-~~~~~V~~vawSPdG-~~LAs~ 103 (588)
T 2j04_A 67 NKLDFELAQQNG-----------------------------------------LLNS-QPVCYPRVCKPSPID-DWMAVL 103 (588)
T ss_dssp CTTTTSCCCSSC-----------------------------------------SSTT-SCSCCEEEEEECSSS-SCEEEE
T ss_pred ceEEEEeCCCce-----------------------------------------Eeec-CCCCcEEEEEECCCC-CEEEEE
Confidence 555555543211 0111 447889999999999 889999
Q ss_pred cCCCeEEEEEccCCCCceeEEeeccCC-----CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC-------ce
Q 016547 189 GDDSCLILWDARVGTSPVIKVEKAHDA-----DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS-------PI 256 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------~~ 256 (387)
+.||.|++||... ....+. |.. .+.+++|+| ++++|++|+.||+|++||+.. +. .+
T Consensus 104 s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~------~~l~~~~~i~l 171 (588)
T 2j04_A 104 SNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK------NSENTPEFYFE 171 (588)
T ss_dssp ETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC------CTTTCCCCEEE
T ss_pred eCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC------Cccccccceee
Confidence 9999999999543 445555 554 499999999 999999999999999999987 43 25
Q ss_pred EEe----ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-ccCCCCeeEEEEcc
Q 016547 257 NKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNA 331 (387)
Q Consensus 257 ~~~----~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 331 (387)
.++ .+|...|.+++|+|+| + ++++.|+.|++||+...... .....+ .+|...|.+++|+
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~------------~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQ------------PVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSC------------CCEEEEECCCSSCCCCEEEE-
T ss_pred eeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccc------------cceeeecccccCcEEEEEEE-
Confidence 666 6778899999999999 4 57778999999999874311 112334 4788899999999
Q ss_pred CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee--cC
Q 016547 332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS--KP 387 (387)
Q Consensus 332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f--~P 387 (387)
++.++ +++ |++|++||+. .++......+|.+.|.+++| +|
T Consensus 236 -g~~LA--------Sa~-~~tIkLWd~~------~~~~~~~~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 236 -DYKVV--------LTC-PGYVHKIDLK------NYSISSLKTGSLENFHIIPLNHEK 277 (588)
T ss_dssp -TTEEE--------EEC-SSEEEEEETT------TTEEEEEECSCCSCCCEEEETTCS
T ss_pred -CCEEE--------EEe-CCeEEEEECC------CCeEEEEEcCCCceEEEEEeeeCC
Confidence 56665 333 4899999999 45543333389999999999 76
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-33 Score=239.96 Aligned_cols=260 Identities=13% Similarity=0.054 Sum_probs=202.2
Q ss_pred eeeeeeecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEec-cCCCCcccccCCCCCCCeEEEec--cCCCceEEEEECC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCP 97 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~~v~~~~~~~ 97 (387)
.......+|.+.|++++|+| +++ +|++|+.||.|++||+ .++ ....+.+ |.. .|.+++|+|
T Consensus 47 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~-------------~~~~~~~~~~~~-~v~~l~~~~ 111 (342)
T 1yfq_A 47 VDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSP-------------SFQALTNNEANL-GICRICKYG 111 (342)
T ss_dssp EEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSS-------------SEEECBSCCCCS-CEEEEEEET
T ss_pred ccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCC-------------ceEeccccCCCC-ceEEEEeCC
Confidence 33455668999999999999 788 9999999999999999 776 2356677 877 799999999
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
+++|++++.|+.|++||+++....... ...+++..+. |...|.+++|
T Consensus 112 -~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 112 -DDKLIAASWDGLIEVIDPRNYGDGVIA-------------------------------VKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp -TTEEEEEETTSEEEEECHHHHTTBCEE-------------------------------EEESCSSSSS-SCCCEEEEEE
T ss_pred -CCEEEEEcCCCeEEEEccccccccccc-------------------------------ccCCeeeEEe-eCCceEEEEe
Confidence 999999999999999998741000000 0001112233 7789999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccC-CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
+|++ +++++.|+.|++||++. ...........|...+.+++|+|.+++++++++.||.|++||++........+..
T Consensus 159 ~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 159 NSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp CSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred cCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 9875 89999999999999998 6544445566788899999999845789999999999999999872100012677
Q ss_pred EEeccccc---------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC-CCCeeE
Q 016547 257 NKFEGHSA---------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVD 326 (387)
Q Consensus 257 ~~~~~~~~---------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 326 (387)
..+..|.. .|.+++|+|++++ |++++.||.|++||+.+. ..+..+.+| ...|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVK 299 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceE
Confidence 78887765 9999999999996 579999999999999875 346667888 999999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCCce-EEEEec
Q 016547 327 FHWNASDPWTVVSVSDDCDSTGGGGT-LQIWRM 358 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~d~~tg~~dg~-i~iw~~ 358 (387)
++ |++.+++ +|+.||. .+.|..
T Consensus 300 ~~--~~~~~l~--------s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 300 IA--CSDNILC--------LATSDDTFKTNAAI 322 (342)
T ss_dssp EE--ECSSEEE--------EEEECTHHHHCSSS
T ss_pred ec--CCCCeEE--------EEecCCcccccccc
Confidence 99 9888776 5555687 554443
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.1e-35 Score=254.99 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=169.9
Q ss_pred CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--------CCCEEEEecCCCeEEE
Q 016547 42 QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--------TEPYVLSGGKDKSVVL 113 (387)
Q Consensus 42 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--------~~~~l~s~~~d~~i~v 113 (387)
.++.+||+|+.|++|+|||+++++.... .....+.+|.+ .|++++|+| ++++|++|+.|++|++
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~-------~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQ-------HVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEE-------EEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcccee-------eeecccCCCCC-ceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 3667899999999999999988732110 12234678998 799999998 7899999999999999
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 193 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 193 (387)
||+.+.. +...+..|...|.+++|+|++..+|++++.|+.
T Consensus 171 Wd~~~~~----------------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 171 WRLTDEG----------------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp EEEETTE----------------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred EECCCCc----------------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence 9997532 224566788999999999998678999999999
Q ss_pred EEEEEccCCCCcee-----------------------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 194 LILWDARVGTSPVI-----------------------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 194 i~iwd~~~~~~~~~-----------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
|++||+++++.... ....+|...+.++.|.+.++..+++++.|+.+++||+..
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~---- 286 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA---- 286 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc----
Confidence 99999987652110 112457788999998744999999999999999999987
Q ss_pred CCCCceEEeccccceEEEEEEc-------------------CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547 251 GVGSPINKFEGHSAAVLCVQWS-------------------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~-------------------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 311 (387)
++....+..|...+..+.+. +.+..++++|+.||.|++||+....
T Consensus 287 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-------------- 350 (393)
T 4gq1_A 287 --NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-------------- 350 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT--------------
T ss_pred --CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc--------------
Confidence 44444444444444333332 3345567889999999999998752
Q ss_pred eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
......+|..+|.+++|+|+|++|+ +++. +.+.+|.+.
T Consensus 351 -~~~~~~~~~~~V~svafspdG~~LA--------~as~-~Gv~lvrL~ 388 (393)
T 4gq1_A 351 -SNSIPIQLGMPIVDFCWHQDGSHLA--------IATE-GSVLLTRLM 388 (393)
T ss_dssp -CCEEEEECSSCEEEEEECTTSSEEE--------EEES-SEEEEEEEG
T ss_pred -EEEEecCCCCcEEEEEEcCCCCEEE--------EEeC-CCeEEEEEe
Confidence 2344567888999999999999876 3333 356777665
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-33 Score=244.01 Aligned_cols=256 Identities=13% Similarity=0.094 Sum_probs=201.1
Q ss_pred cCCCcEEEEEecCCCCcEE-EEecCCCcEEEEecc--CCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCCCEEE
Q 016547 29 IHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~~~l~ 103 (387)
+|.+.|++++|+| ++++| ++|+.||.|++||+. ++ .....+. .|.. .|.+++|+|++++|+
T Consensus 100 ~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~~~~-~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 100 PIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK------------NVLKLRKRFCFSK-RPNAISIAEDDTTVI 165 (450)
T ss_dssp CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS------------SCEEEEEEEECSS-CEEEEEECTTSSEEE
T ss_pred ccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC------------ceeeeeecccCCC-CceEEEEcCCCCEEE
Confidence 5778999999999 67775 999999999999998 66 5566665 4455 689999999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC---
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--- 180 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 180 (387)
+++.||.|++|++.+..... .....+.+|...|.+++|+|+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~ 209 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEK------------------------------------FTQEPILGHVSMLTDVHLIKDSDG 209 (450)
T ss_dssp EEETTSEEEEEETTSCCCSS------------------------------------CCCCCSEECSSCEEEEEEEECTTS
T ss_pred EEeCCCcEEEEecCCccccc------------------------------------ccceeeecccCceEEEEEcCCCCC
Confidence 99999999999997643211 022356788999999999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+ .+|++++.|+.|++||+++++ .... ..+|...|.+++|+ ++.+|++++.|+.|++||+++ ++++..+
T Consensus 210 ~-~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~~ 278 (450)
T 2vdu_B 210 H-QFIITSDRDEHIKISHYPQCF--IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLSTF 278 (450)
T ss_dssp C-EEEEEEETTSCEEEEEESCTT--CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEEE
T ss_pred C-cEEEEEcCCCcEEEEECCCCc--eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeeee
Confidence 7 899999999999999998877 3444 56899999999999 789999999999999999998 7777777
Q ss_pred ccc-------------------------cceEEEEEEcCCCCeeEEEecCCCeEEEEeC--CCCCceeccCCCCCCCCce
Q 016547 260 EGH-------------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY--EKVGKKVEQGPRTTNYPAG 312 (387)
Q Consensus 260 ~~~-------------------------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~ 312 (387)
..+ ...|.+++|+|+++++++++..|+.|++|++ ..... ..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------------l~ 346 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD------------LA 346 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC------------EE
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc------------ee
Confidence 532 3568999999999976644448999999999 33211 13
Q ss_pred eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 313 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.+..+..| ..|.+++|+|+ ..+++..+.+. .++.++.|.+|.+..
T Consensus 347 ~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~-~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 347 LKQIITFP-YNVISLSAHND-EFQVTLDNKES-SGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEECS-SCEEEEEEETT-EEEEEECCTTC-CSSCCCSEEEEEEET
T ss_pred eccEeccC-CceEEEEecCC-cEEEEEecccC-CCCCCcceEEEEEEc
Confidence 45556667 88999999994 44443333321 344578899998763
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=249.05 Aligned_cols=283 Identities=16% Similarity=0.247 Sum_probs=198.1
Q ss_pred eeeeecCC------------CcEEEEEecCCCC--cEEEEecCCCcEEEEeccCCCCcccccCCCC--------------
Q 016547 24 KHKTIIHP------------GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHAVLGATN-------------- 75 (387)
Q Consensus 24 ~~~~~~h~------------~~v~~i~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-------------- 75 (387)
.....+|. +.|++++|+| ++ .+|++++.||+|++||+.+............
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 152 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred ecccccccccccccccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence 34556788 8899999999 55 7899999999999999987432110000000
Q ss_pred -------------CCCeEE-EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc-cCCCcccCCCCCCcee
Q 016547 76 -------------SRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSII 140 (387)
Q Consensus 76 -------------~~~~~~-~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 140 (387)
..+... ..+|.. .|.+++|+|++++|++| .|+.|++||++....... ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~------------- 217 (447)
T 3dw8_B 153 RVPVFRPMDLMVEASPRRIFANAHTY-HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI------------- 217 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEEECSCCSS-CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC-------------
T ss_pred EeccccchheeeeccceEEeccCCCc-ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec-------------
Confidence 001112 357877 79999999999999999 799999999984221100 000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCC---
Q 016547 141 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDA--- 215 (387)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~--- 215 (387)
....+.+|...|.+++|+|++..+|++++.||.|++||+++++.. ....+..|..
T Consensus 218 --------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 218 --------------------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp --------------------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred --------------------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 001356889999999999997678999999999999999987721 1455666665
Q ss_pred ---------CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce---------------EEEEEE
Q 016547 216 ---------DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA---------------VLCVQW 271 (387)
Q Consensus 216 ---------~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~ 271 (387)
.|.+++|+| ++++|++++. +.|++||++.. ++++..+..|... +..++|
T Consensus 278 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 350 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW 350 (447)
T ss_dssp CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE
T ss_pred cccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccccccccccccceEEEE
Confidence 899999999 9999999999 99999999853 5677777777542 334999
Q ss_pred cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC-----C------------ceeeeeeccCCCCeeEEEEccCCC
Q 016547 272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY-----P------------AGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
+|++++ |++++.||.|++||+................ . .........+...|..++|+|+++
T Consensus 351 s~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 429 (447)
T 3dw8_B 351 NGSDSV-VMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN 429 (447)
T ss_dssp CTTSSE-EEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS
T ss_pred CCCCCE-EEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC
Confidence 999996 5799999999999999854332111110000 0 000111123456899999999999
Q ss_pred eEEEEecCCCCCCCCCceEEEEecC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.++++ +. +.+++|.-+
T Consensus 430 ~la~~--------~~-~~~~~~~~~ 445 (447)
T 3dw8_B 430 IIAVA--------TT-NNLYIFQDK 445 (447)
T ss_dssp EEEEE--------CS-SCEEEEECC
T ss_pred EEEEE--------ec-ceeeeeccc
Confidence 87643 22 358888754
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-33 Score=241.28 Aligned_cols=243 Identities=14% Similarity=0.253 Sum_probs=192.9
Q ss_pred eEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547 79 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 158 (387)
Q Consensus 79 ~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (387)
...+.+|.+ .|++++|+|++++|++|+.||.|++||+.+... .
T Consensus 4 ~~~~~gH~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~ 46 (351)
T 3f3f_A 4 QPFDSGHDD-LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------N 46 (351)
T ss_dssp CCEECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------C
T ss_pred cccCccccc-ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------c
Confidence 345788987 799999999999999999999999999975321 1
Q ss_pred CCCceeecCCCCCeEEEEEcc--CCCeeEEEecCCCeEEEEEccCCCC-------ceeEEeeccCCCeeEEEecCCC--C
Q 016547 159 VGPRGIYNGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDARVGTS-------PVIKVEKAHDADLHCVDWNPLD--D 227 (387)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~--~ 227 (387)
......+.+|...|.+++|+| ++ .+|++++.||.|++||++.++. .....+..|...|.+++|+| + +
T Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 124 (351)
T 3f3f_A 47 WELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLG 124 (351)
T ss_dssp EEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGC
T ss_pred ceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCC
Confidence 123356778999999999999 46 7899999999999999988642 24566778999999999999 8 9
Q ss_pred CeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-------------ccccceEEEEEEcCC---CCeeEEEecCCCeEEEE
Q 016547 228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKF-------------EGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIW 291 (387)
Q Consensus 228 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~---~~~ll~s~~~d~~i~vw 291 (387)
.+|++++.||.|++||+++ .+.+..+ ..|...+.+++|+|+ +. ++++++.|+.+.+|
T Consensus 125 ~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~ 197 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALE------PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQ 197 (351)
T ss_dssp SEEEEEETTCEEEEEECSS------TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEE
T ss_pred cEEEEecCCCcEEEecCCC------hHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEE
Confidence 9999999999999999987 3333222 157788999999997 66 56789999999877
Q ss_pred eCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC---eEEEEecCCCCCCCCCceEEEEecCCCcc-----
Q 016547 292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLIY----- 363 (387)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~s~s~d~~tg~~dg~i~iw~~~~~~~----- 363 (387)
+...... .....+.+|...|++++|+|++. .+++ +|+.||.|++||+.....
T Consensus 198 ~~~~~~~-------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-------s~~~dg~i~iwd~~~~~~~~~~~ 257 (351)
T 3f3f_A 198 RGKDGKL-------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIA-------TGCKDGRIRIFKITEKLSPLASE 257 (351)
T ss_dssp ECTTSCE-------------EEEEECCCCCSCEEEEEECCCSSCSSEEEE-------EEETTSCEEEEEEEECC------
T ss_pred ccCCCce-------------eeeeecCCCCcceeEEEECCCCCCcceEEE-------EEcCCCeEEEEeCCCCcCccccC
Confidence 7765321 34667788999999999999983 3444 555669999999984210
Q ss_pred -----------------------------------cccchhhhhhhccCceEEEeeecC
Q 016547 364 -----------------------------------RPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 364 -----------------------------------~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
....+++..+.+|.+.|++++|+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 258 ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp ---------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 001256777889999999999987
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=245.97 Aligned_cols=254 Identities=9% Similarity=0.078 Sum_probs=191.3
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCCEEEEec
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
.+|.+.|++++|+| ++ .++.+.+|+.+.. ..+. .|. ..|.+++|+|+|++||+++
T Consensus 49 ~gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~---------------~~~~~~~~-~~V~~vawSPdG~~LAs~s 104 (588)
T 2j04_A 49 NCNSKNLFHVKEFP-LE-------FENKLDFELAQQN---------------GLLNSQPV-CYPRVCKPSPIDDWMAVLS 104 (588)
T ss_dssp SSBGGGTEEEEEEC-CC-------CCCTTTTSCCCSS---------------CSSTTSCS-CCEEEEEECSSSSCEEEEE
T ss_pred cCCCccEEEEEECC-CC-------CcceEEEEeCCCc---------------eEeecCCC-CcEEEEEECCCCCEEEEEe
Confidence 48999999999999 65 4555555554432 1112 343 4799999999999999999
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-----CeEEEEEccCC
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-----TVEDVTFCPSS 181 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 181 (387)
.||.|++||.+. .+..+. |.. .|.+++|+|+|
T Consensus 105 ~dg~V~iwd~~~------------------------------------------~l~~l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 105 NNGNVSVFKDNK------------------------------------------MLTNLD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp TTSCEEEEETTE------------------------------------------EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred CCCcEEEEeCCc------------------------------------------eeeecc-CCCccccccEEEEEEcCCC
Confidence 999999999642 112333 443 59999999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCC--c---eeEEe----eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547 182 AQEFCSVGDDSCLILWDARVGTS--P---VIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~--~---~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 252 (387)
++|++|+.||+|++||+..+.. + .+..+ .+|...|.+++|+| ++ +++++.|+.|++||+..
T Consensus 142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~------ 211 (588)
T 2j04_A 142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSA------ 211 (588)
T ss_dssp -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCS------
T ss_pred -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCC------
Confidence 8999999999999999988752 1 23444 56778999999999 87 88899999999999987
Q ss_pred CC---ceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547 253 GS---PINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 328 (387)
Q Consensus 253 ~~---~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (387)
.. ...++ .+|...|.+++|+ +. .+|+++ ++.|++||+... .......+|...|.+++
T Consensus 212 ~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~---------------~~~~~~~gh~~~V~~va 272 (588)
T 2j04_A 212 SSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY---------------SISSLKTGSLENFHIIP 272 (588)
T ss_dssp SSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT---------------EEEEEECSCCSCCCEEE
T ss_pred CccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC---------------eEEEEEcCCCceEEEEE
Confidence 44 33556 4788999999999 55 466777 699999999874 22122338999999999
Q ss_pred E--ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchh-----------------hhhhhccCceEEEeeecC
Q 016547 329 W--NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV-----------------LAELEKFKAHVISCTSKP 387 (387)
Q Consensus 329 ~--~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~f~P 387 (387)
| +|++..++ +++.||+ ++|..+.....+.+.. +..+.+ ...|++++|||
T Consensus 273 ~~~s~d~~~La--------~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP 340 (588)
T 2j04_A 273 LNHEKESTILL--------MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP 340 (588)
T ss_dssp ETTCSSCEEEE--------ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT
T ss_pred eeeCCCCCEEE--------EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC
Confidence 9 99997776 6777799 9999864443333332 222222 45699999998
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.4e-32 Score=238.96 Aligned_cols=282 Identities=9% Similarity=0.055 Sum_probs=219.6
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 102 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l 102 (387)
+....+.+...+.+++|+| ++.++++++.|+.|++||+.+++..... ....+.+|.. .|.+++|+++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~~~~~~~~-~v~~~~~~~~~~~~ 184 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLS-------PPEKYKKKLG-FVETISIPEHNELW 184 (433)
T ss_dssp EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEEC-------CCHHHHTTCC-EEEEEEEGGGTEEE
T ss_pred eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeec-------CcccccccCC-ceeEEEEcCCCEEE
Confidence 3344455566678999999 8999999999999999999987321100 0003456766 79999999999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.|+.|++||++++. ....+..|...+.+++|+|++.
T Consensus 185 ~s~~~d~~v~~~d~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLA----------------------------------------YKATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp EEEGGGTEEEEEETTTCC----------------------------------------EEEEEECSSSSEEEEEEETTTT
T ss_pred EEECCCCEEEEEECCCce----------------------------------------EEEEEcCCCCCeeEEEEcCCCC
Confidence 999999999999997532 2345567888999999999995
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee--------CCCeEEEEEeccCCCCCCCC
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--------ADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------~dg~i~~~d~~~~~~~~~~~ 254 (387)
.++++++.++.|++||+++++ ....+. +...+.+++|+| +++++++++ .||.|++||+++ ++
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~ 294 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKL--EIRKTD-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EK 294 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEECC-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TE
T ss_pred EEEEEecCCCcEEEEECCCCc--EEEEec-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------Cc
Confidence 555777789999999998876 444444 345699999999 898998888 588999999997 66
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
.+..+ .|...+.+++|+|++++++++++.|+.|++||+... .....+ .+...+.+++|+|+++
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---------------~~~~~~-~~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---------------KVQKSI-PVFDKPNTIALSPDGK 357 (433)
T ss_dssp EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---------------EEEEEE-ECSSSEEEEEECTTSS
T ss_pred EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---------------cEEEEe-cCCCCCCeEEEcCCCC
Confidence 65555 466788999999999988888899999999999864 223333 3667899999999999
Q ss_pred eEEEEecCC-------CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 335 WTVVSVSDD-------CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 335 ~l~~s~s~d-------~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
++++++..+ .++|+.||.|++||+. +++.+..+.. ...+.+++|+|
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~ 410 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT------TDTVKEFWEA-GNQPTGLDVSP 410 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT------TTEEEEEEEC-SSSEEEEEECT
T ss_pred EEEEEecCCCccccccccccccceEEEEEECC------CCcEEEEecC-CCCCceEEEcC
Confidence 888766542 1246668999999998 6777777765 45789999987
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.2e-33 Score=238.20 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=196.5
Q ss_pred eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEe
Q 016547 27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSG 105 (387)
Q Consensus 27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~ 105 (387)
...|.+.|++++|+| ++++||+|+.+| ++|||+++. ........ . .+..+++.++++.+ +++
T Consensus 15 ~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV------------AHIMSQEM-R--HLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE------------EEEEEEEC-S--CCCEEEECTTSSEEEEEC
T ss_pred cccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc------------ceeeeeec-C--CeEEEEEcCCCCEEEEEE
Confidence 357999999999999 889999998775 789998766 22222222 2 26788999988877 567
Q ss_pred cCCCeEEEEEcCCCcCccccCCCccc---CCCCCCceeccCCCCCCCCCCCCCCCCC-CCceeecCCCCCeEEEEEccCC
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+.|++|++||+.++............ ...... ... . .+..+.+|+.... +.+..+.. +...+++++ .
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~-~~~-~---~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~ 148 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF-IVV-S---YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-G 148 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE-EEE-E---ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-T
T ss_pred CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE-EEE-E---EcCEEEEEECCCCceeeEEecc---CCceEEEEc-c
Confidence 88899999999887554332211100 000010 111 0 1334556665555 44444443 444556666 3
Q ss_pred CeeEEE-ecCCCeEEEEEccCCCC--------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEEec
Q 016547 182 AQEFCS-VGDDSCLILWDARVGTS--------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRR 245 (387)
Q Consensus 182 ~~~l~~-~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d~~ 245 (387)
.++++ |+.||.|++||++++.. +....+.+|...|++++|+| ++++|++|+.||+ |++||++
T Consensus 149 -~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 149 -LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp -EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETT
T ss_pred -EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence 44444 78999999999987541 11567789999999999999 9999999999998 9999999
Q ss_pred cCCCCCCCCceEEec-c-ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC--------CCCCCceeee
Q 016547 246 NLTSNGVGSPINKFE-G-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR--------TTNYPAGLFF 315 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~~~~~ 315 (387)
+ ++++..+. + |...|.+++|+|++++ |++++.|+.|++||++........... ...+......
T Consensus 227 ~------~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 227 D------GVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp T------CCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred C------CcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 8 88999998 5 9999999999999996 679999999999999864321110000 0000001111
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....+......++|++++++++ +++.||.+++|++.
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~--------~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVV--------VWPHTRMIETFKVV 335 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEE--------EETTTTEEEEEEEE
T ss_pred eccCCCCCceEEEEeCCCCEEE--------EEeCCCeEEEEEEE
Confidence 1112233457799999999888 66678999999998
No 114
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.5e-33 Score=238.21 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=166.0
Q ss_pred CCCcEEEEEecCCCCcEEE--EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 30 HPGEVNRIRELPQNTKIVA--THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~--t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
+...+.+++|+| +++++| +++.|++|+|||++++ +++..+. |.. .|.+++|+|+|++|++++.
T Consensus 132 ~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~------------~~~~~~~-~~~-~V~~v~fspdg~~l~s~s~ 196 (365)
T 4h5i_A 132 ADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDL------------TEKFEIE-TRG-EVKDLHFSTDGKVVAYITG 196 (365)
T ss_dssp TTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTT------------EEEEEEE-CSS-CCCEEEECTTSSEEEEECS
T ss_pred cccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCC------------cEEEEeC-CCC-ceEEEEEccCCceEEeccc
Confidence 445689999999 788765 4557999999999988 5666665 544 5899999999999999985
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
+ .+++|+..++.... ......|...|.+++|+|++ ..+++
T Consensus 197 ~-~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~v~~v~fspdg-~~l~~ 236 (365)
T 4h5i_A 197 S-SLEVISTVTGSCIA--------------------------------------RKTDFDKNWSLSKINFIADD-TVLIA 236 (365)
T ss_dssp S-CEEEEETTTCCEEE--------------------------------------EECCCCTTEEEEEEEEEETT-EEEEE
T ss_pred e-eEEEEEeccCccee--------------------------------------eeecCCCCCCEEEEEEcCCC-CEEEE
Confidence 5 56666665432211 12345688899999999999 88888
Q ss_pred ecCCC----eEEEEEccCCCCce--eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-c
Q 016547 188 VGDDS----CLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-E 260 (387)
Q Consensus 188 ~~~dg----~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~ 260 (387)
++.|+ .+++||+....... ...+..|...|++++|+| ++++||+|+.|+.|+|||+++ ++++..+ +
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~------~~~~~~~~~ 309 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKD------LSMSKIFKQ 309 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEETT
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCC------CcEEEEecC
Confidence 88776 68889987765322 345678899999999999 999999999999999999998 8888875 7
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+|...|++++|+|||++ ||+++.|++|+|||+...
T Consensus 310 gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTY-VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSSCEEEEEECTTSCE-EEEEETTSEEEEEECCTT
T ss_pred cccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC
Confidence 89999999999999995 689999999999999753
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=6.3e-33 Score=240.51 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=163.6
Q ss_pred EEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547 93 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 172 (387)
Q Consensus 93 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 172 (387)
..+.+++.+|++++.|++|++||++++.... ...+..+.+|.+.|
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------------------~~~~~~~~gH~~~v 139 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------------------QHVLGGKSGHHNFV 139 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------------------EEEECTTTSCSSCE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------------------eeeecccCCCCCce
Confidence 3344566789999999999999998653211 11224567999999
Q ss_pred EEEEEcc--------CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547 173 EDVTFCP--------SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 173 ~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~ 244 (387)
++++|+| ++ ++|++++.|++|++||++++. .......|...+.+++|+|.+..+|++++.||.|++||+
T Consensus 140 ~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp EEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred EEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence 9999998 66 899999999999999998776 456667889999999999933468999999999999999
Q ss_pred ccCCCCCCC-------------------CceEEeccccceEEEEEEc-CCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547 245 RNLTSNGVG-------------------SPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 245 ~~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~-~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 304 (387)
++....... .......+|...+.++.|+ |+++. +++++.|+.+++||+...........
T Consensus 217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~s~d~~i~vwd~~~~~~~~~l~~ 295 (393)
T 4gq1_A 217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAMCKSGAWLRWNLFANNDYNEISD 295 (393)
T ss_dssp TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE-EEEECTTSEEEEEEC-----------
T ss_pred CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCE-EEEEeCCCCEEEEECccCCCCceEee
Confidence 873211000 0011123577788899987 78885 57999999999999987433221111
Q ss_pred CCCC----CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceE
Q 016547 305 RTTN----YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 380 (387)
Q Consensus 305 ~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v 380 (387)
.... ...........+...+..+.+.+.+..+++ +|+.||+|++||+. +++++..+.+|..+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------sgs~Dg~V~lwd~~------~~~~~~~~~~~~~~V 362 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT-------AHSQHGLIQLINTY------EKDSNSIPIQLGMPI 362 (393)
T ss_dssp --------CCSCSEEEECSSCCSSCCEECSSCTTEEEE-------EETTTTEEEEEETT------CTTCCEEEEECSSCE
T ss_pred ecCccccEEEccccccccccCcceeEEEccCCCCEEEE-------EECCCCEEEEEECC------CCcEEEEecCCCCcE
Confidence 0000 000011122223333333334444555665 45566999999999 788888888999999
Q ss_pred EEeeecC
Q 016547 381 ISCTSKP 387 (387)
Q Consensus 381 ~~~~f~P 387 (387)
++++|||
T Consensus 363 ~svafsp 369 (393)
T 4gq1_A 363 VDFCWHQ 369 (393)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 9999998
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=260.50 Aligned_cols=242 Identities=21% Similarity=0.345 Sum_probs=193.4
Q ss_pred EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 159 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (387)
..+.+|.+ .|++++|+|++++|++|+.||.|++||+.+. ..
T Consensus 3 ~~l~gH~~-~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------------------~~ 43 (753)
T 3jro_A 3 VIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------TH 43 (753)
T ss_dssp -----CCC-CEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------------------EE
T ss_pred eecccCcc-eeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------------------CC
Confidence 45788988 7999999999999999999999999998732 12
Q ss_pred CCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeC
Q 016547 160 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA 235 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~ 235 (387)
.....+.+|...|++++|+|+ + .++++|+.||.|++||+++++.........|...|++++|+| + +.++++|+.
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~ 121 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASS 121 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred ccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeC
Confidence 234667889999999999987 6 899999999999999999876445667778999999999999 7 999999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC-------------CCeeEEEecCCCeEEEEeCCCCCceecc
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQ 302 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~ll~s~~~d~~i~vwd~~~~~~~~~~ 302 (387)
||.|++||++... ......+.+|...|.+++|+|. +. ++++|+.||.|++||++.....
T Consensus 122 dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~--- 193 (753)
T 3jro_A 122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT--- 193 (753)
T ss_dssp TSEEEEEECCSSS----CCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTE---
T ss_pred CCcEEEEEeecCC----CcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCccc---
Confidence 9999999999732 2455567789999999999994 66 4679999999999999875322
Q ss_pred CCCCCCCCceeeeeeccCCCCeeEEEEccC---CCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCce
Q 016547 303 GPRTTNYPAGLFFQHAGHRDKVVDFHWNAS---DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 379 (387)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 379 (387)
......+.+|...|++++|+|+ +.+++ +|+.||.|++||+...... ....+.....|...
T Consensus 194 --------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~--------s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~ 256 (753)
T 3jro_A 194 --------YVLESTLEGHSDWVRDVAWSPTVLLRSYLA--------SVSQDRTCIIWTQDNEQGP-WKKTLLKEEKFPDV 256 (753)
T ss_dssp --------EEEEEEECCCSSCEEEEEECCCCSSSEEEE--------EEESSSCEEEEEESSSSSC-CBCCBSSSSCCSSC
T ss_pred --------ceeeeeecCCCCcEEEEEeccCCCCCCEEE--------EEecCCEEEEecCCCCCCc-ceeEEeccCCCCCc
Confidence 1345677899999999999999 56555 5666699999999842100 01134455678899
Q ss_pred EEEeeecC
Q 016547 380 VISCTSKP 387 (387)
Q Consensus 380 v~~~~f~P 387 (387)
|++++|+|
T Consensus 257 v~~l~~sp 264 (753)
T 3jro_A 257 LWRASWSL 264 (753)
T ss_dssp CCCEEECT
T ss_pred eEEEEEcC
Confidence 99999987
No 117
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=236.33 Aligned_cols=256 Identities=17% Similarity=0.244 Sum_probs=193.5
Q ss_pred eeeeecCCCcEEEEEecCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE------E
Q 016547 24 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA------M 95 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~------~ 95 (387)
.....+|.+.|.+++|+|.. +++|++|+.||.|++||+.+.+ .+...+.+|.. .|.++. |
T Consensus 58 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~-~v~~~~~~~~~~~ 125 (357)
T 3i2n_A 58 LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKE-IINAIDGIGGLGI 125 (357)
T ss_dssp EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSS-CEEEEEEESGGGC
T ss_pred ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEeccc-ceEEEeecccccc
Confidence 34456899999999999943 7999999999999999999882 26788889988 689995 5
Q ss_pred CCCCCEEEEecCCCeEEEEEcCCCc-CccccCCCcccC------------CCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547 96 CPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKS------------AGSSGSIIKQSPKPGDGNDKAADGPSVGPR 162 (387)
Q Consensus 96 ~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (387)
+|++++|++++.||.|++||+.++. ............ .......+ .....++.+.+|+....+.
T Consensus 126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l--~~~~~d~~i~i~d~~~~~~- 202 (357)
T 3i2n_A 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV--CAGYDNGDIKLFDLRNMAL- 202 (357)
T ss_dssp C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE--EEEETTSEEEEEETTTTEE-
T ss_pred CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE--EEEccCCeEEEEECccCce-
Confidence 7899999999999999999998765 222222111100 01111111 1122345677777776665
Q ss_pred eeecCCCCCeEEEEEcc---CCCeeEEEecCCCeEEEEEccCCCCcee---EEeeccCCCeeEEEecCCCCC-eEEEeeC
Q 016547 163 GIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCVDWNPLDDN-LILTGSA 235 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~-~l~~~~~ 235 (387)
.....|...|.+++|+| ++ ..+++++.||.|++||+++++.... .....|...|++++|+| ++. +|++++.
T Consensus 203 ~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~ 280 (357)
T 3i2n_A 203 RWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGG 280 (357)
T ss_dssp EEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEET
T ss_pred eeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeC
Confidence 33467889999999999 77 7899999999999999987653211 12348999999999999 777 8999999
Q ss_pred CCeEEEEEeccCCCCC-------------CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 236 DNSVRMFDRRNLTSNG-------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
||.|++||++...... ..+.+..+..|...|.+++|+|++++++++++.||.|++||+.+.
T Consensus 281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999999998643210 014677888999999999999999976558999999999999874
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.2e-30 Score=224.95 Aligned_cols=258 Identities=12% Similarity=0.109 Sum_probs=198.6
Q ss_pred eeecCCCcEEEEEecCCCCcE-EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-
Q 016547 26 KTIIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL- 103 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~- 103 (387)
..+.+...+.+++|+| ++++ +++++.|++|++||+.++ +....+..+. .+.+++|+|++++|+
T Consensus 26 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~------------~~~~~~~~~~--~v~~~~~spdg~~l~~ 90 (391)
T 1l0q_A 26 ATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGS--SPQGVAVSPDGKQVYV 90 (391)
T ss_dssp EEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSS--SEEEEEECTTSSEEEE
T ss_pred EEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCC------------eEEEEEECCC--CccceEECCCCCEEEE
Confidence 3344556699999999 6655 578889999999999888 5666666665 589999999999875
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+++.++.|++||+.++.. +..+.. ...+.+++|+|++..
T Consensus 91 ~~~~~~~v~v~d~~~~~~----------------------------------------~~~~~~-~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 91 TNMASSTLSVIDTTSNTV----------------------------------------AGTVKT-GKSPLGLALSPDGKK 129 (391)
T ss_dssp EETTTTEEEEEETTTTEE----------------------------------------EEEEEC-SSSEEEEEECTTSSE
T ss_pred EECCCCEEEEEECCCCeE----------------------------------------EEEEeC-CCCcceEEECCCCCE
Confidence 555779999999986432 122333 346899999999955
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
++++++.++.|++||+++++ ....+.. ...+.+++|+| +++++ ++++.++.|++||+++ ++.+..+. +
T Consensus 130 l~~~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~-~ 198 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKA--VINTVSV-GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVK-V 198 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--EEEEEEC-CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEE-C
T ss_pred EEEEeCCCCEEEEEECCCCc--EEEEEec-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CeEEEEEe-c
Confidence 55889999999999998876 4445444 45679999999 88776 6778899999999998 66666665 5
Q ss_pred cceEEEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 263 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
...+.+++|+|+++++++++. .++.|++||+... ..+..+..|. .+.+++|+|+++++++++
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIPVGP-DPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---------------eEEEEEecCC-CccEEEEccCCCEEEEEc
Confidence 668899999999998765554 6899999999874 2334444443 578999999999997755
Q ss_pred cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCce
Q 016547 341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH 379 (387)
Q Consensus 341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 379 (387)
+ .|+.|++||+. +++++..+..|..+
T Consensus 263 ~-------~d~~v~v~d~~------~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 263 S-------FXNTVSVIDTA------TNTITATMAVGKNP 288 (391)
T ss_dssp T-------TTTEEEEEETT------TTEEEEEEECSSSE
T ss_pred C-------CCCEEEEEECC------CCcEEEEEECCcCC
Confidence 4 45999999999 67777777666554
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=230.71 Aligned_cols=236 Identities=14% Similarity=0.201 Sum_probs=187.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEE--CCCCCEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM--CPTEPYV 102 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~--~~~~~~l 102 (387)
....+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.. .+.+|.. .|.+++| ++++++|
T Consensus 80 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~------------~~~-~~~~~~~-~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSN------------QAI-QIAQHDA-PVKTIHWIKAPNYSCV 144 (368)
T ss_dssp EEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEE-EEEECSS-CEEEEEEEECSSCEEE
T ss_pred EEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCC------------Cce-eeccccC-ceEEEEEEeCCCCCEE
Confidence 45567999999999999 8899999999999999999987 333 3566776 7999999 9999999
Q ss_pred EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
++++.||.|++||++++.. +..+..+ ..+.++.+.++
T Consensus 145 ~~~~~dg~i~vwd~~~~~~----------------------------------------~~~~~~~-~~~~~~~~~~~-- 181 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNP----------------------------------------MMVLQLP-ERCYCADVIYP-- 181 (368)
T ss_dssp EEEETTSEEEEECSSCSSC----------------------------------------SEEEECS-SCEEEEEEETT--
T ss_pred EEccCCCcEEEEECCCCcE----------------------------------------EEEEecC-CCceEEEecCC--
Confidence 9999999999999976432 2344444 35667777643
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCe----EEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL----ILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
.+++++.++.+.+||++............+...+.++++.+ .... +++++.||.|++||++.... ...+..
T Consensus 182 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~~~~~ 256 (368)
T 3mmy_A 182 -MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP---AKDNFT 256 (368)
T ss_dssp -EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH---HHHSEE
T ss_pred -eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc---ccccee
Confidence 57788889999999998876433333334555667777766 5544 99999999999999997310 156777
Q ss_pred eccccc------------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 259 FEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 259 ~~~~~~------------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
+..|.. .|.+++|+|++++ |++++.||.|++||++.. ..+..+.+|...|++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDAR---------------TKLKTSEQLDQPISA 320 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSCEEE
T ss_pred eeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCC---------------cEEEEecCCCCCceE
Confidence 777776 7999999999985 679999999999999875 456677889999999
Q ss_pred EEEccCCCeEEEE
Q 016547 327 FHWNASDPWTVVS 339 (387)
Q Consensus 327 ~~~~~~~~~l~~s 339 (387)
++|+|++.+|+++
T Consensus 321 ~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 321 CCFNHNGNIFAYA 333 (368)
T ss_dssp EEECTTSSCEEEE
T ss_pred EEECCCCCeEEEE
Confidence 9999999988743
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.2e-30 Score=223.98 Aligned_cols=250 Identities=13% Similarity=0.141 Sum_probs=197.4
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~ 122 (387)
+.++++++.|+.|++||+.++ +....+..|.. +.+++|+|+++++ ++++.|+.|++||+.+++.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~------------~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred CEEEEEcCCCCEEEEEECCCC------------eEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence 357889999999999999988 66777777764 7899999999987 6777899999999976432
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 202 (387)
+..+..+. .+.+++|+|++..++++++.++.|++||+.++
T Consensus 67 ---------------------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~ 106 (391)
T 1l0q_A 67 ---------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106 (391)
T ss_dssp ---------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ---------------------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence 23333333 89999999999555677778899999999987
Q ss_pred CCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547 203 TSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s 281 (387)
+ ....+. +...+.+++|+| +++.+ ++++.|+.|++||+++ ++.+..+..+ ..+.+++|+|++++++++
T Consensus 107 ~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 107 T--VAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp E--EEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred e--EEEEEe-CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEE
Confidence 7 444444 456789999999 88866 6888899999999998 7777777755 456999999999988788
Q ss_pred ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
++.++.|++||++... ....+ .+...+.+++|+|++++++++..+ ..|+.|++||+.
T Consensus 176 ~~~~~~v~~~d~~~~~---------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-----~~~~~v~~~d~~-- 232 (391)
T 1l0q_A 176 NFDSMSISVIDTVTNS---------------VIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-----KYFNTVSMIDTG-- 232 (391)
T ss_dssp ETTTTEEEEEETTTTE---------------EEEEE-ECSSEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEETT--
T ss_pred eCCCCEEEEEECCCCe---------------EEEEE-ecCCCccceEECCCCCEEEEEecC-----cCCCcEEEEECC--
Confidence 8999999999998742 22222 355688999999999988865431 145999999999
Q ss_pred cccccchhhhhhhccCceEEEeeecC
Q 016547 362 IYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++++..+..|. .+.+++|+|
T Consensus 233 ----~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 233 ----TNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp ----TTEEEEEEECCS-SEEEEEECT
T ss_pred ----CCeEEEEEecCC-CccEEEEcc
Confidence 677777777654 468888886
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.6e-30 Score=211.19 Aligned_cols=253 Identities=14% Similarity=0.173 Sum_probs=169.2
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEE-EEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVL-IWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
.+.+...+|..+|..+.+.|+..+++..+-..=.+. ++-+--.+... .......-.+|.. .|..+ ++++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~------~~~~~l~s~g~~~-~v~~l---~~g~ 146 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDE------SEKQVLLKSGNIK-AVLGL---TKRR 146 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------------CCEEEEEEEEEE-EEEEE---TTTE
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcc------ccccEEEeCCCeE-EEEec---CCCc
Confidence 455667789999999999996666665553322221 22221111000 0011112233332 23333 4555
Q ss_pred EEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 101 YVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 101 ~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
.+.+++ .|+.|++|++.. .++.+..+..|...++.++|+
T Consensus 147 lv~ss~~g~d~~V~~~~~s~---------------------------------------dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 147 LVSSSGTLSDQQVEVMTFAE---------------------------------------DGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp EEEEESSSTTCEEEEEEECT---------------------------------------TSCEEEEEEECCCSSCEEEEE
T ss_pred EEEecccCCCCcEEEEEECC---------------------------------------CCceeeeeccCCCceeeEEee
Confidence 555533 577777777742 233445667888889999999
Q ss_pred c---CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC---CCeeEEEecCCCCCeE------------EEeeCCCeEE
Q 016547 179 P---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLI------------LTGSADNSVR 240 (387)
Q Consensus 179 ~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l------------~~~~~dg~i~ 240 (387)
+ ++ .+|++++.|++|++||+++++ .+..+.+|. ..+.+++|+| ++.++ ++|+.|++|+
T Consensus 188 ~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 188 EVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEETST-TEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEE
T ss_pred ccCCCC-ceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEE
Confidence 8 55 789999999999999999998 667776544 3577789999 88876 5688899999
Q ss_pred EEEeccCCCCCCCCceEEe-----ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 241 MFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
+||..+ ++.+..+ .+|...+.+..++ +. ++|+++.|++|+|||+.++ +++.
T Consensus 264 lWd~~t------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tG---------------k~l~ 319 (356)
T 2w18_A 264 VINPKT------TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLG---------------QCTA 319 (356)
T ss_dssp EEETTT------TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---------------SEEE
T ss_pred EEECCC------CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCC---------------cEEE
Confidence 999988 7766554 3565555544444 55 5789999999999999986 4567
Q ss_pred eeccCCCCee-EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 316 QHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 316 ~~~~~~~~v~-~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++.+|...+. .++|+|++++|+ +|+.|++|+|||+.
T Consensus 320 tL~gH~~~vvs~vafSPDG~~La--------SGS~D~TIklWd~~ 356 (356)
T 2w18_A 320 LLPPVSDQHWSFVKWSGTDSHLL--------AGQKDGNIFVYHYS 356 (356)
T ss_dssp EECCC--CCCCEEEECSSSSEEE--------EECTTSCEEEEEEC
T ss_pred EecCCCCCeEEEEEECCCCCEEE--------EEECCCcEEEecCC
Confidence 7788887665 589999999887 78888999999963
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-30 Score=220.58 Aligned_cols=243 Identities=10% Similarity=0.054 Sum_probs=172.9
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECC--CCCEEEEecC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCP--TEPYVLSGGK 107 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~--~~~~l~s~~~ 107 (387)
.+.|.++.|+| . +++|+.|++|++|+......... ....+.+..+. +|.+ .|.+++|+| +++++++++.
T Consensus 76 ~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s~ 147 (343)
T 3lrv_A 76 TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILD---SKTNKVLREIEVDSAN-EIIYMYGHNEVNTEYFIWADN 147 (343)
T ss_dssp EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEE---TTTCCEEEEEECCCSS-CEEEEECCC---CCEEEEEET
T ss_pred cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEee---cCCcceeEEeecCCCC-CEEEEEcCCCCCCCEEEEEeC
Confidence 45677788888 4 99999999999998764311000 00113233343 5555 799999999 9999999999
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEccCCCeeEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~ 186 (387)
||+|++||++++... ... ..|...|.+++|+|++ .+|+
T Consensus 148 dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~~i~~~~~~pdg-~~la 186 (343)
T 3lrv_A 148 RGTIGFQSYEDDSQY----------------------------------------IVHSAKSDVEYSSGVLHKDS-LLLA 186 (343)
T ss_dssp TCCEEEEESSSSCEE----------------------------------------EEECCCSSCCCCEEEECTTS-CEEE
T ss_pred CCcEEEEECCCCcEE----------------------------------------EEEecCCCCceEEEEECCCC-CEEE
Confidence 999999999864321 222 2355679999999998 8999
Q ss_pred EecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---c
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H 262 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~ 262 (387)
+|+.||.|++||+++++.. ...+.. |...|++++|+| ++.+|++++ |+.|++||+++ .+.+..+.. |
T Consensus 187 sg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------DVGTLAYPTYTIP 257 (343)
T ss_dssp EECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------STTCBSSCCCBC-
T ss_pred EEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------CCcceeecccccc
Confidence 9999999999999988732 145566 999999999999 999999999 55999999998 555444332 3
Q ss_pred cceEE--EEEEcCCCCeeEEEecC-CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc---CCCeE
Q 016547 263 SAAVL--CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA---SDPWT 336 (387)
Q Consensus 263 ~~~i~--~~~~~~~~~~ll~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l 336 (387)
...+. +++|+|+++++ ++++. |+.|++|++....+.. .. .++..++|.+ +...+
T Consensus 258 ~~~~~~~~~~~~~~g~~l-~~~s~~d~~i~v~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~~~l 317 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNM-IAYSNESNSLTIYKFDKKTKNW---------------TK----DEESALCLQSDTADFTDM 317 (343)
T ss_dssp ----CCEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCSE---------------EE----EEEEECCC----CCCCEE
T ss_pred cccccceEEEECCCCCEE-EEecCCCCcEEEEEEcccccce---------------Ee----cCceeEecCcccccccee
Confidence 34444 69999999975 56666 9999999997643211 00 4567777877 66666
Q ss_pred EEEecCCCCCCCCCceEEEEecC
Q 016547 337 VVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 337 ~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+ +++.||.+.++-..
T Consensus 318 ~--------~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 318 D--------VVCGDGGIAAILKT 332 (343)
T ss_dssp E--------EEEETTEEEEEEEC
T ss_pred E--------EEecCCceEEEEec
Confidence 6 34445788877654
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=1.9e-29 Score=219.86 Aligned_cols=268 Identities=11% Similarity=0.071 Sum_probs=200.7
Q ss_pred eeeecCCCcEEEEEecCC-------------CCcEEEEecCC------CcEEEEeccCCCCcccccCCCCCCCeEEEecc
Q 016547 25 HKTIIHPGEVNRIRELPQ-------------NTKIVATHTDS------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH 85 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~-------------~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h 85 (387)
..+.+|...+..+++.+. .+..++.++.+ ++|++||++.. ....+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~ 177 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRS 177 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCC
Confidence 456678888888776641 14455555443 79999999754 34667778
Q ss_pred CCCceEEEEECCCCCEEEEecCCC---eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547 86 QDNAEFALAMCPTEPYVLSGGKDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 162 (387)
Q Consensus 86 ~~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (387)
.. .|.+++|+|+|++|++++.|+ .|++||+.++..
T Consensus 178 ~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------------------- 215 (415)
T 2hqs_A 178 PQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------------------- 215 (415)
T ss_dssp SS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------------------------------
T ss_pred CC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------------------------------
Confidence 76 689999999999999999875 999999976432
Q ss_pred eeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC--
Q 016547 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN-- 237 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg-- 237 (387)
..+..|...+.+++|+|++..++++++.++. |++||+++++ ...+..|...+.+++|+| ++++|++++. ++
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRP 291 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECC-CCCEEEEEECCCCCc
Confidence 3455677789999999999444447776655 9999998876 356667888999999999 9998888876 45
Q ss_pred eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
.|.+||+.+ ++ ...+..+...+.+++|+|+|++|++++.. +..|++||+..... .
T Consensus 292 ~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----------------~ 348 (415)
T 2hqs_A 292 QVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------------Q 348 (415)
T ss_dssp EEEEEETTS------SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----------------E
T ss_pred EEEEEECCC------CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----------------E
Confidence 566777775 43 34555577789999999999976544444 35899999987421 2
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+..+. .+.+++|+|++++++.+..++ ....|++||+. +..+..+..|.+.|.+++|+|
T Consensus 349 ~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~l~~~d~~-------g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 349 VLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp ECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-------SCCEEECCCSSSEEEEEEECC
T ss_pred EecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccEEEEEECC-------CCcEEEeeCCCCCCcCCcccc
Confidence 234443 889999999999887544332 11289999987 556778899999999999998
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=9.9e-30 Score=217.34 Aligned_cols=213 Identities=11% Similarity=0.131 Sum_probs=151.3
Q ss_pred CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547 77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 156 (387)
Q Consensus 77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (387)
.++..+..|.. .|++++|+|+|++|++|+.++ +++|++++....
T Consensus 10 ~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------------------------------- 53 (355)
T 3vu4_A 10 NPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------------------------------- 53 (355)
T ss_dssp ---------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE----------------------------------
T ss_pred CCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCccee----------------------------------
Confidence 45556778877 799999999999999998664 789998753221
Q ss_pred CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC---------
Q 016547 157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD--------- 227 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------- 227 (387)
...+...+..+++.++++.++++++.|+.|++||..+++ .+..+. +...|.++++++ +.
T Consensus 54 --------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~-~~~~~~~~~~i 121 (355)
T 3vu4_A 54 --------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSR-EFIVVSYGDVI 121 (355)
T ss_dssp --------EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEEEEE-CSSCEEEEEECS-SEEEEEETTEE
T ss_pred --------eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEEEEE-CCCceEEEEEcC-CEEEEEEcCEE
Confidence 111222467788888774555778888999999998876 344443 566788888776 31
Q ss_pred --------------------------CeEEE--eeCCCeEEEEEeccCCCC---------CCCCc-eEEeccccceEEEE
Q 016547 228 --------------------------NLILT--GSADNSVRMFDRRNLTSN---------GVGSP-INKFEGHSAAVLCV 269 (387)
Q Consensus 228 --------------------------~~l~~--~~~dg~i~~~d~~~~~~~---------~~~~~-~~~~~~~~~~i~~~ 269 (387)
.++++ |+.||.|++||+++.... ....+ +..+.+|...|.++
T Consensus 122 ~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~ 201 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV 201 (355)
T ss_dssp EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred EEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence 23343 567888888888762100 00012 78889999999999
Q ss_pred EEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeec-c-CCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 270 QWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G-HRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 270 ~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
+|+|++++ |++++.|+. |++||+++. ..+..+. + |...|++++|+|++++++ +
T Consensus 202 ~~s~~g~~-l~s~s~d~~~v~iwd~~~~---------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~--------s 257 (355)
T 3vu4_A 202 RLNRKSDM-VATCSQDGTIIRVFKTEDG---------------VLVREFRRGLDRADVVDMKWSTDGSKLA--------V 257 (355)
T ss_dssp EECTTSSE-EEEEETTCSEEEEEETTTC---------------CEEEEEECTTCCSCEEEEEECTTSCEEE--------E
T ss_pred EECCCCCE-EEEEeCCCCEEEEEECCCC---------------cEEEEEEcCCCCCcEEEEEECCCCCEEE--------E
Confidence 99999985 689999998 999999975 3355555 5 999999999999999877 6
Q ss_pred CCCCceEEEEecCCC
Q 016547 347 TGGGGTLQIWRMSDL 361 (387)
Q Consensus 347 g~~dg~i~iw~~~~~ 361 (387)
|+.|++|++||+...
T Consensus 258 ~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 258 VSDKWTLHVFEIFND 272 (355)
T ss_dssp EETTCEEEEEESSCC
T ss_pred EECCCEEEEEEccCC
Confidence 677799999999853
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=9.9e-29 Score=217.54 Aligned_cols=242 Identities=10% Similarity=0.079 Sum_probs=190.7
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-Eec
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG 106 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~ 106 (387)
.+|.+.|.+++|++ +++++++++.|+.|++||++++ +....+..|.. .+.+++|+|++++++ +++
T Consensus 166 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 231 (433)
T 3bws_A 166 KKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL------------AYKATVDLTGK-WSKILLYDPIRDLVYCSNW 231 (433)
T ss_dssp HTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC------------CEEEEEECSSS-SEEEEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc------------eEEEEEcCCCC-CeeEEEEcCCCCEEEEEec
Confidence 37889999999988 8899999999999999999887 66777777776 689999999999885 555
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.|+.|++||+.++... ..+.. ...+.+++|+|++ ..++
T Consensus 232 ~~~~i~~~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~~~~g-~~l~ 269 (433)
T 3bws_A 232 ISEDISVIDRKTKLEI----------------------------------------RKTDK-IGLPRGLLLSKDG-KELY 269 (433)
T ss_dssp TTTEEEEEETTTTEEE----------------------------------------EECCC-CSEEEEEEECTTS-SEEE
T ss_pred CCCcEEEEECCCCcEE----------------------------------------EEecC-CCCceEEEEcCCC-CEEE
Confidence 8999999999754321 22222 3458999999998 6677
Q ss_pred Eec--------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 187 SVG--------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 187 ~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
+++ .|+.|++||+++++ .... ..+...+.+++|+| +++ ++++++.|+.|++||+.+ ++.+.
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~------~~~~~ 339 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEK--LIDT-IGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKE------KKVQK 339 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTE--EEEE-EEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTT------TEEEE
T ss_pred EEECCCCccccCCCeEEEEECCCCc--EEee-ccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCC------CcEEE
Confidence 666 58899999998876 3333 34566889999999 775 556778999999999997 77777
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecC--------------CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAE--------------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~--------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
.+. +...+.+++|+|+++++++++.. ||.|++||+.+. ..+..+.. ...
T Consensus 340 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~~~~~~~~-~~~ 402 (433)
T 3bws_A 340 SIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------TVKEFWEA-GNQ 402 (433)
T ss_dssp EEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------EEEEEEEC-SSS
T ss_pred Eec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------------cEEEEecC-CCC
Confidence 776 67789999999999976544433 579999999874 22333333 457
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.+++|+|++++++++++. |+.|++|+++
T Consensus 403 ~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~ 431 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFL-------DHQIRVYRRD 431 (433)
T ss_dssp EEEEEECTTSCEEEEEETT-------TTEEEEEEET
T ss_pred CceEEEcCCCCEEEEEECC-------CCeEEEEEec
Confidence 8999999999998864443 5999999987
No 126
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.5e-30 Score=227.66 Aligned_cols=259 Identities=17% Similarity=0.298 Sum_probs=199.7
Q ss_pred eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc--CCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547 83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVG 160 (387)
Q Consensus 83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (387)
.+|.. .|.++.+ ++++|++|+.||.|++||+.++............ ....... .......++.+.+|+..+.+
T Consensus 130 ~~~~~-~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 130 SETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CSSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS--EEEEEETTSCEEEEESSSCC
T ss_pred cCCCC-cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCC--EEEEEcCCCeEEEEECCCCc
Confidence 34444 5777777 8999999999999999999887554333221110 0000111 12223456788889988889
Q ss_pred CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 239 (387)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 239 (387)
.+..+.+|...|.+++|++ ..+++|+.||.|++||++++... ......+|...|.++++ +++++++|+.||.|
T Consensus 205 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i 278 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTI 278 (435)
T ss_dssp EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEE
T ss_pred EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeE
Confidence 9999999999999999974 47999999999999999887632 22566789999999998 56899999999999
Q ss_pred EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
++||+++ ++.+..+.+|...|.+++|+ +. ++++|+.||.|++||+++. ..+..+.+
T Consensus 279 ~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~---------------~~~~~~~~ 334 (435)
T 1p22_A 279 KVWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEG 334 (435)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---------------CEEEEECC
T ss_pred EEEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC---------------CEEEEEeC
Confidence 9999998 88999999999999999995 44 5679999999999999875 34667788
Q ss_pred CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc---ccchhhhhhhccCceEEEeeec
Q 016547 320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
|...|.+++| ++.+++ +|+.||.|++||+...... ....++..+.+|.+.|.+++|.
T Consensus 335 h~~~v~~~~~--~~~~l~--------sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 394 (435)
T 1p22_A 335 HEELVRCIRF--DNKRIV--------SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394 (435)
T ss_dssp CSSCEEEEEC--CSSEEE--------EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred CcCcEEEEEe--cCCEEE--------EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC
Confidence 9999999999 566666 6667799999999731100 0111677888999999999874
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.9e-29 Score=206.19 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=144.3
Q ss_pred CCCcEEEEEecCCC----CcEEEEecC--------------------CCcEEEEeccC-CCCcccccCCCCCCCeEEEec
Q 016547 30 HPGEVNRIRELPQN----TKIVATHTD--------------------SPDVLIWDVEA-QPNRHAVLGATNSRPDLILTG 84 (387)
Q Consensus 30 h~~~v~~i~~~~~~----~~~l~t~~~--------------------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (387)
|.+.|++++|+| + ++++++++. |+.|++|++.. + +.+..+.+
T Consensus 110 ~~~~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG------------~~~~s~~~ 176 (356)
T 2w18_A 110 EIREIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG------------GGKENQFL 176 (356)
T ss_dssp SEEEEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS------------CEEEEEEE
T ss_pred cccceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC------------ceeeeecc
Confidence 456788888888 6 666666553 66677777633 3 55667778
Q ss_pred cCCCceEEEEECC---CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 85 HQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 85 h~~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
|.. .++.++|++ ++.+|++++.|++|++||+++++..
T Consensus 177 ~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l--------------------------------------- 216 (356)
T 2w18_A 177 MPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL--------------------------------------- 216 (356)
T ss_dssp CCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE---------------------------------------
T ss_pred CCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE---------------------------------------
Confidence 876 578899998 7799999999999999999875432
Q ss_pred ceeecCC---CCCeEEEEEccCCCeeE------------EEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEE
Q 016547 162 RGIYNGH---EDTVEDVTFCPSSAQEF------------CSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVD 221 (387)
Q Consensus 162 ~~~~~~~---~~~v~~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~ 221 (387)
..+.+| ...+.+++|+|++ .++ ++|+.|++|++||..+++ .+..+ .+|...+.+.
T Consensus 217 -~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg- 291 (356)
T 2w18_A 217 -KKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFLEG- 291 (356)
T ss_dssp -EEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEEEE-
T ss_pred -EEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeEcc-
Confidence 444443 3467788999998 554 678899999999998876 33332 2555554433
Q ss_pred ecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE-EEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547 222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWDY 293 (387)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ll~s~~~d~~i~vwd~ 293 (387)
+. ++.++++++.|++|+|||+.+ ++++.++.+|...+. .++|+|+|++ |++|+.|++|+|||+
T Consensus 292 -~~-sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 292 -DV-KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY 355 (356)
T ss_dssp -EE-ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred -cc-CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence 33 477899999999999999999 999999999887655 5899999996 679999999999996
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.8e-27 Score=207.33 Aligned_cols=263 Identities=10% Similarity=0.037 Sum_probs=194.9
Q ss_pred CCCcEEEEEecCCCCcEEEEec----CCC----cEEEEec--cCCCCcccccCCCCCCCe--EEEeccCCCceEEEEECC
Q 016547 30 HPGEVNRIRELPQNTKIVATHT----DSP----DVLIWDV--EAQPNRHAVLGATNSRPD--LILTGHQDNAEFALAMCP 97 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~--~~~~~h~~~~v~~~~~~~ 97 (387)
+.+.+...+|.+.+.+++++|+ .|| +|++||+ .++ +.+ ..+.+|.. .+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~ 127 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG------------TVLAQNSYKVNKQ-WLRYAGHTA 127 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT------------CEEEEEEEEECGG-GHHHHHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC------------CEEeeeEEEcChh-HHHHHHHHH
Confidence 3457888888887778888886 568 8999999 777 444 45777776 456666654
Q ss_pred --------------CCCEEEEecCC------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 98 --------------TEPYVLSGGKD------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 98 --------------~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
.+..++.++.+ +.|++||++..
T Consensus 128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------------------------------- 169 (415)
T 2hqs_A 128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------------------------------- 169 (415)
T ss_dssp HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC--------------------------------------
T ss_pred HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC--------------------------------------
Confidence 25566665543 79999998632
Q ss_pred CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC---eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE-Ee
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TG 233 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~ 233 (387)
....+..|...+.+++|+|++ +.|++++.++ .|++||+++++ ...+..|...+.+++|+| ++++|+ ++
T Consensus 170 ---~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~---~~~l~~~~~~~~~~~~sp-dg~~la~~~ 241 (415)
T 2hqs_A 170 ---NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSP-DGSKLAFAL 241 (415)
T ss_dssp ---SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred ---CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc---EEEeecCCCcccCEEEcC-CCCEEEEEE
Confidence 125566788899999999999 7788887775 99999999887 234566788999999999 998777 66
Q ss_pred eCCCe--EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCC
Q 016547 234 SADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNY 309 (387)
Q Consensus 234 ~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~ 309 (387)
+.++. |++||+.+ ++. ..+..|...+.+++|+|+|++|++++..++ .|.+||+....
T Consensus 242 ~~~g~~~i~~~d~~~------~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------------ 302 (415)
T 2hqs_A 242 SKTGSLNLYVMDLAS------GQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------ 302 (415)
T ss_dssp CTTSSCEEEEEETTT------CCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------
T ss_pred ecCCCceEEEEECCC------CCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------------
Confidence 66654 89999886 443 667778889999999999997664554455 67777887642
Q ss_pred CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
...+..+...+.+++|+|+|++++++..++ .++.|++||+. +++. ..+..+. .+.+++|+|
T Consensus 303 ----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~------~~~~-~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 303 ----PQRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLA------TGGV-QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp ----CEECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETT------TCCE-EECCCSS-SCEEEEECT
T ss_pred ----EEEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECC------CCCE-EEecCCC-CcCCeEEcC
Confidence 122344667889999999999888655432 24799999998 4544 3455554 888999987
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.3e-25 Score=201.38 Aligned_cols=282 Identities=10% Similarity=0.090 Sum_probs=202.8
Q ss_pred EEEEEecCCCCcEEEEecCCCcEEEEec--cCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC----CCCEEEEecC
Q 016547 34 VNRIRELPQNTKIVATHTDSPDVLIWDV--EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP----TEPYVLSGGK 107 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~----~~~~l~s~~~ 107 (387)
+.+++|+| ++++|++++.|++|.+||+ .+. +.+..+..+. .+..++|+| +|++|++++.
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~------------~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP------------TKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------EEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEE
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCC------------cEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEc
Confidence 89999999 8999999999999999999 665 5566666443 468999999 9999998884
Q ss_pred -CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCCeeE
Q 016547 108 -DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 108 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l 185 (387)
+++|.+||..+............ .......| ...+..+.++|+++.++
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~------------------------------~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGM------------------------------TVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEE------------------------------CSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred cCCeEEEEeccccccceeecccCc------------------------------ccCccccccCCceEEEEECCCCCEEE
Confidence 89999999876543221110000 00000012 23789999999887888
Q ss_pred EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEecc---
Q 016547 186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEG--- 261 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~--- 261 (387)
++...++.|.+||..+.+......+ .+...+..+.|+| ++++|++++ .++.|.+||..+ ++.+..+..
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t------g~l~~~i~~g~~ 367 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD------RRLSALVDVGKT 367 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEEEEEECSSS
T ss_pred EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC------CeEEEeeccCCC
Confidence 9999999999999988764332233 4667789999999 888766554 589999999998 777777763
Q ss_pred -ccceEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 262 -HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 262 -~~~~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
|.+....+ ++|++..+++++. .|++|.+||+...+.+ ....+++..+.+|...+..++++|++++|.+.
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP--------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--------TTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc--------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 54333333 5787555777875 6899999999873211 01135678888898899999999999998853
Q ss_pred ecCCCCCCC---CCceEEEEecCCCcccccchhh-hh--------hhccCceEEEeeecC
Q 016547 340 VSDDCDSTG---GGGTLQIWRMSDLIYRPQDEVL-AE--------LEKFKAHVISCTSKP 387 (387)
Q Consensus 340 ~s~d~~tg~---~dg~i~iw~~~~~~~~~~~~~~-~~--------~~~~~~~v~~~~f~P 387 (387)
.-. +. .+++|.+||+.+ ++.. .. +..+...+..++|+|
T Consensus 439 ~~~----~~~~~~~~~v~v~d~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 439 TTF----NPDARISQSVAVFDLKN------LDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp CTT----CSSHHHHTCEEEEETTC------TTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred cCC----CCCcccCceEEEEECCC------CCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 200 00 257999999994 4433 22 245678899999987
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=2.4e-25 Score=185.53 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=181.3
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccC-CCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
..+..|.+.|.+++|+| ++++|++++ ++.|++||+.+ + +.......+....+.+++|+|++++|+
T Consensus 35 ~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~l~ 100 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDP------------SPEKVDTGFATICNNDHGISPDGALYA 100 (297)
T ss_dssp EEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCC------------SCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred eeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCC------------CceEeccccccccccceEECCCCCEEE
Confidence 35567899999999999 888888876 78999999998 6 444445566444688999999999999
Q ss_pred Eec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 104 SGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 104 s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
+++ .++...+|.++.... ....+..+ ..+..++|+|++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~~~~~-~~~~~~~~spdg 140 (297)
T 2ojh_A 101 ISDKVEFGKSAIYLLPSTGG---------------------------------------TPRLMTKN-LPSYWHGWSPDG 140 (297)
T ss_dssp EEECTTTSSCEEEEEETTCC---------------------------------------CCEECCSS-SSEEEEEECTTS
T ss_pred EEEeCCCCcceEEEEECCCC---------------------------------------ceEEeecC-CCccceEECCCC
Confidence 988 445666666542100 01222222 348889999999
Q ss_pred CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEec
Q 016547 182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
..++++++.++.+++|+++.... ....+..+...+.+++|+| ++++|+.++ .++.+++|++... ...+..+.
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~~~~ 213 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVERIT 213 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEEECC
T ss_pred CEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcEEEe
Confidence 55555888999999999754332 2455666788899999999 888777666 5899999999732 56677788
Q ss_pred cccceEEEEEEcCCCCeeEEEecCC-----------CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAED-----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
.|...+..++|+|++++|+ .++.+ +.|.+||+..... ..+..+.+|...+..++|
T Consensus 214 ~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGGNV-------------ETLFDLFGGQGTMNSPNW 279 (297)
T ss_dssp CCSEEEEEEEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSCSC-------------EEEEEEEESTTTSCSCCB
T ss_pred cCCcccCCeEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCCCCc-------------eeeeccCCCCcccccceE
Confidence 8888999999999999765 44433 5699999987422 234445578889999999
Q ss_pred ccCCCeEEEEecCC
Q 016547 330 NASDPWTVVSVSDD 343 (387)
Q Consensus 330 ~~~~~~l~~s~s~d 343 (387)
+|+++++++++.++
T Consensus 280 spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 280 SPDGDEFAYVRYFP 293 (297)
T ss_dssp CTTSSEEEEEEECC
T ss_pred CCCCCEEEEEEecc
Confidence 99999888765544
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.4e-25 Score=199.74 Aligned_cols=262 Identities=9% Similarity=0.052 Sum_probs=193.0
Q ss_pred EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEc-
Q 016547 38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI- 116 (387)
Q Consensus 38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~- 116 (387)
+++| ++.++++++.|++|.+||..++ +.+..+..+.. +..++|+|+|++|++++.|++|.+||+
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTC------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCc------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 3677 7789999999999999999988 66677774433 789999999999999999999999999
Q ss_pred -CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc----CCCeeEEEec-C
Q 016547 117 -QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP----SSAQEFCSVG-D 190 (387)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~ 190 (387)
.+.. .+..+. +...+..++|+| ++ +++++++ .
T Consensus 209 ~~t~~----------------------------------------~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~ 246 (543)
T 1nir_A 209 AKEPT----------------------------------------KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYW 246 (543)
T ss_dssp SSSCE----------------------------------------EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEE
T ss_pred CCCCc----------------------------------------EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEcc
Confidence 4322 123333 345679999999 98 6666666 5
Q ss_pred CCeEEEEEccCCCCceeEEeec----------c-CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE--
Q 016547 191 DSCLILWDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-- 257 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-- 257 (387)
++.|.+||..+.+ .+..+.. | ...+..+.++|....++++...++.|.+||..+ .+.+.
T Consensus 247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~------~~~l~~~ 318 (543)
T 1nir_A 247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD------IDNLTVT 318 (543)
T ss_dssp SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT------SSSCEEE
T ss_pred CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC------CCcceeE
Confidence 8999999998877 4444432 2 237889999994456667777899999999987 33332
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc----CCCCeeEEEEccCC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASD 333 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~ 333 (387)
.+. +...+.+++|+|+++++++++..++.|.+||+.+.. +...+.. |.+....+ ++|++
T Consensus 319 ~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~---------------l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 319 SIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR---------------LSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE---------------EEEEEECSSSBCCTTCEEE-EETTT
T ss_pred Eec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe---------------EEEeeccCCCCCCCCCccc-CCCCC
Confidence 443 556678899999999888788889999999999852 2333332 54433333 57886
Q ss_pred CeEEEEecCCCCCCCCCceEEEEecCCCc-ccccchhhhhhhccCceEEEeeecC
Q 016547 334 PWTVVSVSDDCDSTGGGGTLQIWRMSDLI-YRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 334 ~~l~~s~s~d~~tg~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..++++.+ ..|++|.+||+.... .....++++++.+|...+..++|||
T Consensus 382 g~~~~s~~------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 382 GPVWSTSH------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp EEEEEEEB------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred ccEEEecc------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 66666543 135899999998310 0011788899999998888899987
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=2.1e-24 Score=184.60 Aligned_cols=274 Identities=8% Similarity=0.030 Sum_probs=195.3
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecC-------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
......+..++|+| +++++++++. ++.|.+||..++ +....+.... .+..++|+|+|+
T Consensus 37 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~--~~~~~~~s~dg~ 101 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTL------------EVTQAIHNDL--KPFGATINNTTQ 101 (353)
T ss_dssp EEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTC------------CEEEEEEESS--CCCSEEEETTTT
T ss_pred hhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCC------------eEEEEEecCC--CcceEEECCCCC
Confidence 34567789999999 6666666553 568999999988 4555555433 356899999999
Q ss_pred EEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 101 YVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 101 ~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+++ +...++.|.+||..++.......... .. ..-......+.+++|+|
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--------------------------~~-----~~~~~~~~~~~~~~~s~ 150 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDD--------------------------RK-----RTEEVRPLQPRELVADD 150 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCC--------------------------CC-----CCSSCCCCEEEEEEEET
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCC--------------------------Cc-----cccccCCCCCceEEECC
Confidence 654 55668999999998654321111000 00 00000112368899999
Q ss_pred CCCeeEEEe-cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 180 SSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 180 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
++..++++. +.++.|.+||..+++ ....+..+...+..++|+| +++++++++.++.|.+||..+ ++.+..
T Consensus 151 dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~------~~~~~~ 221 (353)
T 3vgz_A 151 ATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD------NKILSR 221 (353)
T ss_dssp TTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT------TEEEEE
T ss_pred CCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC------CeEEEE
Confidence 995444444 458899999998877 4555554566689999999 999999999999999999988 777666
Q ss_pred ecc----ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547 259 FEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334 (387)
Q Consensus 259 ~~~----~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (387)
+.. +...+..++|+|++++++++...++.|.+||+.+... ...+.... ...++|+|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---------------~~~~~~~~--~~~~~~s~dg~ 284 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI---------------LAKVAAPE--SLAVLFNPARN 284 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE---------------EEEEECSS--CCCEEEETTTT
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---------------EEEEEcCC--CceEEECCCCC
Confidence 653 4556889999999998887777779999999987522 22222222 25799999999
Q ss_pred eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+++++... ++.|.+||+. +++.+..+.. ...+.+++|+|
T Consensus 285 ~l~v~~~~-------~~~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~ 323 (353)
T 3vgz_A 285 EAYVTHRQ-------AGKVSVIDAK------SYKVVKTFDT-PTHPNSLALSA 323 (353)
T ss_dssp EEEEEETT-------TTEEEEEETT------TTEEEEEEEC-CSEEEEEEECT
T ss_pred EEEEEECC-------CCeEEEEECC------CCeEEEEEec-CCCCCeEEEcC
Confidence 88875544 4999999998 6777666654 34678888886
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.5e-24 Score=184.78 Aligned_cols=262 Identities=11% Similarity=0.182 Sum_probs=176.2
Q ss_pred eeeeeecCCCcEEEEEecCCCCcEEEEecCC-CcEEEEecc--CCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDS-PDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
+......|...+.+++|+| ++++|++++.+ +.|.+|+++ ++. ...+..+..+. .+..++|+|++
T Consensus 29 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~s~dg 95 (343)
T 1ri6_A 29 TLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESALPG--SLTHISTDHQG 95 (343)
T ss_dssp EEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEECSS--CCSEEEECTTS
T ss_pred EEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccccCC--CCcEEEEcCCC
Confidence 3455567889999999999 77777777665 999999997 331 02233344433 46799999999
Q ss_pred CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
++|++++ .++.|.+||+.++.. ......+.. ...+.+++|+
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~-------------------------------------~~~~~~~~~-~~~~~~~~~s 137 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLP-------------------------------------VGVVDVVEG-LDGCHSANIS 137 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEE-------------------------------------EEEEEEECC-CTTBCCCEEC
T ss_pred CEEEEEecCCCeEEEEECCCCcc-------------------------------------ccccccccC-CCCceEEEEC
Confidence 9886665 488999999942110 001122222 2358889999
Q ss_pred cCCCeeEEEecCCCeEEEEEccC-CCCceeE--Eee-ccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCC
Q 016547 179 PSSAQEFCSVGDDSCLILWDARV-GTSPVIK--VEK-AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVG 253 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~ 253 (387)
|++..+++++..++.|.+||+.+ ++..... ... .....+..++|+| +++++++++ .++.|.+||+.... +
T Consensus 138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~----g 212 (343)
T 1ri6_A 138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH----G 212 (343)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----S
T ss_pred CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----C
Confidence 99944444444899999999987 4421111 222 2345788999999 888665554 78999999996421 2
Q ss_pred Cc--eEEec----cc--cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 254 SP--INKFE----GH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 254 ~~--~~~~~----~~--~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
.. ...+. .+ ...+..++|+|+++++++++..++.|.+||+...... ...+..+..+.. +.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----------~~~~~~~~~~~~-~~ 280 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----------LSKEGFQPTETQ-PR 280 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----------EEEEEEEECSSS-CC
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----------eEEeeeecCCCc-cc
Confidence 22 22222 11 2357789999999988878888999999999842111 022333444443 88
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.++|+|+++++++++. .|+.|.+|+++
T Consensus 281 ~~~~s~dg~~l~~~~~-------~~~~v~v~~~d 307 (343)
T 1ri6_A 281 GFNVDHSGKYLIAAGQ-------KSHHISVYEIV 307 (343)
T ss_dssp CEEECTTSSEEEEECT-------TTCEEEEEEEE
T ss_pred eEEECCCCCEEEEecC-------CCCeEEEEEEc
Confidence 9999999998886443 45999999765
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.2e-25 Score=187.22 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=180.3
Q ss_pred EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCC-CcCccccCC
Q 016547 49 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATDP 127 (387)
Q Consensus 49 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 127 (387)
+++.|++|++||+.++ +. ..+..|.. .|.+++|+|++++|++++ ++.|.+||+.+ +...
T Consensus 17 ~~~~~~~i~~~d~~~~------------~~-~~~~~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~----- 76 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR------------KM-RVVWQTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE----- 76 (297)
T ss_dssp -CCCCEEEEEEETTTT------------EE-EEEEEESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----
T ss_pred CCCcceeEEEEeCCCC------------ce-eeeccCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----
Confidence 4567899999999887 33 34555665 689999999999999987 88999999976 4221
Q ss_pred CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCCeeEEEec--CCCeEEEEEc--cCC
Q 016547 128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVG--DDSCLILWDA--RVG 202 (387)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~--~~~ 202 (387)
.....+ ...+.+++|+|++ ..+++++ .++...+|.+ ..+
T Consensus 77 -----------------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 77 -----------------------------------KVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp -----------------------------------ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC
T ss_pred -----------------------------------EeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC
Confidence 222233 3678899999999 6777776 3345555554 444
Q ss_pred CCceeEEeeccCCCeeEEEecCCCCCeEE-EeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547 203 TSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s 281 (387)
. ...+.. ...+..++|+| ++++|+ +++.++.+++|+++.. ......+..+...+.+++|+|++++++++
T Consensus 121 ~---~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 121 T---PRLMTK-NLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp C---CEECCS-SSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred c---eEEeec-CCCccceEECC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEE
Confidence 3 233333 33588999999 888777 7888999999998642 34456666788889999999999987666
Q ss_pred ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC-----CCceEEEE
Q 016547 282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-----GGGTLQIW 356 (387)
Q Consensus 282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~-----~dg~i~iw 356 (387)
+..++.+++|++..... ....+..|...+..++|+|++++++++..++ ... .++.|++|
T Consensus 191 ~~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGS--------------SVERITDSAYGDWFPHPSPSGDKVVFVSYDA--DVFDHPRDLDVRVQLM 254 (297)
T ss_dssp ECTTSSCEEEEEETTSS--------------CEEECCCCSEEEEEEEECTTSSEEEEEEEET--TCCSCCSSEEEEEEEE
T ss_pred ecCCCCccEEEECCCCC--------------CcEEEecCCcccCCeEECCCCCEEEEEEcCC--CCCcccccCceEEEEE
Confidence 66789999999874222 2344556777899999999999888655432 100 23679999
Q ss_pred ecCCCcccccchh--hhhhhccCceEEEeeecC
Q 016547 357 RMSDLIYRPQDEV--LAELEKFKAHVISCTSKP 387 (387)
Q Consensus 357 ~~~~~~~~~~~~~--~~~~~~~~~~v~~~~f~P 387 (387)
|+. +++. +..+.+|...+..++|+|
T Consensus 255 d~~------~~~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 255 DMD------GGNVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp ETT------SCSCEEEEEEEESTTTSCSCCBCT
T ss_pred ecC------CCCceeeeccCCCCcccccceECC
Confidence 998 4443 444557788888888887
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=5.9e-25 Score=206.48 Aligned_cols=264 Identities=11% Similarity=0.108 Sum_probs=185.7
Q ss_pred CCcEEEEEecCCCCcEEEEecC-CC-----cEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----------------
Q 016547 31 PGEVNRIRELPQNTKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----------------- 87 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------- 87 (387)
...|.+++|+| ++++|++++. |+ .|++||+.+++ ....+..+..
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQ------------TRLLVDSKVVLPGTETLSDEEKARRER 102 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCC------------EEEEECGGGTC----------------
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCc------------eeEccchhhcccccccccchhhhhhhh
Confidence 56799999999 8999999888 88 89999999883 3333333321
Q ss_pred ------CceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 88 ------NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 88 ------~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
..|.+++|+|||++|++++. +.|.+||+.++... .
T Consensus 103 ~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~ 143 (741)
T 2ecf_A 103 QRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------A 143 (741)
T ss_dssp ----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------S
T ss_pred hhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------e
Confidence 13678999999999999886 99999999764100 1
Q ss_pred ceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCC----------------eeEEEecCC
Q 016547 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD----------------LHCVDWNPL 225 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~ 225 (387)
...+..|...+..++|+|+| +.++.++ ++.|++||+.+++ .......+... +..++|+|
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp- 218 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP- 218 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-
T ss_pred EEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-
Confidence 13345567789999999999 6677766 4699999998765 22222222221 47899999
Q ss_pred CCCeEEEeeCCC---------------------------------eEEEEEeccCCCCCCCCceEEec---cccceEEEE
Q 016547 226 DDNLILTGSADN---------------------------------SVRMFDRRNLTSNGVGSPINKFE---GHSAAVLCV 269 (387)
Q Consensus 226 ~~~~l~~~~~dg---------------------------------~i~~~d~~~~~~~~~~~~~~~~~---~~~~~i~~~ 269 (387)
++++|++++.|+ .|.+||+.+. .....+. .|...+..+
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~------~~~~~~~~~~~~~~~~~~~ 292 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ------AQTQWIDLGKEQDIYLARV 292 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT------CCCEEECCCSCSSEEEEEE
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC------CceEEecCCCCcceEEEEE
Confidence 999999988765 7888887640 2222222 477889999
Q ss_pred EEcCCCCeeEEEec----CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC----CeeEEEEccCCCeEEEEec
Q 016547 270 QWSPDKSSVFGSSA----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD----KVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 270 ~~~~~~~~ll~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~s~s 341 (387)
+| |||++|++++. .+..|++||+.+... ...+..+.. .+..++|+|+|+ +++
T Consensus 293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---------------~~~~~~~~~~~~~~~~~~~~spdg~-~~~--- 352 (741)
T 2ecf_A 293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---------------RVLAHETSPTWVPLHNSLRFLDDGS-ILW--- 352 (741)
T ss_dssp EE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---------------EEEEEEECSSCCCCCSCCEECTTSC-EEE---
T ss_pred Ee-CCCCEEEEEEecccCCeEEEEEEECCCCce---------------EEEEEcCCCCcCCcCCceEECCCCe-EEE---
Confidence 99 99998654443 367899999987532 222222322 456899999999 444
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe-eecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC-TSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~-~f~P 387 (387)
+++.||.++||.++. .+. +..+..|...|.++ .|+|
T Consensus 353 ----~~~~~g~~~l~~~~~-----~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 353 ----SSERTGFQHLYRIDS-----KGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp ----EECTTSSCEEEEECS-----SSC-EEESCCSSSCEEEEEEEET
T ss_pred ----EecCCCccEEEEEcC-----CCC-eeeeeecceEEEeEeEEeC
Confidence 344458888887762 234 66777777888777 4876
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.1e-23 Score=178.41 Aligned_cols=248 Identities=9% Similarity=0.060 Sum_probs=174.5
Q ss_pred cCCCcEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCC-eEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 29 IHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP-DLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
.+...+ +++|+| +++ +++++..++.|.+||+.++ +. ...+..+.. +..+++|+|+|++|+++.
T Consensus 38 ~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~ 102 (331)
T 3u4y_A 38 LGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLE------------PPKVVAIQEGQS-SMADVDITPDDQFAVTVT 102 (331)
T ss_dssp CCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSS------------SCEEEEEEECSS-CCCCEEECTTSSEEEECC
T ss_pred ccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCC------------ceeEEecccCCC-CccceEECCCCCEEEEec
Confidence 345556 999999 666 5555555899999999988 44 555666654 444499999999999666
Q ss_pred CCC---eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 107 KDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 107 ~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
.++ .|.+||+.++... ..+.. .....+++|+|++..
T Consensus 103 ~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 103 GLNHPFNMQSYSFLKNKFI----------------------------------------STIPI-PYDAVGIAISPNGNG 141 (331)
T ss_dssp CSSSSCEEEEEETTTTEEE----------------------------------------EEEEC-CTTEEEEEECTTSSC
T ss_pred CCCCcccEEEEECCCCCeE----------------------------------------EEEEC-CCCccceEECCCCCE
Confidence 553 8999999764321 22222 334689999999955
Q ss_pred eEEEecCCCe-EEEEEccCCCCcee--EEeeccCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCCCCCCc---e
Q 016547 184 EFCSVGDDSC-LILWDARVGTSPVI--KVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSP---I 256 (387)
Q Consensus 184 ~l~~~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~---~ 256 (387)
++++...++. |.+|++........ .........+..++|+| +++++++ +..++.|.+||+.+ ++. +
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~~~~~~~ 214 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------PENITLL 214 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------TTSCEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------Cccccee
Confidence 6666667688 99999986442110 12223455689999999 8885554 45689999999987 666 6
Q ss_pred EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc----CC---CCeeEEEE
Q 016547 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HR---DKVVDFHW 329 (387)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~v~~~~~ 329 (387)
..+.. ...+..++|+|+|++++++...++.|.+||+.+..... +..+.. +. .....++|
T Consensus 215 ~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
T 3u4y_A 215 NAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-------------VKSFGHGLLIDPRPLFGANQMAL 280 (331)
T ss_dssp EEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-------------EEEEECCCCCCCGGGTTCCCEEE
T ss_pred eeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-------------ecccccccccCCCCcccccceEE
Confidence 66664 45678999999999877777778899999998743211 111111 11 12356899
Q ss_pred ccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+|+++++++++.++ +.|.+||+..
T Consensus 281 spdg~~l~v~~~~~-------~~v~v~d~~~ 304 (331)
T 3u4y_A 281 NKTETKLFISANIS-------RELKVFTISG 304 (331)
T ss_dssp CTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred CCCCCEEEEecCCC-------CcEEEEEecC
Confidence 99999998765544 8999999983
No 137
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=1.3e-24 Score=189.96 Aligned_cols=223 Identities=11% Similarity=0.102 Sum_probs=158.7
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCC----CCCCCeEEEeccCCCceEEEEECCCCCEEE---
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA----TNSRPDLILTGHQDNAEFALAMCPTEPYVL--- 103 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~--- 103 (387)
...++.+++++ .+.++++++.|+ +++|+............. ........+ .+.. .|.+++|+|++++|+
T Consensus 36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF-PIHHLALSCDNLTLSACM 111 (434)
T ss_dssp CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS-CEEEEEECTTSCEEEEEE
T ss_pred CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC-cccEEEEcCCCCEEEEEE
Confidence 34588999999 777888898887 999886543111000000 000111122 2333 699999999999999
Q ss_pred -EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547 104 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 182 (387)
Q Consensus 104 -s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (387)
+++.|+.|++||+.+....... ..........+.+|...|.+++|+|+++
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 162 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQ-----------------------------QKRPFAYHKLLKDAGGMVIDMKWNPTVP 162 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCS-----------------------------SCCCSEEEECCCSGGGSEEEEEECSSCT
T ss_pred eccCCCceEEEEEccccccCCcC-----------------------------CcceeeeeeccCCCCCceEEEEECCCCC
Confidence 8999999999999753110000 0000111245567999999999999854
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG- 261 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~- 261 (387)
.+|++++.||+|++||++++. .......|...|++++|+| ++++|++|+.||.|++||.+. .....+..
T Consensus 163 ~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~ 232 (434)
T 2oit_A 163 SMVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCP 232 (434)
T ss_dssp TEEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCC
T ss_pred CEEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCC
Confidence 899999999999999999875 4445567888999999999 899999999999999999882 33333332
Q ss_pred ------ccceEEEEEEcCCCCeeEEEecCCCe------EEEEeCCCC
Q 016547 262 ------HSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEKV 296 (387)
Q Consensus 262 ------~~~~i~~~~~~~~~~~ll~s~~~d~~------i~vwd~~~~ 296 (387)
|...|.+++|++++.++++....||. +++|++++.
T Consensus 233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 33489999999998866555555543 899999874
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=1e-23 Score=179.85 Aligned_cols=273 Identities=11% Similarity=0.158 Sum_probs=181.2
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
+.......+...+..++|+| ++++++++.. ++.|.+|++.++.. +.+..+..+.. .+..++|+|+|
T Consensus 30 ~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~----------~~~~~~~~~~~-~p~~~a~spdg 97 (347)
T 3hfq_A 30 LTNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTA----------HKLNTVVAPGT-PPAYVAVDEAR 97 (347)
T ss_dssp EEEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEE----------EEEEEEEEESC-CCSEEEEETTT
T ss_pred EEEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcE----------EEeeeeecCCC-CCEEEEECCCC
Confidence 33445556778889999999 7775555432 68999999976621 23333344554 46799999999
Q ss_pred CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
++|++++ .++.|.+|++............ ... ...+. ...+...+.+++|+
T Consensus 98 ~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~--~~~------------------------~~~p~--~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 98 QLVYSANYHKGTAEVMKIAADGALTLTDTV--QHS------------------------GHGPR--PEQDGSHIHYTDLT 149 (347)
T ss_dssp TEEEEEETTTTEEEEEEECTTSCEEEEEEE--ECC------------------------CCCSS--TTCSSCCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCeeeccee--ecC------------------------CCCCC--ccccCCCceEEEEC
Confidence 9888877 7899999999632110000000 000 00000 01233468899999
Q ss_pred cCCCeeEEEecCCCeEEEEEcc-CCCCceeEEeec-cCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCCCCCC-
Q 016547 179 PSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKA-HDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGS- 254 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~- 254 (387)
|++ +++++...++.|.+||+. .++......... ....+..++|+| +++++++ +..++.|.+|++.... ++
T Consensus 150 pdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~ 223 (347)
T 3hfq_A 150 PDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAF 223 (347)
T ss_dssp TTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEE
T ss_pred CCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----Cce
Confidence 999 477888889999999998 443211222222 234678899999 8885555 5668999999988421 22
Q ss_pred -ceEEecccc------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 255 -PINKFEGHS------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 255 -~~~~~~~~~------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
.+..+.... ..+..++|+|+|++|+++...++.|.+|++...+.. ..+..+..+...+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~------------~~~~~~~~~~~~~~~~ 291 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL------------TLIQQISTEGDFPRDF 291 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE------------EEEEEEECSSSCCCEE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE------------EEeEEEecCCCCcCeE
Confidence 222332222 458899999999988778888999999999743211 2344555666678999
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+|+|++++|+++..++ +.|.+|+++
T Consensus 292 ~~spdg~~l~v~~~~~-------~~v~v~~~d 316 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQNT-------DNATLYARD 316 (347)
T ss_dssp EECTTSSEEEEEETTT-------TEEEEEEEC
T ss_pred EECCCCCEEEEEEcCC-------CcEEEEEEe
Confidence 9999999988755443 899999765
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=5.6e-24 Score=180.29 Aligned_cols=238 Identities=11% Similarity=0.033 Sum_probs=169.0
Q ss_pred EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-CCeEEEEEc
Q 016547 38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSI 116 (387)
Q Consensus 38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~ 116 (387)
.|.+..+.++++++.++.|.+||.+++ +....+..+.. .+ .++|+|+++++++++. ++.|.+||+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL------------EILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC------------CEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc------------ceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 345546677889999999999999988 55555655544 45 9999999997766554 889999999
Q ss_pred CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC---e
Q 016547 117 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---C 193 (387)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~ 193 (387)
.++... ...+..+..+..+++|+|++ ++++++..++ .
T Consensus 70 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 70 QLEPPK---------------------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFN 109 (331)
T ss_dssp SSSSCE---------------------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCE
T ss_pred CCCcee---------------------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCccc
Confidence 764320 23344455555559999999 6666555553 8
Q ss_pred EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCe-EEEEEeccCCCCCCCCce----EEeccccceEE
Q 016547 194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNS-VRMFDRRNLTSNGVGSPI----NKFEGHSAAVL 267 (387)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~-i~~~d~~~~~~~~~~~~~----~~~~~~~~~i~ 267 (387)
|.+||+.+++ ....+. ....+.+++|+| ++++++++ ..++. |.+|++.. ...+ .........+.
T Consensus 110 i~v~d~~~~~--~~~~~~-~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 110 MQSYSFLKNK--FISTIP-IPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDA------DGVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp EEEEETTTTE--EEEEEE-CCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECT------TCCEEEEEEEEECSSSSEE
T ss_pred EEEEECCCCC--eEEEEE-CCCCccceEECC-CCCEEEEEecCCCceEEEEEECC------CCcEeecCCccccCCCCcc
Confidence 9999998876 344443 445679999999 88755554 55588 99999885 2222 11112345678
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg 347 (387)
.++|+|+|+++++++..++.|.+||+...... ..+..+. ....+..++|+|++++++++..
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------------~~~~~~~-~~~~~~~~~~spdg~~l~v~~~------ 240 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNPENI------------TLLNAVG-TNNLPGTIVVSRDGSTVYVLTE------ 240 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSSTTSC------------EEEEEEE-CSSCCCCEEECTTSSEEEEECS------
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCccc------------ceeeecc-CCCCCceEEECCCCCEEEEEEc------
Confidence 99999999988888888999999999874320 1123333 3356789999999998887543
Q ss_pred CCCceEEEEecC
Q 016547 348 GGGGTLQIWRMS 359 (387)
Q Consensus 348 ~~dg~i~iw~~~ 359 (387)
.++.|.+||+.
T Consensus 241 -~~~~i~~~d~~ 251 (331)
T 3u4y_A 241 -STVDVFNFNQL 251 (331)
T ss_dssp -SEEEEEEEETT
T ss_pred -CCCEEEEEECC
Confidence 34899999998
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.9e-23 Score=177.88 Aligned_cols=272 Identities=8% Similarity=0.103 Sum_probs=173.3
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC-CeEEEEEcC--CC
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-KSVVLWSIQ--DH 119 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~ 119 (387)
...++++++.|+.|++||++.... ...... ..|.. .+.+++|+|++++|++++.+ +.|.+|++. ++
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~---------~~~~~~-~~~~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~ 72 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGA---------LTLTQV-VDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 72 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSC---------EEEEEE-EECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCc---------EEEeee-EecCC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence 334555658899999999964210 012222 23444 47899999999998888876 999999997 22
Q ss_pred cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEc
Q 016547 120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 199 (387)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 199 (387)
.. ..+..+..+. .+..++|+|++..+++++..++.|.+||+
T Consensus 73 ~~--------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 73 AL--------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CE--------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ce--------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 11 1112233333 67899999999445556666899999999
Q ss_pred cCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceE--Eecc-ccceEEEEEEcCC
Q 016547 200 RVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPIN--KFEG-HSAAVLCVQWSPD 274 (387)
Q Consensus 200 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~ 274 (387)
..+.. ...... .....+.+++|+| +++++++++ .++.|++||+..... ...+. .+.. ....+.+++|+|+
T Consensus 114 ~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 114 EDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp ETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTTCCEEEEEECTT
T ss_pred CCCccccccccc-cCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc---eeeecccccccCCCCCcceEEECCC
Confidence 53221 122233 3345689999999 888888777 899999999985210 11111 2222 3457889999999
Q ss_pred CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-c--CCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547 275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 351 (387)
Q Consensus 275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg 351 (387)
++++++++..++.|.+||+......... ........ + ....+..++|+|++++++++.+. |+
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-------~~ 253 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIEC--------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-------AS 253 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEE--------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-------TT
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEE--------EeeccccCccccccCCccceEECCCCCEEEEEecC-------CC
Confidence 9988777778999999999642111000 01111111 1 12357789999999998875544 49
Q ss_pred eEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 352 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 352 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.|++|++.... ...+.+..+..+.. +.+++|+|
T Consensus 254 ~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~ 286 (343)
T 1ri6_A 254 LITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDH 286 (343)
T ss_dssp EEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECT
T ss_pred EEEEEEEcCCC--CceEEeeeecCCCc-cceEEECC
Confidence 99999998210 01233334443333 67777775
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=4e-22 Score=170.97 Aligned_cols=295 Identities=8% Similarity=0.036 Sum_probs=187.3
Q ss_pred eeeeecCCCcEEEEEecCCCCcEEEEecCC----CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 24 KHKTIIHPGEVNRIRELPQNTKIVATHTDS----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
..... |...+..++|+| ++++|++++.+ +.|.+|+++..... .+.+.....+.. ....+++ ++
T Consensus 43 ~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~--------~~~~~~~~~~~~-~p~~~~~--dg 109 (361)
T 3scy_A 43 PLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGT--------LHLLNTQKTMGA-DPCYLTT--NG 109 (361)
T ss_dssp EEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTE--------EEEEEEEECSSS-CEEEEEE--CS
T ss_pred Eeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCc--------EEEeeEeccCCC-CcEEEEE--CC
Confidence 33444 778888999999 88888888775 79999998763100 012223333333 3457777 88
Q ss_pred CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547 100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 178 (387)
Q Consensus 100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (387)
++|++++ .++.|.+|++.............. . .+ ... .....+...+.+++|+
T Consensus 110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-~-~g---------------------~~~---~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 110 KNIVTANYSGGSITVFPIGQDGALLPASDVIE-F-KG---------------------SGP---DKERQTMPHLHCVRIT 163 (361)
T ss_dssp SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEE-C-CC---------------------CCS---CTTTCSSCCEEEEEEC
T ss_pred CEEEEEECCCCEEEEEEeCCCCcCcccceeEE-c-cC---------------------CCC---CccccCCCcceEEEEC
Confidence 8777665 688999999975322111100000 0 00 000 0011233457899999
Q ss_pred cCCCeeEEEecCCCeEEEEEccCCCC----c-e------eEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEecc
Q 016547 179 PSSAQEFCSVGDDSCLILWDARVGTS----P-V------IKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN 246 (387)
Q Consensus 179 ~~~~~~l~~~~~dg~i~iwd~~~~~~----~-~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~ 246 (387)
|++..++++...++.|.+|++..... . . ..........+..++|+| +++++++++ .++.|.+||+.+
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC
Confidence 99955666666789999999876542 1 1 122233456688999999 998887777 689999999985
Q ss_pred CCCCCCCCc--eEEec---cccceEEEEEEcCCCCeeEEEecC-CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547 247 LTSNGVGSP--INKFE---GHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 320 (387)
Q Consensus 247 ~~~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~ll~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
+.. +..+. .+......++|+|+|++|+++... ++.|.+|++....... ..+..+..
T Consensus 243 ------g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-----------~~~~~~~~- 304 (361)
T 3scy_A 243 ------GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-----------TKVGYQLT- 304 (361)
T ss_dssp ------TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-----------EEEEEEEC-
T ss_pred ------CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-----------EEeeEecC-
Confidence 432 33332 233456899999999987766666 7899999997321110 12333333
Q ss_pred CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh-hccCceEEEeeecC
Q 016547 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP 387 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~f~P 387 (387)
...+..++|+|++++|+++...+ +.|.+|+++.. ++++.... ..+...+.+++|.+
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~-------~~v~v~~~d~~----~g~~~~~~~~~~~~~p~~v~~~~ 361 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDT-------NVIQIFERDQA----TGLLTDIKKDIKVDKPVCLKFVD 361 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTT-------TEEEEEEECTT----TCCEEECSCCEECSSEEEEEEEC
T ss_pred CCCCceEEECCCCCEEEEEECCC-------CCEEEEEEECC----CCcEeecceeeeCCCCeEEEEcC
Confidence 45778999999999988755444 89999877621 44443332 23445788888863
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=4.5e-24 Score=199.96 Aligned_cols=230 Identities=11% Similarity=0.114 Sum_probs=164.3
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--ceEEEEECCCCCEEEEecCC-
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEPYVLSGGKD- 108 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~~~~~l~s~~~d- 108 (387)
..+.+++|+| +++++++ +.||+|++||+.++ +....+.+|... .|.+++|+|||++|++++.+
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~ 82 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETN------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE 82 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGC------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCC------------cEEEEeccccccccccceEEECCCCCEEEEEecCc
Confidence 3467899999 7787766 78999999999998 555666666531 37899999999999998764
Q ss_pred --------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 109 --------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 109 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
+.+.+||+.++... .+.....|...+..++|+|+
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~~--------------------------------------~l~~~~~~~~~~~~~~~SPd 124 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDPQ--------------------------------------SLDPPEVSNAKLQYAGWGPK 124 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCCE--------------------------------------ECCCTTCCSCCCSBCCBCSS
T ss_pred cceeecceeeEEEEECCCCceE--------------------------------------eccCCccccccccccEECCC
Confidence 78889999865321 01112344556889999999
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCC------------------eeEEEecCCCCCeEEEeeCCC-----
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD------------------LHCVDWNPLDDNLILTGSADN----- 237 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~~l~~~~~dg----- 237 (387)
| +.|+.++. +.|++||+.+++. ......+... +.+++|+| +++.|++++.|+
T Consensus 125 G-~~la~~~~-~~i~~~~~~~g~~--~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 125 G-QQLIFIFE-NNIYYCAHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPI 199 (723)
T ss_dssp T-TCEEEEET-TEEEEESSSSSCC--EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCE
T ss_pred C-CEEEEEEC-CeEEEEECCCCce--EEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccce
Confidence 9 67777765 7999999988773 3333332322 37899999 999999987653
Q ss_pred -----------------------------eEEEEEeccCCCCCCCCceEEeccc------cceEEEEEEcCCCCeeEEEe
Q 016547 238 -----------------------------SVRMFDRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSS 282 (387)
Q Consensus 238 -----------------------------~i~~~d~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~ 282 (387)
.|++||+.+ ++....+..+ ...+..++|+|||+.+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 789999887 5554555543 67899999999999653332
Q ss_pred c---CCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-ccCCCCe----eEEEEccCCCeEEEE
Q 016547 283 A---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKV----VDFHWNASDPWTVVS 339 (387)
Q Consensus 283 ~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v----~~~~~~~~~~~l~~s 339 (387)
. .+..|++||+.++.. ...+ ..+...+ ..++|+|+|+.+++.
T Consensus 274 ~~~~~~~~i~~~d~~~g~~---------------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVC---------------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp ETTSCEEEEEEEETTTCCE---------------EEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred cCCCCeEEEEEEeCCCCcc---------------eEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 2 346799999987522 1111 2233443 378999999988865
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=3.2e-24 Score=201.53 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=188.7
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
..|.+++|+| ++++|++++. +.|++||+.++.. .....+..|.. .+..++|+|||++|+.++ ++.|
T Consensus 109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~----------~~~~~l~~~~~-~~~~~~~SPDG~~la~~~-~~~i 174 (741)
T 2ecf_A 109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK----------AAVRQLTHGEG-FATDAKLSPKGGFVSFIR-GRNL 174 (741)
T ss_dssp EESCCCEECT-TSSEEEEEET-TEEEEEESSSCST----------TSCCBCCCSSS-CEEEEEECTTSSEEEEEE-TTEE
T ss_pred cCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc----------ceEEEcccCCc-ccccccCCCCCCEEEEEe-CCcE
Confidence 3488999999 8888888876 8999999987610 02223455554 588999999999999987 5699
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
.+||+.++......... ...+. ..............+..+.|+||| +.|++++.|
T Consensus 175 ~~~d~~~g~~~~~~~~~-------~~~~~-----------------~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d 229 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADG-------STTIG-----------------NGIAEFVADEEMDRHTGYWWAPDD-SAIAYARID 229 (741)
T ss_dssp EEEETTTTEEEECCCCC-------CSSEE-----------------ESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEE
T ss_pred EEEecCCCCEEEeccCC-------cccee-----------------ccccceeeeeccccccceEECCCC-CEEEEEEEc
Confidence 99999865322111000 00000 000000000011235789999999 677777655
Q ss_pred C---------------------------------eEEEEEccC-CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC--
Q 016547 192 S---------------------------------CLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-- 235 (387)
Q Consensus 192 g---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 235 (387)
+ .|.+||+.+ ++...+.....|...+..++| | ++++|++++.
T Consensus 230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~ 307 (741)
T 2ecf_A 230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSR 307 (741)
T ss_dssp CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEET
T ss_pred CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecc
Confidence 4 788999988 762211111146778999999 9 9999887764
Q ss_pred ---CCeEEEEEeccCCCCCCCCceEEeccccc----eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547 236 ---DNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 308 (387)
Q Consensus 236 ---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 308 (387)
+..|++||+.+ ++....+..+.. .+..++|+|+|+ ++++++.||.++||.+...+
T Consensus 308 ~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~----------- 369 (741)
T 2ecf_A 308 DQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG----------- 369 (741)
T ss_dssp TSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-----------
T ss_pred cCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-----------
Confidence 56899999987 666666654443 346899999999 56788889988888776321
Q ss_pred CCceeeeeeccCCCCeeEE-EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 309 YPAGLFFQHAGHRDKVVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
. ...+..|...+..+ .|+|+++.++++++.+ ....++||++.. .+..+..+.. ...+.+++|+|
T Consensus 370 ---~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~-----~~~~~~l~~~~~-----~g~~~~~l~~-~~~~~~~~~sp 434 (741)
T 2ecf_A 370 ---K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE-----SARESQIYAVPL-----QGGQPQRLSK-APGMHSASFAR 434 (741)
T ss_dssp ---C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS-----CTTCBEEEEEET-----TCCCCEECCC-SCSEEEEEECT
T ss_pred ---C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC-----CCceEEEEEEEc-----CCCCeeeccc-CCCceEEEECC
Confidence 1 33445677778887 5999999888765443 112899999862 2444455554 56678888887
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=5.9e-23 Score=191.85 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=177.8
Q ss_pred eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccC-----CCCcccccCCCCCCCeEEEeccCC------------
Q 016547 25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-----QPNRHAVLGATNSRPDLILTGHQD------------ 87 (387)
Q Consensus 25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~h~~------------ 87 (387)
..+..+.+.+.+++|+| +++.||++ .|+.|++||+.+ ++. ......+..
T Consensus 114 ~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~------------~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 114 TYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA------------IAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC------------EESCSCCBTTEEESSCCGGGC
T ss_pred EEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc------------EEeccCCCCCeEcccchhhhh
Confidence 34456788899999999 88888885 679999999988 632 211222211
Q ss_pred -CceEEEEECCCCCEEEEec---------------------------------CCCeEEEEEcCCCcCccccCCCcccCC
Q 016547 88 -NAEFALAMCPTEPYVLSGG---------------------------------KDKSVVLWSIQDHITSSATDPATAKSA 133 (387)
Q Consensus 88 -~~v~~~~~~~~~~~l~s~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 133 (387)
..+.++.|+|||++|++++ .+..|.+||+.++....
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~---------- 249 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY---------- 249 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----------
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----------
Confidence 1247899999999999887 33567777776432110
Q ss_pred CCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC-----eEEEEEccCCCCceeE
Q 016547 134 GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIK 208 (387)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~ 208 (387)
+.....|...+..++|+|++ +.+++++.++ .|.+||+.+++. ...
T Consensus 250 ----------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~ 299 (706)
T 2z3z_A 250 ----------------------------LQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRT 299 (706)
T ss_dssp ----------------------------CCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEE
T ss_pred ----------------------------eccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeE
Confidence 01112456779999999999 6677766554 899999998731 111
Q ss_pred Ee-eccCC---CeeEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE-EEEcCCCCeeEEEe
Q 016547 209 VE-KAHDA---DLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSS 282 (387)
Q Consensus 209 ~~-~~~~~---~i~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ll~s~ 282 (387)
.. ..+.. .+..++|+| .+++++++++.||.+++|++... +..+..+..+...+.. ++|+|+++.+++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 11 12222 246789998 25678899999999999998731 6677778777777876 79999999887777
Q ss_pred cCCC----eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 283 AEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 283 ~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
+.++ .|..||+.... ...+ .|...+.+++|+|++++++++++++ ...+.|++||+
T Consensus 375 ~~~~~~~~~l~~~d~~~~~----------------~~~l-~~~~~~~~~~~spdg~~l~~~~~~~----~~p~~i~l~d~ 433 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK----------------TKDL-TPESGMHRTQLSPDGSAIIDIFQSP----TVPRKVTVTNI 433 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC----------------CEES-CCSSSEEEEEECTTSSEEEEEEECS----SCSCEEEEEES
T ss_pred cCCCCceEEEEEEEcCCCC----------------ceec-cCCCceEEEEECCCCCEEEEEecCC----CCCcEEEEEEC
Confidence 7665 56666665531 1111 2566789999999999988776532 33467999998
Q ss_pred CC
Q 016547 359 SD 360 (387)
Q Consensus 359 ~~ 360 (387)
..
T Consensus 434 ~~ 435 (706)
T 2z3z_A 434 GK 435 (706)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.7e-23 Score=195.39 Aligned_cols=278 Identities=11% Similarity=0.153 Sum_probs=184.3
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
..|.+++|+| ++.++++ .++.|++||+.++ +. ..+..+.. .+.+++|+|||++|+++ .|+.|
T Consensus 82 ~~v~~~~~sp-d~~~~~~--~~~~i~~~d~~~~------------~~-~~l~~~~~-~~~~~~~SpdG~~la~~-~~~~i 143 (706)
T 2z3z_A 82 FPSFRTLDAG-RGLVVLF--TQGGLVGFDMLAR------------KV-TYLFDTNE-ETASLDFSPVGDRVAYV-RNHNL 143 (706)
T ss_dssp CCCEEEEETT-TTEEEEE--ETTEEEEEETTTT------------EE-EEEECCTT-CCTTCEECTTSSEEEEE-ETTEE
T ss_pred cCceeEEECC-CCeEEEE--ECCEEEEEECCCC------------ce-EEccCCcc-cccCCcCCCCCCEEEEE-ECCeE
Confidence 5699999999 5555555 3589999999877 32 23444444 47789999999999985 58999
Q ss_pred EEEEcCC-----CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 112 VLWSIQD-----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 112 ~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.+||+.+ +......... ..... . +.. ..+.+...+.++.|+||| +.|+
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~-------~~~~~--------------~---g~~--~~~ee~~~~~~~~~SpDg-~~la 196 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDG-------TETLV--------------Y---GQA--VHQREFGIEKGTFWSPKG-SCLA 196 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCC-------BTTEE--------------E---SSC--CGGGCTTCCCSEEECTTS-SEEE
T ss_pred EEEecCcccccCCCcEEeccCC-------CCCeE--------------c---ccc--hhhhhcCCCceEEECCCC-CEEE
Confidence 9999986 4321110000 00000 0 000 112223456889999999 6677
Q ss_pred Eec---------------------------------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547 187 SVG---------------------------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 233 (387)
Q Consensus 187 ~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (387)
+++ .+..|.+||+.+++...+.....|...+.+++|+| +++.|+++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~ 275 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVA 275 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEE
Confidence 765 45789999998876211111124667899999999 99999998
Q ss_pred eCCC-----eEEEEEeccCCCCCCCCceEEec--cccc---eEEEEEEcC--CCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547 234 SADN-----SVRMFDRRNLTSNGVGSPINKFE--GHSA---AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 234 ~~dg-----~i~~~d~~~~~~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 301 (387)
+.++ .|.+||+.+ ++....+. .+.. .+..++|+| +|++ +++++.|+.++||++.....
T Consensus 276 ~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~~~~g~~~l~~~~~~~~--- 345 (706)
T 2z3z_A 276 EVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQSRRDGWNHLYLYDTTGR--- 345 (706)
T ss_dssp EECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEECTTSSCEEEEEETTSC---
T ss_pred EeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCEE-EEEEccCCccEEEEEECCCC---
Confidence 8776 899999987 53333332 1221 246789999 9984 66888899999998873222
Q ss_pred cCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceE
Q 016547 302 QGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV 380 (387)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v 380 (387)
....+..+...+.. ++|+|+++.++++++.+ +.....|..||+. +++ +..+. |...+
T Consensus 346 -----------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~---~~~~~~l~~~d~~------~~~-~~~l~-~~~~~ 403 (706)
T 2z3z_A 346 -----------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA---SPLERHFYCIDIK------GGK-TKDLT-PESGM 403 (706)
T ss_dssp -----------EEEECCCSSSCEEEEEEECTTSSEEEEEESSS---CTTCBEEEEEETT------CCC-CEESC-CSSSE
T ss_pred -----------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCC---CCceEEEEEEEcC------CCC-ceecc-CCCce
Confidence 24445667777877 79999999988766543 1112367777776 333 33333 66778
Q ss_pred EEeeecC
Q 016547 381 ISCTSKP 387 (387)
Q Consensus 381 ~~~~f~P 387 (387)
.+++|+|
T Consensus 404 ~~~~~sp 410 (706)
T 2z3z_A 404 HRTQLSP 410 (706)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 8999987
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=1.5e-23 Score=183.23 Aligned_cols=228 Identities=15% Similarity=0.196 Sum_probs=155.5
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.++.+++++++.++++++.|+ +++|+............ ... ....... .....+
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-------~~~-----------------~~~~~~~-~~~~~~ 91 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-------DPN-----------------KIVDKVQ-GLLVPM 91 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-------CTT-----------------CEEECCC-CEEECC
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-------Ccc-----------------cccccCc-cccccC
Confidence 367899999999999999887 89988753211100000 000 0000000 111235
Q ss_pred CCCeEEEEEccCCCeeEE----EecCCCeEEEEEccCC-----CC--c--eeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 169 EDTVEDVTFCPSSAQEFC----SVGDDSCLILWDARVG-----TS--P--VIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
...|.+++|+|++ ++|+ +++.|+.|++||+++. +. + ....+.+|...|.+++|+|..+.+|++++.
T Consensus 92 ~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 92 KFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp SSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 6789999999999 6677 8899999999998764 11 0 134556789999999999944899999999
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
||.|++||+++ +..+....+|...|.+++|+|+|++ |++|+.||.|++||++. ......... ..
T Consensus 171 Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~~-~~~~~~~~~--------~~ 234 (434)
T 2oit_A 171 DGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTL-QEKKVIPCP--------PF 234 (434)
T ss_dssp TSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTTC-CEEEEECCC--------TT
T ss_pred CCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccCC-cccccccCC--------cc
Confidence 99999999998 6666666778999999999999986 57999999999999982 211110000 00
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
....|...|.+++|++++.++++..+.|. .-.....+++|++..
T Consensus 235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg-~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 235 YESDHPVRVLDVLWIGTYVFAIVYAAADG-TLETSPDVVMALLPK 278 (434)
T ss_dssp CCTTSCEEEEEEEEEETTEEEEEEEETTC-CSSSCCEEEEEECCC
T ss_pred cCCCCceeEEEEEEecCceEEEEEccCCC-ccCCCCceEEEEecc
Confidence 00123448999999998877665443320 011123599999984
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=5.6e-23 Score=187.53 Aligned_cols=235 Identities=8% Similarity=-0.019 Sum_probs=168.1
Q ss_pred CCCcEEEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-
Q 016547 30 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK- 107 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~- 107 (387)
+..+|++++|+| +|+.||+++. ||++.||+++++ . ...+..|....+..+.|+|| +.+++++.
T Consensus 20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g------------~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~ 84 (582)
T 3o4h_A 20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG------------E-TVKLNREPINSVLDPHYGVG-RVILVRDVS 84 (582)
T ss_dssp HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT------------E-EEECCSSCCSEECEECTTCS-EEEEEEECS
T ss_pred hccchheeecCC-CCCeEEEEEccCCceeEEEEcCC------------C-cEeeecccccccccccCCCC-eEEEEeccC
Confidence 356799999999 8889998877 999999998665 2 33445555336889999999 77777664
Q ss_pred --CCeEEEEEcCC--CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 108 --DKSVVLWSIQD--HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 108 --d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
+....+|.+.. ... . ..+.. ...+...+|+|+++.
T Consensus 85 ~g~~~~~l~~~~~~~~g~---------------------------------------~-~~l~~-~~~~~~~~~s~dg~~ 123 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGE---------------------------------------E-QRLEA-VKPMRILSGVDTGEA 123 (582)
T ss_dssp TTSCCEEEEEEETTSTTC---------------------------------------C-EECTT-SCSBEEEEEEECSSC
T ss_pred CCCcceEEEEEeccCCCc---------------------------------------c-ccccC-CCCceeeeeCCCCCe
Confidence 55667776642 100 0 11111 122346688888855
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----CeEEEEEeccCCCCCCCCceEEe
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
.+++.+.++.+.+||+.+++ .. .+..+.. .+++|+| +|+++++++.+ +.|++||+.+ ++. ..+
T Consensus 124 ~~~~s~~~~~~~l~d~~~g~--~~-~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~------g~~-~~l 190 (582)
T 3o4h_A 124 VVFTGATEDRVALYALDGGG--LR-ELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSS------GGL-RVF 190 (582)
T ss_dssp EEEEEECSSCEEEEEEETTE--EE-EEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTT------CCC-EEE
T ss_pred EEEEecCCCCceEEEccCCc--EE-EeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCC------CCc-eEe
Confidence 55554455556699998876 22 2333333 8899999 99999988877 7899999886 444 467
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE--------E
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH--------W 329 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~ 329 (387)
..|...+..++|+|||+.| +++..++ .|++||+..... . .+.+|...+..++ |
T Consensus 191 ~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 191 DSGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRDGSV---------------E-DLELPSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp CCSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTTCCE---------------E-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred ecCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCCCcE---------------E-EccCCCcChhhhhhccccceeE
Confidence 7788899999999999975 4777888 899999987422 2 3456666666677 9
Q ss_pred ccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 330 NASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
+||| .++++++.| |++++|++
T Consensus 254 spdg-~~~~~~~~~-------g~~~l~~~ 274 (582)
T 3o4h_A 254 LPDG-RLAVVARRE-------GRSAVFID 274 (582)
T ss_dssp CTTS-CEEEEEEET-------TEEEEEET
T ss_pred cCCC-cEEEEEEcC-------CcEEEEEE
Confidence 9999 667655544 99999999
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=8e-23 Score=198.35 Aligned_cols=279 Identities=9% Similarity=0.005 Sum_probs=203.0
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.+.+|.+.+.++.|++ + .++++++.||.+.||.++... .....+..|.. +...+|+|+|++|+++
T Consensus 198 ~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~--~~~~~~SpDG~~la~~ 262 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDG-----------KDLRKHTSFTD--YYPRHLNTDGRRILFS 262 (1045)
T ss_dssp EEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTS-----------CSCEECCCCCS--SCEEEEEESSSCEEEE
T ss_pred ECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCC-----------CcceEecCCCC--cceeeEcCCCCEEEEE
Confidence 3468999999999998 5 777888889999999876431 23345555654 4678999999999988
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc-cCCCee
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-PSSAQE 184 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 184 (387)
. ++.|.+|++...... .... ...........|...+.+++|+ |+| ..
T Consensus 263 ~-~~~i~~~d~~~~~l~-~l~~-----------------------------~~~~~~~~~~~~~~~v~~~~~S~pdG-~~ 310 (1045)
T 1k32_A 263 K-GGSIYIFNPDTEKIE-KIEI-----------------------------GDLESPEDRIISIPSKFAEDFSPLDG-DL 310 (1045)
T ss_dssp E-TTEEEEECTTTCCEE-ECCC-----------------------------CCCCBCCSEEEECGGGGEEEEEECGG-GC
T ss_pred e-CCEEEEecCCceEee-eecc-----------------------------CcccccccccccccccceeeecCCCC-CE
Confidence 5 899999998432111 0000 0000001122356678999999 999 66
Q ss_pred EEEecCCCeEEEEEccCCCCceeEEeeccCC-CeeEEEecCCCCCeEEEeeCCCeEE-EEEeccCCCCCCCCceEEeccc
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVR-MFDRRNLTSNGVGSPINKFEGH 262 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~-~~d~~~~~~~~~~~~~~~~~~~ 262 (387)
+++++ ++.|.+|++..++ ...+..|.. .+..++|+ +++.|+.++.++.+. +||+.. ++ ...+..|
T Consensus 311 la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~------~~-~~~l~~~ 377 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT------GK-AEKFEEN 377 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTT------CC-EEECCCC
T ss_pred EEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCC------CC-ceEecCC
Confidence 77766 7899999998765 334556777 88999999 788888888888888 888875 43 3444477
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
...+..++|+|+|++ |++++.++.|++||+.+.. ......+|...+..++|+|+|++++++..+
T Consensus 378 ~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~---------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGK---------------PTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp CCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCC---------------EEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred ccceeeeEECCCCCE-EEEECCCCeEEEEECCCCc---------------eEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 788999999999996 5688889999999998742 233344788899999999999988765432
Q ss_pred C--CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 343 D--CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 343 d--~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+ ...+..++.|++||+. +++ +..+..|...+..++|+|
T Consensus 442 ~~~~~~~~~~~~i~l~d~~------~g~-~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDME------GRK-IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETT------TTE-EEECSCSSSBEEEEEECT
T ss_pred ccccccCCCCCeEEEEECC------CCc-EEEeeCCCcccCCceEcC
Confidence 1 0012345799999998 555 667778888899999987
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.2e-23 Score=192.28 Aligned_cols=280 Identities=10% Similarity=0.005 Sum_probs=176.0
Q ss_pred cEEEEEecCCCCcEEEEecCC---------CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 33 EVNRIRELPQNTKIVATHTDS---------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.|.+++|+| ++++|++++.+ +.|.+||+.+++.. .+....+|.. .+..++|+|||++|+
T Consensus 62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~l~~~~~~~~-~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ----------SLDPPEVSNA-KLQYAGWGPKGQQLI 129 (723)
T ss_dssp TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE----------ECCCTTCCSC-CCSBCCBCSSTTCEE
T ss_pred ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceE----------eccCCccccc-cccccEECCCCCEEE
Confidence 499999999 88999988764 78889999988310 0111123332 367899999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC---------CCCeEE
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH---------EDTVED 174 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~ 174 (387)
.++. +.|.+||+.++......... .. . ..+.++ ...+.+
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~-------~~-----------------------~-~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTG-------KE-----------------------G-VIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCC-------BT-----------------------T-TEEEEECCHHHHHTTSSSSEE
T ss_pred EEEC-CeEEEEECCCCceEEEecCC-------CC-----------------------C-ceECcccceeEEEEeccCcce
Confidence 9885 79999999865332111000 00 0 000011 123478
Q ss_pred EEEccCCCeeEEEecCCC----------------------------------eEEEEEccCCCCceeEEeecc------C
Q 016547 175 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSPVIKVEKAH------D 214 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~------~ 214 (387)
++|+||| +.|++++.++ .|++||+.+++. ...+..+ .
T Consensus 178 ~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 178 HWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMRE 254 (723)
T ss_dssp EEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSS
T ss_pred EEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCcc
Confidence 9999999 6677665432 799999988762 2333332 5
Q ss_pred CCeeEEEecCCCCCeEEEeeC----CCeEEEEEeccCCCCCCCCceEEecc-ccceE----EEEEEcCCCCeeEEE-ecC
Q 016547 215 ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEG-HSAAV----LCVQWSPDKSSVFGS-SAE 284 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~ll~s-~~~ 284 (387)
..+..++|+| +++++++.+. +..|++||+.+ ++....+.. +...+ ..++|+|+|+.|+.. +..
T Consensus 255 ~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 255 YYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp EEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred ceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 6789999999 9998877654 35799999987 665555433 23333 378999999976654 556
Q ss_pred CC------eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547 285 DG------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 357 (387)
Q Consensus 285 d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~ 357 (387)
++ .|.+||+...+.. .....+..+...+.. ++|+|+++.|++++.++ ..+.++||+
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~------------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~l~~ 390 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSN------------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTED-----LPRRRQLYS 390 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSS------------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS-----CTTCCEEEE
T ss_pred cCCCcceeEEEEEeccCCCCc------------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC-----CCcceEEEE
Confidence 77 5666773222210 001112222334444 69999999987644321 127899999
Q ss_pred cCCCcccccchhhhhhhc---cCceEEEeeecC
Q 016547 358 MSDLIYRPQDEVLAELEK---FKAHVISCTSKP 387 (387)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~f~P 387 (387)
++.. .+.....+.. |...+..++|+|
T Consensus 391 ~~~~----~~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 391 ANTV----GNFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp ECSS----TTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred EeCC----CCCCcceecccccCCCCeEEEEECC
Confidence 8731 1112233332 567788888887
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.2e-21 Score=165.77 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=172.8
Q ss_pred ecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--------ceEEEEECCC
Q 016547 28 IIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--------AEFALAMCPT 98 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~v~~~~~~~~ 98 (387)
+.....+..++|+| +++ +++++..++.|.+||..++ +....+..+... .+.++.|+|+
T Consensus 85 ~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 151 (353)
T 3vgz_A 85 IHNDLKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTG------------EVKGRLVLDDRKRTEEVRPLQPRELVADDA 151 (353)
T ss_dssp EEESSCCCSEEEET-TTTEEEEEETTTTEEEEEETTTC------------CEEEEEESCCCCCCSSCCCCEEEEEEEETT
T ss_pred EecCCCcceEEECC-CCCEEEEEecCCCEEEEEeCCCC------------eeEEEEecCCCccccccCCCCCceEEECCC
Confidence 34455688899999 555 6667777899999999988 444555544321 1578999999
Q ss_pred CCEEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 99 EPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 99 ~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
++++++++ .++.|.+||..++... ..+..+...+.+++
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGNIKLK----------------------------------------TAIQNTGKMSTGLA 191 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTTTEEE----------------------------------------EEECCCCTTCCCCE
T ss_pred CCEEEEEecCCCceEEEEcCCCCceE----------------------------------------EEecCCCCccceEE
Confidence 99877765 4789999999764322 23333444578899
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCC
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNG 251 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~ 251 (387)
|+|++ ..+++++.++.|.+||+.+++ ....... +...+..++|+| +++++++++. ++.|.+||..+
T Consensus 192 ~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~----- 262 (353)
T 3vgz_A 192 LDSEG-KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN----- 262 (353)
T ss_dssp EETTT-TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT-----
T ss_pred ECCCC-CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC-----
Confidence 99999 677788889999999998877 3333332 455678899999 8887666655 59999999988
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA 331 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (387)
++.+..+..... ..++|+|++++++++...++.|.+||+.+.. .+..+.. ...+.+++|+|
T Consensus 263 -~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---------------~~~~~~~-~~~~~~~~~s~ 323 (353)
T 3vgz_A 263 -GNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK---------------VVKTFDT-PTHPNSLALSA 323 (353)
T ss_dssp -CCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTE---------------EEEEEEC-CSEEEEEEECT
T ss_pred -CcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCe---------------EEEEEec-CCCCCeEEEcC
Confidence 777777764332 5799999999888888789999999998742 2333332 34679999999
Q ss_pred CCCeEEEEecC
Q 016547 332 SDPWTVVSVSD 342 (387)
Q Consensus 332 ~~~~l~~s~s~ 342 (387)
++++++++...
T Consensus 324 dg~~l~v~~~~ 334 (353)
T 3vgz_A 324 DGKTLYVSVKQ 334 (353)
T ss_dssp TSCEEEEEEEC
T ss_pred CCCEEEEEEcc
Confidence 99988877654
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=2.3e-22 Score=171.56 Aligned_cols=243 Identities=9% Similarity=0.045 Sum_probs=166.7
Q ss_pred EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEE
Q 016547 36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLW 114 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vw 114 (387)
.+++.+ ++.++++++.+++|.+||+.++ +....+..+....+..++|+|+++++ +++..++.|.+|
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCC------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 345666 8889999999999999999988 55555655441125689999999865 455678999999
Q ss_pred EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-C-----CCCeEEEEEccCCCeeEEEe
Q 016547 115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-H-----EDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~ 188 (387)
|+.++.... .+.. + ...+..++|+|++ +.++++
T Consensus 71 d~~t~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~ 109 (349)
T 1jmx_B 71 DLDTCKNTF----------------------------------------HANLSSVPGEVGRSMYSFAISPDG-KEVYAT 109 (349)
T ss_dssp ETTTTEEEE----------------------------------------EEESCCSTTEEEECSSCEEECTTS-SEEEEE
T ss_pred eCCCCcEEE----------------------------------------EEEcccccccccccccceEECCCC-CEEEEE
Confidence 997653221 1111 1 1236789999999 667776
Q ss_pred cCC------------CeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 189 GDD------------SCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 189 ~~d------------g~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+.+ +.|.+||+.+++.. ..... .+...+.+++|+| +++ +++++. .|.+||..+ ++.
T Consensus 110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~ 178 (349)
T 1jmx_B 110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKY 178 (349)
T ss_dssp EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCE
T ss_pred cccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------Cce
Confidence 654 89999999875421 12222 3445689999999 888 555443 499999877 444
Q ss_pred eEEeccc--------------------------------------------------------------------cceEE
Q 016547 256 INKFEGH--------------------------------------------------------------------SAAVL 267 (387)
Q Consensus 256 ~~~~~~~--------------------------------------------------------------------~~~i~ 267 (387)
+..+..+ ...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 258 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcce
Confidence 4333211 12356
Q ss_pred EEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 268 CVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 268 ~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.++|+| ++++++ ++ ++.|.+||+.+.. ....+. ....+.+++|+|+++++++
T Consensus 259 ~~~~sp~dg~~l~-~~--~~~v~~~d~~~~~---------------~~~~~~-~~~~~~~~~~s~dg~~l~~-------- 311 (349)
T 1jmx_B 259 TGLRSPKDPNQIY-GV--LNRLAKYDLKQRK---------------LIKAAN-LDHTYYCVAFDKKGDKLYL-------- 311 (349)
T ss_dssp EEEECSSCTTEEE-EE--ESEEEEEETTTTE---------------EEEEEE-CSSCCCEEEECSSSSCEEE--------
T ss_pred eeEecCCCCCEEE-EE--cCeEEEEECccCe---------------EEEEEc-CCCCccceEECCCCCEEEE--------
Confidence 778889 999755 44 8899999998742 222222 2345789999999998884
Q ss_pred CCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547 347 TGGGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 347 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
++.++.|++||+. +++.+..+...
T Consensus 312 ~~~~~~v~v~d~~------~~~~~~~~~~~ 335 (349)
T 1jmx_B 312 GGTFNDLAVFNPD------TLEKVKNIKLP 335 (349)
T ss_dssp ESBSSEEEEEETT------TTEEEEEEECS
T ss_pred ecCCCeEEEEecc------ccceeeeeecC
Confidence 3445999999998 56666665433
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=6e-22 Score=168.15 Aligned_cols=244 Identities=12% Similarity=0.091 Sum_probs=167.4
Q ss_pred cEEEEEecCCCC-cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC----CCceEEEEECCCCCEEEEec-
Q 016547 33 EVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPTEPYVLSGG- 106 (387)
Q Consensus 33 ~v~~i~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~~~~~~~l~s~~- 106 (387)
.+.+++|+| ++ .+++++..++.|.+||+.++ +....+.... ...+..++|+|+|++|++++
T Consensus 35 ~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 101 (337)
T 1pby_B 35 TPMVPMVAP-GGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp CCCCEEECT-TSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred CccceEEcC-CCCEEEEEeCCCCeEEEEECCCC------------CeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence 588999999 55 55677777899999999887 4444343211 01246899999999998885
Q ss_pred -----------CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 107 -----------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 107 -----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
.++.|.+||+.++... ..+.. ...+.++
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~ 140 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRR----------------------------------------KAFEA-PRQITML 140 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEE----------------------------------------EEEEC-CSSCCCE
T ss_pred ccccccccccccCceEEEEECCCCcEE----------------------------------------EEEeC-CCCccee
Confidence 5799999999754321 12222 3457788
Q ss_pred EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-C-----------------
Q 016547 176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N----------------- 237 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g----------------- 237 (387)
+|+|++ +.++++ ++.|.+||+.+++ ....+..+. ....+.|+| ++..++..+.+ +
T Consensus 141 ~~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
T 1pby_B 141 AWARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQS-WEAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPAD 213 (337)
T ss_dssp EECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTT-TTTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred EECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeeccc-cCCCceeCC-CccEEeeeccCCCceeeeeecccccccccc
Confidence 999999 556666 6889999998876 344443332 112337888 77766554433 2
Q ss_pred ------eEEEEEeccCCCCCCCCce-EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCC
Q 016547 238 ------SVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 310 (387)
Q Consensus 238 ------~i~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 310 (387)
.|.+||+.+ ++.. ..+..+...+.+++|+|++++++ ++ ++.|.+||+....
T Consensus 214 ~~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~~------------- 271 (337)
T 1pby_B 214 PTAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKNA------------- 271 (337)
T ss_dssp GGGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTTE-------------
T ss_pred ccccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCCc-------------
Confidence 468899887 4442 33445666788999999999765 44 7899999998742
Q ss_pred ceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547 311 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
....+. ....+.+++|+|+++++++ ++.|+.|++||+. +++.+..+..+
T Consensus 272 --~~~~~~-~~~~~~~~~~s~dg~~l~~--------~~~~~~i~v~d~~------~~~~~~~~~~~ 320 (337)
T 1pby_B 272 --SIKRVP-LPHSYYSVNVSTDGSTVWL--------GGALGDLAAYDAE------TLEKKGQVDLP 320 (337)
T ss_dssp --EEEEEE-CSSCCCEEEECTTSCEEEE--------ESBSSEEEEEETT------TCCEEEEEECG
T ss_pred --Ccceec-CCCceeeEEECCCCCEEEE--------EcCCCcEEEEECc------CCcEEEEEEcC
Confidence 222222 2346789999999998884 3445999999998 56666655443
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=7.7e-21 Score=163.01 Aligned_cols=254 Identities=12% Similarity=0.067 Sum_probs=165.2
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEecc-CCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE--EEEec
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE-AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--VLSGG 106 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~--l~s~~ 106 (387)
....+..++|+| ++++|++++.+ .|.+|++. ++ +..........+....++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g------------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPT------------EIVHEASHPIGGHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETT------------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCC------------CEEEeeEeecCCCCccEEECCCCCEEEEEEec
Confidence 445788999999 88888888877 99999997 55 2222221111112346899999994 55654
Q ss_pred -------------CCCeEEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCC
Q 016547 107 -------------KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDT 171 (387)
Q Consensus 107 -------------~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (387)
.++++.+|++.. +.... .+..+ ..+...
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~-------------------------------------~~~~~~~~~~~~ 146 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEK-------------------------------------NVQNYEYQENTG 146 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEE-------------------------------------EEEEEECCTTCC
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcc-------------------------------------eEeeEEeCCCCc
Confidence 689999999963 21100 00111 124567
Q ss_pred eEEEEEccCCCeeEEEe-cCCCeEEEEEcc-CCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEecc
Q 016547 172 VEDVTFCPSSAQEFCSV-GDDSCLILWDAR-VGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRN 246 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~ 246 (387)
+.+++|+|+| ++++++ ..++.|.+||+. +++........ .+...+..++|+| +++++++++. ++.|.+|++..
T Consensus 147 ~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 147 IHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence 8999999999 555554 457899999998 56522222222 2456789999999 9988887775 78999998763
Q ss_pred CCCCCCCCce---EEec-------cccc------eEEEEE-EcCCCCeeEEEecCCC-----eEEEEeCCCCCceeccCC
Q 016547 247 LTSNGVGSPI---NKFE-------GHSA------AVLCVQ-WSPDKSSVFGSSAEDG-----LLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 247 ~~~~~~~~~~---~~~~-------~~~~------~i~~~~-~~~~~~~ll~s~~~d~-----~i~vwd~~~~~~~~~~~~ 304 (387)
.. ++.. ..+. +|.. .+..++ |+|+|++|+++...+. .|.+|++...++.
T Consensus 225 ~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----- 295 (365)
T 1jof_A 225 AT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI----- 295 (365)
T ss_dssp TT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----
T ss_pred CC----CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----
Confidence 11 3321 1121 1222 588999 9999998765543333 8999999632221
Q ss_pred CCCCCCceeee-eeccCCCCeeEEEEcc---CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 305 RTTNYPAGLFF-QHAGHRDKVVDFHWNA---SDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 305 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..+. ....+...+..++|+| ++++++++..+ ++.|++|+++
T Consensus 296 -------~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------~~~v~v~~~~ 340 (365)
T 1jof_A 296 -------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------EGWLEIYRWK 340 (365)
T ss_dssp -------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------SCEEEEEEEE
T ss_pred -------EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-------CCeEEEEEEc
Confidence 1111 1233445677899999 89998864333 3899999997
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=6.9e-21 Score=162.36 Aligned_cols=258 Identities=11% Similarity=0.115 Sum_probs=165.9
Q ss_pred CCCcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEecC---CCeEEEEEcCCCcCccccCC
Q 016547 52 DSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDP 127 (387)
Q Consensus 52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~ 127 (387)
.++.|.+|+++.... +... ....+.. ....++|+|+|+ |++++. ++.|.+|++.++..
T Consensus 14 ~~~~i~v~~~d~~tg----------~~~~~~~~~~~~-~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------ 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK----------TLTNDGLLAATQ-NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------ 75 (347)
T ss_dssp SCCEEEEEEEETTTT----------EEEEEEEEEECS-CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------
T ss_pred CCCCEEEEEEcCCCC----------eEEEeeeeeccC-CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------
Confidence 356788888765310 1111 2223333 356899999999 555543 68999999965321
Q ss_pred CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-CCCeEEEEEccC-CCCc
Q 016547 128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARV-GTSP 205 (387)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~ 205 (387)
+.+..+..+...+..++|+|++ +++++++ .++.|.+||+.. +...
T Consensus 76 --------------------------------~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 76 --------------------------------HKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp --------------------------------EEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEE
T ss_pred --------------------------------EEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCee
Confidence 1112233456678899999999 5455554 789999999964 2311
Q ss_pred eeEEeec---------cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc--eEEecc-ccceEEEEEEcC
Q 016547 206 VIKVEKA---------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKFEG-HSAAVLCVQWSP 273 (387)
Q Consensus 206 ~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~-~~~~i~~~~~~~ 273 (387)
....... ....+.+++|+| +++++++...++.|.+||+... ++. +..+.. ....+..++|+|
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~-----g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDA-----GQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTT-----SCEEEEEEEECCTTCCEEEEEECT
T ss_pred ecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCC-----CcEEEeeeEEcCCCCCCceEEECC
Confidence 2222211 122478899999 8887777777899999999831 322 222222 233678899999
Q ss_pred CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC------CCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547 274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH------RDKVVDFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~s~s~d~~tg 347 (387)
+|++++++...++.|.+|++....... ......... ...+..++|+|+|++++++...+
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~---- 261 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAF-----------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY---- 261 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEE-----------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCce-----------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----
Confidence 999888778889999999988521111 111111111 13588999999999988765544
Q ss_pred CCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 348 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 348 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.|.+|++... ...+.+..+..+...+..++|+|
T Consensus 262 ---~~v~v~~~~~~---g~~~~~~~~~~~~~~~~~~~~sp 295 (347)
T 3hfq_A 262 ---NTLAVFAVTAD---GHLTLIQQISTEGDFPRDFDLDP 295 (347)
T ss_dssp ---TEEEEEEECGG---GCEEEEEEEECSSSCCCEEEECT
T ss_pred ---CEEEEEEECCC---CcEEEeEEEecCCCCcCeEEECC
Confidence 89999999721 01234455555666788888887
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=188.37 Aligned_cols=243 Identities=9% Similarity=0.111 Sum_probs=163.4
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--CceEEEEECCCCCEEEEecC-----
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGK----- 107 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~~~~~~~~~~l~s~~~----- 107 (387)
..++|+| ++++++++ .|++|++||+.++ +....+.+|.. ..+.+++|||||++|++++.
T Consensus 19 ~~~~~s~-dg~~~~~~-~d~~i~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 19 FFPNWIS-GQEYLHQS-ADNNIVLYNIETG------------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCCEESS-SSEEEEEC-TTSCEEEEESSSC------------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred CccEECC-CCeEEEEc-CCCCEEEEEcCCC------------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeE
Confidence 3678999 77776665 5999999999998 55555555532 02789999999999998876
Q ss_pred ----CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 108 ----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 108 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
++.|++||+.++..... ..+ ...+..++|+||| +
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~--------------------------------------~~l---~~~~~~~~~SPDG-~ 122 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRG--------------------------------------NEL---PRPIQYLCWSPVG-S 122 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCS--------------------------------------SCC---CSSBCCEEECSST-T
T ss_pred EeecceEEEEEECCCCccccc--------------------------------------eec---CcccccceECCCC-C
Confidence 78999999986532100 001 2457889999999 6
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEeeccCCC-----------------eeEEEecCCCCCeEEEeeCCC---------
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-----------------LHCVDWNPLDDNLILTGSADN--------- 237 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~dg--------- 237 (387)
.|+.+. ++.|++||+.+++...+ ...++... ..+++|+| ++++|++++.|.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEE
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEee
Confidence 677764 78999999988763211 11222221 25899999 999999988652
Q ss_pred -------------------------eEEEEEeccCCCCCCCCce--------EEeccccceEEEEEEcCCCCeeEEEecC
Q 016547 238 -------------------------SVRMFDRRNLTSNGVGSPI--------NKFEGHSAAVLCVQWSPDKSSVFGSSAE 284 (387)
Q Consensus 238 -------------------------~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~ll~s~~~ 284 (387)
.|++||+.+ ++.. ..+.+|...+..++|+||++ ++++...
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~ 272 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLK 272 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEec
Confidence 788999886 4432 12345788899999999976 4555332
Q ss_pred --C--CeEEEEe----CCCCCceeccCCCCCCCCceeee-eeccCCCCee-----EEEEccCCCeEEEEecCCCCCCCCC
Q 016547 285 --D--GLLNIWD----YEKVGKKVEQGPRTTNYPAGLFF-QHAGHRDKVV-----DFHWNASDPWTVVSVSDDCDSTGGG 350 (387)
Q Consensus 285 --d--~~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~-----~~~~~~~~~~l~~s~s~d~~tg~~d 350 (387)
+ ..|.+|| +.++... .+.. ...+|...+. .+.|+|+|+.+++..++. +..
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~g~ 336 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCP------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK----DGY 336 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECC------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT----TSC
T ss_pred cccCeEEEEEEcccCCCCCCceE------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEcc----CCc
Confidence 2 3488888 5543111 0110 0135666666 889999999877644322 123
Q ss_pred ceEEEEecC
Q 016547 351 GTLQIWRMS 359 (387)
Q Consensus 351 g~i~iw~~~ 359 (387)
..|.+|++.
T Consensus 337 ~~l~~~~~~ 345 (719)
T 1z68_A 337 KHIHYIKDT 345 (719)
T ss_dssp EEEEEESSC
T ss_pred eEEEEEECC
Confidence 577778876
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2e-21 Score=188.52 Aligned_cols=277 Identities=10% Similarity=-0.001 Sum_probs=198.4
Q ss_pred CCCcEEEEEec-CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 30 HPGEVNRIREL-PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~-~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
|.+.+.+++|+ | +++.|++++ ++.|.+|++.++ . ...+..|....+..++|+ +|+.|++++.+
T Consensus 294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~------------~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~ 357 (1045)
T 1k32_A 294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGT------------Y-VLKVPEPLRIRYVRRGGD-TKVAFIHGTRE 357 (1045)
T ss_dssp ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSS------------B-EEECSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCC------------c-eEEccCCCcceEEeeeEc-CCCeEEEEECC
Confidence 55679999999 8 888888877 789999998876 2 233455554358899999 99999998888
Q ss_pred CeEE-EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 109 KSVV-LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 109 ~~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
+.+. +|++..+.. ..+..|...+..++|+|++ +.|++
T Consensus 358 ~~l~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~SpDG-~~la~ 395 (1045)
T 1k32_A 358 GDFLGIYDYRTGKA-----------------------------------------EKFEENLGNVFAMGVDRNG-KFAVV 395 (1045)
T ss_dssp EEEEEEEETTTCCE-----------------------------------------EECCCCCCSEEEEEECTTS-SEEEE
T ss_pred CceEEEEECCCCCc-----------------------------------------eEecCCccceeeeEECCCC-CEEEE
Confidence 8888 888764321 2233677889999999999 78999
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC----------eEEEEEeccCCCCCCCCceE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----------SVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----------~i~~~d~~~~~~~~~~~~~~ 257 (387)
++.++.|++||+.+++ .......|...+.+++|+| ++++|++++.++ .|++||+.+ ++ +.
T Consensus 396 ~~~~~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------g~-~~ 465 (1045)
T 1k32_A 396 ANDRFEIMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RK-IF 465 (1045)
T ss_dssp EETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TE-EE
T ss_pred ECCCCeEEEEECCCCc--eEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCC------Cc-EE
Confidence 9999999999999887 4455557888999999999 999998887754 899999986 55 67
Q ss_pred EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC--------C--------------------CCCCC
Q 016547 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--------P--------------------RTTNY 309 (387)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--------~--------------------~~~~~ 309 (387)
.+..|...+..++|+|+|++|+ .++.++...+|+........... . .....
T Consensus 466 ~l~~~~~~~~~~~~spdG~~l~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 544 (1045)
T 1k32_A 466 AATTENSHDYAPAFDADSKNLY-YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 544 (1045)
T ss_dssp ECSCSSSBEEEEEECTTSCEEE-EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred EeeCCCcccCCceEcCCCCEEE-EEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence 7777888899999999999754 67777777788765322100000 0 00000
Q ss_pred CceeeeeeccCCCCeeEEEEccCCCeEEEEec-------CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEE
Q 016547 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS-------DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS 382 (387)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s-------~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 382 (387)
....+..+..|.+.+..++++|++..+++... .. +.+.+..|.+||+. +++. ..+. ..+.+
T Consensus 545 ~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~--~~~~~~~l~~~d~~------~~~~-~~l~---~~v~~ 612 (1045)
T 1k32_A 545 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ--GAPEKGVLLKYDVK------TRKV-TEVK---NNLTD 612 (1045)
T ss_dssp GGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH--CCCCCEEEEEEETT------TCCE-EEEE---EEEEE
T ss_pred HhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccc--ccCCCceEEEEECC------CCcE-EEee---cCcce
Confidence 01123344557788999999999976664110 00 12345788888888 3432 2222 66788
Q ss_pred eeecC
Q 016547 383 CTSKP 387 (387)
Q Consensus 383 ~~f~P 387 (387)
++|||
T Consensus 613 ~~~S~ 617 (1045)
T 1k32_A 613 LRLSA 617 (1045)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88887
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.7e-21 Score=164.08 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=172.8
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-ceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~ 122 (387)
++|++++.++.|.+||+.++ +....+...... .+..++|+|+++++ +++..++.|.+||+.++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred cEEEEcCCCCeEEEEECCCC------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence 57899999999999999887 445555433211 25689999999865 55667899999999765322
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-C----CCCCeEEEEEccCCCeeEEEec--------
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G----HEDTVEDVTFCPSSAQEFCSVG-------- 189 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~~l~~~~-------- 189 (387)
. .+. . +...+.+++|+|++ +.++++.
T Consensus 70 ~----------------------------------------~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 70 G----------------------------------------RIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELT 108 (337)
T ss_dssp E----------------------------------------EEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSS
T ss_pred e----------------------------------------eEEcCCcccccccccceEECCCC-CEEEEEecccccccc
Confidence 1 111 1 12256789999998 5666664
Q ss_pred ----CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 190 ----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 190 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
.++.|.+||+.+++ ....+. ....+..++|+| ++++++++ ++.|.+||+.+ ++.+..+..+...
T Consensus 109 ~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~------~~~~~~~~~~~~~ 176 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEA------GTLVEDKPIQSWE 176 (337)
T ss_dssp CEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTT------TEEEEEECSTTTT
T ss_pred cccccCceEEEEECCCCc--EEEEEe-CCCCcceeEECC-CCCEEEEe--CCeEEEEECCC------CcEeeeeeccccC
Confidence 57999999998766 334443 355688999999 89888887 68899999988 6666666543310
Q ss_pred EEEEEEcCCCCeeEEEecCCC-----------------------eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDG-----------------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD 322 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
..+.|+|++..+++++..++ .|.+||+...... ...+..+..
T Consensus 177 -~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~ 241 (337)
T 1pby_B 177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--------------MREVRIMDV 241 (337)
T ss_dssp -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--------------EEEEEECSS
T ss_pred -CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--------------EeecCCCCC
Confidence 13378999987765554444 3688998874221 223345666
Q ss_pred CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
.+.+++|+|++++++++ ++.|++||+. +++.+..+.. ...+.+++|+|
T Consensus 242 ~~~~~~~s~dg~~l~~~----------~~~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~ 289 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA----------YNVLESFDLE------KNASIKRVPL-PHSYYSVNVST 289 (337)
T ss_dssp CEEEEEECTTSSEEEEE----------ESEEEEEETT------TTEEEEEEEC-SSCCCEEEECT
T ss_pred ceeeEEECCCCCEEEEe----------CCeEEEEECC------CCcCcceecC-CCceeeEEECC
Confidence 78899999999988853 3899999998 5666555543 34567788876
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=3.1e-19 Score=152.98 Aligned_cols=268 Identities=10% Similarity=0.047 Sum_probs=164.9
Q ss_pred cEEEEe----cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC----CeEEEEEc
Q 016547 45 KIVATH----TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD----KSVVLWSI 116 (387)
Q Consensus 45 ~~l~t~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~ 116 (387)
.++..| +.++.|.+|+++..... ....... +.. ....++|+|+|++|++++.+ +.|.+|++
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~--------~~~~~~~--~~~-~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~ 82 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGE--------SLPLSDA--EVA-NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF 82 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCC--------EEEEEEE--ECS-CCCSEEECTTSSEEEEEECCSSTTCEEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCC--------EEEeecc--cCC-CCceEEECCCCCEEEEEEccCCCCCcEEEEEE
Confidence 345555 34678999987643100 0112222 433 45789999999999998875 79999998
Q ss_pred CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEE
Q 016547 117 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 196 (387)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 196 (387)
+.... ....+.....+......+++ ++..++++...++.|.+
T Consensus 83 ~~~~g------------------------------------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 83 DKEKG------------------------------------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ETTTT------------------------------------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred eCCCC------------------------------------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 74210 00111222334455677777 66445555557899999
Q ss_pred EEccCCCCc-eeEE---eec--------cCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCC----C-c---
Q 016547 197 WDARVGTSP-VIKV---EKA--------HDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVG----S-P--- 255 (387)
Q Consensus 197 wd~~~~~~~-~~~~---~~~--------~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~----~-~--- 255 (387)
|++...... .... ..+ +...+.+++|+| +++++++++ .++.|.+|++.... + + .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~----~~~~~~~l~~~ 199 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNA----NADNKEKFLTK 199 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTC----CTTTCCCCEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCC----Ccccccceeec
Confidence 999754311 1111 111 123457899999 888666555 48999999998632 1 1 1
Q ss_pred ---eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 256 ---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 256 ---~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
......+...+..++|+|+|++++++...++.|.+||+........ ..+.....+......++|+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~----------~~~~~~~~~~~~~~~i~~spd 269 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI----------QTVAADTVNAQGSGDIHLSPD 269 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE----------EEEESCSSCCCCEEEEEECTT
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe----------EEEecCCCCCCCcccEEECCC
Confidence 1112234456789999999998776776799999999985321100 112222334456789999999
Q ss_pred CCeEEEEecCCCCCCCCCceEEEEecCCCcccccch--hhhhhhccCceEEEeeecC
Q 016547 333 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE--VLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~v~~~~f~P 387 (387)
+++++++... .++.|.+|+++.. +++ .+..+.. ...+.+++|+|
T Consensus 270 g~~l~v~~~~------~~~~i~v~~~~~~----~g~~~~~~~~~~-g~~~~~~~~sp 315 (361)
T 3scy_A 270 GKYLYASNRL------KADGVAIFKVDET----NGTLTKVGYQLT-GIHPRNFIITP 315 (361)
T ss_dssp SSEEEEEECS------SSCEEEEEEECTT----TCCEEEEEEEEC-SSCCCEEEECT
T ss_pred CCEEEEECCC------CCCEEEEEEEcCC----CCcEEEeeEecC-CCCCceEEECC
Confidence 9998875543 0389999999621 222 3333333 45677788876
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=9.3e-20 Score=170.66 Aligned_cols=254 Identities=9% Similarity=0.122 Sum_probs=166.8
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC----ceEEEEECCCCCEEEEec
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----AEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----~v~~~~~~~~~~~l~s~~ 106 (387)
......++|+| ++++++++ ||+|++||+.++ +....+.+|... ....+.|||||++|+.++
T Consensus 16 ~~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~ 80 (740)
T 4a5s_A 16 RLKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYG------------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (740)
T ss_dssp CCCCCCEEECS-SSEEEEEE--TTEEEEEETTTC------------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred cccccccEECC-CCcEEEEc--CCcEEEEECCCC------------ceEEEEechhhhhhcccccceEECCCCCEEEEEE
Confidence 34567899999 88899886 899999999998 455556666532 123488999999999988
Q ss_pred CC---------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 107 KD---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 107 ~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
.+ +.+.+||+.++.. ..+..|...+...+|
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~ 119 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTW 119 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEE
T ss_pred CCeeeEEEccceEEEEEECCCCcE-----------------------------------------EEcccCCCcceeeEE
Confidence 76 5667999986532 223456678999999
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCC-----------------eeEEEecCCCCCeEEEeeCCC---
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-----------------LHCVDWNPLDDNLILTGSADN--- 237 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~dg--- 237 (387)
+||| +.|+.+ .++.|++||+.+++... ....++... ...+.|+| +++.|+.++.|.
T Consensus 120 SPdG-~~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v 195 (740)
T 4a5s_A 120 SPVG-HKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEV 195 (740)
T ss_dssp CSST-TCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTC
T ss_pred CCCC-CEEEEE-ECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCC
Confidence 9999 667666 46899999998876221 112222222 23589999 999999876432
Q ss_pred ---------------------------------eEEEEEecc---CCCCCCCCceEEec------cccceEEEEEEcCCC
Q 016547 238 ---------------------------------SVRMFDRRN---LTSNGVGSPINKFE------GHSAAVLCVQWSPDK 275 (387)
Q Consensus 238 ---------------------------------~i~~~d~~~---~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~ 275 (387)
.|++||+.+ .. ......+. +|...+..++|+|||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 355566553 21 00233343 277789999999999
Q ss_pred CeeEEEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee-----EEEEccCCCeEEEEecCCCCCC
Q 016547 276 SSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV-----DFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 276 ~~ll~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~s~s~d~~tg 347 (387)
+.++... +.+..|.+||+.++...... .. .......+|...|. ..+|+|||+.++...+++ .
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~------~~-~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~--~- 341 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNC------LV-ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE--E- 341 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEE------CG-GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT--T-
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccce------eE-EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC--C-
Confidence 8543332 23447999999875310000 00 00001134555544 789999999887555543 2
Q ss_pred CCCceEEEEecC
Q 016547 348 GGGGTLQIWRMS 359 (387)
Q Consensus 348 ~~dg~i~iw~~~ 359 (387)
....|++|++.
T Consensus 342 -G~~~l~~~~~~ 352 (740)
T 4a5s_A 342 -GYRHICYFQID 352 (740)
T ss_dssp -SCEEEEEEETT
T ss_pred -CceEEEEEECC
Confidence 24688888887
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=5.9e-20 Score=159.10 Aligned_cols=277 Identities=13% Similarity=0.111 Sum_probs=171.3
Q ss_pred eeecCCCcEEE-----EEecCCCCcEEEEecC-CC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 26 KTIIHPGEVNR-----IRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 26 ~~~~h~~~v~~-----i~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
++..|.+.... .+|+| +++.|+.++. +| .|.+||+.++ +......++.. .+....|+|
T Consensus 25 ~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g------------~~~~lt~~~~~-~~~~~~~sp 90 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQ------------VATQLTEGRGD-NTFGGFLSP 90 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTC------------EEEECCCSSCB-CSSSCEECT
T ss_pred EecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCC------------ceEEeeeCCCC-CccceEEcC
Confidence 34456666666 78999 8888877776 67 4888888877 33334444443 344678999
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE-
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT- 176 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 176 (387)
||+.|+.++.++.|.+||+.++... ..+..+...+....
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~----------------------------------------~~~~~~~~~~~~~~~ 130 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEEN----------------------------------------VVYQVPAEWVGYGTW 130 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE----------------------------------------EEEECCTTEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcce----------------------------------------eeeechhhcccccce
Confidence 9999999999999999999864321 22333344443333
Q ss_pred -EccCCCeeEEE----------------------ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547 177 -FCPSSAQEFCS----------------------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 233 (387)
Q Consensus 177 -~~~~~~~~l~~----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (387)
++|++ .+++. ...+..|.+||+.+++ ...+..+...+..++|+|.+++.|+..
T Consensus 131 ~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~ 206 (388)
T 3pe7_A 131 VANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFC 206 (388)
T ss_dssp EECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred eECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEE
Confidence 47887 55542 2345789999999887 344445667789999999556777766
Q ss_pred eCC------CeEEEEEeccCCCCCCCCceEEecccc--ceEEEEEEcCCCCeeEEEecCCC----eEEEEeCCCCCceec
Q 016547 234 SAD------NSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVE 301 (387)
Q Consensus 234 ~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ll~s~~~d~----~i~vwd~~~~~~~~~ 301 (387)
..+ ..|.++|... .....+..+. ..+..++|+|+|+.|+..+..++ .|++||+......
T Consensus 207 ~~~~~~~~~~~l~~~d~~~-------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-- 277 (388)
T 3pe7_A 207 HEGPHDLVDARMWLINEDG-------TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-- 277 (388)
T ss_dssp ECSCTTTSSCSEEEEETTS-------CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE--
T ss_pred EecCCCCCcceEEEEeCCC-------CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE--
Confidence 653 2677777654 3334444343 36788999999997644443222 3999999875321
Q ss_pred cCCCCCCCCceeeeeeccCCC---CeeEEEEccCCCeEEEEecCCC-CCCCCCceEEEEecCCCcccccchhhhhhhccC
Q 016547 302 QGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWTVVSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 377 (387)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~s~s~d~-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 377 (387)
.+..+.++.. ....++|+|+|+.++++..+.. .+...+..|++||+. +++. ..+..+.
T Consensus 278 -----------~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~------~~~~-~~l~~~~ 339 (388)
T 3pe7_A 278 -----------QLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK------NGTQ-HRVARHD 339 (388)
T ss_dssp -----------EEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT------TTEE-EEEEECC
T ss_pred -----------EEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc------CCce-EEecccc
Confidence 1222222110 1223479999998886543210 011456799999998 3432 4444454
Q ss_pred c-----------eEEEeeecC
Q 016547 378 A-----------HVISCTSKP 387 (387)
Q Consensus 378 ~-----------~v~~~~f~P 387 (387)
. .+..++|+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~sp 360 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTP 360 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECT
T ss_pred CcccccccccccCCCCccCCC
Confidence 4 466677776
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=4.9e-18 Score=143.29 Aligned_cols=250 Identities=13% Similarity=0.129 Sum_probs=173.5
Q ss_pred CCcEEEEEecCCCCcEEEEecCC------------------------CcEEEEeccCCCCcccccCCCCCCCeEEEeccC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDS------------------------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ 86 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~ 86 (387)
-+.+.++++.| +++++++...+ ++|.+||..++ +....+....
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~~ 89 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------EILQSSGKNL 89 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------CEEEEECTTT
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------eEEeccCCCc
Confidence 57799999999 78888888777 47999998877 3333333222
Q ss_pred CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCc-CccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee
Q 016547 87 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY 165 (387)
Q Consensus 87 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (387)
-.....++++++|+++++...++.|++||..... ......... ....-
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-------------------------------~~g~~ 138 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-------------------------------QPGSD 138 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-------------------------------BCCCS
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-------------------------------CCCCC
Confidence 1246799999999988888889999999976431 111000000 00000
Q ss_pred cCCCCCeEEEEEcc-CCCeeEEEec-CCCeEEEEEccCCCCceeEEeecc----------CCCeeEEEecCCC-CCeEEE
Q 016547 166 NGHEDTVEDVTFCP-SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPLD-DNLILT 232 (387)
Q Consensus 166 ~~~~~~v~~~~~~~-~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~-~~~l~~ 232 (387)
..+......++++| ++ .++++.+ .++.|++||. .++ ....+... -..+..++++| + +.++++
T Consensus 139 ~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~ 213 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVA 213 (329)
T ss_dssp TTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEE
T ss_pred ccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEE
Confidence 23445688999999 55 7788876 6899999994 444 34433222 23488999999 6 788888
Q ss_pred eeCCCeEEEEEeccCCCCCCCCceEEec--cccceEEEEEEcC------CCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547 233 GSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSP------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304 (387)
Q Consensus 233 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~------~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~ 304 (387)
...++.|++||..+ ++.+..+. .+...+..++|+| ++. ++++...+..|++||+....
T Consensus 214 d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~------- 279 (329)
T 3fvz_A 214 DRENGRIQCFKTDT------KEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGE------- 279 (329)
T ss_dssp ETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCC-------
T ss_pred ECCCCEEEEEECCC------CcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCe-------
Confidence 88899999999987 77777773 4566788999999 333 22233445689999988752
Q ss_pred CCCCCCceeeeee---ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 305 RTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 305 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+..+ .++...+.+++++|+| .++++.. .+++|++|++.
T Consensus 280 --------~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~-------~~~~I~~~~~~ 321 (329)
T 3fvz_A 280 --------IIDVFKPVRKHFDMPHDIVASEDG-TVYIGDA-------HTNTVWKFTLT 321 (329)
T ss_dssp --------EEEEECCSSSCCSSEEEEEECTTS-EEEEEES-------SSCCEEEEEEE
T ss_pred --------EEEEEcCCCCccCCeeEEEECCCC-CEEEEEC-------CCCEEEEEeCC
Confidence 23333 3566778999999999 6666544 44899999987
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=173.93 Aligned_cols=280 Identities=14% Similarity=0.099 Sum_probs=173.8
Q ss_pred cEEEEEecCCCCcEEEEecC---------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 33 EVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
.|.+++|+| ++++|++++. ++.|++||+++++.... ..+ .. .+..++|+|||++|+
T Consensus 61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----------~~l---~~-~~~~~~~SPDG~~la 125 (719)
T 1z68_A 61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----------NEL---PR-PIQYLCWSPVGSKLA 125 (719)
T ss_dssp TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----------SCC---CS-SBCCEEECSSTTCEE
T ss_pred ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc----------eec---Cc-ccccceECCCCCEEE
Confidence 389999999 8899988876 78999999998832100 011 12 467899999999999
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC---------eEE
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT---------VED 174 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~ 174 (387)
.+. |+.|++|++.++........ ......+.++... ..+
T Consensus 126 ~~~-~~~i~~~~~~~g~~~~l~~~-------------------------------~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 126 YVY-QNNIYLKQRPGDPPFQITFN-------------------------------GRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp EEE-TTEEEEESSTTSCCEECCCC-------------------------------CBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred EEE-CCeEEEEeCCCCCcEEEecC-------------------------------CCcCCeEcccccceeeeecccCccc
Confidence 986 78999999976543211000 0000122233322 258
Q ss_pred EEEccCCCeeEEEecCCC----------------------------------eEEEEEccCCCCc---ee---EEeeccC
Q 016547 175 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSP---VI---KVEKAHD 214 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~~---~~~~~~~ 214 (387)
++|+||| +.|++++.|. .|++||+.+++.. .+ ..+..|.
T Consensus 174 ~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 174 LWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 9999999 6777766442 7889999876521 00 1123577
Q ss_pred CCeeEEEecCCCCCeEEEeeCC----CeEEEEE----eccCCCCCCCCceEEe----ccccceEE-----EEEEcCCCCe
Q 016547 215 ADLHCVDWNPLDDNLILTGSAD----NSVRMFD----RRNLTSNGVGSPINKF----EGHSAAVL-----CVQWSPDKSS 277 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d----~~~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~ 277 (387)
..+..++|+| +++++++.... ..|.+|| ..+ ++....+ ..|...+. .++|+|+|+.
T Consensus 253 ~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 253 YYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT------WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp EEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS------EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred ceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC------CceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 7899999999 78777764432 2488888 555 4433333 35666665 7899999996
Q ss_pred eEE-EecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547 278 VFG-SSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ 354 (387)
Q Consensus 278 ll~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~ 354 (387)
++. +...+| .|.+||+.... ...+..+...+..+.++ +++.+++++... ...++..+
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~~----------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~---~~~~~~~~ 385 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVEN----------------AIQITSGKWEAINIFRV-TQDSLFYSSNEF---EEYPGRRN 385 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCSTT----------------CEECSCSSSCEEEEEEE-CSSEEEEEESCG---GGCTTCBE
T ss_pred EEEEEEccCCceEEEEEECCCCc----------------eEecccCceEEEEEEEE-eCCEEEEEEecC---CCCCceEE
Confidence 544 344555 46666765531 12234455567777777 888888765430 01247889
Q ss_pred EEecCCCcccccchhhh-hhhccCceEEEeeecC
Q 016547 355 IWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP 387 (387)
Q Consensus 355 iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~f~P 387 (387)
+|.+.........+.+. .+.+|...+..+.|+|
T Consensus 386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred EEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 99876210000002221 1333666677777775
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.8e-17 Score=137.11 Aligned_cols=237 Identities=12% Similarity=0.128 Sum_probs=166.2
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe------ccCCCceEEEEE-CCCCCE
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAM-CPTEPY 101 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~-~~~~~~ 101 (387)
+|-..+.++++.+ +++++++...++.|.+||.+.. ....+. ++.. .+..+++ .++++.
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~-------------~~~~~~~~~~~~~~~~-~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCc-------------EEEEecccCCCccccc-CceEEEEEcCCCeE
Confidence 3456789999998 7888888888999999998733 222232 2223 4679999 567776
Q ss_pred EEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEcc
Q 016547 102 VLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP 179 (387)
Q Consensus 102 l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 179 (387)
+++... ++.|.+||.. +... ..+ ..+...+.++++.|
T Consensus 92 ~v~~~~~~~~i~~~d~~-g~~~----------------------------------------~~~~~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 92 IVTERSPTHQIQIYNQY-GQFV----------------------------------------RKFGATILQHPRGVTVDN 130 (286)
T ss_dssp EEEECGGGCEEEEECTT-SCEE----------------------------------------EEECTTTCSCEEEEEECT
T ss_pred EEEcCCCCCEEEEECCC-CcEE----------------------------------------EEecCccCCCceEEEEeC
Confidence 666643 7899999943 2211 111 12345688999999
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
++ +++++...++.|.+||... + ....+. .+...+..++++| +++++++...++.|++||.. ++.+.
T Consensus 131 ~g-~l~v~~~~~~~i~~~~~~g-~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~ 198 (286)
T 1q7f_A 131 KG-RIIVVECKVMRVIIFDQNG-N--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLR 198 (286)
T ss_dssp TS-CEEEEETTTTEEEEECTTS-C--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEE
T ss_pred CC-CEEEEECCCCEEEEEcCCC-C--EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEE
Confidence 98 7888888889999999653 3 233332 3445789999999 88888888889999999975 55666
Q ss_pred Eeccc--cceEEEEEEcCCCCeeEEEecCCC-eEEEEeCCCCCceeccCCCCCCCCceeeeeeccC--CCCeeEEEEccC
Q 016547 258 KFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNAS 332 (387)
Q Consensus 258 ~~~~~--~~~i~~~~~~~~~~~ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~ 332 (387)
.+..+ ...+..++++++|. ++++...++ .|.+||.... .+..+..+ ...+.+++++|+
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~----------------~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ----------------LISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC----------------EEEEEEESSCCSCEEEEEEETT
T ss_pred EEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCC----------------EEEEEcccCCCCcceeEEECCC
Confidence 66543 25688999999997 566776675 9999996431 12222222 234789999999
Q ss_pred CCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 333 DPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+. ++++ +.|++|++|++.
T Consensus 262 g~-l~vs--------~~~~~v~v~~~~ 279 (286)
T 1q7f_A 262 GS-VVLA--------SKDYRLYIYRYV 279 (286)
T ss_dssp TE-EEEE--------ETTTEEEEEECS
T ss_pred Cc-EEEE--------CCCCeEEEEEcc
Confidence 86 4443 235899999987
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=2.1e-18 Score=159.85 Aligned_cols=264 Identities=11% Similarity=0.045 Sum_probs=172.2
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEe--cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceE---------EEE
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATH--TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF---------ALA 94 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~---------~~~ 94 (387)
...+|...+..+++++ +.-++++. +.++...||....+ .....+..|.. .+. ...
T Consensus 18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~l~~~~~-~~~~~~~~~~~~~~~ 83 (662)
T 3azo_A 18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRAD------------GAEESALPAPW-NVRNRVFEYSGFPWA 83 (662)
T ss_dssp HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTT------------SCEEESSCTTC-CBCCCGGGTCCCCEE
T ss_pred HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCC------------CCcceeCCCCc-cccccccccCCccce
Confidence 4457999999999998 66677776 56889999997443 22334444443 233 455
Q ss_pred EC--CCCCE-EEEecC-CCeEEEEEcC--C-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 95 MC--PTEPY-VLSGGK-DKSVVLWSIQ--D-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 95 ~~--~~~~~-l~s~~~-d~~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
|+ |||++ |+.++. +..|.++++. . +. ...+..
T Consensus 84 ~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-----------------------------------------~~~l~~ 122 (662)
T 3azo_A 84 GVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-----------------------------------------PRPLTP 122 (662)
T ss_dssp EECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-----------------------------------------CEECSC
T ss_pred eeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-----------------------------------------CEeccC
Confidence 55 99998 776553 4556666554 1 11 022222
Q ss_pred -----CCCCeEEEEEccCCCeeEEEecCC----------CeEEEEEccC------CCCceeEEee-ccCCCeeEEEecCC
Q 016547 168 -----HEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARV------GTSPVIKVEK-AHDADLHCVDWNPL 225 (387)
Q Consensus 168 -----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~-~~~~~i~~~~~~~~ 225 (387)
|...+..++|+||| +.|+.++.+ ..|++||+.+ ++ ...+. .+...+..++|+|
T Consensus 123 ~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp- 197 (662)
T 3azo_A 123 VSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP- 197 (662)
T ss_dssp CCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-
T ss_pred CccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-
Confidence 56678899999999 667776665 5899999987 44 23444 5556788899999
Q ss_pred CCCeEEEeeCC--------CeEEEEEec-cCCCCCCC---CceEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEE
Q 016547 226 DDNLILTGSAD--------NSVRMFDRR-NLTSNGVG---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIW 291 (387)
Q Consensus 226 ~~~~l~~~~~d--------g~i~~~d~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vw 291 (387)
++++|+.++.+ ..|.+||+. + + +.......+...+..++|+|||+ +++++..++ .|.+|
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~------g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTED------GRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRV 270 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTT------SCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCC------CcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEE
Confidence 99999988755 379999998 4 4 33333344568899999999999 677888888 56666
Q ss_pred eCCCCCceeccCCCCCCCCceeeeeeccCCC--------CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547 292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 363 (387)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~ 363 (387)
|+....... ....+.. .+..++|+|++..++ ++.. +.++||.++..
T Consensus 271 ~~~~~~~~~---------------l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~--------~~~~-~~~~l~~~d~~-- 324 (662)
T 3azo_A 271 DPATGAATQ---------------LCRREEEFAGPLWTPGMRWFAPLANGLIAV--------VHGK-GAAVLGILDPE-- 324 (662)
T ss_dssp CTTTCCEEE---------------SSCCSSBSSCCCCSTTCCSEEECTTSCEEE--------EEBS-SSCEEEEEETT--
T ss_pred ECCCCceee---------------cccccccccCccccccCceEeEeCCCEEEE--------EEEc-CccEEEEEECC--
Confidence 654432111 0111111 156788999887665 4445 78888854410
Q ss_pred cccchhhhhhhccCceEEEe-ee
Q 016547 364 RPQDEVLAELEKFKAHVISC-TS 385 (387)
Q Consensus 364 ~~~~~~~~~~~~~~~~v~~~-~f 385 (387)
.++ +..+..|...+..+ ++
T Consensus 325 --~~~-~~~l~~~~~~~~~~~s~ 344 (662)
T 3azo_A 325 --SGE-LVDAAGPWTEWAATLTV 344 (662)
T ss_dssp --TTE-EEECCSSCCEEEEEEEE
T ss_pred --CCc-EEEecCCCCeEEEEEec
Confidence 233 56666677777666 44
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=5.1e-18 Score=145.47 Aligned_cols=212 Identities=7% Similarity=0.032 Sum_probs=137.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcC-CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQ-DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
.+..++|+|+|++|++++.+ .|.+|++. ++..... .....
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~--------------------------------------~~~~~ 81 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE--------------------------------------ASHPI 81 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE--------------------------------------EEEEC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe--------------------------------------eEeec
Confidence 35789999999999998887 99999986 4321100 00111
Q ss_pred CCCCeEEEEEccCCCe-eEEEec-------------CCCeEEEEEccC-CCCceeEEee----ccCCCeeEEEecCCCCC
Q 016547 168 HEDTVEDVTFCPSSAQ-EFCSVG-------------DDSCLILWDARV-GTSPVIKVEK----AHDADLHCVDWNPLDDN 228 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~-~l~~~~-------------~dg~i~iwd~~~-~~~~~~~~~~----~~~~~i~~~~~~~~~~~ 228 (387)
+ +....++|+|++.. +++++. .+|.+.+|++.. ++ ...... .+...+.+++|+| +++
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~sp-dG~ 157 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDP-TET 157 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECC-CCC
Confidence 1 22456889999932 345553 689999999974 44 222222 2456789999999 998
Q ss_pred eEEEeeC-CCeEEEEEec-cCCCCCCCCc--eEEec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC-Cceec
Q 016547 229 LILTGSA-DNSVRMFDRR-NLTSNGVGSP--INKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVE 301 (387)
Q Consensus 229 ~l~~~~~-dg~i~~~d~~-~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~ 301 (387)
++++++. ++.|++||+. + ++. +..+. .|...+..++|+|+|++++++...++.|.+|++... ++...
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp EEEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 8887764 6899999998 4 443 23333 235678999999999987666666889999987631 11100
Q ss_pred cCCCCCCCCceeeeee----ccCCC------CeeEEE-EccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 302 QGPRTTNYPAGLFFQH----AGHRD------KVVDFH-WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 302 ~~~~~~~~~~~~~~~~----~~~~~------~v~~~~-~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
. ...+..+ .+|.. .+..++ |+|+|++|+++...+ -....++|.+|+++
T Consensus 232 ~--------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~--~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 232 T--------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN--KFELQGYIAGFKLR 290 (365)
T ss_dssp E--------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES--STTSCCEEEEEEEC
T ss_pred c--------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC--CCCCCCeEEEEEEC
Confidence 0 0001111 12232 588999 999999887654322 01112399999996
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=7.8e-19 Score=160.21 Aligned_cols=235 Identities=11% Similarity=0.031 Sum_probs=161.2
Q ss_pred eeecCC-CcEEEEEecCCCCcEEEEecC---CCcEEEEeccC--CCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 26 KTIIHP-GEVNRIRELPQNTKIVATHTD---SPDVLIWDVEA--QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 26 ~~~~h~-~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
++..|. ..+..++|+| + +++++++. +....+|.+.. . .....+..... +...+|+|+|
T Consensus 58 ~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~------------g~~~~l~~~~~--~~~~~~s~dg 121 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRP------------GEEQRLEAVKP--MRILSGVDTG 121 (582)
T ss_dssp ECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTST------------TCCEECTTSCS--BEEEEEEECS
T ss_pred eeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCC------------CccccccCCCC--ceeeeeCCCC
Confidence 334555 6899999998 6 78887765 55667776654 2 11113333332 3466888887
Q ss_pred C--EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 100 P--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 100 ~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
+ .+++++.+ .+.+||+.++.. ..+..+.. .+++|
T Consensus 122 ~~~~~~s~~~~-~~~l~d~~~g~~-----------------------------------------~~l~~~~~--~~~~~ 157 (582)
T 3o4h_A 122 EAVVFTGATED-RVALYALDGGGL-----------------------------------------RELARLPG--FGFVS 157 (582)
T ss_dssp SCEEEEEECSS-CEEEEEEETTEE-----------------------------------------EEEEEESS--CEEEE
T ss_pred CeEEEEecCCC-CceEEEccCCcE-----------------------------------------EEeecCCC--ceEEE
Confidence 6 34455544 455999976432 11122222 78999
Q ss_pred ccCCCeeEEEecCC----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC--eEEEEEeccCCCCC
Q 016547 178 CPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNG 251 (387)
Q Consensus 178 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~ 251 (387)
+||| +.+++++.+ +.|++||+.+++ ...+..|...+..++|+| +++.|+++..++ .|++||+.+
T Consensus 158 spDG-~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~----- 227 (582)
T 3o4h_A 158 DIRG-DLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD----- 227 (582)
T ss_dssp EEET-TEEEEEEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT-----
T ss_pred CCCC-CEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC-----
Confidence 9999 778877666 789999998887 345667888899999999 999999888888 899999987
Q ss_pred CCCceEEeccccceEEEEE--------EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 252 VGSPINKFEGHSAAVLCVQ--------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~--------~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
++.. .+..|...+..++ |+||| .++++++.|+.+++|++ + +. .. ...+.
T Consensus 228 -~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g-~~--------------~~---~~~~~ 284 (582)
T 3o4h_A 228 -GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--G-ER--------------VE---APQGN 284 (582)
T ss_dssp -CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--T-EE--------------EC---CCSSE
T ss_pred -CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--C-Ce--------------ec---cCCCc
Confidence 6655 6666766666666 99999 57889999999999999 2 21 11 22357
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.+++|+ ++..++ +++.+ ..-..+.+|+..
T Consensus 285 v~~~~~s-dg~~l~-~~s~~----~~p~~l~~~d~~ 314 (582)
T 3o4h_A 285 HGRVVLW-RGKLVT-SHTSL----STPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEE-TTEEEE-EEEET----TEEEEEEEETTC
T ss_pred eEEEEec-CCEEEE-EEcCC----CCCCeEEEEcCC
Confidence 8899999 776654 43322 122456666655
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=1e-17 Score=142.95 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=172.2
Q ss_pred EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-----CCceEEEEECCCCC
Q 016547 36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEP 100 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~~~~~~ 100 (387)
.++|+| ++++|++++ .++.|.+||..+. +....+.... +.....++++|+|+
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------------~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKL------------TFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------------CEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCC------------cEEEEEEcCccccccCCCcceEEECCCCC
Confidence 899999 788777765 3678999999887 4444444221 11235899999999
Q ss_pred EEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee-ecCCCCCeEEEEE
Q 016547 101 YVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTF 177 (387)
Q Consensus 101 ~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~ 177 (387)
+|+++.. +++|.+||+.+.+.. .. +.. .....+.+
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~----------------------------------------~~~i~~--~~~~~v~~ 158 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYV----------------------------------------EDVTAA--AGCWSVIP 158 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEE----------------------------------------EEEGGG--TTEEEEEE
T ss_pred EEEEECCCCCCeEEEEECCCCcEE----------------------------------------EEEecC--CCcceeEE
Confidence 9998864 689999999865321 11 111 12233567
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeE------EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIK------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
.|++...+++.+.||.+.+|+...... ... .+.....+ ..+.+.+ ++..++..+.++.|.++|+....
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~--- 232 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGK-VASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDE--- 232 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSS-EEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSS---
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCc-EeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCC---
Confidence 787666788888999999999865321 221 11111222 2334456 66777777889999999987521
Q ss_pred CCCceEEecc------cc----ceEEEEEEcCCCCeeEEEec----------CCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547 252 VGSPINKFEG------HS----AAVLCVQWSPDKSSVFGSSA----------EDGLLNIWDYEKVGKKVEQGPRTTNYPA 311 (387)
Q Consensus 252 ~~~~~~~~~~------~~----~~i~~~~~~~~~~~ll~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 311 (387)
...+..+.. +. .....++|+|+++.++++.. ..+.|.+||+.+.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------------- 296 (361)
T 2oiz_A 233 -VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------------- 296 (361)
T ss_dssp -CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------------
T ss_pred -ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------------
Confidence 111122110 00 11113789999888876654 1358999999875
Q ss_pred eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc--hhhhhhhccCceEEEeeecC
Q 016547 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~v~~~~f~P 387 (387)
+.+..+..+. +.+++|+|+|++|++ ++. ++|.+||.. ++ +.+.++..+...-..++|+|
T Consensus 297 ~~v~~i~~~~--p~~ia~spdg~~l~v--------~n~-~~v~v~D~~------t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 297 QRVARIPGRD--ALSMTIDQQRNLMLT--------LDG-GNVNVYDIS------QPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EEEEEEECTT--CCEEEEETTTTEEEE--------ECS-SCEEEEECS------SSSCEEEEEETTSCSSEEEEEECC
T ss_pred cEEEEEecCC--eeEEEECCCCCEEEE--------eCC-CeEEEEECC------CCcceeeEEeccCCCCcEEEEecC
Confidence 3455666665 899999999998874 223 899999999 78 88888777777888889887
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=7.7e-18 Score=145.76 Aligned_cols=242 Identities=9% Similarity=0.032 Sum_probs=155.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE--ECCCCCEEEE--
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA--MCPTEPYVLS-- 104 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~--~~~~~~~l~s-- 104 (387)
+|...+...+|+| +++.|+.++.++.|++||+.++ +....+..+.. .+.... +++++++++.
T Consensus 78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g------------~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~ 143 (388)
T 3pe7_A 78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATL------------EENVVYQVPAE-WVGYGTWVANSDCTKLVGIE 143 (388)
T ss_dssp SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECCTT-EEEEEEEEECTTSSEEEEEE
T ss_pred CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCC------------cceeeeechhh-cccccceeECCCCCeecccc
Confidence 3445555678999 8889999998999999999988 44444554543 343333 4899998874
Q ss_pred --------------------ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547 105 --------------------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 105 --------------------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (387)
...+..|.+||+.++.. ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------------~~ 182 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----------------------------------------TV 182 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----------------------------------------EE
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEECCCCce-----------------------------------------EE
Confidence 23456788888875421 33
Q ss_pred ecCCCCCeEEEEEcc-CCCeeEEEecC------CCeEEEEEccCCCCceeEEeeccC--CCeeEEEecCCCCCeEEEeeC
Q 016547 165 YNGHEDTVEDVTFCP-SSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~-~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~ 235 (387)
+..+...+..+.|+| ++ ..++.... ...|.++|....+ ...+..+. ..+..++|+| +++.|+..+.
T Consensus 183 l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~ 257 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVP-DGSALVYVSY 257 (388)
T ss_dssp EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECC-CCCEEEEEec
Confidence 334556789999999 88 66665544 3378888877655 23333333 2577889999 8887765443
Q ss_pred -CC----eEEEEEeccCCCCCCCC--ceEEeccccce---EEEEEEcCCCCeeEEEe--------cCCCeEEEEeCCCCC
Q 016547 236 -DN----SVRMFDRRNLTSNGVGS--PINKFEGHSAA---VLCVQWSPDKSSVFGSS--------AEDGLLNIWDYEKVG 297 (387)
Q Consensus 236 -dg----~i~~~d~~~~~~~~~~~--~~~~~~~~~~~---i~~~~~~~~~~~ll~s~--------~~d~~i~vwd~~~~~ 297 (387)
++ .|.+||+.+ ++ .+..+.++... ...++|+|+|+.|+++. ..+..|++||+....
T Consensus 258 ~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 258 LKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 22 399999987 44 33333331111 11237999999766443 456789999998742
Q ss_pred ceeccCCCCCCCCceeeeeeccCCC-----------CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 298 KKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...+..+.. .+..++|+|+|++++.++..+ |...||.++
T Consensus 332 ----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------g~~~l~~~~ 381 (388)
T 3pe7_A 332 ----------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------GKPALYLAT 381 (388)
T ss_dssp ----------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred ----------------eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC-------CceeEEEEE
Confidence 122333333 578899999999888755433 666666654
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=1.6e-17 Score=140.58 Aligned_cols=268 Identities=9% Similarity=0.050 Sum_probs=171.6
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
..|.+++|++ +...++..+.++.++.|. . .....+..+.. .+.+++|+++|++++++..++.|
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~i 68 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTIT---A------------EPWLEISKKGL-QLEGLNFDRQGQLFLLDVFEGNI 68 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---C------------EEEEEEESSCC-CEEEEEECTTSCEEEEETTTCEE
T ss_pred cccceeeecC-CccceeEEeecccCcccc---c------------ceeEEEeccCc-cccCcEECCCCCEEEEECCCCEE
Confidence 4477888888 666677767788899992 2 23445555554 46899999999988888889999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
.+||.+++... .....+...+.+++++|++ +++++...+
T Consensus 69 ~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~dg-~l~v~~~~~ 107 (333)
T 2dg1_A 69 FKINPETKEIK----------------------------------------RPFVSHKANPAAIKIHKDG-RLFVCYLGD 107 (333)
T ss_dssp EEECTTTCCEE----------------------------------------EEEECSSSSEEEEEECTTS-CEEEEECTT
T ss_pred EEEeCCCCcEE----------------------------------------EEeeCCCCCcceEEECCCC-cEEEEeCCC
Confidence 99998754221 1112345679999999998 677776666
Q ss_pred ----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC------CCeEEEEEeccCCCCCCCCceEEecc
Q 016547 192 ----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTSNGVGSPINKFEG 261 (387)
Q Consensus 192 ----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~ 261 (387)
+.|.+||..++..........+...+..++++| +++++++... .+.|..+|... ++ +..+..
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~ 179 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF------RT-VTPIIQ 179 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS------CC-EEEEEE
T ss_pred CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC------CE-EEEeec
Confidence 689999988776221111112445789999999 8887776653 24555555443 22 233322
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
....+..++|+|+++.++++.+.++.|.+||+...+..... ........+.++ ..+..+++++++..++ +.
T Consensus 180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~------~~~~~~~~~~~~-~~~~~i~~d~~G~l~v-~~- 250 (333)
T 2dg1_A 180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGATIPYYFTGH-EGPDSCCIDSDDNLYV-AM- 250 (333)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEEEEEEECCSS-SEEEEEEEBTTCCEEE-EE-
T ss_pred CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc------ccceEEEecCCC-CCCCceEECCCCCEEE-EE-
Confidence 33457899999999877777777889999998642211100 000011112222 4678899999987555 22
Q ss_pred CCCCCCCCCceEEEEecCCCcccccchhhhhhhccC------ceEEEeeecC
Q 016547 342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK------AHVISCTSKP 387 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------~~v~~~~f~P 387 (387)
..++.|.+||.. ++.+..+..+. ..+.+++|+|
T Consensus 251 ------~~~~~v~~~d~~-------g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 251 ------YGQGRVLVFNKR-------GYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp ------ETTTEEEEECTT-------SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred ------cCCCEEEEECCC-------CCEEEEEEcCCCccccccCcceEEECC
Confidence 234799999875 23333333222 2567777764
No 170
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=5.1e-17 Score=138.42 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=136.8
Q ss_pred cEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-----CCceEEEEECCCCCEEEEec
Q 016547 33 EVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 33 ~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~~~~~~~l~s~~ 106 (387)
.+..++|+| +++ +++++..++.|.+||+.++ +....+..+. ...+..++|+|+|++|++++
T Consensus 44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTC------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp SSCEEEECT-TSSEEEEEETTTTEEEEEETTTT------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CCceeEECC-CCCEEEEEeCCCCcEEEEeCCCC------------cEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence 678999999 655 5567677899999999887 3444443222 11357899999999999888
Q ss_pred CC------------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE
Q 016547 107 KD------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 174 (387)
Q Consensus 107 ~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 174 (387)
.+ +.|.+||+.++.... .+..+. +...+.+
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-------------------------------------~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAK-------------------------------------PVRTFP-MPRQVYL 152 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBC-------------------------------------CSEEEE-CCSSCCC
T ss_pred ccccccccccccCCCeEEEEECCCccccc-------------------------------------eeeecc-CCCcccc
Confidence 65 899999997642211 111222 2335788
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-----------------------------------------
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----------------------------------------- 213 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------------------------- 213 (387)
++|+|++ + +++++. .|.+||+.+++ ....+..+
T Consensus 153 ~~~s~dg-~-l~~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 153 MRAADDG-S-LYVAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp EEECTTS-C-EEEESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred eeECCCC-c-EEEccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 9999999 5 444443 49999998776 22222211
Q ss_pred ---------------------------CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 214 ---------------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 214 ---------------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
...+..++++|.++++++++ ++.|.+||+.+ ++.+..+.. ...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~-~~~~ 297 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLIKAANL-DHTY 297 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEEEEEEC-SSCC
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEEEEEcC-CCCc
Confidence 11344566667456677777 88999999988 777666653 3456
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.+++|+|++++|+ +++.++.|.+||+.+.
T Consensus 298 ~~~~~s~dg~~l~-~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 298 YCVAFDKKGDKLY-LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp CEEEECSSSSCEE-EESBSSEEEEEETTTT
T ss_pred cceEECCCCCEEE-EecCCCeEEEEecccc
Confidence 7999999999766 4677899999999874
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=3.5e-15 Score=126.20 Aligned_cols=252 Identities=10% Similarity=0.046 Sum_probs=163.9
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
....+...+.+++|.+ ++++++++..++.|.+||.+++ +.......+.. .+.+++++++|+++++.
T Consensus 39 ~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~-~~~~i~~~~dg~l~v~~ 104 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCY 104 (333)
T ss_dssp EEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEE
T ss_pred EEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCC------------cEEEEeeCCCC-CcceEEECCCCcEEEEe
Confidence 3445667789999998 7888888888999999999877 33333323444 58999999999988877
Q ss_pred cCC----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547 106 GKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 181 (387)
Q Consensus 106 ~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (387)
..+ +.|.+||.++....... ....+...+.++++.|++
T Consensus 105 ~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 105 LGDFKSTGGIFAATENGDNLQDII--------------------------------------EDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp CTTSSSCCEEEEECTTSCSCEEEE--------------------------------------CSSSSCCCEEEEEECTTS
T ss_pred CCCCCCCceEEEEeCCCCEEEEEE--------------------------------------ccCccCCcccceEECCCC
Confidence 666 68999998754321000 001123568899999998
Q ss_pred CeeEEEecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCC
Q 016547 182 AQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 182 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~ 254 (387)
+++++... .+.|..+|...++ . ..+......+..++|+| +++.+ ++.+.++.|.+||.... +.
T Consensus 147 -~l~v~~~~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~-----g~ 216 (333)
T 2dg1_A 147 -GFYFTDFRGYSTNPLGGVYYVSPDFRT--V-TPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD-----GV 216 (333)
T ss_dssp -CEEEEECCCBTTBCCEEEEEECTTSCC--E-EEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT-----SS
T ss_pred -CEEEEeccccccCCCceEEEEeCCCCE--E-EEeecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCC-----Cc
Confidence 66666543 3556666665544 2 22223334578999999 88755 44456789999999641 22
Q ss_pred ceEE--------eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc------C
Q 016547 255 PINK--------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------H 320 (387)
Q Consensus 255 ~~~~--------~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 320 (387)
.+.. +.++ ..+..++++++|. ++++...++.|.+||... .. +..+.. |
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g-~~---------------~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG-YP---------------IGQILIPGRDEGH 278 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS-CE---------------EEEEECTTGGGTC
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC-CE---------------EEEEEcCCCcccc
Confidence 2211 1222 4678899999998 565666688999999843 11 222222 2
Q ss_pred CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...+.+++|+|+++.|+++.+.. .....+.|...++.
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~g--~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSNDI--EMGGGSMLYTVNGF 315 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEECG--GGTCCEEEEEEECS
T ss_pred ccCcceEEECCCCCEEEEEeCcc--CCCCCceEEEEecc
Confidence 23689999999988887766542 11223455555544
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=1.6e-16 Score=148.09 Aligned_cols=250 Identities=7% Similarity=-0.073 Sum_probs=167.0
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCC-----cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
|...+..++|+| ++++||.+..++ +|++||+.++ +.......+. .+..++|+|||+.|+.
T Consensus 123 ~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg------------~~~~~~~~~~--~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGA------------KELPDVLERV--KFSCMAWTHDGKGMFY 187 (710)
T ss_dssp SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTT------------EEEEEEEEEE--CSCCEEECTTSSEEEE
T ss_pred CCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCC------------CCCcccccCc--ccceEEEEeCCCEEEE
Confidence 445688999999 888888765533 8999999988 3332222222 1457999999999998
Q ss_pred ecCCCe----------------EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 105 GGKDKS----------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 105 ~~~d~~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
++.++. |.+|++.++.... ..+.....|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~~v~~~~~~ 231 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED------------------------------------ILCAEFPDE 231 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC------------------------------------EEEECCTTC
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccc------------------------------------eEEeccCCC
Confidence 887765 8888886543110 000111224
Q ss_pred CCCeEEEEEccCCCeeEEEecC-----CCeEEEEEccC------CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD- 236 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d- 236 (387)
...+..+.|+|+| ++++..+. +..|.+||+.+ +.. ....+..+...+.. .|+| +++.|+..+.+
T Consensus 232 ~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~ 307 (710)
T 2xdw_A 232 PKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRH 307 (710)
T ss_dssp TTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECTT
T ss_pred CeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECCC
Confidence 5567899999999 55554433 57899999986 421 13444455555554 4788 77777766553
Q ss_pred ---CeEEEEEeccCCCCCCCC--ceEEeccccc--eEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCC
Q 016547 237 ---NSVRMFDRRNLTSNGVGS--PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTT 307 (387)
Q Consensus 237 ---g~i~~~d~~~~~~~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~ 307 (387)
+.|.+||+.+ +. ....+..|.. .+..++|++++. ++++...|+. |.+||+..+.
T Consensus 308 ~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~---------- 370 (710)
T 2xdw_A 308 SPNYRLINIDFTD------PEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGA---------- 370 (710)
T ss_dssp CTTCEEEEEETTS------CCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCC----------
T ss_pred CCCCEEEEEeCCC------CCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCC----------
Confidence 3699999876 32 2344444443 688899986555 6778888885 5556664431
Q ss_pred CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
....+..+.+.+..++++|+++.++++.+ +....++|++||+..
T Consensus 371 -----~~~~l~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 371 -----LLKIFPLEVGSVVGYSGQKKDTEIFYQFT----SFLSPGIIYHCDLTK 414 (710)
T ss_dssp -----EEEEECCCSSEEEEEECCTTCSEEEEEEE----CSSCCCEEEEEETTS
T ss_pred -----EEEecCCCCceEEEEecCCCCCEEEEEEe----CCCCCCEEEEEECCC
Confidence 23334556778899999999988887776 556778999999973
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=2.2e-17 Score=153.12 Aligned_cols=240 Identities=10% Similarity=0.057 Sum_probs=148.3
Q ss_pred eeecCCCcEE---------EEEec--CCCCcE-EEEec-CCCcEEEEecc--C-CCCcccccCCCCCCCeEEEec-----
Q 016547 26 KTIIHPGEVN---------RIREL--PQNTKI-VATHT-DSPDVLIWDVE--A-QPNRHAVLGATNSRPDLILTG----- 84 (387)
Q Consensus 26 ~~~~h~~~v~---------~i~~~--~~~~~~-l~t~~-~dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~----- 84 (387)
++..|...+. ...|+ | +++. |+.++ .+..|.+|++. + + . ...+..
T Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~------------~-~~~l~~~~~~~ 127 (662)
T 3azo_A 62 SALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGA------------V-PRPLTPVSAVG 127 (662)
T ss_dssp ESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCC------------C-CEECSCCCCST
T ss_pred eeCCCCccccccccccCCccceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCC------------C-CEeccCCccCC
Confidence 4445666665 56566 7 6666 55544 46677777776 3 3 1 122333
Q ss_pred cCCCceEEEEECCCCCEEEEecCC----------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCC
Q 016547 85 HQDNAEFALAMCPTEPYVLSGGKD----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 154 (387)
Q Consensus 85 h~~~~v~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (387)
|.. .+..++|+|||+.|++++.| ..|.+||+.+....
T Consensus 128 ~~~-~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------------------- 174 (662)
T 3azo_A 128 GGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA-------------------------------- 174 (662)
T ss_dssp TCE-EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--------------------------------
T ss_pred CCc-cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--------------------------------
Confidence 333 57899999999999988876 58999998751000
Q ss_pred CCCCCCCceeec-CCCCCeEEEEEccCCCeeEEEecCC--------CeEEEEEcc-CCCC-ceeEEeeccCCCeeEEEec
Q 016547 155 DGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWN 223 (387)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~i~~~~~~ 223 (387)
.......+. .+...+..++|+||| +.|+.++.+ ..|.+||+. ++.. ........+...+..+.|+
T Consensus 175 ---~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 175 ---DRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp ---CGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred ---cCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 000012223 444677889999999 666665533 479999998 4521 1233334456789999999
Q ss_pred CCCCCeEEEeeCCC--eEEEEEeccCCCCCCCCceEEeccccce--------EEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547 224 PLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGLLNIWDY 293 (387)
Q Consensus 224 ~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~ll~s~~~d~~i~vwd~ 293 (387)
| +++++++++.++ .|.+||..+ ++.......+... +..++|+|+++ +++++.. +.++||.+
T Consensus 251 p-dg~l~~~~~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 251 P-DGSLIVATDRTGWWNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGIL 321 (662)
T ss_dssp T-TSCEEEEECTTSSCEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEE
T ss_pred C-CCeEEEEECCCCCeEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEE
Confidence 9 888888888888 455555543 3333222222221 46788999988 5668877 99999955
Q ss_pred CCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 294 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
..... ....+..|...+..+ |+++++.+++++
T Consensus 322 d~~~~--------------~~~~l~~~~~~~~~~-~s~~~~~~~~~~ 353 (662)
T 3azo_A 322 DPESG--------------ELVDAAGPWTEWAAT-LTVSGTRAVGVA 353 (662)
T ss_dssp ETTTT--------------EEEECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred ECCCC--------------cEEEecCCCCeEEEE-EecCCCEEEEEE
Confidence 43211 134445666667666 255566665544
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.8e-17 Score=155.15 Aligned_cols=199 Identities=12% Similarity=0.184 Sum_probs=133.3
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
..++.|+|+|++++++ |++|++||+.++... ..+.+|.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------------------------------------~~~~~~~ 56 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------------------------------------VFLENST 56 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------------------------------------EEECTTT
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceE----------------------------------------EEEechh
Confidence 4589999999999886 899999999876432 2222332
Q ss_pred -----CCeEEEEEccCCCeeEEEecCC---------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 170 -----DTVEDVTFCPSSAQEFCSVGDD---------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 170 -----~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
.....+.|+||| +.++.++.+ +.+.+||+.+++ ...+..+...+...+|+| +++.||.+ .
T Consensus 57 ~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SP-dG~~la~~-~ 130 (740)
T 4a5s_A 57 FDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-W 130 (740)
T ss_dssp TTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-E
T ss_pred hhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECC-CCCEEEEE-E
Confidence 123458899999 677777665 567799999887 334556778899999999 99999888 5
Q ss_pred CCeEEEEEeccCCCCCCCCceEE-eccccceE-----------------EEEEEcCCCCeeEEEecCCCeEEE-------
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINK-FEGHSAAV-----------------LCVQWSPDKSSVFGSSAEDGLLNI------- 290 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i-----------------~~~~~~~~~~~ll~s~~~d~~i~v------- 290 (387)
++.|++||+.+ +...+. ..++...+ ..+.|||||++|+....+++.+.+
T Consensus 131 ~~~i~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 131 NNDIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp TTEEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred CCeEEEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 78999999886 443221 12222222 348999999975433333333444
Q ss_pred ----------------------------EeCCC---CCceeccCCCCCCCCceeeeeec------cCCCCeeEEEEccCC
Q 016547 291 ----------------------------WDYEK---VGKKVEQGPRTTNYPAGLFFQHA------GHRDKVVDFHWNASD 333 (387)
Q Consensus 291 ----------------------------wd~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~ 333 (387)
||+.. .... ....+. +|...+..++|+||+
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-------------TSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-------------CEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-------------eEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 44443 2100 011111 367789999999999
Q ss_pred CeEEEEecCCCCCCCCCceEEEEecC
Q 016547 334 PWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 334 ~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.++.... .++.+..|++||+.
T Consensus 272 ~~~~~~~~----r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 272 RISLQWLR----RIQNYSVMDICDYD 293 (740)
T ss_dssp EEEEEEEE----SSTTEEEEEEEEEE
T ss_pred eEEEEEeC----CCCCEEEEEEEECC
Confidence 85554433 34456789999998
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=2.5e-15 Score=126.75 Aligned_cols=251 Identities=8% Similarity=0.018 Sum_probs=163.0
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-C
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G 167 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 167 (387)
.+.+++++|+|+++++...++.+.+++.+..... .... ..+ ...+.+..++..+.+.+..+. .
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~------------~~~~~i~~~d~~~g~~~~~~~~~ 88 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY---QQRG-LGP------------IEEDTILVIDPNNAEILQSSGKN 88 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCB---SCGG-GCS------------CCSCCEEEECTTTCCEEEEECTT
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceee---cccc-ccc------------ccCCcEEEEECCCCeEEeccCCC
Confidence 5889999999999988887754333222111000 0000 000 011122222222222222222 3
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe---------eccCCCeeEEEecCCCCCeEEEee-CCC
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGS-ADN 237 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~l~~~~-~dg 237 (387)
+......+++.|++ +++++...++.|++||...... .+..+ ..+...+..++++|.++.++++.+ .++
T Consensus 89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 44578899999998 6888888899999999865421 12222 234456889999984567777765 689
Q ss_pred eEEEEEeccCCCCCCCCceEEecccc----------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGHS----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 307 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 307 (387)
.|++||.. +..+..+.... .....++++|++..++++...++.|++||..++.
T Consensus 167 ~I~~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~---------- 229 (329)
T 3fvz_A 167 RIVQFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE---------- 229 (329)
T ss_dssp EEEEECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----------
T ss_pred eEEEEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----------
Confidence 99999943 66666664322 3388999999955578888899999999998532
Q ss_pred CCCceeeeee--ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh---hccCceEEE
Q 016547 308 NYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---EKFKAHVIS 382 (387)
Q Consensus 308 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~v~~ 382 (387)
.+..+ ..+...+..++|+| ..++++.+...++...++.|++|++. +++.+..+ .++.....+
T Consensus 230 -----~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~------~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 230 -----FVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFS------SGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp -----EEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETT------TCCEEEEECCSSSCCSSEEE
T ss_pred -----EEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcC------CCeEEEEEcCCCCccCCeeE
Confidence 22222 34566788999999 45555555554466777899999998 67777766 356677888
Q ss_pred eeecC
Q 016547 383 CTSKP 387 (387)
Q Consensus 383 ~~f~P 387 (387)
++|+|
T Consensus 297 ia~~~ 301 (329)
T 3fvz_A 297 IVASE 301 (329)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88876
No 176
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=9.8e-16 Score=125.55 Aligned_cols=238 Identities=7% Similarity=-0.035 Sum_probs=160.2
Q ss_pred cEEEEEecCCCCcEEE-EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 33 EVNRIRELPQNTKIVA-THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
...++++.+ ++++++ +...++.|.+||..+.. .......+.. .+.+++++++|+.+++.. ++.|
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~-~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTG------------TTVLPFNGLY-QPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----------------EECCCCSCC-SCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcc------------cceEeeCCcC-CcceeEECCCCCEEEEcC-CCEE
Confidence 778999998 777777 55778899999976552 1111111212 357899999999766666 8899
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 191 (387)
.+||........ ........+.++++.+++ +++++...+
T Consensus 90 ~~~d~~~~~~~~----------------------------------------~~~~~~~~p~~i~~~~~g-~l~v~~~~~ 128 (270)
T 1rwi_B 90 VTLAAGSNNQTV----------------------------------------LPFDGLNYPEGLAVDTQG-AVYVADRGN 128 (270)
T ss_dssp EEECTTCSCCEE----------------------------------------CCCCSCSSEEEEEECTTC-CEEEEEGGG
T ss_pred EEEeCCCceEee----------------------------------------eecCCcCCCcceEECCCC-CEEEEECCC
Confidence 999976432110 001122467899999998 677777778
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 271 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (387)
+.|.+|+..+.. ...........+..+++++ +++++++...++.|.+||... .........+...+.++++
T Consensus 129 ~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~~ 199 (270)
T 1rwi_B 129 NRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIAV 199 (270)
T ss_dssp TEEEEECTTCCS--CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEEE
T ss_pred CEEEEEECCCce--eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEEE
Confidence 899999765544 2222223334678999999 888777777788999999875 3332222223356889999
Q ss_pred cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547 272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 351 (387)
Q Consensus 272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg 351 (387)
+++|. ++++...++.|.+||....... .....+...+.+++++++|. ++++.+. ++
T Consensus 200 d~~g~-l~v~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~-l~v~~~~-------~~ 255 (270)
T 1rwi_B 200 DEAGT-VYVTEHNTNQVVKLLAGSTTST---------------VLPFTGLNTPLAVAVDSDRT-VYVADRG-------ND 255 (270)
T ss_dssp CTTCC-EEEEETTTSCEEEECTTCSCCE---------------ECCCCSCSCEEEEEECTTCC-EEEEEGG-------GT
T ss_pred CCCCC-EEEEECCCCcEEEEcCCCCcce---------------eeccCCCCCceeEEECCCCC-EEEEECC-------CC
Confidence 99995 6777777889999998653111 11122335789999999987 5554443 49
Q ss_pred eEEEEecC
Q 016547 352 TLQIWRMS 359 (387)
Q Consensus 352 ~i~iw~~~ 359 (387)
.|+++++.
T Consensus 256 ~v~~~~~~ 263 (270)
T 1rwi_B 256 RVVKLTSL 263 (270)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99999998
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=2.7e-15 Score=124.62 Aligned_cols=231 Identities=9% Similarity=0.059 Sum_probs=158.8
Q ss_pred eeecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 26 KTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
....+.....+++|.| +++ +++++..++.|..||..++ ...+..+.. .+.+++++++|+++++
T Consensus 22 ~l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~-~~~~l~~~~dg~l~v~ 85 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--------------LSPEMHPSH-HQNGHCLNKQGHLIAC 85 (296)
T ss_dssp EEECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--------------EEEEESSCS-SEEEEEECTTCCEEEE
T ss_pred EEecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--------------eEEEECCCC-CcceeeECCCCcEEEE
Confidence 3335667788999999 665 8889999999999998764 233444444 5789999999998888
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCe
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 183 (387)
...++.|.+||..++....... ... .....+..+++.|+| +
T Consensus 86 ~~~~~~i~~~d~~~g~~~~~~~-------------------------------------~~~~~~~~~~~~i~~d~~G-~ 127 (296)
T 3e5z_A 86 SHGLRRLERQREPGGEWESIAD-------------------------------------SFEGKKLNSPNDVCLAPDG-S 127 (296)
T ss_dssp ETTTTEEEEECSTTCCEEEEEC-------------------------------------EETTEECCCCCCEEECTTS-C
T ss_pred ecCCCeEEEEcCCCCcEEEEee-------------------------------------ccCCCCCCCCCCEEECCCC-C
Confidence 7778899999986543211000 000 112346789999998 7
Q ss_pred eEEE----ec-------------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 184 EFCS----VG-------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 184 ~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
++++ ++ ..+.|..++.. ++ ......+......++|+| +++.+++.+.++.|.+||+..
T Consensus 128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECS
T ss_pred EEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECC
Confidence 7776 32 13456666654 33 334445666789999999 898887777789999999972
Q ss_pred CCCCCCCCc---eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547 247 LTSNGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 323 (387)
Q Consensus 247 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
. +.. ...+..+...+.+++++++|+ ++++. ++.|.+||... ..+..+..+..
T Consensus 203 ~-----g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g----------------~~~~~~~~~~~- 257 (296)
T 3e5z_A 203 R-----GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG----------------DELGRVLTPQT- 257 (296)
T ss_dssp S-----SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS----------------CEEEEEECSSC-
T ss_pred C-----CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC----------------CEEEEEECCCC-
Confidence 1 332 223333455667899999998 45454 78899999863 23444555666
Q ss_pred eeEEEE-ccCCCeEEEEe
Q 016547 324 VVDFHW-NASDPWTVVSV 340 (387)
Q Consensus 324 v~~~~~-~~~~~~l~~s~ 340 (387)
+++++| .|+++.|.++.
T Consensus 258 ~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 258 TSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp CCEEEEESTTSCEEEEEE
T ss_pred ceeEEEECCCCCEEEEEc
Confidence 899999 58888888643
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=2.5e-17 Score=142.96 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=152.7
Q ss_pred EEEEEecCCCCcEEEEecC-C--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 34 VNRIRELPQNTKIVATHTD-S--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
+.+++|+| ++++|+.... + ..|.+||+.++ +.. .+..+.......+.|+|||++|+.++.++.
T Consensus 38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~------------~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (396)
T 3c5m_A 38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQ------------QAV-QLTEGKGDNTFGGFISTDERAFFYVKNELN 103 (396)
T ss_dssp TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTT------------EEE-ECCCSSCBCTTTCEECTTSSEEEEEETTTE
T ss_pred eecCcCCC-CCCEEEEEEecCCCceEEEEECCCC------------cEE-EeecCCCCccccceECCCCCEEEEEEcCCc
Confidence 77889999 7777766543 2 36888898876 222 222222222334789999999999998999
Q ss_pred EEEEEcCCCcCccccCCCcccCCC-----------------------CCCceeccC---CCCCCCCCCCCCCCCCCCcee
Q 016547 111 VVLWSIQDHITSSATDPATAKSAG-----------------------SSGSIIKQS---PKPGDGNDKAADGPSVGPRGI 164 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 164 (387)
|.+||+.++............... ..+..+... .......+..++....+....
T Consensus 104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 999999876432211100000000 000000000 001222333444444433332
Q ss_pred ecCCCCCeEEEEEcc-CCCeeEEEecCC------CeEEEEEccCCCCceeEEeecc--CCCeeEEEecCCCCCeEEEeeC
Q 016547 165 YNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--DADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 165 ~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
..+...+..+.|+| ++ ..++..+.+ ..|.+||+..++ ...+..+ ...+..++|+| +++.|+.++.
T Consensus 184 -~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~ 257 (396)
T 3c5m_A 184 -HQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIP-DGSAMAYVSY 257 (396)
T ss_dssp -EEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred -ccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECC-CCCEEEEEec
Confidence 34566789999999 66 545544333 468888887655 2222222 23578899999 8988777765
Q ss_pred C-----CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC-CCCeeEEEec---------------CCCeEEEEeCC
Q 016547 236 D-----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSA---------------EDGLLNIWDYE 294 (387)
Q Consensus 236 d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~---------------~d~~i~vwd~~ 294 (387)
+ +.|++||+.+ ++...... ... .. +.|+| +|+.++.+++ .+..|.+||+.
T Consensus 258 ~~~~~~~~l~~~d~~~------g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 258 FKGQTDRVIYKANPET------LENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp ETTTCCEEEEEECTTT------CCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CCCCccceEEEEECCC------CCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 4 4599999986 44322221 112 23 89999 9996543221 34789999987
Q ss_pred CCCceeccCCCCCCCCceeeeeeccCCC-----------CeeEEEEccCCCeEEEEec
Q 016547 295 KVGKKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~s~s 341 (387)
.... ..+..+.. .+..++|+|++++++.+..
T Consensus 329 ~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 329 AKSA----------------QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp TTBC----------------CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cCce----------------EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 6421 11222322 2567899999998876543
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=2.1e-16 Score=146.96 Aligned_cols=250 Identities=9% Similarity=-0.079 Sum_probs=163.5
Q ss_pred cCCCcEEEEEecCCCCcEEE-----EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547 29 IHPGEVNRIRELPQNTKIVA-----THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~-----t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
+|...+..++|+| ++++|| .|+.+.+|++||+.+++... ...+.... ...++|+|||+.|+
T Consensus 118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----------~~~~~~~~---~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----------VDVIEGGK---YATPKWTPDSKGFY 183 (695)
T ss_dssp SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS----------SCCBSCCT---TCCCEECTTSSEEE
T ss_pred CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC----------CcccCccc---ccceEEecCCCEEE
Confidence 3556799999999 888888 45556789999999984210 00111111 15789999999999
Q ss_pred EecCCCe-------------EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 104 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 104 s~~~d~~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
.++.|.. |++|++.++.... ..+.....+..
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~ 227 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPT 227 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTT
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCE
Confidence 9888766 9999987643110 01112233556
Q ss_pred CeEEEEEccCCCeeEEEecCCC----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEE
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFD 243 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d 243 (387)
.+..+.|+|+| ++++..+.++ .|.+||..+++ ...+..+...+....+ + ++.+++.+. .++.|.+||
T Consensus 228 ~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 228 TFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp CEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEB
T ss_pred EEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEe
Confidence 78899999999 5565555444 56666654444 3334445555666666 4 455444443 257899999
Q ss_pred eccCCCCCCCCc--eEEe-ccc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547 244 RRNLTSNGVGSP--INKF-EGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 319 (387)
Q Consensus 244 ~~~~~~~~~~~~--~~~~-~~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (387)
+.+ +.. ...+ ..+ ...+..++|+ ++ .++++...|+..+||.+...+. ....+..
T Consensus 302 ~~~------~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~--------------~~~~l~~ 359 (695)
T 2bkl_A 302 PAK------PARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK--------------PVRTVQL 359 (695)
T ss_dssp TTB------CSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC--------------EEEECCC
T ss_pred CCC------CCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC--------------eeEEecC
Confidence 876 332 2333 323 4568888888 44 4778888999988887663221 1222333
Q ss_pred C-CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 320 H-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 320 ~-~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
+ .+.+..++++|+++.++++.+ +....++|++||+..
T Consensus 360 ~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 360 PGVGAASNLMGLEDLDDAYYVFT----SFTTPRQIYKTSVST 397 (695)
T ss_dssp SSSSEECCCBSCTTCSEEEEEEE----ETTEEEEEEEEETTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence 3 567788899999988887776 456678999999873
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=1.6e-15 Score=129.11 Aligned_cols=242 Identities=10% Similarity=0.144 Sum_probs=149.9
Q ss_pred CCcEEEEEecCCCCcEEEEe---------cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 31 PGEVNRIRELPQNTKIVATH---------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
...+...++ +++.++.. ..++.|.+||+.++ +. ..+ . .+..+.|+|||++
T Consensus 14 ~~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~------------~~-~~l----~-~~~~~~~SpDg~~ 72 (347)
T 2gop_A 14 FAYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNN------------AR-RFI----E-NATMPRISPDGKK 72 (347)
T ss_dssp SCEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTC------------CE-EEE----E-SCEEEEECTTSSE
T ss_pred eEEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCC------------ce-EEc----c-cCCCeEECCCCCE
Confidence 344566666 45555543 12567999999887 22 223 2 4679999999999
Q ss_pred EEEecCC---Ce--EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 102 VLSGGKD---KS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 102 l~s~~~d---~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
|+.++.+ +. |.+|++.++.. ..+..+.. +..+.
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~-----------------------------------------~~l~~~~~-~~~~~ 110 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSS-----------------------------------------KKILEAKN-IRSLE 110 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEE-----------------------------------------EEEEEESE-EEEEE
T ss_pred EEEEEeccCCCcceEEEEECCCCce-----------------------------------------EEEEcCCC-cccee
Confidence 9887643 34 66677654321 11222223 89999
Q ss_pred EccCCCeeEEEecC---------------------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCe
Q 016547 177 FCPSSAQEFCSVGD---------------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL 229 (387)
Q Consensus 177 ~~~~~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (387)
|+|++ +.|+.++. ...|.+||+.+++ ....+.. . .+..+.|+| ++ +
T Consensus 111 wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp-dg-~ 183 (347)
T 2gop_A 111 WNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR-DK-I 183 (347)
T ss_dssp ECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET-TE-E
T ss_pred ECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC-Ce-E
Confidence 99999 55555542 2579999998776 2133333 3 788999999 88 7
Q ss_pred EEEeeCCC-------eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC-------CCeEEEEeCCC
Q 016547 230 ILTGSADN-------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-------DGLLNIWDYEK 295 (387)
Q Consensus 230 l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~-------d~~i~vwd~~~ 295 (387)
++++..++ ...+|.+.+ ++. ..+..+ ..+..+ +|+|++++..+.. ...|.+|| .
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~------~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~ 251 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWED------GKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G 251 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEET------TEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred EEEEecccccccccccccEEEeCC------Cce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C
Confidence 77776542 445555543 443 233333 445444 9999976544433 24688888 3
Q ss_pred CCceeccCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 296 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
. + .......+...+.. +.|+ ++ ++++++. ++.++|| +. +++. ..+.
T Consensus 252 ~-~--------------~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~-------~~~~~l~-~~------~g~~-~~~~ 298 (347)
T 2gop_A 252 K-E--------------VMGILDEVDRGVGQAKIKD-GK--VYFTLFE-------EGSVNLY-IW------DGEI-KPIA 298 (347)
T ss_dssp S-C--------------EEESSTTCCSEEEEEEEET-TE--EEEEEEE-------TTEEEEE-EE------SSSE-EEEE
T ss_pred C-c--------------eEeccccCCcccCCccEEc-Cc--EEEEEec-------CCcEEEE-Ec------CCce-EEEe
Confidence 2 1 12222445667776 8999 77 5554444 4899999 87 3443 3334
Q ss_pred ccCceEEEeeecC
Q 016547 375 KFKAHVISCTSKP 387 (387)
Q Consensus 375 ~~~~~v~~~~f~P 387 (387)
.+...|.+++|+|
T Consensus 299 ~~~~~v~~~~~s~ 311 (347)
T 2gop_A 299 KGRHWIMGFDVDE 311 (347)
T ss_dssp CSSSEEEEEEESS
T ss_pred cCCCeEEeeeeeC
Confidence 4577899999886
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=2.8e-13 Score=112.52 Aligned_cols=241 Identities=7% Similarity=-0.010 Sum_probs=165.0
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCCCCEEEEecC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.+...+.++++.+ +++++++...++.|.+||.. + ..... +..+. ..+.+++++++|..+++...
T Consensus 12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~------------~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~ 76 (299)
T 2z2n_A 12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-G------------KITEYPLPTPD-AKVMCLTISSDGEVWFTENA 76 (299)
T ss_dssp SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-C------------CEEEEECSSTT-CCEEEEEECTTSCEEEEETT
T ss_pred CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-C------------CeEEecCCccc-CceeeEEECCCCCEEEeCCC
Confidence 4567899999998 78888777768899999987 5 11111 11222 25789999999998888777
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
++.|..||....... ..+......+.++++.+++ .++++
T Consensus 77 ~~~i~~~~~~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~ 115 (299)
T 2z2n_A 77 ANKIGRITKKGIIKE----------------------------------------YTLPNPDSAPYGITEGPNG-DIWFT 115 (299)
T ss_dssp TTEEEEECTTSCEEE----------------------------------------EECSSTTCCEEEEEECTTS-CEEEE
T ss_pred CCeEEEECCCCcEEE----------------------------------------EeCCCcCCCceeeEECCCC-CEEEE
Confidence 889999987521000 0011233468899999988 77777
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAV 266 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i 266 (387)
...++.|..||. +++. ...........+..+++++ +++++++...++.|..||. + ++.... .......+
T Consensus 116 ~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 116 EMNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-S------GDITEFKIPTPASGP 185 (299)
T ss_dssp ETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCE
T ss_pred ecCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-C------CcEEEeeCCCCCCcc
Confidence 777889999998 4441 1122223456789999999 8888777777889999998 4 443322 23334568
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.++++++++. ++++...++.|.+||. ..... ......+...+.+++++++|..++ +.
T Consensus 186 ~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v-~~------ 242 (299)
T 2z2n_A 186 VGITKGNDDA-LWFVEIIGNKIGRITT-SGEIT--------------EFKIPTPNARPHAITAGAGIDLWF-TE------ 242 (299)
T ss_dssp EEEEECTTSS-EEEEETTTTEEEEECT-TCCEE--------------EEECSSTTCCEEEEEECSTTCEEE-EE------
T ss_pred eeEEECCCCC-EEEEccCCceEEEECC-CCcEE--------------EEECCCCCCCceeEEECCCCCEEE-ec------
Confidence 8999999988 5667666889999998 43211 112233456789999999987444 32
Q ss_pred CCCCceEEEEecC
Q 016547 347 TGGGGTLQIWRMS 359 (387)
Q Consensus 347 g~~dg~i~iw~~~ 359 (387)
..++.|..||..
T Consensus 243 -~~~~~i~~~d~~ 254 (299)
T 2z2n_A 243 -WGANKIGRLTSN 254 (299)
T ss_dssp -TTTTEEEEEETT
T ss_pred -cCCceEEEECCC
Confidence 234789999975
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=1.8e-14 Score=119.03 Aligned_cols=198 Identities=14% Similarity=0.181 Sum_probs=142.4
Q ss_pred CCCcEEEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d 108 (387)
|...+.++++.+.+++++++... ++.|.+||. ++ +....+.......+..++++++|+.+++...+
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g------------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG------------QFVRKFGATILQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS------------CEEEEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC------------cEEEEecCccCCCceEEEEeCCCCEEEEECCC
Confidence 44678999995437777777643 789999994 44 23333432222246899999999988888888
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cCCCCCeEEEEEccCCCeeEE
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~ 186 (387)
+.|.+||...... ..+ ..+...+.++++.+++ ++++
T Consensus 142 ~~i~~~~~~g~~~-----------------------------------------~~~~~~~~~~~p~~i~~~~~g-~l~v 179 (286)
T 1q7f_A 142 MRVIIFDQNGNVL-----------------------------------------HKFGCSKHLEFPNGVVVNDKQ-EIFI 179 (286)
T ss_dssp TEEEEECTTSCEE-----------------------------------------EEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred CEEEEEcCCCCEE-----------------------------------------EEeCCCCccCCcEEEEECCCC-CEEE
Confidence 9999999642110 111 1334568999999998 7888
Q ss_pred EecCCCeEEEEEccCCCCceeEEeecc--CCCeeEEEecCCCCCeEEEeeCCC-eEEEEEeccCCCCCCCCceEEecccc
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAH--DADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHS 263 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~ 263 (387)
+...++.|++||... + ....+..+ ...+..+++++ +++++++...++ .|.+||.. ++.+..+..+.
T Consensus 180 ~~~~~~~i~~~~~~g-~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG-Q--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKV 248 (286)
T ss_dssp EEGGGTEEEEEETTC-C--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESS
T ss_pred EECCCCEEEEEcCCC-C--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccC
Confidence 888899999999743 3 33444332 35789999999 888888887776 99999954 56666665443
Q ss_pred --ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 264 --AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 264 --~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
..+.+++++|+|+ ++++ +.|+.|++|++..
T Consensus 249 ~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 KHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred CCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence 2478999999997 5666 4689999999865
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.5e-14 Score=121.69 Aligned_cols=254 Identities=9% Similarity=-0.005 Sum_probs=165.9
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
.....+.+. +++++++...++.|.+||..++ +.+..+.... ....++++++++..++...++.|
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~------------~~~~~i~~~~--~p~~i~~~~~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTF------------KEVGRITGFT--SPRYIHFLSDEKAYVTQIWDYRI 107 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTC------------CEEEEEECCS--SEEEEEEEETTEEEEEEBSCSEE
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECccc------------EEEEEcCCCC--CCcEEEEeCCCeEEEEECCCCeE
Confidence 446777763 4667777777899999999988 5555554433 35799998888555555478999
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-C
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D 190 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~ 190 (387)
.+||..+.......... ...+.......+++ ..+ .++++.. .
T Consensus 108 ~~iD~~t~~~~~~i~~g-----------------------------------~~~~~~~~p~~i~~-~~~-~lyv~~~~~ 150 (328)
T 3dsm_A 108 FIINPKTYEITGYIECP-----------------------------------DMDMESGSTEQMVQ-YGK-YVYVNCWSY 150 (328)
T ss_dssp EEEETTTTEEEEEEECT-----------------------------------TCCTTTCBCCCEEE-ETT-EEEEEECTT
T ss_pred EEEECCCCeEEEEEEcC-----------------------------------CccccCCCcceEEE-ECC-EEEEEcCCC
Confidence 99999865432111000 00011123445666 343 5566554 4
Q ss_pred CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----------CeEEEEEeccCCCCCCCCceEEec
Q 016547 191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------NSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
++.|.++|+.+++ ....+.. ......++++| ++++++++..+ +.|.++|..+ ++....+.
T Consensus 151 ~~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~ 220 (328)
T 3dsm_A 151 QNRILKIDTETDK--VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFK 220 (328)
T ss_dssp CCEEEEEETTTTE--EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEE
T ss_pred CCEEEEEECCCCe--EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEe
Confidence 8899999999876 3444433 34567899999 88877777655 7899999987 66665554
Q ss_pred cc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 261 GH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 261 ~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
.. ......++|+|+++.++++.+ .|.+||..+...... . . ..........++++|++..+.++
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~----------~-~--~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR----------P-F--LEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSS----------C-S--BCCCSSCEEEEEECTTTCCEEEE
T ss_pred cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeee----------e-e--ecCCCCceEEEEEcCCCCeEEEE
Confidence 32 236789999999998765433 899999976422100 0 0 11124568899999977777776
Q ss_pred ecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
...| -..++.|.+||.. ++.+.++.
T Consensus 285 ~~~~---y~~~~~V~v~d~~-------g~~~~~i~ 309 (328)
T 3dsm_A 285 DAID---YQQQGIVYRYSPQ-------GKLIDEFY 309 (328)
T ss_dssp ECTT---SSSEEEEEEECTT-------CCEEEEEE
T ss_pred cccc---cccCCEEEEECCC-------CCEEEEEE
Confidence 5111 0335899999987 55555554
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=6.3e-15 Score=125.40 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=135.7
Q ss_pred CcEEEEEecCCCCcEEEEecCC---C--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547 32 GEVNRIRELPQNTKIVATHTDS---P--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
..+..++|+| +++.||..+.+ + .|.+||+.++ +...... +.. +..+.|+|+|+.|+.++
T Consensus 59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g------------~~~~l~~-~~~--~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETL------------SSKKILE-AKN--IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTT------------EEEEEEE-ESE--EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCC------------ceEEEEc-CCC--ccceeECCCCCEEEEEE
Confidence 5678899999 88888776643 3 3777888776 3333332 222 78999999999988876
Q ss_pred CC---------------------------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547 107 KD---------------------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 159 (387)
Q Consensus 107 ~d---------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (387)
.+ ..|.+||+.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--------------------------------------- 163 (347)
T 2gop_A 123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--------------------------------------- 163 (347)
T ss_dssp ECCCC---------CCCC---------CEEEEEEEETTTTE---------------------------------------
T ss_pred ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---------------------------------------
Confidence 32 356666665432
Q ss_pred CCceeecCCCCCeEEEEEccCCCeeEEEecCC------C-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEE
Q 016547 160 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD------S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 232 (387)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 232 (387)
.+..+.. . .+..+.|+|++ +++++..+ . ...+|.+.+++ ...+..+ ..+..+ +| +++.|+.
T Consensus 164 -~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~~~-~~~~~~--sp-dg~~l~~ 231 (347)
T 2gop_A 164 -VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMFEK-VSFYAV--DS-DGERILL 231 (347)
T ss_dssp -EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEEEE-ESEEEE--EE-CSSCEEE
T ss_pred -EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc---eEEeccC-cceeeE--CC-CCCEEEE
Confidence 1012222 2 67889999998 56665443 2 44555544333 2333334 444444 89 8988887
Q ss_pred eeCC--------CeEEEEEeccCCCCCCCCceEEeccccceEEE-EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547 233 GSAD--------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 303 (387)
Q Consensus 233 ~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~ 303 (387)
++.+ ..|.+|| + ++.......+...+.. +.|+ ++ ++++++.++.++|| +.. ++.
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~~---- 294 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--G------KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD-GEI---- 294 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--S------SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES-SSE----
T ss_pred EEccccCCccccceEEEEC--C------CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC-Cce----
Confidence 7754 3677777 4 5554444556778886 9999 77 56788889999999 873 221
Q ss_pred CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
..+..+...|.+++|+| . ++++++
T Consensus 295 -----------~~~~~~~~~v~~~~~s~--~-~~~~~~ 318 (347)
T 2gop_A 295 -----------KPIAKGRHWIMGFDVDE--I-VVYLKE 318 (347)
T ss_dssp -----------EEEECSSSEEEEEEESS--S-EEEEEE
T ss_pred -----------EEEecCCCeEEeeeeeC--c-EEEEEc
Confidence 22234467899999999 4 444433
No 185
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.68 E-value=2.4e-13 Score=113.89 Aligned_cols=246 Identities=6% Similarity=0.027 Sum_probs=159.2
Q ss_pred cCCCcEEEEEecCCCCcEEEE-------ecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe----ccCCCceEEEEECC
Q 016547 29 IHPGEVNRIRELPQNTKIVAT-------HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT----GHQDNAEFALAMCP 97 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t-------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~v~~~~~~~ 97 (387)
..-....+++|.+ +++++++ +..++.|.+||..+++ ...... ++.. .+.++++++
T Consensus 15 ~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~-~~~~i~~~~ 80 (314)
T 1pjx_A 15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGK------------KTVICKPEVNGYGG-IPAGCQCDR 80 (314)
T ss_dssp CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCC------------EEEEECCEETTEEC-CEEEEEECS
T ss_pred ccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCc------------EEEEEecccCCCCC-CCceEEEec
Confidence 3345568999997 7788888 6778899999987762 211111 2333 478999999
Q ss_pred C-CCEEEEecCCCeEEEEEcCCCcCccc-cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 98 T-EPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 98 ~-~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
+ ++++++.. .+.|.+||.+ +..... ... ........+.++
T Consensus 81 ~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~------------------------------------~~~~~~~~~~~i 122 (314)
T 1pjx_A 81 DANQLFVADM-RLGLLVVQTD-GTFEEIAKKD------------------------------------SEGRRMQGCNDC 122 (314)
T ss_dssp SSSEEEEEET-TTEEEEEETT-SCEEECCSBC------------------------------------TTSCBCBCCCEE
T ss_pred CCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc------------------------------------CCCccccCCcCE
Confidence 9 76555544 4478889876 322110 000 000112457889
Q ss_pred EEccCCCeeEEEecCC---------------CeEEEEEccCCCCceeEEeeccCCCeeEEEec----CCCCCeEEEe-eC
Q 016547 176 TFCPSSAQEFCSVGDD---------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWN----PLDDNLILTG-SA 235 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~-~~ 235 (387)
++.+++ +++++...+ +.|..||.. ++ . .....+......++++ | +++.++++ ..
T Consensus 123 ~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~-~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~ 196 (314)
T 1pjx_A 123 AFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--M-IQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETP 196 (314)
T ss_dssp EECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--E-EEEEEEESSEEEEEEEECTTS-CEEEEEEEETT
T ss_pred EECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CC--E-EEeccCCCCcceEEEecccCC-CCCEEEEEECC
Confidence 999998 666666544 567777765 43 2 2222334456889999 9 87655444 56
Q ss_pred CCeEEEEEeccCCCCCCCC-----ceEEecccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGS-----PINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 309 (387)
++.|.+||.... +. ....+..+. ..+..++++++|. ++++...++.|.+||..+...
T Consensus 197 ~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~----------- 259 (314)
T 1pjx_A 197 TKKLWSYDIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP----------- 259 (314)
T ss_dssp TTEEEEEEEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC-----------
T ss_pred CCeEEEEECCCC-----CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE-----------
Confidence 789999998621 22 223333333 5678999999997 566666688999999874321
Q ss_pred CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
...+..+...+.+++|+|+++.|+++... ++.|..|++..
T Consensus 260 ----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-------~~~l~~~~~~~ 299 (314)
T 1pjx_A 260 ----KMRIRCPFEKPSNLHFKPQTKTIFVTEHE-------NNAVWKFEWQR 299 (314)
T ss_dssp ----SEEEECSSSCEEEEEECTTSSEEEEEETT-------TTEEEEEECSS
T ss_pred ----eEEEeCCCCCceeEEECCCCCEEEEEeCC-------CCeEEEEeCCC
Confidence 22233455688999999999877765443 38999999873
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=1.5e-14 Score=134.58 Aligned_cols=222 Identities=8% Similarity=-0.033 Sum_probs=139.9
Q ss_pred ceEEEEECCCCCEEE-----EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547 89 AEFALAMCPTEPYVL-----SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 163 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~-----s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (387)
.+..++|||||++|+ .|+.+..|++||+.++..... .
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--------------------------------------~ 163 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--------------------------------------D 163 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--------------------------------------C
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--------------------------------------c
Confidence 588999999999998 555668999999987543100 0
Q ss_pred eecCCCCCeEEEEEccCCCeeEEEecCCCe-------------EEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCC
Q 016547 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSC-------------LILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDN 228 (387)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 228 (387)
.+... ....++|+||| +.|+.++.+.. |++|++.++... .+.....+...+..+.|+| +++
T Consensus 164 ~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~ 239 (695)
T 2bkl_A 164 VIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGK 239 (695)
T ss_dssp CBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSC
T ss_pred ccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCC
Confidence 01111 12578999999 66777776665 999999877632 2333334556788999999 999
Q ss_pred eEEEeeCCC----eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec---CCCeEEEEeCCCCCceec
Q 016547 229 LILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 229 ~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~~~~ 301 (387)
+|+.++.++ .|.++|... + ....+..+...+....+ +++. +++... .++.|.+||+......
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~------~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-- 308 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGE------K-DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-- 308 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTC------S-SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG--
T ss_pred EEEEEEeCCCCceEEEEEcCCC------C-ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc--
Confidence 888887666 566665433 3 34444445555556666 6676 665654 3588999999764321
Q ss_pred cCCCCCCCCceeeeeeccC-CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc-Cce
Q 016547 302 QGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAH 379 (387)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~ 379 (387)
........+ ...+..++|+ +..++++...| +..+||.++. .++.+..+..+ .+.
T Consensus 309 ----------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~~~~~~ 364 (695)
T 2bkl_A 309 ----------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD-------ATSEVRVATL-----KGKPVRTVQLPGVGA 364 (695)
T ss_dssp ----------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEET-------TEEEEEEEET-----TCCEEEECCCSSSSE
T ss_pred ----------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCeeEEecCCCCeE
Confidence 011112222 4467888887 45677765555 8888887652 13333444433 445
Q ss_pred EEEeeecC
Q 016547 380 VISCTSKP 387 (387)
Q Consensus 380 v~~~~f~P 387 (387)
|..++++|
T Consensus 365 v~~~~~s~ 372 (695)
T 2bkl_A 365 ASNLMGLE 372 (695)
T ss_dssp ECCCBSCT
T ss_pred EEEeecCC
Confidence 55555554
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=3.3e-14 Score=118.04 Aligned_cols=223 Identities=9% Similarity=0.017 Sum_probs=150.9
Q ss_pred eEEEeccCCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 79 DLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 79 ~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
...+..+.. ...+++|+|+++ .++++..++.|..|+..++
T Consensus 20 ~~~l~~~~~-~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-------------------------------------- 60 (296)
T 3e5z_A 20 ARRLADGFT-WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-------------------------------------- 60 (296)
T ss_dssp CEEEECCCS-SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------------------------------------
T ss_pred EEEEecCCc-cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------------------------------------
Confidence 344444444 467999999998 7778888999999998753
Q ss_pred CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEE-
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT- 232 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~- 232 (387)
...+..+...+.++++++++ .++++...++.|.+||..+++. ...... ....+..++++| +++++++
T Consensus 61 ----~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd 132 (296)
T 3e5z_A 61 ----LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEW--ESIADSFEGKKLNSPNDVCLAP-DGSLWFSD 132 (296)
T ss_dssp ----EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCE--EEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred ----eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcE--EEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence 13344456678999999998 6777777778999999977762 222111 123567899999 8988887
Q ss_pred ---eeCC-----------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547 233 ---GSAD-----------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 233 ---~~~d-----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
|+.+ +.-.||.+.. ...+..+..+......++|+|+++.+ ++.+.++.|.+||+...+.
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAP------DGTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECT------TSCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSC
T ss_pred CccccccccccccccccCCCcEEEEECC------CCCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCc
Confidence 3310 1124444443 22233444455667899999999976 7888899999999973222
Q ss_pred e-eccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC
Q 016547 299 K-VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK 377 (387)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 377 (387)
. .. ...+..+...+..++++++|..++++ ++.|.+|+.. ++.+..+..+.
T Consensus 206 ~~~~------------~~~~~~~~~~p~~i~~d~~G~l~v~~----------~~~v~~~~~~-------g~~~~~~~~~~ 256 (296)
T 3e5z_A 206 TEYQ------------GVHFTVEPGKTDGLRVDAGGLIWASA----------GDGVHVLTPD-------GDELGRVLTPQ 256 (296)
T ss_dssp EEEE------------EEEECCSSSCCCSEEEBTTSCEEEEE----------TTEEEEECTT-------SCEEEEEECSS
T ss_pred CcCC------------CeEeeCCCCCCCeEEECCCCCEEEEc----------CCeEEEECCC-------CCEEEEEECCC
Confidence 1 00 11112345567889999999855532 3899999976 55666666666
Q ss_pred ceEEEeee
Q 016547 378 AHVISCTS 385 (387)
Q Consensus 378 ~~v~~~~f 385 (387)
. +.+++|
T Consensus 257 ~-~~~~~f 263 (296)
T 3e5z_A 257 T-TSNLCF 263 (296)
T ss_dssp C-CCEEEE
T ss_pred C-ceeEEE
Confidence 6 778877
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.2e-13 Score=123.66 Aligned_cols=237 Identities=9% Similarity=0.047 Sum_probs=157.9
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcC--CCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--DHI 120 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~ 120 (387)
.+.++++...+++|.++|..++ +.+..+.... .+..+.|+|||+++++++.|+.|.+||+. +..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred CceEEEEeCCCCeEEEEECCCC------------eEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 4567778888999999999998 5565665443 35799999999999999999999999985 321
Q ss_pred CccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc----cCCCeeEEEecCCCeEEE
Q 016547 121 TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC----PSSAQEFCSVGDDSCLIL 196 (387)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i 196 (387)
. +..+... .....++|+ |+|...+++...++.|.+
T Consensus 232 ~----------------------------------------v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V 270 (567)
T 1qks_A 232 T----------------------------------------VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVI 270 (567)
T ss_dssp E----------------------------------------EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred E----------------------------------------eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence 1 1222222 235789999 698555555666799999
Q ss_pred EEccCCCCceeEEeec----------c-CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547 197 WDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265 (387)
Q Consensus 197 wd~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 265 (387)
+|..+.+ .+..+.. | ...+..+..++....+++....+|.|.++|..... ...+..+. ....
T Consensus 271 iD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~ 343 (567)
T 1qks_A 271 MDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERF 343 (567)
T ss_dssp EETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSS
T ss_pred EECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-cccc
Confidence 9988876 3333321 1 12567888888334555566667999999987621 11222332 3345
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee--eccCCCCeeEEEEccCCCeEEEEecCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
...+.|+|++++++++...++.|.++|+.+.... . .+.. ...|.+.-..+ ++|++..+.++..
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~-~-----------~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-- 408 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV-A-----------IEDTGGQTPHPGRGANF-VHPTFGPVWATSH-- 408 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE-E-----------EEECSSSSBCCTTCEEE-EETTTEEEEEEEB--
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE-E-----------EEeccCcCCCCccceee-ECCCCCcEEEeCC--
Confidence 6788999999998888878899999999975221 1 1111 11233221122 5887666665432
Q ss_pred CCCCCCCceEEEEecCC
Q 016547 344 CDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 344 ~~tg~~dg~i~iw~~~~ 360 (387)
..+++|.++|...
T Consensus 409 ----~g~~~Vsvid~~~ 421 (567)
T 1qks_A 409 ----MGDDSVALIGTDP 421 (567)
T ss_dssp ----SSSSEEEEEECCT
T ss_pred ----CCCCeEEEecCCC
Confidence 2348999999883
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=2.4e-14 Score=133.52 Aligned_cols=228 Identities=9% Similarity=-0.011 Sum_probs=146.1
Q ss_pred ceEEEEECCCCCEEEEecCCC-----eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547 89 AEFALAMCPTEPYVLSGGKDK-----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 163 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (387)
.+..++|||||++|+.++.++ .|++||+.++.... .
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~---------------------------------------~ 166 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------------------------------------D 166 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------------------------------------E
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc---------------------------------------c
Confidence 478999999999998765433 89999998653211 0
Q ss_pred eecCCCCCeEEEEEccCCCeeEEEecCCCe----------------EEEEEccCCCCceeEE--eeccCCCeeEEEecCC
Q 016547 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSC----------------LILWDARVGTSPVIKV--EKAHDADLHCVDWNPL 225 (387)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 225 (387)
.+. ...+..++|+||+ +.|+.++.++. |++|++.+++...... ...+...+..+.|+|
T Consensus 167 ~~~--~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp- 242 (710)
T 2xdw_A 167 VLE--RVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD- 242 (710)
T ss_dssp EEE--EECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-
T ss_pred ccc--CcccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-
Confidence 111 1125679999999 56666666554 9999998765321222 223455678999999
Q ss_pred CCCeEEEeeC-----CCeEEEEEeccCCCCC-CCCceEEeccccceEEEEEEcCCCCeeEEEecCC---CeEEEEeCCCC
Q 016547 226 DDNLILTGSA-----DNSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKV 296 (387)
Q Consensus 226 ~~~~l~~~~~-----dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d---~~i~vwd~~~~ 296 (387)
++++|+.++. +..|.+||+.+..... .......+..+...+.. .|+|+|..+++.+..+ +.|.+||+...
T Consensus 243 Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 9998888765 5689999987510000 01134555555555544 4888998776565433 47999998764
Q ss_pred CceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCc--eEEEEecCCCcccccchhhhh
Q 016547 297 GKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGG--TLQIWRMSDLIYRPQDEVLAE 372 (387)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg--~i~iw~~~~~~~~~~~~~~~~ 372 (387)
... ....+..|.. .+..++|++ +..++++...| + .|.+|++. +++.+..
T Consensus 322 ~~~-------------~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~-------g~~~l~~~~~~------~g~~~~~ 374 (710)
T 2xdw_A 322 EES-------------KWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHD-------VKNTLQLHDLA------TGALLKI 374 (710)
T ss_dssp CGG-------------GCEEEECCCSSCEEEEEEEET-TTEEEEEEEET-------TEEEEEEEETT------TCCEEEE
T ss_pred Ccc-------------cceeccCCCCCCeEEEEEEEc-CCEEEEEEEEC-------CEEEEEEEECC------CCCEEEe
Confidence 211 0122233333 678899985 45666655544 6 45666765 4556666
Q ss_pred hhccCceEEEeeecC
Q 016547 373 LEKFKAHVISCTSKP 387 (387)
Q Consensus 373 ~~~~~~~v~~~~f~P 387 (387)
+..+.+.|..++++|
T Consensus 375 l~~~~~~v~~~~~s~ 389 (710)
T 2xdw_A 375 FPLEVGSVVGYSGQK 389 (710)
T ss_dssp ECCCSSEEEEEECCT
T ss_pred cCCCCceEEEEecCC
Confidence 776777788888765
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=8.2e-14 Score=113.83 Aligned_cols=213 Identities=9% Similarity=0.035 Sum_probs=151.0
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
.+++|++++.|+.|.+||.+++ +.+..+..+....+.++.++|+|+++++ .++.|..||. +++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK------------EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT------------EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC------------eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE
Confidence 4689999999999999999888 6667777665224689999999998883 4778999987 44322
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCCeeEEEecC-CCeEEEEEcc
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGD-DSCLILWDAR 200 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 200 (387)
..+..+ ...+.++.+.++| +++++.+. ++.|..+|.
T Consensus 69 ----------------------------------------W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~- 106 (276)
T 3no2_A 69 ----------------------------------------WNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM- 106 (276)
T ss_dssp ----------------------------------------EEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred ----------------------------------------EEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence 222222 2467889999999 67777666 778888876
Q ss_pred CCCCceeEEee------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547 201 VGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 274 (387)
Q Consensus 201 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (387)
+++ .+..+. .+......+++.+ +++++++...++.|..||.. ++.+.++... ..+.++.+.++
T Consensus 107 ~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~ 175 (276)
T 3no2_A 107 KGE--VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDN 175 (276)
T ss_dssp TSC--EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTT
T ss_pred CCC--EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCC
Confidence 444 233322 1222455677888 99999999999999999976 6777777754 34556788899
Q ss_pred CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC------CCCeeEEEEccCCCeEEEE
Q 016547 275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH------RDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~s 339 (387)
+.. ++++..+++|..+|..++.. +..+..+ ...+..+...++|..+++.
T Consensus 176 g~~-~v~~~~~~~v~~~d~~tG~~---------------~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 176 GDC-LVACGDAHCFVQLNLESNRI---------------VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp SCE-EEECBTTSEEEEECTTTCCE---------------EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCE-EEEeCCCCeEEEEeCcCCcE---------------EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 885 55777788999999886532 2232221 1247888888988766643
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=7.9e-13 Score=118.47 Aligned_cols=268 Identities=10% Similarity=0.081 Sum_probs=176.4
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEecc--CCCCcccccCCCCCCCeEEEeccCCCceEEEEEC----CCC
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC----PTE 99 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~----~~~ 99 (387)
..+.....+..+.|+| +++++.+++.|+.|.+||+. +. +.+..+..... ...++|+ |||
T Consensus 191 ~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~------------~~v~~i~~G~~--P~~ia~s~~~~pDG 255 (567)
T 1qks_A 191 TVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP------------TTVAEIKIGSE--ARSIETSKMEGWED 255 (567)
T ss_dssp EEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------CEEEEEECCSE--EEEEEECCSTTCTT
T ss_pred EEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC------------cEeEEEecCCC--CceeEEccccCCCC
Confidence 3344555678999999 88888888999999999996 55 44555554433 4699999 699
Q ss_pred CEEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-CeEEEEE
Q 016547 100 PYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-TVEDVTF 177 (387)
Q Consensus 100 ~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 177 (387)
++++++.. +++|.++|..+............ .......|.. .+..+..
T Consensus 256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~------------------------------~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM------------------------------TYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp TEEEEEEEETTEEEEEETTTCCEEEEEECCEE------------------------------CTTTCCEESCCCEEEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEecccc------------------------------ccccccccCCCceEEEEE
Confidence 99887664 59999999876433221110000 0000001222 5778888
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCce
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
+++++.+++....+|.|.++|....+......+ ........+.|+| ++++++++. .++.|.++|+.+ ++.+
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t------~kl~ 377 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE------GKLV 377 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEE
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC------CcEE
Confidence 888777788888889999999877653222222 3445677899999 888877665 578999999998 6665
Q ss_pred EEecc-----ccc-eEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 257 NKFEG-----HSA-AVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 257 ~~~~~-----~~~-~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
..+.. |.+ .+. + ++|++..+++++. .++.|.++|....+.+ ....+.+..+......-..+..
T Consensus 378 ~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--------~~~~kvv~~i~~~g~g~~~i~~ 447 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--------DNAWKILDSFPALGGGSLFIKT 447 (567)
T ss_dssp EEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--------TTBTSEEEEEECSCSCCCCEEC
T ss_pred EEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--------cccCEEEEEEecCCCCCEEEEe
Confidence 55543 322 222 2 5787665666654 4689999998863211 0112345555544344456789
Q ss_pred ccCCCeEEEEecCCCCCCCC----CceEEEEecCCC
Q 016547 330 NASDPWTVVSVSDDCDSTGG----GGTLQIWRMSDL 361 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~----dg~i~iw~~~~~ 361 (387)
+|+++++.++.. .+- .++|.++|+.++
T Consensus 448 ~p~~~~l~v~~~-----~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 448 HPNSQYLYVDAT-----LNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSEEEEECT-----TCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecC-----CCCCcccCceEEEEECCcc
Confidence 999999987642 111 369999999854
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.64 E-value=7.4e-14 Score=130.79 Aligned_cols=252 Identities=10% Similarity=-0.038 Sum_probs=157.7
Q ss_pred CCCcEEEEEecCCCCcEEEEecCC-----CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDS-----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
|...+..++|+| ++++||.+..+ .+|++||+++++ .... ..+.. .+..++|+|| +.|+.
T Consensus 161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~------------~~~~-~~~~~-~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGK------------PLAD-ELKWV-KFSGLAWLGN-DALLY 224 (741)
T ss_dssp --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCC------------EEEE-EEEEE-ESCCCEESTT-SEEEE
T ss_pred CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCC------------CCCc-cCCCc-eeccEEEECC-CEEEE
Confidence 444788999999 88888776543 369999999983 2221 11111 1247899999 98888
Q ss_pred ecCCCe--------------EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 105 GGKDKS--------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 105 ~~~d~~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
++.|+. |.+|++.++.... ..+.....+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~------------------------------------~lv~~~~~~~~ 268 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD------------------------------------QPVFATPELPK 268 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGC------------------------------------EEEECCTTCTT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhC------------------------------------EEEeccCCCCe
Confidence 776554 7788876432100 00111122334
Q ss_pred CeEEEEEccCCCeeEEEecC-----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----CeEEE
Q 016547 171 TVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRM 241 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~ 241 (387)
.+..+.|+|+| ++++..+. ...|.+||+.++.......+..+...+.... +| +++.|+..+.+ +.|.+
T Consensus 269 ~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~ 345 (741)
T 1yr2_A 269 RGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVR 345 (741)
T ss_dssp CEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEE
T ss_pred EEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEE
Confidence 58899999999 55555443 3489999998762111233334444444443 47 78878777764 45999
Q ss_pred EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-C
Q 016547 242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-H 320 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 320 (387)
||+.+.. ......+..+...+..++++ +..++++...|+..+||.+...+. ....+.. +
T Consensus 346 ~d~~~~~----~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~--------------~~~~l~~~~ 405 (741)
T 1yr2_A 346 VDLSGST----PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK--------------PAGAVSLPG 405 (741)
T ss_dssp EECSSSS----CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC--------------EEEECBCSS
T ss_pred EeCCCCc----cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC--------------ceeeccCCC
Confidence 9987510 01223334455567778877 445778888899888886653221 1222232 3
Q ss_pred CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
...+..+.++|+++.++++.+ +....++|++||+..
T Consensus 406 ~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 406 IGSASGLSGRPGDRHAYLSFS----SFTQPATVLALDPAT 441 (741)
T ss_dssp SCEEEEEECCBTCSCEEEEEE----ETTEEEEEEEEETTT
T ss_pred CeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence 567889999999988887765 456678999999873
No 193
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.64 E-value=8.7e-14 Score=117.58 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=129.9
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 112 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~ 112 (387)
+++.+++++ ...++++|+.++ +++|+++......... .....+.... .+.. |+.++| ++++|+++ .++.|+
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~-~~~~~~~~~~-~lp~--V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSD-STPLTFKWEK-EIPD--VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSS-SCCCCCSEEE-ECTT--EEEEEE--ETTEEEEE-ESSEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccc-cccccceEEe-eCCC--eeEEEE--CCCEEEEE-cCCcEE
Confidence 589999999 777888888885 6679977553111000 0001222223 3554 899999 99999999 789999
Q ss_pred EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547 113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 192 (387)
Q Consensus 113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 192 (387)
+||+.+.... .....|...+.++.+.+. + +++++.||
T Consensus 110 v~dv~sl~~~----------------------------------------~~~~~~~~~v~~i~~~~p--~-~av~~~dG 146 (388)
T 1xip_A 110 SLDLEELSEF----------------------------------------RTVTSFEKPVFQLKNVNN--T-LVILNSVN 146 (388)
T ss_dssp EEESSSTTCE----------------------------------------EEEEECSSCEEEEEECSS--E-EEEEETTS
T ss_pred EEEchhhhcc----------------------------------------CccceeecceeeEEecCC--C-EEEEECCC
Confidence 9999754211 223445566888877654 3 88889999
Q ss_pred eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc--eEEe------c---c
Q 016547 193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKF------E---G 261 (387)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~------~---~ 261 (387)
.|.+||+..+. ... +...|++++|+| +| ++.|..||.+++|+... ... ..++ . +
T Consensus 147 ~L~v~dl~~~~--~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~------~~~~~k~~I~~Pp~~~~~~~ 211 (388)
T 1xip_A 147 DLSALDLRTKS--TKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRN------GEMEKQFEFSLPSELEELPV 211 (388)
T ss_dssp EEEEEETTTCC--EEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEET------TEEEEEEEECCCHHHHTSCT
T ss_pred CEEEEEccCCc--ccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCC------ccccccceecCCcccccccC
Confidence 99999999776 222 345899999999 77 78899999999998876 443 4455 2 3
Q ss_pred ccceEEEEEEcCCCCeeEE
Q 016547 262 HSAAVLCVQWSPDKSSVFG 280 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~ 280 (387)
|...|.++.|.+++.++++
T Consensus 212 ~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 212 EEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSEEEEEEESSSSEEEEE
T ss_pred CCeeEEEEEEecCCeEEEE
Confidence 7789999999999986543
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=6.8e-12 Score=104.18 Aligned_cols=241 Identities=9% Similarity=-0.027 Sum_probs=161.9
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEecC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
.....+.++++.+ ++++.++...++.|.+||.. ++ ... .+..+.. .+..+++.++++..++...
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~------------~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~ 81 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GR------------IKEFEVPTPDA-KVMCLIVSSLGDIWFTENG 81 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC------------EEEEECSSTTC-CEEEEEECTTSCEEEEETT
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-Cc------------eEEEECCCCCC-cceeEEECCCCCEEEEecC
Confidence 3456789999988 78888887778999999987 41 111 1122222 4789999999998887777
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
++.|..+|.. +.... .........+.++++.+++ .++++
T Consensus 82 ~~~v~~~d~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~ 120 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTE---------------------------------------YPLPQPDSGPYGITEGLNG-DIWFT 120 (300)
T ss_dssp TTEEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECSTT-CEEEE
T ss_pred CCeEEEECCC-CCeEE---------------------------------------ecCCCCCCCCccceECCCC-CEEEE
Confidence 8899999876 22110 1111123568899999988 77777
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAV 266 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i 266 (387)
...++.|..+|.. ++. ...........+..+++++ +++++++...++.|..+|. + ++... ........+
T Consensus 121 ~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 121 QLNGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-T------GKLEEYPLPTNAAAP 190 (300)
T ss_dssp ETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCE
T ss_pred ccCCCeEEEECCC-CCE-EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-C------CcEEEeeCCCCCCCc
Confidence 7778899999987 441 1122233456789999999 8887776666788999987 3 33322 222334568
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS 346 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t 346 (387)
.++++.+++. ++++....+.|.+||... ... ......+...+.++++++++..++ +.
T Consensus 191 ~~i~~d~~g~-l~v~~~~~~~i~~~~~~g-~~~--------------~~~~~~~~~~~~~i~~d~~g~l~v-~~------ 247 (300)
T 2qc5_A 191 VGITSGNDGA-LWFVEIMGNKIGRITTTG-EIS--------------EYDIPTPNARPHAITAGKNSEIWF-TE------ 247 (300)
T ss_dssp EEEEECTTSS-EEEEETTTTEEEEECTTC-CEE--------------EEECSSTTCCEEEEEECSTTCEEE-EE------
T ss_pred ceEEECCCCC-EEEEccCCCEEEEEcCCC-cEE--------------EEECCCCCCCceEEEECCCCCEEE-ec------
Confidence 8999999987 566666678899999832 111 111223445788999999987444 32
Q ss_pred CCCCceEEEEecC
Q 016547 347 TGGGGTLQIWRMS 359 (387)
Q Consensus 347 g~~dg~i~iw~~~ 359 (387)
..++.|..|+..
T Consensus 248 -~~~~~i~~~~~~ 259 (300)
T 2qc5_A 248 -WGANQIGRITND 259 (300)
T ss_dssp -TTTTEEEEECTT
T ss_pred -cCCCeEEEECCC
Confidence 234788888875
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=1.8e-11 Score=101.50 Aligned_cols=238 Identities=6% Similarity=-0.006 Sum_probs=160.2
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
+...+.++++.+ ++.++++...++.|..||.+.. .....+.... ..+..+++.++|+.+++...++
T Consensus 55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~------------~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~ 120 (299)
T 2z2n_A 55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGI------------IKEYTLPNPD-SAPYGITEGPNGDIWFTEMNGN 120 (299)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSC------------EEEEECSSTT-CCEEEEEECTTSCEEEEETTTT
T ss_pred ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCc------------EEEEeCCCcC-CCceeeEECCCCCEEEEecCCc
Confidence 457799999988 7788888777888999997622 1011111122 2578999999998888877788
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|..||. ++.... .........+.++++.+++ .++++..
T Consensus 121 ~i~~~d~-~g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~ 159 (299)
T 2z2n_A 121 RIGRITD-DGKIRE---------------------------------------YELPNKGSYPSFITLGSDN-ALWFTEN 159 (299)
T ss_dssp EEEEECT-TCCEEE---------------------------------------EECSSTTCCEEEEEECTTS-CEEEEET
T ss_pred eEEEECC-CCCEEE---------------------------------------ecCCCCCCCCceEEEcCCC-CEEEEeC
Confidence 9999987 321110 0111223468899999998 7777777
Q ss_pred CCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEE
Q 016547 190 DDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVL 267 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~ 267 (387)
.++.|..||. +++ .... .......+..+++++ +++++++...++.|..||. + +.... ....+...+.
T Consensus 160 ~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 160 QNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNARPH 228 (299)
T ss_dssp TTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEE
T ss_pred CCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCCce
Confidence 7889999998 555 2221 233455688999999 8887777667889999998 4 44322 2233446789
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg 347 (387)
+++++++|. ++++...++.|..||... .. .......+...+.++++ +++..+++ .
T Consensus 229 ~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~~-------------~~~~~~~~~~~~~~i~~-~~g~l~v~-~------- 283 (299)
T 2z2n_A 229 AITAGAGID-LWFTEWGANKIGRLTSNN--II-------------EEYPIQIKSAEPHGICF-DGETIWFA-M------- 283 (299)
T ss_dssp EEEECSTTC-EEEEETTTTEEEEEETTT--EE-------------EEEECSSSSCCEEEEEE-CSSCEEEE-E-------
T ss_pred eEEECCCCC-EEEeccCCceEEEECCCC--ce-------------EEEeCCCCCCccceEEe-cCCCEEEE-e-------
Confidence 999999998 566666788999999832 11 11112344567899999 87765552 2
Q ss_pred CCCceEEEEecC
Q 016547 348 GGGGTLQIWRMS 359 (387)
Q Consensus 348 ~~dg~i~iw~~~ 359 (387)
. .+.|..++..
T Consensus 284 ~-~~~l~~~~~~ 294 (299)
T 2z2n_A 284 E-CDKIGKLTLI 294 (299)
T ss_dssp T-TTEEEEEEEC
T ss_pred c-CCcEEEEEcC
Confidence 2 2567777766
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.61 E-value=3e-12 Score=110.79 Aligned_cols=254 Identities=13% Similarity=0.109 Sum_probs=155.5
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC--
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-- 109 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~-- 109 (387)
.....|++.+ +++++++...++.|++||.+++ .......... ... ++|+++++.|+++..++
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g------------~~~~~~~~~~--~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDN------------KVTTVHPGFK--GGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTT------------EEEEEEETCC--BCB-CEECTTSSEEEEEBSSTTC
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCC------------EEEEeeccCC--CCc-eeEecCCCcEEEEecCCCc
Confidence 4678999998 8888888888899999999877 3333333322 233 99999999998888766
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEccCCCeeEEEe
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
.|.+++......... +..+ ......+.+++++|+++.+++ +
T Consensus 195 ~I~~~d~~~~~~~~~-------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv-~ 236 (409)
T 3hrp_A 195 TVYVYMKASGWAPTR-------------------------------------IGQLGSTFSGKIGAVALDETEEWLYF-V 236 (409)
T ss_dssp EEEEEEGGGTTCEEE-------------------------------------EEECCTTSCSCCCBCEECTTSSEEEE-E
T ss_pred eEEEEEcCCCceeEE-------------------------------------eeeccchhcCCcEEEEEeCCCCeEEE-E
Confidence 788888754321000 0000 113355788999995435555 6
Q ss_pred cCCCeEEEEEccCCCCceeEE--eeccCCCe-e-EEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547 189 GDDSCLILWDARVGTSPVIKV--EKAHDADL-H-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 263 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~i-~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~- 263 (387)
..++.|+.||...+....... ..++...- . .++|+|.++.++++-..++.|+.|+... . +..+.++.
T Consensus 237 d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~ 308 (409)
T 3hrp_A 237 DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSAT 308 (409)
T ss_dssp CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTT
T ss_pred ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCC
Confidence 678899999998766211100 11222222 3 9999994466666666788999998763 2 22222221
Q ss_pred --------------ceEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCC-CCCCCCceeeeeeccCCCCeeEE
Q 016547 264 --------------AAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGP-RTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 264 --------------~~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
.....++++|+|. |+++-. .++.|+.|++..+........ ........ ......-.....+
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g--~~~~~~~~~P~gi 385 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDG--TPLEATFNYPYDI 385 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCB--STTTCCBSSEEEE
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCC--ChhceEeCCceEE
Confidence 3478999999998 677887 899999999765321100000 00000000 0000112467899
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
++++++. |+++- ..++.|+.+++
T Consensus 386 avd~~g~-lyVad-------~~n~~Ir~i~~ 408 (409)
T 3hrp_A 386 CYDGEGG-YWIAE-------AWGKAIRKYAV 408 (409)
T ss_dssp EECSSSE-EEEEE-------STTCEEEEEEE
T ss_pred EEcCCCC-EEEEE-------CCCCeEEEEEe
Confidence 9999964 55533 34478888765
No 197
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=4.5e-12 Score=105.09 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=152.0
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 111 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i 111 (387)
.--.+..|++.++.++++...++.|..||..+++ . ..+. ... .+.+++++++|+++++. ++.|
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~~~~i~~~~dG~l~v~~--~~~l 75 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------V-QRVT-MDA-PVSSVALRQSGGYVATI--GTKF 75 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------------E-EEEE-CSS-CEEEEEEBTTSSEEEEE--TTEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCc------------E-EEEe-CCC-ceEEEEECCCCCEEEEE--CCeE
Confidence 3456888999778888888889999999998762 2 2222 222 57899999999955543 5689
Q ss_pred EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEccCCCeeEEEec
Q 016547 112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.+||.+++..... .... .....+..+++.|+| +++++..
T Consensus 76 ~~~d~~~g~~~~~--------------------------------------~~~~~~~~~~~~~di~~d~dG-~l~~~~~ 116 (297)
T 3g4e_A 76 CALNWKEQSAVVL--------------------------------------ATVDNDKKNNRFNDGKVDPAG-RYFAGTM 116 (297)
T ss_dssp EEEETTTTEEEEE--------------------------------------EECCTTCSSEEEEEEEECTTS-CEEEEEE
T ss_pred EEEECCCCcEEEE--------------------------------------EecCCCCCCCCCCCEEECCCC-CEEEecC
Confidence 9999875432110 0000 112357889999998 5555432
Q ss_pred C---------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCC-----
Q 016547 190 D---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS----- 254 (387)
Q Consensus 190 ~---------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~----- 254 (387)
. ...-.+|.+..... ...........+.++|+| +++.| ++.+.++.|..||+.... +.
T Consensus 117 ~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~----G~~~~~~ 189 (297)
T 3g4e_A 117 AEETAPAVLERHQGALYSLFPDHH--VKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQT----GQISNRR 189 (297)
T ss_dssp ECCSBTTBCCTTCEEEEEECTTSC--EEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTT----CCEEEEE
T ss_pred CcccccccccCCCcEEEEEECCCC--EEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCC----CcccCcE
Confidence 1 12334554443221 222233445678999999 88755 555567899999984211 32
Q ss_pred ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCC
Q 016547 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASD 333 (387)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 333 (387)
.+..+..+...+..+++.++|. |.++...++.|.+||..++ +++..+..+...+++++|. |++
T Consensus 190 ~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---------------~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 190 SVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---------------KRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp EEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---------------CEEEEEECSSSBEEEEEEESGGG
T ss_pred EEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---------------eEEEEEECCCCCceEEEEeCCCC
Confidence 2223333456788999999997 5667767888999998764 2344445555689999998 898
Q ss_pred CeEEEEecC
Q 016547 334 PWTVVSVSD 342 (387)
Q Consensus 334 ~~l~~s~s~ 342 (387)
+.|+++...
T Consensus 254 ~~L~vt~~~ 262 (297)
T 3g4e_A 254 SEMYVTCAR 262 (297)
T ss_dssp CEEEEEEBC
T ss_pred CEEEEEcCC
Confidence 988887764
No 198
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=4e-13 Score=114.54 Aligned_cols=227 Identities=9% Similarity=0.087 Sum_probs=145.2
Q ss_pred CcEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCCC-CEEEEecC
Q 016547 32 GEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTE-PYVLSGGK 107 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~~-~~l~s~~~ 107 (387)
.....++++| ++++|+++.. +++|.+||+.+. +.+.. +. ... ...+.+.|++ ..+++.+.
T Consensus 108 ~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~------------~~~~~~i~-~~~--~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 108 NYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKG------------DYVEDVTA-AAG--CWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTT------------EEEEEEGG-GTT--EEEEEECTTSSSEEEEEET
T ss_pred CCcceEEECC-CCCEEEEECCCCCCeEEEEECCCC------------cEEEEEec-CCC--cceeEEcCCCCeeEEEECC
Confidence 4567899999 7888877753 689999999988 34433 22 222 2335677765 56778888
Q ss_pred CCeEEEEEcCCCcCcc-ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 108 DKSVVLWSIQDHITSS-ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
||++.+|++....... .... ...+.....++ .+.+++++ ..++
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~----------------------------------~~~~~~~~~~~-~~~~~~~g-~~~~ 215 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRS----------------------------------KQMFSVKDDPI-FIAPALDK-DKAH 215 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEEC----------------------------------CCCSCTTTSCB-CSCCEECS-SEEE
T ss_pred CCcEEEEEECCCCcEeeeccc----------------------------------cceEcCCCCce-EEEecccC-CEEE
Confidence 9999999986421110 0000 00011111111 22335666 4455
Q ss_pred EecCCCeEEEEEccCCCCceeEEeec------c----CCCeeEEEecCCCCCeEEEeeC-----------CCeEEEEEec
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKA------H----DADLHCVDWNPLDDNLILTGSA-----------DNSVRMFDRR 245 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~i~~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~ 245 (387)
..+.++.|.++|+..........+.. + ......++++| +++.++++.. .+.|.+||+.
T Consensus 216 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~ 294 (361)
T 2oiz_A 216 FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK 294 (361)
T ss_dssp EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred EEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence 56678999999987654222222110 0 11222378999 7776666543 3589999999
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
+ .+.+.++..+. +.+++|+|+|++|+ +++. +.|.+||..+... +.+..+..+.....
T Consensus 295 t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~~l-------------~~~~~i~~~G~~P~ 351 (361)
T 2oiz_A 295 T------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQPEP-------------KLLRTIEGAAEASL 351 (361)
T ss_dssp T------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSSSC-------------EEEEEETTSCSSEE
T ss_pred C------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCCcc-------------eeeEEeccCCCCcE
Confidence 8 88899888776 89999999999765 4554 9999999987411 23444455667788
Q ss_pred EEEEccCCC
Q 016547 326 DFHWNASDP 334 (387)
Q Consensus 326 ~~~~~~~~~ 334 (387)
.++++|+|.
T Consensus 352 ~~~~~p~G~ 360 (361)
T 2oiz_A 352 QVQFHPVGG 360 (361)
T ss_dssp EEEECCCSC
T ss_pred EEEecCCCC
Confidence 999999885
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=7.5e-13 Score=108.26 Aligned_cols=217 Identities=6% Similarity=-0.089 Sum_probs=139.0
Q ss_pred eEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 90 EFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 90 v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
..+++++++|+.++ +...++.|.+|+..+.... .....+
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~----------------------------------------~~~~~~ 65 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT----------------------------------------VLPFNG 65 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----E----------------------------------------ECCCCS
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccc----------------------------------------eEeeCC
Confidence 46999999999777 5577899999987543211 000112
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
...+.++++.+++ +++++.. ++.|.+||...... ..........+..+++++ +++++++...++.|.+|+..+
T Consensus 66 ~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~--~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~-- 138 (270)
T 1rwi_B 66 LYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQ--TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS-- 138 (270)
T ss_dssp CCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCC--EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC--
T ss_pred cCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceE--eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC--
Confidence 2456789999988 6666665 88999999876542 211112335789999999 888888777789999997554
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 328 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (387)
.............+.+++++++++ ++++...++.|.+||....... .....+...+.+++
T Consensus 139 ----~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 139 ----KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQV---------------VLPFTDITAPWGIA 198 (270)
T ss_dssp ----CSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEE---------------ECCCSSCCSEEEEE
T ss_pred ----ceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceE---------------eecccCCCCceEEE
Confidence 322222222223567899999998 6767777889999998763211 11122335688999
Q ss_pred EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
++++|. +.++. ..++.|.+|+... .........+...+.++++.|
T Consensus 199 ~d~~g~-l~v~~-------~~~~~v~~~~~~~------~~~~~~~~~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 199 VDEAGT-VYVTE-------HNTNQVVKLLAGS------TTSTVLPFTGLNTPLAVAVDS 243 (270)
T ss_dssp ECTTCC-EEEEE-------TTTSCEEEECTTC------SCCEECCCCSCSCEEEEEECT
T ss_pred ECCCCC-EEEEE-------CCCCcEEEEcCCC------CcceeeccCCCCCceeEEECC
Confidence 999984 55433 3348999999873 221111122234567777654
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.58 E-value=2.2e-13 Score=115.19 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=131.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
.++.+++++...++++|+.+ .+.+|++++......... ...++... ..+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----------------------------~~~~~~~~-~~l 87 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----------------------------TPLTFKWE-KEI 87 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----------------------------CCCCCSEE-EEC
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----------------------------ccccceEE-eeC
Confidence 47899999999999999987 556699875431111000 00111122 234
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
.. |+.++| ++ ..|+++ .++.|++||+++.. .......|...+.++.+.+ . .+++++.||.|.+||+..
T Consensus 88 p~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~-- 155 (388)
T 1xip_A 88 PD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT-- 155 (388)
T ss_dssp TT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT--
T ss_pred CC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC--
Confidence 55 999999 66 677777 88999999998876 3445566777888887765 3 288899999999999997
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc--eeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK--KVEQGPRTTNYPAGLFFQHAGHRDKVVD 326 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 326 (387)
+.... +...|++++|+|+| ++.|..||.+++|+...... ..... .|+. +....+|...|.+
T Consensus 156 ----~~~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~-----~Pp~-~~~~~~~~~~V~s 218 (388)
T 1xip_A 156 ----KSTKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFS-----LPSE-LEELPVEEYSPLS 218 (388)
T ss_dssp ----CCEEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEEC-----CCHH-HHTSCTTTSEEEE
T ss_pred ----Ccccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceec-----CCcc-cccccCCCeeEEE
Confidence 44432 45689999999999 34677899999998876421 10000 0000 0001147789999
Q ss_pred EEEccCCCeEEEEecC
Q 016547 327 FHWNASDPWTVVSVSD 342 (387)
Q Consensus 327 ~~~~~~~~~l~~s~s~ 342 (387)
+.|.+++.++++-...
T Consensus 219 I~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 219 VTILSPQDFLAVFGNV 234 (388)
T ss_dssp EEESSSSEEEEEEECC
T ss_pred EEEecCCeEEEEEcCC
Confidence 9999988877654443
No 201
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=4e-14 Score=122.67 Aligned_cols=200 Identities=11% Similarity=0.036 Sum_probs=125.7
Q ss_pred eEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547 90 EFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 166 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (387)
+..++|+|||++|+....+ ..|.+||+.++... ....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------------------~l~~ 77 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------------------QLTE 77 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------------------ECCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------------------Eeec
Confidence 5678999999998776432 46888887654221 1111
Q ss_pred CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeE-------------------EEecCCCC
Q 016547 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC-------------------VDWNPLDD 227 (387)
Q Consensus 167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~ 227 (387)
.+......+.|+|++ +.|+.++.++.|++||+.+++. ......+...... +.|+| ++
T Consensus 78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg 153 (396)
T 3c5m_A 78 GKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEE--QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LT 153 (396)
T ss_dssp SSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCE--EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CC
T ss_pred CCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCc--EEEEecccccCCCCCEEEeccCCccccccccccccCC-CC
Confidence 122222347899999 7787888888999999988762 2233223322222 34567 66
Q ss_pred CeEEEe-----eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC-CCCeeEEEecC-C----CeEEEEeCCCC
Q 016547 228 NLILTG-----SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAE-D----GLLNIWDYEKV 296 (387)
Q Consensus 228 ~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~~-d----~~i~vwd~~~~ 296 (387)
+.++.. ..+..|.+||+.+ ++..... .+...+..+.|+| +++.++.+... . ..|.+||+...
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~------g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 154 SWEKFAEFYHTNPTCRLIKVDIET------GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp SHHHHHHHHHTCCCEEEEEEETTT------CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred cceeeeeeccCCCcceEEEEECCC------CcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence 666554 3567899999886 5443333 4667789999999 77755433321 1 46888887653
Q ss_pred CceeccCCCCCCCCceeeeeeccC--CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 297 GKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.. ..+..+ ...+..++|+|++++++++... .+..++.|++||+.
T Consensus 227 ~~----------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 227 NV----------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYF---KGQTDRVIYKANPE 272 (396)
T ss_dssp CC----------------EESSCCCTTEEEEEEEECTTSSCEEEEEEE---TTTCCEEEEEECTT
T ss_pred ce----------------eEeeccCCCccccceEECCCCCEEEEEecC---CCCccceEEEEECC
Confidence 21 111122 2357889999999987765433 23344669999997
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=2.9e-12 Score=106.27 Aligned_cols=223 Identities=10% Similarity=0.085 Sum_probs=145.4
Q ss_pred ceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 89 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 89 ~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
.-.+..|++++. .+++...++.|..||..++.. ..+ .
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~-~ 51 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------------------QRV-T 51 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------------------EEE-E
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEE-e
Confidence 346889999654 556666789999999875321 111 1
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCC---------
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD--------- 236 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d--------- 236 (387)
....+.++++.+++ +++++ . +..|.+||..+++...+..... ....++.++++| +++++++...+
T Consensus 52 ~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 52 MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCT
T ss_pred CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccC
Confidence 24578999999998 54444 3 5689999988766221211111 123478899999 88876654332
Q ss_pred CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC-CCCceeccCCCCCCCCceeee
Q 016547 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~ 315 (387)
..-.+|.+... ++ +..+...-...+.++|+|+++.++++.+.++.|.+||+. ..+... ....+.
T Consensus 128 ~~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~ 192 (297)
T 3g4e_A 128 HQGALYSLFPD-----HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVY 192 (297)
T ss_dssp TCEEEEEECTT-----SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEE
T ss_pred CCcEEEEEECC-----CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEE
Confidence 23456655531 22 222333334568999999999888888888999999984 212110 012233
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
.+..+...+..+++.++|...+ +.. .++.|..||.. +++.+..+..+...+++++|.
T Consensus 193 ~~~~~~~~p~g~~~d~~G~lwv-a~~-------~~~~v~~~d~~------tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 193 KLEKEEQIPDGMCIDAEGKLWV-ACY-------NGGRVIRLDPV------TGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp ECCGGGCEEEEEEEBTTSCEEE-EEE-------TTTEEEEECTT------TCCEEEEEECSSSBEEEEEEE
T ss_pred ECCCCCCCCCeeEECCCCCEEE-EEc-------CCCEEEEEcCC------CceEEEEEECCCCCceEEEEe
Confidence 3344456778999999986544 332 23789999988 688888888777789999996
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=3.9e-11 Score=102.31 Aligned_cols=243 Identities=10% Similarity=-0.011 Sum_probs=151.0
Q ss_pred EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-------CCCceEEEEECCC
Q 016547 36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-------QDNAEFALAMCPT 98 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~~v~~~~~~~~ 98 (387)
.++++| +++.|..+. .++.|.+||..+.+ .+..+... .. .-..+.|+||
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~------------~~~~i~~~~~~~~~~g~-~p~~~~~spD 135 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL------------PIADIELPDAPRFDVGP-YSWMNANTPN 135 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCc------------EEEEEECCCccccccCC-CccceEECCC
Confidence 899999 777777764 36789999998773 22222211 01 1248999999
Q ss_pred CCEEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 99 EPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 99 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
|++|+++.. +++|.++| .+++.... .+.. . .++.
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~~~---------------------------------------~i~~-~---~~~~ 171 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSDDQ---------------------------------------LLSS-P---TCYH 171 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEEeE---------------------------------------EcCC-C---ceEE
Confidence 999998764 57899999 76533211 0111 1 1245
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEee-----ccCCC-eeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 250 (387)
+.|+++..+++.+.||.+.++|. +++. ..... ....+ .....+.+ ++..++..+..+.+.+.|+....
T Consensus 172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~-- 245 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAG-- 245 (373)
T ss_pred EEeCCCceEEEEcCCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCc--
Confidence 56776667788889999999999 6652 21111 11112 12345666 44444444578899999987521
Q ss_pred CCCCceEEecc----------ccceEEEEEEcCCCCeeEEEec---------CCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547 251 GVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPA 311 (387)
Q Consensus 251 ~~~~~~~~~~~----------~~~~i~~~~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 311 (387)
...+..+.. .......++++|+++.++++.. .++.|.++|+.+.
T Consensus 246 --~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--------------- 308 (373)
T 2mad_H 246 --ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------------- 308 (373)
T ss_pred --ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------------
Confidence 112222211 1122445789999998776553 2357999999875
Q ss_pred eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhh
Q 016547 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE 372 (387)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~ 372 (387)
+.+..+. -......++|+||++++++++. ..++.|.+||+. +++.+.+
T Consensus 309 ~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~------~~~~~V~ViD~~------t~~vv~~ 356 (373)
T 2mad_H 309 QTSSQIS-LGHDVDAISVAQDGGPDLYALS------AGTEVLHIYDAG------AGDQDQS 356 (373)
T ss_pred EEEEEEE-CCCCcCeEEECCCCCeEEEEEc------CCCCeEEEEECC------CCCEEee
Confidence 2333332 2235789999999995444332 235999999999 6777766
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=2.3e-10 Score=94.93 Aligned_cols=227 Identities=6% Similarity=-0.050 Sum_probs=151.9
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~ 109 (387)
+...+.++++.+ +++++++...++.|..||.. ++. ....+.... ..+..+++.++|+++++...++
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~-----------~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~ 125 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF-----------TEYPLPQPD-SGPYGITEGLNGDIWFTQLNGD 125 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-----------EEEECSSTT-CCEEEEEECSTTCEEEEETTTT
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe-----------EEecCCCCC-CCCccceECCCCCEEEEccCCC
Confidence 446789999988 77888777778889999987 411 111111122 2478999999999888877788
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|..+|.. +.... ..+......+.++++.+++ +++++..
T Consensus 126 ~i~~~~~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~ 164 (300)
T 2qc5_A 126 RIGKLTAD-GTIYE---------------------------------------YDLPNKGSYPAFITLGSDN-ALWFTEN 164 (300)
T ss_dssp EEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred eEEEECCC-CCEEE---------------------------------------ccCCCCCCCceeEEECCCC-CEEEEec
Confidence 99999875 21110 0111223467899999998 6777777
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceEEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLC 268 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~ 268 (387)
.++.|..+|. +++. ...........+..+++++ +++++++....+.|..||.. +..... +......+.+
T Consensus 165 ~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 165 QNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHA 234 (300)
T ss_dssp TTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEE
T ss_pred CCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceE
Confidence 7889999998 4441 1122223445788999999 88877776667889999873 333222 2334566889
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
+++.++|. ++++...++.|..||... .. ...........+.++++.++|..++
T Consensus 235 i~~d~~g~-l~v~~~~~~~i~~~~~~g--~~-------------~~~~~~~~~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 235 ITAGKNSE-IWFTEWGANQIGRITNDN--TI-------------QEYQLQTENAEPHGITFGKDGSVWF 287 (300)
T ss_dssp EEECSTTC-EEEEETTTTEEEEECTTS--CE-------------EEEECCSTTCCCCCEEECTTSCEEE
T ss_pred EEECCCCC-EEEeccCCCeEEEECCCC--cE-------------EEEECCccCCccceeEeCCCCCEEE
Confidence 99999998 666666678999999842 11 0111222345688999999987555
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=2.8e-12 Score=119.03 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=155.0
Q ss_pred CCCcEEEEEecCCCCcEEEE-----ecCCCcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEE
Q 016547 30 HPGEVNRIRELPQNTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~ 103 (387)
|...+..++|+| ++++||- |+...+|++||+++++ .+. .+.... ...++|+ ||+.|+
T Consensus 127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~------------~~~~~~~~~k---~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQ------------PLETPLKDVK---FSGISWL-GNEGFF 189 (693)
T ss_dssp SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCS------------EEEEEEEEEE---SCCCEEE-TTTEEE
T ss_pred CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCC------------CCccccCCce---eccEEEe-CCCEEE
Confidence 556788999999 8887773 3334679999999983 222 122111 2477899 999998
Q ss_pred EecCCC-------------eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CC
Q 016547 104 SGGKDK-------------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HE 169 (387)
Q Consensus 104 s~~~d~-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 169 (387)
.++.+. .|.+|++.+..... ..+..... |.
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~------------------------------------~~v~~~~~~~~ 233 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDD------------------------------------RLVFGAIPAQH 233 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGC------------------------------------EEEESCSGGGC
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccc------------------------------------eEEEecCCCCC
Confidence 887764 38888886542110 01111122 44
Q ss_pred CCeEEEEEccCCCeeEEEec---CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCC---CeEEEE
Q 016547 170 DTVEDVTFCPSSAQEFCSVG---DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSAD---NSVRMF 242 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d---g~i~~~ 242 (387)
..+..+.|+|++..++++.+ .+..|.++|+.++... ...+..+....... +++ ++..| +....+ +.|..+
T Consensus 234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~ 310 (693)
T 3iuj_A 234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-LLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTV 310 (693)
T ss_dssp CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-CEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-eEEEeCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEE
Confidence 55788999999955555543 2358999999876422 33444455555554 555 44444 444443 578888
Q ss_pred EeccCCCCCCCCc--eEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeee-
Q 016547 243 DRRNLTSNGVGSP--INKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH- 317 (387)
Q Consensus 243 d~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (387)
|+.+ +.. ...+..|...+. .|++++++|+++...++ .|++||+... . ...+
T Consensus 311 d~~~------~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~---------------~~~l~ 366 (693)
T 3iuj_A 311 DAAN------PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-R---------------VREVA 366 (693)
T ss_dssp ETTS------CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-E---------------EEEEC
T ss_pred eCCC------CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-e---------------eEEee
Confidence 8876 332 345555655554 88999998776666666 5888888742 1 1111
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....+.+..+.++++++.++++.+. -..-++|..||+.
T Consensus 367 ~p~~~~~~~~~~~~d~~~l~~~~ss----~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 367 LPGLGSVSGFNGKHDDPALYFGFEN----YAQPPTLYRFEPK 404 (693)
T ss_dssp CSSSSEEEECCCCTTCSCEEEEEEC----SSSCCEEEEECTT
T ss_pred cCCCceEEeeecCCCCCEEEEEecC----CCCCCEEEEEECC
Confidence 1234467788888999888877653 2344789999986
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=3.9e-12 Score=107.01 Aligned_cols=243 Identities=9% Similarity=0.008 Sum_probs=153.6
Q ss_pred CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
.+++|.++|.++++....+....... .-+.....+.+. +++..++...++.|.+||..+++..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~-------~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~--------- 77 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGF-------KLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV--------- 77 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSS-------CCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE---------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCc-------ccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE---------
Confidence 48899999999884322211000000 011134567774 3445556666899999999865332
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 211 (387)
..+. .......+++++++ .++++...++.|.+||..+.+ ....+.
T Consensus 78 -------------------------------~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~--~~~~i~ 122 (328)
T 3dsm_A 78 -------------------------------GRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE--ITGYIE 122 (328)
T ss_dssp -------------------------------EEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE--EEEEEE
T ss_pred -------------------------------EEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe--EEEEEE
Confidence 2222 23567889999988 766666589999999998876 333333
Q ss_pred ccC-----CCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547 212 AHD-----ADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285 (387)
Q Consensus 212 ~~~-----~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d 285 (387)
... .....+++ . ++.++++.. .++.|.++|..+ ++.+..+.. ......++++|+|+ +++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t------~~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~ 192 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET------DKVVDELTI-GIQPTSLVMDKYNK-MWTITDGG 192 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT------TEEEEEEEC-SSCBCCCEECTTSE-EEEEBCCB
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC------CeEEEEEEc-CCCccceEEcCCCC-EEEEECCC
Confidence 222 15667777 4 555555544 489999999998 676666654 33456899999998 45565544
Q ss_pred ----------CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC-CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547 286 ----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ 354 (387)
Q Consensus 286 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~ 354 (387)
+.|.++|..+.. ....+... ......++|+|++++++++. +.|.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~---------------v~~~~~~~~g~~p~~la~~~d~~~lyv~~----------~~v~ 247 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFT---------------VEKQFKFKLGDWPSEVQLNGTRDTLYWIN----------NDIW 247 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTE---------------EEEEEECCTTCCCEEEEECTTSCEEEEES----------SSEE
T ss_pred ccCCccccCCceEEEEECCCCe---------------EEEEEecCCCCCceeEEEecCCCEEEEEc----------cEEE
Confidence 789999988642 22222211 23679999999999888532 2899
Q ss_pred EEecCCCcccccchhhh--hhhccCceEEEeeecC
Q 016547 355 IWRMSDLIYRPQDEVLA--ELEKFKAHVISCTSKP 387 (387)
Q Consensus 355 iw~~~~~~~~~~~~~~~--~~~~~~~~v~~~~f~P 387 (387)
+||.. +++... .+.........++++|
T Consensus 248 ~~d~~------t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 248 RMPVE------ADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp EEETT------CSSCCSSCSBCCCSSCEEEEEECT
T ss_pred EEECC------CCceeeeeeecCCCCceEEEEEcC
Confidence 99987 444321 1111235567777765
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=8.2e-12 Score=104.46 Aligned_cols=225 Identities=11% Similarity=0.089 Sum_probs=143.5
Q ss_pred eEEEEECCCCCEEEE-------ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547 90 EFALAMCPTEPYVLS-------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 162 (387)
Q Consensus 90 v~~~~~~~~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (387)
..+++|+++++.+++ +..++.|..||..++.......
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------------------------------ 63 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------------------------------------ 63 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------------------------------------
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe------------------------------------
Confidence 479999999988887 6778999999976543210000
Q ss_pred eeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCCceeEE-ee----ccCCCeeEEEecCCCCCeEEEeeCC
Q 016547 163 GIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKV-EK----AHDADLHCVDWNPLDDNLILTGSAD 236 (387)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~~l~~~~~d 236 (387)
....++...+.++++.++ + +++++.. .+.|.+||.. ++ .... .. .....+..+++++ +++++++...+
T Consensus 64 ~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~ 137 (314)
T 1pjx_A 64 PEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAG 137 (314)
T ss_dssp CEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBC
T ss_pred cccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CC--EEEEEeccCCCccccCCcCEEECC-CCCEEEEecCc
Confidence 000123456889999999 6 6555554 4479999987 55 2221 11 1123578999999 88877776655
Q ss_pred ---------------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc----CCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 237 ---------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS----PDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 237 ---------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+.|..||.. ++.. .+..+......++|+ |+++.++++...++.|.+||+...+
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-------g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g 209 (314)
T 1pjx_A 138 EVAPADYTRSMQEKFGSIYCFTTD-------GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209 (314)
T ss_dssp BCTTSCCCBTTSSSCEEEEEECTT-------SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred ccccccccccccCCCCeEEEECCC-------CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence 456656543 2222 222233456889999 9997777777778999999986312
Q ss_pred ceeccCCCCCCCCceeeeeeccCC-CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547 298 KKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF 376 (387)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 376 (387)
.... ......+..+. ..+..++++++|..++ + ...++.|.+||.. +++.+..+..+
T Consensus 210 ~~~~---------~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~-------~~~~~~i~~~d~~------~g~~~~~~~~~ 266 (314)
T 1pjx_A 210 KIEN---------KKVWGHIPGTHEGGADGMDFDEDNNLLV-A-------NWGSSHIEVFGPD------GGQPKMRIRCP 266 (314)
T ss_dssp EEEE---------EEEEEECCCCSSCEEEEEEEBTTCCEEE-E-------EETTTEEEEECTT------CBSCSEEEECS
T ss_pred cccc---------ceEEEECCCCCCCCCCceEECCCCCEEE-E-------EcCCCEEEEEcCC------CCcEeEEEeCC
Confidence 1100 01223334444 5678899999987555 2 2234799999987 56665666656
Q ss_pred CceEEEeeecC
Q 016547 377 KAHVISCTSKP 387 (387)
Q Consensus 377 ~~~v~~~~f~P 387 (387)
...+.+++|+|
T Consensus 267 ~~~~~~i~~~~ 277 (314)
T 1pjx_A 267 FEKPSNLHFKP 277 (314)
T ss_dssp SSCEEEEEECT
T ss_pred CCCceeEEECC
Confidence 67788888865
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=6.3e-11 Score=99.54 Aligned_cols=232 Identities=8% Similarity=-0.011 Sum_probs=145.7
Q ss_pred cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547 33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 112 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~ 112 (387)
-..+..|+|.++.++++...++.|..||.++++ . ..+. ... .+.++.|+++|+++++. . ..|.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~v~~i~~~~dg~l~v~~-~-~gl~ 112 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR------------K-TVHA-LPF-MGSALAKISDSKQLIAS-D-DGLF 112 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------E-EEEE-CSS-CEEEEEEEETTEEEEEE-T-TEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------E-EEEE-CCC-cceEEEEeCCCeEEEEE-C-CCEE
Confidence 346788999667788888888999999988762 1 1222 222 58899999999887765 3 4588
Q ss_pred EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC--
Q 016547 113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-- 190 (387)
Q Consensus 113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 190 (387)
+||..++........ ........+.++.+.|+| +++++...
T Consensus 113 ~~d~~~g~~~~~~~~------------------------------------~~~~~~~~~~~i~~d~~G-~l~v~~~~~~ 155 (326)
T 2ghs_A 113 LRDTATGVLTLHAEL------------------------------------ESDLPGNRSNDGRMHPSG-ALWIGTMGRK 155 (326)
T ss_dssp EEETTTCCEEEEECS------------------------------------STTCTTEEEEEEEECTTS-CEEEEEEETT
T ss_pred EEECCCCcEEEEeeC------------------------------------CCCCCCCCCCCEEECCCC-CEEEEeCCCc
Confidence 999865432110000 000112358899999998 55554432
Q ss_pred ----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEec--cC-CCCCCCCceEEeccc
Q 016547 191 ----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRR--NL-TSNGVGSPINKFEGH 262 (387)
Q Consensus 191 ----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~--~~-~~~~~~~~~~~~~~~ 262 (387)
.+.|..++ +++ ...+.........++|+| +++.++.+ +.++.|.+||.. +. .. ...+.+..+...
T Consensus 156 ~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~ 228 (326)
T 2ghs_A 156 AETGAGSIYHVA--KGK---VTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGI 228 (326)
T ss_dssp CCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTS
T ss_pred CCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcc-cCceEEEECCCC
Confidence 24555555 333 222223334577999999 88766544 557899999986 31 10 000122233333
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCCCeEEEEec
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVS 341 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~s~s 341 (387)
...+..+++.++|. ++++...++.|.+||... + .+..+..+...+++++|+ ++++.|+++..
T Consensus 229 ~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g--~--------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 229 KGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG--N--------------HIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SSEEEEEEECTTSC-EEEEEETTTEEEEECTTC--C--------------EEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC--C--------------EEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 45678899999997 455555578899999842 1 233344455679999998 88888877655
Q ss_pred C
Q 016547 342 D 342 (387)
Q Consensus 342 ~ 342 (387)
.
T Consensus 292 ~ 292 (326)
T 2ghs_A 292 R 292 (326)
T ss_dssp C
T ss_pred C
Confidence 3
No 209
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=5.2e-12 Score=103.11 Aligned_cols=191 Identities=8% Similarity=0.020 Sum_probs=135.1
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC-CCeEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVT 176 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 176 (387)
.++.|++++.|+.|.+||.++++.. ..+..+. ..+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~----------------------------------------w~~~~~~~~~~~~~~ 43 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV----------------------------------------WEYPLEKGWECNSVA 43 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE----------------------------------------EEEECCTTCCCCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE----------------------------------------EEeCCCccCCCcCeE
Confidence 4678999999999999998766443 2333333 4678899
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-CCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCC
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGS 254 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~ 254 (387)
+.|+| ++++ +.++.|..||. +++ .+..+..+ ...+.++.+.+ +++++++.+. ++.|..+|. + ++
T Consensus 44 ~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~------Gk 109 (276)
T 3no2_A 44 ATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-K------GE 109 (276)
T ss_dssp ECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-T------SC
T ss_pred ECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-C------CC
Confidence 99998 6677 35788999998 666 45555543 35788899999 9999999887 777777775 3 66
Q ss_pred ceEEecc------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547 255 PINKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 328 (387)
Q Consensus 255 ~~~~~~~------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (387)
.+.++.. +......+++.++|.+ +++...++.|..||.. ++ .+..+... ..+.++.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~-G~---------------~~w~~~~~-~~~~~~~ 171 (276)
T 3no2_A 110 VLSKTEFETGIERPHAQFRQINKNKKGNY-LVPLFATSEVREIAPN-GQ---------------LLNSVKLS-GTPFSSA 171 (276)
T ss_dssp EEEEEEECCSCSSGGGSCSCCEECTTSCE-EEEETTTTEEEEECTT-SC---------------EEEEEECS-SCCCEEE
T ss_pred EEEEEeccCCCCcccccccCceECCCCCE-EEEecCCCEEEEECCC-CC---------------EEEEEECC-CCcccee
Confidence 6666541 2223456678899985 5688889999999987 42 23333332 3456778
Q ss_pred EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547 329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE 374 (387)
Q Consensus 329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~ 374 (387)
..+++..++ +++.++.|..+|.. +++.+.++.
T Consensus 172 ~~~~g~~~v--------~~~~~~~v~~~d~~------tG~~~w~~~ 203 (276)
T 3no2_A 172 FLDNGDCLV--------ACGDAHCFVQLNLE------SNRIVRRVN 203 (276)
T ss_dssp ECTTSCEEE--------ECBTTSEEEEECTT------TCCEEEEEE
T ss_pred EcCCCCEEE--------EeCCCCeEEEEeCc------CCcEEEEec
Confidence 888888776 44455789999988 566655543
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=7e-12 Score=117.44 Aligned_cols=222 Identities=11% Similarity=0.007 Sum_probs=136.2
Q ss_pred ceEEEEECCCCCEEEEecCC-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547 89 AEFALAMCPTEPYVLSGGKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 163 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (387)
.+..+.|||||++|+.++.+ ..|++||+.++....
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~---------------------------------------- 203 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA---------------------------------------- 203 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------------------------------------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------------------------------------
Confidence 57899999999999876543 469999998653211
Q ss_pred eecCCCCCeEEEEEccCCCeeEEEecCCC-------------eEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCC
Q 016547 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDN 228 (387)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 228 (387)
...+...+..++|+|| ..++++..... .|++|++.++.......+ ..+...+..+.|+| +++
T Consensus 204 -~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~ 280 (741)
T 1yr2_A 204 -DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGR 280 (741)
T ss_dssp -EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSC
T ss_pred -ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCC
Confidence 0011112357899999 56555543222 389999877652212222 22334588999999 999
Q ss_pred eEEEeeCCC-----eEEEEEeccCCCCCCC--CceEEeccccceEEEEEEcCCCCeeEEEecC---CCeEEEEeCCCCCc
Q 016547 229 LILTGSADN-----SVRMFDRRNLTSNGVG--SPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGK 298 (387)
Q Consensus 229 ~l~~~~~dg-----~i~~~d~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~---d~~i~vwd~~~~~~ 298 (387)
+|+..+.++ .|.+||+.+ + .+...+..+...+.... +|+|+.+++.... ++.|.+||+....
T Consensus 281 ~l~~~~~~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~- 352 (741)
T 1yr2_A 281 WVVITSSEGTDPVNTVHVARVTN------GKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST- 352 (741)
T ss_dssp EEEEEEECTTCSCCEEEEEEEET------TEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-
T ss_pred EEEEEEEccCCCcceEEEEECCC------CCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-
Confidence 888877654 899999986 4 31445544444444443 4888876544432 4569999987631
Q ss_pred eeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cC
Q 016547 299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FK 377 (387)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~ 377 (387)
. .....+..+...+..++|. +..++++...| +..+||.++. .++.+..+.. +.
T Consensus 353 ~------------~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~~~~ 406 (741)
T 1yr2_A 353 P------------RFDTVVPESKDNLESVGIA--GNRLFASYIHD-------AKSQVLAFDL-----DGKPAGAVSLPGI 406 (741)
T ss_dssp C------------EEEEEECCCSSEEEEEEEE--BTEEEEEEEET-------TEEEEEEEET-----TSCEEEECBCSSS
T ss_pred c------------ccEEEecCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCceeeccCCCC
Confidence 0 1122223444556677776 55677766555 7777776651 2334444443 35
Q ss_pred ceEEEeeecC
Q 016547 378 AHVISCTSKP 387 (387)
Q Consensus 378 ~~v~~~~f~P 387 (387)
+.|..++++|
T Consensus 407 ~~v~~~~~s~ 416 (741)
T 1yr2_A 407 GSASGLSGRP 416 (741)
T ss_dssp CEEEEEECCB
T ss_pred eEEEEeecCC
Confidence 6677777764
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=1.5e-10 Score=96.27 Aligned_cols=230 Identities=9% Similarity=0.063 Sum_probs=146.6
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
++...........|.|+...+++++..++.|..|+.. + . ...+..+.. .+..++++++|+++++.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g------------~-~~~~~~~~~-~~~gl~~d~dG~l~v~~ 103 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G------------T-VDVLLDATA-FTNGNAVDAQQRLVHCE 103 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S------------C-EEEEEESCS-CEEEEEECTTSCEEEEE
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C------------C-EEEEeCCCC-ccceeeECCCCCEEEEE
Confidence 3444556678899999433478888889999999873 3 1 233444444 57899999999977766
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCCCee
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 184 (387)
..++.|..|+.+ +...... ....+ ....+.++++.++| .+
T Consensus 104 ~~~~~v~~~~~~-g~~~~~~-------------------------------------~~~~~~~~~~~~~i~~d~dG-~l 144 (305)
T 3dr2_A 104 HGRRAITRSDAD-GQAHLLV-------------------------------------GRYAGKRLNSPNDLIVARDG-AI 144 (305)
T ss_dssp TTTTEEEEECTT-SCEEEEE-------------------------------------CEETTEECSCCCCEEECTTS-CE
T ss_pred CCCCEEEEECCC-CCEEEEE-------------------------------------eccCCCccCCCCCEEECCCC-CE
Confidence 666889999875 2111000 00001 12346779999998 66
Q ss_pred EEE----ecC-------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------CeEEE
Q 016547 185 FCS----VGD-------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRM 241 (387)
Q Consensus 185 l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~~ 241 (387)
+++ |.. .+.|..+|..+++.. .. . .......++|+| +++.|+.+... +.|..
T Consensus 145 ~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~-~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~ 219 (305)
T 3dr2_A 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RM-A-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITA 219 (305)
T ss_dssp EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EE-E-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEE
T ss_pred EEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EE-e-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEE
Confidence 765 332 356788887666622 22 2 334678899999 89877777665 78999
Q ss_pred EEeccCCCCCCCCceE---Ee-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547 242 FDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 317 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (387)
||+.. .. +. .+ .........+++.++|+ |.++ ..+ .|.+|+.... .+..+
T Consensus 220 ~~~~~------~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~-gv~~~~~~g~----------------~~~~~ 273 (305)
T 3dr2_A 220 FAWRD------GA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGT-GVCVFDSDGQ----------------LLGHI 273 (305)
T ss_dssp EEEET------TE-EEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSS-EEEEECTTSC----------------EEEEE
T ss_pred EEecC------CC-ccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCC-cEEEECCCCC----------------EEEEE
Confidence 99875 22 11 11 11223445789999998 5533 334 5999997531 23333
Q ss_pred ccCCCCeeEEEEccCCCeEEEEec
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
..+. .+..++|+++++.|.++++
T Consensus 274 ~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 274 PTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp ECSS-CCCEEEECTTSCEEEEEET
T ss_pred ECCC-ceeEEEEeCCCCEEEEEcC
Confidence 3333 5889999999888886543
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=5.2e-11 Score=103.02 Aligned_cols=208 Identities=10% Similarity=0.077 Sum_probs=129.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
....++|+++++++++...++.|+.||..++... .....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~----------------------------------------~~~~~- 170 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT----------------------------------------TVHPG- 170 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE----------------------------------------EEEET-
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE----------------------------------------Eeecc-
Confidence 3579999999998788777899999998754321 11111
Q ss_pred CCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeEEe---ec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVE---KA-HDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
..... ++|++++ +.++++..++ .|.+++...... .... .. ....+.+++++| ++..|+++..++.|+.|
T Consensus 171 ~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~ 245 (409)
T 3hrp_A 171 FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRF 245 (409)
T ss_dssp CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEE
T ss_pred CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEE
Confidence 22233 8999998 5666666655 799999876652 2222 12 456788999999 55556667778999999
Q ss_pred EeccCCCCCCCCceEEe-----ccccceE--EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 243 DRRNLTSNGVGSPINKF-----EGHSAAV--LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 243 d~~~~~~~~~~~~~~~~-----~~~~~~i--~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
|... .. ...+ .++...- ..++|+|++..|+++...++.|+.|+.................... .
T Consensus 246 d~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg--~ 316 (409)
T 3hrp_A 246 NVKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDG--L 316 (409)
T ss_dssp ETTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCE--E
T ss_pred ECCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCC--c
Confidence 9876 33 2222 1111111 2899999766688888889999999976521110000000000000 0
Q ss_pred eeccCCCCeeEEEEccCCCeEEEEecCCCCCCC-CCceEEEEecC
Q 016547 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-GGGTLQIWRMS 359 (387)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~-~dg~i~iw~~~ 359 (387)
.....-.....++++|+|. ++++ -. .++.|+.|++.
T Consensus 317 ~~~~~~~~P~gia~d~dG~-lyva-------d~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 317 REEALFAQPNGMTVDEDGN-FYIV-------DGFKGYCLRKLDIL 353 (409)
T ss_dssp GGGCBCSSEEEEEECTTCC-EEEE-------ETTTTCEEEEEETT
T ss_pred ccccEeCCCeEEEEeCCCC-EEEE-------eCCCCCEEEEEECC
Confidence 0001123578999999998 4443 33 45899999976
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.43 E-value=4.6e-11 Score=100.60 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=150.9
Q ss_pred EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC------CCceEEEEECCCC
Q 016547 36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE 99 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------~~~v~~~~~~~~~ 99 (387)
.++++| +++++.+++ .++.|.+||..+. +.+..+.... +..-..+.++|||
T Consensus 82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence 399999 676665554 3678999999998 4444443211 0112479999999
Q ss_pred CEEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 100 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 100 ~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
++++++.. ++.|.++|+.+.+... .+.. .. +...
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~----------------------------------------tI~v--~g--~~~~ 184 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKR----------------------------------------MLDV--PD--CYHI 184 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEE----------------------------------------EEEC--CS--EEEE
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEE----------------------------------------EEEC--CC--ccee
Confidence 99888764 6899999998754322 1111 01 1122
Q ss_pred ccCCCeeEEEecCCCeEEEEEccC-CCCceeEEeecc----CCCe-eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH----DADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----~~~i-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
.|.+.+.+++.+.||.+.+.++.. ++. ......+ ..++ ....|.+.++++++ .+.+|.|.+.|+....
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--- 258 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--- 258 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS---
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeE--EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc---
Confidence 354445677778889988888876 442 1111111 1122 12455432665554 5568999999997521
Q ss_pred CCCceEEec----------cccceEEEEEEcCCCCeeEEEecC---------CCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547 252 VGSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAG 312 (387)
Q Consensus 252 ~~~~~~~~~----------~~~~~i~~~~~~~~~~~ll~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 312 (387)
.+.+..+. ........++++++++.++++-.. .+.|.+.|+.+...
T Consensus 259 -~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-------------- 323 (386)
T 3sjl_D 259 -AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-------------- 323 (386)
T ss_dssp -CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--------------
T ss_pred -ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE--------------
Confidence 11222221 011223357779999988766431 25799999988522
Q ss_pred eeeeeccCCCCeeEEEEccCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547 313 LFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK 375 (387)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 375 (387)
+..+.- ...+.+++++++++ .|+++. ..++.|.++|.. +++.++++..
T Consensus 324 -~~~i~v-g~~~~~lavs~D~~~~ly~tn-------~~~~~VsViD~~------t~k~~~~i~~ 372 (386)
T 3sjl_D 324 -LAKFEM-GHEIDSINVSQDEKPLLYALS-------TGDKTLYIHDAE------SGEELRSVNQ 372 (386)
T ss_dssp -EEEEEE-EEEECEEEECSSSSCEEEEEE-------TTTTEEEEEETT------TCCEEEEECC
T ss_pred -EEEEEC-CCCcceEEECCCCCeEEEEEc-------CCCCeEEEEECC------CCcEEEEecC
Confidence 222221 13678999999997 566533 345999999999 7888777653
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=2e-10 Score=96.51 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=136.4
Q ss_pred eEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 90 EFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 90 v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
..+..|+|++. .+++...++.|..||..++.. ..+. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~~-~ 88 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-----------------------------------------TVHA-L 88 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------------------------------------EEEE-C
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEEE-C
Confidence 35788999755 556666788999999875321 1111 2
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeC------CCeEE
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSA------DNSVR 240 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~------dg~i~ 240 (387)
...+.++.|.+++ +++++. . ..|.+||..+++......... ....++.++++| +++++++... .+.|.
T Consensus 89 ~~~v~~i~~~~dg-~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDS-KQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETT-EEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCC-eEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEE
Confidence 3568999999998 666554 3 359999988776211111111 123578999999 8887665542 24455
Q ss_pred EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC-CCC-ceeccCCCCCCCCceeeeeec
Q 016547 241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVG-KKVEQGPRTTNYPAGLFFQHA 318 (387)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (387)
.++ . ++... +.........++|+|+++.++++.+.++.|.+||+. ..+ ... ....+..+.
T Consensus 165 ~~~--~------g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~~~ 226 (326)
T 2ghs_A 165 HVA--K------GKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFIDST 226 (326)
T ss_dssp EEE--T------TEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEECT
T ss_pred EEe--C------CcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEECC
Confidence 555 3 43322 222334567899999999777777778999999986 111 110 011222333
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
.....+..+++.++|..++++ . .++.|.+|+.. ++.+..+..+...+++++|.
T Consensus 227 ~~~~~p~gi~~d~~G~lwva~-~-------~~~~v~~~d~~-------g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 227 GIKGGMDGSVCDAEGHIWNAR-W-------GEGAVDRYDTD-------GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp TSSSEEEEEEECTTSCEEEEE-E-------TTTEEEEECTT-------CCEEEEEECSCSBEEEEEEE
T ss_pred CCCCCCCeeEECCCCCEEEEE-e-------CCCEEEEECCC-------CCEEEEEECCCCCcEEEEEe
Confidence 344567889999998755532 1 23789999875 44555566566678888886
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=3.8e-11 Score=111.48 Aligned_cols=201 Identities=11% Similarity=0.121 Sum_probs=127.1
Q ss_pred ceEEEEECCCCCEEEE-----ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547 89 AEFALAMCPTEPYVLS-----GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 163 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (387)
.+..+.|||||++|+. |+.+..|++||+.++.... .
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------------------------------~ 170 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------------------------------T 170 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------------------------------E
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------------------------------c
Confidence 5788999999999883 3444689999998753211 0
Q ss_pred eecCCCCCeEEEEEccCCCeeEEEecCCC-------------eEEEEEccCCCCc--eeEEeec-cCCCeeEEEecCCCC
Q 016547 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSP--VIKVEKA-HDADLHCVDWNPLDD 227 (387)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------~i~iwd~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~ 227 (387)
.+.. .....++|+ |+ +.|+.++.+. .|++|++.+.... .+..... |......+.|+| ++
T Consensus 171 ~~~~--~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg 245 (693)
T 3iuj_A 171 PLKD--VKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DD 245 (693)
T ss_dssp EEEE--EESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TS
T ss_pred ccCC--ceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CC
Confidence 1111 112567899 88 5555555543 4999998876532 2222333 455678899999 88
Q ss_pred CeEEEeeC----CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC---CeEEEEeCCCCCcee
Q 016547 228 NLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKV 300 (387)
Q Consensus 228 ~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~~~ 300 (387)
++|+.... ++.|.++|+.+. ......+..+....... +++++..+++....+ +.|..+|+......
T Consensus 246 ~~l~~~~~~~~~~~~i~~~d~~~~-----~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~- 318 (693)
T 3iuj_A 246 RFLLISAANSTSGNRLYVKDLSQE-----NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA- 318 (693)
T ss_dssp CEEEEEEESSSSCCEEEEEETTST-----TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-
T ss_pred CEEEEEEccCCCCcEEEEEECCCC-----CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-
Confidence 88765443 358999998762 12344555555554444 667777666666544 67999998874321
Q ss_pred ccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....+..|...+. .|++++++|+++...+ ....|++|++.
T Consensus 319 ------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~ 358 (693)
T 3iuj_A 319 ------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYE 358 (693)
T ss_dssp ------------GCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTT
T ss_pred ------------ccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECC
Confidence 0122344555554 8999999988766544 11268888887
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=5.3e-09 Score=89.19 Aligned_cols=269 Identities=7% Similarity=-0.032 Sum_probs=154.2
Q ss_pred CCcEEEEecC--CC---cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------C
Q 016547 43 NTKIVATHTD--SP---DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------K 107 (387)
Q Consensus 43 ~~~~l~t~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~ 107 (387)
+++++.+... .. +|.++|..++ +.+..+..-.. + .+.++|||++++.+. .
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~------------~~~~~i~~g~~-p--~i~~spDg~~lyv~n~~~~~~~rg~~ 95 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSG------------SILGHVNGGFL-P--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCC------------eEEEEecCCCC-C--CeEECCCCCEEEEEeccccccccCCC
Confidence 6666655543 33 8899999888 44444443332 2 899999999998875 3
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
++.|.+||..+.......... .. .... +......+.|+|+| ++|++
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~-------------------------------~~-~~~~-~g~~p~~~~~spDG-~~l~v 141 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELP-------------------------------DA-PRFD-VGPYSWMNANTPNN-ADLLF 141 (373)
T ss_pred CCeEEEEECCCCcEEEEEECC-------------------------------Cc-cccc-cCCCccceEECCCC-CEEEE
Confidence 678999999754322111000 00 0000 01234578999999 55665
Q ss_pred ec-C-CCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec----
Q 016547 188 VG-D-DSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---- 260 (387)
Q Consensus 188 ~~-~-dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---- 260 (387)
+. . ++.|.++| .+++ .... +. ... ++.+.|...+.+++.+.||.+.++|. + ++.+....
T Consensus 142 ~n~~~~~~v~viD-~t~~--~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~------g~~~~~~~~~~~ 207 (373)
T 2mad_H 142 FQFAAGPAVGLVV-QGGS--SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A------GGAAGAGLVGAM 207 (373)
T ss_pred EecCCCCeEEEEE-CCCC--EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C------CcEEEEEecccc
Confidence 54 3 58899999 8876 3433 32 222 24455534567777888999999999 6 55443221
Q ss_pred -cccce-EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 261 -GHSAA-VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 261 -~~~~~-i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
....+ .....+.+++..++... .++.+.+.|+.......... ... .. ...............++++|+++.+++
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~-~~~-~~-~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAP-IDA-LS-GGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeee-eee-cC-CcccccceecCceEeEEECCCCCEEEE
Confidence 11112 23345666665544343 57899999997532211000 000 00 000000001223445789999998887
Q ss_pred EecCCCCCC----CCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 339 SVSDDCDST----GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 339 s~s~d~~tg----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
+.... .. ..++.|.++|+. +++.+.++. ......+++|+|
T Consensus 284 ~~~~~--~~~~~~~~~~~V~VID~~------t~~vv~~i~-~g~~p~~i~~s~ 327 (373)
T 2mad_H 284 LTSEQ--SAWKLHAAAKEVTSVTGL------VGQTSSQIS-LGHDVDAISVAQ 327 (373)
T ss_pred EeccC--CcccccCCCCeEEEEECC------CCEEEEEEE-CCCCcCeEEECC
Confidence 65421 10 124689999998 777777774 233567777775
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=9.8e-11 Score=100.44 Aligned_cols=267 Identities=9% Similarity=0.021 Sum_probs=157.9
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------CCCeEEEEEcCCCcCcc
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS 123 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~ 123 (387)
+.|.++|..+. +.+..+..-.. + .+.++|||++|+++. .++.|.++|..+.....
T Consensus 99 ~~VsVID~~t~------------~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 99 TQQFVIDGSTG------------RILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp EEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred CeEEEEECCCC------------EEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 79999999998 55555554443 4 899999999988776 36789999998875543
Q ss_pred ccCCC-----------cccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547 124 ATDPA-----------TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 192 (387)
Q Consensus 124 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 192 (387)
..... ........+..++.........+.+.+..+.+.+..+.-.. +....|++...+++.+.||
T Consensus 164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTS
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCC
Confidence 32211 11122222322322222223345555555555544443211 1234455546677777888
Q ss_pred eEEEEEccCCCCcee--EEeeccCCCe-eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-------cc
Q 016547 193 CLILWDARVGTSPVI--KVEKAHDADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-------GH 262 (387)
Q Consensus 193 ~i~iwd~~~~~~~~~--~~~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~ 262 (387)
.+.+.+..+++.... ..+.....++ ..+.+.+ ++..++..+..+.+.+.|+.... ...+..+. ..
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~----~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEG----ATFRAPIEALTEAERAD 314 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSC----EEECCCEESSCTTTGGG
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCc----eEEeeeeeecccccccc
Confidence 888888854441100 0111111111 2356788 77777777788999999986421 00111110 00
Q ss_pred ---cceEEEEEEcCCCCeeEEEec---------CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 263 ---SAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 263 ---~~~i~~~~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
......++++|++++++++.. .++.|.++|+.+.. .+..+.. ......++|+
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------------vv~~I~v-g~~P~gia~s 378 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------------RINKIEL-GHEIDSINVS 378 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------------EEEEEEE-EEEECEEEEC
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------------EEEEEEC-CCCcCeEEEc
Confidence 111123689999998876643 13579999998852 2333322 1257899999
Q ss_pred cCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547 331 ASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 373 (387)
Q Consensus 331 ~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~ 373 (387)
|+++ .++++.. .++.|.++|+. +++.++++
T Consensus 379 pDg~~~lyv~n~-------~s~~VsVID~~------t~kvv~tI 409 (426)
T 3c75_H 379 QDAEPLLYALSA-------GTQTLHIYDAA------TGEELRSV 409 (426)
T ss_dssp CSSSCEEEEEET-------TTTEEEEEETT------TCCEEEEE
T ss_pred cCCCEEEEEEcC-------CCCeEEEEECC------CCCEEEEe
Confidence 9999 6665433 34999999999 77777775
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=3.6e-10 Score=95.67 Aligned_cols=247 Identities=9% Similarity=0.038 Sum_probs=143.9
Q ss_pred CcEEEEEecCCCCcEEEEec--CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC--
Q 016547 32 GEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 107 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-- 107 (387)
..+..+++++ +++++++.. .++.++||.+.+++. ..+... . ....+|-. .+..++++++++++++-..
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~---~--~~~~~~~~-~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQ---S--GNAIITFD-TVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCC---C--SSCCCCCS-CEEEEEECSSSEEEEEECHHH
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCc---c--cCccccee-EeeEEEEcCCCcEEEEcCCCC
Confidence 6789999999 788888853 234366676653311 100000 0 00112333 5789999999876665433
Q ss_pred ---CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 108 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 108 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
++.|.+||+.++......... .....+...+..+++.++++..
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~~----------------------------------~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYLP----------------------------------PPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEECC----------------------------------TTTSCTTCCCCEEEEETTTTEE
T ss_pred cCCCCeEEEEECCCCeEEEEEECC----------------------------------hhhcccccccceEEEecCCCEE
Confidence 578999999865422111000 0001123456789999865466
Q ss_pred EEEec---CCCeEEEEEccCCCCceeEEeecc-----------------------------CCCeeEEEecCCCCCeEEE
Q 016547 185 FCSVG---DDSCLILWDARVGTSPVIKVEKAH-----------------------------DADLHCVDWNPLDDNLILT 232 (387)
Q Consensus 185 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~~l~~ 232 (387)
+++.. .++.|.+||+.+++ .......| ...+..|+++| +++.|+.
T Consensus 135 yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~ 211 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYL 211 (343)
T ss_dssp EEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEE
T ss_pred EEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEE
Confidence 67766 67899999998765 23322211 12357899999 8988888
Q ss_pred eeCCC-eEEEEEeccCCCCCC--CCceE--EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547 233 GSADN-SVRMFDRRNLTSNGV--GSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 307 (387)
Q Consensus 233 ~~~dg-~i~~~d~~~~~~~~~--~~~~~--~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 307 (387)
+..++ .+..++......... .+... ...++......++++++|. ++++...++.|.+||...+ +.
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~~-------- 281 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-AY-------- 281 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-EE--------
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-CE--------
Confidence 87766 454444332110000 00000 1112333456799999987 6778888999999998432 11
Q ss_pred CCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
..+.. ..+...+.+++|.+++..+++
T Consensus 282 ----~~~~~-~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 282 ----KLLVT-DEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp ----EEEEE-CGGGSCEEEEEECTTSCEEEE
T ss_pred ----EEEEE-CCceecCCeeEECCCCcEEEE
Confidence 11111 123456899999998765543
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=7.7e-10 Score=92.01 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=134.8
Q ss_pred ceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 89 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 89 ~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
......|+++++ .+++...++.|..|+.... ...+..
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~------------------------------------------~~~~~~ 83 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT------------------------------------------VDVLLD 83 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC------------------------------------------EEEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC------------------------------------------EEEEeC
Confidence 457899999998 5667777899999987321 123334
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-eec-cCCCeeEEEecCCCCCeEEE----eeC------
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA-HDADLHCVDWNPLDDNLILT----GSA------ 235 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~~~l~~----~~~------ 235 (387)
+...+..+++.++| +++++...++.|.+||.. ++...... ... ....++.++++| +++++++ |..
T Consensus 84 ~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp SCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSC
T ss_pred CCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCcccccccc
Confidence 45678999999998 666666667889999985 44111111 111 123467899999 8988886 432
Q ss_pred -------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC-----CCeEEEEeCCCCCceeccC
Q 016547 236 -------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEKVGKKVEQG 303 (387)
Q Consensus 236 -------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~-----d~~i~vwd~~~~~~~~~~~ 303 (387)
.+.|..+|..+ ++..... .....+.++|+|+++.|+++.+. ++.|.+|++.... ...
T Consensus 161 ~~~~~~~~~~v~~~d~~~------g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~-- 229 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDG------SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD-- 229 (305)
T ss_dssp CCCCSSSCEEEEEECSSS------CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEE--
T ss_pred ccccccCCCeEEEEcCCC------CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC--
Confidence 24577777654 3333222 33456789999999976655544 2789999987532 100
Q ss_pred CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC 383 (387)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 383 (387)
...+. .........+++.++|...+ +. . +.|.+|+.. ++.+..+.... .+..+
T Consensus 230 -------~~~~~--~~~~~~pdgi~~d~~G~lwv--------~~-~-~gv~~~~~~-------g~~~~~~~~~~-~~~~~ 282 (305)
T 3dr2_A 230 -------RRHFA--SVPDGLPDGFCVDRGGWLWS--------SS-G-TGVCVFDSD-------GQLLGHIPTPG-TASNC 282 (305)
T ss_dssp -------EEEEE--CCSSSCCCSEEECTTSCEEE--------CC-S-SEEEEECTT-------SCEEEEEECSS-CCCEE
T ss_pred -------CeEEE--ECCCCCCCeEEECCCCCEEE--------ec-C-CcEEEECCC-------CCEEEEEECCC-ceeEE
Confidence 01111 11234557789999998444 22 2 348889876 44555554433 46667
Q ss_pred eecC
Q 016547 384 TSKP 387 (387)
Q Consensus 384 ~f~P 387 (387)
+|.|
T Consensus 283 ~f~~ 286 (305)
T 3dr2_A 283 TFDQ 286 (305)
T ss_dssp EECT
T ss_pred EEeC
Confidence 7653
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.32 E-value=1.3e-09 Score=92.47 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=142.3
Q ss_pred CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe------ccCCCceEEEEECCCCCEEEEecCC------
Q 016547 41 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAMCPTEPYVLSGGKD------ 108 (387)
Q Consensus 41 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~~~~~~~l~s~~~d------ 108 (387)
+....++++|..++.|.|+|+.+.+... +...+++ ......-..+..+|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p--------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP--------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC--------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc--------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 5455566778889999999997653221 2222331 0010012456778999 76666555
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.|.+.|.++.......... ......-..+.|+|++ +.+++.
T Consensus 164 g~v~vlD~~T~~v~~~~~~~-------------------------------------~~~~~~~Yd~~~~p~~-~~mvsS 205 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEID-------------------------------------RGDQYLAYDFWWNLPN-EVLVSS 205 (462)
T ss_dssp CEEEEECTTTCCEEEECCSB-------------------------------------CTTCCCCCCEEEETTT-TEEEEC
T ss_pred CeEEEEECCCCeEEEEEccC-------------------------------------CCCccccceEEECCCC-CEEEEc
Confidence 78999998765433222110 0111223467889998 566666
Q ss_pred c-------------------CCCeEEEEEccCCCCceeEEeecc--CCCeeEEEe--cCCCCCeEEEee------CCCeE
Q 016547 189 G-------------------DDSCLILWDARVGTSPVIKVEKAH--DADLHCVDW--NPLDDNLILTGS------ADNSV 239 (387)
Q Consensus 189 ~-------------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~l~~~~------~dg~i 239 (387)
. .+.+|.+||+.+++ ....+... ......+.| +| +++++.+++ .+++|
T Consensus 206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEE
T ss_pred cCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceE
Confidence 3 37899999998765 34444332 123445555 99 888777776 45688
Q ss_pred EEEEeccCCCCCCCCceEEe--cc----------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547 240 RMFDRRNLTSNGVGSPINKF--EG----------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 301 (387)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~--~~----------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~ 301 (387)
.+|...... .+....+ .. -......|.+++||++|+++.-..+.|.+||+......
T Consensus 283 ~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~-- 356 (462)
T 2ece_A 283 WLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP-- 356 (462)
T ss_dssp EEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--
T ss_pred EEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--
Confidence 776654310 1111111 10 02346789999999999999988999999999753221
Q ss_pred cCCCCCCCCceeeeeeccC--------------CCCeeEEEEccCCCeEEEEe
Q 016547 302 QGPRTTNYPAGLFFQHAGH--------------RDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~s~ 340 (387)
+++...... .+....++++|+|++|+++.
T Consensus 357 ----------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 357 ----------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ----------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ----------EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 122222111 11358899999999999876
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=3.2e-11 Score=101.75 Aligned_cols=252 Identities=11% Similarity=-0.028 Sum_probs=151.8
Q ss_pred EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC------CCceEEEEECCCC
Q 016547 36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE 99 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------~~~v~~~~~~~~~ 99 (387)
.+.++| +++.+.++. .++.|.+||..+. +.+..+..+. ...-..+.++|||
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG 135 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------CEEEEEECCCccccccCCCcceEEEcCCC
Confidence 799999 666666654 3688999999999 5555554330 0012489999999
Q ss_pred CEEEEecC--CCeEEE--EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 100 PYVLSGGK--DKSVVL--WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 100 ~~l~s~~~--d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
++++++.. +..|.+ +|..+ . ..+.. .+ ++
T Consensus 136 k~lyVan~~~~~~v~V~~iD~~t-v------------------------------------------~~i~v-~~---~~ 168 (368)
T 1mda_H 136 ACLLFFLFGSSAAAGLSVPGASD-D------------------------------------------QLTKS-AS---CF 168 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE-E------------------------------------------EEEEC-SS---CC
T ss_pred CEEEEEccCCCCeEEEEEEchhh-c------------------------------------------eEEEC-CC---ce
Confidence 99998864 467888 88764 0 11110 00 12
Q ss_pred EEccCCCeeEEEecCCCeEEEEEccC-----CCCcee--EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 176 TFCPSSAQEFCSVGDDSCLILWDARV-----GTSPVI--KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
...|++...+++.+.||.+.+.|+.+ ++.... ..+.....+. . .+ ++..++..+. +.+.+.|.....
T Consensus 169 ~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~ 242 (368)
T 1mda_H 169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAG 242 (368)
T ss_dssp CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSC
T ss_pred EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCc
Confidence 23455556677777888888888876 221000 0011112232 3 55 4555555556 999999986411
Q ss_pred CCCCCCceEEecc-------cc---ceEEEEEEcCCCCeeEEEec---C-----CCeEEEEeCCCCCceeccCCCCCCCC
Q 016547 249 SNGVGSPINKFEG-------HS---AAVLCVQWSPDKSSVFGSSA---E-----DGLLNIWDYEKVGKKVEQGPRTTNYP 310 (387)
Q Consensus 249 ~~~~~~~~~~~~~-------~~---~~i~~~~~~~~~~~ll~s~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~ 310 (387)
.+.+..+.. +. .....++++|++++++++.. . ++.+.++|+.+...
T Consensus 243 ----~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v------------ 306 (368)
T 1mda_H 243 ----ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------------ 306 (368)
T ss_dssp ----CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------------
T ss_pred ----ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE------------
Confidence 111111110 11 11112689999998886544 2 23566999988522
Q ss_pred ceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547 311 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 386 (387)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~ 386 (387)
+..+... .....++|+|+++++++++.. .+++|.++|+. +++.++++.... .-+.++++
T Consensus 307 ---v~~i~vg-~~p~gi~~s~Dg~~l~va~~~------~~~~VsVID~~------t~kvv~~I~vg~-~P~~i~~~ 365 (368)
T 1mda_H 307 ---SGPISNG-HDSDAIIAAQDGASDNYANSA------GTEVLDIYDAA------SDQDQSSVELDK-GPESLSVQ 365 (368)
T ss_dssp ---EECCEEE-EEECEEEECCSSSCEEEEEET------TTTEEEEEESS------SCEEEEECCCCS-CCCEEECC
T ss_pred ---EEEEECC-CCcceEEECCCCCEEEEEccC------CCCeEEEEECC------CCcEEEEEECCC-CCCEEEee
Confidence 3333222 257899999999988776541 24999999999 788888887443 33344443
No 222
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.30 E-value=3.8e-08 Score=80.02 Aligned_cols=253 Identities=7% Similarity=-0.058 Sum_probs=150.7
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCcc
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~ 123 (387)
.+|..+.. +.|+.++++....... .....+..... ....++|++++..|+ +-..++.|..++.......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~-------~~~~~~~~~~~-~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~- 71 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKT-------EAKAFLHIPAK-VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT- 71 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGG-------GCEEEEEEEEE-EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-
T ss_pred cEEEEEcC-CeEEEEEecCcccccc-------cceeeecCCCC-cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-
Confidence 34444443 4788888876521100 00111221111 357999999766555 4445789999998643110
Q ss_pred ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547 124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 203 (387)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 203 (387)
............+++.++++.++++-...+.|.++++....
T Consensus 72 ---------------------------------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 72 ---------------------------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp ---------------------------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ---------------------------------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 11111224578999999765777777788899999987544
Q ss_pred CceeEEeeccCCCeeEEEecCCCCCeEEEeeC---CCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeE
Q 016547 204 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVF 279 (387)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll 279 (387)
. .............++++| ++..|..+.. .+.|..+++.. .....+. ..-.....+++++++.+|+
T Consensus 113 ~--~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg-------~~~~~~~~~~~~~P~gia~d~~~~~ly 182 (267)
T 1npe_A 113 R--RVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDG-------TNRRILAQDNLGLPNGLTFDAFSSQLC 182 (267)
T ss_dssp C--EEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTS-------CCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred E--EEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCC-------CCcEEEEECCCCCCcEEEEcCCCCEEE
Confidence 2 122222225678999999 6555555443 36788887753 2222221 2224578999999988888
Q ss_pred EEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 280 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++-...+.|.++|+..... .....+ ......++. ++.+++++... ++.|.++|..
T Consensus 183 v~d~~~~~I~~~~~~g~~~---------------~~~~~~-~~~P~gi~~--d~~~lyva~~~-------~~~v~~~d~~ 237 (267)
T 1npe_A 183 WVDAGTHRAECLNPAQPGR---------------RKVLEG-LQYPFAVTS--YGKNLYYTDWK-------TNSVIAMDLA 237 (267)
T ss_dssp EEETTTTEEEEEETTEEEE---------------EEEEEC-CCSEEEEEE--ETTEEEEEETT-------TTEEEEEETT
T ss_pred EEECCCCEEEEEecCCCce---------------EEEecC-CCCceEEEE--eCCEEEEEECC-------CCeEEEEeCC
Confidence 8888889999999875311 111111 223456665 35677765443 3899999998
Q ss_pred CCcccccchhhhhhhccCc-eEEEeeecC
Q 016547 360 DLIYRPQDEVLAELEKFKA-HVISCTSKP 387 (387)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~v~~~~f~P 387 (387)
+++.+.++..... ....+++.|
T Consensus 238 ------~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 238 ------ISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp ------TTEEEEEECCSSCCCCCCEEEEC
T ss_pred ------CCCceEEEccccccccceeeecC
Confidence 6776666653321 244555543
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=3.1e-09 Score=89.89 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=124.5
Q ss_pred ceEEEEECCCCCEEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547 89 AEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 166 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (387)
....++++++|+.+++.. .++.++||.+.++.. ..+.. .. ....
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~-------------------------------~~--~~~~ 63 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPP-------------------------------QS--GNAI 63 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCC-------------------------------CC--SSCC
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCC-------------------------------cc--cCcc
Confidence 468999999999988853 234366676643211 00000 00 0112
Q ss_pred CCCCCeEEEEEccCCCeeEEEecC-----CCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCCCCeEEEee-
Q 016547 167 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGS- 234 (387)
Q Consensus 167 ~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~- 234 (387)
.+...+.++++.+++ +++++-.. ++.|.+||+.+++ ....+.. +...+..+++++.++..+++-.
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 355679999999998 66665443 5789999998776 3333321 2245689999982344455554
Q ss_pred --CCCeEEEEEeccCCCCCCCCceEEeccc-----------------------------cceEEEEEEcCCCCeeEEEec
Q 016547 235 --ADNSVRMFDRRNLTSNGVGSPINKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 235 --~dg~i~~~d~~~~~~~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~ll~s~~ 283 (387)
.++.|.+||+.+ ++..+.+..| ...+..++|+|+++.|+++..
T Consensus 141 ~~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 141 PDDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp SGGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred cCCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence 678999999876 3333322211 123688999999997765554
Q ss_pred CCCeEEEEeCCCCCceeccCCCCCCCCceee--eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF--FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....+..++........ . ...... ....++......++++++|.. .++.. .++.|.+||..
T Consensus 215 ~~~~l~~~~~~~~~~~~----~---~~~~~~~~~~~~g~~g~pdgia~d~~G~l-~va~~-------~~~~V~~~d~~ 277 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQ----L---TDAELGSKIERYSEKPICDGISIDKDHNI-YVGDL-------AHSAIGVITSA 277 (343)
T ss_dssp SCSEEEEEEHHHHTCTT----C---CHHHHHTTCEEEEECCSCSCEEECTTCCE-EEEEG-------GGTEEEEEETT
T ss_pred CCCeEEEEEHHHhcCCC----C---ChhhhhcceEecccCCCCceEEECCCCCE-EEEcc-------CCCeEEEEECC
Confidence 44455555542110000 0 000000 011234446678999998864 44443 34899999983
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=105.46 Aligned_cols=184 Identities=14% Similarity=0.069 Sum_probs=98.8
Q ss_pred CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547 43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 122 (387)
Q Consensus 43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 122 (387)
++..|++++.||.|+.||..++ +.+..+.. + .+.+..+..++..+++++.|+.|..||.+++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG------------~~~W~~~~--~-~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG------------SIKWTLKE--D-PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC------------CEEEEEEC--C-CSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCC------------CEEEEecC--C-CceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 4568888999999999999999 45555554 2 3445555567878888889999999999776443
Q ss_pred cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547 123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202 (387)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 202 (387)
....... .... ...++ +. .+ ..+++++.++.|+.||.+++
T Consensus 73 w~~~~~~---------------------------------~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG 112 (369)
T 2hz6_A 73 TKLPFTI---------------------------------PELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTG 112 (369)
T ss_dssp EECSCCH---------------------------------HHHH-TTCSC----C-------CCCCEEEEEEEEECCC--
T ss_pred eeeeccC---------------------------------cccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCC
Confidence 2211100 0000 01111 11 22 35777888999999999988
Q ss_pred CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC---CeeE
Q 016547 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVF 279 (387)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll 279 (387)
+. ...+..+. ...++| ++..+++++.|+.|+.||.++ ++.+..+..+. ....++.++. ..++
T Consensus 113 ~~--~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~~--~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 113 EK--QQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKT------RELRWNATYFD--YAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSS------SSCCCEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred cE--EEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCC------CCEEEeEeccc--ccCccccCCccccceEE
Confidence 73 33333222 235567 788899999999999999998 76665554221 2233344432 3344
Q ss_pred EEecCCCeEEEEeCCCCC
Q 016547 280 GSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 280 ~s~~~d~~i~vwd~~~~~ 297 (387)
.++.||.|..||..++.
T Consensus 178 -~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 178 -VSNGDGLVVTVDSESGD 194 (369)
T ss_dssp -EEETSCEEEEECTTTCC
T ss_pred -EECCCCEEEEEECCCCc
Confidence 67789999999998753
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=1.2e-09 Score=93.66 Aligned_cols=236 Identities=13% Similarity=0.094 Sum_probs=136.7
Q ss_pred EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEecc--C----CCceEEEEECCCC
Q 016547 36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--Q----DNAEFALAMCPTE 99 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~----~~~v~~~~~~~~~ 99 (387)
.++++| +++.|.++. .++.|.++|..+. +.+..+.-. . +..-..+.++|||
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~------------~vv~~I~v~g~~r~~~g~~P~~~~~spDG 188 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTF------------LPIADIELPDAPRFLVGTYQWMNALTPDN 188 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCC------------cEEEEEECCCccccccCCCcceEEEcCCC
Confidence 799999 666665554 4678999999998 444443321 0 0112478999999
Q ss_pred CEEEEecC--CCeEEEEEcCCCcCccccCCCcc--cCCCCCCceeccCCCCCCCCCCCCCCCCCCCc----eeecCCCCC
Q 016547 100 PYVLSGGK--DKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR----GIYNGHEDT 171 (387)
Q Consensus 100 ~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 171 (387)
++|+++.. ++.|.+.|+.+.+.......... ..+.+......... ++.....+....+.. ..+.....+
T Consensus 189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~---dG~~~~V~~~~~~v~~~~~~~~~v~~~p 265 (426)
T 3c75_H 189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR---DGSLARVDFADGETKVTNTEVFHTEDEL 265 (426)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET---TSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC---CCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence 99998764 57999999998765443322110 00000000000000 111000000111100 011111111
Q ss_pred e-EEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----------cCCCeeEEEecCCCCCeEEEeeC-----
Q 016547 172 V-EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSA----- 235 (387)
Q Consensus 172 v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~----- 235 (387)
+ ..+.+.+++..+++ .+..+.+.+.|+..........+.. .......++++| +++.+++...
T Consensus 266 ~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 266 LINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEW 343 (426)
T ss_dssp BCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTT
T ss_pred eeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccc
Confidence 1 23567888844444 4567899999987654111111110 112223478999 7776666542
Q ss_pred -----CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCC-eeEEEecCCCeEEEEeCCCC
Q 016547 236 -----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 236 -----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ll~s~~~d~~i~vwd~~~~ 296 (387)
++.|.++|..+ .+.+.++.. .....+++|+|+++ .++++...++.|.++|+.+.
T Consensus 344 thk~~s~~VsVID~~T------~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 344 KHKAASRFVVVLNAET------GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp CTTSCEEEEEEEETTT------CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred cccCCCCEEEEEECCC------CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 35799999999 888888863 34588999999998 76655557999999999985
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.18 E-value=4.2e-08 Score=78.27 Aligned_cols=207 Identities=8% Similarity=0.030 Sum_probs=136.7
Q ss_pred eeeeeeecCCCc--EEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 22 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 22 ~~~~~~~~h~~~--v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
.+....+.|... ...++|++ ++.+.++.+. ++.|.+.|+.++ +.+..+.-........+++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg------------~v~~~i~l~~~~fgeGi~~~- 74 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTG------------KVENIHKMDDSYFGEGLTLL- 74 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEE-
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCC------------CEEEEEecCCCcceEEEEEe-
Confidence 455666778754 58999998 5666666543 679999999999 44444432221122345554
Q ss_pred CCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 98 TEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 98 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
++.| ++.-.++.+.++|..+.+.. ..+...... ...
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~~v~----------------------------------------~~i~~g~~~--g~g 111 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTLSNI----------------------------------------KNFTHQMKD--GWG 111 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTTEEE----------------------------------------EEEECCSSS--CCE
T ss_pred -CCEEEEEEecCCEEEEEECCCCcEE----------------------------------------EEEECCCCC--eEE
Confidence 4444 44456889999999865332 222111011 233
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
+++++..++ ++..++.|.++|..+.+ ....+.- .. ..++.+.|. ++..++....++.|.+.|..+
T Consensus 112 lt~Dg~~l~-vs~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t----- 181 (266)
T 2iwa_A 112 LATDGKILY-GSDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD----- 181 (266)
T ss_dssp EEECSSSEE-EECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT-----
T ss_pred EEECCCEEE-EECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC-----
Confidence 556774444 45568899999998877 3333321 11 235677877 466666655688999999998
Q ss_pred CCCceEEecccc-------------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 252 VGSPINKFEGHS-------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 252 ~~~~~~~~~~~~-------------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
++.+..+.... ...+.|+|+|+++.+|+++...+.+.+.++...
T Consensus 182 -g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 -GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 88877775321 356899999999999999999999999998764
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.16 E-value=4.6e-08 Score=78.05 Aligned_cols=198 Identities=11% Similarity=0.028 Sum_probs=130.2
Q ss_pred eEEEEECCCCCEEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547 90 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 167 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (387)
...+.|++++...++.+. +++|.+.|+.+++...... +..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------------------------------------l~~ 64 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------------------------------------MDD 64 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------------------------------------CCT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------------------------------------cCC
Confidence 468999998755555443 5799999998764432111 111
Q ss_pred CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
+ .....+++. ++.++++.-.++.+.++|..+.+ .+..+..... ....+++ ++..++++..++.|.++|..+
T Consensus 65 ~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~--~g~glt~-Dg~~l~vs~gs~~l~viD~~t- 135 (266)
T 2iwa_A 65 S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMK--DGWGLAT-DGKILYGSDGTSILYEIDPHT- 135 (266)
T ss_dssp T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSS--SCCEEEE-CSSSEEEECSSSEEEEECTTT-
T ss_pred C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCC--CeEEEEE-CCCEEEEECCCCeEEEEECCC-
Confidence 1 122345554 43677777789999999998877 4444432211 2334556 667677777789999999988
Q ss_pred CCCCCCCceEEecccc--c---eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc---
Q 016547 248 TSNGVGSPINKFEGHS--A---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--- 319 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (387)
.+.+..+.--. . .++.+.|. ++ .+++....++.|.+.|..+...... + .+.+
T Consensus 136 -----~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~------------I-~~~g~~~ 195 (266)
T 2iwa_A 136 -----FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGW------------I-LLPNLRK 195 (266)
T ss_dssp -----CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEE------------E-ECHHHHH
T ss_pred -----CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEE------------E-ECCCccc
Confidence 67676665321 1 36788888 66 4787877789999999988532211 1 1111
Q ss_pred --------CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 320 --------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 320 --------~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
.....+.++|+|+++.+++++. ..+.|.+-++...
T Consensus 196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-------~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGK-------LWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHTTCTTCCCEEEEEEETTTTEEEEEET-------TCSEEEEEEEEEC
T ss_pred ccccccccccCceEEEEEcCCCCEEEEECC-------CCCeEEEEEEecc
Confidence 1135689999999999998554 4489999998753
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.14 E-value=1.3e-06 Score=70.86 Aligned_cols=200 Identities=5% Similarity=-0.004 Sum_probs=125.8
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCe
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKS 110 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~ 110 (387)
..+..+++.+.++.++++-..++.|..++.+.. ........... ....+++++++..|+ +-...+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~------------~~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~~~~ 102 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG------------EPTTIIRQDLG-SPEGIALDHLGRTIFWTDSQLDR 102 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC------------CCEEEECTTCC-CEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC------------CcEEEEECCCC-CccEEEEEecCCeEEEEECCCCE
Confidence 457899999866777777777889999998765 22222222212 357999999766555 4455678
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
|.+++++..... ............+++.|+++.++++...
T Consensus 103 I~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 103 IEVAKMDGTQRR----------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp EEEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECC
T ss_pred EEEEEcCCCCEE----------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECC
Confidence 999987632110 0111112356889999976466666544
Q ss_pred --CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547 191 --DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 267 (387)
Q Consensus 191 --dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 267 (387)
.+.|..+++..... .............++++| ++..| ++-...+.|..+|... ......+.. .....
T Consensus 143 ~~~~~I~~~~~dg~~~--~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g------~~~~~~~~~-~~~P~ 212 (267)
T 1npe_A 143 RDNPKIETSHMDGTNR--RILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEG-LQYPF 212 (267)
T ss_dssp SSSCEEEEEETTSCCC--EEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE------EEEEEEEEC-CCSEE
T ss_pred CCCcEEEEEecCCCCc--EEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC------CceEEEecC-CCCce
Confidence 47888888865431 111212334678999999 65555 5555568999999875 322222222 22335
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.++.. +.+++++....+.|.++|..++
T Consensus 213 gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 213 AVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 66654 5567777777899999998864
No 229
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.12 E-value=2.8e-08 Score=83.79 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=124.5
Q ss_pred cEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 33 EVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 33 ~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
.-..++++| ++++|.++.. ++.|.++|+.+. +.+..+.... . ...+....+.+++.+.||+
T Consensus 138 ~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~------------~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~ 200 (386)
T 3sjl_D 138 YPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK------------AFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGS 200 (386)
T ss_dssp CGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT------------EEEEEEECCS--E--EEEEEEETTEEEEEETTSC
T ss_pred CCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC------------cEEEEEECCC--c--ceeecCCCceeEEECCCCC
Confidence 455688999 7777766653 689999999998 4444443321 1 1222223456667777888
Q ss_pred EEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE-EEEEc-cCCCeeEEE
Q 016547 111 VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE-DVTFC-PSSAQEFCS 187 (387)
Q Consensus 111 i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~l~~ 187 (387)
+.+.++.+ +..... .. ..+.....++. ...|. ++| ++++
T Consensus 201 ~~~v~~~~~g~v~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~dG-~~~~- 242 (386)
T 3sjl_D 201 LAKVAFGTEGTPEIT-HT-----------------------------------EVFHPEDEFLINHPAYSQKAG-RLVW- 242 (386)
T ss_dssp EEEEECCSSSCCEEE-EC-----------------------------------CCCSCTTSCBCSCCEEETTTT-EEEE-
T ss_pred EEEEECCCCCeEEEe-ec-----------------------------------ceeccccccccccceeEcCCC-cEEE-
Confidence 88888765 221100 00 00000011111 13554 566 5444
Q ss_pred ecCCCeEEEEEccCCCCceeEEee----------ccCCCeeEEEecCCCCCeEEEeeC----------CCeEEEEEeccC
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEK----------AHDADLHCVDWNPLDDNLILTGSA----------DNSVRMFDRRNL 247 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~ 247 (387)
.+.+|.|++.|+..........+. -.......+++++ +++.+.+... .+.|.++|+.+
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t- 320 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT- 320 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTT-
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCC-
Confidence 455899999999766522222111 0123445678888 7777776543 25799999998
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCC-eeEEEecCCCeEEEEeCCCC
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ll~s~~~d~~i~vwd~~~~ 296 (387)
.+.+..+.. ...+.++++++|++ .|+++...++.|.++|..+.
T Consensus 321 -----~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 321 -----GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp -----CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred -----CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 888888763 45788999999997 56666677999999999885
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=9.2e-08 Score=81.35 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=110.7
Q ss_pred CeEEEEEccCCCeeEEEecCC------CeEEEEEccCCCCceeEEeecc--C-CCeeEEEecCCCCCeEEEee-------
Q 016547 171 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--D-ADLHCVDWNPLDDNLILTGS------- 234 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~~l~~~~------- 234 (387)
.-..+...|++ +++++..+ |.|.++|.++.+ .+...... . .--+.+.|+| +++.+++..
T Consensus 139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~ 213 (462)
T 2ece_A 139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTI 213 (462)
T ss_dssp EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHH
T ss_pred cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccc
Confidence 34567888998 55565544 789999999888 45554422 1 2234688899 888888875
Q ss_pred ------------CCCeEEEEEeccCCCCCCCCceEEeccc--cceEEEEEE--cCCCCeeEEEec-----CCCeEEEEeC
Q 016547 235 ------------ADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQW--SPDKSSVFGSSA-----EDGLLNIWDY 293 (387)
Q Consensus 235 ------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~ll~s~~-----~d~~i~vwd~ 293 (387)
.+..|.+||+.+ ++.+.++..- ......+.| +|++++.++++- .++.|.+|..
T Consensus 214 ~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 214 EDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp TTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccccchhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 368999999997 6777777642 234456655 999999887777 7889988877
Q ss_pred CCCCceeccCCCCCCCCce-eeeee-------ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 294 EKVGKKVEQGPRTTNYPAG-LFFQH-------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.. +......... .+.. ....+ .+-......+.++||+++|.++.-.+ +.|.+||+.+
T Consensus 288 d~-g~~~~~~vId--i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d 352 (462)
T 2ece_A 288 ED-GKWNAEKVIE--IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISN 352 (462)
T ss_dssp ET-TEEEEEEEEE--ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSS
T ss_pred cC-CceeEEEEEe--CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecC
Confidence 64 2211000000 0000 00000 00124578999999999999976554 8999999973
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=1.1e-08 Score=90.04 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=93.8
Q ss_pred CeEEEEEccC--CCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCC------CCCCCceEEeccc
Q 016547 192 SCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTS------NGVGSPINKFEGH 262 (387)
Q Consensus 192 g~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~~~~~~~~~~~~~ 262 (387)
+.|.+.|.++ ++. ....+.. .....++.++| +++++++++ .+..|.++|+.+.+. ......+.++. -
T Consensus 254 ~~V~VID~~~~~~~~-~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v 329 (595)
T 1fwx_A 254 NGVKVVDGRKEASSL-FTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 329 (595)
T ss_dssp TTEEEEECSGGGCCS-SEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred CcEEEEeCcccCCce-eEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence 4588999887 431 1233322 34678999999 888777666 578999999996210 00011223333 3
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC-----eeEEEEccCCCeEE
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK-----VVDFHWNASDPWTV 337 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~ 337 (387)
......++|+|+| +++++.-.|+.|.+||+........ ... ....+..+..|-.+ -.++.++|||++|+
T Consensus 330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~-g~~----~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA-GEK----VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH-TCS----CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc-ccc----cceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 4567899999999 7888899999999999986211000 000 01234444444332 23345789999998
Q ss_pred EEecCCCCCCCCCce----------EEEEecC
Q 016547 338 VSVSDDCDSTGGGGT----------LQIWRMS 359 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~----------i~iw~~~ 359 (387)
+++. ++.|.. -.++|+.
T Consensus 404 ~~Nk-----~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 404 CLSK-----FSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp EEES-----CCTTSSCCCCSSCCEEEEEEECS
T ss_pred EcCC-----CCccccccCCCCCCCcceEEEcC
Confidence 8763 333443 2888886
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=5.1e-11 Score=101.75 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=71.2
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
++..+++++.||.|..||..+++.... +.. +.+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------------------------------------~~~--~~~~s~p~ 45 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------------------------------------LKE--DPVLQVPT 45 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE----------------------------------------EEC--CCSCCCC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE----------------------------------------ecC--CCceecce
Confidence 577899999999999999987654322 111 22333334
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCee-EEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
..++ ..+++++.||.|+.||.++++. ......+. ..+. +..+. .+..+++++.|+.|+.||.++ ++.
T Consensus 46 ~~~g-~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~ 114 (369)
T 2hz6_A 46 HVEE-PAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLT------GEK 114 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred EcCC-CEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCC------CcE
Confidence 4555 6788888999999999988773 22222111 0110 01111 345677888999999999998 777
Q ss_pred eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+..+..+. ...++|++.. +++++.|+.|+.||.+++.
T Consensus 115 ~w~~~~~~----~~~~~p~~~~-v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSL-LYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp -----------------------EEEEEEEEEEECCCSSSSS
T ss_pred EEEecCCC----cccccccCCE-EEEEecCCEEEEEECCCCC
Confidence 77766543 2345667765 4577889999999998753
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=1.3e-07 Score=74.48 Aligned_cols=203 Identities=9% Similarity=0.044 Sum_probs=123.2
Q ss_pred EEEeccCCCceEEEEECCCCCEEEEecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547 80 LILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 157 (387)
Q Consensus 80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (387)
.++..........+.|+ ++.+..+.+.+| .|+++|+++++....
T Consensus 35 ~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~--------------------------------- 80 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ--------------------------------- 80 (262)
T ss_dssp EEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE---------------------------------
T ss_pred EEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE---------------------------------
Confidence 34433333345688998 666666777666 899999987644322
Q ss_pred CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
+... .........++++.+++..-.++.+.+||..+.+ .+..+.... .-..++ + ++..|+.+..++
T Consensus 81 -------~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~ 146 (262)
T 3nol_A 81 -------IELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYDG-EGWGLT--H-NDQYLIMSDGTP 146 (262)
T ss_dssp -------EECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC--EEEEEECSS-CCCCEE--E-CSSCEEECCSSS
T ss_pred -------EecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCc--EEEEEECCC-CceEEe--c-CCCEEEEECCCC
Confidence 1111 1222222222344666667789999999999888 455554322 223444 4 667777777788
Q ss_pred eEEEEEeccCCCCCCCCceEEeccc--c---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547 238 SVRMFDRRNLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 312 (387)
Q Consensus 238 ~i~~~d~~~~~~~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 312 (387)
.|.++|..+ .+.+..+... . ..++.+.|. +|+ ++|..-.+..|.+.|..++........... .+..
T Consensus 147 ~i~~iDp~T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L-~~~~ 217 (262)
T 3nol_A 147 VLRFLDPES------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGI-LAEA 217 (262)
T ss_dssp EEEEECTTT------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTG-GGGS
T ss_pred eEEEEcCCC------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcC-cccc
Confidence 899999998 6777766532 1 235567776 665 787777888999999988543211110000 0000
Q ss_pred eeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 313 LFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
.....-....+.++|+|+++.|++++-
T Consensus 218 --~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 218 --GPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp --CSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred --ccccCcCCceEEEEEcCCCCEEEEECC
Confidence 000011236699999999999998765
No 234
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.03 E-value=4.1e-06 Score=70.67 Aligned_cols=238 Identities=6% Similarity=-0.043 Sum_probs=142.8
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~~d~ 109 (387)
.+..+|.+..+ .+.++++ . ...|+..+++.. .....+.... ....++|++.+..|+. -...+
T Consensus 33 ~d~~~C~~~~~-~~~ll~~-~-~~~I~~i~~~g~------------~~~~~~~~~~--~~~~l~~d~~~~~ly~~D~~~~ 95 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFA-N-RIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLD 95 (349)
T ss_dssp TTSSCEEESSS-CCEEEEE-C-BSCEEEECTTSC------------CEEEEECSCS--CEEEEEEETTTTEEEEEETTTT
T ss_pred CCCCccccccc-CceeEee-c-ccceEEEeCCCC------------eeEEeecCCC--ceEEEEEeccccEEEEEeccCC
Confidence 44456666555 4444444 2 345877777655 2333333333 3569999986665554 44578
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|..++++..... ............+++.+.+++++++-.
T Consensus 96 ~I~r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~ 135 (349)
T 3v64_C 96 RILRANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDS 135 (349)
T ss_dssp EEEEEETTSCSCE----------------------------------------EEECSSCSCCCEEEEETTTTEEEEEET
T ss_pred ceEEEecCCCCce----------------------------------------EEEeCCCCCccEEEEecCCCeEEEEcC
Confidence 8888887643211 111112234567888876657778877
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEe-ccccceEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL 267 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~ 267 (387)
..+.|.+.++.... ..............++++|..+.++++-... +.|..+++.. .....+ ...-...+
T Consensus 136 ~~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~Pn 206 (349)
T 3v64_C 136 GTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPN 206 (349)
T ss_dssp TTTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEESCCSSCSCEE
T ss_pred CCCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCcc
Confidence 88899999987654 2222333345678999999444455554444 7788887763 333333 22234578
Q ss_pred EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST 347 (387)
Q Consensus 268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg 347 (387)
.++++|++..|+++-...+.|..+|+...... .+ .........++++. +..+.++-.
T Consensus 207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-------------~~--~~~~~~~P~giav~--~~~ly~td~------ 263 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-------------AV--ISQGLPHPFAITVF--EDSLYWTDW------ 263 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------------EE--ECSSCSSEEEEEEE--TTEEEEEET------
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-------------EE--EeCCCCCceEEEEE--CCEEEEecC------
Confidence 99999988878888888899999998753211 11 11223455677773 345655433
Q ss_pred CCCceEEEEec
Q 016547 348 GGGGTLQIWRM 358 (387)
Q Consensus 348 ~~dg~i~iw~~ 358 (387)
..+.|..++.
T Consensus 264 -~~~~V~~~~~ 273 (349)
T 3v64_C 264 -HTKSINSANK 273 (349)
T ss_dssp -TTTEEEEEET
T ss_pred -CCCeEEEEEc
Confidence 3377777774
No 235
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.02 E-value=2.7e-06 Score=72.89 Aligned_cols=235 Identities=6% Similarity=-0.048 Sum_probs=139.8
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEE
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVL 113 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~v 113 (387)
.|.+..+ .+.++++ . ...|+..++... .....+.... ....++|++.+..|+ +-...+.|..
T Consensus 80 ~C~~~~~-~~~l~~~-~-~~~I~~i~~~~~------------~~~~~~~~~~--~~~gl~~d~~~~~ly~~D~~~~~I~r 142 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-N-RIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLDRILR 142 (386)
T ss_dssp CEEECSS-CCEEEEE-C-BSCEEEECTTSC------------CCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eECCccc-cceeEee-c-CccceeeccCCC------------cEEEEecCCC--ccEEEEEecCCCeEEEEeCCCCcEEE
Confidence 4444333 3333333 2 346888887765 3333344433 356999997665554 4446788888
Q ss_pred EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547 114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 193 (387)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 193 (387)
++++..... ..+.........+++.+.++.++++-...+.
T Consensus 143 ~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 143 ANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp EETTSCCEE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred EecCCCCcE----------------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence 887643210 1111112334678888766577778777889
Q ss_pred EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEE
Q 016547 194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQW 271 (387)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 271 (387)
|.+.++.... ..............++++|..+.++++-... +.|..+++.. .....+ ...-...+.|++
T Consensus 183 I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnGlav 253 (386)
T 3v65_B 183 IEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNGLTI 253 (386)
T ss_dssp EEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEEE
T ss_pred EEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCeeeEEE
Confidence 9999887544 2222333345678999998344444444444 6788887763 333333 222345789999
Q ss_pred cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547 272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG 351 (387)
Q Consensus 272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg 351 (387)
+|++..|+++-+..+.|..+|+...... .+ .........++++. +..++++-. ..+
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~-------------~~--~~~~~~~P~giav~--~~~ly~td~-------~~~ 309 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGSHRK-------------AV--ISQGLPHPFAITVF--EDSLYWTDW-------HTK 309 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSCSCE-------------EE--ECSSCSSEEEEEEE--TTEEEEEET-------TTT
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCeeE-------------EE--EECCCCCceEEEEE--CCEEEEeeC-------CCC
Confidence 9888878888888899999998753211 11 11223456777773 345665433 337
Q ss_pred eEEEEecC
Q 016547 352 TLQIWRMS 359 (387)
Q Consensus 352 ~i~iw~~~ 359 (387)
.|..++..
T Consensus 310 ~V~~~~~~ 317 (386)
T 3v65_B 310 SINSANKF 317 (386)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 88888743
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=3e-08 Score=91.44 Aligned_cols=277 Identities=13% Similarity=0.064 Sum_probs=153.9
Q ss_pred cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC----------ceEEEEECCCCCEEEEecCCCeEEEE
Q 016547 45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----------AEFALAMCPTEPYVLSGGKDKSVVLW 114 (387)
Q Consensus 45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------~v~~~~~~~~~~~l~s~~~d~~i~vw 114 (387)
..|.+++.++.|.-+|..+++. +-.+...... ....+.+ ++..++.++.|+.|..+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~al 143 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIAL 143 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEE
Confidence 3455666688999999998843 2222221100 0012222 45678888889999999
Q ss_pred EcCCCcCccccCCC-c-----ccC--CCCCCceeccCCCC----CCCCCCCCCCCCCCCceeecCC--------------
Q 016547 115 SIQDHITSSATDPA-T-----AKS--AGSSGSIIKQSPKP----GDGNDKAADGPSVGPRGIYNGH-------------- 168 (387)
Q Consensus 115 d~~~~~~~~~~~~~-~-----~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------------- 168 (387)
|..+++........ . ... +......+...... ..+.+..++..+++.+-.+...
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 99888655433321 0 000 00001111111111 1233344444444443332211
Q ss_pred ------------------CCCeEEEEEccCCCeeEEEecCCC-------------------eEEEEEccCCCCceeEEee
Q 016547 169 ------------------EDTVEDVTFCPSSAQEFCSVGDDS-------------------CLILWDARVGTSPVIKVEK 211 (387)
Q Consensus 169 ------------------~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 211 (387)
......+++.|++ .+++.+..++ .|..+|.++++. .-.+.
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~ 300 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQ 300 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEE
T ss_pred cccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEe
Confidence 1112356788887 5666666553 599999999883 32222
Q ss_pred --ccC-------CCeeEEEecCCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-----------ceE--
Q 016547 212 --AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----------AAV-- 266 (387)
Q Consensus 212 --~~~-------~~i~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----------~~i-- 266 (387)
.|. ....-+.... ++ ..++.++.+|.++++|.++ ++.+..+.... .++
T Consensus 301 ~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~t------G~~l~~~~~~~~~~~~~~d~~g~~~~~ 373 (677)
T 1kb0_A 301 ETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTN------GKFISAKNFVPVNWASGYDKHGKPIGI 373 (677)
T ss_dssp SSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred cCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCC------CCEeccccccccCcccccCCCCceeec
Confidence 221 1222233333 55 6899999999999999998 77765553211 111
Q ss_pred ----------------------EEEEEcCCCCeeEEEec-----------------------------------------
Q 016547 267 ----------------------LCVQWSPDKSSVFGSSA----------------------------------------- 283 (387)
Q Consensus 267 ----------------------~~~~~~~~~~~ll~s~~----------------------------------------- 283 (387)
..++++|++..+++...
T Consensus 374 ~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 453 (677)
T 1kb0_A 374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS 453 (677)
T ss_dssp GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred cccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence 14688888875553221
Q ss_pred -CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547 284 -EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI 362 (387)
Q Consensus 284 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~ 362 (387)
..|.|..||+.+++ .+-... +..++.+..+...+..++ .++.||.+++||..
T Consensus 454 ~~~g~l~A~D~~tG~---------------~~W~~~-~~~~~~~g~~~~~g~~v~--------~g~~dg~l~a~D~~--- 506 (677)
T 1kb0_A 454 KPFGRLLAWDPVAQK---------------AAWSVE-HVSPWNGGTLTTAGNVVF--------QGTADGRLVAYHAA--- 506 (677)
T ss_dssp CCEEEEEEEETTTTE---------------EEEEEE-ESSSCCCCEEEETTTEEE--------EECTTSEEEEEETT---
T ss_pred CCccEEEEEeCCCCc---------------EEeecC-CCCCCcCcceEeCCCEEE--------EECCCCcEEEEECC---
Confidence 12678888887742 222222 223444555666777776 55667999999999
Q ss_pred ccccchhhhhhhc
Q 016547 363 YRPQDEVLAELEK 375 (387)
Q Consensus 363 ~~~~~~~~~~~~~ 375 (387)
+++.+.++..
T Consensus 507 ---tG~~lw~~~~ 516 (677)
T 1kb0_A 507 ---TGEKLWEAPT 516 (677)
T ss_dssp ---TCCEEEEEEC
T ss_pred ---CCceeeeeeC
Confidence 7888777653
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.98 E-value=8.7e-08 Score=88.54 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=92.3
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-CCCceEEEEECC---CCCEEEEec-----CCCeEEEE
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCP---TEPYVLSGG-----KDKSVVLW 114 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~~~~~~---~~~~l~s~~-----~d~~i~vw 114 (387)
+..|+.++.|+.|..+|.++++ .+-.+... .......+..+| ++..++..+ .++.|..|
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~------------~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQ------------RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCC------------EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCC------------EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEE
Confidence 3467788889999999999994 33333221 000000111111 444444322 37899999
Q ss_pred EcCCCcCccccCCCcc-cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC-
Q 016547 115 SIQDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS- 192 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 192 (387)
|.++++.......... ............ ....+.. ..-....++......+++.|++ .+++.+..++
T Consensus 189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~-------~~~~~~g---~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~ 257 (689)
T 1yiq_A 189 DAETGKEAWRFYTVPGDPKLPPEGKGMEI-------AAKTWFG---DAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGS 257 (689)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCCSHHHHH-------HHTTCCS---STHHHHCEECCCCSCEEEETTT-TEEEEECCCEE
T ss_pred ECCCCcEEEEecccCCCcccccccccccc-------cccccCC---ceeeecCCCCccccceeEcCCC-CEEEEeCCCCC
Confidence 9998876544332100 000000000000 0000000 0000000111222356788877 5677777765
Q ss_pred ------------------eEEEEEccCCCCceeEEeec--cC-------CCeeEEEecCCCCC---eEEEeeCCCeEEEE
Q 016547 193 ------------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMF 242 (387)
Q Consensus 193 ------------------~i~iwd~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~~---~l~~~~~dg~i~~~ 242 (387)
.|..+|.++++ ..-.+.. |. ..+....... ++. .++.++.+|.++++
T Consensus 258 ~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 258 LWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp SSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEE
T ss_pred ccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEE
Confidence 39999999998 3333322 21 1122222222 444 78899999999999
Q ss_pred EeccCCCCCCCCceE
Q 016547 243 DRRNLTSNGVGSPIN 257 (387)
Q Consensus 243 d~~~~~~~~~~~~~~ 257 (387)
|.++ ++.+.
T Consensus 335 D~~t------G~~l~ 343 (689)
T 1yiq_A 335 DRAT------GELLS 343 (689)
T ss_dssp ETTT------CCEEE
T ss_pred ECCC------CCEec
Confidence 9988 66653
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.97 E-value=1.7e-06 Score=72.40 Aligned_cols=239 Identities=9% Similarity=-0.045 Sum_probs=136.8
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec--------------------cCCCceE
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG--------------------HQDNAEF 91 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------h~~~~v~ 91 (387)
....++++.+ +++++.++..++.|..|+..+.. ...+.. ... ...
T Consensus 19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~p~ 83 (322)
T 2fp8_A 19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSG-------------FVDFAYASPYWNKAFCENSTDAEKRPLCG-RTY 83 (322)
T ss_dssp SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTC-------------EEEEEESCTTCCHHHHTTCCCGGGHHHHC-CEE
T ss_pred CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCc-------------eEEEecccccccccccccccchhccccCC-CCc
Confidence 4467788888 67877788888999999887652 111110 011 357
Q ss_pred EEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCC
Q 016547 92 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHE 169 (387)
Q Consensus 92 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 169 (387)
.+++.+ +++ |+.+...+.|..+|..++...... .... ...
T Consensus 84 gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~-------------------------------------~~~~~~~~ 125 (322)
T 2fp8_A 84 DISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLA-------------------------------------TSVDGVPF 125 (322)
T ss_dssp EEEEETTTTE-EEEEETTTEEEEECTTCEECEEEE-------------------------------------SEETTEEC
T ss_pred eEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEec-------------------------------------ccCCCCcc
Confidence 899997 555 444444455777776543211000 0000 011
Q ss_pred CCeEEEEEcc-CCCeeEEEecC-----------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE
Q 016547 170 DTVEDVTFCP-SSAQEFCSVGD-----------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 231 (387)
Q Consensus 170 ~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 231 (387)
.....+++.+ +| +++++-.. ++.|..+|..+++ .............++++| +++.|.
T Consensus 126 ~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~p~gia~~~-dg~~ly 200 (322)
T 2fp8_A 126 KWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE---TTLLLKELHVPGGAEVSA-DSSFVL 200 (322)
T ss_dssp SCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE---EEEEEEEESCCCEEEECT-TSSEEE
T ss_pred cccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE---EEEeccCCccCcceEECC-CCCEEE
Confidence 3467899999 87 65655432 3678888876655 122222223457899999 887655
Q ss_pred Ee-eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC----------CCeEEEEeCCCCCcee
Q 016547 232 TG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKV 300 (387)
Q Consensus 232 ~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~----------d~~i~vwd~~~~~~~~ 300 (387)
++ +..+.|..|++..... + ....+....+ ...+++.++|. ++++... .+.|..+|... +.
T Consensus 201 v~d~~~~~I~~~~~~~~~~---~-~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G--~~- 271 (322)
T 2fp8_A 201 VAEFLSHQIVKYWLEGPKK---G-TAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG--NI- 271 (322)
T ss_dssp EEEGGGTEEEEEESSSTTT---T-CEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS--CE-
T ss_pred EEeCCCCeEEEEECCCCcC---C-ccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC--CE-
Confidence 55 5568999999874210 1 1111211223 67899999998 4545433 45677777542 21
Q ss_pred ccCCCCCCCCceeeeeeccC----CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 301 EQGPRTTNYPAGLFFQHAGH----RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+..+... ...++.+++. +..|.++ ...++.|..+++.
T Consensus 272 -------------~~~~~~~~g~~~~~~~~~~~~--~g~L~v~-------~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 272 -------------LEVIPLPPPFAGEHFEQIQEH--DGLLYIG-------TLFHGSVGILVYD 312 (322)
T ss_dssp -------------EEEEECCTTTTTSCCCEEEEE--TTEEEEE-------CSSCSEEEEEEC-
T ss_pred -------------EEEEECCCCCccccceEEEEe--CCEEEEe-------ecCCCceEEEecc
Confidence 2222211 2346667663 3456653 3445899999987
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.93 E-value=5.3e-07 Score=71.03 Aligned_cols=192 Identities=12% Similarity=0.144 Sum_probs=122.2
Q ss_pred eeeeeeecCCCcE--EEEEecCCCCcEEEEecCCC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 22 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 22 ~~~~~~~~h~~~v--~~i~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
.+..+.+.|...- ..+.|+ ++.++.+.+.+| .|+++|++++ +.+..+..... .......+
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tg------------kv~~~~~l~~~--~FgeGit~ 94 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESG------------KTLQQIELGKR--YFGEGISD 94 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTC------------CEEEEEECCTT--CCEEEEEE
T ss_pred eEEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCC------------cEEEEEecCCc--cceeEEEE
Confidence 4566677887655 788887 457777777766 8999999999 44444443332 22322233
Q ss_pred CCCEEEE-ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 98 TEPYVLS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 98 ~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
+++.|.. .-.++.+.++|.++.... ..+.... ....
T Consensus 95 ~g~~ly~ltw~~~~v~v~D~~t~~~~----------------------------------------~ti~~~~---eG~g 131 (262)
T 3nol_A 95 WKDKIVGLTWKNGLGFVWNIRNLRQV----------------------------------------RSFNYDG---EGWG 131 (262)
T ss_dssp ETTEEEEEESSSSEEEEEETTTCCEE----------------------------------------EEEECSS---CCCC
T ss_pred eCCEEEEEEeeCCEEEEEECccCcEE----------------------------------------EEEECCC---CceE
Confidence 4455444 345889999999865432 2222111 1123
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
+++++ ..|+.+..++.|.++|..+.+ ....+.- .. ..++.+.|. ++..++..-.++.|.+.|..+
T Consensus 132 lt~dg-~~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t----- 201 (262)
T 3nol_A 132 LTHND-QYLIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET----- 201 (262)
T ss_dssp EEECS-SCEEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT-----
T ss_pred EecCC-CEEEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC-----
Confidence 33566 445555557889999999877 3333322 22 334557775 566666665788999999998
Q ss_pred CCCceEEeccc------------cceEEEEEEcCCCCeeEEEec
Q 016547 252 VGSPINKFEGH------------SAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 252 ~~~~~~~~~~~------------~~~i~~~~~~~~~~~ll~s~~ 283 (387)
++.+..+... ....+.|||+|+++.++++|-
T Consensus 202 -G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 202 -GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 7777766431 235789999999998888874
No 240
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.92 E-value=1.4e-05 Score=66.46 Aligned_cols=224 Identities=4% Similarity=-0.071 Sum_probs=133.8
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKS 132 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 132 (387)
..|+..|+++. .....+..-. ....++|++.+..|+ +-..++.|..+++......
T Consensus 10 ~~I~~i~~~~~------------~~~~~~~~~~--~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~---------- 65 (316)
T 1ijq_A 10 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------- 65 (316)
T ss_dssp SSEEEEETTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred CeEEEEECCCc------------ceEehhcCCC--ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----------
Confidence 46888888876 3333333333 356999998766554 4455688999988641000
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547 133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212 (387)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 212 (387)
......+.........+++.+.+++++++-...+.|.+.|+.... .......
T Consensus 66 --------------------------~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~ 117 (316)
T 1ijq_A 66 --------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE 117 (316)
T ss_dssp ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred --------------------------cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEEEC
Confidence 000011111223457888887554777777788999999987544 2222223
Q ss_pred cCCCeeEEEecCCCCCeEEEeeC-C-CeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547 213 HDADLHCVDWNPLDDNLILTGSA-D-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~ 289 (387)
.......++++| .+..|..+.. . +.|..+++. +.....+. ..-...+.+++++++..|+++-+..+.|.
T Consensus 118 ~~~~P~~iavdp-~~g~ly~~d~~~~~~I~~~~~d-------G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 118 NGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLN-------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp TTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETT-------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCcceEEeCC-CCCEEEEEccCCCCeEEEEcCC-------CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 345678999998 5554444443 3 678888775 33333332 22345789999998888888888888999
Q ss_pred EEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+|+..... ..+...........++++. +..++++-. ..+.|..++..
T Consensus 190 ~~d~dg~~~-------------~~~~~~~~~~~~P~giav~--~~~ly~~d~-------~~~~V~~~~~~ 237 (316)
T 1ijq_A 190 SIDVNGGNR-------------KTILEDEKRLAHPFSLAVF--EDKVFWTDI-------INEAIFSANRL 237 (316)
T ss_dssp EEETTSCSC-------------EEEEECTTTTSSEEEEEEE--TTEEEEEET-------TTTEEEEEETT
T ss_pred EEecCCCce-------------EEEeecCCccCCcEEEEEE--CCEEEEEEC-------CCCeEEEEeCC
Confidence 999875221 1122211222345677774 356666443 33788888764
No 241
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.91 E-value=4.5e-06 Score=66.17 Aligned_cols=208 Identities=8% Similarity=0.099 Sum_probs=129.5
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE--eccCCCceEEEEECCCCCEEEEec
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~v~~~~~~~~~~~l~s~~ 106 (387)
+-.+.+..++|.|+++.++++...++.|...|.. + +....+ .+..+ ...|++.+++.++++.-
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g------------~v~~~i~l~g~~D--~EGIa~~~~g~~~vs~E 88 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G------------DLIRTIPLDFVKD--LETIEYIGDNQFVISDE 88 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C------------CEEEEEECSSCSS--EEEEEECSTTEEEEEET
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C------------CEEEEEecCCCCC--hHHeEEeCCCEEEEEEC
Confidence 4557899999999666777778889999999987 5 333333 33333 56899999998878776
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.++.+.++++............ .. ... ..........++|.|.+..+++
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~-----------------------------~~-~~~-~~~~N~g~EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKI-----------------------------KI-PLQ-ESPTNCGFEGLAYSRQDHTFWF 137 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEE-----------------------------EC-CCS-SCCCSSCCEEEEEETTTTEEEE
T ss_pred CCCcEEEEEcCCCCeeeeeeee-----------------------------cc-ccc-cccccCCcceEEEeCCCCEEEE
Confidence 7889999988653211000000 00 000 0123455789999999855555
Q ss_pred EecCCCeEEEEEccCC-CCceeEEe-------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547 187 SVGDDSCLILWDARVG-TSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 258 (387)
+.......+|.++.. ........ ..+...+.+++++|..+.+++.....+.+..+|.. ++.+..
T Consensus 138 -a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-------g~~~~~ 209 (255)
T 3qqz_A 138 -FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-------GEVIGE 209 (255)
T ss_dssp -EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-------CCEEEE
T ss_pred -EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-------CCEEEE
Confidence 444434445444311 00011111 11234578999999777888888888899999977 454444
Q ss_pred ecccc---------ceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 259 FEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 259 ~~~~~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
+.-.. .....|+|.++|. |+++ ++.+.+++|.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFT 250 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEE
T ss_pred EEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEE
Confidence 43211 2568999999997 6655 5566666554
No 242
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.90 E-value=1.8e-06 Score=67.43 Aligned_cols=206 Identities=8% Similarity=-0.030 Sum_probs=123.2
Q ss_pred CeEEEeccCCCceEEEEECCCCCEEEEecCC--CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547 78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 155 (387)
Q Consensus 78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (387)
.+..+..........+.|+. +.+..+.+.+ ..|+.+|+++++......
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~----------------------------- 60 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE----------------------------- 60 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-----------------------------
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-----------------------------
Confidence 34445333334566899986 5555666655 489999998764432211
Q ss_pred CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
+..+ ..--.++.. ++.++...-.++.+.+||..+.+ .+..+... ..-..++ + ++..|+++..
T Consensus 61 ---------l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~-~~Gwglt--~-dg~~L~vSdg 122 (243)
T 3mbr_X 61 ---------VPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP-GEGWALT--S-DDSHLYMSDG 122 (243)
T ss_dssp ---------CCTT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS-SCCCEEE--E-CSSCEEEECS
T ss_pred ---------CCCC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC-CCceEEe--e-CCCEEEEECC
Confidence 1111 111233433 44677777789999999999887 45555432 2224444 4 5666777777
Q ss_pred CCeEEEEEeccCCCCCCCCceEEecccc-----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 310 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 310 (387)
++.|.++|..+ .+.+.++.-.. ..++.+.+. +|+ ++|....+..|.+.|..++........... .+
T Consensus 123 s~~l~~iDp~t------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l-~~ 193 (243)
T 3mbr_X 123 TAVIRKLDPDT------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQAL-VP 193 (243)
T ss_dssp SSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGG-ST
T ss_pred CCeEEEEeCCC------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcC-cc
Confidence 89999999998 67777665322 245667765 555 777777788999999988543211110000 00
Q ss_pred ceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 311 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
.. ...........+.++++|+++.|++++-
T Consensus 194 ~~-~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 194 DA-DALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT-TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cc-ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 00 0000012246799999999999998764
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=1.7e-06 Score=68.25 Aligned_cols=190 Identities=5% Similarity=-0.031 Sum_probs=120.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
....+.|+ ++.+..+.+.+|.|+++|+++++..... +..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------------------------------------l~~- 94 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---------------------------------------RLG- 94 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---------------------------------------ECT-
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---------------------------------------CCC-
Confidence 35688887 4566677788899999999876543211 111
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
...--.+++ +++.+++..-.++.+.+||..+.+ .+..+... ..-..++ + ++..|+.+..++.|.++|..+
T Consensus 95 ~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~-~eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T-- 164 (268)
T 3nok_A 95 NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ--RERTTRYS-GEGWGLC--Y-WNGKLVRSDGGTMLTFHEPDG-- 164 (268)
T ss_dssp TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--EEEEEECS-SCCCCEE--E-ETTEEEEECSSSEEEEECTTT--
T ss_pred CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--EEEEEeCC-CceeEEe--c-CCCEEEEECCCCEEEEEcCCC--
Confidence 111123444 344666677789999999999887 45555432 2234555 4 567777777799999999998
Q ss_pred CCCCCCceEEecccc-----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee----ecc
Q 016547 249 SNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----HAG 319 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 319 (387)
.+.+.++.... ..++.+.|. +|+ ++|....+..|.+.|..++.......... +... ...
T Consensus 165 ----~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~------L~~~~~~~~~~ 232 (268)
T 3nok_A 165 ----FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASA------LTRAVAGQVTN 232 (268)
T ss_dssp ----CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHH------HHHHHTTTCCC
T ss_pred ----CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCC------CcccccccccC
Confidence 67777665322 235677776 664 78777778899999998853321100000 0000 011
Q ss_pred CCCCeeEEEEccCCCeEEEEec
Q 016547 320 HRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~s~s 341 (387)
-....+.+||+|+++.|++++-
T Consensus 233 ~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 233 PEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCCEEEEEECTTTCCEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEeCC
Confidence 2246799999999999998654
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=5.6e-07 Score=75.48 Aligned_cols=151 Identities=9% Similarity=-0.029 Sum_probs=92.9
Q ss_pred cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 166 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
......+.++...+++ . +..++ +.|..+| .+++ ...........+.++...+ ++ .+.+++.++.|..+|.
T Consensus 173 ~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~- 242 (330)
T 3hxj_A 173 KTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP- 242 (330)
T ss_dssp ECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-
T ss_pred ecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc--EEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-
Confidence 3334456666776666 4 44444 8899999 5555 3334444456688888877 55 4566677888888874
Q ss_pred cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547 246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (387)
+ +..+..+......+..+.+.+++. ++ .++.+|.|..+|. +. +. ...+......+.
T Consensus 243 ~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g-~~--------------~~~~~~~~~~~~ 298 (330)
T 3hxj_A 243 D------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DG-TE--------------KWNFETGSWIIA 298 (330)
T ss_dssp T------SCEEEEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TS-CE--------------EEEEECSSCCCS
T ss_pred C------CCEeEEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CC-cE--------------EEEEEcCCcccc
Confidence 3 555555554444444566666675 44 6777888999985 32 21 222222345567
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
++...+++. +. .|+.+|.+++....
T Consensus 299 ~~~~d~~g~-l~--------~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 299 TPVIDENGT-IY--------FGTRNGKFYALFNL 323 (330)
T ss_dssp CCEECTTCC-EE--------EECTTSCEEEEEC-
T ss_pred ceEEcCCCE-EE--------EEcCCCeEEEEecc
Confidence 777777766 44 35566999988877
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=8.5e-07 Score=69.88 Aligned_cols=191 Identities=7% Similarity=0.015 Sum_probs=121.4
Q ss_pred eeeeeecCCCcE--EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547 23 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100 (387)
Q Consensus 23 ~~~~~~~h~~~v--~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~ 100 (387)
+....+.|...- ..+.|. ++.+..+.+.+|.|+++|++++ +.+..+ -.....-..+++..+ +
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tg------------kv~~~~-l~~~~FgeGit~~g~-~ 107 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESA------------QPVWME-RLGNIFAEGLASDGE-R 107 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCS------------SCSEEE-ECTTCCEEEEEECSS-C
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCC------------cEEeEE-CCCCcceeEEEEeCC-E
Confidence 445666776554 688876 4678888888999999999999 444444 222111123555432 3
Q ss_pred EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 180 (387)
Q Consensus 101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (387)
..+..-.++.+.++|.++.+... .+... ..-..++ ++
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~~----------------------------------------ti~~~-~eGwGLt--~D 144 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRER----------------------------------------TTRYS-GEGWGLC--YW 144 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEEE----------------------------------------EEECS-SCCCCEE--EE
T ss_pred EEEEEccCCEEEEEECCcCcEEE----------------------------------------EEeCC-CceeEEe--cC
Confidence 33344568999999998654332 22211 1123344 45
Q ss_pred CCeeEEEecCCCeEEEEEccCCCCceeEEee--ccCC---CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547 181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 255 (387)
Q Consensus 181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 255 (387)
+.. |+.+..++.|.++|..+.+ ....+. .+.. .++.+.|. ++.+++..-.++.|.+.|..+ ++.
T Consensus 145 g~~-L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------G~V 213 (268)
T 3nok_A 145 NGK-LVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------GTV 213 (268)
T ss_dssp TTE-EEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------CBE
T ss_pred CCE-EEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------CcE
Confidence 634 4444568899999999877 333332 2222 34667776 566666555688999999998 777
Q ss_pred eEEeccc-------------cceEEEEEEcCCCCeeEEEec
Q 016547 256 INKFEGH-------------SAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 256 ~~~~~~~-------------~~~i~~~~~~~~~~~ll~s~~ 283 (387)
+..+... ....+.||++|+++.||++|-
T Consensus 214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 7766522 136789999999888888874
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=2.6e-08 Score=83.65 Aligned_cols=249 Identities=12% Similarity=0.071 Sum_probs=134.9
Q ss_pred EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcccc
Q 016547 46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT 125 (387)
Q Consensus 46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 125 (387)
.|..++.++.|..|| .+++ .......+. ..+.++...+++. |..++.+ |..+|. ++......
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~------------~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGS------------VKWFFKSGE-IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSC------------EEESSCGGG-EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred eEEEEcCCCEEEEEC-CCCc------------EEEEEecCC-CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 466677788899999 6662 222222222 2456677776665 4445544 888885 44332222
Q ss_pred CCCcccCCC---CCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547 126 DPATAKSAG---SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 202 (387)
Q Consensus 126 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 202 (387)
......... ....+.. . ...+.+..++.. .+...........+.++...+++ . +..++.++.|..+|.. +
T Consensus 94 ~~~~~~~~~~~~~~~~l~v-~--t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g 166 (330)
T 3hxj_A 94 DTKKAIVSDFTIFEDILYV-T--SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-G 166 (330)
T ss_dssp CC-----CCEEEETTEEEE-E--CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-S
T ss_pred ECCCCcccCceEECCEEEE-E--ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-C
Confidence 211110000 0111111 1 111222223333 33333333344445666666666 3 6667788999999988 5
Q ss_pred CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEe
Q 016547 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 282 (387)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~ 282 (387)
+ ...........+.++...+ ++.+++ ++ +.|..+| .+ ++.+..+......+.++...+++. ++ .+
T Consensus 167 ~--~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~ 231 (330)
T 3hxj_A 167 T--EKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VT 231 (330)
T ss_dssp C--EEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EE
T ss_pred C--EeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EE
Confidence 5 3334444455677777776 666554 44 7788999 55 666666665556688888888886 44 56
Q ss_pred cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 283 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 283 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.++.|..+|... .. +.........+..+...+++. +. .++.+|.|..+|..
T Consensus 232 t~~~gl~~~~~~g-~~---------------~~~~~~~~~~~~~~~~~~~g~-l~--------v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 232 SLDGHLYAINPDG-TE---------------KWRFKTGKRIESSPVIGNTDT-IY--------FGSYDGHLYAINPD 283 (330)
T ss_dssp ETTTEEEEECTTS-CE---------------EEEEECSSCCCSCCEECTTSC-EE--------EECTTCEEEEECTT
T ss_pred cCCCeEEEECCCC-CE---------------eEEeeCCCCccccceEcCCCe-EE--------EecCCCCEEEECCC
Confidence 6678888887432 11 222222233344455555554 44 33445778888753
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.85 E-value=2.7e-06 Score=66.42 Aligned_cols=193 Identities=9% Similarity=0.084 Sum_probs=120.9
Q ss_pred eeeeeeecCCCc--EEEEEecCCCCcEEEEecCC--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547 22 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTDS--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 97 (387)
Q Consensus 22 ~~~~~~~~h~~~--v~~i~~~~~~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~ 97 (387)
.+....+.|... ...+.|.. +.+..+.+.+ ..|+.+|++++ +.+..........--.+++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tg------------kv~~~~~l~~~~fgeGi~~~- 73 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETG------------RILQRAEVPPPYFGAGIVAW- 73 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEE-
T ss_pred eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCC------------CEEEEEeCCCCcceeEEEEe-
Confidence 345666688654 55899876 4666666665 48999999999 44444443332111234443
Q ss_pred CCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547 98 TEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 176 (387)
Q Consensus 98 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 176 (387)
++.| +..-.++.+.++|.++.... ..+.... .-..++
T Consensus 74 -~~~ly~ltw~~~~v~v~D~~tl~~~----------------------------------------~ti~~~~-~Gwglt 111 (243)
T 3mbr_X 74 -RDRLIQLTWRNHEGFVYDLATLTPR----------------------------------------ARFRYPG-EGWALT 111 (243)
T ss_dssp -TTEEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEECSS-CCCEEE
T ss_pred -CCEEEEEEeeCCEEEEEECCcCcEE----------------------------------------EEEeCCC-CceEEe
Confidence 4444 34456899999999865432 2222111 123444
Q ss_pred EccCCCeeEEEecCCCeEEEEEccCCCCceeEEee--ccC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251 (387)
Q Consensus 177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 251 (387)
+++..++++ ..++.|.++|..+.+ ....+. .+. ..++.+.+. ++..++..-.+..|.+.|.++
T Consensus 112 --~dg~~L~vS-dgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t----- 179 (243)
T 3mbr_X 112 --SDDSHLYMS-DGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS----- 179 (243)
T ss_dssp --ECSSCEEEE-CSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT-----
T ss_pred --eCCCEEEEE-CCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC-----
Confidence 566344444 558899999999877 333332 222 244566665 566666655688999999998
Q ss_pred CCCceEEeccc-------------cceEEEEEEcCCCCeeEEEecC
Q 016547 252 VGSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSAE 284 (387)
Q Consensus 252 ~~~~~~~~~~~-------------~~~i~~~~~~~~~~~ll~s~~~ 284 (387)
++.+..+... ....+.|+++|+++.||++|-.
T Consensus 180 -G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 180 -GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp -CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 7777666421 2367899999999888988853
No 248
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.82 E-value=1.5e-07 Score=79.45 Aligned_cols=267 Identities=9% Similarity=-0.069 Sum_probs=142.8
Q ss_pred CcEEEEecCCC----cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------CCC
Q 016547 44 TKIVATHTDSP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDK 109 (387)
Q Consensus 44 ~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~d~ 109 (387)
.+.+++...++ +|.+.|..+. +.+..+..-.. + .+.++||+++++++. .++
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~------------~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~ 96 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCG------------VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTT------------EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CeEEEECCccCCccceEEEEECCCC------------eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCC
Confidence 34555555455 8889999998 56666655544 4 799999999988875 468
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.+||+.+.+......... .. .... ......+.++||| ++++++.
T Consensus 97 ~VsviD~~T~~vv~~I~v~~------------------------------~~-~~~~--g~~P~~ia~SpDG-k~lyVan 142 (368)
T 1mda_H 97 YVEVFDPVTFLPIADIELPD------------------------------AP-RFSV--GPRVHIIGNCASS-ACLLFFL 142 (368)
T ss_dssp EEEEECTTTCCEEEEEEETT------------------------------SC-SCCB--SCCTTSEEECTTS-SCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCC------------------------------cc-cccc--CCCcceEEEcCCC-CEEEEEc
Confidence 99999998754332211000 00 0000 0234578999999 5566654
Q ss_pred C--CCeEEE--EEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce----EEecc
Q 016547 190 D--DSCLIL--WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI----NKFEG 261 (387)
Q Consensus 190 ~--dg~i~i--wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~ 261 (387)
. +..+.+ +|+.+ ...+.. ... ..+.|.....+++.+.||.+.+.|+.+..... ++.. ..+..
T Consensus 143 ~~~~~~v~V~~iD~~t-----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~-~~v~~~~t~~i~v 212 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD-----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA-GIVGAQCTGAQNC 212 (368)
T ss_dssp CSSSCEEEEEETTTEE-----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC-EECCCCSCTTSCB
T ss_pred cCCCCeEEEEEEchhh-----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccC-CeEEEEeeeeeeC
Confidence 3 467888 99876 122211 111 12334234556667788888888887500000 1111 01111
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
-..+. + .+++..++.+. . +.+.+.|+........... .......... .........++++|++++++++..
T Consensus 213 g~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~-~~~~~~~~~~--~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 213 SSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGATMKAAI-DGNESGRKAD--NFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp CSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCEEECCC-CSSCTHHHHT--TEEECSSSCEEEETTTTEEEEEEE
T ss_pred CCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcceEEEEE-Eecccccccc--ccccCcceeeEEcCCCCEEEEEec
Confidence 12333 3 55555544343 4 8999999865321111000 0000000000 000111222689999999887643
Q ss_pred ---CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547 342 ---DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 387 (387)
Q Consensus 342 ---~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P 387 (387)
..+ .+. ++.+.++|+. +.+.+.++.... ....++|+|
T Consensus 284 ~~~~~~-~~~-~~~~~ViD~~------t~~vv~~i~vg~-~p~gi~~s~ 323 (368)
T 1mda_H 284 EHSRSC-LAA-AENTSSVTAS------VGQTSGPISNGH-DSDAIIAAQ 323 (368)
T ss_dssp ECSSCT-TSC-EEEEEEEESS------SCCEEECCEEEE-EECEEEECC
T ss_pred cccCcc-ccc-CCCEEEEECC------CCeEEEEEECCC-CcceEEECC
Confidence 100 000 2345599999 677777776433 567777765
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.82 E-value=3.2e-05 Score=64.03 Aligned_cols=242 Identities=9% Similarity=0.030 Sum_probs=136.6
Q ss_pred eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.+....+.-......++|.+ +++++++-..++.|..||.+.. ....+.. . .....+++.++|++
T Consensus 22 ~~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-------------~~~~~~~-~-~~p~gia~~~dG~l 85 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-------------QQIHATV-E-GKVSGLAFTSNGDL 85 (306)
T ss_dssp EEEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-------------EEEEEEC-S-SEEEEEEECTTSCE
T ss_pred ceEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-------------eEEEEeC-C-CCceeEEEcCCCcE
Confidence 33444454446788999999 7888888778899999987654 1112221 1 24679999999996
Q ss_pred EEEecCC-C-eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547 102 VLSGGKD-K-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 179 (387)
Q Consensus 102 l~s~~~d-~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (387)
+++.... + .|..++..++..... ... ........++..+
T Consensus 86 ~vad~~~~~~~v~~~d~~~g~~~~~--------------------------------------~~~-~~~~~~~g~~~~~ 126 (306)
T 2p4o_A 86 VATGWNADSIPVVSLVKSDGTVETL--------------------------------------LTL-PDAIFLNGITPLS 126 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEE--------------------------------------EEC-TTCSCEEEEEESS
T ss_pred EEEeccCCcceEEEEcCCCCeEEEE--------------------------------------EeC-CCccccCcccccC
Confidence 6654332 2 455566544321100 000 0111233444445
Q ss_pred CCCeeEEEecCCCeEEEEEccCCCCceeEE--------eeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCC
Q 016547 180 SSAQEFCSVGDDSCLILWDARVGTSPVIKV--------EKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSN 250 (387)
Q Consensus 180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~ 250 (387)
.+ ..+++-..++.|..+|...++...... ....-...+.+ +| +++.| ++-...+.|..||+.....
T Consensus 127 ~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~- 201 (306)
T 2p4o_A 127 DT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDK- 201 (306)
T ss_dssp SS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSC-
T ss_pred CC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCC-
Confidence 44 556666568889998876532101100 00111234555 77 66554 4455578999999874100
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (387)
......+.. ......+++.++|. ++++....+.|.++|... +. ..+..........++++|.
T Consensus 202 --~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G--~~------------~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 202 --PGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--ST------------TIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp --BCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--CE------------EEEECGGGTCTTEEEEEEC
T ss_pred --CCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC--CE------------EEEeecccccCCceEEEEe
Confidence 111111111 12346789999997 566766778899998652 11 0111122223568999998
Q ss_pred ---cCCCeEEEEec
Q 016547 331 ---ASDPWTVVSVS 341 (387)
Q Consensus 331 ---~~~~~l~~s~s 341 (387)
|+++.|+++.+
T Consensus 264 g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 264 QTEGDCTAIYVVTN 277 (306)
T ss_dssp CSTTTTTEEEEEEC
T ss_pred cccCCCCEEEEECC
Confidence 88888887764
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.82 E-value=9.9e-07 Score=77.85 Aligned_cols=202 Identities=10% Similarity=0.046 Sum_probs=123.7
Q ss_pred CCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547 97 PTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 175 (387)
Q Consensus 97 ~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 175 (387)
+||+++..+. .+++|.+.|+.+.+..... .+. .......+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii--------------------------------------~ip-~g~~phg~ 139 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL--------------------------------------EIP-NAKGIHGL 139 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEE--------------------------------------ECS-SCCSEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEE--------------------------------------eCC-CCCCCcce
Confidence 3788876655 4567999999865432100 111 12346677
Q ss_pred EE-c-cCCCeeEEEe------------------cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547 176 TF-C-PSSAQEFCSV------------------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 235 (387)
Q Consensus 176 ~~-~-~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (387)
++ . |+++ +++++ -.++.+.+.|..+.+ ......-.. ....++++| +++++++.+.
T Consensus 140 ~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~ 214 (595)
T 1fwx_A 140 RPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADY-EGKWAFSTSY 214 (595)
T ss_dssp EECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECS-SSSEEEEEES
T ss_pred eeeecCCCc-EEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECC-CCCEEEEEec
Confidence 77 4 7874 44444 235689999998776 344433222 567888999 8888888885
Q ss_pred CC--------------------------------------eEEEEEeccCCCCCCCCc-eEEeccccceEEEEEEcCCCC
Q 016547 236 DN--------------------------------------SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKS 276 (387)
Q Consensus 236 dg--------------------------------------~i~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~ 276 (387)
+. .|.+.|.++.. ++. +..+.. .....++.++|||+
T Consensus 215 ~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~sPDGk 289 (595)
T 1fwx_A 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMAPDKK 289 (595)
T ss_dssp CTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEE-ESSCCCEEECTTSS
T ss_pred CcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEec-CCCceEEEEcCCCC
Confidence 53 24444444310 112 233331 23456799999999
Q ss_pred eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 277 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 277 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
++++++..+..|.++|+.+........ ........... .-......++|+|+| ++.++...| +.|.+|
T Consensus 290 ~v~V~~~~s~~VsVid~~~~~~~~~~~---l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ld-------sqV~kw 357 (595)
T 1fwx_A 290 HLCVAGKLSPTVTVLDVTRFDAVFYEN---ADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLD-------SQVVKW 357 (595)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHHHSC---CCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTT-------TEEEEE
T ss_pred EEEEeCCCCCeEEEEECcccccccccc---cCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecC-------CcEEEE
Confidence 999999999999999999642110000 00000112222 223467899999999 777655544 999999
Q ss_pred ecC
Q 016547 357 RMS 359 (387)
Q Consensus 357 ~~~ 359 (387)
|+.
T Consensus 358 di~ 360 (595)
T 1fwx_A 358 NIE 360 (595)
T ss_dssp EHH
T ss_pred Ehh
Confidence 998
No 251
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.80 E-value=5e-05 Score=65.34 Aligned_cols=231 Identities=3% Similarity=-0.075 Sum_probs=138.2
Q ss_pred EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe-cCCCeEEEEEcCCCcCccc
Q 016547 46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSA 124 (387)
Q Consensus 46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~ 124 (387)
+|+.+. ...|+..+++.. .......... .+..++|++.+..|..+ ...+.|..+++......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~------------~~~~~~~~~~--~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-- 147 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-- 147 (400)
T ss_dssp EEEEEE-TTEEEEECTTSC------------SCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred eeEEec-cceeEEEccCCc------------ceeEeccccC--cceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--
Confidence 344333 357888888766 3333333333 35799999866655544 45678888887642100
Q ss_pred cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547 125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 204 (387)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 204 (387)
................+++.+.+++++++-...+.|.+.+++...
T Consensus 148 ----------------------------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~- 192 (400)
T 3p5b_L 148 ----------------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK- 192 (400)
T ss_dssp ----------------------------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-
T ss_pred ----------------------------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-
Confidence 000122222344677889987555778887888999999987654
Q ss_pred ceeEEeeccCCCeeEEEecCCCCCeEEEee-C-CCeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEE
Q 016547 205 PVIKVEKAHDADLHCVDWNPLDDNLILTGS-A-DNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s 281 (387)
..............|+++| .+..|.... . .+.|...++.. .....+ ...-...+.|++++++..|+++
T Consensus 193 -~~~l~~~~~~~P~~iavdp-~~g~ly~td~~~~~~I~~~~~dG-------~~~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 193 -RKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp -EEEEEECSSCCEEEEEEET-TTTEEEEEECSSSCCEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred -eEEEEeCCCCCcceEEEec-ccCeEEEEeCCCCCEEEEEeCCC-------CccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 2233333445678999999 555554444 2 36788888763 333333 2222467899999988888888
Q ss_pred ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
-...+.|..+|+...... .+...........++++ ++..++.+-.. .+.|..++..
T Consensus 264 D~~~~~I~~~d~dG~~~~-------------~~~~~~~~l~~P~gl~v--~~~~lywtd~~-------~~~V~~~~~~ 319 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNRK-------------TILEDEKRLAHPFSLAV--FEDKVFWTDII-------NEAIFSANRL 319 (400)
T ss_dssp ETTTTEEEEEETTSCCCE-------------EEEECSSTTSSEEEEEE--ETTEEEEEESS-------SCSEEEEESS
T ss_pred ECCCCEEEEEeCCCCccE-------------EEEeCCCCCCCCEEEEE--eCCEEEEecCC-------CCeEEEEEcC
Confidence 778889999998753221 12221122334556766 34566654433 3778888754
No 252
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.80 E-value=2.8e-06 Score=72.77 Aligned_cols=267 Identities=12% Similarity=0.048 Sum_probs=136.9
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--------CCce-EEEEECCCCCEEEEecCCCeEEEE
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAE-FALAMCPTEPYVLSGGKDKSVVLW 114 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~~v-~~~~~~~~~~~l~s~~~d~~i~vw 114 (387)
+..|.+++.++.|..+|.++++ .+....... ...+ ..... ++..++.++.++.|..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~------------~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~ 118 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK------------EIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYAL 118 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC------------EEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc------------eeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEE
Confidence 3466677788999999999883 322222211 1122 12222 45677778889999999
Q ss_pred EcCCCcCccccCCCcccC--CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe-----EEEEEccCCCeeEEE
Q 016547 115 SIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCS 187 (387)
Q Consensus 115 d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~ 187 (387)
|.++++............ +......+... ...+.+...+..+++.+-.+....... ...... + ..++.
T Consensus 119 d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~--~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~--~~v~~ 193 (376)
T 3q7m_A 119 NTSDGTVAWQTKVAGEALSRPVVSDGLVLIH--TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F--GAAVV 193 (376)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEETTEEEEE--CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T--TEEEE
T ss_pred ECCCCCEEEEEeCCCceEcCCEEECCEEEEE--cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C--CEEEE
Confidence 998876543322211100 00000111111 112223333333333333322211110 111222 2 35777
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCC--C--eeE---EEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDA--D--LHC---VDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~--i~~---~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+..++.+..+|.++++ ..-....... . +.. +...| ..+..+++++.++.+..+|.++ ++.+...
T Consensus 194 g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~ 265 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKR 265 (376)
T ss_dssp CCTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEE
T ss_pred EcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeec
Confidence 8889999999999887 2222221110 0 000 00011 0246677788899999999988 7776655
Q ss_pred ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEE
Q 016547 260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 338 (387)
.. .....+... +..++ .++.++.+..+|..++... .... .....+...... +..++
T Consensus 266 ~~--~~~~~~~~~--~~~l~-~~~~~g~l~~~d~~tG~~~---------------w~~~~~~~~~~~~~~~~--~~~l~- 322 (376)
T 3q7m_A 266 EL--GSVNDFIVD--GNRIY-LVDQNDRVMALTIDGGVTL---------------WTQSDLLHRLLTSPVLY--NGNLV- 322 (376)
T ss_dssp CC--CCEEEEEEE--TTEEE-EEETTCCEEEEETTTCCEE---------------EEECTTTTSCCCCCEEE--TTEEE-
T ss_pred cC--CCCCCceEE--CCEEE-EEcCCCeEEEEECCCCcEE---------------EeecccCCCcccCCEEE--CCEEE-
Confidence 42 223444443 44454 5667899999999875332 1111 111122222222 45566
Q ss_pred EecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547 339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL 373 (387)
Q Consensus 339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~ 373 (387)
.++.+|.|.++|.. +++.+...
T Consensus 323 -------v~~~~g~l~~~d~~------tG~~~~~~ 344 (376)
T 3q7m_A 323 -------VGDSEGYLHWINVE------DGRFVAQQ 344 (376)
T ss_dssp -------EECTTSEEEEEETT------TCCEEEEE
T ss_pred -------EEeCCCeEEEEECC------CCcEEEEE
Confidence 45556899999988 56555443
No 253
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.80 E-value=2.2e-06 Score=73.37 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=115.1
Q ss_pred CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547 44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 123 (387)
Q Consensus 44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 123 (387)
+..+..++.++.|..+|.+++ +.......... ....... .+..++.++.++.|..+|..++....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG------------~~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDG------------TVAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW 167 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTC------------CEEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC------------CEEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 345667788899999999988 33333332221 1111112 24467777889999999998876543
Q ss_pred ccCCCcccC-------CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-------CeEEEEEcc--CCCeeEEE
Q 016547 124 ATDPATAKS-------AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-------TVEDVTFCP--SSAQEFCS 187 (387)
Q Consensus 124 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~~ 187 (387)
......... +......+... ...+.+...+..+++.+-....... .+..+.-.| .+ ..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~ 244 (376)
T 3q7m_A 168 TVNLDMPSLSLRGESAPTTAFGAAVVG--GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFA 244 (376)
T ss_dssp EEECCC-----CCCCCCEEETTEEEEC--CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEE
T ss_pred EEeCCCCceeecCCCCcEEECCEEEEE--cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEE
Confidence 332211100 00000111111 1122222233333333322221100 000000011 12 35777
Q ss_pred ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-cceE
Q 016547 188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAV 266 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~i 266 (387)
++.++.+..+|.++++ ...... ......+.. .+..+.+++.++.|..+|..+ ++.+...... ...+
T Consensus 245 ~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~ 311 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHRLL 311 (376)
T ss_dssp ECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTSCC
T ss_pred EecCcEEEEEECCCCc--EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCCcc
Confidence 7789999999999887 232222 223444443 456778888899999999988 7766655421 1222
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
...... +..+ ..++.+|.+.++|..++
T Consensus 312 ~~~~~~--~~~l-~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 312 TSPVLY--NGNL-VVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CCCEEE--TTEE-EEECTTSEEEEEETTTC
T ss_pred cCCEEE--CCEE-EEEeCCCeEEEEECCCC
Confidence 222222 3334 47778999999999885
No 254
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=3.1e-05 Score=66.30 Aligned_cols=203 Identities=3% Similarity=-0.053 Sum_probs=124.4
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~ 109 (387)
...+..++|.+.++.++++-...+.|..++.+.. .....+..... ....+++.+.+..| ++-...+
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~------------~~~~~~~~~~~-~p~glavd~~~g~lY~~d~~~~ 181 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS------------NVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTS 181 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------CEEEEECSSCS-CCCCEEEETTTTEEEEEETTTT
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC------------CcEEEEeCCCC-CccEEEEEeCCCeEEEEcCCCC
Confidence 4557889999867777777777888999998766 22222221111 23478888755544 4445567
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.+.+++.... ...+.........+++.|.++.++++-.
T Consensus 182 ~I~~~~~dg~~~----------------------------------------~~l~~~~l~~P~giavdp~~g~ly~td~ 221 (386)
T 3v65_B 182 RIEVANLDGAHR----------------------------------------KVLLWQSLEKPRAIALHPMEGTIYWTDW 221 (386)
T ss_dssp EEEECBTTSCSC----------------------------------------EEEECSSCSCEEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCce----------------------------------------EEeecCCCCCCcEEEEEcCCCeEEEecc
Confidence 787777653211 0112222345789999987756666665
Q ss_pred CC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 190 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 190 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
.. +.|...++.... ........-...+.|+++|..+.++++-+..+.|..+|+.. ......+.........
T Consensus 222 ~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~g 293 (386)
T 3v65_B 222 GNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFA 293 (386)
T ss_dssp SSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSEEE
T ss_pred CCCCEEEEEeCCCCC--cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCceE
Confidence 55 789888887544 22222233445789999983444555555567899998764 2222222222334567
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+++. .+ .++++....+.|..+|...+
T Consensus 294 iav~-~~-~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 294 ITVF-ED-SLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEE-TT-EEEEEETTTTEEEEEETTTC
T ss_pred EEEE-CC-EEEEeeCCCCeEEEEECCCC
Confidence 7773 33 47778888889999885443
No 255
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=1.7e-06 Score=79.88 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=95.2
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccC-----------CCe------------------------eEEEecCCCC
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-----------ADL------------------------HCVDWNPLDD 227 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~ 227 (387)
..++.++.+|.++++|.++++. +....... .++ ..++++| +.
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~ 404 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT 404 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred eEEEEECCCCEEEEEECCCCCE--eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence 5788899999999999999882 22221110 000 2578888 77
Q ss_pred CeEEEeeCC-------------------------------------------CeEEEEEeccCCCCCCCCceEEeccccc
Q 016547 228 NLILTGSAD-------------------------------------------NSVRMFDRRNLTSNGVGSPINKFEGHSA 264 (387)
Q Consensus 228 ~~l~~~~~d-------------------------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 264 (387)
.++++...+ |.|..||+.+ ++.+-++. +..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t------G~~~W~~~-~~~ 477 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA------QKAAWSVE-HVS 477 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT------TEEEEEEE-ESS
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC------CcEEeecC-CCC
Confidence 777765432 7799999988 77777665 333
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEecCC
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDD 343 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s~d 343 (387)
++....+...+..+ +.++.||.+++||.++++. +..+. ++.....-+.|..+|+.+++..+.-
T Consensus 478 ~~~~g~~~~~g~~v-~~g~~dg~l~a~D~~tG~~---------------lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~ 541 (677)
T 1kb0_A 478 PWNGGTLTTAGNVV-FQGTADGRLVAYHAATGEK---------------LWEAPTGTGVVAAPSTYMVDGRQYVSVAVGW 541 (677)
T ss_dssp SCCCCEEEETTTEE-EEECTTSEEEEEETTTCCE---------------EEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CCcCcceEeCCCEE-EEECCCCcEEEEECCCCce---------------eeeeeCCCCcccCCEEEEeCCEEEEEEeccC
Confidence 44455566677754 4678999999999998633 33332 2222334566778887666543220
Q ss_pred ---------CCCCCCCceEEEEecCC
Q 016547 344 ---------CDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 344 ---------~~tg~~dg~i~iw~~~~ 360 (387)
.......+.+.+|.+..
T Consensus 542 ~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 542 GGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CccccccccccccCCCCeEEEEeccc
Confidence 00011147889998873
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.77 E-value=5.3e-05 Score=63.89 Aligned_cols=202 Identities=3% Similarity=-0.049 Sum_probs=125.4
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~ 109 (387)
...+..++|.+.++.++.+-...+.|..++.+.. .....+..... ....+++.+.+..| ++-...+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~------------~~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~~ 138 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS------------NVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTS 138 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEECSSCS-CCCEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCC------------CceEEEeCCCC-CccEEEEecCCCeEEEEcCCCC
Confidence 3457889999867777777777888999998776 22222222112 23588888755544 4555567
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.+.+++..... ............+++.|.++.++.+-.
T Consensus 139 ~I~~~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~g~ly~td~ 178 (349)
T 3v64_C 139 RIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWTDW 178 (349)
T ss_dssp EEEEEETTSCSCE----------------------------------------EEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred eEEEEcCCCCceE----------------------------------------EEEeCCCCCcceEEEecCcCeEEEecc
Confidence 8998887642110 111222345689999987657777766
Q ss_pred CC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 190 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 190 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
.. +.|...++..... .......-...+.|+++|..+.++++-...+.|..+|+.. ......+...-.....
T Consensus 179 ~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P~g 250 (349)
T 3v64_C 179 GNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFA 250 (349)
T ss_dssp SSSCEEEEEETTSCSC--EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSEEE
T ss_pred CCCCEEEEEeCCCCCc--EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCceE
Confidence 66 8899998875441 2222223445789999983444445545567899998764 2222222222334567
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+++. . ..++++-...+.|..++..+
T Consensus 251 iav~-~-~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 251 ITVF-E-DSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEE-T-TEEEEEETTTTEEEEEETTT
T ss_pred EEEE-C-CEEEEecCCCCeEEEEEccC
Confidence 7773 3 34777887888898888544
No 257
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.77 E-value=2.2e-06 Score=79.24 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=53.0
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 315 (387)
+|.|+.||+.+ ++.+-++..+. ++....+...+.. ++.++.||.++.||.++++. +.
T Consensus 454 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~taggl-vf~gt~dg~l~a~D~~tG~~---------------lw 510 (689)
T 1yiq_A 454 SGKLIAWDPVK------QQAAWEVPYVT-IFNGGTLSTAGNL-VFEGSADGRVIAYAADTGEK---------------LW 510 (689)
T ss_dssp EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTTE-EEEECTTSEEEEEETTTCCE---------------EE
T ss_pred ceeEEEEECCC------CCeEeEccCCC-CccCccceECCCE-EEEECCCCcEEEEECCCCcc---------------ce
Confidence 37799999988 77777766433 2333345556664 55789999999999998633 33
Q ss_pred eecc-CCCCeeEEEEccCCCeEEEEe
Q 016547 316 QHAG-HRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 316 ~~~~-~~~~v~~~~~~~~~~~l~~s~ 340 (387)
.+.. +.....-+.|..+|+..++..
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEEEEE
Confidence 3332 222234567778887666554
No 258
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.76 E-value=4.5e-05 Score=63.27 Aligned_cols=222 Identities=5% Similarity=-0.007 Sum_probs=133.2
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
...|+..+++.... .....+.+-. ....++|.+.+..|. +-...+.|..++++.....
T Consensus 12 ~~~I~~i~l~~~~~----------~~~~~~~~~~--~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------- 70 (318)
T 3sov_A 12 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------- 70 (318)
T ss_dssp EEEEEEEETTCTTS----------CCEEEEEEEE--EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------
T ss_pred cCeEEEEECCCCce----------EEEEEecCCC--ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------
Confidence 45788888876520 1112222222 245899998655554 4456678888887643110
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 211 (387)
...+.........+++.+.+++++++-...+.|.++++..... .....
T Consensus 71 ------------------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~ 118 (318)
T 3sov_A 71 ------------------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFW 118 (318)
T ss_dssp ------------------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC
T ss_pred ------------------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEe
Confidence 0111112234567888876557778877888999999876542 22222
Q ss_pred ccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeE
Q 016547 212 AHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLL 288 (387)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i 288 (387)
........++++| .+..|..+. ..+.|..+++. +.....+ ...-...+.+++++++..|+.+-+..+.|
T Consensus 119 ~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~d-------G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I 190 (318)
T 3sov_A 119 QELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMD-------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190 (318)
T ss_dssp SSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETT-------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcC-------CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence 3445678999998 555555544 25778877776 3333333 22224568999999888788888888999
Q ss_pred EEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 289 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..+|+...... .+. .+......++++. +..++.+-. ..+.|..++..
T Consensus 191 ~~~d~dG~~~~-------------~~~--~~~~~~P~glav~--~~~lywtd~-------~~~~V~~~~~~ 237 (318)
T 3sov_A 191 HKSNLDGTNRQ-------------AVV--KGSLPHPFALTLF--EDILYWTDW-------STHSILACNKY 237 (318)
T ss_dssp EEEETTSCSCE-------------EEE--CSCCSCEEEEEEE--TTEEEEEET-------TTTEEEEEETT
T ss_pred EEEcCCCCceE-------------EEe--cCCCCCceEEEEe--CCEEEEEec-------CCCeEEEEECC
Confidence 99998753221 111 1223445677764 345555432 33778888775
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.74 E-value=5.7e-06 Score=77.49 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=107.7
Q ss_pred cEEEEEec-CCCCcEEEEec-CCC----cEEEEeccCC-CCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547 33 EVNRIREL-PQNTKIVATHT-DSP----DVLIWDVEAQ-PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 105 (387)
Q Consensus 33 ~v~~i~~~-~~~~~~l~t~~-~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~ 105 (387)
.+...+|+ | ++++||-+. .+| +|+++|+.++ +... .. +.. ....+.|+|||+.|+..
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------~~---~~~----~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------DK---VSG----TNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------CC---EEE----ECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------cc---ccC----ceeeEEEecCCCEEEEE
Confidence 67889999 8 787777443 233 5999999887 4211 11 111 12368899999988776
Q ss_pred cCC-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEcc
Q 016547 106 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP 179 (387)
Q Consensus 106 ~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 179 (387)
..| ..|.++++.++... ....+. ........+.|+|
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred EECCCCCCCEEEEEECCCCchh--------------------------------------cEEEEecCCCceEEEEEECC
Confidence 654 25667776543210 001111 1223456789999
Q ss_pred CCCeeEEEec--CCCeEEEEEccCCCCce--eEEeeccCCCeeEEEecCCCCCeEEEeeCC--C--eEEEEEeccCCCCC
Q 016547 180 SSAQEFCSVG--DDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSAD--N--SVRMFDRRNLTSNG 251 (387)
Q Consensus 180 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g--~i~~~d~~~~~~~~ 251 (387)
++..++++.. ....|.++|+.++.... ............++.|+. ++.+++....+ + .|..+|+.+
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~----- 354 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ----- 354 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS-----
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC-----
Confidence 9954444442 24468888988753212 222233344555666554 44445554444 3 455555543
Q ss_pred CCCceEE-eccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 252 VGSPINK-FEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 252 ~~~~~~~-~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
...... +-.+.. .+..+.+. +..|+++...++..++|-
T Consensus 355 -~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 355 -PSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp -TTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred -cccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 111122 222322 45555554 556777888888655543
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.71 E-value=1.4e-05 Score=66.13 Aligned_cols=217 Identities=13% Similarity=0.033 Sum_probs=124.0
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
....++|+++++.+++-..++.|..||...... ..+ ..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~~~-~~ 70 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------IHA-TV 70 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------EEE-EC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------EEE-eC
Confidence 357899999998777776788998888753210 111 11
Q ss_pred CCCeEEEEEccCCCeeEEEecC-C-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGD-D-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
......+++.+++ +++++... + ..|..+|..+++....... ........++..+ ++..+++-..++.|..+|...
T Consensus 71 ~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 71 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT
T ss_pred CCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCC
Confidence 2357889999998 55555433 2 2477777766662111111 1222334555555 454455544688888888754
Q ss_pred CCCCCCCC-ceEEe---------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547 247 LTSNGVGS-PINKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 316 (387)
Q Consensus 247 ~~~~~~~~-~~~~~---------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 316 (387)
+. .+... ...-...+.+ ++++++|+++-...+.|..|++...+.. .....+..
T Consensus 148 ------~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~ 210 (306)
T 2p4o_A 148 ------PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVE 210 (306)
T ss_dssp ------TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEE
T ss_pred ------CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEec
Confidence 21 11100 0011234455 7888888888888899999998752111 00111211
Q ss_pred eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchh--hhhhhccCceEEEeeec
Q 016547 317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV--LAELEKFKAHVISCTSK 386 (387)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~f~ 386 (387)
+ .....++++++|..++ + ....+.|.+++.. ++. +..+...-...++++|.
T Consensus 211 ~----~~P~gi~vd~dG~l~v-a-------~~~~~~V~~~~~~-------G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 211 Q----TNIDDFAFDVEGNLYG-A-------THIYNSVVRIAPD-------RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp S----CCCSSEEEBTTCCEEE-E-------CBTTCCEEEECTT-------CCEEEEECGGGTCTTEEEEEEC
T ss_pred c----CCCCCeEECCCCCEEE-E-------eCCCCeEEEECCC-------CCEEEEeecccccCCceEEEEe
Confidence 1 3467789999987544 3 2234789998865 332 22233223456777774
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.70 E-value=4e-06 Score=77.36 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=48.5
Q ss_pred EEEecCCCCcEEEEecCCC-----------cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547 36 RIRELPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 36 ~i~~~~~~~~~l~t~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s 104 (387)
.+++.+.++++++.|+.+. .+.+||..+.+ ...+..+.........++++..+++.++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----------VSDRTVTVTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----------BCCCEEEECSCCCSSCEEEECTTSCEEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc----------EEeCcccCCCCCCccccccCCCCCCEEEe
Confidence 4455654778888887543 58889988772 23333343322222335788889999999
Q ss_pred ecC-CCeEEEEEcCCC
Q 016547 105 GGK-DKSVVLWSIQDH 119 (387)
Q Consensus 105 ~~~-d~~i~vwd~~~~ 119 (387)
|+. +..+.+||..+.
T Consensus 260 GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSD 275 (656)
T ss_dssp CSSSTTCEEEEEGGGT
T ss_pred CCCCCCceEEecCcCC
Confidence 884 468999998754
No 262
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.68 E-value=9.8e-05 Score=68.88 Aligned_cols=224 Identities=4% Similarity=-0.059 Sum_probs=132.9
Q ss_pred CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547 54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKS 132 (387)
Q Consensus 54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 132 (387)
..|+..++... .......... .+..|+|.+.+..| ++-...+.|+.+++......
T Consensus 404 ~~Ir~i~l~~~------------~~~~l~~~~~--~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------- 459 (791)
T 3m0c_C 404 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------- 459 (791)
T ss_dssp SSEEEECTTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred cceeEeeccCC------------cceeeecCCC--ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----------
Confidence 45777777655 3333344433 35699999865554 45455678888887642100
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547 133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212 (387)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 212 (387)
......+.........|++.+.+++++++-...+.|.+.++.... .......
T Consensus 460 --------------------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~~ 511 (791)
T 3m0c_C 460 --------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE 511 (791)
T ss_dssp ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred --------------------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEeC
Confidence 001122222334567788887776788888888999999987654 2223333
Q ss_pred cCCCeeEEEecCCCCCeEEEee-CC-CeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547 213 HDADLHCVDWNPLDDNLILTGS-AD-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~ 289 (387)
.......|+++| ....|+... .. +.|...++. +.....+. ..-.....|++.+.+..|+++-.....|.
T Consensus 512 ~l~~P~gIaVDp-~~g~LYwtD~g~~~~I~~~~~d-------G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 512 NGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLN-------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp TTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETT-------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCcceEEEec-CCCCEEEecCCCCCeEEEEecC-------CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 445688999999 544444443 33 678888876 34433332 22246789999988877887877788999
Q ss_pred EEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..++...... .+....+.-....+|++. +.+|+++-.. .+.|...+..
T Consensus 584 ~~d~dG~~~~-------------~v~~~~~~l~~P~glav~--~~~lYwtD~~-------~~~I~~~dk~ 631 (791)
T 3m0c_C 584 SIDVNGGNRK-------------TILEDEKRLAHPFSLAVF--EDKVFWTDII-------NEAIFSANRL 631 (791)
T ss_dssp EEETTSCSCE-------------EEEECTTTTSSEEEEEEE--TTEEEEEETT-------TTEEEEEETT
T ss_pred EEecCCCceE-------------EEecCCCccCCCCEEEEe--CCEEEEEECC-------CCEEEEEeCC
Confidence 9998753221 121111122234566653 4466664433 3777777654
No 263
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.61 E-value=3.2e-06 Score=77.90 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=48.3
Q ss_pred EEEEEccCCCeeEEEecCCC-------------------eEEEEEccCCCCceeEEeec--cC-------CCeeEEEecC
Q 016547 173 EDVTFCPSSAQEFCSVGDDS-------------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNP 224 (387)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~--~~-------~~i~~~~~~~ 224 (387)
..+++.|+. .+++.++.++ .|..+|.++++. .-.+.. |. .++....+..
T Consensus 233 ~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~~~~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 233 DSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp SCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred cceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEeecCCCccccccCCCCcEEEEecc
Confidence 356777776 5666666665 499999999883 322222 22 2222223333
Q ss_pred CCCC---eEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547 225 LDDN---LILTGSADNSVRMFDRRNLTSNGVGSPIN 257 (387)
Q Consensus 225 ~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 257 (387)
+++ .++.++.+|.++++|..+ ++.+.
T Consensus 310 -~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~ 338 (668)
T 1kv9_A 310 -DGKPRKVLMQAPKNGFFYVLDRTN------GKLIS 338 (668)
T ss_dssp -TTEEEEEEEECCTTSEEEEEETTT------CCEEE
T ss_pred -CCcEEEEEEEECCCCEEEEEECCC------CCEec
Confidence 454 688999999999999988 66653
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.59 E-value=0.00018 Score=59.73 Aligned_cols=203 Identities=4% Similarity=-0.058 Sum_probs=123.9
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-EEEecCCCe
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKS 110 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l~s~~~d~~ 110 (387)
..+.+++|.+.++.++.+-...+.|..++.+.... ....+...-. ....+++.+.+.. .++-...+.
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~ 102 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNR 102 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS-CCCEEEEETTTTEEEEEETTTTE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC-CccEEEEEcCCCeEEEEECCCCE
Confidence 45778999986777778877788999999876521 1111211111 2357888875544 445556788
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG- 189 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~- 189 (387)
|.+.+++..... ............+++.|.++.++.+-.
T Consensus 103 I~~~~~dG~~~~----------------------------------------~l~~~~~~~P~giavdp~~g~ly~td~~ 142 (318)
T 3sov_A 103 IEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDWG 142 (318)
T ss_dssp EEEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred EEEEECCCCcEE----------------------------------------EEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 999988642110 111123345689999987646555542
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 268 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (387)
..+.|...++..... .......-...+.|+++| ++..|..+ +..+.|..+|+.. ..........-.....
T Consensus 143 ~~~~I~r~~~dG~~~--~~~~~~~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~g 213 (318)
T 3sov_A 143 EVPKIERAGMDGSSR--FIIINSEIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDG------TNRQAVVKGSLPHPFA 213 (318)
T ss_dssp SSCEEEEEETTSCSC--EEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS------CSCEEEECSCCSCEEE
T ss_pred CCCEEEEEEcCCCCe--EEEEECCCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCC------CceEEEecCCCCCceE
Confidence 367888888765431 222222334578999998 55555444 4568899999863 2222222222344567
Q ss_pred EEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+++.. ..++.+-...+.|..++..++.
T Consensus 214 lav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 214 LTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 77753 3477787788999999986543
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.57 E-value=2.4e-05 Score=65.33 Aligned_cols=202 Identities=12% Similarity=0.037 Sum_probs=115.4
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecC---
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGK--- 107 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~--- 107 (387)
+.+..+++.+.+++++++... +.|..+|..++... .+ .....+........+++.+ +|+..++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~-~~--------~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHAT-QL--------ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECE-EE--------ESEETTEECSCEEEEEECTTTCCEEEEESCSSC
T ss_pred CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEE-Ee--------cccCCCCcccccceEEEecCCCEEEEECCcccc
Confidence 357889988645665555333 44888887654110 00 0001111112357889999 8876665432
Q ss_pred --------------CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547 108 --------------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 173 (387)
Q Consensus 108 --------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 173 (387)
++.|..+|..++.. ..+........
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~-----------------------------------------~~~~~~~~~p~ 188 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKET-----------------------------------------TLLLKELHVPG 188 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEE-----------------------------------------EEEEEEESCCC
T ss_pred cccccceehcccCCCceEEEEeCCCCEE-----------------------------------------EEeccCCccCc
Confidence 25566666543211 11111112345
Q ss_pred EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC----------CCeEEEEE
Q 016547 174 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----------DNSVRMFD 243 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~~~d 243 (387)
.++++|++..++++-...+.|..|++..........+....+ ...+++++ ++++.++... .+.|..+|
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d 266 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFD 266 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEEC
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEEC
Confidence 789999984455665677899999987532111222211223 78899999 8887766544 45677777
Q ss_pred eccCCCCCCCCceEEecccc----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 244 RRNLTSNGVGSPINKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.. ++.+..+.... ..+..+++ .++ .|+++...++.|.++++..
T Consensus 267 ~~-------G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 267 EF-------GNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TT-------SCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEEC--
T ss_pred CC-------CCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEeccc
Confidence 53 56666664332 34566666 344 4777777788999999875
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.55 E-value=0.00022 Score=59.18 Aligned_cols=230 Identities=7% Similarity=-0.021 Sum_probs=133.4
Q ss_pred ceeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE
Q 016547 2 FLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI 81 (387)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 81 (387)
|++.....+..++..... . .........+.+++|.+.++.++++-..++.|..+++...... ......
T Consensus 4 ll~~~~~~I~~i~~~~~~-~---~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------~~~~~~ 71 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSE-Y---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTV 71 (316)
T ss_dssp EEEECBSSEEEEETTSCC-C---EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEE
T ss_pred EEEECCCeEEEEECCCcc-e---EehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------cccEEE
Confidence 455555556555544322 1 1223445668899999866777778777899999998762000 011122
Q ss_pred EeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547 82 LTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 160 (387)
Q Consensus 82 ~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (387)
+...-. ....+++.+.+..| ++-...+.|.+.+++.....
T Consensus 72 ~~~~~~-~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-------------------------------------- 112 (316)
T 1ijq_A 72 ISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-------------------------------------- 112 (316)
T ss_dssp ECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE--------------------------------------
T ss_pred EeCCCC-CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE--------------------------------------
Confidence 222111 23588888755544 45456788999887632110
Q ss_pred CceeecCCCCCeEEEEEccCCCeeEEEecCC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCe
Q 016547 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNS 238 (387)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~ 238 (387)
............+++.|.++.++.+.... +.|...++.... ........-...+.|+++| ++..| ++-+..+.
T Consensus 113 --~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~-~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 113 --TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHS 187 (316)
T ss_dssp --EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEET-TTTEEEEEETTTTE
T ss_pred --EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEec-cCCEEEEEECCCCe
Confidence 11112234568999998765666665443 788888876443 1112222345678999998 55554 44445678
Q ss_pred EEEEEeccCCCCCCCCceEEec---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 239 VRMFDRRNLTSNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
|..+|+.. .....+. ..-.....+++. +.+++++-...+.|..++..++
T Consensus 188 I~~~d~dg-------~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 188 ISSIDVNG-------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEEETTS-------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEecCC-------CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCC
Confidence 99999873 2222221 112335677774 3457778888889999987654
No 267
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.54 E-value=2.4e-06 Score=79.00 Aligned_cols=156 Identities=3% Similarity=-0.104 Sum_probs=93.0
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CC-CeEEEEEeccCCC
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-AD-NSVRMFDRRNLTS 249 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~~~~ 249 (387)
...|++.+.+++++++-...+.|.+.++.... ..............|+++| .+.+|+.+. .. +.|..+++..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp-~~g~ly~td~~~~~~I~~~~~dG--- 528 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNG--- 528 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCS-SSSCCEECCCSSSCCEEBCCSSS---
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEcc-CCCcEEEcccCCCCeEEEEeCCC---
Confidence 45677776554667776677899999987654 2222222334568899999 544444433 33 6787777653
Q ss_pred CCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547 250 NGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 328 (387)
Q Consensus 250 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (387)
.....+. ..-...+.|+|+|++..|+++-+..+.|.++++...... .+...........+|+
T Consensus 529 ----~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-------------~~~~~~~~~~~P~gla 591 (699)
T 1n7d_A 529 ----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------------TILEDEKRLAHPFSLA 591 (699)
T ss_dssp ----CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-------------EECCCSSSCSSCCCCE
T ss_pred ----CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-------------EEEecCCcCCCceEeE
Confidence 2222221 112345689999987778888888889999998753221 1111111222344556
Q ss_pred EccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
+.. ..++++. ...+.|..++..
T Consensus 592 vd~--~~lywtd-------~~~~~V~~~d~~ 613 (699)
T 1n7d_A 592 VFE--DKVFWTD-------IINEAIFSANRL 613 (699)
T ss_dssp EET--TEEEEEC-------STTTCEEEEETT
T ss_pred EEC--CEEEEEe-------CCCCeEEEEEcc
Confidence 644 3566543 334889988875
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00026 Score=61.49 Aligned_cols=258 Identities=7% Similarity=0.024 Sum_probs=134.4
Q ss_pred cEEEEEecC-CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-CC-
Q 016547 33 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK- 109 (387)
Q Consensus 33 ~v~~i~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-d~- 109 (387)
....|++.| .++.+.++-.. +.|+.+|++.. ....... ... ....++|++++++|+.+.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~------------~v~~~~~-~~~-~P~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE------------YVSTVYS-GLS-KVRTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT------------EEEEEEC-CCS-CEEEEEECTTSSEEEEEECCSCT
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC------------EEEEEec-CCC-CcceEEEeCCCCEEEEEeCCCCc
Confidence 456788887 34555555433 78888888776 2222222 222 3579999999996666553 22
Q ss_pred ---eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 110 ---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 110 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.+.+.+.. +... ....+. .......+++.|+++.+++
T Consensus 203 ~~~~v~~~~~~-g~~~--------------------------------------~~~~l~-~~~~p~giavdp~~g~lyv 242 (430)
T 3tc9_A 203 DRPNNYILTRE-SGFK--------------------------------------VITELT-KGQNCNGAETHPINGELYF 242 (430)
T ss_dssp TSEEEEEEEGG-GTSC--------------------------------------SEEEEE-ECSSCCCEEECTTTCCEEE
T ss_pred ccceEEEEeCC-Ccee--------------------------------------eeeeec-cCCCceEEEEeCCCCEEEE
Confidence 23333322 1110 001111 1233567889994437777
Q ss_pred EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEEecc----
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---- 261 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---- 261 (387)
+-..++.|..++........... .........++++| +++ ++++-...+.|..++....... ...+..+.+
T Consensus 243 ~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g~ 318 (430)
T 3tc9_A 243 NSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKR--LTTPYIVCGQQGA 318 (430)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTE--ECCCEEEEECTTC
T ss_pred EECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCccccc--ccceEEEeccCCC
Confidence 77788899999987655211111 11224578999999 888 4455556788999887631000 000111111
Q ss_pred ------------ccceEEEEEEc--------CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee---eeec
Q 016547 262 ------------HSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF---FQHA 318 (387)
Q Consensus 262 ------------~~~~i~~~~~~--------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~ 318 (387)
...+-..++.. +++. |+++-.....|+.++.. +................. ....
T Consensus 319 ~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~~--G~v~~~~g~g~~~~~G~~dG~~~~~ 395 (430)
T 3tc9_A 319 KDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQ--GRVTTFAGRGSNGTSGYNDGDLRQE 395 (430)
T ss_dssp BCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECTT--SEEEEEEECCTTSSSSCBCEETTTT
T ss_pred CCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECCC--CcEEEEEeCCCCCCCcccCCCchhh
Confidence 11111145553 2344 66666667888888832 111110000000000000 0000
Q ss_pred cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..-.....++++|++..|+++-... +.|+.++++
T Consensus 396 ~~~~~P~giavd~~~g~lyVaD~~n-------~rIr~i~~e 429 (430)
T 3tc9_A 396 ARFNHPEGIVYDEERECFFIGDREN-------RRIRKIGYE 429 (430)
T ss_dssp CBCSSEEEEEEETTTTEEEEEEGGG-------TEEEEEEEC
T ss_pred cEeCCCcEEEEECCCCEEEEEECCC-------CeEEEEccC
Confidence 1122578999999766677655444 788888765
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.48 E-value=0.00034 Score=60.74 Aligned_cols=258 Identities=9% Similarity=0.035 Sum_probs=134.1
Q ss_pred cEEEEEecCC--CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC--
Q 016547 33 EVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-- 108 (387)
Q Consensus 33 ~v~~i~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-- 108 (387)
....|++.|. +++++++-.. +.|+.+|..++ .. ..+..... ....++++++|+++++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g------------~v-~~~~~~~~-~P~giavd~dG~lyVad~~~~~ 204 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ------------YV-DIKTTNIG-QCADVNFTLNGDMVVVDDQSSD 204 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTT------------EE-EEECCCCS-CEEEEEECTTCCEEEEECCSCT
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCC------------EE-EEeecCCC-CccEEEECCCCCEEEEcCCCCc
Confidence 4568888883 4665555444 88999998766 22 22222222 35799999999944443311
Q ss_pred -Ce-EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 109 -KS-VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 109 -~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
.. +...+.... . .....+. .-.....+++.|+++.+++
T Consensus 205 ~~~gv~~~~~~~~-~--------------------------------------~~~~~~~-~~~~P~giavd~~~G~lyv 244 (433)
T 4hw6_A 205 TNTGIYLFTRASG-F--------------------------------------TERLSLC-NARGAKTCAVHPQNGKIYY 244 (433)
T ss_dssp TSEEEEEECGGGT-T--------------------------------------CCEEEEE-ECSSBCCCEECTTTCCEEE
T ss_pred ccceEEEEECCCC-e--------------------------------------ecccccc-ccCCCCEEEEeCCCCeEEE
Confidence 11 222221110 0 0000111 1234567889994336666
Q ss_pred EecCCCeEEEEEccCCCCceeEEee-ccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccc--
Q 016547 187 SVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-- 262 (387)
Q Consensus 187 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-- 262 (387)
+-..++.|+.+|..++... ..... ........++++| +++.| ++-...+.|+.++....... ......+.+.
T Consensus 245 ~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g 320 (433)
T 4hw6_A 245 TRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRETGK--LAVPYIVCGQHS 320 (433)
T ss_dssp CBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTTCC--BCCCEEEEECTT
T ss_pred EECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCCcc--cCcEEEEEecCC
Confidence 7667889999998766520 11111 1122234699999 88844 44455688999886531100 0001111110
Q ss_pred -------------cceEEEEEE---------cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee---ee
Q 016547 263 -------------SAAVLCVQW---------SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF---QH 317 (387)
Q Consensus 263 -------------~~~i~~~~~---------~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~ 317 (387)
-.....+++ .+++. |+++-...+.|+.++... .................. ..
T Consensus 321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~ 397 (433)
T 4hw6_A 321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRS 397 (433)
T ss_dssp CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTS--EEEEEECCCTTCSSCCBCEETTT
T ss_pred CCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCC--CEEEEEeCCCCCccccCCCcccc
Confidence 123567888 56665 666777788999998532 211100000000000000 00
Q ss_pred ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
...-.....++++|.+..|+++-... +.|+.++++
T Consensus 398 ~~~~~~P~giavd~~~g~lyVaD~~n-------~rIr~i~~e 432 (433)
T 4hw6_A 398 QALFNHPTSIAYDMKRKCFYIGDCDN-------HRVRKIAPE 432 (433)
T ss_dssp TCBCSSEEEEEEETTTTEEEEEEGGG-------TEEEEEEEC
T ss_pred ccEeCCCcEEEEECCCCEEEEEeCCC-------CEEEEEecC
Confidence 01123468899995555566654433 788888765
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00053 Score=58.93 Aligned_cols=208 Identities=8% Similarity=-0.040 Sum_probs=124.0
Q ss_pred ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEec
Q 016547 28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGG 106 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~ 106 (387)
......+..|+|.+.++.++.+-...+.|+.+++...... ......+..... ....+++.+.+. ..++-.
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavD~~~~~lY~~d~ 178 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDS 178 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CCCEEEECSSCS-CEEEEEEETTTTEEEEEET
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--------CcceEEEeCCCC-CcccEEEEecCCceEEEEC
Confidence 3455678899999867777777777888998988763100 012222222222 356888887444 444555
Q ss_pred CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547 107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186 (387)
Q Consensus 107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 186 (387)
..+.|.+.+++..... ..+.........|++.|.++.++.
T Consensus 179 ~~~~I~~~~~~g~~~~----------------------------------------~l~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 179 VLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp TTTEEEEECTTTCSEE----------------------------------------EEEECSSCCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEeCCCCceE----------------------------------------EEEeCCCCCcceEEEecccCeEEE
Confidence 6778888887642110 111222345789999997646666
Q ss_pred Eec-CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEe-cc--
Q 016547 187 SVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKF-EG-- 261 (387)
Q Consensus 187 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~-~~-- 261 (387)
+-. ..+.|...++.... ........-...+.|++++ ++..|..+ ...+.|..+|+.. .....+ ..
T Consensus 219 td~~~~~~I~~~~~dG~~--~~~~~~~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~ 288 (400)
T 3p5b_L 219 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEK 288 (400)
T ss_dssp EECSSSCCEEEEETTSCS--CEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-------CCCEEEEECSS
T ss_pred EeCCCCCEEEEEeCCCCc--cEEEEECCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCC-------CccEEEEeCCC
Confidence 543 34788888887544 2222223335678999998 55555544 4567899999864 222222 21
Q ss_pred ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.-.....+++. +..++.+-...+.|..+|..++
T Consensus 289 ~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 289 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence 12334567763 3457778888888999986554
No 271
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.00073 Score=63.10 Aligned_cols=208 Identities=9% Similarity=-0.013 Sum_probs=124.0
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecC
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGK 107 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~ 107 (387)
.....+..|+|.+.++.++++-...+.|+.+++...... ......+...-. ....|++.+.++.|+ +-..
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD~~ 491 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSV 491 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC--------cceeEEEecCCC-CcceeeeeecCCcEEEEecC
Confidence 345667889998867777777777888998888753100 012222332222 245888887775554 4456
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
.+.|.+.+++..... ..+.........|++.|.++.++++
T Consensus 492 ~~~I~v~~ldG~~~~----------------------------------------~l~~~~l~~P~gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 492 LGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYWT 531 (791)
T ss_dssp TTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEEEE
T ss_pred CCeEEEEeCCCCeEE----------------------------------------EEEeCCCCCcceEEEecCCCCEEEe
Confidence 788999888642210 1112233457899999976466666
Q ss_pred ecC-CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-cc--cc
Q 016547 188 VGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EG--HS 263 (387)
Q Consensus 188 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~--~~ 263 (387)
-.. .+.|...++.... ........-...+.|++++..++++++=...+.|..+++.. .....+ .. .-
T Consensus 532 D~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-------~~~~~v~~~~~~l 602 (791)
T 3m0c_C 532 DWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRL 602 (791)
T ss_dssp ECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTTT
T ss_pred cCCCCCeEEEEecCCCc--eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-------CceEEEecCCCcc
Confidence 433 3788888887554 22233333457889999983444444444567888888864 333322 21 11
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
....+|++. +.+|+++-...+.|...|..++
T Consensus 603 ~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 603 AHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence 234466664 3357878888888988886654
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=3.8e-05 Score=71.96 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=89.9
Q ss_pred ceEEEEEC-CCCCEEEEecC-C----CeEEEEEcCCC-cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 89 AEFALAMC-PTEPYVLSGGK-D----KSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 89 ~v~~~~~~-~~~~~l~s~~~-d----~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
.+....|| |||++|+.+.. + .+|+++|+.++ ....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------------------------------- 216 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------------------------------- 216 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------------------------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------------------------
Confidence 46789999 99998884432 2 35999999864 2110
Q ss_pred ceeecCCCCCeEEEEEccCCCeeEEEecCC----CeEEEEEccCCCCceeEEee-ccCCCeeEEEecCCCCCeEEEeeC-
Q 016547 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA- 235 (387)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~- 235 (387)
..+. .....+.|+||+..++++...+ ..|.++++.++.......+. ........+.|+| ++++|+..+.
T Consensus 217 -~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~ 291 (751)
T 2xe4_A 217 -DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQS 291 (751)
T ss_dssp -CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEEC
T ss_pred -cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecC
Confidence 0011 1134688999995544443321 35888888765422122222 2234466889999 9988887663
Q ss_pred --CCeEEEEEeccCCCCCCCCc-eEEe-ccccceEEEEEEcCCCCeeEEEecCC----CeEEEEeCCC
Q 016547 236 --DNSVRMFDRRNLTSNGVGSP-INKF-EGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEK 295 (387)
Q Consensus 236 --dg~i~~~d~~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d----~~i~vwd~~~ 295 (387)
...|.++|+.+.. ... +..+ .........+.|+. +..+++....+ ..|..+|+..
T Consensus 292 ~~~~~l~~~d~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 292 PETAEVHLLDLRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSCEEEEEEESSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCceEEEEECCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3468888887621 122 1223 22334445555544 55455555443 3566666653
No 273
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.40 E-value=0.0015 Score=61.76 Aligned_cols=251 Identities=8% Similarity=0.046 Sum_probs=143.4
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
...|.++...+ ++.+.+ |+.+| |.+||..+.....-...... -..-....|.++...++|... .|+.++-
T Consensus 262 ~~~i~~i~~d~-~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~------~~~l~~~~i~~i~~D~~g~lW-igt~~~G 331 (795)
T 4a2l_A 262 SNYIRSLAMDS-QNRLWI-GTFND-LNIYHEGTDSFASYSSNPVE------NGSLSQRSVRSIFMDSQGGMW-LGTYFGG 331 (795)
T ss_dssp CSBEEEEEECT-TSCEEE-EESSC-EEEEETTTTEEEEECCCTTS------TTSCSSSCEEEEEECTTSCEE-EEESSSC
T ss_pred CCeEEEEEEcC-CCCEEE-EeCCh-hheEcCCCCeEEEEecCCCC------CCCCCCCcEEEEEEeCCcCEE-EEECCCC
Confidence 35689998777 555443 44454 88898766521000000000 001122368999999888754 4555677
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
|..++..+......... . ..-.-....|.++...+++ . +-.|+.
T Consensus 332 l~~~~~~~~~~~~~~~~-----------------------------~-----~~~~l~~~~V~~i~~d~~g-~-lWiGt~ 375 (795)
T 4a2l_A 332 LNYYHPIRNRFKNIRNI-----------------------------P-----YKNSLSDNVVSCIVEDKDK-N-LWIGTN 375 (795)
T ss_dssp EEEECGGGGSSEEECCC-----------------------------T-----TSSSCSCSSEEEEEECTTS-C-EEEEES
T ss_pred eEEeCCCcccceEEcCC-----------------------------C-----CCCCCCCCeeEEEEECCCC-C-EEEEEC
Confidence 88888654322110000 0 0000123568999888877 4 556777
Q ss_pred CCeEEEEEccCCCCceeEEee--------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec--
Q 016547 191 DSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-- 260 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-- 260 (387)
++-|..||..++. ...... .....|.++..++ ++++|.+|+.++-|..||..+ ++ +..+.
T Consensus 376 ~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~ 445 (795)
T 4a2l_A 376 DGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQR 445 (795)
T ss_dssp SSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTT
T ss_pred CCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecC
Confidence 7789999987765 221111 1235688998887 777577788877799999875 33 22232
Q ss_pred ---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547 261 ---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 261 ---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (387)
.....|.++...++|. |. .|+. +.+.+||.....-. ...... .+ ..-....|.++...+++...+
T Consensus 446 ~~~l~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~-~~~~~~--~~------~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGN-LW-LGTL-SALVRFNPEQRSFT-TIEKEK--DG------TPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp TSCCSCSCEEEEEECSSSC-EE-EEES-SCEEEEETTTTEEE-ECCBCT--TC------CBCCCCCEEEEEECTTCCEEE
T ss_pred CCCcCCCeeEEEEECCCCC-EE-EEec-CceeEEeCCCCeEE-Eccccc--cc------cccCCceEEEEEECCCCCEEE
Confidence 1345789999988888 44 3333 45888987653111 000000 00 011235788999998887666
Q ss_pred EEecCCCCCCCCCceEEEEecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+ . +-|..|+..
T Consensus 514 gt---------~-~Gl~~~~~~ 525 (795)
T 4a2l_A 514 GG---------E-EGLSVFKQE 525 (795)
T ss_dssp EE---------S-SCEEEEEEE
T ss_pred Ee---------C-CceEEEeCC
Confidence 32 1 347777765
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=3.8e-05 Score=69.29 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=35.6
Q ss_pred CeEEEEEccCCCCceeEEee--ccC-------CCeeEEEecCCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 192 SCLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~--~~~-------~~i~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+.|..+|.++++. .-.+. .|. ....-+...+ ++ ..++.++.+|.+.++|..+ ++.+..+
T Consensus 272 ~~v~Ald~~tG~~--~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~~w~~ 342 (571)
T 2ad6_A 272 MTIWGRDLDTGMA--KWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNREN------GNLIVAE 342 (571)
T ss_dssp TEEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTT------CCEEEEE
T ss_pred EEEEEEecCCCcE--EEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCC------CCEEeee
Confidence 3688999998872 22222 121 1111122223 45 3677888999999999988 6665554
No 275
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.33 E-value=0.0018 Score=59.11 Aligned_cols=221 Identities=6% Similarity=-0.034 Sum_probs=133.6
Q ss_pred CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcc
Q 016547 52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATA 130 (387)
Q Consensus 52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~ 130 (387)
....|+..++++. .....+....-.....++|++.+..|. +-..++.|..++++.....
T Consensus 13 ~~~~I~~i~l~~~------------~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-------- 72 (628)
T 4a0p_A 13 RRADIRRISLETN------------NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-------- 72 (628)
T ss_dssp ETTEEEEEESSCT------------TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------
T ss_pred eCCcEEEEECCCC------------CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------
Confidence 3457888888765 222222111111356999998766655 4446788888887642110
Q ss_pred cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe
Q 016547 131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE 210 (387)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 210 (387)
..+.........+++.+.+++++.+-...+.|.+.++..... ....
T Consensus 73 --------------------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--~~l~ 118 (628)
T 4a0p_A 73 --------------------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--QVLV 118 (628)
T ss_dssp --------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--EEEE
T ss_pred --------------------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--EEEE
Confidence 111111234567888776657778877889999999876542 2222
Q ss_pred eccCCCeeEEEecCCCCCeEEEeeC--CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeE
Q 016547 211 KAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLL 288 (387)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i 288 (387)
...-.....|+++| ....|..... .+.|...++.. .....+-..-.....|++++++..|+++-...+.|
T Consensus 119 ~~~l~~P~~iavdp-~~G~lY~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I 190 (628)
T 4a0p_A 119 WKDLDSPRALALDP-AEGFMYWTEWGGKPKIDRAAMDG-------SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI 190 (628)
T ss_dssp CSSCCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred eCCCCCcccEEEcc-CCCeEEEeCCCCCCEEEEEeCCC-------CceEEEECCCCCcceEEEccccCEEEEEECCCCEE
Confidence 23445678999999 5445554442 46677777663 33333322345678999999888888888888999
Q ss_pred EEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 289 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..+|+..... ..+ ........++++.. .+++++-. ..+.|...|..
T Consensus 191 ~~~d~dG~~~-------------~v~---~~~l~~P~glav~~--~~ly~tD~-------~~~~I~~~dk~ 236 (628)
T 4a0p_A 191 ESSNMLGLNR-------------EVI---ADDLPHPFGLTQYQ--DYIYWTDW-------SRRSIERANKT 236 (628)
T ss_dssp EEEETTSCSC-------------EEE---EECCSCEEEEEEET--TEEEEEET-------TTTEEEEEETT
T ss_pred EEEcCCCCce-------------EEe---eccCCCceEEEEEC--CEEEEecC-------CCCEEEEEECC
Confidence 9999976322 111 12223445777654 45665433 23777777754
No 276
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.28 E-value=0.0021 Score=58.49 Aligned_cols=157 Identities=3% Similarity=-0.044 Sum_probs=101.2
Q ss_pred eEEEEECCCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 90 EFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
...++|++.+..|+.+. ..+.|..++++.... ....+...
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------------------------~~~v~~~~ 82 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------------------VQNVVVSG 82 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------------------CEEEECSS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------------------------eEEEEeCC
Confidence 46999998776665544 467888888764210 00122222
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC--CCeEEEEEecc
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRN 246 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~ 246 (387)
......+++.+.+++++++-...+.|.+.++..... .......-.....|+++| .+..|..... .+.|...++.
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--~~l~~~~l~~P~~Iavdp-~~g~ly~tD~g~~~~I~r~~~d- 158 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMD- 158 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCCEEEET-TTTEEEEEECSSSCEEEEEETT-
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--EEEEeCCCCCCceEEEec-CCCeEEEeccCCCCEEEEEECC-
Confidence 346788999987657888888889999999876542 222223445678999999 5444444443 3566666655
Q ss_pred CCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 247 LTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+.....+ ...-...+.|++++++..|+++-...+.|...|+..
T Consensus 159 ------G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 159 ------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp ------SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred ------CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 3333333 222345789999998877888877888999999875
No 277
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.24 E-value=0.0037 Score=59.14 Aligned_cols=224 Identities=8% Similarity=0.031 Sum_probs=132.4
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-------ccCCCceEEEEECCCCCEEE
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-------GHQDNAEFALAMCPTEPYVL 103 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~v~~~~~~~~~~~l~ 103 (387)
...|.++...+ +++ |..|+.++-|..||..+.. ...... +-....|.++...++++.|.
T Consensus 356 ~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lW 421 (795)
T 4a2l_A 356 DNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQR------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVY 421 (795)
T ss_dssp CSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCC------------EEEECCC------CCSCSCEEEEEEETTTTEEE
T ss_pred CCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCc------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEE
Confidence 45689998776 555 4456677679999987652 111110 11123688999988888566
Q ss_pred EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547 104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183 (387)
Q Consensus 104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (387)
.|+.++-|..+|..++........ . . ......|.++...+++ .
T Consensus 422 igt~~~Gl~~~d~~~~~~~~~~~~------------------------------~----~--~l~~~~v~~i~~d~~g-~ 464 (795)
T 4a2l_A 422 IGTHAGGLSILHRNSGQVENFNQR------------------------------N----S--QLVNENVYAILPDGEG-N 464 (795)
T ss_dssp EEETTTEEEEEETTTCCEEEECTT------------------------------T----S--CCSCSCEEEEEECSSS-C
T ss_pred EEeCcCceeEEeCCCCcEEEeecC------------------------------C----C--CcCCCeeEEEEECCCC-C
Confidence 667667799999875432110000 0 0 0123568899888877 4
Q ss_pred eEEEecCCCeEEEEEccCCCCceeEEee-------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547 184 EFCSVGDDSCLILWDARVGTSPVIKVEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256 (387)
Q Consensus 184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 256 (387)
+.+ |+. +-+..||..+++ ...+. .....|.++..++ ++.+.+. +.. -+..||..+ ...
T Consensus 465 lwi-gt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWig-t~~-Gl~~~~~~~------~~~- 529 (795)
T 4a2l_A 465 LWL-GTL-SALVRFNPEQRS---FTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIG-GEE-GLSVFKQEG------LDI- 529 (795)
T ss_dssp EEE-EES-SCEEEEETTTTE---EEECCBCTTCCBCCCCCEEEEEECT-TCCEEEE-ESS-CEEEEEEET------TEE-
T ss_pred EEE-Eec-CceeEEeCCCCe---EEEccccccccccCCceEEEEEECC-CCCEEEE-eCC-ceEEEeCCC------CeE-
Confidence 444 334 458889987654 22221 1235788998887 6665554 444 488888875 332
Q ss_pred EEec-------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEE
Q 016547 257 NKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFH 328 (387)
Q Consensus 257 ~~~~-------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 328 (387)
.+. .....|.++...++|.. .+ ++.. .|..||.....-. ......+ ....|.++.
T Consensus 530 -~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wi-gT~~-Gl~~~d~~~~~~~-------------~~~~~~gl~~~~i~~i~ 592 (795)
T 4a2l_A 530 -QKASILPVSNVTKLFTNCIYEASNGII-WV-GTRE-GFYCFNEKDKQIK-------------RYNTTNGLPNNVVYGIL 592 (795)
T ss_dssp -EECCCSCSCGGGGSCEEEEEECTTSCE-EE-EESS-CEEEEETTTTEEE-------------EECGGGTCSCSCEEEEE
T ss_pred -EEecCCCCCCCCCCeeEEEEECCCCCE-EE-EeCC-CceeECCCCCcEE-------------EeCCCCCCchhheEEEE
Confidence 221 23457999999999984 33 3334 5888887653111 0111111 134688888
Q ss_pred EccCCCeEE
Q 016547 329 WNASDPWTV 337 (387)
Q Consensus 329 ~~~~~~~l~ 337 (387)
..++|...+
T Consensus 593 ~d~~g~lWi 601 (795)
T 4a2l_A 593 EDSFGRLWL 601 (795)
T ss_dssp ECTTSCEEE
T ss_pred ECCCCCEEE
Confidence 888887655
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.22 E-value=8.8e-05 Score=68.44 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=46.7
Q ss_pred EEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-CC----
Q 016547 35 NRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KD---- 108 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~-~d---- 108 (387)
.++++.. ++++++.|+. ++.+.+||..+..-. .+..+.... .-.+++..++++.++.|+ .+
T Consensus 246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~----------~~~~~~~~R--~~~s~~~~~dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWI----------PGPDMQVAR--GYQSSATMSDGRVFTIGGSWSGGVF 312 (656)
T ss_dssp CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEE----------ECCCCSSCC--SSCEEEECTTSCEEEECCCCCSSSC
T ss_pred ccccCCC-CCCEEEeCCCCCCceEEecCcCCcee----------ECCCCCccc--cccceEEecCCeEEEEeCcccCCcc
Confidence 3456666 7888998884 568999998876211 111111111 113556667899999888 44
Q ss_pred -CeEEEEEcCCCc
Q 016547 109 -KSVVLWSIQDHI 120 (387)
Q Consensus 109 -~~i~vwd~~~~~ 120 (387)
..+.+||..+..
T Consensus 313 ~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 313 EKNGEVYSPSSKT 325 (656)
T ss_dssp CCCEEEEETTTTE
T ss_pred cccceEeCCCCCc
Confidence 568999987754
No 279
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.21 E-value=0.00024 Score=65.53 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=36.7
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+|.|..||+.+ ++.+-+.... .......+...+..+ ..++.|+.++.||.+++.
T Consensus 437 ~g~l~A~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v-f~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 437 SGALLAWDPVK------QKAAWKVPYP-THWNGGTLSTAGNLV-FQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEEETTT------TEEEEEEEES-SSCCCCEEEETTTEE-EEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCC------CcEEEEccCC-CCCcCceeEeCCCEE-EEECCcccchhhhhhcCh
Confidence 47899999988 7776666532 222333334456644 578899999999999853
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.20 E-value=0.00041 Score=62.69 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=36.6
Q ss_pred CeEEEEEccCCCCceeEEeeccCC-------CeeEEEec-CCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~-------~i~~~~~~-~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+.|.-+|.++++..-......|.. ...-+... . ++ ..++.++.+|.+.++|.++ ++.+...
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~ 349 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTD------GALVSAN 349 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTT------CCEEEEE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEECCC------CCEeecc
Confidence 479999999988321122222211 11112222 3 56 5677788999999999988 6666544
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.19 E-value=2.3e-05 Score=72.55 Aligned_cols=206 Identities=8% Similarity=-0.036 Sum_probs=114.0
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecCCC
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK 109 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~ 109 (387)
...+..|+|.+..+.++++-...+.|+.+++.+..... .....+...-. ....|++.+.+. ++++-...+
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--------~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~~ 475 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLG 475 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C--------CCCCBCCSCC---CCCEECCCSSSBCEECCTTTS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc--------ceEEEEeCCCC-CcceEEEEeeCCcEEEEeccCC
Confidence 34567888888566666666667889999887521000 01111111111 124677775444 444445567
Q ss_pred eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547 110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189 (387)
Q Consensus 110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 189 (387)
.|.+.++...... ..+.........|++.|.++.++++-.
T Consensus 476 ~I~v~d~dg~~~~----------------------------------------~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 476 TVSVADTKGVKRK----------------------------------------TLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp CEEEEBSSSCCEE----------------------------------------EECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred eEEEEecCCCceE----------------------------------------EEEeCCCCCcceEEEccCCCcEEEccc
Confidence 8888887643111 011111223467888887645555543
Q ss_pred CC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---ccce
Q 016547 190 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAA 265 (387)
Q Consensus 190 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~~~~ 265 (387)
.. +.|...++..... .......-...+.|+++|..+.++++-+..+.|..+|+.. .....+.. .-..
T Consensus 516 ~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~~~ 586 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAH 586 (699)
T ss_dssp SSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-------SCCEEECCCSSSCSS
T ss_pred CCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-------CceEEEEecCCcCCC
Confidence 33 6788887765432 1112222345678999983455555555677899999864 22222211 1122
Q ss_pred EEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
...|++..+ .|+++....+.|..++..++
T Consensus 587 P~glavd~~--~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 587 PFSLAVFED--KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CCCCEEETT--EEEEECSTTTCEEEEETTTE
T ss_pred ceEeEEECC--EEEEEeCCCCeEEEEEccCC
Confidence 345555443 57778778889999987653
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.16 E-value=0.0015 Score=51.70 Aligned_cols=194 Identities=11% Similarity=0.081 Sum_probs=119.4
Q ss_pred eccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547 83 TGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 161 (387)
Q Consensus 83 ~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (387)
.+-.+ .+..++|+|++..|+ +...++.|...|.. +...
T Consensus 23 ~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~--------------------------------------- 61 (255)
T 3qqz_A 23 AGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI--------------------------------------- 61 (255)
T ss_dssp TTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE---------------------------------------
T ss_pred CCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE---------------------------------------
Confidence 34444 489999999876555 46667888888876 2211
Q ss_pred ceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-ceeEEe------eccCCCeeEEEecCCCCCeEEEe
Q 016547 162 RGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE------KAHDADLHCVDWNPLDDNLILTG 233 (387)
Q Consensus 162 ~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~ 233 (387)
..+. .-....-.|++.+++ .++++.-.++.+.++++..... ...... .........|+|+| .++.|.++
T Consensus 62 -~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va 138 (255)
T 3qqz_A 62 -RTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFF 138 (255)
T ss_dssp -EEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEE
T ss_pred -EEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEE
Confidence 1111 112457788998887 6667766778899998866542 011111 12334568999999 77666666
Q ss_pred eCCCeEEEEEeccCCCCCCCCceEEec-------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547 234 SADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306 (387)
Q Consensus 234 ~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~ 306 (387)
.......+|.++.... ...+..+. .+-..+.+++++|....+++.......+.++|.... ..
T Consensus 139 ~E~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~------ 207 (255)
T 3qqz_A 139 KEKNPIEVYKVNGLLS---SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VI------ 207 (255)
T ss_dssp EESSSEEEEEEESTTC---SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE------
T ss_pred ECcCCceEEEEccccc---CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EE------
Confidence 6665556666652110 11222221 122356899999988888888888999999997752 11
Q ss_pred CCCCceeeeeec-cC------CCCeeEEEEccCCCeEE
Q 016547 307 TNYPAGLFFQHA-GH------RDKVVDFHWNASDPWTV 337 (387)
Q Consensus 307 ~~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~l~ 337 (387)
....+. +. -.....|+|.++|...+
T Consensus 208 ------~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 208 ------GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp ------EEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred ------EEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence 122222 11 13668999999997444
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00021 Score=62.06 Aligned_cols=157 Identities=11% Similarity=0.142 Sum_probs=95.8
Q ss_pred CeEEEEEcc-CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC----eEEEEEe
Q 016547 171 TVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN----SVRMFDR 244 (387)
Q Consensus 171 ~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg----~i~~~d~ 244 (387)
....|+++| +++. |..+...+.|+.+|+.... +..+.........+++++ ++++|+++.. ++ .+..++.
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence 457889997 3424 4444444889999987765 333333456688999999 8885555554 22 2333443
Q ss_pred ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (387)
... ......+.. ......++++|++.+|+++-..++.|..++....... .+... +.....
T Consensus 213 ~g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-------------~~~~~-~~~~~P 272 (430)
T 3tc9_A 213 ESG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-------------PLFTI-QDSGWE 272 (430)
T ss_dssp GGT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-------------EEEEC-SSSSCC
T ss_pred CCc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------EEEEc-CCCCcc
Confidence 220 111122221 2234678899944447777777889999998753110 11111 122456
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
..++|+|++++|+++-... +.|..++.+
T Consensus 273 ~gia~~pdG~~lyv~d~~~-------~~I~~~~~d 300 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQ-------HYILRSDYD 300 (430)
T ss_dssp EEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred eeEEEcCCCCEEEEEECCC-------CEEEEEeCC
Confidence 8899999999777755443 899998876
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0032 Score=55.04 Aligned_cols=264 Identities=12% Similarity=0.053 Sum_probs=140.2
Q ss_pred cEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--CCceEEEEE-------CCCCCEE
Q 016547 33 EVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAM-------CPTEPYV 102 (387)
Q Consensus 33 ~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~-------~~~~~~l 102 (387)
....|+|.|. .++++++....+.|++.|++++ ........-. -.....++| ++++++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~------------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR------------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT------------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC------------EEEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence 4578899983 4566666555567888888876 2222222211 113579999 9999977
Q ss_pred EEecCCC-----e--EEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE
Q 016547 103 LSGGKDK-----S--VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 174 (387)
Q Consensus 103 ~s~~~d~-----~--i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 174 (387)
+.+...+ . |.+.+... +.... ......+..+ .....
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~--------------------------------~~~~~~v~~~----~~p~g 251 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDD--------------------------------RSDIQLIAAY----KQCNG 251 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCST--------------------------------TSCEEEEEEE----SCCCC
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceee--------------------------------cccceeeccC----CCceE
Confidence 7665543 2 44444221 00000 0000011111 23457
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEcc-------CCCC-----ce----e-EEe-eccCCCeeEEEecCCCCCeEEEe-eC
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDAR-------VGTS-----PV----I-KVE-KAHDADLHCVDWNPLDDNLILTG-SA 235 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~-----~~----~-~~~-~~~~~~i~~~~~~~~~~~~l~~~-~~ 235 (387)
++.+|+++.++++-..++.|..+|+. ++.. +. . ... .......+.|+|+| +++.|..+ +.
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~ 330 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVIN 330 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETT
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCC
Confidence 78899665778888888999999998 4542 00 1 111 12234568999999 88854444 45
Q ss_pred CCeEEEEEeccCCCCCCCCc--eEEeccc---c------------ceEE-EEEEc-------CCCCeeEEEecCCCeEEE
Q 016547 236 DNSVRMFDRRNLTSNGVGSP--INKFEGH---S------------AAVL-CVQWS-------PDKSSVFGSSAEDGLLNI 290 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~--~~~~~~~---~------------~~i~-~~~~~-------~~~~~ll~s~~~d~~i~v 290 (387)
.+.|+.++..... +.. ...+-+. . .... .++.. +++. |+++-..+.+|+.
T Consensus 331 ~h~I~kid~dg~~----~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~ 405 (496)
T 3kya_A 331 NHYFMRSDYDEIK----KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRK 405 (496)
T ss_dssp TTEEEEEEEETTT----TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEE
T ss_pred CCEEEEEecCCCc----ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEE
Confidence 6788887765311 110 0111111 0 1233 44444 3444 6667777889999
Q ss_pred EeCCCCCceeccCCCCC----------CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 291 WDYEKVGKKVEQGPRTT----------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 291 wd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
++... .......... ...... ......-.....|++++++..|+++=+ .++.|+.+++..
T Consensus 406 i~~~G--~v~TiaG~g~~~~~~~~~~~G~~dG~-~~~~a~f~~P~gIavd~~~g~lyVaD~-------~N~rIrki~~~~ 475 (496)
T 3kya_A 406 VTPEG--IVSTYAGRGASTSLADGNQWGTDDGD-LREVARFRDVSGLVYDDVKEMFYVHDQ-------VGHTIRTISMEQ 475 (496)
T ss_dssp ECTTC--BEEEEEESCTTHHHHHSCSCCCCCEE-TTTTCCCSSEEEEEEETTTTEEEEEET-------TTTEEEEEEECC
T ss_pred EeCCC--CEEEEecccccccccCccccccCCCC-chhhhhcCCCcEEEEECCCCEEEEEeC-------CCCEEEEEECCC
Confidence 98432 2111100000 000000 000111235689999997445555443 348999999983
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.15 E-value=0.0007 Score=55.39 Aligned_cols=215 Identities=8% Similarity=0.044 Sum_probs=122.5
Q ss_pred EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec-----cCCCceEEEEE---CCCCCEEEEec
Q 016547 35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-----HQDNAEFALAM---CPTEPYVLSGG 106 (387)
Q Consensus 35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~~v~~~~~---~~~~~~l~s~~ 106 (387)
.+++|.+.++.++++.-..|+|..||...+.... ..+.+ .....+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-----------~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-----------VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-----------ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-----------EecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 5678888677777776689999999987552110 01111 11113478999 68877776533
Q ss_pred -------------CCCeEEEEEcC---CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CC
Q 016547 107 -------------KDKSVVLWSIQ---DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HE 169 (387)
Q Consensus 107 -------------~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 169 (387)
.+..|..+|+. +++......... .... .+...+ -.
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~---------------------------~~~~-~~~~~g~~~ 136 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK---------------------------VQDE-FEKKAGKRP 136 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH---------------------------HHHH-HHHHHSSCC
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc---------------------------cccc-ccccccccc
Confidence 25778889987 443221110000 0000 000001 11
Q ss_pred CCeEEEEEccCCCeeEEEecCC-CeEEEEEccCCCCceeEEee-----ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTSPVIKVEK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d 243 (387)
.....++..++| +..++++.. +.|...+..... ...... ......+.|+++| +++.|++....|.+.-+|
T Consensus 137 ~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 137 FGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEE
T ss_pred cCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEc
Confidence 347899999998 778888877 887777765443 221111 1122367999999 888888887799999999
Q ss_pred eccCCCCCCCCceEEe-ccc---cceEEE-EEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 244 RRNLTSNGVGSPINKF-EGH---SAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~---~~~i~~-~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
++.+. ...+..- .+. -..... +.--.+|+.++++....+.+.+.+-...
T Consensus 213 ~~~pv----~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 213 VSKPY----AWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNW 266 (334)
T ss_dssp CSSSS----CCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTT
T ss_pred CCCCc----ceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCc
Confidence 88521 1012111 011 111223 3434567765777767777777766553
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.08 E-value=0.0059 Score=55.60 Aligned_cols=205 Identities=6% Similarity=-0.031 Sum_probs=119.8
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d 108 (387)
.-+.+..++|.+.++.++.+-...+.|..++++... .....+...-. ....+++.+.+..|+ +-...
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-----------~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~~ 105 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-----------SVQNVVVSGLL-SPDGLACDWLGEKLYWTDSET 105 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-----------ceEEEEeCCCC-CcCeEEEEecCCEEEEEeCCC
Confidence 445678999999677777776677889888887651 11122222212 357899998665554 44567
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
+.|.+.+++..... ......-.....|++.|.++.++.+-
T Consensus 106 ~~I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 106 NRIEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp TEEEEEETTSCSCE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEE----------------------------------------EEEeCCCCCCceEEEecCCCeEEEec
Confidence 89999998743211 11112234467899998764666664
Q ss_pred -cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceE
Q 016547 189 -GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAV 266 (387)
Q Consensus 189 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i 266 (387)
+..+.|...++.... ........-...+.|++++..++++++=...+.|..+|+.. .....+ .+.-...
T Consensus 146 ~g~~~~I~r~~~dG~~--~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-------~~~~~~~~~~~~~P 216 (619)
T 3s94_A 146 WGEVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------TNRQAVVKGSLPHP 216 (619)
T ss_dssp CSSSCEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC-------CEEC---------C
T ss_pred cCCCCEEEEEECCCCc--eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC-------CccEEEEeCCCCCc
Confidence 234677777776544 12222233456789999983344444444567888888764 211111 1111122
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
.+|++..+ +++.+-...+.|...|..++.
T Consensus 217 ~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 217 FALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp CCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred eEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 46677655 577777778889999987644
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.06 E-value=0.0015 Score=56.80 Aligned_cols=155 Identities=10% Similarity=0.131 Sum_probs=92.6
Q ss_pred EEEEECCC--CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547 91 FALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 168 (387)
Q Consensus 91 ~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (387)
..++|+|+ +..|+.+...+.|+.+|..++.. ..+...
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----------------------------------------~~~~~~ 180 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----------------------------------------DIKTTN 180 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----------------------------------------EEECCC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----------------------------------------EEeecC
Confidence 58899984 44455544447888888764322 122223
Q ss_pred CCCeEEEEEccCCCeeEEEecCC---C-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDD---S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~ 244 (387)
......+++.+++ +++++.... . .+...+...... ....+. .......++++|.++.++++-..++.|+.+|.
T Consensus 181 ~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 181 IGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT-ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC-CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred CCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee-cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 4558899999999 555554321 1 233334332221 111222 33456788999844555555556788999988
Q ss_pred ccCCCCCCCCceEEec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 245 RNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.+ +.....+. +....-..++|+|++++|+++-...+.|+.+++..
T Consensus 258 ~~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 258 AT------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp TT------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CC------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 75 43312221 11122346999999997787888889999988763
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.05 E-value=0.0025 Score=52.61 Aligned_cols=123 Identities=11% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCeEEEEE--ccCCC-eeEEEecCCCeEEEEEccCC---C--CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEE
Q 016547 170 DTVEDVTF--CPSSA-QEFCSVGDDSCLILWDARVG---T--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 241 (387)
Q Consensus 170 ~~v~~~~~--~~~~~-~~l~~~~~dg~i~iwd~~~~---~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~ 241 (387)
..+..+++ +|..+ .++++...+|.+..|++... . ...++.+. -.+.+..+..++ ....|..+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcC-CCCeEEEecccceEEE
Confidence 45666777 66442 46788888999999998542 1 12344444 346788899998 7888899988866655
Q ss_pred EEeccCCCCCCCCceEEec--cccceEEEEEE--cCCCC-eeEEEecCCCeEEEEeCCC
Q 016547 242 FDRRNLTSNGVGSPINKFE--GHSAAVLCVQW--SPDKS-SVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~~~~~-~ll~s~~~d~~i~vwd~~~ 295 (387)
++.+.... ...+.+..+. .....+..|++ .++++ +||+++-.+....+||...
T Consensus 206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 55442110 0023443332 12246778877 55666 7888887789999999973
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.03 E-value=0.00097 Score=54.53 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=104.6
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cC--CCeeEEEe---cCCCCCeEEEeeC----
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HD--ADLHCVDW---NPLDDNLILTGSA---- 235 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~--~~i~~~~~---~~~~~~~l~~~~~---- 235 (387)
..--.+++|.+....++++.-..+.|..||...+..... .+.. .. ..+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence 334457899886646666666899999999875542112 2221 11 13578999 68 7777776442
Q ss_pred ---------CCeEEEEEec---cCCCCCCCCceEEec--cc-----------cceEEEEEEcCCCCeeEEEecCC-CeEE
Q 016547 236 ---------DNSVRMFDRR---NLTSNGVGSPINKFE--GH-----------SAAVLCVQWSPDKSSVFGSSAED-GLLN 289 (387)
Q Consensus 236 ---------dg~i~~~d~~---~~~~~~~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~ll~s~~~d-~~i~ 289 (387)
++.|..||+. + ++.+.... .. ......++..++|+ .+++++.. +.|.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~ 162 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIA 162 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEE
T ss_pred cccccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEE
Confidence 6789999998 6 55554432 11 13588999999998 46677777 7766
Q ss_pred EEeCCCCCceeccCCCCCCCCceeeeee--ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547 290 IWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361 (387)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~ 361 (387)
..+.... ... ...... .......+.++++|++..|++.-+ +|.|..+|+..+
T Consensus 163 rV~pdG~--~~~----------~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~--------~g~L~~fD~~~p 216 (334)
T 2p9w_A 163 RVSADGK--TVS----------TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG--------PRALTAFDVSKP 216 (334)
T ss_dssp EECTTSC--CEE----------EEEECCCCSSSCCSCSEEEEETTTTEEEEESS--------SSSEEEEECSSS
T ss_pred EEeCCCC--EEe----------eeeecCCCcccccCcceEEEeCCCCEEEEEcC--------CCeEEEEcCCCC
Confidence 6665542 110 000000 112235789999999998887433 599999998843
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.03 E-value=0.0016 Score=58.89 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=37.4
Q ss_pred CeEEEEEccCCCCceeEEeeccCC-------CeeEEEec-CCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~-------~i~~~~~~-~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 260 (387)
+.|.-+|.++++..-......|.. ...-+... . ++ ..++.++.+|.++++|.++ ++.+..+.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~~ 363 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN------GKLQNAFP 363 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCC------CCEecccc
Confidence 689999999988321111222321 11112221 3 45 4788899999999999988 66655443
No 291
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0071 Score=57.09 Aligned_cols=247 Identities=8% Similarity=0.003 Sum_probs=137.6
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 110 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~ 110 (387)
...|.++...+ ++. |..|+.++-|..++.....-..-...... .....-....|.++...++|.+. .|+.++-
T Consensus 312 ~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~v~~i~~d~~g~lW-igt~~~G 384 (781)
T 3v9f_A 312 NASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ----MNESSLSNKVVSSVCDDGQGKLW-IGTDGGG 384 (781)
T ss_dssp SSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----C----CCSSCCSSSCEEEEEECTTSCEE-EEEBSSC
T ss_pred CCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccc----cccCCCCCcceEEEEEcCCCCEE-EEeCCCc
Confidence 45788888776 554 44556566688888765521000000000 00011122368899998887654 4454556
Q ss_pred EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547 111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 190 (387)
Q Consensus 111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 190 (387)
|..++..+........ ........|.++...+++ . |..|+.
T Consensus 385 l~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~v~~i~~d~~g-~-lWigt~ 425 (781)
T 3v9f_A 385 INVFENGKRVAIYNKE-------------------------------------NRELLSNSVLCSLKDSEG-N-LWFGTY 425 (781)
T ss_dssp EEEEETTEEEEECC------------------------------------------CCCSBEEEEEECTTS-C-EEEEET
T ss_pred EEEEECCCCeEEEccC-------------------------------------CCCCCCcceEEEEECCCC-C-EEEEec
Confidence 8888876432110000 001124568888887776 4 445666
Q ss_pred CCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-----
Q 016547 191 DSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----- 262 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----- 262 (387)
++-+..+|..+++ ...+. .....|.++...+ ++. |..|+. +-|..||..+ .+........
T Consensus 426 ~~Gl~~~~~~~~~---~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~ 493 (781)
T 3v9f_A 426 LGNISYYNTRLKK---FQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLL 493 (781)
T ss_dssp TEEEEEECSSSCE---EEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSS------SSCCEEECTTTSSCS
T ss_pred cCCEEEEcCCCCc---EEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCC------CeEEecccCcccccc
Confidence 6779999887655 22221 2346788888887 555 445555 4588888775 3322221111
Q ss_pred cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEec
Q 016547 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVS 341 (387)
Q Consensus 263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s 341 (387)
...|.++...++|.. . .|+.++.+..||........ ..... -....|.++...++|...+.+
T Consensus 494 ~~~i~~i~~d~~g~l-W-igt~~~Gl~~~~~~~~~~~~-------------~~~~~~l~~~~i~~i~~d~~g~lWi~T-- 556 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRF-W-IGTFGGGVGIYTPDMQLVRK-------------FNQYEGFCSNTINQIYRSSKGQMWLAT-- 556 (781)
T ss_dssp CSCEEEEEECTTCCE-E-EEESSSCEEEECTTCCEEEE-------------ECTTTTCSCSCEEEEEECTTSCEEEEE--
T ss_pred cceeEEEEEcCCCCE-E-EEEcCCCEEEEeCCCCeEEE-------------ccCCCCCCCCeeEEEEECCCCCEEEEE--
Confidence 357899999999983 4 34444447778876531110 00000 123468889888888765532
Q ss_pred CCCCCCCCCceEEEEecC
Q 016547 342 DDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 342 ~d~~tg~~dg~i~iw~~~ 359 (387)
.+|.|..||..
T Consensus 557 -------~~Glv~~~d~~ 567 (781)
T 3v9f_A 557 -------GEGLVCFPSAR 567 (781)
T ss_dssp -------TTEEEEESCTT
T ss_pred -------CCCceEEECCC
Confidence 13554777765
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0043 Score=51.24 Aligned_cols=170 Identities=7% Similarity=0.111 Sum_probs=99.6
Q ss_pred CCeEEEEEccC----CCe--e-EEEecC--CCeEEEEEccCCCCceeEEeec------cC-CCeeEEEe--cCCCCC-eE
Q 016547 170 DTVEDVTFCPS----SAQ--E-FCSVGD--DSCLILWDARVGTSPVIKVEKA------HD-ADLHCVDW--NPLDDN-LI 230 (387)
Q Consensus 170 ~~v~~~~~~~~----~~~--~-l~~~~~--dg~i~iwd~~~~~~~~~~~~~~------~~-~~i~~~~~--~~~~~~-~l 230 (387)
+.++.+..-|. +.. + +++.-. +++|.+|++.....+ +..... .. ..+..+++ +|..+. ++
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ya 146 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYA 146 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEE
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEE
Confidence 45666665552 111 2 333334 689999977422211 333311 12 56777888 773343 68
Q ss_pred EEeeCCCeEEEEEeccCCCC-CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC
Q 016547 231 LTGSADNSVRMFDRRNLTSN-GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309 (387)
Q Consensus 231 ~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 309 (387)
++...+|.+..|++...... ...+.++++.. .+.+..+...+....|+ .+-++..|..++.+.....
T Consensus 147 fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~---------- 214 (355)
T 3amr_A 147 MVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGS---------- 214 (355)
T ss_dssp EEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCS----------
T ss_pred EEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCC----------
Confidence 88888999999999542110 11466777763 45788888888877666 6667766666664432100
Q ss_pred Cceeeeeec-cC-CCCeeEEEE--ccCCC-eEEEEecCCCCCCCCCceEEEEecC
Q 016547 310 PAGLFFQHA-GH-RDKVVDFHW--NASDP-WTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 310 ~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
....+.... ++ ...+..|++ .++++ ||++++-.+ +++.+||..
T Consensus 215 ~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-------~s~~Vydr~ 262 (355)
T 3amr_A 215 NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-------SSYAIYDRQ 262 (355)
T ss_dssp CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-------TEEEEEESS
T ss_pred CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC-------CEEEEEECC
Confidence 012233221 22 236888888 45555 788776444 799999996
No 293
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.95 E-value=0.0025 Score=57.57 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=34.9
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+|.|..||..+ ++.+-++... ..+....+...+..++ .++.|+.|+.||.++++
T Consensus 443 ~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 443 MGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKDGK 496 (571)
T ss_dssp CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTTCC
T ss_pred CCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCCCC
Confidence 47888888887 7776666422 2222222223345454 68889999999998863
No 294
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.88 E-value=0.0079 Score=54.40 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
+|.|..||+.+ ++.+-+.... .++..-.....+..+ ..++.|+.++.||.++++
T Consensus 465 ~G~l~A~D~~t------G~~~W~~~~~-~~~~~g~~~tagglv-f~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVS------GKVVWEHKEH-LPLWAGVLATAGNLV-FTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTT------CCEEEEEEES-SCCCSCCEEETTTEE-EEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCC------CCEEEEecCC-CCCcccceEeCCCEE-EEECCCCcEEEEECCCCC
Confidence 57888889888 7766655422 122111111234434 468899999999999863
No 295
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.019 Score=54.23 Aligned_cols=254 Identities=10% Similarity=0.052 Sum_probs=136.7
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE------eccCCCceEEEEECCCCCEEEE
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL------TGHQDNAEFALAMCPTEPYVLS 104 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~v~~~~~~~~~~~l~s 104 (387)
...|.++...+ ++. |..|+..+-|.++|..+.....-.. .....+ .+-....|.++...++|.. -.
T Consensus 257 ~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wi 328 (781)
T 3v9f_A 257 SSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQ-----IRFEFIREGDNNYSLSNASARYIFQDSFNNI-WI 328 (781)
T ss_dssp CCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC--------------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EE
T ss_pred CceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeec-----cccccccCCCCCCCCCCCeEEEEEEeCCCCE-EE
Confidence 35688888766 555 4445554458888887652110000 000000 0112236889999888864 44
Q ss_pred ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 184 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (387)
|+.++-|..++............ .... .........|.++...+++ .
T Consensus 329 gt~~~Gl~~~~~~~~~~~~~~~~-----------------------------~~~~--~~~~l~~~~v~~i~~d~~g-~- 375 (781)
T 3v9f_A 329 GTWGGGINFISNAPPTFHTWSYS-----------------------------PTQM--NESSLSNKVVSSVCDDGQG-K- 375 (781)
T ss_dssp EEBSSCEEEECSSCCSCEEEC---------------------------------CC--CSSCCSSSCEEEEEECTTS-C-
T ss_pred EecCCeEEEeCCCCCcceeeccC-----------------------------cccc--ccCCCCCcceEEEEEcCCC-C-
Confidence 55566778887764322110000 0000 0000123568899888777 4
Q ss_pred EEEecCCCeEEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec---
Q 016547 185 FCSVGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--- 260 (387)
Q Consensus 185 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--- 260 (387)
+-.|+.++-|..||..+....... ........|.++...+ ++. |..|+.++-+..+|..+ ++ +..+.
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~------~~-~~~~~~~~ 446 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRL------KK-FQIIELEK 446 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSS------CE-EEECCSTT
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCC------Cc-EEEeccCC
Confidence 555665667888987654311000 0012345788888876 555 45577766788888765 32 22222
Q ss_pred cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec---cCCCCeeEEEEccCCCeEE
Q 016547 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---GHRDKVVDFHWNASDPWTV 337 (387)
Q Consensus 261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 337 (387)
.....|.++...+++. |. .|+. +.|..||.....-.. ..... .....|.++...++|...+
T Consensus 447 ~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~~i~~d~~g~lWi 510 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKVIH-------------HYDTSNSQLLENFVRSIAQDSEGRFWI 510 (781)
T ss_dssp TCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSCCE-------------EECTTTSSCSCSCEEEEEECTTCCEEE
T ss_pred CCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeEEe-------------cccCcccccccceeEEEEEcCCCCEEE
Confidence 1346789999888887 44 3444 568889877532110 00000 1135788999988887665
Q ss_pred EEecCCCCCCCCCceEEEEecC
Q 016547 338 VSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 338 ~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+. ++-|..|+..
T Consensus 511 gt~---------~~Gl~~~~~~ 523 (781)
T 3v9f_A 511 GTF---------GGGVGIYTPD 523 (781)
T ss_dssp EES---------SSCEEEECTT
T ss_pred EEc---------CCCEEEEeCC
Confidence 321 1236667765
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=0.0013 Score=57.46 Aligned_cols=171 Identities=9% Similarity=0.092 Sum_probs=98.8
Q ss_pred CeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCCceeEEeec---cCCCeeEEEe-------cCCCCCeEEEeeCCC--
Q 016547 171 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHCVDW-------NPLDDNLILTGSADN-- 237 (387)
Q Consensus 171 ~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~~l~~~~~dg-- 237 (387)
....|+|.|. .++++++....+.|++.|+..+. ....... .......|+| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence 4678999983 43566665555778899988766 2222221 1235789999 99 888666666554
Q ss_pred -----eEEEEEeccCCCCCCCC--c-eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC-------CCCc--ee
Q 016547 238 -----SVRMFDRRNLTSNGVGS--P-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-------KVGK--KV 300 (387)
Q Consensus 238 -----~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~-------~~~~--~~ 300 (387)
.|.+++...... .. . ...+... .....++++|++.+|+++-..++.|..+|+. .... +.
T Consensus 217 ~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 217 GDESPSVYIIKRNADGT---FDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp GGGEEEEEEEECCTTSC---CSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred cccCceEEEEecCCCCc---eeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 255665332000 11 0 0122211 1235788899777788888889999999997 3211 00
Q ss_pred ccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.... . .....+... +.......++|+|++++|+++-+.. +.|+.++.+
T Consensus 293 ~~~~--~-g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~d 340 (496)
T 3kya_A 293 VKNN--P-NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYD 340 (496)
T ss_dssp GGGC--T-TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred cccc--c-cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecC
Confidence 0000 0 000112222 2234568999999999766654433 789887765
No 297
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.83 E-value=0.0032 Score=56.95 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=32.8
Q ss_pred CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
+|.|..||+.+ ++.+-+... ..+...-.+...+..+| .++.|+.++.||.++++.
T Consensus 452 ~G~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 452 LGQIKAYNAIT------GDYKWEKME-RFAVWGGTMATAGDLVF-YGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CEEEEEECTTT------CCEEEEEEE-SSCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCE
T ss_pred cCeEEEEECCC------CCEEeEecC-CCCccCcceEecCCEEE-EECCCCeEEEEECCCCCE
Confidence 46777788777 666555531 11111111122345444 688899999999998643
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.80 E-value=0.02 Score=52.29 Aligned_cols=202 Identities=4% Similarity=-0.084 Sum_probs=126.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCC
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKD 108 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d 108 (387)
.-..+..|+|.+.++.++++-..++.|..++++.. .....+..... ....+++.+.+..|+ +-...
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~------------~~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~~ 101 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS------------ALEHVVEFGLD-YPEGMAVDWLGKNLYWADTGT 101 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEECSSCS-CCCEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC------------CcEEEEeCCCC-CcceEEEEeCCCEEEEEECCC
Confidence 34568899999977777888778899999988765 22222222111 235788877655554 44456
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
+.|.+.+++..... ......-.....|++.|..+.++.+-
T Consensus 102 ~~I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~G~lY~tD 141 (628)
T 4a0p_A 102 NRIEVSKLDGQHRQ----------------------------------------VLVWKDLDSPRALALDPAEGFMYWTE 141 (628)
T ss_dssp TEEEEEETTSTTCE----------------------------------------EEECSSCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCCCcEE----------------------------------------EEEeCCCCCcccEEEccCCCeEEEeC
Confidence 78888887642110 11112234568999998654666654
Q ss_pred -cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547 189 -GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266 (387)
Q Consensus 189 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i 266 (387)
+..+.|...++..... ..+...-.....|++++ ++..|..+ ...+.|..+|+.. ... ..+...-...
T Consensus 142 ~g~~~~I~r~~~dG~~~---~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG------~~~-~v~~~~l~~P 210 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSER---TTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLG------LNR-EVIADDLPHP 210 (628)
T ss_dssp CSSSCEEEEEETTSCSC---EEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTS------CSC-EEEEECCSCE
T ss_pred CCCCCEEEEEeCCCCce---EEEECCCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCC------Cce-EEeeccCCCc
Confidence 3367888888876552 22223455788999999 55555544 4567899998874 222 2232222344
Q ss_pred EEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
..+++.. .+++++-...+.|...|..++.
T Consensus 211 ~glav~~--~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 211 FGLTQYQ--DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEEC--CEEEEecCCCCEEEEEECCCCC
Confidence 5777765 3577787778999999876543
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.77 E-value=0.037 Score=54.28 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=48.8
Q ss_pred ecCCCcEEEEEecCC-----CCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC--CCC
Q 016547 28 IIHPGEVNRIRELPQ-----NTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTE 99 (387)
Q Consensus 28 ~~h~~~v~~i~~~~~-----~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~--~~~ 99 (387)
..-.++|.|+++.|. ..+++|.|.. |++|+|+++.+.+... ...+... ....++.+. ...
T Consensus 550 ~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~----------~~~L~~~--~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 550 TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH----------KEMLGGE--IIPRSILMTTFESS 617 (1158)
T ss_dssp EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE----------EEECCSS--CCEEEEEEEEETTE
T ss_pred cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE----------EEECCCC--CCCcEEEEEEeCCC
Confidence 344678999998763 2479999986 9999999998652111 1112110 112233222 234
Q ss_pred CEEEEecCCCeEEEEEcC
Q 016547 100 PYVLSGGKDKSVVLWSIQ 117 (387)
Q Consensus 100 ~~l~s~~~d~~i~vwd~~ 117 (387)
.+|..|-.||.+.-+.++
T Consensus 618 ~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCeEEEEEEc
Confidence 578888899998777664
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.45 E-value=0.037 Score=45.99 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=81.9
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
...+..+.+.+++ .+++.+...+..+-.|-........ .......+..+.+.+ ++..+ .++.+|.+++.+.....
T Consensus 162 ~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 162 IGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEE
T ss_pred CcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCC
Confidence 4567889999987 6666665444344444211221111 223456788899988 66655 55568887776321100
Q ss_pred CCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547 249 SNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 327 (387)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (387)
. ...+..- ......+.++++.+++. +++++. +|.| .+..+.+.. ...+.........+.++
T Consensus 237 t---W~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~t------------W~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 237 N---WGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQT------------WQQDVDVKKVPSNFYKI 298 (327)
T ss_dssp E---ECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSS------------CEECGGGTTSSSCCCEE
T ss_pred e---eEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcc------------cEEcCccCCCCCCeEEE
Confidence 0 2221110 01223588899998776 555554 6666 333333211 01111111223567888
Q ss_pred EEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547 328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358 (387)
Q Consensus 328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~ 358 (387)
.|.+++. ++ .+|.+|.|.-++-
T Consensus 299 ~~~~~~~-~~--------~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 299 LFFSPDQ-GF--------ILGQKGILLRYVT 320 (327)
T ss_dssp EEEETTE-EE--------EECSTTEEEEECC
T ss_pred EEECCCc-eE--------EEcCCceEEEEcC
Confidence 8875444 44 3345587766653
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.42 E-value=0.036 Score=45.32 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=54.5
Q ss_pred eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCCCC
Q 016547 183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 252 (387)
Q Consensus 183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~ 252 (387)
.+++.|+.+ ..+.+||+.+.+...+..... ...-.++... ++.+++.|+.+ ..+..||..+..
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~---- 186 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH---- 186 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence 677777643 368899988776433332221 1111222222 57788887765 457888877522
Q ss_pred CCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV 296 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 296 (387)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+.
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCC
Confidence 2222222111111122222 34 366677654 46889998763
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.40 E-value=0.038 Score=45.02 Aligned_cols=231 Identities=13% Similarity=0.213 Sum_probs=136.4
Q ss_pred CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
.+.+|.|-|+..+. ....-.-..+ +.-.+|..+.+|.-. ..++.++|+++.....
T Consensus 47 ~~~~VvIiDl~n~~------------~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klk-------- 101 (365)
T 2xzh_A 47 EQAQVVIIDMNDPS------------NPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK-------- 101 (365)
T ss_dssp TEEEEEEEETTSTT------------SCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEE--------
T ss_pred CCCEEEEEECCCCC------------Cccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhc--------
Confidence 34479999998873 2222222222 344578877777655 6799999998753321
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 211 (387)
.+. ..+.|.-=.|-.+. .|+..+ +..|+-|++..... ..+.+.
T Consensus 102 --------------------------------s~~-~~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~~s~-P~kvFd 144 (365)
T 2xzh_A 102 --------------------------------AHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFD 144 (365)
T ss_dssp --------------------------------EEE-CSSCEEEEEECSSS--EEEEEE-SSEEEEEESSTTCC-CEEEEE
T ss_pred --------------------------------cee-cCCccEEEEecCCC--eEEEEc-CCcEEEEcccCCCC-Cceeee
Confidence 111 13567666776654 344333 46899999976443 344444
Q ss_pred cc----CCCeeEEEecCCCCCeEEEeeC-------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC--CCee
Q 016547 212 AH----DADLHCVDWNPLDDNLILTGSA-------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD--KSSV 278 (387)
Q Consensus 212 ~~----~~~i~~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l 278 (387)
.| ...|..-..++ +.++++..+- .|.+.+|..+ .+.-+.+++|...-..+.+..+ ...|
T Consensus 145 R~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTL 216 (365)
T ss_dssp CCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred cchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeec-------ccccceeeeeeeeeEEEecCCCCCCceE
Confidence 43 34566667788 7777766543 3678899887 4667788888766544444322 2234
Q ss_pred EEEecC---CCeEEEEeCCCCCceeccCCCCCCCCce---eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547 279 FGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAG---LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 352 (387)
Q Consensus 279 l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~ 352 (387)
|+-+.. .++++|-++....... ...+.+ +.+......+-..+|..++....+.+.... |.
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~------~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~--------G~ 282 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGN------QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY--------GY 282 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTC------CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETT--------SE
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCC------CCcccccceeeCCccccCCceEEEEecccCCEEEEEeCC--------cE
Confidence 543332 2689999986531110 011111 112222335566788888887776654433 89
Q ss_pred EEEEecCCCcccccchhhhh
Q 016547 353 LQIWRMSDLIYRPQDEVLAE 372 (387)
Q Consensus 353 i~iw~~~~~~~~~~~~~~~~ 372 (387)
|++||+. ++.++-.
T Consensus 283 ihlyDle------Tgt~i~~ 296 (365)
T 2xzh_A 283 IHLYDLE------TGTCIYM 296 (365)
T ss_dssp EEEEETT------TCCEEEE
T ss_pred EEEEEcc------cCcEEEE
Confidence 9999999 6666543
No 303
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.38 E-value=0.027 Score=46.37 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=53.2
Q ss_pred eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCCCC
Q 016547 183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 252 (387)
Q Consensus 183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~ 252 (387)
.+++.|+.+ ..+.+||+.+.+............. .+++.. ++.+++.|+.+ ..+..||..+..
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~---- 195 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE---- 195 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence 677777643 3588899887663222222111111 122222 56777777765 457888877532
Q ss_pred CCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV 296 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 296 (387)
...+..+......-..+.+ +++ |++.|+.+ ..+.+||+.+.
T Consensus 196 W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCC
Confidence 2222211111111122222 344 66677654 45889998763
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.38 E-value=0.041 Score=45.05 Aligned_cols=104 Identities=10% Similarity=0.075 Sum_probs=52.6
Q ss_pred eeEEEecCCC-----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-------CeEEEEEeccCCCC
Q 016547 183 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDRRNLTSN 250 (387)
Q Consensus 183 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~ 250 (387)
.+++.|+.++ .+.+||+.+.+...+..... ...-.+++.. ++.+++.|+.+ ..+..||..+..
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-- 184 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE-- 184 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-cccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence 6777776543 57788888766432222211 1111222222 56777777653 347888887522
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV 296 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 296 (387)
...+..+.........+.+ ++. |++.|+.+ ..+.+||+.+.
T Consensus 185 --W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 185 --WTYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTT
T ss_pred --EEECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCC
Confidence 2222222111111122222 344 66677654 36888998763
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.21 E-value=0.065 Score=43.91 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=52.8
Q ss_pred eeEEEecCC------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---------CCeEEEEEeccC
Q 016547 183 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNL 247 (387)
Q Consensus 183 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~ 247 (387)
.+++.|+.+ ..+.+||..+.+......... ...-.+++.. ++.+++.|+. -..+.+||..+.
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 677777755 458899988776432222211 1111122222 5677777764 344778888763
Q ss_pred CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547 248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV 296 (387)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 296 (387)
. ...+..+......-..+.+ +++ |++.|+.+ ..+.+||+.+.
T Consensus 180 ~----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 180 T----WTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp E----EEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTTT
T ss_pred e----EEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCCC
Confidence 2 2222222111111112222 344 66677643 35888888763
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.20 E-value=0.072 Score=44.21 Aligned_cols=107 Identities=9% Similarity=0.104 Sum_probs=59.8
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe--ccCC
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR--RNLT 248 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~--~~~~ 248 (387)
.+..+.+.+++ ..++.+. +|.|.. ..+.++ .-..........+..+.+.| ++.+++++...+..+-.|- .+
T Consensus 123 ~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~-tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~t-- 195 (327)
T 2xbg_A 123 SPRLIKALGNG-SAEMITN-VGAIYR-TKDSGK-NWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTA-- 195 (327)
T ss_dssp CEEEEEEEETT-EEEEEET-TCCEEE-ESSTTS-SEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSS--
T ss_pred CeEEEEEECCC-CEEEEeC-CccEEE-EcCCCC-CCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCc--
Confidence 46677777666 6666554 554422 112222 11222234456788999998 7777766644333333332 12
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
.+.+. ......+..+++.+++. ++ ..+.+|.+++.+
T Consensus 196 ----W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 196 ----WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp ----CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred ----eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 33332 23456788999999987 44 344578877764
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.079 Score=44.30 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=90.9
Q ss_pred CeEEEEEccCCCeeEEEec------------CCCeEEEEEccCCCCce-eEEeec-----cCCCeeEEEecCC-CC--Ce
Q 016547 171 TVEDVTFCPSSAQEFCSVG------------DDSCLILWDARVGTSPV-IKVEKA-----HDADLHCVDWNPL-DD--NL 229 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~-~~~~~~-----~~~~i~~~~~~~~-~~--~~ 229 (387)
..-++...|+| ..+++++ .+|.|.++|..+..... ...+.+ ..-....+.+.+. ++ .+
T Consensus 51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566778877 5555542 68999999997532111 112222 2235677777541 23 24
Q ss_pred EEEeeC--CCeEEEEEeccCCCCCCCCceEEeccc-cceEEEEEEcCCCCeeEEEecC-----------------CCeEE
Q 016547 230 ILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAE-----------------DGLLN 289 (387)
Q Consensus 230 l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ll~s~~~-----------------d~~i~ 289 (387)
+++-.. +..|.+|++..... ....+..+.+. -...+.+++.++|++ +++... .|.|.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEE
Confidence 444333 56888988875210 01223334322 235789999999984 445431 13343
Q ss_pred EEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
-+|... +..+...-...+.++|+||++.+.++-+.. +.|..|++.
T Consensus 207 r~d~~~------------------~~~~~~~l~~pNGia~spDg~~lYvadt~~-------~~I~~~~~~ 251 (355)
T 3sre_A 207 YYSPND------------------VRVVAEGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKH 251 (355)
T ss_dssp EECTTC------------------CEEEEEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEEC
T ss_pred EEECCe------------------EEEeecCCcccCcceECCCCCEEEEEeCCC-------CeEEEEEEC
Confidence 333311 111112223569999999999998866544 899999987
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.08 Score=44.26 Aligned_cols=145 Identities=7% Similarity=-0.027 Sum_probs=84.1
Q ss_pred CeEEEEEcc--CCC-eeEEEecC--CCeEEEEEccCCCC--ceeEEeec-cCCCeeEEEecCCCCCeEEEeeC-------
Q 016547 171 TVEDVTFCP--SSA-QEFCSVGD--DSCLILWDARVGTS--PVIKVEKA-HDADLHCVDWNPLDDNLILTGSA------- 235 (387)
Q Consensus 171 ~v~~~~~~~--~~~-~~l~~~~~--dg~i~iwd~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~------- 235 (387)
....+.+.+ ++. +++++-.. +..|.+|++..... .....+.+ .-...+.+.+.+ ++.+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 456677655 342 24444333 56788888776432 12222222 124578899999 8887776541
Q ss_pred ----------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547 236 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 305 (387)
Q Consensus 236 ----------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~ 305 (387)
.|.|..+|. ++ +..+...-...+.++|+||++.++++-+..+.|..|++...+...
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--------~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~----- 257 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT----- 257 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--------TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-----
T ss_pred ccchhhccCCccEEEEEEC--------Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe-----
Confidence 234444432 22 222221223468999999999888888888999999997532211
Q ss_pred CCCCCceeeeeeccCCCCeeEEEEcc-CCCeEEE
Q 016547 306 TTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVV 338 (387)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 338 (387)
....+ ...+..-.++..+ +|...++
T Consensus 258 -------~~~~~-~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 258 -------PLRVL-SFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp -------EEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred -------cCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence 11111 1235667888888 4775553
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.15 E-value=0.087 Score=44.24 Aligned_cols=247 Identities=10% Similarity=0.054 Sum_probs=121.6
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCC---CCEEEE
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVLS 104 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~---~~~l~s 104 (387)
.-.....|+|.| +++++++ ..+|.|++++ ++.. ..+..+. .........|+++|+ +..|..
T Consensus 29 ~l~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~----------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 29 GLEVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRL----------STYAELSVYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp CCSCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEE----------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCc----------cEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence 345578999999 7776666 4569999988 3310 1111111 011123579999998 555554
Q ss_pred ecC-C-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec---CCCCCeEEE
Q 016547 105 GGK-D-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN---GHEDTVEDV 175 (387)
Q Consensus 105 ~~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~ 175 (387)
+.. . +.|..++....... ... ..+..+. ........+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~-~~~---------------------------------~l~~~~p~~~~~~h~~~~l 140 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGV-LDR---------------------------------VVLDGIPARPHGLHSGGRI 140 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEE-EEE---------------------------------EEEEEECCCTTCCCCCCCE
T ss_pred EEecCCCCCccEEEEEEeCCCCcC-ceE---------------------------------EEEEeCCCCCCCCcCCceE
Confidence 432 2 56777776532100 000 0000011 111123579
Q ss_pred EEccCCCeeEEEecC-------------CCeEEEEEccCC------------CCceeEEeeccCCCeeEEEecCCCCCeE
Q 016547 176 TFCPSSAQEFCSVGD-------------DSCLILWDARVG------------TSPVIKVEKAHDADLHCVDWNPLDDNLI 230 (387)
Q Consensus 176 ~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (387)
+|.|+| .++++.+. .|.|.-++.... ....+ ...++ .....++|+|.++.++
T Consensus 141 ~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G~-rnp~g~a~d~~~g~l~ 217 (352)
T 2ism_A 141 AFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEV-YSLGH-RNPQGLAWHPKTGELF 217 (352)
T ss_dssp EECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTE-EEECC-SEECCCEECTTTCCEE
T ss_pred EECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccE-EEEcC-CCcccEEEECCCCCEE
Confidence 999998 66665432 256666665431 00111 11222 3467889998445544
Q ss_pred EEeeCCCeE------EEEEeccCCC------------CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547 231 LTGSADNSV------RMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292 (387)
Q Consensus 231 ~~~~~dg~i------~~~d~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd 292 (387)
++-...+.+ .+.-+....+ .....++..+..| .....++| .+|. ++++.-..+.|...+
T Consensus 218 v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~-l~v~~~~~~~v~~v~ 294 (352)
T 2ism_A 218 SSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGD-LYVAGLRGQALLRLV 294 (352)
T ss_dssp EEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTE-EEEEETTTTEEEEEE
T ss_pred EEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCE-EEEEECCCCEEEEEE
Confidence 443322321 1222222110 0001234444323 34567888 4555 566666778888888
Q ss_pred CCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547 293 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339 (387)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s 339 (387)
+......... .....+......+..+++.|+|..++++
T Consensus 295 ~~~~~~~~~~---------~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 295 LEGERGRWRV---------LRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEETTEEEE---------EEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred ECCCCcceee---------cchheecccCCCeeEEEECCCCcEEEEE
Confidence 7653221000 0011111223578999999999755543
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.13 E-value=0.092 Score=44.09 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=59.4
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547 91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 170 (387)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (387)
..++|.|+|+++++ ..+|.|.+++ ++........ ........
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~-----------------------------------~v~~~g~~ 75 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAEL-----------------------------------SVYHRGES 75 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEEC-----------------------------------CCCCSTTC
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecc-----------------------------------eEeecCCC
Confidence 69999999985555 5569999888 2211000000 00111234
Q ss_pred CeEEEEEccC---CCeeEEEecCC-----CeEEEEEccCCCC----ceeEEee---ccCCCeeEEEecCCCCCeEEEee
Q 016547 171 TVEDVTFCPS---SAQEFCSVGDD-----SCLILWDARVGTS----PVIKVEK---AHDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 171 ~v~~~~~~~~---~~~~l~~~~~d-----g~i~iwd~~~~~~----~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
....|+++|+ ++.++++-... +.|..++...... .....+. ........++|.| ++.++++-+
T Consensus 76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 6789999998 43555554432 6788888764321 1111122 1112346899999 887666643
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.04 E-value=0.12 Score=43.91 Aligned_cols=230 Identities=13% Similarity=0.215 Sum_probs=137.8
Q ss_pred CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547 52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131 (387)
Q Consensus 52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 131 (387)
.+.+|.|-|+..+. ....-.-..+ +.-.+|..+.++.-. ..++.++|+++.....
T Consensus 46 ~~~~vvIiDl~~~~------------~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klk-------- 100 (494)
T 1bpo_A 46 EQAQVVIIDMNDPS------------NPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK-------- 100 (494)
T ss_dssp TCCEEEEEETTSTT------------SCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEE--------
T ss_pred CCCeEEEEECCCCC------------cceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhc--------
Confidence 34489999998873 2211122222 455677777776554 6899999998653221
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211 (387)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 211 (387)
.+. ..+.|.-=.|-.+. .|+..+ +..|+-|++..... ..+.+.
T Consensus 101 --------------------------------s~~-~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~-P~kvFd 143 (494)
T 1bpo_A 101 --------------------------------AHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFD 143 (494)
T ss_dssp --------------------------------EEE-CSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCC-CEEEEE
T ss_pred --------------------------------cee-cCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCC-chhhee
Confidence 111 13456666776654 344443 46899999976443 344444
Q ss_pred cc----CCCeeEEEecCCCCCeEEEeeC-------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC--Cee
Q 016547 212 AH----DADLHCVDWNPLDDNLILTGSA-------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK--SSV 278 (387)
Q Consensus 212 ~~----~~~i~~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l 278 (387)
.| ...|..-..++ +.++++..+- .|.+.+|..+ .+.-+.+++|...-..+.+..+. ..+
T Consensus 144 R~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~l 215 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTL 215 (494)
T ss_dssp CCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEEST-------TCCEEEECCSEEEEEEEECTTCSSEEEE
T ss_pred cchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecc-------ccccchheeeeeeeEEEecCCCCCCceE
Confidence 43 34566677788 7777775542 4778899888 46777888887766555553221 235
Q ss_pred EEEecC---CCeEEEEeCCCCCceeccCCCCCCCCce---eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547 279 FGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAG---LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT 352 (387)
Q Consensus 279 l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~ 352 (387)
|+-+.. .++++|-++....... ...+.+ +.+......+-..++..++....+.+.... |.
T Consensus 216 f~fa~r~~~g~kLhi~Ei~~~~~~~------~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~--------G~ 281 (494)
T 1bpo_A 216 FCFAVRGQAGGKLHIIEVGTPPTGN------QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY--------GY 281 (494)
T ss_dssp EEEEECSTTCCEEEEEECSCCCTTC------CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT--------SE
T ss_pred EEEEEecCCCcEEEEEEcCCCccCC------CCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC--------ce
Confidence 554443 3789999996531110 001111 111112334566788888888776654433 89
Q ss_pred EEEEecCCCcccccchhhh
Q 016547 353 LQIWRMSDLIYRPQDEVLA 371 (387)
Q Consensus 353 i~iw~~~~~~~~~~~~~~~ 371 (387)
|++||+. ++.++-
T Consensus 282 i~lyDle------Tgt~i~ 294 (494)
T 1bpo_A 282 IHLYDLE------TGTCIY 294 (494)
T ss_dssp EEEEETT------TCCEEE
T ss_pred EEEEecc------cceeee
Confidence 9999999 666554
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.02 E-value=0.09 Score=42.91 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=54.3
Q ss_pred CCCeeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCC
Q 016547 180 SSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTS 249 (387)
Q Consensus 180 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~ 249 (387)
++ .+++.|+.+ ..+.+||+.+.+...+..... ...-.++... ++.+++.|+.+ ..+.+||+.+..
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~- 233 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS- 233 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-
Confidence 44 677777654 458899988776432222211 1111122222 56788888764 468889987632
Q ss_pred CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 295 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~ 295 (387)
...+..+.........+.+ +++ |++.|+.+ ..+.+||+.+
T Consensus 234 ---W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 234 ---WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred ---EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence 2222222111111122222 444 66677654 3577787765
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.93 E-value=0.15 Score=43.28 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=78.3
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee---
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--- 165 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 165 (387)
.|..+..+|+|++||..+ +..|.|-.+..+......... .. ..+ ...+
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~-----~~----------------------~~q-~~ty~l~ 117 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI-----QD----------------------AFQ-IFHYSID 117 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH-----HH----------------------TTE-EEEEEGG
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc-----cc----------------------ccc-eeEEEcC
Confidence 367899999999999887 568999988743211100000 00 000 0011
Q ss_pred ---cCCCCCeEEEEEccCCC--eeEEEecCCCeEEEEEccCCCCceeEEe---------eccCCCeeEEEecCCCCCeEE
Q 016547 166 ---NGHEDTVEDVTFCPSSA--QEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLIL 231 (387)
Q Consensus 166 ---~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~l~ 231 (387)
.....+|..+.|+|-+. ..|++-..|+.|++||+........ .+ ......|.+++|.+ ++-.|.
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLY 195 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLY 195 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEE
Confidence 11357899999999753 3788888999999999986332112 11 12235788999998 787777
Q ss_pred Eee--CCCeEEEE
Q 016547 232 TGS--ADNSVRMF 242 (387)
Q Consensus 232 ~~~--~dg~i~~~ 242 (387)
..+ ..|.|+-.
T Consensus 196 vl~~t~~GDIYAl 208 (452)
T 3pbp_A 196 CLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEecCCCCCEEEE
Confidence 755 77887654
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.83 E-value=0.17 Score=42.42 Aligned_cols=249 Identities=9% Similarity=0.051 Sum_probs=122.7
Q ss_pred cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCC---CCEEE
Q 016547 29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVL 103 (387)
Q Consensus 29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~---~~~l~ 103 (387)
.--.....|+|.| +++++++ ..+|.|++++. ++. . .+..+. .........|+++|+ +..|.
T Consensus 26 ~~l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d~-~G~--~---------~~~~~~v~~~g~~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 26 SDLEVPWSIAPLG-GGRYLVT-ERPGRLVLISP-SGK--K---------LVASFDVANVGEAGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp CSCSCEEEEEEEE-TTEEEEE-ETTTEEEEECS-SCE--E---------EEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred CCCCCCeEEEEcC-CCeEEEE-eCCCEEEEEeC-CCc--e---------EeeccceeecCCCceeeEEeCCCCCcCCEEE
Confidence 3345678999999 7886666 45699998873 331 1 111110 111123579999997 55554
Q ss_pred EecC----C----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc-eeec-CCCCCeE
Q 016547 104 SGGK----D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIYN-GHEDTVE 173 (387)
Q Consensus 104 s~~~----d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~ 173 (387)
.+.. + ..|..|+......... ..+.+ ..+. .......
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~---------------------------------~~~~l~~~~~~~~~h~~~ 138 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLDGSTFKLK---------------------------------EVKTLIDGIPGAYIHNGG 138 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEECSSSCCEE---------------------------------EEEEEEEEEECCSSCCCC
T ss_pred EEEeccCCCCCcceEEEEEEECCCCcCcC---------------------------------ccEEEEEcCCCCCCcCCc
Confidence 4332 2 4666666553210000 00000 0011 1111246
Q ss_pred EEEEccCCCeeEEEecC-------------CCeEEEEEccCCC---C---ceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547 174 DVTFCPSSAQEFCSVGD-------------DSCLILWDARVGT---S---PVIKVEKAHDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 174 ~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~---~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
.|.|.|+| .++++.+. .|.|.-++....- . .......++ .....++|+|.+++++++-.
T Consensus 139 ~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 139 RIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred eEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence 78999998 66665432 2456666654320 0 001112233 34578999994445444432
Q ss_pred CCC---eEEEEEeccCC----------CCCCCCceEEeccccceEEEEEEc-------CCCCeeEEEecCCCeEEEEeCC
Q 016547 235 ADN---SVRMFDRRNLT----------SNGVGSPINKFEGHSAAVLCVQWS-------PDKSSVFGSSAEDGLLNIWDYE 294 (387)
Q Consensus 235 ~dg---~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~ll~s~~~d~~i~vwd~~ 294 (387)
..+ .|.+......- ......++..+.........++|. .+|. ++++.-..+.|...++.
T Consensus 217 g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 217 GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFG 295 (354)
T ss_dssp CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEEC
T ss_pred CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEEC
Confidence 222 23332211000 000012344442123457788883 4565 56666677888888887
Q ss_pred CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
..+.... ....+.+....+..+++.|+|..+++
T Consensus 296 ~~g~~~~-----------~~~~~~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 296 DNMEVRK-----------ISTFFKNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp GGGCEEE-----------EEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred CCCcccc-----------eeeeccCCCCCeeEEEECCCCcEEEE
Confidence 5322110 01112222457899999999965443
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.81 E-value=0.099 Score=42.82 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=53.2
Q ss_pred eeEEEecC---------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCC
Q 016547 183 QEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLT 248 (387)
Q Consensus 183 ~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~ 248 (387)
.+++.|+. -..+.+||+.+.+...+..... ...-.++... ++.+++.|+.+ ..+.+||..+..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 66777653 3458899998876432222111 1111222222 56777777754 357888887632
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 295 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~ 295 (387)
...+..+.........+.+ +++ |++.|+.+ ..+.+||+..
T Consensus 228 ----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 228 ----WKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp ----EEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTT
T ss_pred ----EEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCC
Confidence 2222222211111222333 344 66677743 4578888776
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.75 E-value=0.061 Score=43.99 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=52.8
Q ss_pred eeEEEecCC-------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCC
Q 016547 183 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSN 250 (387)
Q Consensus 183 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 250 (387)
.+++.|+.+ ..+.+||+.+.+...+..... ...-.++... ++.+++.|+.+ ..+.+||..+..
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 231 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-- 231 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence 677776642 458899998776433222211 1111222222 57788888765 368888887622
Q ss_pred CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC-----eEEEEeCCC
Q 016547 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 295 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~-----~i~vwd~~~ 295 (387)
...+..+.........+.+ +++ |++.|+.++ .+.+||+.+
T Consensus 232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCC
Confidence 2222222111111112222 444 666776543 478888876
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.71 E-value=0.31 Score=48.22 Aligned_cols=233 Identities=14% Similarity=0.217 Sum_probs=129.0
Q ss_pred CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547 53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS 132 (387)
Q Consensus 53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 132 (387)
..+|.|-|+..+....+ ++ + .. -+.-.+|..+.++.-+ ..++.|+|+++.......
T Consensus 47 ~~~vvIidl~~~~~~~r-------rp---i--~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~------- 102 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR-------RP---I--SA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH------- 102 (1630)
T ss_pred CceEEEEECCCCCCccc-------cc---c--cc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhccc-------
Confidence 34788999888632110 11 1 11 1334567666666544 679999999865332211
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547 133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212 (387)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 212 (387)
....+|.-=.|-... .++..+ +..|.-|++..... ..+.+..
T Consensus 103 ----------------------------------~~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~-P~k~fdR 144 (1630)
T 1xi4_A 103 ----------------------------------TMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFDR 144 (1630)
T ss_pred ----------------------------------ccCCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCc-cHHHHhc
Confidence 113456666676554 344433 46899999975332 3333333
Q ss_pred c----CCCeeEEEecCCCCCeEEEee-------CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc--CCCCeeE
Q 016547 213 H----DADLHCVDWNPLDDNLILTGS-------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVF 279 (387)
Q Consensus 213 ~----~~~i~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll 279 (387)
| ...|..-..++ +.++++..+ ..|.+.+|.... +.-+.+++|.+.-..+... +....+|
T Consensus 145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEE
Confidence 3 45566677788 777776544 358899998874 4555667776554444432 2222345
Q ss_pred EEecC---CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547 280 GSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356 (387)
Q Consensus 280 ~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw 356 (387)
+.+.. .++++|-++....... +.-......+.+......+-..++..++....+.+... -|.|.+|
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk--------~G~~~~~ 285 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--------YGYIHLY 285 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCC---CCCccccccccCCcccccCcceEEEeccccCEEEEEec--------CceEEEE
Confidence 43322 3789999986531110 00000011112222223445567888887776664333 3899999
Q ss_pred ecCCCcccccchhhhh
Q 016547 357 RMSDLIYRPQDEVLAE 372 (387)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (387)
|+. ++.++-.
T Consensus 286 d~~------t~~~i~~ 295 (1630)
T 1xi4_A 286 DLE------TGTCIYM 295 (1630)
T ss_pred ecc------cchhhhh
Confidence 999 6666543
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.67 E-value=0.2 Score=40.93 Aligned_cols=196 Identities=12% Similarity=0.115 Sum_probs=113.7
Q ss_pred cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547 40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 119 (387)
Q Consensus 40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 119 (387)
+| ..+++|-=. ..++.|+|+++. ..+....-.++ |.-=.|-.+...-+. . +..|.-|++...
T Consensus 75 nP-~~~ViALra-g~~LQiFnletK------------~klks~~~~e~--VvfWkWis~~~L~lV-T-~taVyHWs~~~~ 136 (365)
T 2xzh_A 75 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDD--VTFWKWISLNTVALV-T-DNAVYHWSMEGE 136 (365)
T ss_dssp CS-SSSEEEEEE-TTEEEEEETTTT------------EEEEEEECSSC--EEEEEECSSSEEEEE-E-SSEEEEEESSTT
T ss_pred CC-CccEEEEec-CCeEEEechHHh------------hhhcceecCCc--cEEEEecCCCeEEEE-c-CCcEEEEcccCC
Confidence 66 667777655 578999999998 45555555443 545566544443333 2 468999998742
Q ss_pred cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC----CCCeEEEEEccCCCeeEEEec------
Q 016547 120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 189 (387)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------ 189 (387)
. .+.+.+..| ...|-.-..+++...++++|-
T Consensus 137 s---------------------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 137 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp C---------------------------------------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred C---------------------------------------CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 1 122333332 245666666777644444442
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeEEEeeCC---CeEEEEEeccCC-C-CCCCCceEEe-c-
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD---NSVRMFDRRNLT-S-NGVGSPINKF-E- 260 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d---g~i~~~d~~~~~-~-~~~~~~~~~~-~- 260 (387)
-.|.+.+|..+.+. ...+.+|......+...-. ...+|+.+... +.+++.++.... . .+..+....+ .
T Consensus 178 v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp 254 (365)
T 2xzh_A 178 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 254 (365)
T ss_dssp EEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCC
T ss_pred cceeEEEEeecccc---cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCC
Confidence 23778899887654 5667777665544444220 12344444332 689999986541 1 1111111111 1
Q ss_pred --cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 261 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 261 --~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.-.+-.-++..++.... +..-+.-|.|++||+.++
T Consensus 255 pea~~DFPVamqvs~kygv-iyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG 291 (365)
T ss_dssp TTCTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTC
T ss_pred ccccCCceEEEEecccCCE-EEEEeCCcEEEEEEcccC
Confidence 11333457888887764 446778999999999996
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.59 E-value=0.24 Score=40.75 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=52.9
Q ss_pred eeEEEecCC--------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-C-----CeEEEEEeccCC
Q 016547 183 QEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D-----NSVRMFDRRNLT 248 (387)
Q Consensus 183 ~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~ 248 (387)
.+++.|+.+ ..+.+||..+.+.......... ..-.+++. - ++.+++.|+. + ..+.+||..+..
T Consensus 100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-VYGHTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-ccceeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 677777732 4588999887663222222111 11122222 2 5678888876 2 468888887632
Q ss_pred CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC-----eEEEEeCCCC
Q 016547 249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEKV 296 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~-----~i~vwd~~~~ 296 (387)
...+..+......-..+.+ +++ |++.|+.++ .+.+||+.+.
T Consensus 177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTT
T ss_pred ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCC
Confidence 2222222111111112222 444 666776543 4788888763
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.40 E-value=0.16 Score=42.67 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=27.9
Q ss_pred CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC------CCeEEEEEe
Q 016547 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDR 244 (387)
Q Consensus 192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~~~d~ 244 (387)
..+.+||..+.++..+.........-.+++.. ++.+++.|+. ...+..||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57899999887754333322111111233333 5677777764 235667776
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.30 E-value=0.17 Score=41.43 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=52.4
Q ss_pred eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCCCC
Q 016547 183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 252 (387)
Q Consensus 183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~ 252 (387)
.+++.|+.+ ..+.+||+.+.+...+..... ...-.++... ++.+++.|+.+ ..+.+||+.+..
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~---- 242 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET---- 242 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence 677777654 458899988766322222111 1111222222 56788888765 458888887632
Q ss_pred CCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 295 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~ 295 (387)
...+..+.........+.+ +++ |++.|+.+ ..+.+||+.+
T Consensus 243 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 243 WTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred EEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCC
Confidence 2222222111111112222 344 66677643 3467777765
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.25 E-value=0.46 Score=40.41 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=82.3
Q ss_pred CCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC------CCceEEec
Q 016547 191 DSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV------GSPINKFE 260 (387)
Q Consensus 191 dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~ 260 (387)
++.||.-++..... .+.+.. ....|..+..+| +|++||..+ +..|.+..+........ .-..+.+.
T Consensus 40 ~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~ 115 (452)
T 3pbp_A 40 DNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYS 115 (452)
T ss_dssp TTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEE
T ss_pred CCEEEEEECCCCCc--ceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEE
Confidence 47888888775432 223222 123688999999 999999885 45688888773211100 01122332
Q ss_pred c------ccceEEEEEEcCCCCe--eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547 261 G------HSAAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332 (387)
Q Consensus 261 ~------~~~~i~~~~~~~~~~~--ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (387)
- ...+|..+.|+|-+.. -|++-..|+.|++||+........ ... .. ...+........|.+++|.++
T Consensus 116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~---k~-~~~fg~d~~~~ev~S~~Fg~~ 190 (452)
T 3pbp_A 116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN---KP-NNSFGLDARVNDITDLEFSKD 190 (452)
T ss_dssp GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES---CC-CSEEESCSSCCCEEEEEECTT
T ss_pred cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh---cc-ccccCCCcccceEEEEEEcCC
Confidence 1 2467999999996432 355777899999999997321111 000 00 011233344568899999996
Q ss_pred CCeEEE
Q 016547 333 DPWTVV 338 (387)
Q Consensus 333 ~~~l~~ 338 (387)
+=.|.+
T Consensus 191 ~lTLYv 196 (452)
T 3pbp_A 191 GLTLYC 196 (452)
T ss_dssp SSCEEE
T ss_pred CcEEEE
Confidence 644443
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.22 E-value=0.45 Score=39.91 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=58.8
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
-..++|.|+|+++++ ..+|.|.+++. ++. ...... .......
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~-----------------------------------~v~~~g~ 72 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASF-----------------------------------DVANVGE 72 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEEC-----------------------------------CCCCSTT
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeecc-----------------------------------ceeecCC
Confidence 369999999985554 55699988863 221 000000 0011123
Q ss_pred CCeEEEEEccC---CCeeEEEecC---C----CeEEEEEccCCC-----Cc-eeEEee-ccCCCeeEEEecCCCCCeEEE
Q 016547 170 DTVEDVTFCPS---SAQEFCSVGD---D----SCLILWDARVGT-----SP-VIKVEK-AHDADLHCVDWNPLDDNLILT 232 (387)
Q Consensus 170 ~~v~~~~~~~~---~~~~l~~~~~---d----g~i~iwd~~~~~-----~~-~~~~~~-~~~~~i~~~~~~~~~~~~l~~ 232 (387)
.....|+++|+ ++.++++-+. + ..|..|+..... .. ....+. ........|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 45789999997 4355555432 3 567777766541 00 111122 1112356899999 8887776
Q ss_pred ee
Q 016547 233 GS 234 (387)
Q Consensus 233 ~~ 234 (387)
-+
T Consensus 152 ~G 153 (354)
T 3a9g_A 152 TG 153 (354)
T ss_dssp CC
T ss_pred EC
Confidence 44
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.19 E-value=0.46 Score=39.80 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=21.1
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQ 117 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 117 (387)
-..|+|.|+|++|+.+...|.|++++..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 3699999999944445567999988753
No 325
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.15 E-value=1.2 Score=44.00 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 248 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 248 (387)
.+.|++++-. +| ++++.. ...|++|++...+ .+.....+-..|..+.... .++++++|..-..|.++..+..
T Consensus 885 ~g~v~al~~~-~g-~Lla~i--g~~l~vy~l~~~~--~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~- 956 (1158)
T 3ei3_A 885 KGAVYSMVEF-NG-KLLASI--NSTVRLYEWTTEK--ELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPM- 956 (1158)
T ss_dssp SSCEEEEEEE-TT-EEEEEE--TTEEEEEEECTTS--CEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETT-
T ss_pred CCcCEEEeee-CC-EEEEEc--CCEEEEEECCCCc--eEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcC-
Confidence 5678887754 23 544443 4789999997655 2221111222244333333 5789999998888888776542
Q ss_pred CCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 249 SNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
...+..+ ......++++.|-.++. ++.+..+|.+.+.....
T Consensus 957 ----~~~L~~~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 957 ----EGNFEEIARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ----TTEEEEEEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECT
T ss_pred ----CCeEEEEEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCC
Confidence 2222222 23456788998876654 45788899999998765
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.78 E-value=1.8 Score=43.17 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=108.4
Q ss_pred cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547 40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 119 (387)
Q Consensus 40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 119 (387)
+| ..+++|-=. ..++.|+|+++. ..+....-... |.-=.|-.+... +-.+ +..|.-|++...
T Consensus 74 nP-~~~iiALra-g~~lQiFnl~~k------------~klks~~~~e~--VvfWkWis~~~l-~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 74 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDD--VTFWKWISLNTV-ALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred CC-CcceEEEec-CCeEEEeehHHh------------hhhcccccCCC--ceEEEecCCCee-EEEc-CCeEEEeccCCC
Confidence 55 556776654 678999999988 34444444332 444455544433 3222 468999999641
Q ss_pred cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC----CCCeEEEEEccCCCeeEEEec------
Q 016547 120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 189 (387)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------ 189 (387)
. .|...+..| ...|..-..+++...++++|-
T Consensus 136 s---------------------------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~ 176 (1630)
T 1xi4_A 136 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (1630)
T ss_pred C---------------------------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCc
Confidence 1 112222222 244656666676634444432
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEec--CCCCCeEEEeeC---CCeEEEEEeccC-CCCC-CCCc-eEEecc
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSA---DNSVRMFDRRNL-TSNG-VGSP-INKFEG 261 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~---dg~i~~~d~~~~-~~~~-~~~~-~~~~~~ 261 (387)
-.|.+.+|.++.+. ...+.+|......+... +....+++.+.. .+.+++.++... ...+ ..+. +..+..
T Consensus 177 v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~ 253 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (1630)
T ss_pred ccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence 45889999987765 34556666655444442 212233333322 278999998654 1111 0111 111111
Q ss_pred ---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547 262 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 297 (387)
Q Consensus 262 ---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~ 297 (387)
-..-..++..++.... +..-+.-|.|++||+.++.
T Consensus 254 ~~~~~Dfpv~~~vs~k~g~-iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred cccccCcceEEEeccccCE-EEEEecCceEEEEecccch
Confidence 1223446777777664 4466779999999999863
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.65 E-value=0.9 Score=38.84 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=115.0
Q ss_pred cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547 40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 119 (387)
Q Consensus 40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 119 (387)
+| ..+++|-=. ..++.|+|+++. ..+....-..+ |.-=.|-.+.. |+-.+ +..|.-|++...
T Consensus 74 nP-~~~iiALra-g~~lQiFnle~K------------~klks~~~~e~--VvfWkWis~~~-l~lVT-~taVyHWsi~~~ 135 (494)
T 1bpo_A 74 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDD--VTFWKWISLNT-VALVT-DNAVYHWSMEGE 135 (494)
T ss_dssp CS-SSSCEEEEE-TTEEEEEETTTT------------EEEEEEECSSC--CCEEEEEETTE-EEEEC-SSEEEEEESSSS
T ss_pred CC-CCcEEEEec-CCeEEEEchHHh------------hhhcceecCCC--ceEEEecCCCe-EEEEc-CCeeEEecccCC
Confidence 66 566776654 578999999998 44445544443 43455554433 33333 568999999641
Q ss_pred cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC----CCCeEEEEEccCCCeeEEEec------
Q 016547 120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 189 (387)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------ 189 (387)
. .+.+.+..| ...|..-..+++...++++|-
T Consensus 136 s---------------------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 136 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp C---------------------------------------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred C---------------------------------------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 1 122333332 245666666777744444432
Q ss_pred CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeEEEeeCC---CeEEEEEeccCC-C-CCCCCceEEec--
Q 016547 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD---NSVRMFDRRNLT-S-NGVGSPINKFE-- 260 (387)
Q Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d---g~i~~~d~~~~~-~-~~~~~~~~~~~-- 260 (387)
-.|.+.+|..+.+. ...+.+|......+..... ...+++.+... +.+++.++.... . .+..+....+.
T Consensus 177 v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp 253 (494)
T 1bpo_A 177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (494)
T ss_dssp EEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred ccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence 24788999988765 5667777766655555321 12344444443 789999987541 1 11111111111
Q ss_pred --cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 261 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 261 --~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
.-.+-..++..++.... +..-+.-|.|++||+.++
T Consensus 254 pe~~~DFPvamqvs~kygv-iyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG 290 (494)
T ss_dssp TTSTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTC
T ss_pred cccccCceeEEEecccCCE-EEEEecCceEEEEecccc
Confidence 11334457888887774 446778999999999996
No 328
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.53 E-value=0.9 Score=38.03 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=40.5
Q ss_pred eEEeccccceEEEEEEcC-------CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547 256 INKFEGHSAAVLCVQWSP-------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH 328 (387)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~-------~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (387)
+..+..| ..+..++|.. ++. ++++.-..+.|...++... .... ....+......+..++
T Consensus 264 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~-~~~~-----------~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 264 VFYWKDS-PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGD-KVTE-----------DGRILTDRGQRIRDVR 329 (353)
T ss_dssp SEEESSC-CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETT-EEEE-----------EEEESGGGCCCEEEEE
T ss_pred eEEeCCC-cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCC-eEee-----------eEEcccCCCCceeEEE
Confidence 3344433 4567888864 354 5666667788888887742 2110 0111122335789999
Q ss_pred EccCCCeEEE
Q 016547 329 WNASDPWTVV 338 (387)
Q Consensus 329 ~~~~~~~l~~ 338 (387)
+.|+|..+++
T Consensus 330 ~~pdG~lyv~ 339 (353)
T 2g8s_A 330 TGPDGYLYVL 339 (353)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCcEEEE
Confidence 9999985553
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.47 E-value=0.62 Score=35.71 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=39.8
Q ss_pred eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee-----EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEE
Q 016547 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-----KVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 240 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 240 (387)
..++.|.|++ .+.++ .||.|+-++.-+...... ..-...=..+..|.+.| ++.+.++. |+.++
T Consensus 90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY 157 (236)
T ss_dssp CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence 4788899998 65555 569998887533221111 11111114678999999 88888777 77743
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.44 E-value=0.95 Score=37.67 Aligned_cols=110 Identities=10% Similarity=0.118 Sum_probs=61.9
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 169 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (387)
-..|+|.|+|..+++--..|.|++++..++........ -..+....
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~----------------------------------~~v~~~g~ 79 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV----------------------------------PGVSPSGE 79 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------------------TTCCCBTT
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc----------------------------------CceeecCC
Confidence 47999999999777765589999887543321100000 00112234
Q ss_pred CCeEEEEEccC---CCeeEEEe--cCCCeEEEEEccCCC--------Cce-eEEee-ccCCCeeEEEecCCCCCeEEEee
Q 016547 170 DTVEDVTFCPS---SAQEFCSV--GDDSCLILWDARVGT--------SPV-IKVEK-AHDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 170 ~~v~~~~~~~~---~~~~l~~~--~~dg~i~iwd~~~~~--------~~~-~~~~~-~~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
.....|+++|+ ++.++++- ..++.|.-|.+.... ... +..+. ........|.|.| ++.++++.+
T Consensus 80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 56889999995 32454432 245566666665421 111 11121 1122346799999 888777754
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.42 E-value=0.9 Score=37.28 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=50.8
Q ss_pred eeEEEecCC-------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------CeEEEEEeccCCC
Q 016547 183 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTS 249 (387)
Q Consensus 183 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~ 249 (387)
.+++.|+.+ ..+.+||..+.+........... .-.+++. . ++.+++.|+.+ ..+.+||..+..
T Consensus 111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-YGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE-ESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc-cccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 677777653 34788888876632222111110 1112222 2 67777777642 358888887632
Q ss_pred CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV 296 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~ 296 (387)
...+..+.........+.+ +++ |++.|+.+ ..+.+||+.+.
T Consensus 187 ---W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 187 ---WKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTC
T ss_pred ---EEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCC
Confidence 2222222111111112222 344 56666543 34778888763
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.35 E-value=1.3 Score=38.62 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.8
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQ 117 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 117 (387)
-..|+|.|+|+++++-...+.|.+++..
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 4699999999977765544578877654
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.06 E-value=1.5 Score=40.60 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=39.6
Q ss_pred CCCeeEEEecCCC--eEEEEEccCCCCceeEE---eeccCCCeeEEEecCCCCCeEEEeeC--C-----CeEEEEEecc
Q 016547 180 SSAQEFCSVGDDS--CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSA--D-----NSVRMFDRRN 246 (387)
Q Consensus 180 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~--d-----g~i~~~d~~~ 246 (387)
++ .+++.|+.++ .+.+||..+..+..... .........++.+....+.+++.|+. + +.+..||+.+
T Consensus 500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 44 6777777654 68999998876432221 11112222335555523678888876 2 4588899887
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.92 E-value=0.87 Score=37.36 Aligned_cols=63 Identities=16% Similarity=0.361 Sum_probs=35.0
Q ss_pred CCCeeEEEecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEecc
Q 016547 180 SSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRN 246 (387)
Q Consensus 180 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~ 246 (387)
++ .+++.|+. -..+.+||+.+.+...+..... ...-.+++.. ++.+++.|+.+ ..+.+||..+
T Consensus 158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp TT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 44 67777764 2458999998876432222211 1111223332 56777777654 3466788775
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.88 E-value=0.11 Score=39.70 Aligned_cols=110 Identities=5% Similarity=0.040 Sum_probs=61.3
Q ss_pred CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee----EEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI----KVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
.+..++|+|++ .+.++ .+|.+.-.+..+...... ..+-. --....++.|+| ++.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 67799999988 65555 778777766644321110 11100 001147889999 8888877 56988777643
Q ss_pred cCCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547 246 NLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 289 (387)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~ 289 (387)
+.........-..+ ..-=..+..|.|.|+|. |.|.. |+.+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY 157 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence 21110000000111 10113578999999997 55444 77754
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.86 E-value=1.8 Score=37.69 Aligned_cols=112 Identities=10% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCC---CCeEEEeeC----
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLD---DNLILTGSA---- 235 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~---~~~l~~~~~---- 235 (387)
-...+.|+|.|+| .++++-...+.|++++...+....+..+.. ....+..|+++| + +..|.++..
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecccc
Confidence 4567899999998 666655444578888765554222222211 245677999999 5 444544432
Q ss_pred ---------CCeEEEEEeccCCCC-CCCCceE-Eecc-ccceEEEEEEcCCCCeeEEEec
Q 016547 236 ---------DNSVRMFDRRNLTSN-GVGSPIN-KFEG-HSAAVLCVQWSPDKSSVFGSSA 283 (387)
Q Consensus 236 ---------dg~i~~~d~~~~~~~-~~~~~~~-~~~~-~~~~i~~~~~~~~~~~ll~s~~ 283 (387)
...|.-|+....... ...+.+. .+.. .......|+|.|+|.. +++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L-yv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI-YYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE-EEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE-EEEEC
Confidence 134555555421000 0011111 1221 1234689999999984 44543
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.43 E-value=1.7 Score=35.52 Aligned_cols=61 Identities=10% Similarity=0.156 Sum_probs=35.1
Q ss_pred eeEEEecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-----eEEEEEecc
Q 016547 183 QEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRN 246 (387)
Q Consensus 183 ~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~ 246 (387)
.+++.|+. -..+.+||+.+.+...+..... ...-.+++.. ++.+++.|+.++ .+.+||..+
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 67777765 2468899988776432222211 1111222222 567888887654 477888776
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.16 E-value=2.1 Score=35.58 Aligned_cols=255 Identities=11% Similarity=0.117 Sum_probs=128.1
Q ss_pred eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE----eccCCCceEEEEECCC---
Q 016547 26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCPT--- 98 (387)
Q Consensus 26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~~~~--- 98 (387)
....--...+.|+|.| +++++++--..|.|++++..++.. ..+..+ ..... ....|+++|+
T Consensus 26 ~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~----------~~v~~~~~v~~~g~~-GllGia~~Pdf~~ 93 (347)
T 3das_A 26 TVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK----------TELGEVPGVSPSGEG-GLLGIALSPDYAS 93 (347)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE----------EEEEECTTCCCBTTB-SEEEEEECTTHHH
T ss_pred EeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE----------eeecccCceeecCCC-CceeeEecccccc
Confidence 3334456789999999 888888866589999988655421 011111 11122 3579999995
Q ss_pred CCEEEEe---cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc-eee---cCCCCC
Q 016547 99 EPYVLSG---GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIY---NGHEDT 171 (387)
Q Consensus 99 ~~~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 171 (387)
+.+|... ..++.|.-|.+........ .....+.+ ..+ ..| .
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~------------------------------~~~~~~~i~~~~p~~~~H--~ 141 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDEKKPSGE------------------------------QLGAPDTVFRGIPKGVIH--N 141 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCTTSCTTC------------------------------CBCCCEEEEEEECCCSSC--C
T ss_pred CCEEEEEEecCCCCEEEEEEeCCCCcccc------------------------------cCCCcEEEEEcCCCCCCc--c
Confidence 3444332 2344555555443110000 00000000 011 123 3
Q ss_pred eEEEEEccCCCeeEEEecC-------------CCeEEEEEccCCC---Cc---eeEEeeccCCCeeEEEecCCCCCeEEE
Q 016547 172 VEDVTFCPSSAQEFCSVGD-------------DSCLILWDARVGT---SP---VIKVEKAHDADLHCVDWNPLDDNLILT 232 (387)
Q Consensus 172 v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~ 232 (387)
...|.|.|+| .++++.+. .|.|.-.+....- .+ ......+| .....++|+| ++.++++
T Consensus 142 g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp-~G~L~~~ 218 (347)
T 3das_A 142 GGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDD-KQRLFAS 218 (347)
T ss_dssp CCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECT-TCCEEEE
T ss_pred CccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECC-CCCEEEE
Confidence 4679999998 66666432 3455555544220 00 01112233 3467899999 7776655
Q ss_pred ee-CCCeEEEEEeccCCC------------CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547 233 GS-ADNSVRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 299 (387)
Q Consensus 233 ~~-~dg~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~ 299 (387)
=. .|+.=.|.-+....+ .....++..+..+......++|.. +. +|...-..+.|....+...+.
T Consensus 219 d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~- 295 (347)
T 3das_A 219 EFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAA- 295 (347)
T ss_dssp ECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEE-
T ss_pred ecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCce-
Confidence 32 233222222222111 011234445543334567788864 44 565666666676666654211
Q ss_pred eccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547 300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV 340 (387)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~ 340 (387)
.. .....+.+....+.+++..|||..++++-
T Consensus 296 ~~----------~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 296 AA----------DPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp SS----------CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ec----------ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 00 00112234456899999999987665543
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.41 E-value=1.9 Score=36.00 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=15.4
Q ss_pred CCcEEEEecC-C---------CcEEEEeccCC
Q 016547 43 NTKIVATHTD-S---------PDVLIWDVEAQ 64 (387)
Q Consensus 43 ~~~~l~t~~~-d---------g~v~iwd~~~~ 64 (387)
++.+++.|+. + ..+.+||..+.
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5677777775 2 46888888765
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.30 E-value=2.4 Score=35.12 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=34.1
Q ss_pred eeEEEecCCCeEEEEEccCCCCceeEEeeccC--CC-----eeEEEec----CCCCCeEEEeeCCCeEEEEE
Q 016547 183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--AD-----LHCVDWN----PLDDNLILTGSADNSVRMFD 243 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~-----i~~~~~~----~~~~~~l~~~~~dg~i~~~d 243 (387)
..+++|+.+|.+.-.|+++++ .+..+.... .. ..|.... ...+..++.+..+..+.+.+
T Consensus 112 g~Vy~Gs~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 112 EKVYTGSMRTIMYTINMLNGE--IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp EEEEECEEEEEEEEEETTTCC--EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred CEEEEEecCCEEEEEECCCCc--EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 578999999999999999998 343332211 10 0011110 00245677777777777766
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.40 E-value=3.6 Score=38.11 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=37.3
Q ss_pred EEEccCCCeeEEEecC--C-----CeEEEEEccCCCC------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----
Q 016547 175 VTFCPSSAQEFCSVGD--D-----SCLILWDARVGTS------PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----- 236 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~--d-----g~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----- 236 (387)
+.+....+.+++.|+. + ..+..||+.+... ..+.........-.++.... ++.+++.|+.+
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT-PRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE-TTEEEEECCBCSSCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC-CCEEEEECCccCCCCC
Confidence 4445442367777765 2 4588999988772 22211111111111222222 36777777743
Q ss_pred ---CeEEEEEecc
Q 016547 237 ---NSVRMFDRRN 246 (387)
Q Consensus 237 ---g~i~~~d~~~ 246 (387)
..+.+||..+
T Consensus 623 ~~~~~v~~yd~~t 635 (695)
T 2zwa_A 623 DRTNSIISLDPLS 635 (695)
T ss_dssp CTTTSEEEEETTT
T ss_pred CCCCeEEEEECCC
Confidence 3477777765
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.40 E-value=0.48 Score=41.79 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=56.6
Q ss_pred cCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCC---CC---CCC-ceEEeccccceEEEEEEcCCCCeeEEEecC
Q 016547 213 HDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTS---NG---VGS-PINKFEGHSAAVLCVQWSPDKSSVFGSSAE 284 (387)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~---~~---~~~-~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~ 284 (387)
-......+..+| +|.++++++. +.++.++|++.... .+ ... .+.+.+ -.......+|.++| +.+.+.--
T Consensus 321 ~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfi 397 (638)
T 3sbq_A 321 VPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFI 397 (638)
T ss_dssp ESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETT
T ss_pred CCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeee
Confidence 345567889999 8888887765 78999999985311 00 011 122233 34567889999999 46778889
Q ss_pred CCeEEEEeCCCC
Q 016547 285 DGLLNIWDYEKV 296 (387)
Q Consensus 285 d~~i~vwd~~~~ 296 (387)
|..|.-|++...
T Consensus 398 dSqvvkWni~~a 409 (638)
T 3sbq_A 398 DSQVVKWNMEEA 409 (638)
T ss_dssp TTEEEEEEHHHH
T ss_pred cceEEEEeccHH
Confidence 999999999763
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.18 E-value=8.8 Score=33.43 Aligned_cols=118 Identities=9% Similarity=0.118 Sum_probs=62.4
Q ss_pred CCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEEec---------cccceEEEEEEcCC---CCeeEEE
Q 016547 215 ADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPD---KSSVFGS 281 (387)
Q Consensus 215 ~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~---~~~ll~s 281 (387)
.....|+|.| ++. .|+++...|.|++++...... ...+..+. ..+.....|+|+|+ +.+|+++
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 4567999999 775 566667899999997432100 11222221 11456889999996 3345555
Q ss_pred ecC--C----------CeEEEEeCCCCCceeccCCCCCCCCceeeeeec--cCCCCeeEEEEccCCCeEEEEecC
Q 016547 282 SAE--D----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA--GHRDKVVDFHWNASDPWTVVSVSD 342 (387)
Q Consensus 282 ~~~--d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~s~s~ 342 (387)
-+. + ..|.-|.+........ .....+.+.... .....-..|+|.|||. |.++.++
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~-----d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQV-----DLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSB-----CGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCcc-----CCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 432 1 1344455543110000 000112222222 2223568999999985 6666554
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.69 E-value=8.9 Score=34.14 Aligned_cols=76 Identities=9% Similarity=-0.061 Sum_probs=55.1
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC----------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 239 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 239 (387)
.....+..+|||...++++--+.++.++|++.... ..+.....-.-.....+|++ +++...+-..|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 44567899999977777777899999999984210 01111222345567889999 88777788899999
Q ss_pred EEEEecc
Q 016547 240 RMFDRRN 246 (387)
Q Consensus 240 ~~~d~~~ 246 (387)
.-|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999976
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.66 E-value=24 Score=34.13 Aligned_cols=37 Identities=5% Similarity=0.019 Sum_probs=30.9
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcccc
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT 125 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 125 (387)
.+.+++..++..++++-+.|+++|+|++.++.+....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4567788888899999999999999999988765543
No 346
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=86.48 E-value=22 Score=33.53 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWD 60 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd 60 (387)
.+.|.+|+++|.+...+..++..|.|...+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~ 43 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD 43 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec
Confidence 578999999997677777777777665443
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.62 E-value=15 Score=30.95 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=35.6
Q ss_pred CCeEEEEEccCC-CeeEEEecCCCeEEEEEccCCCCceeEEee----------------ccCCCeeEEEecCCCCCeEEE
Q 016547 170 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEK----------------AHDADLHCVDWNPLDDNLILT 232 (387)
Q Consensus 170 ~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~~ 232 (387)
..|.++++.|.+ +..+..+...+.|...+-............ .....+.+|.++|.+...+..
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 357788888632 244555555565554432211211111110 112357889998844555666
Q ss_pred eeCCCeEE
Q 016547 233 GSADNSVR 240 (387)
Q Consensus 233 ~~~dg~i~ 240 (387)
+..++.|.
T Consensus 195 g~~~ggl~ 202 (394)
T 3b7f_A 195 GMSSGGVF 202 (394)
T ss_dssp EEETBEEE
T ss_pred EECCCCEE
Confidence 65555443
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.83 E-value=26 Score=33.92 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298 (387)
Q Consensus 265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~ 298 (387)
.+.+++..++..+++ +-+.|+++|+|++.++..
T Consensus 237 ~~~~~~~~~~~~~lf-tl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLV-MLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEE-EEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEE-EEECCCEEEEEECCCCCe
Confidence 467778888887654 888999999999998643
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=76.60 E-value=49 Score=30.87 Aligned_cols=109 Identities=8% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-eec----cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA----HDADLHCVDWNPLDDNLILTGSADNSVRMFDR 244 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~ 244 (387)
..|.++....++ .+.+ ++.+ -+..+|..+.+ .... ... ....|.++...+ ++..|..|+. +-+..+|.
T Consensus 146 ~~i~~i~~d~~g-~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 146 NTIYSIIRTKDN-QIYV-GTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp SCEEEEEECTTC-CEEE-EETT-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEET
T ss_pred CeEEEEEEcCCC-CEEE-EeCC-CHhhCccCCCc--eEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcC
Confidence 457888777776 4443 4444 57778876554 1111 111 122478888776 6665556664 44777886
Q ss_pred ccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 245 RNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.+ .+. ..+. .....|.++...++|.. . .|+. +-+.+++...
T Consensus 219 ~~------~~~-~~~~~l~~~~i~~i~~d~~g~l-W-igT~-~Gl~~~~~~~ 260 (758)
T 3ott_A 219 ST------GQI-KQTEAFHNNSIKSLALDGNGDL-L-AGTD-NGLYVYHNDT 260 (758)
T ss_dssp TT------TEE-EEEEEEEEEEEEEEEECTTCCE-E-EEET-TEEEEECCTT
T ss_pred CC------CeE-EeccCCCCCeEEEEEEcCCCCE-E-EEeC-CceeEEecCC
Confidence 65 322 1111 12346888888888874 3 3443 4588888765
No 350
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=71.02 E-value=19 Score=32.50 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=38.6
Q ss_pred EEEEEecCCCCcEEEEecCC------------CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547 34 VNRIRELPQNTKIVATHTDS------------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 101 (387)
Q Consensus 34 v~~i~~~~~~~~~l~t~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~ 101 (387)
.--|+|.| .+++++.-..+ ..+.+.+..++ +..+.+.++.+..++.++|+||++.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g------------~~~rf~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG------------EIRRFMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC------------CEEEEEECCTTCEEEEEEECTTSSE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCC------------eEEEEEeCCCCccCcCeeECCCCCE
Confidence 35678888 66655543222 12334444444 5666778888889999999999887
Q ss_pred EEEe
Q 016547 102 VLSG 105 (387)
Q Consensus 102 l~s~ 105 (387)
|...
T Consensus 545 lfvn 548 (592)
T 3zwu_A 545 LFVG 548 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=70.77 E-value=40 Score=27.23 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=54.1
Q ss_pred EEccCCCeeEEEe---cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCC
Q 016547 176 TFCPSSAQEFCSV---GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNG 251 (387)
Q Consensus 176 ~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~ 251 (387)
.|+++++.++.+- .....|..-++.... ...+..+.. .+++| +++.|.-.+. ...|...++..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g----- 176 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTAS----- 176 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTT-----
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCC-----
Confidence 6677774544444 234456666665444 223333322 34566 6666665444 56777777654
Q ss_pred CCCceEEeccccceEEEEEEcCCCCeeEEEecCC-CeEEEEeCCCC
Q 016547 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKV 296 (387)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-~~i~vwd~~~~ 296 (387)
......+. +... ..+.|++.+|+.+...+ ..|..-++...
T Consensus 177 -~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 177 -QSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp -TEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred -CCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 32222222 2222 23569999877665443 35666666553
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.61 E-value=50 Score=27.81 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=43.5
Q ss_pred ceEEEEEEc---CC----CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC----CCCeeEEEEccC
Q 016547 264 AAVLCVQWS---PD----KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH----RDKVVDFHWNAS 332 (387)
Q Consensus 264 ~~i~~~~~~---~~----~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 332 (387)
..+..+++. |. +.+.+++-+..+.|.|+|+.+...-.......... ........+. ...+..++++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-RPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-SCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-cCcceEECCEEeEeccCceEEEecCC
Confidence 457778777 22 34556676678889999999854432221110000 1112222232 257899999998
Q ss_pred ----CCeEEEEe
Q 016547 333 ----DPWTVVSV 340 (387)
Q Consensus 333 ----~~~l~~s~ 340 (387)
++.|....
T Consensus 231 ~~~~~~~LYf~p 242 (381)
T 3q6k_A 231 DSEGNRPAYYLA 242 (381)
T ss_dssp CTTSCCEEEEEE
T ss_pred cCCCCeEEEEEE
Confidence 67666544
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.54 E-value=50 Score=27.76 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-eec-c--------CCCeeEEEecCCCCCeEEEeeCCC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA-H--------DADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~--------~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
..+.+|.+.|..+..+..+..++.|...+-.......... ... + ...+.+|.++|.+...+.++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 4578888987433444444444444443221111111100 000 0 124788999984456777776555
No 354
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=68.24 E-value=7.3 Score=32.22 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=40.4
Q ss_pred CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-ceEEEEEE--cCCCCeeEEEe-cCCCeEEEEeCCCC
Q 016547 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQW--SPDKSSVFGSS-AEDGLLNIWDYEKV 296 (387)
Q Consensus 227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--~~~~~~ll~s~-~~d~~i~vwd~~~~ 296 (387)
+.++++++.||.|.-+|..+ ++.+-+++... .++....- .+.+..+++.. ..||.|..++...+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~t------G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G 77 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRN------GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEEETTSCEEEEETTT------TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred CCEEEEEeCCCeEEEEECCC------CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence 45788899999999999888 77777776431 12221110 01122344343 57999999998764
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=63.56 E-value=57 Score=26.32 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=56.3
Q ss_pred EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC--eEEEEEeccCCCCCC
Q 016547 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNGV 252 (387)
Q Consensus 175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~ 252 (387)
..++++++.++.+......|..-++..... ..... +... ..+.| ++.+|+-....+ .|..-++.
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~--~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ld------- 215 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSE--ALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNIN------- 215 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEE--EEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSS-------
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCE--EEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECC-------
Confidence 345677756565655567788888766552 22222 2222 34568 777776655443 45444444
Q ss_pred CCceEEeccccceEEEEEEcCCCCeeEEEe-cCCCeEEEEeCCC
Q 016547 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSS-AEDGLLNIWDYEK 295 (387)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~-~~d~~i~vwd~~~ 295 (387)
+.....+.. ..+ ..|+|++.+|+.+. ...+.|..-++..
T Consensus 216 G~~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 216 NPNPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp SCCCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred CCCeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 333344432 223 33778888776542 3345666666665
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.39 E-value=61 Score=26.58 Aligned_cols=178 Identities=9% Similarity=0.013 Sum_probs=94.0
Q ss_pred CCCcEEEEEecCC--CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547 30 HPGEVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 107 (387)
Q Consensus 30 h~~~v~~i~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~ 107 (387)
-...|.++...++ +..++++.+.+|.|+--.+........ .......+... + .+..+........|+..+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-----~G~~~i~lke~-D-~lv~~~~~~~~d~ill~T~ 165 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-----GGIVAVNLRDN-D-ELVGAVLCSAGDDLLLVSA 165 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-----SCEESCBCCTT-C-CEEEEEEECTTCEEEEEET
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-----CceEEEEECCC-C-EEEEEEEecCCCEEEEEEC
Confidence 3455666544432 467899999999999888766432111 00111123332 2 3444444445566777777
Q ss_pred CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547 108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187 (387)
Q Consensus 108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 187 (387)
.|.+..+....+........ ..+.....+. ..+.|.++...+.+ ..++.
T Consensus 166 ~G~~~rf~~~~~eip~~gr~-----------------------------a~Gv~~i~L~-~~d~Vv~~~~~~~~-~~ll~ 214 (327)
T 3uc1_A 166 NGQSIRFSATDEALRPMGRA-----------------------------TSGVQGMRFN-IDDRLLSLNVVREG-TYLLV 214 (327)
T ss_dssp TSEEEEEECCTTTSCCCCTT-----------------------------SBCEESSCCC-TTCCEEEEEECCTT-CEEEE
T ss_pred CCeEEEEECcccccCcCCcC-----------------------------CCCeeeecCC-CCCEEEEEEEECCC-CEEEE
Confidence 89888887762110000000 0000111122 23456666665554 56888
Q ss_pred ecCCCeEEEEEccCCCCc-----eeEE--eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547 188 VGDDSCLILWDARVGTSP-----VIKV--EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246 (387)
Q Consensus 188 ~~~dg~i~iwd~~~~~~~-----~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 246 (387)
.+..|.++.-.+..-... -... +......+..+.... +...++..+.+|.+.-++...
T Consensus 215 ~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 215 ATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred EeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 889999998876543210 1111 111133455544444 455666777888877777654
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.61 E-value=12 Score=37.10 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=29.9
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccC
Q 016547 90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126 (387)
Q Consensus 90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 126 (387)
+.+++..++..++++-+.|+++|+|++.++.+....+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4466677788999999999999999999987655443
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.28 E-value=50 Score=29.63 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCCcEEE-EecC-----------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547 32 GEVNRIRELPQNTKIVA-THTD-----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 99 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~-t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~ 99 (387)
.....|.|.+ ++.+.+ |-.. ...|..++..++ +....+.+.....++.++|+||+
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG------------el~~fl~~P~~aEpnGiafSPD~ 542 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG------------EIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC------------CEEEEEECCTTCEEEEEEECTTS
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCC------------eEEEEEeCCCCccccCCEECCCC
Confidence 3456788888 666655 4221 114555555445 44445555544468999999999
Q ss_pred CEEEEe
Q 016547 100 PYVLSG 105 (387)
Q Consensus 100 ~~l~s~ 105 (387)
+.|.++
T Consensus 543 ktLfV~ 548 (592)
T 4a9v_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 988765
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.56 E-value=11 Score=37.36 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=21.8
Q ss_pred CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547 323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS 359 (387)
Q Consensus 323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~ 359 (387)
.+.+++..++..+++ |-+.|+++|||++.
T Consensus 239 ~~vs~~~~~~~~~lf--------tL~~D~~LRiWsl~ 267 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLV--------MLSLDYKLKVLDLS 267 (1139)
T ss_dssp CBSCCEEETTTTEEE--------EEBTTCEEEEEETT
T ss_pred eeEEeeccCCccEEE--------EEeCCCEEEEEECC
Confidence 455666777777776 55566999999998
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.24 E-value=76 Score=26.01 Aligned_cols=222 Identities=10% Similarity=0.086 Sum_probs=110.3
Q ss_pred CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCe---EEEeccCCCceEEEEECC--CCCEEEEe
Q 016547 31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD---LILTGHQDNAEFALAMCP--TEPYVLSG 105 (387)
Q Consensus 31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~h~~~~v~~~~~~~--~~~~l~s~ 105 (387)
.+.+..+.-.. ..+.|+.-+..|.++-.....-+..... ....++ ..+.. ....+..+.... +..+++..
T Consensus 41 ~D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~---~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~ 115 (327)
T 3uc1_A 41 DDIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRT---ARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLA 115 (327)
T ss_dssp GGCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSS---SCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEE
T ss_pred CCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCcc---CCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEE
Confidence 34455444344 3444555567787765554433221100 001111 01221 122343444443 57799999
Q ss_pred cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547 106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 185 (387)
Q Consensus 106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 185 (387)
+.+|.++--.+.+...... .+.....+.. .+.+..+...... ..+
T Consensus 116 T~~G~iKr~~l~~~~~~~r---------------------------------~G~~~i~lke-~D~lv~~~~~~~~-d~i 160 (327)
T 3uc1_A 116 TRNGLVKKSKLTDFDSNRS---------------------------------GGIVAVNLRD-NDELVGAVLCSAG-DDL 160 (327)
T ss_dssp ETTSEEEEEEGGGGCCCCS---------------------------------SCEESCBCCT-TCCEEEEEEECTT-CEE
T ss_pred cCCCEEEEeEHHHhhcccc---------------------------------CceEEEEECC-CCEEEEEEEecCC-CEE
Confidence 9999999988765321100 0001122233 2344444444343 456
Q ss_pred EEecCCCeEEEEEcc--CCC----C-c--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC---CC
Q 016547 186 CSVGDDSCLILWDAR--VGT----S-P--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---VG 253 (387)
Q Consensus 186 ~~~~~dg~i~iwd~~--~~~----~-~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~ 253 (387)
+..+..|.+..+... .-. . . ....+ .....|.++...+ .+..++..+..|.++.-.+....... .+
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G 238 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 238 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence 667788988888776 211 0 0 01112 2345566766655 56789999999999988876543211 11
Q ss_pred CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
.....+..-.+.+..+....+...++ ..+.+|.+.-++...
T Consensus 239 ~~~~~l~~~~d~lv~~~~~~~~~~i~-l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 239 VLTVMYDRRRGRLVGALIVDDDSELY-AVTSGGGVIRTAARQ 279 (327)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEE-EEEGGGCEEEEEGGG
T ss_pred EEEEEecCCCCeEEEEEEeCCCccEE-EEcCCCeEEEEehhh
Confidence 11122222123344444333334444 455577777777654
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.81 E-value=47 Score=29.96 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=37.5
Q ss_pred CeeEEEecCCCCCeEEEeeCC------------CeEEEEEeccCCCCCCCCceEEecc-ccceEEEEEEcCCCCeeEEEe
Q 016547 216 DLHCVDWNPLDDNLILTGSAD------------NSVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSS 282 (387)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ll~s~ 282 (387)
..-.|+|+| .+++++.-..+ +.+.+.+..+ ++..+-+.. ....++.++|+||++.||+..
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~------g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCC------CeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 346789999 88866654332 1234444433 444333333 357899999999999888654
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.73 E-value=86 Score=28.15 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCeeEEEecCCCCCeEEEeeC------------CCeEEEEEeccCCCCCCCCceEEecc-ccceEEEEEEcCCCCeeEEE
Q 016547 215 ADLHCVDWNPLDDNLILTGSA------------DNSVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGS 281 (387)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~------------dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ll~s 281 (387)
.....|.|++ ++.+.++... .+.+..++..+ ++....+.. ....++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t------Gel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCC------CeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3456789998 7877764322 11455555544 544444433 24678999999999998877
Q ss_pred ecCCC
Q 016547 282 SAEDG 286 (387)
Q Consensus 282 ~~~d~ 286 (387)
...-|
T Consensus 549 vQHPG 553 (592)
T 4a9v_A 549 IQHPG 553 (592)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 64433
No 363
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=52.33 E-value=1.5e+02 Score=27.61 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=59.9
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 245 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 245 (387)
..|.++...+++ .+.+.++..+-|..+|..+.+ ...+.. ....+.++..+. ++.+. .|+..| +..||..
T Consensus 472 ~~i~~i~~d~~g-~lWi~~~t~~Gl~~~d~~~~~---~~~~~~~~~~~~~~~~~i~~d~-~g~lW-igt~~G-l~~~~~~ 544 (758)
T 3ott_A 472 MFINQIIPDNEG-NVWVLLYNNKGIDKINPRTRE---VTKLFADELTGEKSPNYLLCDE-DGLLW-VGFHGG-VMRINPK 544 (758)
T ss_dssp SCEEEEEECTTS-CEEEEETTCSSEEEEETTTTE---EEEECTTTSCGGGCEEEEEECT-TSCEE-EEETTE-EEEECC-
T ss_pred ceeeeEEEcCCC-CEEEEccCCCCcEEEeCCCCc---eEEecCCCcCCCcccceEEECC-CCCEE-EEecCc-eEEEecC
Confidence 358888888887 555433334558888887654 222211 123567777776 56555 445555 7778866
Q ss_pred cCCCCCCCCceEEecc-ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 246 NLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
+.. .+... ..+ ....|.++... +|. |. .++.+| |..+|..+.
T Consensus 545 ~~~----~~~~~-~~gl~~~~i~~i~~~-~g~-lW-i~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 545 DES----QQSIS-FGSFSNNEILSMTCV-KNS-IW-VSTTNG-LWIIDRKTM 587 (758)
T ss_dssp -CC----CCBCC-CCC---CCEEEEEEE-TTE-EE-EEESSC-EEEEETTTC
T ss_pred CCc----eEEec-ccCCCccceEEEEEC-CCC-EE-EECCCC-eEEEcCCCc
Confidence 521 11111 111 12457777764 564 44 344455 777887753
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=49.41 E-value=95 Score=29.27 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-------cCCCeeEEEecCCCCCeEEEee
Q 016547 169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------HDADLHCVDWNPLDDNLILTGS 234 (387)
Q Consensus 169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~ 234 (387)
...|.+|+++|..+..++.+...+.|...+= .++ ....+.. ....+.+|+++|.+.+.+.++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~--tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTS--KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTT--EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCC--CeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4689999999986667777777776665542 222 1222222 1246899999984445555554
No 365
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.31 E-value=1.2e+02 Score=25.46 Aligned_cols=154 Identities=9% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCeEEEEEc---cC----CCeeEEEecCCCeEEEEEccCCCCceeEEee--------------c----cCCCeeEEEecC
Q 016547 170 DTVEDVTFC---PS----SAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------------A----HDADLHCVDWNP 224 (387)
Q Consensus 170 ~~v~~~~~~---~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~----~~~~i~~~~~~~ 224 (387)
..+..+.+. |. +....++=+..+.|.++|+.+++. .+... + -...+..|+++|
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s--wRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS--WNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE--EEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE--EEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 456677766 22 213344555678899999988762 22210 0 023677888888
Q ss_pred CC----CCeEEEeeCCCeEEEEEecc--CCCCCCCCceEEeccc--cceEEEEEEc-CCCCeeEEEecCCCeEEEEeCCC
Q 016547 225 LD----DNLILTGSADNSVRMFDRRN--LTSNGVGSPINKFEGH--SAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 225 ~~----~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~--~~~i~~~~~~-~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
+ ++.|.-....+ -++|.+.+ .........+..+-.. ...-..+++. .+|. |+.+--....|..|+...
T Consensus 230 -~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 230 -RDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -CCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred -CcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 5 56666655544 23343332 1111112222222111 1334456775 4554 677778889999999875
Q ss_pred -CCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547 296 -VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV 338 (387)
Q Consensus 296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (387)
.-.+.. ...+.. ...-..+.++.+.+++...+.
T Consensus 307 ~~~~~~n---------~~~l~~-d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 307 MPLRMKN---------TDVVYT-SSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp CSBCGGG---------EEEEEE-CTTCCSEEEEEECTTSCEEEE
T ss_pred CccccCc---------eEEEEE-CCCccccCeEEECCCCeEEEE
Confidence 210000 011221 123346788888777654443
No 366
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=43.81 E-value=1.7e+02 Score=27.23 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEEeeCCCe-------
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNS------- 238 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~------- 238 (387)
+.|..|+++|.++..+..+...+.|...+-.......+..... ....|.+|+++|.+.+.++++.....
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Q ss_pred EEEEEeccCCCCCCCCceEEeccccc---------eEEEEEEcCCCCeeEEEecCC-CeEEE
Q 016547 239 VRMFDRRNLTSNGVGSPINKFEGHSA---------AVLCVQWSPDKSSVFGSSAED-GLLNI 290 (387)
Q Consensus 239 i~~~d~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~ll~s~~~d-~~i~v 290 (387)
..||-.... ++.-..+..... .+..|+++|.....+..+... +.|..
T Consensus 103 ~~l~~S~Dg-----G~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~ 159 (737)
T 2cn3_A 103 GAILRSTDR-----GETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWR 159 (737)
T ss_dssp CEEEEESSS-----SSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEE
T ss_pred ccEEEeCCC-----CCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEE
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=41.47 E-value=24 Score=32.59 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=28.7
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCC
Q 016547 89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP 127 (387)
Q Consensus 89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 127 (387)
.|.++.+ +..++++-+.|+++|+|++.+++.....+.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 5666655 477999999999999999999876544433
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=39.47 E-value=1.4e+02 Score=23.64 Aligned_cols=145 Identities=13% Similarity=0.144 Sum_probs=76.0
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
..|..++.... ..++. . +|.|..|-....-+.. ........|..++... ...+.-. ||.|..|-....
T Consensus 102 ~~v~~ia~G~~--hs~al-~-~G~v~~wG~n~~gqlg--~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~-- 169 (282)
T 3qhy_B 102 SGVDAIAAGAW--ASYAL-K-DGKVIAWGDDSDGQTT--VPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYF-- 169 (282)
T ss_dssp SSEEEEEEETT--EEEEE-E-TTEEEEEECCTTSTTS--CCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTT--
T ss_pred CCeEEEECcCC--EEEEE-e-CCeEEEecCCCCCcCC--CCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCC--
Confidence 36777776543 23333 3 8999999765432111 1112234577776543 2223334 799999976642
Q ss_pred CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (387)
++. ..-......|..++--... .++. .||.|..|=.....+.-. + ......|..++-
T Consensus 170 ---gql-g~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~--------p-------~~~~~~v~~i~~ 226 (282)
T 3qhy_B 170 ---GQT-TVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTV--------P-------TEALSGVSAIAS 226 (282)
T ss_dssp ---STT-SCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCC--------C-------GGGGSSCCEEEE
T ss_pred ---CCC-CCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCC--------C-------cccCCCceEEEc
Confidence 111 1111113457777765443 3333 599999997665433210 0 011134666665
Q ss_pred ccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547 330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360 (387)
Q Consensus 330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~ 360 (387)
.... .+++ + ||.|..|-.+.
T Consensus 227 G~~h-~~al-------~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 227 GEWY-SLAL-------K---NGKVIAWGSSR 246 (282)
T ss_dssp CSSC-EEEE-------E---TTEEEEESTTC
T ss_pred CCCE-EEEE-------E---CCEEEEecCCC
Confidence 4432 2332 2 49999998773
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.47 E-value=53 Score=30.36 Aligned_cols=28 Identities=7% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 259 (387)
Q Consensus 226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 259 (387)
+..++++-+.|.++|+|++++ ++++.+.
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t------~~lv~t~ 257 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTS------FTLIQDY 257 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTT------TEEEEEE
T ss_pred CCcEEEEEEcCCeEEEEEcCC------CceEEee
Confidence 467999999999999999998 5555544
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=26.21 E-value=2.6e+02 Score=22.55 Aligned_cols=161 Identities=9% Similarity=0.008 Sum_probs=84.2
Q ss_pred CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547 98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 177 (387)
Q Consensus 98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (387)
++.+++..+.+|.++--.+.+...... .+.....+..+ +.+-.+..
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r---------------------------------~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRT---------------------------------AGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCT---------------------------------TCEESSCCCTT-CCEEEEEE
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhcccc---------------------------------CCeEEEEECCC-CEEEEEEE
Confidence 566788889999999988764211100 00011122233 44444444
Q ss_pred ccCCCeeEEEecCCCeEEEEEccCCCC-----ceeEEe-eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC-
Q 016547 178 CPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN- 250 (387)
Q Consensus 178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~- 250 (387)
.... ..++..+.+|.+..++...-.. .-.... ......|.++...+ ++..+++.+..|.++-.++......
T Consensus 154 ~~~~-~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 154 TSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp ECTT-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred eCCC-CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCC
Confidence 4333 4566777888888887643210 001111 12345566666554 5567888899999998887653211
Q ss_pred --CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547 251 --GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295 (387)
Q Consensus 251 --~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~ 295 (387)
..+.....+..-.+.+-.+....+...++ ..+.+|.+.-+++..
T Consensus 232 Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~-~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 232 RATKGVISIKVTERNGLVVGAVQVDDCDQIM-MITDAGTLVRTRVSE 277 (307)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTCEEE-EEESSCCEEEEEGGG
T ss_pred CCCCCEEeeEecCCCCeEEEEEEeCCCceEE-EEcCCCcEEEEeccc
Confidence 11122222332224444444333333344 445577776666655
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=24.41 E-value=3.1e+02 Score=22.89 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCe---EEEeccCCCceEEEEECC--CCCEEEE
Q 016547 30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD---LILTGHQDNAEFALAMCP--TEPYVLS 104 (387)
Q Consensus 30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~h~~~~v~~~~~~~--~~~~l~s 104 (387)
..+.+..+.... ..+.|+..+..|.++-+....-+..... ....++ ..+.. ....+..+.... ++.+|+.
T Consensus 44 e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~---a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~ 118 (370)
T 3l6v_A 44 EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSN---ARGRPIINWIPLES-GERVQAVLPVREYADNRYVFM 118 (370)
T ss_dssp CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEE
T ss_pred CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcc---cCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEE
Confidence 455666555555 4455555677887776665443221110 000111 11222 222343444432 4568999
Q ss_pred ecCCCeEEEEEcCCC
Q 016547 105 GGKDKSVVLWSIQDH 119 (387)
Q Consensus 105 ~~~d~~i~vwd~~~~ 119 (387)
++..|.++-..+...
T Consensus 119 ~T~~G~vKrt~l~e~ 133 (370)
T 3l6v_A 119 ATRNGTVKKTPLSEF 133 (370)
T ss_dssp EETTSEEEEEEGGGG
T ss_pred EeCCCeEEEeEHHHh
Confidence 999999999988653
No 372
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=24.31 E-value=2.6e+02 Score=22.04 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=55.9
Q ss_pred CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547 170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249 (387)
Q Consensus 170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 249 (387)
..|..++.... ..++. . ||.|..|-.....+.. ....-...|..++... ...++. .||.|..|-......
T Consensus 141 ~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg--~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~gq 210 (282)
T 3qhy_B 141 SGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTT--VPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYKQ 210 (282)
T ss_dssp SSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTS--CCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTST
T ss_pred CCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCC--CceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCCC
Confidence 45777766433 23333 3 7999999765432111 1111234577776643 333333 599999997654211
Q ss_pred CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296 (387)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~ 296 (387)
. +.+. + ....|..++-.... .++.. ||.|..|=....
T Consensus 211 l--g~p~---~-~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 211 T--TVPT---E-ALSGVSAIASGEWY--SLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp T--CCCG---G-GGSSCCEEEECSSC--EEEEE--TTEEEEESTTCC
T ss_pred C--CCCc---c-cCCCceEEEcCCCE--EEEEE--CCEEEEecCCCC
Confidence 1 1111 1 12346666654433 23333 899999976653
No 373
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=22.15 E-value=3.9e+02 Score=23.17 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCc--EEEEecCCCcEEEEeccC
Q 016547 32 GEVNRIRELPQNTK--IVATHTDSPDVLIWDVEA 63 (387)
Q Consensus 32 ~~v~~i~~~~~~~~--~l~t~~~dg~v~iwd~~~ 63 (387)
..-+.|+|.| ++. +|++ ...|.|++++.+.
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~-er~G~i~~~~~~g 45 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFIL-EKEGYVKILTPEG 45 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEE-ETTTEEEEECTTS
T ss_pred CCceEEEECC-CCCeEEEEE-eCCceEEEEeCCC
Confidence 4568999999 653 6655 6789999997543
No 374
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.07 E-value=3.2e+02 Score=23.95 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=42.2
Q ss_pred cEEEEEecC-----CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-CCCceEEEEECCCCCEEEEec
Q 016547 33 EVNRIRELP-----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPYVLSGG 106 (387)
Q Consensus 33 ~v~~i~~~~-----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~~~~~~~~~~l~s~~ 106 (387)
..++|+... .+-..+..|+.+|.|.=.-+........ .....+..+... .+.+|..|.++++..+|..++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~----~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s 480 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHD----LEEVLLEEMTVFREPTTISAMELSTKQQQLYIGS 480 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC---------------CCEEECCSSSCCCCCEEEEETTTTEEEEEB
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccc----cceEEEEEEeecCCCCccceEEEcCCCCEEEEEE
Confidence 356655442 1235678889999875333321100000 000122233332 234789999999999999999
Q ss_pred CCCeEEE
Q 016547 107 KDKSVVL 113 (387)
Q Consensus 107 ~d~~i~v 113 (387)
.++.++|
T Consensus 481 ~~~V~~v 487 (495)
T 1q47_A 481 TAGVAQL 487 (495)
T ss_dssp SSCEEEE
T ss_pred CCeEEEE
Confidence 8876665
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.22 E-value=3.3e+02 Score=21.98 Aligned_cols=176 Identities=9% Similarity=0.009 Sum_probs=89.7
Q ss_pred CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccc-cCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEecCC
Q 016547 32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAV-LGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGKD 108 (387)
Q Consensus 32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~~~d 108 (387)
+.+..+.... ..+.++..+..|.++-.....-+..... .+..-.. ...+..-. ..+..+.... +..+|+..+..
T Consensus 47 D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~-~l~l~~~e-~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 47 DEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISE-LINLGDQE-EILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------CBGGG-TSCCCTTC-CEEEEEEESCCCTTCEEEEEETT
T ss_pred CEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhh-ccCCCCCC-EEEEEEEeccCCCCCEEEEEeCC
Confidence 4444444344 3445666678888777766543221100 0000000 11122211 1333333321 46678888899
Q ss_pred CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547 109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 188 (387)
Q Consensus 109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 188 (387)
|.++-..+.+..... ..+.....+.. .+.+-.+.....+ ..++..
T Consensus 124 G~~kr~~l~~~~~~r---------------------------------~~G~~~i~L~~-~d~lv~~~~~~~~-~~i~l~ 168 (312)
T 1suu_A 124 GKIARFESTDFKAVK---------------------------------SRGVIVIKLND-KDFVTSAEIVFKD-EKVICL 168 (312)
T ss_dssp SEEEEEEGGGGCC-------------------------------------CEECBCCCT-TCCEEEEEEECTT-CEEEEE
T ss_pred CeEEEEEHHHhhccC---------------------------------CCcEEEEecCC-CCEEEEEEEeCCC-CEEEEE
Confidence 999998876431110 00111112222 3455555554433 457778
Q ss_pred cCCCeEEEEEccCCCC-----c--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547 189 GDDSCLILWDARVGTS-----P--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 247 (387)
Q Consensus 189 ~~dg~i~iwd~~~~~~-----~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 247 (387)
+.+|.+..+....-.. . ....+. ....|..+.... ++..+++.+..|..+..++...
T Consensus 169 T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 169 SKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp ETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGS
T ss_pred eCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHh
Confidence 8899999988754210 0 111122 244566665554 5667888899999999988754
No 376
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.78 E-value=3.8e+02 Score=23.53 Aligned_cols=70 Identities=6% Similarity=0.069 Sum_probs=42.5
Q ss_pred CeEEEEEccC----CC-eeEEEecCCCeEEEEEcc-CCC-----CceeEEee--ccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547 171 TVEDVTFCPS----SA-QEFCSVGDDSCLILWDAR-VGT-----SPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADN 237 (387)
Q Consensus 171 ~v~~~~~~~~----~~-~~l~~~~~dg~i~iwd~~-~~~-----~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg 237 (387)
..+.|+...- +. ..++.|+.+|.|+=.-+. ... ...+..+. ....+|..|.+++ +..+|.+++.++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~-~~~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-KQQQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-TTTEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC-CCCEEEEEECCe
Confidence 4666665432 31 356778889987544332 211 01122222 2457899999999 889999999888
Q ss_pred eEEE
Q 016547 238 SVRM 241 (387)
Q Consensus 238 ~i~~ 241 (387)
.+++
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 377
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.40 E-value=4.3e+02 Score=23.49 Aligned_cols=73 Identities=8% Similarity=0.102 Sum_probs=42.7
Q ss_pred cEEEEEecC-CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-CCceE-EEEECCCCCEEEEecCCC
Q 016547 33 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEF-ALAMCPTEPYVLSGGKDK 109 (387)
Q Consensus 33 ~v~~i~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~v~-~~~~~~~~~~l~s~~~d~ 109 (387)
..++|+... .+...+..|+.+|.|.=..+....... .....+.... +.+|. .|.+++++.+|+.++.++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~--------~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~ 472 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGG--------VQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQ 472 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEE--------EEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccc--------eeEEEEEeecCCCccccceEEccCCCeEEEEeccc
Confidence 456665543 244678888999988655554321000 0111222111 33674 899999999999998765
Q ss_pred eEEE
Q 016547 110 SVVL 113 (387)
Q Consensus 110 ~i~v 113 (387)
.++|
T Consensus 473 V~kv 476 (539)
T 3al9_A 473 VTRV 476 (539)
T ss_dssp EEEE
T ss_pred ccee
Confidence 5554
No 378
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.10 E-value=4e+02 Score=24.06 Aligned_cols=59 Identities=7% Similarity=-0.041 Sum_probs=37.5
Q ss_pred eeEEEecCCCeEEEEEccC-CC---CceeEEee--ccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547 183 QEFCSVGDDSCLILWDARV-GT---SPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMF 242 (387)
Q Consensus 183 ~~l~~~~~dg~i~iwd~~~-~~---~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~ 242 (387)
..+..|+.+|.|+-.-+.. .. ...+..+. ....+|..|.+++ +...|.+++.++.+++-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~-~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDA-ERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEET-TTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcC-CCCEEEEEecceEEEcc
Confidence 4667788899876443322 21 11111121 2456889999999 88888888888776653
Done!