BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016548
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|B Chain B, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|C Chain C, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|D Chain D, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
Length = 345
Score = 303 bits (777), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 204/326 (62%), Gaps = 15/326 (4%)
Query: 65 LTYKDAGVDIDAGSELVRRIAKMAXXX-------------XXXXXXXXXXDSYLVAGTDG 111
L+YKDAGVDIDAG+ LV RI + + LV+GTDG
Sbjct: 7 LSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDG 66
Query: 112 VGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 171
VGTKL LA + HDTIGIDLVAM VND+V GA+PLFFLDY+AT L+VD A VI GI
Sbjct: 67 VGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGI 126
Query: 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS 231
+GC QS C L+GGETAEMP Y +YD++GF VG+V+K ++DG + GDVLI L S
Sbjct: 127 AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLIALGS 186
Query: 232 SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGI 291
SG HSNG+SLVR++L SG + + L + L+APT IYVK VL++I V I
Sbjct: 187 SGPHSNGYSLVRKILEVSGCDPQ-TTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAI 245
Query: 292 AHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMV 351
AH+TGGGF +NIPRV P AVI E SW+ P VF W+Q AG +E EM RTFN G+GM+
Sbjct: 246 AHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMI 305
Query: 352 LVV-SKETSHTILEGGRGGYEAYHIG 376
+ + + E + G A+ IG
Sbjct: 306 IALPAPEVDKALALLNANGENAWKIG 331
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio
Cholerae
Length = 349
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 212/328 (64%), Gaps = 16/328 (4%)
Query: 65 LTYKDAGVDIDAGSELVRRI-------------AKMAXXXXXXXXXXXXXDSYLVAGTDG 111
L+YKDAGVDIDAG+ LV RI + LV+GTDG
Sbjct: 11 LSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDG 70
Query: 112 VGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 171
VGTKL LA + HDTIGIDLVAM VND++ GA+PLFFLDY+AT L+VD A +VI GI
Sbjct: 71 VGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGI 130
Query: 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS 231
DGC Q+ C L+GGETAEMP Y +YD++GF VG+V+K+ ++DG + GD LI + S
Sbjct: 131 ADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDALIAVGS 190
Query: 232 SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGI 291
SG HSNG+SLVR++L S ++L + T+GE L+APT IY+K L +I+ + I
Sbjct: 191 SGPHSNGYSLVRKILEVSKADKNERLAGK--TIGEHLLAPTKIYIKSGLKLIAEHDIHAI 248
Query: 292 AHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMV 351
+HITGGGF +NIPRV P+G AVI SW+ P +F+W+Q+ G + EM RTFN G+G++
Sbjct: 249 SHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLI 308
Query: 352 LVVSKETSHTILEGGRG-GYEAYHIGEV 378
+ + K+ ++ + + G A+ IGE+
Sbjct: 309 IALPKDQANAAVALLQAEGETAWVIGEI 336
>pdb|2BTU|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution.
pdb|2BTU|B Chain B, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution
Length = 346
Score = 294 bits (753), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 210/340 (61%), Gaps = 20/340 (5%)
Query: 66 TYKDAGVDIDAGSELVRRIAKMAXXXXXXX--------------XXXXXXDSYLVAGTDG 111
YK AGVDI+AG E V R+ K + LV+GTDG
Sbjct: 4 AYKQAGVDIEAGYEAVSRMKKHVQTTMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDG 63
Query: 112 VGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 171
VGTKL LAF HDTIGID VAM VNDIV GA+PLFFLDY A E E ++KGI
Sbjct: 64 VGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGI 123
Query: 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS 231
+GC+Q+ C L+GGETAEMP Y+ EYDL+GF VGIV K +V G+ I G VLIGL S
Sbjct: 124 SEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLAS 183
Query: 232 SGVHSNGFSLVRRVLAQSG-LSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKG 290
SG+HSNG+SLVR+VL + G LSL LGE L+ PT IYVK +L+++ V G
Sbjct: 184 SGIHSNGYSLVRKVLLEDGELSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYG 243
Query: 291 IAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGM 350
+AHITGGGF +NIPR+ P+G+GA I SWK+ +F +Q+ G++E+ EM FNMGIGM
Sbjct: 244 MAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGM 303
Query: 351 VLVVSKETSHTI---LEGGRGGYEAYHIGEVVNGEGVSYS 387
V+ V +E + I LE G A IG V G GV+++
Sbjct: 304 VVAVKEEDAKDIVRLLE--EQGETARIIGRTVQGAGVTFN 341
>pdb|2V9Y|A Chain A, Human Aminoimidazole Ribonucleotide Synthetase
pdb|2V9Y|B Chain B, Human Aminoimidazole Ribonucleotide Synthetase
Length = 334
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/282 (51%), Positives = 192/282 (68%), Gaps = 4/282 (1%)
Query: 102 DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEV 161
D L +GTDGVGTKL++A HDTIG DLVAM VNDI+ GA+PLFFLDYF+ L++
Sbjct: 26 DPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDL 85
Query: 162 DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDG-KNI 220
+ E V+ GI C ++ C LLGGETAEMPD Y GEYDL+GFAVG +++D + + I
Sbjct: 86 SVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERI 145
Query: 221 VPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLP--SENTTLGEALMAPTVIYVKQ 278
GDV++G+ SSG+HSNGFSLVR+++A+S L P + TLG+ L+ PT IY
Sbjct: 146 TEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIYSHS 205
Query: 279 VLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDS 338
+L ++ +G VK AHITGGG +NIPRV P+ LG + +W++P VF W+QQ G + +
Sbjct: 206 LLPVLRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPRVFSWLQQEGHLSEE 265
Query: 339 EMRRTFNMGIGMVLVVSKETSHTILEG-GRGGYEAYHIGEVV 379
EM RTFN G+G VLVVSKE + IL G + EA+ IG VV
Sbjct: 266 EMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVV 307
>pdb|2Z01|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Geobacillus Kaustophilus
Length = 348
Score = 291 bits (744), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/338 (46%), Positives = 207/338 (61%), Gaps = 16/338 (4%)
Query: 66 TYKDAGVDIDAGSELVRRIAKMAXXXXXXX--------------XXXXXXDSYLVAGTDG 111
YK AGVDI+AG + V + + L++GTDG
Sbjct: 6 AYKQAGVDIEAGYQAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSALGYRQPVLISGTDG 65
Query: 112 VGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 171
VGTKL+LAF HDTIGID VAM VNDI+ GA+PLFFLDY A + ++KG+
Sbjct: 66 VGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAIVKGV 125
Query: 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS 231
DGC ++ C L+GGETAEMP Y EYDL+GFAVG+ +K+ ++ G+ I GD L+GLPS
Sbjct: 126 ADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALVGLPS 185
Query: 232 SGVHSNGFSLVRR-VLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKG 290
SG+HSNG+SLVRR V Q+ LSL + + LGE L+ PT IY K + + +KG
Sbjct: 186 SGLHSNGYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIKG 245
Query: 291 IAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGM 350
+AHITGGG +NIPR+ P G+GA I SW + +F ++++ G +E+ EM FNMGIG+
Sbjct: 246 MAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGL 305
Query: 351 VLVVSKETSHTILEG-GRGGYEAYHIGEVVNGEGVSYS 387
VL VS ET+ ++E G AY IGEV G GVS++
Sbjct: 306 VLAVSPETAAPLVEWLSERGEPAYIIGEVAKGAGVSFA 343
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3M84|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3QTY|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
pdb|3QTY|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
Length = 350
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 185/337 (54%), Gaps = 21/337 (6%)
Query: 65 LTYKDAGVDIDAGSELVRR----------------IAKMAXXXXXXXXXXXXXDSYLVAG 108
L Y+DAGV+I+AG++ V R + D LV
Sbjct: 7 LKYEDAGVNIEAGNQAVERXKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQS 66
Query: 109 TDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 168
DGVGTK ++A G + +G DL + + NDIV GAKP+ FLDY A L+ + E+++
Sbjct: 67 IDGVGTKTKVAVXCGKFENLGYDLFSAATNDIVVXGAKPITFLDYVAHDKLDPAIXEELV 126
Query: 169 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIG 228
KG C + L+GGETAE P Y AGE D G GIV + +++G+NI GD++ G
Sbjct: 127 KGXSKACAECGVSLVGGETAEXPGVYQAGEIDXVGVITGIVDRKRIINGENIKEGDIVFG 186
Query: 229 LPSSGVHSNGFSLVRRVLAQ-SGLSLKDQLPS-ENTTLGEALMAPTVIYVKQVLDIISTG 286
L SSG+H+NG+S R++ +G D P E T+G+ L+ P + Y + D + G
Sbjct: 187 LSSSGLHTNGYSFARKLFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFLDNG 246
Query: 287 -GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFN 345
+KG AHITGGGF +NIPRV P+GLGA I +DS+ PA+FK Q+ G I + E R+FN
Sbjct: 247 VDIKGXAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLXQRIGDISEFEXYRSFN 306
Query: 346 MGIGMVLVVSKETSHTILEGGRG--GYEAYHIGEVVN 380
GIG ++ S++ E + + Y IG++ N
Sbjct: 307 XGIGXTIIASQDQFDKXQELAKKHTNTKLYQIGKITN 343
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
pdb|3MDO|B Chain B, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
Length = 389
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 129/307 (42%), Gaps = 61/307 (19%)
Query: 110 DGVGTKLELAF----ETG---IHDTIGIDLVAMSVNDIVTSGA-KPLFFLDYFATSHLEV 161
DG GTK LA+ ETG + I D + +++D++ GA + + L V
Sbjct: 56 DGAGTKSSLAYXYWKETGDLSVWKGIAQDALIXNIDDLLCVGAVDNILVSSTIGRNKLLV 115
Query: 162 DLAEKVIKGIVDGCQQ---------SDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKD 212
+VI I++G + C GGETA++ D D + K+
Sbjct: 116 --PGEVISAIINGTDELLAELREXGVGCYATGGETADVGDLVRTIIVDST--VTCRXKRS 171
Query: 213 SVVDGKNIVPGDVLIGLPSS-----------GVHSNGFSLVR-----RVLAQS------- 249
V+D KNI GDV++GL SS G SNG + R + LA+
Sbjct: 172 DVIDNKNIQGGDVIVGLASSGQATYEKEYNGGXGSNGLTSARHDVFSKYLAKKYPESYDA 231
Query: 250 ----------GLSLKDQLPSENTTLGEALMAPTVIY---VKQVLDIISTGGVKGIAHITG 296
GL L D++ G+ +++PT Y +K +LD + + + G H +G
Sbjct: 232 AVPKELVYSGGLKLTDKIEELGIDAGKXVLSPTRTYAPVIKVLLDKLRS-QIHGXVHCSG 290
Query: 297 GGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSK 356
G T V K V ++ + +P +F+ IQ+ + SE + FN G + ++
Sbjct: 291 GAQTKVXHFVENK---RVTKDNLFPIPPLFRTIQEQSGTDWSEXYKVFNXGHRXEIYIAP 347
Query: 357 ETSHTIL 363
E + ++
Sbjct: 348 EHAEEVI 354
>pdb|3KIZ|A Chain A, Crystal Structure Of Putative
Phosphoribosylformylglycinamidine Cyclo- Ligase
(Yp_676759.1) From Cytophaga Hutchinsonii Atcc 33406 At
1.50 A Resolution
pdb|3KIZ|B Chain B, Crystal Structure Of Putative
Phosphoribosylformylglycinamidine Cyclo- Ligase
(Yp_676759.1) From Cytophaga Hutchinsonii Atcc 33406 At
1.50 A Resolution
Length = 394
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 113/289 (39%), Gaps = 56/289 (19%)
Query: 110 DGVGTKLELAF----ETG---IHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVD 162
DG GTK LA+ ETG + I D V +++D++ GA L + +
Sbjct: 57 DGAGTKSSLAYVYWKETGDISVWKGIAQDAVIXNIDDLICVGAVDNILLSSTIGRNKNL- 115
Query: 163 LAEKVIKGIVDGCQQSDCVL---------LGGETAEMPDFYAAGEYDLSGFAVGIVKKDS 213
+ +V+ I++G ++ L GGETA++ D D + K+
Sbjct: 116 IPGEVLAAIINGTEEVLQXLRDNGIGIYSTGGETADVGDLVRTIIVDST--VTCRXKRQD 173
Query: 214 VVDGKNIVPGDVLIGLPS-----------SGVHSNGFSLVRR-----VLAQSGLSLKDQL 257
V+ +NI G+V++G S G SNG + R VLA D
Sbjct: 174 VISNENIKAGNVIVGFASYGQTSYETEYNGGXGSNGLTSARHDVFNNVLASKYPESFDPK 233
Query: 258 PSENTTL-----------------GEALMAPTVIYVKQVLDIIST--GGVKGIAHITGGG 298
EN G+ +++PT Y +II G + G+ H +GGG
Sbjct: 234 VPENLVYSGEXNLTDPYLNVPLDAGKLVLSPTRTYAPLXKEIIHQYKGKLDGVVHCSGGG 293
Query: 299 FTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMG 347
T + F +I ++ + VP +F+ IQ E + FN G
Sbjct: 294 QTKVLH--FTDATTHIIKDNLFDVPPLFQLIQGQSNTPWEEXYKVFNXG 340
>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
Length = 629
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 34/238 (14%)
Query: 137 VNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAA 196
+ D++ GA+P D S + + +I+GI D +GGE + YA
Sbjct: 118 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGEL-RISSLYAH 172
Query: 197 GEYDLSGFAVGIVKKDSVVDGKNIVPGDVLI----GLPSSGVHSNGFSLVRRVLAQSGLS 252
++ A G+V+ D +VD K PG V++ G+H F A L+
Sbjct: 173 NPL-VNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASF-------ASEDLT 224
Query: 253 LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKG-L 311
D+ + +G+ +I + L+++ G V+G + GG + KG L
Sbjct: 225 -GDKATKLSIQVGDPFAEKMLI--EAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNL 281
Query: 312 GAVIYED--SWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGR 367
GA+++ D + P + W I +S+ R M +V S + + ILE R
Sbjct: 282 GAIVHLDRVPLREPDMEPW---EILISESQER--------MAVVTSPQKASRILEIAR 328
>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
Length = 603
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 34/238 (14%)
Query: 137 VNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAA 196
+ D++ GA+P D S + + +I+GI D +GGE + YA
Sbjct: 92 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGEL-RISSLYAH 146
Query: 197 GEYDLSGFAVGIVKKDSVVDGKNIVPGDVLI----GLPSSGVHSNGFSLVRRVLAQSGLS 252
++ A G+V+ D +VD K PG V++ G+H F A L+
Sbjct: 147 NPL-VNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASF-------ASEDLT 198
Query: 253 LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKG-L 311
D+ + +G+ +I + L+++ G V+G + GG + KG L
Sbjct: 199 -GDKATKLSIQVGDPFAEKMLI--EAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNL 255
Query: 312 GAVIYED--SWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGR 367
GA+++ D + P + W I +S+ R M +V S + + ILE R
Sbjct: 256 GAIVHLDRVPLREPDMEPW---EILISESQER--------MAVVTSPQKASRILEIAR 302
>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
Length = 603
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 34/238 (14%)
Query: 137 VNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAA 196
+ D++ GA+P D S + + +I+GI D +GGE + YA
Sbjct: 92 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGEL-RISSLYAH 146
Query: 197 GEYDLSGFAVGIVKKDSVVDGKNIVPGDVLI----GLPSSGVHSNGFSLVRRVLAQSGLS 252
++ A G+V+ D +VD K PG V++ G+H F A L+
Sbjct: 147 NPL-VNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASF-------ASEDLT 198
Query: 253 LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKG-L 311
D+ + +G+ +I + L+++ G V+G + GG + KG L
Sbjct: 199 -GDKATKLSIQVGDPFAEKMLI--EAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNL 255
Query: 312 GAVIYED--SWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGR 367
GA+++ D + P + W I +S+ R M +V S + + ILE R
Sbjct: 256 GAIVHLDRVPLREPDMEPW---EILISESQER--------MAVVTSPQKASRILEIAR 302
>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
Resolution
Length = 615
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 137 VNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAA 196
+ D++ GA+P D S + + +I+GI D +GGE + YA
Sbjct: 104 IRDVLAXGARPTAIFDSLHXSRI----IDGIIEGIADYGNSIGVPTVGGEL-RISSLYAH 158
Query: 197 GEYDLSGFAVGIVKKDSVVDGKNIVPGDVLI----GLPSSGVHSNGFSLVRRVLAQSGLS 252
++ A G+V+ D +VD K PG V++ G+H F A L+
Sbjct: 159 NPL-VNVLAAGVVRNDXLVDSKASRPGQVIVIFGGATGRDGIHGASF-------ASEDLT 210
Query: 253 LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKG-L 311
D+ + +G+ +I + L+ + G V+G + GG + KG L
Sbjct: 211 -GDKATKLSIQVGDPFAEKXLI--EAFLEXVEEGLVEGAQDLGAGGVLSATSELVAKGNL 267
Query: 312 GAVIYEDSWKVP 323
GA+++ D +VP
Sbjct: 268 GAIVHLD--RVP 277
>pdb|3VTI|C Chain C, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|D Chain D, Crystal Structure Of Hype-Hypf Complex
Length = 314
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 39/263 (14%)
Query: 128 IGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-LEVDLAEKVIKGIVDGCQQSDCVLLGGE 186
IG V +VND GAKPLF F V+ +K++K + + +++ ++ G+
Sbjct: 49 IGKLAVCGTVNDASMRGAKPLFLTAAFIIEEGFPVEDLKKIVKSMAEAAKEAGVKIVAGD 108
Query: 187 TAEMPDFYAAGEYD---LSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVR 243
T G D ++ +G++ + + V KN PGD+++ + G H R
Sbjct: 109 TK----VVEKGSVDRIFINTSGIGVLYEGANVSIKNAKPGDIVLISGTIGDHGMAVMSAR 164
Query: 244 RVLAQSGLSLKDQLP-----SENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGG 298
L D P + TLGEA+ +VL + GGV + +
Sbjct: 165 EELQFDTPIFSDVAPLNGLIEKLMTLGEAI---------KVLRDPTRGGVAEVLY----- 210
Query: 299 FTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSK-- 356
I ++ G+G IYE+ K+P V + ++ A + N G +V+VV +
Sbjct: 211 ---EISKM--SGVGIKIYEE--KLP-VKESVKSACEFMGIDFLHLANEG-KVVVVVERDY 261
Query: 357 -ETSHTILEGGRGGYEAYHIGEV 378
E + I++ G +A IGEV
Sbjct: 262 AEKALEIMKSHEYGKDAEIIGEV 284
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 128 IGIDLVAMSVNDIVTSGAKPLFF-LDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGE 186
IG V +VND+ GA+P + + L++D+ E+V+ + +++ ++ G+
Sbjct: 70 IGTLAVHGTVNDVSMLGARPRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGD 129
Query: 187 TAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVL 246
T +P A + ++ +G + D G PGD ++ S G H G +++ +
Sbjct: 130 TKVVPR-GACDKMFINTTGIGEILVDPAPSGDRARPGDAILISGSMGDH--GLTILSQ-- 184
Query: 247 AQSGLSLKDQLPSENTTL 264
+ GL+ + S++ +L
Sbjct: 185 -RQGLNFAADVCSDSASL 201
>pdb|2YXZ|A Chain A, Crystal Structure Of Tt0281 From Thermus Thermophilus Hb8
pdb|2YXZ|B Chain B, Crystal Structure Of Tt0281 From Thermus Thermophilus Hb8
pdb|2YXZ|C Chain C, Crystal Structure Of Tt0281 From Thermus Thermophilus Hb8
pdb|2YXZ|D Chain D, Crystal Structure Of Tt0281 From Thermus Thermophilus Hb8
Length = 311
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 128 IGIDLVAMSVNDIVTSGAKPL-FFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGE 186
+G VA + +D++ +PL F L F LE ++++G + ++ LLGG+
Sbjct: 64 VGFRGVAATASDLLAKMGRPLGFTLGLFLPEDLEEGFVLELVRGAAEAAKRLGAFLLGGD 123
Query: 187 T 187
T
Sbjct: 124 T 124
>pdb|2YYE|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus Complexed With Ampcpp
pdb|2YYE|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus Complexed With Ampcpp
pdb|2ZOD|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus
pdb|2ZOD|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus
Length = 345
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 134 AMSVNDIVTSGAKPL--FFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGET 187
A +++D+ G P+ + F L++++ +VI+G +D +++ VLLGG T
Sbjct: 87 ANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHT 142
>pdb|2ZAU|A Chain A, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
pdb|2ZAU|B Chain B, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
pdb|2ZAU|C Chain C, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
Length = 311
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 134 AMSVNDIVTSGAKPL--FFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGET 187
A +++D+ G P+ + F L++++ +VI+G +D +++ VLLGG T
Sbjct: 53 ANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHT 108
>pdb|3C9R|A Chain A, Aathil Complexed With Atp
pdb|3C9R|B Chain B, Aathil Complexed With Atp
pdb|3C9S|A Chain A, Aathil Complexed With Amppcp
pdb|3C9S|B Chain B, Aathil Complexed With Amppcp
pdb|3C9T|A Chain A, Aathil Complexed With Amppcp And Tmp
pdb|3C9T|B Chain B, Aathil Complexed With Amppcp And Tmp
pdb|3C9U|A Chain A, Aathil Complexed With Adp And Tpp
pdb|3C9U|B Chain B, Aathil Complexed With Adp And Tpp
Length = 342
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 124 IHDTIGIDLVAMSVNDIVTSGAKPLF-FLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVL 182
I + +G ++++V+D++ +G P + + LEV E+ G+ C+ C +
Sbjct: 92 IPEAVGWKAISVNVSDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEV 151
Query: 183 LGGETAE 189
+GG ++
Sbjct: 152 VGGNISK 158
>pdb|1VQV|A Chain A, Crystal Structure Of Thiamine Monophosphate Kinase (Thil)
From Aquifex Aeolicus
pdb|1VQV|B Chain B, Crystal Structure Of Thiamine Monophosphate Kinase (Thil)
From Aquifex Aeolicus
Length = 306
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 124 IHDTIGIDLVAMSVNDIVTSGAKPLF-FLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVL 182
I + +G ++++V+D++ +G P + + LEV E+ G+ C+ C +
Sbjct: 56 IPEAVGWKAISVNVSDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEV 115
Query: 183 LGGETAE 189
+GG ++
Sbjct: 116 VGGNISK 122
>pdb|2I2X|B Chain B, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|D Chain D, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|F Chain F, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|H Chain H, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|J Chain J, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|L Chain L, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|N Chain N, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|P Chain P, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 258
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 217 GKNIVPGDVLIGLPSSGVHSNGFSLV---RRVLAQSGLS-LKDQLPSENTTLGEALMAPT 272
GKNIV ++ + +NG+++V R V A+ L+ ++ + P T G ALM T
Sbjct: 139 GKNIV---------TALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLT--GTALMTTT 187
Query: 273 VIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQA 332
+ K+V D++ G+K GG + F G V E++ P + I A
Sbjct: 188 MYAFKEVNDMLLENGIKIPFACGGGAVNQDFVSQFALG---VYGEEAADAPKIADAI-IA 243
Query: 333 GRIEDSEMRRTFN 345
G + +E+R F+
Sbjct: 244 GTTDVTELREKFH 256
>pdb|3U0O|A Chain A, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
pdb|3U0O|B Chain B, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
Length = 347
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 28/201 (13%)
Query: 136 SVNDIVTSGAKPLFFLDY--FATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDF 193
+++DI G KP+ + + + L ++A +V +G C+Q+ L GG + + P+
Sbjct: 88 AISDIFAMGGKPIMAIAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPE- 146
Query: 194 YAAGEYDLSGFAV-GIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLS 252
+ G AV GIV + V G L G+ VL +
Sbjct: 147 ------PIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPLGIG---------VLTTA--E 189
Query: 253 LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLG 312
K L E+ L +M I +I GVK + +TG G ++ + +G G
Sbjct: 190 KKSLLKPEHQGLATEVMCRMNIAGASFANI---EGVKAMTDVTGFGLLGHLSEMC-QGAG 245
Query: 313 A---VIYEDSWKVPAVFKWIQ 330
V YE K+P V ++I+
Sbjct: 246 VQARVDYEAIPKLPGVEEYIK 266
>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD5|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD6|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
pdb|3FD6|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
Length = 394
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 167 VIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVL 226
+I+G D +++ + GG+T P L G A + + + + N VPGDVL
Sbjct: 146 IIQGFKDAAEEAGTSVTGGQTVLNPWIV------LGGVATTVCQPNEFIMPDNAVPGDVL 199
Query: 227 I 227
+
Sbjct: 200 V 200
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 298 GFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKE 357
G ++PR+ +G GA+I + + PA F+ G E+ R ++GIG ++ ++
Sbjct: 148 GTVHSVPRLM-QGQGAIIGAGAMEYPAEFQ-----GASEE----RIADLGIGKLITLTST 197
Query: 358 TSHTILEGGRGG 369
H I++G G
Sbjct: 198 YDHRIIQGAESG 209
>pdb|3SBP|A Chain A, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|B Chain B, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|C Chain C, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|D Chain D, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|E Chain E, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|F Chain F, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|G Chain G, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBP|H Chain H, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form
pdb|3SBQ|A Chain A, Pseudomonas Stutzeri Nitrous Oxide Reductase, P65 Crystal
Form
pdb|3SBQ|B Chain B, Pseudomonas Stutzeri Nitrous Oxide Reductase, P65 Crystal
Form
pdb|3SBR|A Chain A, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|B Chain B, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|C Chain C, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|D Chain D, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|E Chain E, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|F Chain F, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|G Chain G, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
pdb|3SBR|H Chain H, Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal
Form With Substrate
Length = 638
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 193 FYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLS 252
F AAG+ + + I K + GK P DV++G P G+ + R A + L
Sbjct: 337 FIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLF 396
Query: 253 LKDQLPSENTTLGEALMA---PTVIYVKQVLDI 282
+ Q+ N + EA+ A V Y+KQ LD+
Sbjct: 397 IDSQVVKWN--MEEAVRAYKGEKVNYIKQKLDV 427
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 364
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 32/184 (17%)
Query: 202 SGFAVGIVKKDSVV-DGKNIVPGDVLIGLPSSGV-----------HSNGFSLVR------ 243
G VG+ +KDS V D G + + P G+ H ++ +R
Sbjct: 36 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEH 95
Query: 244 -RVLAQSGLSLKDQLPSENTTLGEALMAPTV-IYVKQVLDIISTGGVKGIAHITGGGFTD 301
+L ++ L+ K + E P + + ++ VL + ++G GI +G G T
Sbjct: 96 PTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH 155
Query: 302 NIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGR-IEDSEMRRTFNMGIGMVLVVSKETSH 360
N+P IYE + +P + AGR + D M+ G V +E
Sbjct: 156 NVP----------IYE-GYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR 204
Query: 361 TILE 364
I E
Sbjct: 205 DIKE 208
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 357
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 32/184 (17%)
Query: 202 SGFAVGIVKKDSVV-DGKNIVPGDVLIGLPSSGV-----------HSNGFSLVR------ 243
G VG+ +KDS V D G + + P G+ H ++ +R
Sbjct: 35 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEH 94
Query: 244 -RVLAQSGLSLKDQLPSENTTLGEALMAPTV-IYVKQVLDIISTGGVKGIAHITGGGFTD 301
+L ++ L+ K + E P + + ++ VL + ++G GI +G G T
Sbjct: 95 PTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH 154
Query: 302 NIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGR-IEDSEMRRTFNMGIGMVLVVSKETSH 360
N+P IYE + +P + AGR + D M+ G V +E
Sbjct: 155 NVP----------IYE-GYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR 203
Query: 361 TILE 364
I E
Sbjct: 204 DIKE 207
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 357
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 34/185 (18%)
Query: 202 SGFAVGIVKKDSVV-DGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSE 260
G VG+ +KDS V D G + + P G+ +N + + ++ + + P E
Sbjct: 37 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEGIITN-WDDMEKIWHHTFYNELRVAPEE 95
Query: 261 NTTL-GEALMAPTV-------------------IYVKQVLDIISTGGVKGIAHITGGGFT 300
+ TL EA + P + ++ VL + ++G GI +G G T
Sbjct: 96 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVT 155
Query: 301 DNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGR-IEDSEMRRTFNMGIGMVLVVSKETS 359
N+P IYE + +P + AGR + D M+ G V +E
Sbjct: 156 HNVP----------IYE-GYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIV 204
Query: 360 HTILE 364
I E
Sbjct: 205 RDIKE 209
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 200 DLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSG-VHSNGFSLVRRVLAQSGLSLKDQLP 258
+L G + IV D+ D ++ V G +L SSG V SNG + + A++ +
Sbjct: 258 ELGGKSPMIVFDDA--DIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRR 315
Query: 259 SENTTLGEAL-----MAPTVIYVKQ--VLDIISTGGVKGIAHITGGGFTDNI 303
+E LG+ L + P V +Q VL I G +G ITGGG +N+
Sbjct: 316 TEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNV 367
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1IJJ|B Chain B, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1P8Z|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
pdb|1SQK|A Chain A, Crystal Structure Of Ciboulot In Complex With Skeletal
Actin
pdb|1RGI|A Chain A, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
pdb|3CJB|A Chain A, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|A Chain A, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
pdb|3B5U|A Chain A, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|B Chain B, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|C Chain C, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|D Chain D, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|E Chain E, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|F Chain F, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|G Chain G, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|H Chain H, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|I Chain I, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|J Chain J, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|K Chain K, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|L Chain L, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|M Chain M, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B5U|N Chain N, Actin Filament Model From Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3DAW|A Chain A, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
pdb|2V51|B Chain B, Structure Of Mal-Rpel1 Complexed To Actin
pdb|2V51|D Chain D, Structure Of Mal-Rpel1 Complexed To Actin
pdb|2V52|B Chain B, Structure Of Mal-Rpel2 Complexed To G-Actin
pdb|2VYP|A Chain A, Rabbit-Muscle G-Actin In Complex With Myxobacterial
Rhizopodin
pdb|2VYP|B Chain B, Rabbit-Muscle G-Actin In Complex With Myxobacterial
Rhizopodin
pdb|3FFK|B Chain B, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|E Chain E, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|2YJE|A Chain A, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJE|B Chain B, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJE|C Chain C, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|A Chain A, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|B Chain B, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|C Chain C, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|D Chain D, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|E Chain E, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|3TU5|A Chain A, Actin Complex With Gelsolin Segment 1 Fused To Cobl
Segment
pdb|4EAH|D Chain D, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|H Chain H, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|G Chain G, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|F Chain F, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 377
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 245 VLAQSGLSLKDQLPSENTTLGEALMAPTV-IYVKQVLDIISTGGVKGIAHITGGGFTDNI 303
+L ++ L+ K + E P + + ++ VL + ++G GI +G G T N+
Sbjct: 106 LLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNV 165
Query: 304 PRVFPKGLGAVIYEDSWKVPAVFKWIQQAGR-IEDSEMRRTFNMGIGMVLVVSKETSHTI 362
P IYE + +P + AGR + D M+ G V +E I
Sbjct: 166 P----------IYE-GYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDI 214
Query: 363 LE 364
E
Sbjct: 215 KE 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,857,634
Number of Sequences: 62578
Number of extensions: 460263
Number of successful extensions: 966
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 48
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)