Query 016548
Match_columns 387
No_of_seqs 254 out of 1894
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0150 PurM Phosphoribosylami 100.0 6.3E-85 1.4E-89 624.9 26.2 321 63-383 2-337 (345)
2 KOG0237 Glycinamide ribonucleo 100.0 4.9E-81 1.1E-85 624.2 21.5 348 36-383 395-772 (788)
3 PLN02557 phosphoribosylformylg 100.0 1.7E-77 3.6E-82 594.9 36.8 334 52-387 46-379 (379)
4 TIGR00878 purM phosphoribosyla 100.0 8E-61 1.7E-65 472.9 33.9 317 65-381 1-332 (332)
5 PRK05385 phosphoribosylaminoim 100.0 2.3E-59 5E-64 461.8 32.1 313 65-378 1-327 (327)
6 cd02196 PurM PurM (Aminoimidaz 100.0 3.6E-53 7.9E-58 412.4 29.2 290 90-379 2-297 (297)
7 COG0611 ThiL Thiamine monophos 100.0 7.5E-47 1.6E-51 365.7 28.6 283 77-383 5-296 (317)
8 TIGR02124 hypE hydrogenase exp 100.0 6.2E-46 1.4E-50 365.2 28.1 284 78-386 2-298 (320)
9 TIGR01379 thiL thiamine-monoph 100.0 1.1E-45 2.4E-50 362.8 27.1 286 78-385 3-298 (317)
10 cd02194 ThiL ThiL (Thiamine-mo 100.0 1.7E-45 3.6E-50 357.3 27.0 279 78-379 3-291 (291)
11 cd02197 HypE HypE (Hydrogenase 100.0 7.7E-45 1.7E-49 353.3 26.8 265 89-378 23-293 (293)
12 TIGR00476 selD selenium donor 100.0 1.7E-44 3.7E-49 358.7 27.7 273 89-378 47-346 (347)
13 PRK00943 selenophosphate synth 100.0 1.7E-44 3.7E-49 358.5 26.7 268 89-383 46-339 (347)
14 PRK05731 thiamine monophosphat 100.0 2.4E-44 5.2E-49 353.5 26.6 286 78-384 6-301 (318)
15 PRK14105 selenophosphate synth 100.0 2E-43 4.3E-48 350.8 26.7 277 90-386 45-335 (345)
16 cd02691 PurM-like2 AIR synthas 100.0 1.2E-42 2.6E-47 344.5 31.6 268 90-386 34-311 (346)
17 cd06061 PurM-like1 AIR synthas 100.0 1E-43 2.2E-48 345.7 23.1 264 91-378 31-298 (298)
18 cd02195 SelD Selenophosphate s 100.0 4.1E-41 8.9E-46 326.3 25.3 243 89-378 38-287 (287)
19 COG0309 HypE Hydrogenase matur 100.0 1.6E-41 3.4E-46 326.9 16.8 277 89-385 35-316 (339)
20 TIGR03267 methan_mark_2 putati 100.0 3.5E-40 7.6E-45 324.7 24.4 258 90-386 42-303 (323)
21 cd02192 PurM-like3 AIR synthas 100.0 1.3E-39 2.8E-44 315.2 21.7 250 89-377 32-283 (283)
22 cd00396 PurM-like AIR (aminoim 100.0 1.7E-37 3.7E-42 289.7 22.7 219 104-377 1-222 (222)
23 PRK14090 phosphoribosylformylg 100.0 4.4E-35 9.4E-40 305.8 25.8 275 79-385 34-319 (601)
24 cd02203 PurL_repeat1 PurL subu 100.0 2E-35 4.4E-40 289.7 21.0 257 104-386 27-303 (313)
25 TIGR01736 FGAM_synth_II phosph 100.0 7.5E-36 1.6E-40 322.1 19.1 295 62-385 30-337 (715)
26 cd02204 PurL_repeat2 PurL subu 100.0 5.1E-35 1.1E-39 279.7 19.3 251 94-378 1-264 (264)
27 PRK01213 phosphoribosylformylg 100.0 1.1E-34 2.5E-39 313.0 19.3 292 62-386 42-349 (724)
28 TIGR01736 FGAM_synth_II phosph 100.0 1.3E-32 2.7E-37 297.1 25.2 262 90-385 415-688 (715)
29 PRK01213 phosphoribosylformylg 100.0 3.6E-32 7.7E-37 293.7 25.8 264 90-386 425-699 (724)
30 COG2144 Selenophosphate synthe 100.0 2.3E-33 5E-38 263.1 13.5 255 90-386 41-299 (324)
31 cd02193 PurL Formylglycinamide 100.0 3E-32 6.4E-37 262.4 20.4 249 104-377 2-271 (272)
32 COG0046 PurL Phosphoribosylfor 99.9 2.3E-26 5E-31 241.5 12.7 291 62-384 54-362 (743)
33 COG0046 PurL Phosphoribosylfor 99.9 3.1E-23 6.7E-28 218.0 24.7 261 89-381 444-718 (743)
34 COG0709 SelD Selenophosphate s 99.9 3.2E-24 7E-29 204.1 15.3 264 91-382 48-339 (346)
35 COG1973 HypE Hydrogenase matur 99.9 1.4E-23 3.1E-28 199.7 16.3 294 65-386 67-387 (449)
36 TIGR01735 FGAM_synt phosphorib 99.9 1.5E-22 3.3E-27 227.4 21.9 297 62-385 214-588 (1310)
37 PHA03366 FGAM-synthase; Provis 99.9 3.6E-21 7.7E-26 216.6 24.9 245 103-382 689-949 (1304)
38 TIGR01739 tegu_FGAM_synt herpe 99.9 5.4E-21 1.2E-25 214.4 24.3 243 104-380 594-848 (1202)
39 PRK05297 phosphoribosylformylg 99.9 1.1E-21 2.3E-26 221.2 17.6 244 125-385 300-582 (1290)
40 TIGR01735 FGAM_synt phosphorib 99.9 4.4E-20 9.6E-25 207.7 25.0 257 92-379 692-973 (1310)
41 PLN03206 phosphoribosylformylg 99.8 1.5E-19 3.3E-24 202.2 25.1 262 91-385 683-966 (1307)
42 KOG3939 Selenophosphate synthe 99.8 8.3E-20 1.8E-24 167.8 16.5 269 94-383 2-295 (312)
43 PRK05297 phosphoribosylformylg 99.8 2.1E-19 4.5E-24 202.8 23.4 264 92-386 672-962 (1290)
44 PF00586 AIRS: AIR synthase re 99.8 3.9E-21 8.4E-26 156.7 4.1 94 92-187 1-96 (96)
45 PF02769 AIRS_C: AIR synthase 99.8 5.4E-19 1.2E-23 155.0 12.9 146 221-386 1-150 (153)
46 PLN03206 phosphoribosylformylg 99.7 5.5E-18 1.2E-22 189.8 6.9 241 125-386 303-583 (1307)
47 TIGR01857 FGAM-synthase phosph 99.7 5.1E-15 1.1E-19 165.1 20.8 225 93-381 677-919 (1239)
48 TIGR01857 FGAM-synthase phosph 99.7 2.9E-16 6.3E-21 174.9 10.6 234 125-385 329-584 (1239)
49 PRK14090 phosphoribosylformylg 99.6 1.6E-14 3.4E-19 151.8 17.4 188 90-324 382-574 (601)
50 KOG1907 Phosphoribosylformylgl 98.8 2.9E-07 6.4E-12 98.1 18.9 230 124-378 725-975 (1320)
51 TIGR01739 tegu_FGAM_synt herpe 98.4 3.4E-06 7.3E-11 96.1 13.5 216 143-386 191-446 (1202)
52 KOG1907 Phosphoribosylformylgl 97.6 0.00025 5.4E-09 76.4 9.2 202 164-386 384-605 (1320)
53 PHA03366 FGAM-synthase; Provis 96.8 0.025 5.3E-07 65.6 15.1 222 143-386 282-535 (1304)
54 PF12818 Tegument_dsDNA: dsDNA 95.9 0.65 1.4E-05 45.2 17.1 221 143-384 30-282 (282)
55 COG1476 Predicted transcriptio 77.0 0.8 1.7E-05 34.9 0.1 45 8-52 9-57 (68)
56 PRK12858 tagatose 1,6-diphosph 63.1 5.2 0.00011 40.0 2.4 55 130-184 105-161 (340)
57 PHA01976 helix-turn-helix prot 60.8 3.1 6.7E-05 30.7 0.2 50 7-56 9-62 (67)
58 PF01381 HTH_3: Helix-turn-hel 48.1 5.9 0.00013 27.8 -0.0 43 10-52 6-52 (55)
59 PRK08359 transcription factor; 45.4 9.5 0.00021 34.6 0.9 47 8-54 93-143 (176)
60 TIGR00270 conserved hypothetic 44.9 7.7 0.00017 34.4 0.2 50 7-56 76-129 (154)
61 PRK06424 transcription factor; 44.4 10 0.00023 33.2 0.9 47 8-54 92-142 (144)
62 TIGR03070 couple_hipB transcri 32.7 22 0.00047 24.7 0.9 42 8-49 10-55 (58)
63 PF11823 DUF3343: Protein of u 29.6 1.1E+02 0.0024 23.0 4.5 28 345-372 38-66 (73)
64 PF12844 HTH_19: Helix-turn-he 25.8 22 0.00048 25.7 -0.1 46 8-53 7-56 (64)
65 KOG0125 Ataxin 2-binding prote 25.3 70 0.0015 31.8 3.2 61 313-375 97-166 (376)
66 PRK09943 DNA-binding transcrip 24.7 26 0.00057 31.4 0.2 51 7-57 14-68 (185)
67 COG3721 HugX Putative heme iro 23.6 1.6E+02 0.0034 26.2 4.7 41 327-369 31-71 (176)
68 PRK09726 antitoxin HipB; Provi 23.2 52 0.0011 25.8 1.6 47 8-54 20-70 (88)
69 PRK09706 transcriptional repre 22.8 32 0.0007 29.2 0.4 51 8-58 13-67 (135)
70 PF10126 Nit_Regul_Hom: Unchar 22.6 75 0.0016 26.4 2.4 24 353-376 73-99 (110)
71 PF15569 Imm21: Immunity prote 22.0 1E+02 0.0023 24.8 3.1 24 168-191 17-40 (91)
72 TIGR02612 mob_myst_A mobile my 21.7 37 0.0008 29.9 0.5 49 7-55 32-86 (150)
73 PRK13890 conjugal transfer pro 20.5 35 0.00076 28.7 0.1 64 8-71 13-80 (120)
74 PRK08227 autoinducer 2 aldolas 20.4 59 0.0013 31.4 1.6 53 130-184 93-145 (264)
No 1
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-85 Score=624.94 Aligned_cols=321 Identities=60% Similarity=1.044 Sum_probs=307.9
Q ss_pred CCchhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecCC----ceEEEEeecCCCccccccccCChHHHH
Q 016548 63 EGLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLGD----SYLVAGTDGVGTKLELAFETGIHDTIG 129 (387)
Q Consensus 63 ~~~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~~----~~Lv~ttD~v~tk~~~a~~~~~~~~iG 129 (387)
+.+||++||||||++++++++||+.+ .++|+|+++|+++. +.|+++|||+|||+.+|+.+++|+++|
T Consensus 2 ~~~tY~~aGVDi~~g~~~v~~ik~~vk~T~r~~v~gglGgf~~lf~l~~~~~~p~Lv~~tDGVGTKl~~A~~~~k~dTiG 81 (345)
T COG0150 2 TSLTYADAGVDIDAGNEAVERIKPAVKRTRRPEVMGGLGGFAGLFDLGQAYYKPVLVSGTDGVGTKLLLAEDAGKHDTIG 81 (345)
T ss_pred CcccHHhhCCCHhhHHHHHHHHHHHHHhhcCcccccCCcceeEEEEccCCCccceEEecCCCchHHHHHHHHhCCccccc
Confidence 46899999999999999999998764 38999999999987 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEE
Q 016548 130 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIV 209 (387)
Q Consensus 130 ~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v 209 (387)
+|+|||||||++|.||+|++|+|||+.++++++.++++++||+++|++.||+|+||||++||++|++++||++||++|++
T Consensus 82 ID~VAM~VNDlv~~GAePl~flDY~A~gk~~~~~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvv 161 (345)
T COG0150 82 IDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVV 161 (345)
T ss_pred cchheeecchhhhcCcchHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHhCCEEeccccccCCCcccCCceeeeeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCc
Q 016548 210 KKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGV 288 (387)
Q Consensus 210 ~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v 288 (387)
+++++|+++++++||+|++++|+|+|+|||||+||+++..+..+.+.+|+. .++++|+||+|||+|++++++++++..|
T Consensus 162 ek~~ii~g~~i~~GDviigl~SSG~HSNGySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL~PTrIYvk~vL~l~~~~~v 241 (345)
T COG0150 162 EKDEIIDGSKVKEGDVIIGLASSGLHSNGYSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDV 241 (345)
T ss_pred EccccccccccCCCCEEEEecCCCcCCCchHHHHHHHHhcCccccccCccccccCHHHHhcCCceeehHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999998777777777764 4689999999999999999999999999
Q ss_pred cEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC
Q 016548 289 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG 368 (387)
Q Consensus 289 ~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~ 368 (387)
|+|+|||+|||.+||+|+.+.+++++||..+||+|++|+|+++.++++.+||+|+||||.||+++|++++++++++.+++
T Consensus 242 kg~AHITGGG~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 242 KGMAHITGGGFVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred ceEEEecCCChhhhChhhcCccceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCeEEEEEEEcCCc
Q 016548 369 G-YEAYHIGEVVNGEG 383 (387)
Q Consensus 369 ~-~~~~vIG~V~~g~g 383 (387)
. +++|+||+|+++.+
T Consensus 322 ~g~~a~~iG~V~~~~~ 337 (345)
T COG0150 322 QGETAYVIGRVEAGEG 337 (345)
T ss_pred cCCceEEEEEEEeCCC
Confidence 8 99999999998743
No 2
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-81 Score=624.24 Aligned_cols=348 Identities=63% Similarity=1.038 Sum_probs=323.3
Q ss_pred cchhhhh----cccccccccccCCCCC--------C-CCCCCchhhhcCcCHHHHHHHHHHHHhhC-----CC----CCC
Q 016548 36 PFLSMAS----RRVSVNSCVLSMSGSG--------S-STSEGLTYKDAGVDIDAGSELVRRIAKMA-----PG----IGG 93 (387)
Q Consensus 36 ~~~~~~~----~~~~~~~~~~~~~~~~--------~-~~~~~~~y~~~gvdi~~~~~~v~~i~~~~-----~~----~Gd 93 (387)
++|+-|. .++.+.+.+..+.... . ++.+++||++||||||+|++||+|||++. || +|+
T Consensus 395 ~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ra~~~~~~st~sLTYkdSGV~id~Gn~lVqrIk~l~k~T~rpG~~~diGG 474 (788)
T KOG0237|consen 395 DDLESAAETAYKAVQVISFSGKFYRKDIAWRAFKNKDDSTPSLTYKDSGVDIDAGNELVQRIKPLVKGTRRPGADADIGG 474 (788)
T ss_pred chHHHHHHHHHHHheEEeeccccccchhhhhhcchhhcCCccccccccCccccchHHHHHHHHHhhhcccCCCccccccc
Confidence 5555554 4444555554444443 1 34678999999999999999999999987 44 999
Q ss_pred ceEEEec-----CCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHH
Q 016548 94 FGGLFPL-----GDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 168 (387)
Q Consensus 94 Daavi~~-----~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~ 168 (387)
|+++|++ +++.||.+|||+|||+++|++++.|+++|+|+||||+|||++.||+|++|+||+++++++....++++
T Consensus 475 FgglfdLk~ag~~d~~Lv~~tdGVGtKl~iA~~~~~hdtvG~DlvAm~vNDii~~gAePl~FLDYfa~gkLd~~va~~~v 554 (788)
T KOG0237|consen 475 FGGLFDLKQAGFKDPLLVSGTDGVGTKLKIAQETNIHDTVGIDLVAMNVNDIIVQGAEPLFFLDYFATGKLDVSVAEQVV 554 (788)
T ss_pred cceeeehhhcCCCCceEEEeccCccceeehhhhhCcccccceeeeeeehhhHhhcCCcceeehhhhhhcccchHHHHHHH
Confidence 9999985 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCC-CCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 169 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDG-KNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 169 ~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~-~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
+||+++|++.+|+|+||||++||++|.+++||++||++|.++++.+++. +.+++||+|++++|+|.|+|||||+||++.
T Consensus 555 ~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~~iLp~~~ei~~GDVllGL~SsGvHSNGfSLvrkil~ 634 (788)
T KOG0237|consen 555 KGIAEGCRQAGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERTDILPKLNEIVAGDVLLGLPSSGVHSNGFSLVRKILA 634 (788)
T ss_pred HHHHHHHhhccceeeccccccCCCCCCCCccccccceEeeeeccCcCCCccccccCcEEEeccccccccCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888887 559999999999999999999999999999
Q ss_pred hcCCcccCCCCCch-hHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHH
Q 016548 248 QSGLSLKDQLPSEN-TTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVF 326 (387)
Q Consensus 248 ~~~~~~~~~~p~~~-~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~ 326 (387)
+.+..|.+++||+. .+++++||.||++|+++++++++++.|++++|||+|||.+|++|++|++++++||.++|.+|++|
T Consensus 635 ~~~l~~~~~~P~~~~~tlGd~LL~pTkiYvk~ll~~i~~g~vkg~AHITGGGl~ENipRvlp~~l~~~id~~twe~p~vF 714 (788)
T KOG0237|consen 635 RSGLSYKDPLPWDSSKTLGDELLAPTKIYVKQLLPLIRKGGVKGLAHITGGGLTENIPRVLPDHLGAVIDADTWELPPVF 714 (788)
T ss_pred hcCCccCCCCCCCcccchhhhhccccEEehhhhHHHHHhcccceeeeecCCCccccchhhcccccceEEecccccCcHHH
Confidence 99999999999984 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCc
Q 016548 327 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEG 383 (387)
Q Consensus 327 ~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~g 383 (387)
+|+++.++++..||.||||||+|||++|+||+++++++.+++. +.+|+||+|+++++
T Consensus 715 ~Wl~~aG~v~~~em~RTfN~GiGmVlvVs~e~ve~v~kel~~~~e~~~~iG~vv~r~~ 772 (788)
T KOG0237|consen 715 KWLQQAGNVPDSEMARTFNCGIGMVLVVSPENVERVLKELTNHGEEAYRIGEVVNREG 772 (788)
T ss_pred HHHHHcCCCCHHHHHHHhccccceEEEEcHHHHHHHHHHHhhCCeEEEEEEeEeecCC
Confidence 9999999999999999999999999999999999999999988 89999999997764
No 3
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=100.00 E-value=1.7e-77 Score=594.87 Aligned_cols=334 Identities=85% Similarity=1.314 Sum_probs=308.8
Q ss_pred ccCCCCCCCCCCCchhhhcCcCHHHHHHHHHHHHhhCCCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHH
Q 016548 52 LSMSGSGSSTSEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGID 131 (387)
Q Consensus 52 ~~~~~~~~~~~~~~~y~~~gvdi~~~~~~v~~i~~~~~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~ 131 (387)
.+..++..+...++|||+|||||++++++|++|++..|++|+|||+|++++++||++||++++|+++++.+++++++||+
T Consensus 46 ~~~~~~~~~~~~~~~Y~~aGVdi~~~~~li~~i~~~~~giGdDaavi~~~~~~LV~ttD~vgtk~~~a~~~~~~~~iG~~ 125 (379)
T PLN02557 46 KAGRSNKDDSEEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPFGDSYLVAGTDGVGTKLKLAFETGIHDTIGID 125 (379)
T ss_pred hcccCCCCCccccCcHHHhCcCHHHHHHHHHHHHHhCCCCCCCeEEEecCCCEEEEEeCCCCCCchhhhhcCcHhhHHHH
Confidence 33333344567789999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcC
Q 016548 132 LVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKK 211 (387)
Q Consensus 132 aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~ 211 (387)
+|++|+|||++|||+|++|++++.|+++++++++++++||.++|+++||+++||||+++|++|.++++++++|++|.+++
T Consensus 126 aVa~nvnDIaamGA~P~~~l~~l~~~~l~~~~l~~i~~Gi~~a~~~~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~ 205 (379)
T PLN02557 126 LVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKK 205 (379)
T ss_pred HHHhHHHHHHHcCCChHHhheecccCCCCHHHHHHHHHHHHHHHHHhCCEEEeecceEccCcccCCceeEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEE
Q 016548 212 DSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGI 291 (387)
Q Consensus 212 ~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~ 291 (387)
++++++++++|||+|++++++|.|+|||+|+|+++++.+.++.+.+|....++++++++|+++|++.++++++++.||+|
T Consensus 206 ~~~i~~~~akpGD~Iigl~ssGiHsng~sl~r~~l~~~~~~~~~~~~~~~~~l~e~ll~pt~iyv~~vl~l~~~~~V~am 285 (379)
T PLN02557 206 DAVIDGKNIVAGDVLIGLPSSGVHSNGFSLVRRVLAKSGLSLKDQLPGASVTIGEALMAPTVIYVKQVLDIISKGGVKGI 285 (379)
T ss_pred ccccccccCCCCCEEEEecccccccchhhhhHHHHHhccccccccccccCccHHHHhhcchHHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999999999999998766555555555434579999999999999999998887889999
Q ss_pred ecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCCCC
Q 016548 292 AHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYE 371 (387)
Q Consensus 292 ~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~~~ 371 (387)
+|||+|||.++|+||++++++++||.++||+|++|+|+|+.++++|+||+++||||+||+++|++++++++++. ..++
T Consensus 286 ~diTgGGl~~~L~e~~~~g~g~~Id~~~~pv~~~f~~i~~~g~i~~~em~~tfN~GiGmv~~V~~~~a~~~l~~--~~~~ 363 (379)
T PLN02557 286 AHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMGIGMVLVVSPEAADRILEE--GAYP 363 (379)
T ss_pred EcCCcchHhhhhHHHhcCCeeEEEeCCCCCCCHHHHHHHHhCCCCHHHHHHhcCCcccEEEEECHHHHHHHHHh--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877 2378
Q ss_pred eEEEEEEEcCCceEEC
Q 016548 372 AYHIGEVVNGEGVSYS 387 (387)
Q Consensus 372 ~~vIG~V~~g~gv~~~ 387 (387)
+++||+|+++++|.|+
T Consensus 364 a~~IG~V~~~~~v~~~ 379 (379)
T PLN02557 364 AYRIGEVINGEGVVYV 379 (379)
T ss_pred eEEEEEEEcCCceEeC
Confidence 9999999999898874
No 4
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=100.00 E-value=8e-61 Score=472.91 Aligned_cols=317 Identities=56% Similarity=0.949 Sum_probs=283.2
Q ss_pred chhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecCC----ceEEEEeecCCCccccccccCChHHHHHH
Q 016548 65 LTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLGD----SYLVAGTDGVGTKLELAFETGIHDTIGID 131 (387)
Q Consensus 65 ~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~~----~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~ 131 (387)
+||+++|||+++.++|+++|++.. +++|||||++++++ +.|+++||+++++.+++..+.+++.+||+
T Consensus 1 ~~~~~~~~~~~~e~~li~~~~~~~~~~~~~~v~~g~GdDaav~~~~~~~~~~~l~~t~D~~g~~~~~~~~~~~~~~~G~~ 80 (332)
T TIGR00878 1 VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLGDKYKEPVLVSGTDGVGTKLLVAEAMNKHDTIGID 80 (332)
T ss_pred CCHHHhCcCHHHHHHHHHHHHHHHHhhCCCCcccCCCCCeEEEEcccccCCceEEEeccccccchHHHHHcCchHHHHHH
Confidence 589999999999999999997643 38999999999875 67999999999999998777788889999
Q ss_pred HHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcC
Q 016548 132 LVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKK 211 (387)
Q Consensus 132 aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~ 211 (387)
+|++|+|||+||||+|++++++|+++++++++++++++||.++|+++|++++||||+..|++|+++.+.+++|++|.+++
T Consensus 81 av~~n~sDiaa~Ga~P~~~~~~l~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGG~t~~~~~~~~~~~~~i~~t~iG~~~~ 160 (332)
T TIGR00878 81 LVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEK 160 (332)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCEEEceeeeECCCcccCCceEEEEEEEEEEcC
Confidence 99999999999999999999999888889999999999999999999999999999999999987678889999999998
Q ss_pred CCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCc-ccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccE
Q 016548 212 DSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLS-LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKG 290 (387)
Q Consensus 212 ~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~-~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a 290 (387)
++++.++++++||.|+++|++|.|++|++++++.+...... +.....+....+.+.+++|++.|.+.++.+++.+.+++
T Consensus 161 ~~~~~~~~a~~GD~i~ltg~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~p~~~~~~~~~~l~~~~~i~a 240 (332)
T TIGR00878 161 DEIITGEKVKPGDVLIGLGSSGIHSNGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRIYVKPILELIKEVEVHG 240 (332)
T ss_pred ccccCccCCCCCCEEEEECCchHHHHHHHHHHHHhhhccccccccccccccchHHHHHhhHhHHHHHHHHHHHhcCCceE
Confidence 88999999999999999999999999999988765422111 11111111246889999999888777888888788999
Q ss_pred EecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-
Q 016548 291 IAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG- 369 (387)
Q Consensus 291 ~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~- 369 (387)
|||||+|||+.+|+||+.+++|++|+.++||+++.++++++.++++|+|++++||+|.|||++|+|++++++++.+++.
T Consensus 241 ~~DiS~gGL~~~L~e~~~sg~g~~I~~~~ipi~~~~~~~~e~~~~~~~e~~~~~~~g~glli~v~~e~~~~~~~~l~~~g 320 (332)
T TIGR00878 241 LAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGVGFVVIVPEEEVDKALALLNARG 320 (332)
T ss_pred EEeCCCccHhhhHHHhccCCceEEEecCCCCCCHHHHHHHHCCCCChHHHHHHHhccCCEEEEECHHHHHHHHHHHHhcC
Confidence 9999999999999999878999999999999999999999999999999999999998899999999999999999887
Q ss_pred CCeEEEEEEEcC
Q 016548 370 YEAYHIGEVVNG 381 (387)
Q Consensus 370 ~~~~vIG~V~~g 381 (387)
+++++||+|+++
T Consensus 321 i~a~vIG~V~~~ 332 (332)
T TIGR00878 321 EKAWVIGEVKKG 332 (332)
T ss_pred CCcEEEEEEeCC
Confidence 899999999864
No 5
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=100.00 E-value=2.3e-59 Score=461.77 Aligned_cols=313 Identities=58% Similarity=1.008 Sum_probs=277.2
Q ss_pred chhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecC----CceEEEEeecCCCccccccccCChHHHHHH
Q 016548 65 LTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG----DSYLVAGTDGVGTKLELAFETGIHDTIGID 131 (387)
Q Consensus 65 ~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~----~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~ 131 (387)
+||+++|||+++.++++++|++.. +|+|||||+++.. ++.|+++||++++++++.+.+++|+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~giGdDaav~~~~~~~~~~~lv~t~D~~~~~~~~~~~~~~~~~iG~~ 80 (327)
T PRK05385 1 LTYKDAGVDIEAGNELVERIKPAVKRTFRPEVLGGLGGFGGLFDLPKGYKEPVLVSGTDGVGTKLKLAIDLGKHDTIGID 80 (327)
T ss_pred CCHHHhCcCHHHHHHHHHHHHHHHHhcCCCccccCCcCccEEEecccccCCcceeeccccccchhHHHHHhCCHhhHHHH
Confidence 589999999999999999998764 3889999999974 567999999999998887777788999999
Q ss_pred HHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcC
Q 016548 132 LVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKK 211 (387)
Q Consensus 132 aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~ 211 (387)
+|++|+|||+||||+|++++++|+++++++++++++++||.++|+++|++++||||...|.+|.++++.+++|++|.+++
T Consensus 81 av~~n~sDIaamGa~P~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~~~~~~~i~~t~~G~~~~ 160 (327)
T PRK05385 81 LVAMCVNDLLVQGAEPLFFLDYIATGKLDPEVAAQVVKGIAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEK 160 (327)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCeEeCccceECCCcccCCCeeEEEEEEEEEec
Confidence 99999999999999999999999888889999999999999999999999999999998887744456789999999998
Q ss_pred CCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEE
Q 016548 212 DSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGI 291 (387)
Q Consensus 212 ~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~ 291 (387)
++++.|++++|||.|++++.+|.+++|+.++++.+++....+.. .......+.+.+++|++.+.+....+.+.+.+++|
T Consensus 161 ~~~~~r~~a~~GD~I~~tg~~G~~g~g~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~l~p~~~~~~~~~~l~~~~~v~a~ 239 (327)
T PRK05385 161 DKIIDGSKVKEGDVLIGLASSGLHSNGYSLVRKILEVLDLDDTL-PELDGKTLGEELLEPTRIYVKPVLALLKEVDVKGM 239 (327)
T ss_pred ccccCcCCCCCCCEEEEeCCcchhhhHHHHHHHHHHhccccccc-cccccchHHHHHhhhhHHHHHHHHHHHhcCCceEE
Confidence 88999999999999999999999999988877766543222211 11112358889999998887777777777789999
Q ss_pred ecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-C
Q 016548 292 AHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-Y 370 (387)
Q Consensus 292 ~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~ 370 (387)
+|||+|||+.+|+||++|++|++||.++||+++.++++++.++++|++++++|++|++||+++|+++++++++.+++. .
T Consensus 240 ~DiSdgGL~~~L~eia~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~G~~Ll~tv~~~~~~~l~~~l~~~g~ 319 (327)
T PRK05385 240 AHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMGIGMVLIVPPEDADAALALLEAAGE 319 (327)
T ss_pred EeCCCchHhhhhHHhcCCCceEEEecCCCCCCHHHHHHHHcCCCCHHHHHHHHhcCCcEEEEECHHHHHHHHHHHHhcCC
Confidence 999999999999999888999999999999999999999999999999999999998899999999999999998877 8
Q ss_pred CeEEEEEE
Q 016548 371 EAYHIGEV 378 (387)
Q Consensus 371 ~~~vIG~V 378 (387)
++++||+|
T Consensus 320 ~~~~IG~v 327 (327)
T PRK05385 320 DAWVIGRV 327 (327)
T ss_pred CceEEEEC
Confidence 99999986
No 6
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=3.6e-53 Score=412.44 Aligned_cols=290 Identities=63% Similarity=1.071 Sum_probs=256.8
Q ss_pred CCCCceEEEecC-----CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHH
Q 016548 90 GIGGFGGLFPLG-----DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLA 164 (387)
Q Consensus 90 ~~GdDaavi~~~-----~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~ 164 (387)
.+|.||++++.+ ++.|+++||++++++++++.++.++++||++|++|+|||+||||+|++++++|++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~~~~~l~~~~~~~~~l 81 (297)
T cd02196 2 GIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDYIATGKLDPEVA 81 (297)
T ss_pred CCCceeEEEeccccCCCCcEEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeHHHHhhhhcCCCCHHHH
Confidence 479999999986 478999999999999999999999999999999999999999999999999998777899999
Q ss_pred HHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHH
Q 016548 165 EKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRR 244 (387)
Q Consensus 165 ~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~ 244 (387)
+++++||.++|+++|++++||||+.++++|.++++.+++|++|.+++++++.++++++||.|++++++|.+++|+.++++
T Consensus 82 ~~~~~Gi~~~~~~~gi~ivGGdt~~~~~~~~~~~~~isvt~iG~~~~~~~~~~~~a~~Gd~I~~tg~~G~~~~g~~~~~~ 161 (297)
T cd02196 82 AEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDGSKIKPGDVLIGLPSSGLHSNGYSLVRK 161 (297)
T ss_pred HHHHHHHHHHHHHcCCeEeeecceEccCcccCCceeEEEEEEEEEeccccccccCCCCCCEEEEccCcchhhhHHHHHHH
Confidence 99999999999999999999999999988855567799999999998889999999999999999999999999988877
Q ss_pred HHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcH
Q 016548 245 VLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPA 324 (387)
Q Consensus 245 i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~ 324 (387)
.+......+.+.-+.....+.+++++|.+.+.+.+..+++...+++|||||+|||+.+|+||+.+++|++||.++||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~e~a~~~~g~~Id~~~iPv~~ 241 (297)
T cd02196 162 ILFEEGLDYDDPEPGLGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPEGLGAVIDLGSWEIPP 241 (297)
T ss_pred HHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCchhhccHhhccCCceEEEecCCCCCCH
Confidence 65432211111000112358899999987777777777766789999999999999999999867999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEE
Q 016548 325 VFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVV 379 (387)
Q Consensus 325 ~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~ 379 (387)
.++++++.++++|++++++|++|+|||+++++++++++++.+++. +++++||+|+
T Consensus 242 ~~~~~~e~~~~~p~~~~~~~~~g~gll~~v~~~~~~~~~~~l~~~gi~a~~IG~v~ 297 (297)
T cd02196 242 IFKWIQKAGNVSEEEMYRTFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297 (297)
T ss_pred HHHHHHHhCCCCHHHHHHHHhCCCCEEEEECHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 999999999999999999999998899999999999999999887 8999999985
No 7
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=100.00 E-value=7.5e-47 Score=365.70 Aligned_cols=283 Identities=23% Similarity=0.307 Sum_probs=243.6
Q ss_pred HHHHHHHHHhh------CCCCCCceEEEecCCc-eEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHH
Q 016548 77 GSELVRRIAKM------APGIGGFGGLFPLGDS-YLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 149 (387)
Q Consensus 77 ~~~~v~~i~~~------~~~~GdDaavi~~~~~-~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~ 149 (387)
..++|+++.+. ..++|||||+++.++. .||+|||.+..++||.+.+. |+++||+++++|+|||+||||+|.+
T Consensus 5 Ef~lI~~~~~~~~~~~~~~~~GDDaA~v~~~~~~~lvvttD~lv~~~hF~~~~~-p~d~G~Ka~a~NlSDlAAMGa~P~~ 83 (317)
T COG0611 5 EFELIKRYFKRRQREDVVLGIGDDAALVDAPEGQRLVVTTDMLVEGTHFPPDMT-PEDLGWKALAVNLSDLAAMGARPKA 83 (317)
T ss_pred HHHHHHHHHhhcCcccccccCCCceEEEecCCCceEEEEecccccccccCCCCC-HHHHHHHHHHHHHHHHHHcCCCchh
Confidence 35677777655 2589999999998855 69999999999999999987 8999999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEE
Q 016548 150 FLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIG 228 (387)
Q Consensus 150 ~ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~ 228 (387)
|+..|. |++.++++++++++||.++|+.|++++|||||.+. +.++++|++|.+++++.+.|+++||||.|++
T Consensus 84 ~~lsl~lP~~~d~~~~~~~~~Gi~e~~~~y~~~lIGGDt~~~-------~l~is~t~iG~~~~~~~l~R~gAkpGD~v~v 156 (317)
T COG0611 84 FLLSLGLPPDLDEEWLEALADGIFEAAKKYGVKLIGGDTNRG-------PLSISVTAIGVLPKGRALLRSGAKPGDLVAV 156 (317)
T ss_pred heeeeeCCCCCCHHHHHHHHHHHHHHHHHcCCeEeccccCCC-------ceEEEEEEEEecCCCchhhccCCCCCCEEEE
Confidence 999884 77999999999999999999999999999999974 3679999999999999999999999999999
Q ss_pred eCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC
Q 016548 229 LPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP 308 (387)
Q Consensus 229 ~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~ 308 (387)
||.+|.+.+|+.++.+ .. -++....+.+.+++|++ .++..+.+.. .+++|+||||| |+.+|.+|+.
T Consensus 157 tG~lG~saagl~ll~~---~~-------~~~~~~~l~~r~~~P~P-rv~~g~~l~~--~a~aa~DiSDG-L~~dL~~i~~ 222 (317)
T COG0611 157 TGTLGRSAAGLELLLN---VL-------GPEDEEELIERHLRPTP-RVELGLALAK--LASAAMDISDG-LAADLGHIAR 222 (317)
T ss_pred cCCCchhHHHHHHHhc---cc-------CcchhHHHHHHhcCCCC-ChhHHHHHHH--HHHHheecchh-HHHHHHHHHH
Confidence 9999999999988754 10 01113478899999985 4555555443 68899999998 9999999997
Q ss_pred -CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCCCCeEEEEEEEcCCc
Q 016548 309 -KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEG 383 (387)
Q Consensus 309 -s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~~~~~vIG~V~~g~g 383 (387)
|+||++|+.+.+|+.+.........+ ++.++....++.|++||++|++..+++...++..- +++||+|+++.|
T Consensus 223 aS~vg~~I~~~~lp~~~~~~~~~~~~~-~~~~~aL~gGEDyELvft~p~~~~~~~~~~~~~~~-~~~IG~v~~~~g 296 (317)
T COG0611 223 ASGVGIVIDEDLLPLSDAVLEALDELG-DPLEWALSGGEDYELVFTVPEENREALLDALRSLG-VTIIGRVTEGEG 296 (317)
T ss_pred HcCCeEEEEeccCCCcHHHHHHHhccC-CHHHHHhccCCceEEEEEeCchhHHHHHHHHHhcC-ceEEEEEeecCC
Confidence 99999999999997777666666555 89999888888899999999999999888875433 899999997666
No 8
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=100.00 E-value=6.2e-46 Score=365.16 Aligned_cols=284 Identities=23% Similarity=0.298 Sum_probs=226.4
Q ss_pred HHHHHHHHhh-----CCCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 016548 78 SELVRRIAKM-----APGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLD 152 (387)
Q Consensus 78 ~~~v~~i~~~-----~~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld 152 (387)
+.+|+++.+. ..++||||||+++++..||++||++.++.|+. +++++||++|++|+|||+||||+|+++++
T Consensus 2 ~~~i~~~~~~~~~~~~~~~gdDaavi~~~~~~lv~ttD~~~~~p~~~----~~~~iG~~av~~n~sDiaamGa~P~~~~~ 77 (320)
T TIGR02124 2 QQLIQELFLKAFGNEILAAMEDAAVLELSGGRLAFSTDSFVVDPLFF----PGGDIGKLAVCGTVNDVAVSGAKPLYLSC 77 (320)
T ss_pred HHHHHHHHHHhcCCcccCCCCceEEEeeCCCeEEEEecCCccCCccc----CcccHHHHHHHHHHHHHHHcCCcchhhEE
Confidence 3566666442 24889999999998888999999998776552 23589999999999999999999999999
Q ss_pred hhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCC
Q 016548 153 YFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS 231 (387)
Q Consensus 153 ~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs 231 (387)
+|. |.+.++++++++++||.++|++||++++||||+.++.-. ..++.+++|++|++++++++.+++++|||.|+++|+
T Consensus 78 ~l~lp~~~~~~~l~~~~~Gi~~a~~~~gi~ivGGdt~~~~~~~-~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~I~ltg~ 156 (320)
T TIGR02124 78 GFILEEGFPIEDLERIVKSMAEAARKAGVKIVTGDTKVVEKGK-ADGIFINTTGIGVIPSGIPISAHNLQPGDKIIVSGT 156 (320)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEeeeeEEccCCC-CCcEEEEEEEEEEEcCCccccccCCCCCCEEEEeCC
Confidence 985 667789999999999999999999999999999765211 123568899999999888999999999999999999
Q ss_pred CchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC-CccEEecCCCchHhchHhhhcC-C
Q 016548 232 SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG-GVKGIAHITGGGFTDNIPRVFP-K 309 (387)
Q Consensus 232 ~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~-~v~a~~DIT~GGL~~~L~~~~~-s 309 (387)
+|.++.++.+.+ .+..+...+. ..++|.. +....+.+.+ .+++|||||+|||+.+|+||+. +
T Consensus 157 ~G~~g~~l~~~~-----~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~v~a~~DiSdgGL~~~L~ela~~s 220 (320)
T TIGR02124 157 IGDHGAAILAVR-----EGLGFETNLE--------SDCAPLN---GLVETLLNAGPAVHAMRDATRGGLAAVLNEWAQAS 220 (320)
T ss_pred ccHHHHHHHHhh-----cccCCCccch--------hhhhhhH---HHHHHHHhccCCceEEECCCCccHHHHHHHHHHHc
Confidence 999877654321 1111211111 1112211 1122333333 5899999999999999999986 9
Q ss_pred CceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC--C-CCeEEEEEEEcCCc--e
Q 016548 310 GLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG--G-YEAYHIGEVVNGEG--V 384 (387)
Q Consensus 310 ~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~--~-~~~~vIG~V~~g~g--v 384 (387)
++|++|+.++||+++.++++++.++++|+++ ++.| ++|++++|++++++++.+++ . +++++||+|+++++ +
T Consensus 221 ~~g~~I~~~~ipi~~~~~~~~~~~~~~~~~~---~~~G-~ll~~v~~~~~~~~~~~~~~~~~gi~~~~IG~v~~~~~~~v 296 (320)
T TIGR02124 221 GVGIVIEEEKIPVKEEVKGACELLGLDPLYL---ANEG-KLVLAVPPEAAEKVLEILKSHPYGKDAAIIGEVVERKEGRV 296 (320)
T ss_pred CCeEEEecccCCCCHHHHHHHHHhCCCHHHH---hcCC-cEEEEECHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCEE
Confidence 9999999999999999999999988888644 5666 59999999999999998887 4 88999999998766 5
Q ss_pred EE
Q 016548 385 SY 386 (387)
Q Consensus 385 ~~ 386 (387)
++
T Consensus 297 ~~ 298 (320)
T TIGR02124 297 VL 298 (320)
T ss_pred EE
Confidence 54
No 9
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=100.00 E-value=1.1e-45 Score=362.82 Aligned_cols=286 Identities=23% Similarity=0.337 Sum_probs=238.4
Q ss_pred HHHHHHHHhhC-------CCCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHH
Q 016548 78 SELVRRIAKMA-------PGIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 149 (387)
Q Consensus 78 ~~~v~~i~~~~-------~~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~ 149 (387)
+++++++.... .++|||||++++++ ..|++++|+++++.||...+ +|+++||++|++|+|||+||||+|++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~g~gdDaavi~~~~~~~lvis~D~~~~~~~~~~~~-~p~~~G~~av~~~~sDiaa~Ga~P~~ 81 (317)
T TIGR01379 3 FELIARLLRRLVQDPDVALGIGDDAALVSAPEGRDLVLTTDTLVEGVHFPPDT-TPEDLGWKAVAVNLSDLAAMGATPKW 81 (317)
T ss_pred HHHHHHHHhhccCCCCcccCCCCcEEEEecCCCCeEEEEeccccCCcCCCCCC-CHHHHHHHHHHHHHHHHHHcCCcccE
Confidence 46677765411 37899999999974 67999999999999998876 78899999999999999999999999
Q ss_pred HHHhh-cCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEE
Q 016548 150 FLDYF-ATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIG 228 (387)
Q Consensus 150 ~ld~l-~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~ 228 (387)
+++++ .|.++++++++++++||.++|+++|++++||||+.++ ++.+++|++|.+++++++.+.++++||.|++
T Consensus 82 ~~~~~~~P~~~~~~~l~~i~~Gi~~a~~~~g~~ivGG~t~~~~------~~~i~vt~iG~~~~~~~~~~~~a~~Gd~I~l 155 (317)
T TIGR01379 82 FLLSLGLPSDLDEAWLEAFYDGLFECAKQYGVPLVGGDTVSSP------ELVVTVTAIGEAPKGRALLRSGAKPGDLVFV 155 (317)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEECccCCCCC------CcEEEEEEEEEeCCCCceecCCCCCCCEEEE
Confidence 99877 4777889999999999999999999999999999765 3578999999998888899999999999999
Q ss_pred eCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC
Q 016548 229 LPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP 308 (387)
Q Consensus 229 ~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~ 308 (387)
+|+.|.+++|+.++++. ....+........+.+++|... ++..+.+.+ .+++|||||+| |+.+|++|+.
T Consensus 156 tg~~G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~-~~~~~~l~~--~v~a~~DvS~G-L~~~l~ema~ 224 (317)
T TIGR01379 156 TGTLGDSAAGLALLLKG-------KKEPDEEDDEELLQRHLRPEPR-VEEGLALAG--YANAAIDVSDG-LASDLGHIAE 224 (317)
T ss_pred cCchhHHHHHHHHHhcC-------CccCcchhHHHHHHHhcCCCCh-HHHHHHHhh--hcceeEEchHh-HHHHHHHHHH
Confidence 99999999987654321 1111111122345677777643 344444433 69999999985 9999999996
Q ss_pred -CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCCCCeEEEEEEEcCCceE
Q 016548 309 -KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVS 385 (387)
Q Consensus 309 -s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~~~~~vIG~V~~g~gv~ 385 (387)
+++|++|+.+++|+++.+.++++ +++|+++...+++.++||+++++++.+++.+.+++ ++++||+|++++++.
T Consensus 225 ~sg~g~~i~~~~ipv~~~~~~~~~--~~~~~~~~~~~ge~~~ll~~v~~~~~~~~~~~~~~--~~~~IG~v~~~~~~~ 298 (317)
T TIGR01379 225 ASGVGIVIDLDRLPLSSELAAWAE--GKDPLEWALSGGEDYELVFTVPPERREALLDAAKG--PLTRIGRVTEGEGVV 298 (317)
T ss_pred HcCCcEEEehhcCCCCHHHHHHhc--CCCHHHHHhcCCcceeEEEEeCHHHHHHHHhhccC--CceEEEEEEcCCceE
Confidence 99999999999999999999998 88999988788888889999999999999888764 899999999987743
No 10
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=100.00 E-value=1.7e-45 Score=357.31 Aligned_cols=279 Identities=22% Similarity=0.280 Sum_probs=231.7
Q ss_pred HHHHHHHHhhC-------CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHH
Q 016548 78 SELVRRIAKMA-------PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFF 150 (387)
Q Consensus 78 ~~~v~~i~~~~-------~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ 150 (387)
+++|++|.+.. +++|||||+++.++..||++||+++++.||...+ +|+++||++|++|+|||+||||+|+++
T Consensus 3 ~~li~~~~~~~~~~~~~~~~~gdDaavi~~~~~~lv~t~D~~~~~~~f~~~~-~p~~~G~~av~~~~sDi~a~Ga~P~~~ 81 (291)
T cd02194 3 FELIDRLFKRLGAGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDT-TPEDIGWKALAVNLSDLAAMGARPLGF 81 (291)
T ss_pred HHHHHHHHhhcCCCCccCCCCCCCEEEecCCCCeEEEEecccccccCCCCCC-CHHHHHHHHHHHHHHHHHHcCCcccee
Confidence 57888876543 4889999999966788999999999999998887 789999999999999999999999999
Q ss_pred HHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEe
Q 016548 151 LDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGL 229 (387)
Q Consensus 151 ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~ 229 (387)
+++++ |.+.++++++++++||.++|+++|++++||||+.++ ...+++|++|.+++.+++.+.++++||.|+++
T Consensus 82 ~~~l~~p~~~~~~~l~~i~~Gi~~a~~~~g~~liGGdt~~~~------~~~i~vt~iG~~~~~~~~~~~~a~~GD~I~lt 155 (291)
T cd02194 82 LLSLGLPPDTDEEWLEEFYRGLAEAADRYGVPLVGGDTTSGS------ELVISVTALGEVEKGKPLRRSGAKPGDLLYVT 155 (291)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEcccCCCCC------CeEEEEEEEEecCCCCceecCCCCCCCEEEEe
Confidence 99886 445689999999999999999999999999999764 35789999999988788999999999999999
Q ss_pred CCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-
Q 016548 230 PSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP- 308 (387)
Q Consensus 230 gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~- 308 (387)
|++|.+.+|+.++++. ... .+.......+.+++|.. .++..+.+.+ ..+++|||||+| |+.+|+||+.
T Consensus 156 g~~G~~~~g~~~~~~~-----~~~---~~~~~~~~~~~~~~p~~-~~~~~~~l~~-~~v~a~~DiSdG-L~~~l~ela~~ 224 (291)
T cd02194 156 GTLGDAAAGLALLLGG-----LKL---PEELYEELIERHLRPEP-RLELGRALAE-GLATAMIDISDG-LLADLGHIAEA 224 (291)
T ss_pred CCccHHHHHHHHHhCC-----CCC---ChhhHHHHHHHhcCCCC-cHHHHHHHHh-CCCeEEEEchHh-HHHHHHHHHHH
Confidence 9999999998665431 111 01112356677888874 3445554443 679999999995 9999999996
Q ss_pred CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEE
Q 016548 309 KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVV 379 (387)
Q Consensus 309 s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~ 379 (387)
+++|++|+.++||+++.+.+ +..+.+|+++....++.+++|++++++++ .+.+++. .++++||+|+
T Consensus 225 s~~g~~i~~~~ipi~~~~~~--~~~~~~p~~~~~~gGedy~ll~~v~~~~~---~~~~~~~~~~~~~IG~v~ 291 (291)
T cd02194 225 SGVGAVIDLDKLPLSPALRA--AELGEDALELALSGGEDYELLFTVPPENA---EAAAAKLGVPVTVIGRVT 291 (291)
T ss_pred cCCeEEEecccCCCCHHHHh--hhcCCCHHHHHhcCCcceEEEEEechhHh---HHHHhhcCCCceEEEEEC
Confidence 89999999999999999988 77789999886666666789999999876 3344444 8999999984
No 11
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=7.7e-45 Score=353.27 Aligned_cols=265 Identities=23% Similarity=0.314 Sum_probs=213.6
Q ss_pred CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHH
Q 016548 89 PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKV 167 (387)
Q Consensus 89 ~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i 167 (387)
.++|||||+++.++..++++||++....||. .++++||++|++|+|||+||||+|++++++|+ |++.+.++++++
T Consensus 23 ~~~~DDaavi~~~~~~lv~ttD~~~~~~~~~----~~~~iG~~av~~~~sDiaamGa~P~~~~~~l~lp~~~~~~~l~~~ 98 (293)
T cd02197 23 LEVLEDAAALLVGGGRLAFTTDSFVVSPLFF----PGGDIGKLAVCGTVNDLAMMGAKPLYLSLGFILEEGFPLEDLERI 98 (293)
T ss_pred cccCCceEEEecCCceEEEEecCccccCccc----CchhHHHHHHHhhHHHHHHcCCcchhheEEEECCCCCCHHHHHHH
Confidence 4789999999998889999999997776652 23689999999999999999999999999986 557789999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++||.++|+++|++++||||+.++... .++..+++|++|.+++.+.+.|++++|||.|+++|++|.++.++.+.+
T Consensus 99 ~~Gi~~~~~~~g~~ivGGdt~~~~~~~-~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~i~vtG~~G~~~~~l~~~~---- 173 (293)
T cd02197 99 VKSMAEAAREAGVKIVTGDTKVVPKGK-ADGIFINTTGIGVIPRGVIISPSNIRPGDKIIVSGTIGDHGAAILAAR---- 173 (293)
T ss_pred HHHHHHHHHHcCCEEEeceeEeccCCc-cCceEEEEEEEEEEcCCccccccCCCCCCEEEEeCCccHHHHHHHhcc----
Confidence 999999999999999999999876321 124568899999999888888999999999999999999876542221
Q ss_pred hcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHh-CCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHH
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIST-GGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~-~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~ 325 (387)
.+..+... .+..++|.. +....+++. ..+++|+|||+|||+.+|+||+. |++|++|+.+++|+++.
T Consensus 174 -~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~v~a~~DiSdgGL~~~L~~~a~~sg~g~~I~~~~iP~~~~ 241 (293)
T cd02197 174 -EGLGFETD--------IESDCAPLN---GLVEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEIEEEAIPVREE 241 (293)
T ss_pred -cCCCcchh--------hhhhhhhhh---HHHHHHHhcCCCceEEEcCCcchHHHHHHHHHHHcCCeEEEeeccCCCCHH
Confidence 11111111 111122221 122233333 36899999999999999999996 99999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC---CCCeEEEEEE
Q 016548 326 FKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG---GYEAYHIGEV 378 (387)
Q Consensus 326 ~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~---~~~~~vIG~V 378 (387)
+.++++.++++|+++ .++| +||+++||++++++++.+++ .+++++||+|
T Consensus 242 ~~~~~~~~~~~~~~~---~~~G-~ll~tv~~~~~~~i~~~l~~~~~gi~~~vIG~v 293 (293)
T cd02197 242 VRGACEMLGLDPLYL---ANEG-KFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV 293 (293)
T ss_pred HHHHHHHhCcCHHHH---hcCC-cEEEEECHHHHHHHHHHHHhCCCCCCeEEEEeC
Confidence 999999999998765 3556 59999999999999988864 3689999986
No 12
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=100.00 E-value=1.7e-44 Score=358.67 Aligned_cols=273 Identities=21% Similarity=0.226 Sum_probs=218.4
Q ss_pred CCCCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHh-hc-CCCCCHHHHH
Q 016548 89 PGIGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDY-FA-TSHLEVDLAE 165 (387)
Q Consensus 89 ~~~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~-l~-~~~~~~e~~~ 165 (387)
|++|||||+++.+ +..||+|||.+. +.+.+|+.+||++|+.|+|||+||||+|+++++. +. +++.++++++
T Consensus 47 ~~~gDDaAvi~~~~~~~lv~ttD~~~------p~~~~p~~~G~~av~~~lsDiaamGa~P~~~l~~~~~~~~~~~~~~l~ 120 (347)
T TIGR00476 47 AVMGDDAVIYLRHNGLSLVQTTDYIT------PIVDDPYMMGRIAAANALSDIYAMGGTPIDAMLILLGVSNKLTIEVMR 120 (347)
T ss_pred CCCCCCeEEEEecCCeEEEEEeccCC------CCccCHHHHHHHHHHHHHHhhhhcCchHHHHHhhccCCCCCCCHHHHH
Confidence 3489999999986 557999999973 2356788999999999999999999999998864 44 5578999999
Q ss_pred HHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHH
Q 016548 166 KVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 245 (387)
Q Consensus 166 ~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i 245 (387)
++++||.++|+++|++|+||||.++|. ..+++|++|.+++++++.+++++|||.|++|+++|.+.. .+.++.
T Consensus 121 ~i~~Gi~~~~~~~g~~lvGGdT~~~~~------~~i~~t~~G~~~~~~~i~~~~ak~GD~Iiltg~lG~~~~--~~~~~~ 192 (347)
T TIGR00476 121 EVIQGFKDACREAGTSLTGGHTILNPW------PVFGGAVTGVCPEEEVITPSGAQVGDVLILTKPLGTQVA--VAVHKW 192 (347)
T ss_pred HHHHHHHHHHHHcCCCeEeeeeecCCc------CEEEEEEEEEECccceecCCCCCCCCEEEEECCccHHHH--HHHHHH
Confidence 999999999999999999999998762 358899999999889999999999999999999999652 223333
Q ss_pred Hhhc-CCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCc
Q 016548 246 LAQS-GLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVP 323 (387)
Q Consensus 246 ~~~~-~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~ 323 (387)
+++. ...+.+ +.....+.+.+..+++++ +....+..+..+++|+|||+|||+++|+||+. |++|++||.++||++
T Consensus 193 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~a~~DiT~gGL~~~L~~ia~~sg~g~~I~~~~iPi~ 269 (347)
T TIGR00476 193 LDIPKDLSITK--EEVELAINEAIENMARLN-RKAAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPVL 269 (347)
T ss_pred hhcccccccCc--HHHHHHHHHHHHHHhHHH-HHHHHHHhhCCceEEEeccCccHHHHHHHHHhcCCCeEEEEeCCCCCc
Confidence 3211 001110 000112344444444444 23333344457999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHhcCCCe---------------------eEEEEEeccCHHHHHHhhcCC-CCeEEEEEE
Q 016548 324 AVFKWIQQAGRIEDSEMRRTFNMGI---------------------GMVLVVSKETSHTILEGGRGG-YEAYHIGEV 378 (387)
Q Consensus 324 ~~~~~i~~~~~i~~~e~~~~fn~G~---------------------gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V 378 (387)
+.++++++.++.+..+|+.+||+|. +++++++++.+.++++.+++. +++++||+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~g~~l~~v~~~~~~~~~~~~~~~~~~~~~ig~v 346 (347)
T TIGR00476 270 AKMEELSKLCGNPFGLMHGTCPEGGGLLSCLPREKAALLCDPIKSGGYLFGVQAEIIGIVEKTATERIIDKPRIGEV 346 (347)
T ss_pred hhHHHHHHcCCCChHHHhhhhhccCCcccCCCHHHHHHhcCchhccCcccccCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 9999999999999999999999996 456788888888888888877 889999997
No 13
>PRK00943 selenophosphate synthetase; Provisional
Probab=100.00 E-value=1.7e-44 Score=358.53 Aligned_cols=268 Identities=20% Similarity=0.237 Sum_probs=210.2
Q ss_pred CCCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCC-CCHHHHH
Q 016548 89 PGIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSH-LEVDLAE 165 (387)
Q Consensus 89 ~~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~-~~~e~~~ 165 (387)
|+.|||||++++++ ..+|+++|++. +.+.+|+.+||++|+.|+|||+||||+|+++++++. |.+ .++++++
T Consensus 46 ~~~gdDaavi~~~~~~~lv~t~D~~~------p~~~~p~~~G~~Av~~~~sDiaAmGa~P~~~l~~l~lp~~~~~~~~l~ 119 (347)
T PRK00943 46 NETRDDAAVYDLNDGTGIISTTDFFM------PIVDDPFDFGRIAATNAISDIYAMGGKPIMAIAILGWPINKLPPEVAR 119 (347)
T ss_pred CCCCCceEEEEeCCCcEEEEEcccCC------CCCCCHHHHHHHHHHHHhhHhhccCccHHhHhheeecCcccCcHHHHH
Confidence 46689999999874 56999999862 235678899999999999999999999999999885 443 7899999
Q ss_pred HHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHH
Q 016548 166 KVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 245 (387)
Q Consensus 166 ~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i 245 (387)
++++||.++|+++|++|+||||.++|. ..+++|++|.+++++++.+++++|||.|++++++|.+..++ .++
T Consensus 120 ~i~~Gi~~~~~~~gv~lvGGdT~~~~~------~~i~~t~~G~~~~~~~l~~~~ak~GD~Iivtg~iG~~~~~~--~~~- 190 (347)
T PRK00943 120 EVLEGGRAACRQAGIPLAGGHSIDAPE------PIFGLAVTGVVPPERVKRNATAQAGDKLFLTKPLGIGILTT--AEK- 190 (347)
T ss_pred HHHHHHHHHHHHcCCceecccccCCCC------ceEEEEEEEEEcCCceeeCCCCCCCCEEEEeCCccHHHHHH--HHH-
Confidence 999999999999999999999987652 24788999999998999999999999999999999975433 221
Q ss_pred HhhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCc
Q 016548 246 LAQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVP 323 (387)
Q Consensus 246 ~~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~ 323 (387)
.. . +... .....+.+.+ +.+....+.....+|+|+|||+|||+++|+||+. |++|++||.++||++
T Consensus 191 --~~--~----~~~~~~~~~~~~~~~----l~~~~~~l~~~~~v~a~~DiT~gGL~~~L~ela~~s~~g~~Id~d~iPi~ 258 (347)
T PRK00943 191 --KS--K----LKPEHYGLAIEAMCQ----LNRPGADFAKLPGVHAMTDVTGFGLLGHLLEMCQGAGLTARVDYAAVPLL 258 (347)
T ss_pred --hc--C----CCHHHHHHHHHHHHH----hhhHHHHHhccCCCeEEEecCCchHHHHHHHHHHhcCCeEEEecccCCCC
Confidence 11 1 1111 0111111111 1111222333357999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhCC------------------CCHHH--HHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCC
Q 016548 324 AVFKWIQQAGR------------------IEDSE--MRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGE 382 (387)
Q Consensus 324 ~~~~~i~~~~~------------------i~~~e--~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~ 382 (387)
+.++++++.+. ++|++ ++..++++.|||++|||++++++++.+++. +++++||+|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGll~~v~~~~a~~v~~~l~~~g~~a~vIG~V~~~~ 338 (347)
T PRK00943 259 PGVEEYIAQGCVPGGTGRNFASYGHLIGELPDEQRALLCDPQTSGGLLVAVAPEAEAEVLAIAAEHGIELAAIGELVEAR 338 (347)
T ss_pred hhHHHHHHcCCCCchhhhHHHHhhccccccCHHHHhhccCcccCccEEEEeCHHHHHHHHHHHHhcCCCeEEEEEEEcCC
Confidence 99999998643 44543 111225666899999999999999999887 9999999999775
Q ss_pred c
Q 016548 383 G 383 (387)
Q Consensus 383 g 383 (387)
+
T Consensus 339 ~ 339 (347)
T PRK00943 339 G 339 (347)
T ss_pred C
Confidence 3
No 14
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00 E-value=2.4e-44 Score=353.51 Aligned_cols=286 Identities=21% Similarity=0.301 Sum_probs=238.0
Q ss_pred HHHHHHHHhhC-----CCCCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHH
Q 016548 78 SELVRRIAKMA-----PGIGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFL 151 (387)
Q Consensus 78 ~~~v~~i~~~~-----~~~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~l 151 (387)
+++|+++.+.. +++|||||+++++ +..||++||.+..+.|+.+.+.+|+++||++|++|+|||+||||+|++++
T Consensus 6 ~~~i~~~~~~~~~~~~~~~gdDaavi~~~~~~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~~~~ 85 (318)
T PRK05731 6 FDLIARLFARRPSSRELGIGDDAALLGPPPGQRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAAFL 85 (318)
T ss_pred HHHHHHHHhhCCCccCCCCCCcEEEeccCCCCeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 67787776533 4889999999987 67899999999999999887788999999999999999999999999999
Q ss_pred Hhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeC
Q 016548 152 DYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLP 230 (387)
Q Consensus 152 d~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~g 230 (387)
+++. |.++++++++++++||.++|+++|++++||||..++. ..+++|++|.+++++++.+.++++||.|+++|
T Consensus 86 ~~l~~p~~~~~~~l~~i~~Gi~~~~~~~g~~ivGG~t~~~~~------~~i~vt~iG~~~~~~~~~~~~a~~Gd~i~ltg 159 (318)
T PRK05731 86 LALALPKDLDEAWLEALADGLFELADRYGAELIGGDTTRGPD------LSISVTAIGDVPGGRALRRSGAKPGDLVAVTG 159 (318)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEECcccCCCCC------cEEEEEEEEEcCCCCcccccCCCCCCEEEEEC
Confidence 8774 6688999999999999999999999999999997652 46889999999988888999999999999999
Q ss_pred CCchhhhHHHHHHHHHhhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-
Q 016548 231 SSGVHSNGFSLVRRVLAQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP- 308 (387)
Q Consensus 231 s~G~~~~G~sl~~~i~~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~- 308 (387)
+.|.+.+|+.++++ +.+ ++.. ...+.+.+++|...+ +..+.+ + ..+++|||||+ ||+.+|+||+.
T Consensus 160 ~~G~~~~g~~~~~~-----~~~----~~~~~~~~~~~~~~~p~~~~-~~~~~~-~-~~v~a~~DiS~-GL~~~l~ema~~ 226 (318)
T PRK05731 160 TLGDSAAGLALLLN-----GLR----VPDADAAALISRHLRPQPRV-GLGQAL-A-GLASAAIDISD-GLAADLGHIAEA 226 (318)
T ss_pred CccHHHHHHHHHhc-----CCC----CChhhHHHHHHHhcCCCCCH-HHHHHH-h-hhchhheechH-hHHHHHHHHHHH
Confidence 99999998765432 111 1111 124567788887543 344433 3 34899999998 69999999996
Q ss_pred CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCce
Q 016548 309 KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGV 384 (387)
Q Consensus 309 s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv 384 (387)
+++|++|+.++||+++.+.++ .++.+|+++....++.++||+++|+++++++++.+++. +++++||+|++++.+
T Consensus 227 s~~g~~i~~~~ipi~~~~~~~--~~~~~~~~~~~~~g~~~~ll~~v~~~~~~~~~~~l~~~g~~~~~IG~v~~~~~~ 301 (318)
T PRK05731 227 SGVGADIDLDALPISPALREA--AEGEDALRWALSGGEDYELLFTFPPENRGALLAAAGHLGVGVTIIGRVTEGEGV 301 (318)
T ss_pred CCCeEEEeHHhCCCCHHHHHH--hcCCCHHHHHhcCCCceeEEEEECHHHHHHHHHHHHhcCCCceEEEEEEcCceE
Confidence 999999999999999988876 67889987754444556799999999999999999877 899999999987633
No 15
>PRK14105 selenophosphate synthetase; Provisional
Probab=100.00 E-value=2e-43 Score=350.75 Aligned_cols=277 Identities=18% Similarity=0.201 Sum_probs=209.7
Q ss_pred CCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCCh-HHHHHHhh-cCCCCCHHHHHHH
Q 016548 90 GIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAK-PLFFLDYF-ATSHLEVDLAEKV 167 (387)
Q Consensus 90 ~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~-Pl~~ld~l-~~~~~~~e~~~~i 167 (387)
++|||||+++.++..||+|||.+. +.+.+|+.+||++++.|+|||+||||+ |.+++..+ .|++.++++++++
T Consensus 45 g~gDDaAvi~~~~~~lv~t~D~f~------~~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~~~~l~lP~~~~~~~l~~i 118 (345)
T PRK14105 45 GLGDDAAVIIKNGLAIVKTVDVFT------PIVDDPYIQGKIAACNSTSDVYAMGLSEIIGVLVILGIPPELPIEVAKEM 118 (345)
T ss_pred CCCCceEEEeeCCeEEEEEecCCC------CCcCCHHHHHHHHHHHHHHHHHHcCCccHHHHHhhhcCCCCCCHHHHHHH
Confidence 789999999988888999999863 335678999999999999999999997 89999776 5888899999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++|+.++|+++|++|+||||..+|. ..++++++|..++++++.|++++|||.|++|+++|.|++ +.+.+. .+
T Consensus 119 ~~Gi~~~~~~~gv~lvGGdT~~~~~------~~l~~svtg~g~~~~~i~r~ga~~GD~I~vTg~lG~~~~-~~l~~l-~~ 190 (345)
T PRK14105 119 LQGFQDFCRENDTTIIGGHTILNPW------PLIGGAVTGVGKEEDILTKAGAKEGDVLILTKPLGTQSA-MALSRV-PE 190 (345)
T ss_pred HHHHHHHHHHhCCEEEeeeeccCCC------CEEEEEEEEEEcccceeeCCCCCCCCEEEEeCCChHHHH-HHHHhc-ch
Confidence 9999999999999999999998762 135566666667778999999999999999999999864 223221 11
Q ss_pred hcCCcccCCCCCch-----hHHHHHhcccchhh-HHHHHHHHH---hCCccEEecCCCchHhchHhhhcC-CCceEEEEc
Q 016548 248 QSGLSLKDQLPSEN-----TTLGEALMAPTVIY-VKQVLDIIS---TGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYE 317 (387)
Q Consensus 248 ~~~~~~~~~~p~~~-----~~~~e~ll~P~~~~-v~~~~~l~~---~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~ 317 (387)
+....+ .++... ....+.+.+|. .| ...+..... +..+++|+|||+|||+++|+||+. |+++++|+
T Consensus 191 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~DiSdgGL~~~L~ela~aS~v~i~i~- 266 (345)
T PRK14105 191 EFEDLI--DITKEEKEYIINKAIELMTTSN-RYALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSNVEIEIS- 266 (345)
T ss_pred hhhhhc--cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhhhccccCCeeEEEcCCCchHHHHHHHHHhhCCCeEEEE-
Confidence 100000 122110 11233334443 34 222222221 235899999999999999999996 99999996
Q ss_pred CCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEc-CCceEE
Q 016548 318 DSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVN-GEGVSY 386 (387)
Q Consensus 318 ~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~-g~gv~~ 386 (387)
+||+++.+.++++.++.....-+...++| |||+++|+++++++++.+++. +++++||+|++ +.++.+
T Consensus 267 -~iPi~~~~~~~~~~~~~~l~~g~~~~ssG-gLl~tv~~e~~~~~~~~l~~~g~~~~~IG~V~~~g~~~~~ 335 (345)
T PRK14105 267 -TLPVIKGTPELSSLFGHALLDGYGAETAG-GLLISVKPEYKDKLIDKLEKNNVYAFEVGKVVKNGVGKAK 335 (345)
T ss_pred -ccCCchhHHHHHHHhcccccCCCCCcccC-eEEEEecHHHHHHHHHHHHhCCCCceEEEEEEeCCCceEE
Confidence 89999999999988774221111234555 699999999999999999887 99999999976 666653
No 16
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=1.2e-42 Score=344.54 Aligned_cols=268 Identities=17% Similarity=0.239 Sum_probs=212.8
Q ss_pred CCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHh-hcCCCCCHHHHHHHH
Q 016548 90 GIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDY-FATSHLEVDLAEKVI 168 (387)
Q Consensus 90 ~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~-l~~~~~~~e~~~~i~ 168 (387)
..+|||++++.++++||++||+++ +...+ .|+.+||++|++|+|||+||||+|++++.. .+|++.+.+++++++
T Consensus 34 ~~dDdaa~~~~~~~~lv~ttDgvh----~~~~~-~p~~~G~~av~~nvSDIaAmGa~P~~~l~sl~lp~~~~~~~l~~i~ 108 (346)
T cd02691 34 AQDDDAGVDAADVEYIVVAIDGIH----SRLSD-FPFLAGFHATRAALRDVMVMGARPVALLSDIHLADDGDVGKLFDFT 108 (346)
T ss_pred cccCceEEEccCCCeEEEEeCCCC----CCccc-ChHHHHHHHHHHHHHHHHHcCCchHHhheeeecCCCCCHHHHHHHH
Confidence 678899999988889999999874 43332 467899999999999999999999999865 468888999999999
Q ss_pred HHHHHHHHHcCCeEEeecceeeCCcccC-CceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhh-hHHHHHHHHH
Q 016548 169 KGIVDGCQQSDCVLLGGETAEMPDFYAA-GEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHS-NGFSLVRRVL 246 (387)
Q Consensus 169 ~Gi~~ac~~~g~~lvGGeT~~~p~~~~~-~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~-~G~sl~~~i~ 246 (387)
+||.++|+++|++|+||||..+|+.+.. .++.+++|++|.+++ ..+.|++++|||.|++|+++|.++ .++.++
T Consensus 109 ~Gi~~a~~~~gv~lvGGdT~~~~~~~~~~~~l~~svT~iG~~~~-~~~~r~gA~pGD~I~vtg~~Gg~~~~~l~ll---- 183 (346)
T cd02691 109 AGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKS-DPSRRKNAEPGDLILMTEGAGGGTITTTAIY---- 183 (346)
T ss_pred HHHHHHHHHcCCeEEeeeeEEecCCcccCCceEEEEEEEEEecc-ccccccCCCCCCEEEEECCccHHHHHHHHHH----
Confidence 9999999999999999999988765432 345677899999876 456679999999999999998653 222222
Q ss_pred hhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHh---CCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCC-
Q 016548 247 AQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIST---GGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWK- 321 (387)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~---~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ip- 321 (387)
.... .+.+..+.|. +.+....+... ..+++|+|||+|||+.+|+||+. |++|++||.++||
T Consensus 184 ~~~~------------~~~~~~~~~~--~~~~~~~l~~~~~~~~v~am~DiSdGGL~~~L~ela~aSgvg~~Id~~~IP~ 249 (346)
T cd02691 184 HGMP------------DVVEETLNVD--FIKACEALRDSGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRS 249 (346)
T ss_pred ccch------------hHHHhhccHH--HHHHHHHHHHhCCCCCeEEEEcCCCchHHHHHHHHHHHcCCEEEEEhhhCcc
Confidence 1110 1222233332 33333333332 24899999999999999999996 9999999999997
Q ss_pred -CcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 322 -VPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 322 -i~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
+++.+.++++.++++|..+ +.+ +||+++|+++++++++.+++. .++++||+|++++++++
T Consensus 250 pl~~~v~~~~~~~~~~p~~~----~~~-~LL~tv~~~~~~~v~~~l~~~g~~~~vIG~V~~~~~~~l 311 (346)
T cd02691 250 LINPKVLKMLEELGIDPLGV----SLD-SLMIIAPEEDAVDIIRTLREAGVRADEVGRVEEGRGVPL 311 (346)
T ss_pred ccCHHHHHHHHHcCCChhHc----ccC-cEEEEEChHHHHHHHHHHHhcCCCeEEEEEEEeCCceEE
Confidence 8899999999999999653 223 699999999999999988876 89999999998877655
No 17
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=1e-43 Score=345.65 Aligned_cols=264 Identities=22% Similarity=0.298 Sum_probs=214.8
Q ss_pred CCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHHHH
Q 016548 91 IGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKVIK 169 (387)
Q Consensus 91 ~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i~~ 169 (387)
+||||++++.++..++++||++.++ ++++||++|++|+|||+||||+|+++++++. |++.++++++++++
T Consensus 31 ~gdDaav~~~~~~~lv~s~D~~~~~---------~~~iG~~av~~~~sDi~amGa~P~~~~~~l~~p~~~~~~~l~~~~~ 101 (298)
T cd06061 31 GGEDAAVVDFGGKVLVVSTDPITGA---------GKDAGWLAVHIAANDIATSGARPRWLLVTLLLPPGTDEEELKAIMR 101 (298)
T ss_pred ccceeEEEeeCCcEEEEEcCceeeC---------CcceeeehhhhhHHHHHhcCCCCceeEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999888999999998543 6789999999999999999999999999886 55678999999999
Q ss_pred HHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhc
Q 016548 170 GIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQS 249 (387)
Q Consensus 170 Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~ 249 (387)
||.++|+++|++++||||..++.+. .+.+++|++|.+++.+++.+++++|||.|+++|++|.|++|+.+..+ .+
T Consensus 102 Gi~~~~~~~gi~ivGG~t~~~~~~~---~~~i~vt~~G~~~~~~~~~~~~a~~Gd~i~ltg~~G~~~~~l~~~~~-~~-- 175 (298)
T cd06061 102 EINEAAKELGVSIVGGHTEVTPGVT---RPIISVTAIGKGEKDKLVTPSGAKPGDDIVMTKGAGIEGTAILANDF-EE-- 175 (298)
T ss_pred HHHHHHHHcCCeEEeeeeEEcCCCC---ccEEEEEEEEEEcccccccccCCCCCCEEEEeCCchHHHHHHHHHhh-HH--
Confidence 9999999999999999999887542 24799999999998888889999999999999999999888644221 11
Q ss_pred CCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHH
Q 016548 250 GLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFK 327 (387)
Q Consensus 250 ~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~ 327 (387)
.+...++.. .....+.+.+|. .++..+. +.+..+++|+|||+|||..+|+||+. +++|++||.+++|+++.+.
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~a~~DiSdGGL~~~l~~la~~s~~g~~i~~~~iP~~~~~~ 250 (298)
T cd06061 176 --ELKKRLSEEELREAAKLFYKIS--VVKEALI-AAEAGVTAMHDATEGGILGALWEVAEASGVGLRIEKDKIPIRQETK 250 (298)
T ss_pred --HHhhhcCHHHHHHHHHhhhhhh--hHHHHHH-hhhcCeeEEEeCCccHHHHHHHHHHHHcCCeEEEEecccCcCHHHH
Confidence 111222211 111233333332 2233332 22336899999999999999999986 9999999999999999999
Q ss_pred HHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEE
Q 016548 328 WIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEV 378 (387)
Q Consensus 328 ~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V 378 (387)
++++.++++|+++ +++| ++|+++|+++.+++++.+++. +++++||+|
T Consensus 251 ~~~~~~~~~~~~~---~~~G-~ll~~v~~~~~~~~~~~~~~~g~~~~~IG~v 298 (298)
T cd06061 251 EICEALGIDPLRL---ISSG-TLLITVPPEKGDELVDALEEAGIPASVIGKI 298 (298)
T ss_pred HHHHHcCCCHHHh---hcCC-cEEEEEChHHHHHHHHHHHHCCCCeEEEEeC
Confidence 9999999998765 4556 699999999999999999877 899999986
No 18
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=4.1e-41 Score=326.25 Aligned_cols=243 Identities=24% Similarity=0.264 Sum_probs=195.2
Q ss_pred CCCCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCC-CC---CHHH
Q 016548 89 PGIGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATS-HL---EVDL 163 (387)
Q Consensus 89 ~~~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~-~~---~~e~ 163 (387)
+++|||||+++++ +..|+++||.+. +.+.+|+++||++|++|+|||+||||+|++++++|+.+ +. ++++
T Consensus 38 ~~~gdDaavi~~~~~~~lv~stD~~~------~~~~~p~~~G~~av~~~~sDiaa~Ga~P~~~~~~l~lp~~~~~~~~~~ 111 (287)
T cd02195 38 LGTGDDAAVYRLPGGLALVQTTDFFP------PIVDDPYLFGRIAAANALSDIYAMGAKPLSALAIVTLPRKLPALQEEV 111 (287)
T ss_pred CCCCCcEEEEEeCCCcEEEEEecCCC------CCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHhcCCCccchhhHHH
Confidence 5889999999984 678999999553 33457889999999999999999999999999999754 44 7889
Q ss_pred HHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHH
Q 016548 164 AEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVR 243 (387)
Q Consensus 164 ~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~ 243 (387)
++++++||.++|+++|++++||||+++| .+.+++|++|.+++++++.++++++||.|++++++|.+.....+ +
T Consensus 112 l~~~~~Gi~~~~~~~g~~ivGGdt~~~~------~~~i~~t~~G~~~~~~~~~~~~a~~GD~I~ltg~lG~~~~~~~~-~ 184 (287)
T cd02195 112 LREILAGGKDKLREAGAVLVGGHTIEGP------EPKYGLSVTGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAE-M 184 (287)
T ss_pred HHHHHHHHHHHHHHcCCcEEeeeeccCC------CcEEEEEEEEEEcchheecCCCCCCCCEEEEcCCchHHHHHHHH-H
Confidence 9999999999999999999999999775 35789999999998889999999999999999999964321111 1
Q ss_pred HHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCC
Q 016548 244 RVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKV 322 (387)
Q Consensus 244 ~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi 322 (387)
. + ...+.. .....+.+.+|.. ....++++..+++|||||+|||..+|+||+. |++|++||.++||+
T Consensus 185 ---~--~-~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~gGL~~~L~~~a~~sg~g~~Id~~~ip~ 251 (287)
T cd02195 185 ---A--G-LARGED---IDAALESMARLNR----AAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPL 251 (287)
T ss_pred ---h--c-cCChHH---HHHHHHHHHhhhH----HHHHHHHhcCCeEeEecCCcHHHHHHHHHHhhcCCeEEEEeCCCce
Confidence 1 1 011111 1134445555532 2444555677999999999999999999996 89999999999987
Q ss_pred cHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEE
Q 016548 323 PAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEV 378 (387)
Q Consensus 323 ~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V 378 (387)
+ .+.| |||+++++++++++.+.+++. +++++||+|
T Consensus 252 ~--------------------~~~G-gll~~v~~e~~~~~~~~~~~~g~~~~~IG~v 287 (287)
T cd02195 252 L--------------------QTSG-GLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287 (287)
T ss_pred E--------------------eccC-ceEEEEcHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 6 1233 599999999999999988877 899999985
No 19
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=326.89 Aligned_cols=277 Identities=25% Similarity=0.356 Sum_probs=221.4
Q ss_pred CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHH-hhcCCCCCHHHHHHH
Q 016548 89 PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLD-YFATSHLEVDLAEKV 167 (387)
Q Consensus 89 ~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld-~l~~~~~~~e~~~~i 167 (387)
|..|+|++.+++.+..|+++||++.-. +..+. -.++||.||+.++|||++|||+|+|+.. .+.|+.++.|.++++
T Consensus 35 ~~~g~D~~~i~l~~~~la~tTD~~~i~-P~ff~---~~diG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i 110 (339)
T COG0309 35 LANGEDAAIIDLGDGVLAFTTDPFVID-PLFFP---GGDIGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERI 110 (339)
T ss_pred cccccceeeeecCCceEEEEeCCeEec-ccccC---CCceEEEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHH
Confidence 577999999999988999999998533 22222 2379999999999999999999999995 557999999999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++.|.+.|+++|++|++|||..+|+.. .+..+..|++|.++++..+..+++||||.|+++|+.|.|++++ +.+.
T Consensus 111 ~~si~e~a~~~Gv~IvtGdTkV~~~~~--~~~vi~tt~iG~~~~~~~v~~~~~~~GD~vI~tg~~g~hga~i--la~~-- 184 (339)
T COG0309 111 LKSIDEEAEEAGVSIVTGDTKVVPGGK--DPIVINTTGIGIIDKEILVSPSGARPGDAVIVTGTIGIHGASI--LAHR-- 184 (339)
T ss_pred HHHHHHHHHHcCCeEEccCceeecCCC--CCcEEEeeeEEeecCCcccccCCCCCCCEEEEcCChhHHHHHH--HHHh--
Confidence 999999999999999999999998754 1345667899999988889999999999999999999998764 2221
Q ss_pred hcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHH
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVF 326 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~ 326 (387)
.+.++...+..+...+.+.+.+ ....+...+.. .|+||||.|.|||+..|.||+. |++|++|+.+++|+.+++
T Consensus 185 -~~~~l~~~l~sD~~~~~~~~~~-~l~~~~~~~~~----~vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~~eV 258 (339)
T COG0309 185 -FGEELETELGSDCAPLAKLVKA-LLSVVGEALAA----AVTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEV 258 (339)
T ss_pred -cchhhccchhhhHHHHHHHHHH-Hhhcchhhhhh----hhhhccCCchhHHHHHHHHHHHHcCCeEEEeeccccccHHH
Confidence 1222333333322222222211 00011111111 1788999999999999999996 999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC--CCeEEEEEEEcCCc-eE
Q 016548 327 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG--YEAYHIGEVVNGEG-VS 385 (387)
Q Consensus 327 ~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~--~~~~vIG~V~~g~g-v~ 385 (387)
+.+|+.+|+||+++ -|+|- +|++|+|++++++++.|++. .++.+||+|+++++ |.
T Consensus 259 r~vce~lGiDPl~~---anEG~-lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~~~~~v~ 316 (339)
T COG0309 259 RGVCELLGLDPLEL---ANEGK-LVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVG 316 (339)
T ss_pred HHHHHHhCCCHHHh---hcCce-EEEEECHHHHHHHHHHHHhcCCccceeEEEEeccCCcEE
Confidence 99999999999754 79996 99999999999999999887 48999999998755 54
No 20
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=3.5e-40 Score=324.70 Aligned_cols=258 Identities=22% Similarity=0.308 Sum_probs=198.4
Q ss_pred CCCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHH
Q 016548 90 GIGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 168 (387)
Q Consensus 90 ~~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~ 168 (387)
++|||||+++++ +..||++||+++.+ +.+.+|+++||++|++|+|||+||||+|++++++|..+ +++++++++
T Consensus 42 g~GdDaavi~~~~~~~lvistD~~~~~----~~~~~p~~~G~~av~~nlsDiaamGa~P~~~~~~L~~~--~~~~l~~~~ 115 (323)
T TIGR03267 42 DFGDDAAAIKIGGDDILLLAADGIWGK----LLDADPWWAGYCAVLVNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVL 115 (323)
T ss_pred ccCCceEEEEcCCCCEEEEEecCcCCc----ccccChhHhhHHhhhhhhhhHHhcCCEehhHhhhhcCC--CHHHHHHHH
Confidence 789999999987 45799999998542 22345789999999999999999999999999999765 688999999
Q ss_pred HHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchh-hhHHHHHHHHHh
Q 016548 169 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVH-SNGFSLVRRVLA 247 (387)
Q Consensus 169 ~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~-~~G~sl~~~i~~ 247 (387)
+||.++|+++|++++||||..... | ..+++|++|.+++++++.++++++||.|+++++.+.. ..++.+ .
T Consensus 116 ~Gi~~a~~~~gi~ivGGdT~~~~~-~----~~i~vt~iG~~~~~~~~~r~~a~~GD~I~vtg~l~g~~~~~~~~-----~ 185 (323)
T TIGR03267 116 EGMREGAWKFGVPVVGGHTHPDTP-Y----NALDVAIVGIAKEDCIIRSDTAKPGDLIIFAIDLDGRPYPSFPL-----N 185 (323)
T ss_pred HHHHHHHHHcCCCEEccccCCCCC-c----ceeeEEEEEEEcCcceeeCCCCCCCCEEEEEEcCCCcccccccc-----C
Confidence 999999999999999999974211 1 2478899999998889999999999999999887532 111110 0
Q ss_pred hcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHH
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVF 326 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~ 326 (387)
+.. .... ....+.| ..+.+.++..++.+++|||||+|||+.+|+||+. |++|++|+.++||+++.+
T Consensus 186 -----~~~-~~~~----~~~~~~~---~~~~~~~~~~~~~v~a~~DiSdGGL~~~L~ema~~s~~G~~I~~~~iP~~~~~ 252 (323)
T TIGR03267 186 -----WDT-TTMK----SPDYLRA---QMDAVVEIAERKLVKAGKDISNPGLIGTLGMLLEASRVGAEVDLESIPKPEDV 252 (323)
T ss_pred -----ccc-hhcc----CHHHHHH---HHHHHHHHHHhCCceEEEcCCCCcHHHHHHHHHhhcCCcEEEEcCcccCCCCC
Confidence 000 0000 0011112 1233444555577999999999999999999986 999999999999988765
Q ss_pred HHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 327 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 327 ~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
.+ .+++ .++.|.+||+++||++++++++.+++. .++++||+|++++++++
T Consensus 253 ~~---------~~~l-~~~~g~~ll~tv~~e~~~~~~~~~~~~g~~~~~IG~v~~~~~~~l 303 (323)
T TIGR03267 253 DM---------VTWL-KMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDGKLYV 303 (323)
T ss_pred CH---------HHHH-HhCCCCCEEEEECchhHHHHHHHHHHcCCcEEEEEEEecCceEEE
Confidence 32 2222 244555699999999999999988877 89999999998766543
No 21
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=1.3e-39 Score=315.18 Aligned_cols=250 Identities=22% Similarity=0.271 Sum_probs=194.0
Q ss_pred CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHH
Q 016548 89 PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 168 (387)
Q Consensus 89 ~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~ 168 (387)
+++|||||++++++..||+++|++.... ...+++++||++|++|+|||+||||+|++++++|+.+ +++++++++
T Consensus 32 ~g~GdDaavi~~~~~~lvit~D~~~~~~----~~~~p~~~G~~av~~~vsDiaa~Ga~P~~~~~~l~~p--~~e~l~~i~ 105 (283)
T cd02192 32 ADLGDDAAAIPDGDGYLLLAADGIWPSL----VEADPWWAGYCSVLVNVSDIAAMGGRPLAMVDALWSP--SAEAAAQVL 105 (283)
T ss_pred CCCCCCEEEEecCCcEEEEEeccccccc----ccCCHHHHHHHHHHHHHHHHHhcCCEeeeeeeeecCC--CHHHHHHHH
Confidence 4899999999988889999999986542 1245789999999999999999999999999999866 468999999
Q ss_pred HHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhh
Q 016548 169 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQ 248 (387)
Q Consensus 169 ~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~ 248 (387)
+||.++|+++|++|+||||...+ ....+++|++|.+++.+++ ++++++||.|++++..+....|....
T Consensus 106 ~Gi~~a~~~~gi~ivGGdt~~~~-----~~~~i~vt~iG~~~~~~~~-r~~a~~GD~I~vtg~l~g~~~g~~~~------ 173 (283)
T cd02192 106 EGMRDAAEKFGVPIVGGHTHPDS-----PYNALSVAILGRARKDLLI-SFGAKPGDRLILAIDLDGRVHPSPPP------ 173 (283)
T ss_pred HHHHHHHHHcCCcEecccCCCCC-----CCCeEEEEEEEEEcCCccc-cCCCCCCCEEEEEeCCCCcccccccc------
Confidence 99999999999999999998532 1236889999999987777 99999999999998765443222110
Q ss_pred cCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHH
Q 016548 249 SGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFK 327 (387)
Q Consensus 249 ~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~ 327 (387)
.+.. .+... ..+++ .+.+...++...+.+++|||||+|||+.+|+||+. |++|++||.+++|+++.+.
T Consensus 174 ---~~~~-~~~~~----~~~~~---~~~~~~~~l~~~~~v~a~~DiSdGGL~~~L~ela~~sg~G~~Id~~~ip~~~~~~ 242 (283)
T cd02192 174 ---NWDA-TTMKS----PALLR---RQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIPRPEGVD 242 (283)
T ss_pred ---Cccc-cccCC----HHHHH---HHHHHHHHHHHcCCCceeecCCCCcHHHHHHHHHHhcCCcEEEecccCCCCCCCC
Confidence 0000 00000 01111 12334444555567999999999999999999986 9999999999999987542
Q ss_pred HHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEE
Q 016548 328 WIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGE 377 (387)
Q Consensus 328 ~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~ 377 (387)
..+++.. .++++||+++++++++++++.+++. +++++||+
T Consensus 243 ---------~~~~l~~-~~~~~ll~~v~~~~~~~v~~~l~~~gi~~~~IG~ 283 (283)
T cd02192 243 ---------LERWLKC-FPGFGFLLTARPENADEVVAVFAAVGITAAVIGE 283 (283)
T ss_pred ---------hHHHHHh-CCCCceEEEECHHhHHHHHHHHHHcCCcEEEeCC
Confidence 2333333 3567899999999999999999877 89999995
No 22
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00 E-value=1.7e-37 Score=289.68 Aligned_cols=219 Identities=32% Similarity=0.511 Sum_probs=186.8
Q ss_pred eEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeE
Q 016548 104 YLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVL 182 (387)
Q Consensus 104 ~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~l 182 (387)
.|++++|++.+++|+ +|+++|+++|++|+|||++||++|+++++++. |+..++++++++++|+.++|+++|+++
T Consensus 1 ~l~~~~D~~~~~~~~-----~p~~~g~~av~~~~sDl~a~Ga~P~~~~~~l~~~~~~~~~~~~~~~~Gi~~~~~~~gi~i 75 (222)
T cd00396 1 SLAMSTDGINPPLAI-----NPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDVVDGVAEACNQLGVPI 75 (222)
T ss_pred CeEEEECCCCCCcCC-----CCccHHHHHHHHhHHHHHhcCCccHHHhhheccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 378999999988772 46789999999999999999999999999986 555578999999999999999999999
Q ss_pred EeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchh
Q 016548 183 LGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENT 262 (387)
Q Consensus 183 vGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~ 262 (387)
+||||+.++++.. ..+++++|++|.+++.+.+.+.++++||.|+++| + +.
T Consensus 76 vgG~t~~~~~~~~-~~~~i~~t~~G~~~~~~~~~~~~~~~Gd~lv~~g--------~---~~------------------ 125 (222)
T cd00396 76 VGGHTSVSPGTMG-HKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG--------V---DA------------------ 125 (222)
T ss_pred eceeeEEccCCcC-CCceEEEEEEEEecCCccccccCCCCCCEEEEeC--------h---HH------------------
Confidence 9999999876522 2467999999999987777778999999999998 0 00
Q ss_pred HHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHH
Q 016548 263 TLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMR 341 (387)
Q Consensus 263 ~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~ 341 (387)
+.++.+.+.+++|||||+|||+.+|+||+. +++|++|+.+++|+++.+.++++... ++.
T Consensus 126 ----------------~~~l~~~~~v~a~~Dvs~GGl~~~l~ema~~s~~g~~i~~~~ip~~~~~~~~~~~~~----~~~ 185 (222)
T cd00396 126 ----------------VLELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHI----EEA 185 (222)
T ss_pred ----------------HHHHHHhCCeeEEEeCCCCcHHHHHHHHHHhcCCEEEEecccCcCcHHHHHHHHhcC----cch
Confidence 111233457999999999999999999986 89999999999999999999986543 334
Q ss_pred HhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEE
Q 016548 342 RTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGE 377 (387)
Q Consensus 342 ~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~ 377 (387)
.+|++++++|++++|++++++.+.+++. .++++||+
T Consensus 186 ~~~~~~~~ll~~v~~~~~~~~~~~~~~~g~~~~~IG~ 222 (222)
T cd00396 186 LLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222 (222)
T ss_pred hhhccCccEEEEECHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5788888899999999999999998877 89999995
No 23
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=4.4e-35 Score=305.75 Aligned_cols=275 Identities=21% Similarity=0.304 Sum_probs=209.7
Q ss_pred HHHHHHHhhCC--CCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc
Q 016548 79 ELVRRIAKMAP--GIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA 155 (387)
Q Consensus 79 ~~v~~i~~~~~--~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~ 155 (387)
++.+++.+.+| ++||||||+++++ ..+++++|+.. | +..-.|+.+|+.+|..++|||++|||+|++++++|.
T Consensus 34 ~~~k~~l~~~~~~g~gdDAaVi~~~~~~~l~~k~Eshn---~--ps~idPy~GAat~Vgg~irDIaamGA~Pialld~L~ 108 (601)
T PRK14090 34 SHTKKYIRRLPKTGFEGNAGVVNLDDYYSIAFKIESHN---H--PSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDSLH 108 (601)
T ss_pred HHHHHHHhhCCCCCCCCCeEEEEeCCCCEEEEEECccC---C--cccCCHHHHHHHHHHHHHhhHhhcCCChheeEEcCC
Confidence 34445444444 8899999999875 46899998753 1 222357899999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCC----
Q 016548 156 TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS---- 231 (387)
Q Consensus 156 ~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs---- 231 (387)
++ ++++++++||.++|+++|+|++||||+..+.+ ... ..++++++|.+++++++.+..+++||.|+++|.
T Consensus 109 ~~----~~l~~vv~GI~~~~n~~GVP~VGGdt~~~~~y-~~~-plv~vt~vG~v~~~~iv~~~~a~~GD~Ivl~G~~tGr 182 (601)
T PRK14090 109 MS----RIIDGIIEGIADYGNSIGVPTVGGELRISSLY-AHN-PLVNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGR 182 (601)
T ss_pred hH----HHHHHHHHHHHHHHHHhCCCEeeEEEEEeCCc-cCC-CceEEEEEEEEcCccccccCCCCCCCEEEEEcCCCCC
Confidence 65 68999999999999999999999999987643 222 357889999999888898999999999999985
Q ss_pred CchhhhHHHHHHHHHhhcC-CcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-C
Q 016548 232 SGVHSNGFSLVRRVLAQSG-LSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-K 309 (387)
Q Consensus 232 ~G~~~~G~sl~~~i~~~~~-~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s 309 (387)
.|.|+.. ++.+.+.... ....-+... ...+ +...+..++..+.+.+++|+|+|.|||+.+|+||+. +
T Consensus 183 dGi~Gas--~as~~l~~~~~~~~~vq~gd---~~~e------k~l~e~~l~~~~~glI~a~~DigaGGLa~AL~EmA~~s 251 (601)
T PRK14090 183 DGIHGAS--FASEDLTGEKATKLSIQVGD---PFAE------KMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKG 251 (601)
T ss_pred CCcchHH--HHHHHhcCCcccccccccCC---HHHH------HHHHHHHHhHHhcCCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 3566543 3333222110 000000100 1111 112334445556678999999999999999999985 9
Q ss_pred CceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 310 GLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 310 ~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
++|++||++++|+.+ .+++|+|+ +|++..| |+++|+|++.+++++.+++. +++.+||+|++.+.++
T Consensus 252 g~G~~IdLdkVPl~~--------~~m~p~ei--l~SESqeRmlv~V~~e~~~~~~~i~~~~~l~a~vIG~Vt~~~~l~ 319 (601)
T PRK14090 252 GLGAIVHLDRVPLRE--------PDMEPWEI--LISESQERMAVVTSPEKASRILEIAKKHLLFGDIVAEVIDDPIYR 319 (601)
T ss_pred CCeEEEEecccccCc--------ccCCHHHH--HhcCCCCeEEEEECHHHHHHHHHHHHhCCCCEEEEEEEeCCceEE
Confidence 999999999999876 36889888 4787765 99999999999999999877 8999999999775443
No 24
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=2e-35 Score=289.75 Aligned_cols=257 Identities=23% Similarity=0.283 Sum_probs=193.4
Q ss_pred eEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCC------------CHHHHHHHHHHH
Q 016548 104 YLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHL------------EVDLAEKVIKGI 171 (387)
Q Consensus 104 ~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~------------~~e~~~~i~~Gi 171 (387)
.+++++|+.. +...+ +|+++||++|+.|+|||+||||+|+++++++..+++ +.++++++++||
T Consensus 27 ~~~~~~e~~~----~~~~~-~p~~~g~~~v~~~vsDiaamGa~P~~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~~~~Gi 101 (313)
T cd02203 27 AVVFKVETHN----HPSAI-EPFGGAATGVGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGI 101 (313)
T ss_pred EEEEEeccCC----CCCCc-CCcccHhhhhhhhhhcccccCCEEEEEeeEEeecCCcccccccccccCHHHHHHHHHHHH
Confidence 4888999873 43333 467899999999999999999999999999875543 246799999999
Q ss_pred HHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCC----CchhhhHHHHHHHHHh
Q 016548 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLA 247 (387)
Q Consensus 172 ~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs----~G~~~~G~sl~~~i~~ 247 (387)
.++|+++|++++||||+.++..+.. ..++++++|.+++++++.++++++||.|+++|. .|.++.++ +...+.
T Consensus 102 ~~~~~~~gv~lvGGdt~~~~~~~~~--p~~~~~~~G~~~~~~~~~~~~a~~GD~I~l~G~~~~~~gl~G~~~--~~~~~~ 177 (313)
T cd02203 102 SDYGNCIGIPTVGGEVRFDPSYYGN--PLVNVGCVGIVPKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATF--SSKELS 177 (313)
T ss_pred HHHHHHhCCceeeeEEEEECCcCCC--ceEEEEEEEEEehhhcccCCCCCCCCEEEEecCCCCCCCccHHHH--HHHHhc
Confidence 9999999999999999998764332 346788999999888888899999999999985 66665443 322222
Q ss_pred hcCCc-ccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHH
Q 016548 248 QSGLS-LKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 248 ~~~~~-~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~ 325 (387)
..... ....++.....+.. ...+.+..+++.+.+++|||||+|||+.+|+||+. +++|++|+.++||+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~ema~as~~G~~I~~~~iP~~~~ 250 (313)
T cd02203 178 ENSSELDRPAVQVGDPFMEK-------KLQEAILEARETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREP 250 (313)
T ss_pred CccccccCCCCCccCHHHHH-------HHHHHHHHHHhcCCEEEEEecCCchHHHHHHHHHhcCCceEEEEecCCcccCC
Confidence 10000 01112111001111 12233445555678999999999999999999986 89999999999998763
Q ss_pred HHHHHHhCCCCHHHHHHhcCCCe-eEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 326 FKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 326 ~~~i~~~~~i~~~e~~~~fn~G~-gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
.++|.+++ |+++. ++|++++|++.+++++.+++. +++++||+|++++.+++
T Consensus 251 --------~~~~~~~~--~se~~~~ll~tv~~~~~~~~~~~l~~~gi~~~~IG~vt~~~~~~l 303 (313)
T cd02203 251 --------GMSPWEIW--ISESQERMLLVVPPEDLEEFLAICKKEDLEAAVIGEVTDDGRLRL 303 (313)
T ss_pred --------CCCHHHHH--hcCccccEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCeEEE
Confidence 35777764 55553 599999999999999998877 89999999998776654
No 25
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=7.5e-36 Score=322.14 Aligned_cols=295 Identities=25% Similarity=0.331 Sum_probs=217.0
Q ss_pred CCCchhhhcCcCHHHHHHHHHHHHhhC----CCCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHH
Q 016548 62 SEGLTYKDAGVDIDAGSELVRRIAKMA----PGIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMS 136 (387)
Q Consensus 62 ~~~~~y~~~gvdi~~~~~~v~~i~~~~----~~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~n 136 (387)
.++++||.+ ..+++.+.... .++||||||+++++ ..+++++|.. +.+....|+.+|+.+|..|
T Consensus 30 sehc~~k~~-------~~~~~~~~~~~~~v~~g~gDDaavi~~~~~~~lv~~~e~h-----~~p~~~~P~~~a~~~v~~~ 97 (715)
T TIGR01736 30 SEHCSYKSS-------KKLLKQFPTKGPNVIQGPGEDAGVVDIGDGYAVVFKMESH-----NHPSAIEPYNGAATGVGGI 97 (715)
T ss_pred hhhcCCcCc-------HHHHhhCCCCCCcEEEeeCCceEEEEeCCCeEEEEEeccC-----CCCCCcCCCCchhhcccce
Confidence 456778765 23444442222 27899999999874 4578877752 3233345678999999999
Q ss_pred HHHHhhhCChHHHHHHhhcCCCC---CH-HHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCC
Q 016548 137 VNDIVTSGAKPLFFLDYFATSHL---EV-DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKD 212 (387)
Q Consensus 137 vnDIaa~GA~Pl~~ld~l~~~~~---~~-e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~ 212 (387)
+|||+||||+|++++++|..+++ .+ ++++++++|+.++|+++|++++||||..++.+.. + ..+++|++|.++++
T Consensus 98 vsDi~amGa~P~~~~~~l~~~~~~~~~~~~~l~~~~~Gi~~~~~~~Gv~ivGG~t~~~~~~~~-~-~~v~~t~iG~~~~~ 175 (715)
T TIGR01736 98 LRDILSMGARPIALLDSLRFGPLDDPKNRYLFEGVVAGISDYGNRIGVPTVGGEVEFDESYNG-N-PLVNVMCVGLVRKD 175 (715)
T ss_pred ecccccCCCeEeeEEEEeccCCCCCcchHHHHHHHHHHHHHhccccCCCccceEEEEecCcCC-C-CeEEEEEEEEEchH
Confidence 99999999999999998876543 23 4689999999999999999999999998876432 2 24789999999988
Q ss_pred CccCCCCCCCCCEEEEeC-CCchhhhHH-HHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccE
Q 016548 213 SVVDGKNIVPGDVLIGLP-SSGVHSNGF-SLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKG 290 (387)
Q Consensus 213 ~~l~~~~a~~GD~Ii~~g-s~G~~~~G~-sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a 290 (387)
+++.++++++||.|+++| ..|..+.|. ++.++.+..... ....+. ....+.++ .+...+..+++.+++.|++
T Consensus 176 ~~~~~~~a~~GD~Iv~~G~~~G~~g~gg~~~~~~~~~~~~~--~~~~~~--v~~~~~~~--~~~~~~~~~~l~~~~~v~a 249 (715)
T TIGR01736 176 DIVTGKAKGPGNKLVLVGGKTGRDGIGGATFASEELSEEAE--EEDRPA--VQVGDPFT--EKLLIEATLEAVDTGLVKG 249 (715)
T ss_pred HcccCCCCCCCCEEEEeCCCCCcCCccHHHHHHHHhccccc--cccCcc--cccCCcHH--HHHHHHHHHHHhccCCEEE
Confidence 888888899999999998 565443333 344433321100 001110 01111110 0123455666676778999
Q ss_pred EecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC
Q 016548 291 IAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG 369 (387)
Q Consensus 291 ~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~ 369 (387)
|+|+|+|||..+|+||+. +++|++||+++||+++. +++|+|++...+++ +|+++|+|++.+++++.+++.
T Consensus 250 ~~Dis~gGL~~~l~ema~~s~~G~~I~l~~iP~~~~--------~~~~~e~~~se~qe-~ll~~v~~~~~~~~~~~~~~~ 320 (715)
T TIGR01736 250 IKDLGAAGLTSASSEMAAKGGLGAEIYLDKVPLREP--------GMTPYEIMLSESQE-RMLLVVAPEDVEEVLEIFEKY 320 (715)
T ss_pred EEEcCCchHHHhHHHHhccCCcEEEEEcccCccCCC--------CCCHHHHHHhcccc-eEEEEEChhhHHHHHHHHHHc
Confidence 999999999999999996 89999999999998763 68898885444433 699999999999999999887
Q ss_pred -CCeEEEEEEEcCCceE
Q 016548 370 -YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 370 -~~~~vIG~V~~g~gv~ 385 (387)
+++++||+|++++.+.
T Consensus 321 g~~~~vIG~v~~~~~~~ 337 (715)
T TIGR01736 321 ELPASVIGEVTDEGRIR 337 (715)
T ss_pred CCCEEEEEEEecCCeEE
Confidence 9999999999865443
No 26
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=5.1e-35 Score=279.73 Aligned_cols=251 Identities=20% Similarity=0.187 Sum_probs=185.2
Q ss_pred ceEEEecC---CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcC---CCCC--HHHHH
Q 016548 94 FGGLFPLG---DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFAT---SHLE--VDLAE 165 (387)
Q Consensus 94 Daavi~~~---~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~---~~~~--~e~~~ 165 (387)
||||++.+ +..+++++|..... .+.+|+.+||++|++|+|||++|||+|+++++++.. .+.+ .++++
T Consensus 1 Daav~~~~~~~~~~~~~t~d~~~~~-----~~~~p~~~g~~av~~~~sDiaa~Ga~P~~~~~~l~~~~~~~~~~~~~~l~ 75 (264)
T cd02204 1 DAAVLRIPGETDKGLAMSTGENPRY-----SLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNFGNPEKPEGEMGQLV 75 (264)
T ss_pred CcEEEEEeCCCCeEEEEEcCCCCce-----eeeCHHHHHHHHHHHHHHHHhhhCCchHheeeceeccCCCCCcchHHHHH
Confidence 79999987 45689999975322 234588999999999999999999999999988743 2222 34699
Q ss_pred HHHHHHHHHHHHcCCeEEeecceeeCCccc-CCceeEEEEEEEEEcCCCccCC-CCCCCCCEEEEeCCCchhhhHHHHHH
Q 016548 166 KVIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVVDG-KNIVPGDVLIGLPSSGVHSNGFSLVR 243 (387)
Q Consensus 166 ~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~-~~~~~lsgtavG~v~~~~~l~~-~~a~~GD~Ii~~gs~G~~~~G~sl~~ 243 (387)
++++|+.++|+++|++++||||+.++..-. .....+++|++|.+++.+.+.+ .++++||.|+++++.|.+..|..+..
T Consensus 76 ~~~~g~~~~~~~~gv~ivGG~t~~~~~~~~~~~~~~~~~t~~G~~~~~~~~~~~~~a~~Gd~i~~~g~~g~~~~~~~~~~ 155 (264)
T cd02204 76 EAVLGLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYAL 155 (264)
T ss_pred HHHHHHHHHHHHhCCCcccceeCCccCCCCcccCCcCeEEEEEEccChhhccCcccCCCCCEEEEECCCCCCCCCcHHHH
Confidence 999999999999999999999986543210 0123578899999987666555 88999999999999999876654433
Q ss_pred HHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCC
Q 016548 244 RVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKV 322 (387)
Q Consensus 244 ~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi 322 (387)
...+. . ....+.. .+ +.+ +...+.+..+.+.+.+++|||||+|||+.+|+||+. +++|++|+.+++|.
T Consensus 156 ~~~~~-~---~~~~~~~--~~-~~~----~~~~~~~~~l~~~~~i~a~~DiSdGGL~~~l~ema~~s~~G~~i~~~~i~~ 224 (264)
T cd02204 156 AYHGL-G---GGAPPLV--DL-ERE----KALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDA 224 (264)
T ss_pred HhcCC-C---CCCCCCC--CH-HHH----HHHHHHHHHHHhCCCEEEEeeccccHHHHHHHHHHhcCCceEEEEcCCCCc
Confidence 21111 1 1111111 11 111 112234555566677999999999999999999996 89999999999998
Q ss_pred cHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEE
Q 016548 323 PAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEV 378 (387)
Q Consensus 323 ~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V 378 (387)
++ + .+|++..| +|++++++..+++. +++. +++++||+|
T Consensus 225 ~~--------------~--~l~~e~~g~ll~~~~~~~~~~~~--~~~~~i~~~~IG~v 264 (264)
T cd02204 225 ED--------------E--LLFSESLGRVLVEVKPENEEVFE--AEEAGVPATVIGTV 264 (264)
T ss_pred cc--------------c--eeecCCCCeEEEEEChhHHHHHH--HHhCCCCeEEeecC
Confidence 75 1 13555555 89999999888876 5555 899999985
No 27
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=1.1e-34 Score=313.01 Aligned_cols=292 Identities=22% Similarity=0.286 Sum_probs=216.2
Q ss_pred CCCchhhhcCcCHHHHHHHHHHHHhhC----CCCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHH
Q 016548 62 SEGLTYKDAGVDIDAGSELVRRIAKMA----PGIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMS 136 (387)
Q Consensus 62 ~~~~~y~~~gvdi~~~~~~v~~i~~~~----~~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~n 136 (387)
.++++||.+- .+++++.... .++||||||+++++ ..+++++|. |+.+..-.|+.+|+.+|..+
T Consensus 42 sehc~~k~s~-------~~l~~~~~~~~~v~~g~gdDaavi~~~~~~~lv~~~Es-----h~~p~~~~P~~ga~~~v~~~ 109 (724)
T PRK01213 42 SEHCSYKSSK-------PLLRKFPTKGPRVLQGPGENAGVVDIGDGQAVVFKIES-----HNHPSAVEPYQGAATGVGGI 109 (724)
T ss_pred hccccCCCCH-------HHHhcCCCCCCcEEEeeCCCceEEEcCCCcEEEEEecc-----CCCCCccCCccchhhcccce
Confidence 4677777743 4444432211 27899999999974 467888763 44444345678999999999
Q ss_pred HHHHhhhCChHHHHHHhhcCCCC----CHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCC
Q 016548 137 VNDIVTSGAKPLFFLDYFATSHL----EVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKD 212 (387)
Q Consensus 137 vnDIaa~GA~Pl~~ld~l~~~~~----~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~ 212 (387)
+|||+||||+|++++++|.++++ +.++++++++|+.++|+++|+|++||||...+++.. + ..++++++|.++++
T Consensus 110 i~Di~amGa~P~a~~~~l~~~~~~~~~~~~~l~~~~~Gi~~~~n~~Gvp~vgG~t~~~~~~~~-~-p~v~~~~iG~~~~~ 187 (724)
T PRK01213 110 LRDIFSMGARPIALLDSLRFGELDHPKTRYLLEGVVAGIGGYGNCIGVPTVGGEVYFDESYNG-N-PLVNAMCVGLVRHD 187 (724)
T ss_pred eccccccCceeeeeeeEEEccCCCCCcHHHHHHHHHHHHHHHHHhcCCCEeeEEEEEeCCcCC-C-ceEEEEEEEEEcHH
Confidence 99999999999999999876554 346799999999999999999999999998876432 2 34788999999987
Q ss_pred CccCCCCCC-CCCEEEEeCC----CchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCC
Q 016548 213 SVVDGKNIV-PGDVLIGLPS----SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGG 287 (387)
Q Consensus 213 ~~l~~~~a~-~GD~Ii~~gs----~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~ 287 (387)
+++ +++++ |||.|+++|. .|.|+. ++.++.+.... . ...|. .++++.+.. +..++.++++++.+.
T Consensus 188 ~~~-r~~~~~~Gd~Ii~~G~~tg~~Gigg~--~~~s~~~~~~~--~-~~~~~--vq~g~~~~~--~~l~~~~~~~~~~~~ 257 (724)
T PRK01213 188 DIV-LAKASGVGNPVVYVGAKTGRDGIGGA--SFASAELSEES--E-EKRPA--VQVGDPFME--KLLIEACLELIKTGL 257 (724)
T ss_pred Hcc-cCCCCCCCCEEEEeCCCcCcccCcHH--HHHHhhhhccc--c-ccCcc--cccCCcHHH--HHHHHHHHHHhccCC
Confidence 744 55555 9999999776 455532 34443332211 0 11121 122222221 123455667777788
Q ss_pred ccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhh
Q 016548 288 VKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGG 366 (387)
Q Consensus 288 v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l 366 (387)
|++|+|+|+|||..+|+||+. +++|++|+++++|+.+. +++|+|++...+++ +|+++|+|++.+++++.+
T Consensus 258 v~a~~D~g~gGL~~al~Ema~~s~~G~~I~ld~iP~~~~--------~~~p~ei~~sesqe-rml~~v~~~~~~~~~~~~ 328 (724)
T PRK01213 258 VVGIQDMGAAGLTCSSSEMAAKGGLGIELDLDKVPLREE--------GMTPYEIMLSESQE-RMLLVVKPGKEEEVLAIF 328 (724)
T ss_pred EEEEEECCCCcHHHhHHHHhccCCcEEEEEcccccccCC--------CCCHHHHHhccccc-eEEEEECHHHHHHHHHHH
Confidence 999999999999999999996 89999999999998763 68999986544443 699999999999999999
Q ss_pred cCC-CCeEEEEEEEcCCceEE
Q 016548 367 RGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 367 ~~~-~~~~vIG~V~~g~gv~~ 386 (387)
++. +++++||+|+++..+++
T Consensus 329 ~~~~~~~~vIG~vt~~~~~~~ 349 (724)
T PRK01213 329 EKWDLDAAVIGEVTDDGRLRV 349 (724)
T ss_pred HHcCCCEEEEEEEecCCeEEE
Confidence 887 99999999998765543
No 28
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=1.3e-32 Score=297.09 Aligned_cols=262 Identities=18% Similarity=0.230 Sum_probs=197.2
Q ss_pred CCCCceEEEecCC-ce--EEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCC-H---H
Q 016548 90 GIGGFGGLFPLGD-SY--LVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-V---D 162 (387)
Q Consensus 90 ~~GdDaavi~~~~-~~--Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~-~---e 162 (387)
++|+||||+++++ .. +++++|..... + ..+|+.+||.+|++|+|||+||||+|++++++|+.++++ + +
T Consensus 415 ~pgdDaaVi~~~~~~~~glv~t~D~~~~~--~---~~~P~~~g~~aV~~~vsDiaa~Ga~P~~~~~~l~~g~p~~~~~~~ 489 (715)
T TIGR01736 415 KPGEDAAVLRIKETGKLGLALTADCNPRY--V---YLDPYAGAAGAVAEAYRNLAAVGAEPLAAVDCLNFGNPERPEVYW 489 (715)
T ss_pred ccCCceEEEEecCCCceEEEEEecCCCCc--h---hcCHHHHHHHHHHHHHHHHhhcCCeehhheeeeccCCCCChhHHH
Confidence 6899999999864 45 99999996432 1 245789999999999999999999999999988765443 2 3
Q ss_pred HHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCC-ceeEEEEEEEEEcC-CCccCCCCCCCCCEEEEeCCCchhhhHHH
Q 016548 163 LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAG-EYDLSGFAVGIVKK-DSVVDGKNIVPGDVLIGLPSSGVHSNGFS 240 (387)
Q Consensus 163 ~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~-~~~lsgtavG~v~~-~~~l~~~~a~~GD~Ii~~gs~G~~~~G~s 240 (387)
.++++++||.++|+++|++++||||+.++...... ...++++++|.+++ ++++++..+++||.|+++|..|.+..|+.
T Consensus 490 ~l~~~~~gi~~~~~~~gv~ivGG~ts~~~~~~~~~i~pt~~v~~~G~~~~~~~~i~~~~a~~Gd~i~l~g~~g~~~~G~~ 569 (715)
T TIGR01736 490 QFVEAVKGLGDACRALGTPVVGGNVSLYNETNGVPIAPTPTIGMVGLVEDVEKLLTSNFKKEGDAIYLIGETKDELGGSE 569 (715)
T ss_pred HHHHHHHHHHHHHHHhCCCcccceeeeccccCCCCCCCcceEEEEEeccChhhccCcccCCCCCEEEEEeCCCCCccHHH
Confidence 48999999999999999999999998654321100 11467899999987 78888899999999999999999988887
Q ss_pred HHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCC
Q 016548 241 LVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDS 319 (387)
Q Consensus 241 l~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ 319 (387)
+++...... ....|.. .+.+. +...+.+.++++.+.|++|||||+|||+.+|+||+. +++|++|+.++
T Consensus 570 ~~~~~~~~~----~~~~p~~--~~~~~-----~~~~~~i~~l~~~g~v~a~~DiSdGGL~~aL~ema~~s~~G~~I~l~~ 638 (715)
T TIGR01736 570 YLRVIHGIV----SGQVPAV--DLEEE-----KELADAVREAIRAGLVSAAHDVSRGGLAVALAEMAAASGIGAEVDIDE 638 (715)
T ss_pred HHHHhcCCc----CCcCCCC--CHHHH-----HHHHHHHHHHHHcCCeEEEEeCCcChHHHHHHHHHhCCCceEEEEcCC
Confidence 765422111 1123321 11111 122334556667788999999999999999999986 99999999999
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 320 WKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 320 ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
+|+. ++.++ +|++..| ||++|++++++++++ +. +++.+||+ +.++.+.
T Consensus 639 ip~~------------~~~~~--lfses~g~~v~~v~~~~~~~~l~---~~gi~~~vIG~-~~~~~l~ 688 (715)
T TIGR01736 639 IASA------------RPDEL--LFSESNGRAIVAVPEEKAEEAVK---SKGVPAKVIGK-TGGDRLT 688 (715)
T ss_pred CcCc------------chHHH--HhCCCCccEEEEECchHHHHHHH---HcCCCEEEEEE-ECCCeEE
Confidence 9861 23333 4666666 999999988755554 34 88999999 6555544
No 29
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=3.6e-32 Score=293.66 Aligned_cols=264 Identities=17% Similarity=0.187 Sum_probs=197.3
Q ss_pred CCCCceEEEecCC--ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCC-HH---H
Q 016548 90 GIGGFGGLFPLGD--SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-VD---L 163 (387)
Q Consensus 90 ~~GdDaavi~~~~--~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~-~e---~ 163 (387)
++|+||||+++++ ..+++++|+.... + ..+|+.+|+.+|++|+|||+||||+|++++++|++++++ ++ +
T Consensus 425 ~pGdDaAVi~~~~~~~~l~~s~D~~~~~--~---~~~P~~~g~~AV~~avsdiaa~Ga~P~~~~~~l~~~~p~~~~~~~~ 499 (724)
T PRK01213 425 KPGGDAAVLRIRGGGKGLALTTDCNPRY--V---YLDPYEGAKLAVAEAARNLAAVGATPLAITDCLNFGNPEKPEVMWQ 499 (724)
T ss_pred cCCCCeEEEEecCCCEEEEEEecCCCCc--c---ccCHHHHHHHHHHHHHHHHhccCCeehhheeeeecCCCCchHHHHH
Confidence 6799999999864 6799999996432 2 235789999999999999999999999999999766553 33 4
Q ss_pred HHHHHHHHHHHHHHcCCeEEeecceeeCCcccCC-ceeEEEEEEEEEcCCCccCCCCC-CCCCEEEEeCCCchhhhHHHH
Q 016548 164 AEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAG-EYDLSGFAVGIVKKDSVVDGKNI-VPGDVLIGLPSSGVHSNGFSL 241 (387)
Q Consensus 164 ~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~-~~~lsgtavG~v~~~~~l~~~~a-~~GD~Ii~~gs~G~~~~G~sl 241 (387)
+.++++||.++|+++|+|++||||+.++..-... ..+++++++|.+++.+.+.+.++ ++||.|+++|..|.+..|..+
T Consensus 500 l~~~~~Gi~~a~~~~gvpivGG~~s~~n~~~~~~i~pt~~vt~vG~~~~~~~~~~~~~k~~GD~I~l~g~~~~~~ggs~~ 579 (724)
T PRK01213 500 FVEAVRGLADACRALGTPVVGGNVSLYNETGGTAIYPTPVIGMVGLIDDVSKRTTSGFKKEGDLIYLLGETKDELGGSEY 579 (724)
T ss_pred HHHHHHHHHHHHHHhCCCcccceeeeeCCCCCcccCCcceEEEEEEecCHhhCcChhcCCCCCEEEEEcCCCCCccHHHH
Confidence 9999999999999999999999998754321000 12467889999986444555555 999999999999988878766
Q ss_pred HHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCC
Q 016548 242 VRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSW 320 (387)
Q Consensus 242 ~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~i 320 (387)
++...+. .....|.. .+... +.+.+.+.++++.+.+++|||||+|||+.+|+||+. +++|++|+++.
T Consensus 580 ~~~~~~~----~~~~~p~~--~~~~~-----~~~~~~l~~l~~~g~v~a~~DvSdGGL~~aL~ema~as~~G~~I~l~~- 647 (724)
T PRK01213 580 LKVIHGH----VGGRPPKV--DLEAE-----KRLQELVREAIREGLVTSAHDVSEGGLAVALAEMAIAGGLGAEVDLSD- 647 (724)
T ss_pred HHHhcCC----cCCCCCCC--CHHHH-----HHHHHHHHHHHHCCCeEEEEeCCcCcHHHHHHHHHhcCCceEEEEeCC-
Confidence 5432221 11223321 11111 112344556667788999999999999999999985 89999999763
Q ss_pred CCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 321 KVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 321 pi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
+.+ +.++ +|++..| +|++|+|++.+++.+.+++. +++++||+|++ +.+.+
T Consensus 648 ~~~-------------~~~~--Lf~e~~g~~v~~V~~~~~~~v~~~l~~~gi~~~~IG~v~~-~~l~i 699 (724)
T PRK01213 648 GLR-------------PDAL--LFSESQGRYVVSVPPENEEAFEALAEAAGVPATRIGVVGG-DALKV 699 (724)
T ss_pred CCC-------------hHHH--hhCCCCceEEEEEchhHHHHHHHHHHHCCCCeEEEEEEcC-CEEEE
Confidence 222 2222 4666555 99999999999999998877 89999999976 55543
No 30
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=263.14 Aligned_cols=255 Identities=22% Similarity=0.302 Sum_probs=194.8
Q ss_pred CCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHH
Q 016548 90 GIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIK 169 (387)
Q Consensus 90 ~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~ 169 (387)
..|||||++++++.+|+++.||..-|+.- .+|+.+||++|.+|+|||+|||++|++++|.+..+ ++++.+++++
T Consensus 41 ~~GDDAavI~v~~~~lliaadGi~g~l~~----~dPw~aG~csvLVn~~DV~amGG~Pv~~vd~isa~--s~d~~~ei~e 114 (324)
T COG2144 41 DFGDDAAVIRVGDGKLLIAADGIWGKLID----ADPWWAGYCSVLVNVNDVAAMGGEPVGAVDAISAK--SEDQAREILE 114 (324)
T ss_pred ccCCceEEEeeCCcEEEEecCCccccccc----cCchhhhceeEEEeehhhhhhCCcceEEEEeeecC--CHHHHHHHHH
Confidence 57999999999999999999999766432 34679999999999999999999999999988544 6889999999
Q ss_pred HHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEE-EEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhh
Q 016548 170 GIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAV-GIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQ 248 (387)
Q Consensus 170 Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtav-G~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~ 248 (387)
||.++++++|+|++||||... ..|+++.+++ |.+.++.+++..+|+|||.|++.+.+- | +....
T Consensus 115 glr~~a~kfgvpivGGhthpd------~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d~~----g-----~~~p~ 179 (324)
T COG2144 115 GLRKGARKFGVPIVGGHTHPD------TPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGDLD----G-----KPYPN 179 (324)
T ss_pred HHHHHHHhcCCceecCccCCC------CCCceeeeEEecccccccccccCCCCcCCEEEEEeccC----C-----CcCCC
Confidence 999999999999999998832 3455555554 556666777789999999999987531 1 00000
Q ss_pred cCCcccCCCCCchhHHHH-HhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHH
Q 016548 249 SGLSLKDQLPSENTTLGE-ALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVF 326 (387)
Q Consensus 249 ~~~~~~~~~p~~~~~~~e-~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~ 326 (387)
-++.|+..+..+ ..+ +.+.+.+.+.+. +++|+.|+|.||++++|..|+. |.+|+.+|++++|.|..+
T Consensus 180 ------~P~~wDttt~ka~~~~---~~~~e~l~e~a~--l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP~p~~v 248 (324)
T COG2144 180 ------FPLNWDTTTMKAKEKF---RAQLELLREGAK--LVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIPYPADV 248 (324)
T ss_pred ------CCccccceeeccHHHH---HHHHHHHHHHHH--HHhhcccccCccHHHHHHHHHHhhccCceeeecccCCcccc
Confidence 112233211111 111 112333333332 6899999999999999999996 999999999999999753
Q ss_pred HHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 327 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 327 ~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
|...|++.| .|+||+++++|++++++.+.+++. .++.+||+|++++-+++
T Consensus 249 ---------d~~~wlk~y-pg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~~L~i 299 (324)
T COG2144 249 ---------DFRQWLKRY-PGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRI 299 (324)
T ss_pred ---------cHHHHHHhC-CCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEEeccCceEEE
Confidence 444454433 666799999999999999999888 99999999999877654
No 31
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=3e-32 Score=262.39 Aligned_cols=249 Identities=15% Similarity=0.121 Sum_probs=185.8
Q ss_pred eEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhC--ChHHHHHHhhcCC--CC-CHHHHHHHHHHHHHHHHHc
Q 016548 104 YLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSG--AKPLFFLDYFATS--HL-EVDLAEKVIKGIVDGCQQS 178 (387)
Q Consensus 104 ~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~G--A~Pl~~ld~l~~~--~~-~~e~~~~i~~Gi~~ac~~~ 178 (387)
.+++++|...... .-+|+.+||.+|+.|+|||++|| ++|++++++|+.+ ++ ++++++++++||.++|+++
T Consensus 2 ~~a~~~~~~~~~~-----~~~p~~g~~~av~~~~~diaa~G~~a~P~~~~~~l~~~~~~p~~~~~l~~~~~gi~~a~~~~ 76 (272)
T cd02193 2 GEAMKIEEHNHPA-----AIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGHPGEDAILYDAVKGVAELCNQL 76 (272)
T ss_pred ccEEeecCCCCcc-----ccChHHHHHHHHHHHHhhhhhcCCCccceEEeeecccCCCCCCHHHHHHHHHHHHHHHhHhh
Confidence 4678888875321 23577999999999999999999 9999999988755 33 3689999999999999999
Q ss_pred CCeEEeecceeeCCc-cc--------CCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeC----CCchhhhHHHHHHHH
Q 016548 179 DCVLLGGETAEMPDF-YA--------AGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLP----SSGVHSNGFSLVRRV 245 (387)
Q Consensus 179 g~~lvGGeT~~~p~~-~~--------~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~g----s~G~~~~G~sl~~~i 245 (387)
|++++||||+.++.. |+ .....+++|++|.+++.+.+.+..+++||.|+++| ..|.++.++.. ..
T Consensus 77 g~pivgG~~s~~~~~~~~~~~~~~~~~~~p~~~vt~~G~~~~~~~~~~~~~~~Gd~I~~~g~~~~~~g~~Gs~~~~--~~ 154 (272)
T cd02193 77 GLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLGGTALAS--VA 154 (272)
T ss_pred CCcccCCEeccccceecccCCCceEEEeCCEEEEEEEEEecCcceecccCCCCCCEEEEECCCCCCCccchHHHHh--hh
Confidence 999999999976532 00 01236888999999987666678899999999997 45776654432 21
Q ss_pred HhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcH
Q 016548 246 LAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPA 324 (387)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~ 324 (387)
+....... ...+.. ..... +...+.+..+++.+.+++|||+|+|||+.+|+||+. +++|++|+++++|+++
T Consensus 155 ~~~~~~~~-~~~~~~--~~~~~-----~~~~~~~~~~~~~g~i~a~hDvs~GGL~~aL~Ema~~s~~G~~i~l~~ip~~~ 226 (272)
T cd02193 155 LSYRQLGD-KSAQVR--DPAQE-----KGFYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDE 226 (272)
T ss_pred hhhcccCC-CCCCCC--CHHHH-----HHHHHHHHHHHHCCCEEEEeeCCcchHHHHHHHHHhcCCCEEEEEeCCCcCCC
Confidence 11111111 011111 11110 112233445667788999999999999999999986 9999999999999876
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEE
Q 016548 325 VFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGE 377 (387)
Q Consensus 325 ~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~ 377 (387)
. +++|.++ +|+++.+ +|++|+|++.+++++.+++. +++++||+
T Consensus 227 ~--------~~~p~~~--~~ses~~~~l~~v~~~~~~~~~~~~~~~gi~~~~IG~ 271 (272)
T cd02193 227 P--------DMEPLEI--ALFESQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred C--------CCCHHHH--HHhhhccCeEEEECHHHHHHHHHHHhccCCCeEEecc
Confidence 3 5778776 4655543 89999999999999999887 89999996
No 32
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.93 E-value=2.3e-26 Score=241.46 Aligned_cols=291 Identities=24% Similarity=0.347 Sum_probs=225.5
Q ss_pred CCCchhhhcCcCHHHHHHHHHHHHhh--C----CCCCCceEEEecCCc-eEEEEeecCCCccccccccCChHHHHHHHHH
Q 016548 62 SEGLTYKDAGVDIDAGSELVRRIAKM--A----PGIGGFGGLFPLGDS-YLVAGTDGVGTKLELAFETGIHDTIGIDLVA 134 (387)
Q Consensus 62 ~~~~~y~~~gvdi~~~~~~v~~i~~~--~----~~~GdDaavi~~~~~-~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa 134 (387)
+++++||.+ ..+++.+... . .++|++|+++++++. .+++....= =-+..-.|+..+.-.|-
T Consensus 54 SEHC~yKss-------k~~lk~~~~t~~~~~vi~g~gdnAgvvdi~d~~~v~fKvESH-----NHPSaIePy~GAATGvG 121 (743)
T COG0046 54 SEHCSYKSS-------KSLLKMFPTTHTGEYVLSGPGDNAGVVDIGDGWAVVFKVESH-----NHPSAIEPYQGAATGVG 121 (743)
T ss_pred hhhcCccch-------HHHHhhCCCCCCCCeEEEcccCCcceEEeCCcEEEEEEeccC-----CCCCccCCCCCcccccC
Confidence 568999988 4566665543 2 389999999999865 355555532 22223346688888999
Q ss_pred HHHHHHhhhCChHHHHHHhhcCCCCCH----HHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEc
Q 016548 135 MSVNDIVTSGAKPLFFLDYFATSHLEV----DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVK 210 (387)
Q Consensus 135 ~nvnDIaa~GA~Pl~~ld~l~~~~~~~----e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~ 210 (387)
.-++|+.+|||+|++.++.|.++.++- ..+..++.||+..-.++|+|-+||++.+.+.+ ..+++ +.+.|+|.++
T Consensus 122 GiIRDv~smGArPiA~l~~l~fG~~~~~~~~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~y-~~npL-vna~~vG~i~ 199 (743)
T COG0046 122 GIIRDVLSMGARPIALLDSLRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESY-VGNPL-VNAGCVGLIR 199 (743)
T ss_pred ceeecccccCceeeeeecccccCCCCCchhhhHHhccccchhhcCccccccccceEEEEcccc-CCCce-EEEEEeeecc
Confidence 999999999999999999998776543 46677788888888889999999999999864 33455 5567999999
Q ss_pred CCCccCCCCCCCCCEEEEeCC----CchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC
Q 016548 211 KDSVVDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG 286 (387)
Q Consensus 211 ~~~~l~~~~a~~GD~Ii~~gs----~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~ 286 (387)
++++......++||.|+++|. .|+|+..++- +.+.... ....+| ..+.++.++. |...+.++++.+.+
T Consensus 200 ~~~i~~~~a~~~G~~li~~Gg~TgrDGigGat~aS--~~~~~~~--~e~dr~--aVQvGdPf~E--k~l~ea~le~~~~~ 271 (743)
T COG0046 200 KEHIVKGEAIGPGDKLILLGGKTGRDGIGGATFAS--MELGEES--EEEDRP--SVQVGDPFME--KRLQEAILECVQTG 271 (743)
T ss_pred hhheeeccCCCCCCEEEEEcCCccccccCchhhhh--hhhCcch--hhhcCC--ccccCChHHH--HHHHHHHHHHHhcC
Confidence 988887777999999999986 5666654433 2233111 112233 3455555553 44567788888889
Q ss_pred CccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHH
Q 016548 287 GVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILE 364 (387)
Q Consensus 287 ~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~ 364 (387)
.|.+++|+..|||..++.||+. .++|++|+++++|..+ -+++|+|++ .||..+ |+++|.|++.+++++
T Consensus 272 ~I~~i~DlGAgGLs~A~~Ela~~gg~G~~i~Ld~VP~rE--------~gMsp~Ei~--~SESQERMllvv~p~~~e~~~~ 341 (743)
T COG0046 272 LIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLRE--------PGMSPYEIW--LSESQERMLLVVAPEDVEEFLE 341 (743)
T ss_pred CeEEEeccCCchhhhhHHHHHhccCCeEEEEhhcCcccC--------CCCCHHHHH--HhccchheEEEEccccHHHHHH
Confidence 9999999999999999999985 8999999999999864 489999995 677766 999999999999999
Q ss_pred hhcCC-CCeEEEEEEEcCCce
Q 016548 365 GGRGG-YEAYHIGEVVNGEGV 384 (387)
Q Consensus 365 ~l~~~-~~~~vIG~V~~g~gv 384 (387)
++++. .++.+||+||+.+.+
T Consensus 342 i~~k~~l~~aVVG~vT~~~~~ 362 (743)
T COG0046 342 ICEKERLPAAVVGEVTDEPRL 362 (743)
T ss_pred HHHHcCCCeEEEEEEecCceE
Confidence 99988 999999999988544
No 33
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.1e-23 Score=218.00 Aligned_cols=261 Identities=19% Similarity=0.203 Sum_probs=192.8
Q ss_pred CCCCCceEEEecCC-----ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCC-HH
Q 016548 89 PGIGGFGGLFPLGD-----SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-VD 162 (387)
Q Consensus 89 ~~~GdDaavi~~~~-----~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~-~e 162 (387)
||.+.||||+++.. ..+++++|+......+ +|+..|+.+|+.++++|+|+||+|++++|+|+++++. +|
T Consensus 444 pG~~~DaaV~r~~~~~~~~~g~A~t~~~np~~~~l-----dpy~Ga~~aVaEa~rNl~a~Ga~pla~~d~lnfg~pe~pE 518 (743)
T COG0046 444 PGPVADAAVLRISEDSGTGKGLAMTTGENPRYALL-----DPYAGAKLAVAEALRNLAATGAKPLALTDNLNFGNPEKPE 518 (743)
T ss_pred CCCCcceEEEEecccCCCcceEEEEcCCCCcceEE-----ChhHHHHHHHHHHHHHHHhhCCcchhhhhhhccCCCCChh
Confidence 44449999999861 2599999999654332 4679999999999999999999999999999988775 33
Q ss_pred ---HHHHHHHHHHHHHHHcCCeEEeecceeeCCccc-CCceeEEEEEEEEEcC-CCccCCCCCCCCCEEEEeCCCchhhh
Q 016548 163 ---LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKK-DSVVDGKNIVPGDVLIGLPSSGVHSN 237 (387)
Q Consensus 163 ---~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~-~~~~~lsgtavG~v~~-~~~l~~~~a~~GD~Ii~~gs~G~~~~ 237 (387)
++.+.++|+.|+|+.+|+|++||+.+.+..... +-..++.++++|.+++ .+.++....+.||.|+++|..-.+..
T Consensus 519 ~~~q~~~a~~g~~eac~~l~~pvv~GnvSlynet~~~~i~PTpvi~~vg~v~dv~k~~~~~~~~~g~~i~llG~~~~~lg 598 (743)
T COG0046 519 VMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPPTPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELG 598 (743)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccceeeeeeccCCcccCCcceEEEEEEeechhhhcCccccCCCcEEEEeCCCccccc
Confidence 677889999999999999999999996642210 1123577889999985 56666666689999999999877776
Q ss_pred HHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEE
Q 016548 238 GFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIY 316 (387)
Q Consensus 238 G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id 316 (387)
|..+++-+.+. ....+|.. .+.+. +.+.+.++++++++.+.++||+|+|||+.+|.+|+- +++|++|+
T Consensus 599 gS~~~~~~~~~----~~g~~p~~--dl~~e-----k~~~~~i~~~i~~~~v~aahD~s~GGL~~aLaemaf~~~~G~~i~ 667 (743)
T COG0046 599 GSELAQVYHGL----GDGPPPVV--DLAEE-----KKFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLEID 667 (743)
T ss_pred hhHHHHHHhcc----cCCCCCCC--CHHHH-----HHHHHHHHHHHhcCceEEEEEcccccHHHHHHHHHhccCCceEEE
Confidence 66665533322 12334432 22221 235567888888899999999999999999999985 88999999
Q ss_pred cCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcC
Q 016548 317 EDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNG 381 (387)
Q Consensus 317 ~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g 381 (387)
.+..+-+ .+. ..+||+..| +|++++++++. ....... .++.+||.+...
T Consensus 668 ~~~~~~~------------~~~--~~LFsE~~gr~i~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~ 718 (743)
T COG0046 668 LDELGDD------------RLD--ALLFSESLGRVIVVVAEEEAE--VEGAEAVGVPLKVIGLVGGD 718 (743)
T ss_pred ccccccc------------chh--hHhhCcCCCcEEEEecchhhh--hhhhhhcCceeeeeeecccc
Confidence 8765432 111 236888877 88888877654 2222223 678889987644
No 34
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=99.92 E-value=3.2e-24 Score=204.08 Aligned_cols=264 Identities=20% Similarity=0.277 Sum_probs=200.7
Q ss_pred CCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcC--CCCCHHHHHHH
Q 016548 91 IGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFAT--SHLEVDLAEKV 167 (387)
Q Consensus 91 ~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~--~~~~~e~~~~i 167 (387)
.+||++|++++ +..++.|+|.+. +-.+.+++-|+.+.+..++|+.+||++|+-.+..+.+ ..++.+.++++
T Consensus 48 ~~dda~vy~ig~g~~iIsT~df~m------pivddp~dfG~IaAtNaIsDv~amgg~pi~AiAI~g~~~~~l~~~i~~ei 121 (346)
T COG0709 48 TGDDAAVYDLGNGHSIISTTDFFM------PIVDDPFDFGRIAATNAISDVFAMGGKPIMAIAILGFPNDLLDKEIAQEV 121 (346)
T ss_pred ccCcceeEEecCCcEEEEecceee------ecccCcchhhhhhhcccccchhhcCCcchhhhhhcCCcccccCHHHHHHH
Confidence 68999999996 567899999653 2356777999999999999999999999987766654 34789999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
.+|=.+.|++.++++.|||+-..|. ..|-+ .++|.+..++....+++++|+.|++|+++|...- +-+.+
T Consensus 122 ~~gg~~~~rea~i~lagGhsIdapE----P~fGl--av~G~~~~~k~~~n~~a~~G~~lilTKPlG~gil--~ta~k--- 190 (346)
T COG0709 122 IEGGRDACREAGIALAGGHSIDAPE----PIFGL--AVTGIVPTGKVKRNSTAKAGCKLILTKPLGIGIL--TTAEK--- 190 (346)
T ss_pred HHhhHHHHHHhCccccCCcccCCCC----cccce--eeecccchhhhcccccccCCcEEEEecCccccee--hhhhh---
Confidence 9999999999999999999987762 23333 4689998888888899999999999999997531 11111
Q ss_pred hcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHH
Q 016548 248 QSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 248 ~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~ 325 (387)
++ .+.+. .....+.+.+|.+ ...+++..-++++|+||||.||+++++|||. ++++++|..+++|-++.
T Consensus 191 -~~-----~L~~e~~~~ale~M~~lN~----~~~~~~~~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~lf~~~ip~l~~ 260 (346)
T COG0709 191 -KG-----LLKEEHKGLALENMCTLNK----IGAQFAPDFGVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDG 260 (346)
T ss_pred -hh-----ccCHHHHHHHHHHHhhhhH----HHHHhCccCCcceeecccCchHHHHHHHHHhhcCCcEEEeeccCCCcHH
Confidence 11 12211 1233455555543 3444555567999999999999999999997 99999999999999988
Q ss_pred HHHHHHhC-------------------CCCHHHHHHhc---CCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCC
Q 016548 326 FKWIQQAG-------------------RIEDSEMRRTF---NMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGE 382 (387)
Q Consensus 326 ~~~i~~~~-------------------~i~~~e~~~~f---n~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~ 382 (387)
.++..+.+ +++.++...+- .+| |+|+.+.++...++.+.+++. ++.+.||++.+..
T Consensus 261 ~e~~~~~g~iP~gt~~n~~s~~~~~~~~l~e~~~~lL~dpqtsg-glLiav~~~~~~~~~~i~~e~~~~~~~i~~l~~k~ 339 (346)
T COG0709 261 VEFYIENGIIPGGTARNFGSYGIFAGKDLPEEQKLLLCDPQTSG-GLLIAVVPEGKGEGLEIAPELGIQLIIIGELVAKQ 339 (346)
T ss_pred HHHHHHcCCCcCccccchhHHHHhccccccHHHHHHhcCCCCCC-ceEEEEecccccchheecchhccceehhhhHHhhc
Confidence 87766654 23333222111 344 599999888888888888877 8999999987654
No 35
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-23 Score=199.74 Aligned_cols=294 Identities=19% Similarity=0.336 Sum_probs=211.3
Q ss_pred chhhhcCcCHHH--------HHHHHHH-HHhhC--------CCCCCceEEEecCCceEEEEeecCCCccccccccCChHH
Q 016548 65 LTYKDAGVDIDA--------GSELVRR-IAKMA--------PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDT 127 (387)
Q Consensus 65 ~~y~~~gvdi~~--------~~~~v~~-i~~~~--------~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~ 127 (387)
+.|..|||---+ |+-++.+ |.++. |.--||++++++++.+++++.||+.+.+.- -|+-
T Consensus 67 l~~p~sgV~mGe~GvGSRG~GDf~VH~kl~e~~~~tga~vs~ee~DDaGvvr~~~~yivvaiDGiHSRLSe-----fPFL 141 (449)
T COG1973 67 LGYPKSGVGMGEMGVGSRGEGDFFVHEKLAELAGKTGAVVSPEELDDAGVVRIENDYIVVAIDGIHSRLSE-----FPFL 141 (449)
T ss_pred ccCCcCCCcccccccCcCcccchhHHHHHHHHHhccccccCHHHcCCCCeEEecCceEEEEecchhhhhhc-----Ccch
Confidence 556666665432 4555443 33332 345699999999999999999999766432 2557
Q ss_pred HHHHHHHHHHHHHhhhCChHHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcc-cCCceeEEEEE
Q 016548 128 IGIDLVAMSVNDIVTSGAKPLFFL-DYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFY-AAGEYDLSGFA 205 (387)
Q Consensus 128 iG~~aVa~nvnDIaa~GA~Pl~~l-d~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~-~~~~~~lsgta 205 (387)
.|+.+-..+++|+.+|||+|++++ |.-...+-|...+-.+..|+...|+..|+||++|.|-...|-+ -...+.=++-|
T Consensus 142 aGFhvtRAalRDv~vmGa~p~alisDiHlaDDgDVgklfDf~AGvtaVsea~~vPl~aGSTLRiGGDmVlGdRl~~~Vg~ 221 (449)
T COG1973 142 AGFHVTRAALRDVYVMGARPVALISDIHLADDGDVGKLFDFTAGVTAVSEAVGVPLLAGSTLRIGGDMVLGDRLVGAVGA 221 (449)
T ss_pred hhhHHHHHHHHHHHHcCcccceeeeeeeeccCcchhhhhhhhhhhhHHHHHhCCceecccceEEcCeeEeechhhcccce
Confidence 899999999999999999999988 5556777789999999999999999999999999998765311 11122223357
Q ss_pred EEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHh
Q 016548 206 VGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIST 285 (387)
Q Consensus 206 vG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~ 285 (387)
+|..+ .++-+|++++|||+|++|-..|........+.+ | +. .+.++-+.- .+++.+..++++
T Consensus 222 iGi~k-~~~t~Rr~~~~Gd~IlmTEGaGGGTi~TTAiY~-----G--m~--------DVv~ETlnv--~fi~a~eai~~s 283 (449)
T COG1973 222 IGISK-SELTPRRRAEPGDVILMTEGAGGGTIATTAIYH-----G--MH--------DVVEETLNV--DFIRACEAIVRS 283 (449)
T ss_pred eeeec-CCCChhccCCCCCEEEEecCCCCceeehhhhhc-----c--cH--------HHHHHhcCh--HHHHHHHHHHHh
Confidence 88776 678889999999999999888765433332221 1 11 122222221 234444445554
Q ss_pred C---CccEEecCCCchHhchHhhhcC-CCceEEEEcCCCC--CcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCH
Q 016548 286 G---GVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWK--VPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETS 359 (387)
Q Consensus 286 ~---~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ip--i~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~ 359 (387)
+ .||+|+|+|.||+-++..|+.+ +++++.+|.+++- +.|-+..+-+..++||.-. +-+ .+++++|++.+
T Consensus 284 ~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~sliNpkVl~MLeel~ID~lGv----SiD-slmii~ped~a 358 (449)
T COG1973 284 GLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKMLEELNIDPLGV----SID-SLMIIAPEDVA 358 (449)
T ss_pred hhhhhhhhhhhccCCcccccHHHhhhhcCeeEEEcHHHHHhhcCHHHHHHHHHcCCCcccc----ccc-eEEEecchhhh
Confidence 4 4899999999999999999987 8999999987653 3333444446678888422 122 27788899999
Q ss_pred HHHHHhhcCC-CCeEEEEEEEcC-CceEE
Q 016548 360 HTILEGGRGG-YEAYHIGEVVNG-EGVSY 386 (387)
Q Consensus 360 ~~v~~~l~~~-~~~~vIG~V~~g-~gv~~ 386 (387)
+.+.+.++.. +.+-+||+|+++ .++++
T Consensus 359 ~~v~k~~~~agvr~~~vG~Vee~~~~~~l 387 (449)
T COG1973 359 DLVKKALRGAGVRAEEVGRVEEGGQGVIL 387 (449)
T ss_pred HHHHHHHHhcCcceeEEeeeecCCcceEE
Confidence 9999999877 899999999984 66654
No 36
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.90 E-value=1.5e-22 Score=227.43 Aligned_cols=297 Identities=16% Similarity=0.089 Sum_probs=205.4
Q ss_pred CCCchhhhcC--cCH---HHHHHHHHHHHhh---C-----CCCCCceEEEecC---------------------CceEEE
Q 016548 62 SEGLTYKDAG--VDI---DAGSELVRRIAKM---A-----PGIGGFGGLFPLG---------------------DSYLVA 107 (387)
Q Consensus 62 ~~~~~y~~~g--vdi---~~~~~~v~~i~~~---~-----~~~GdDaavi~~~---------------------~~~Lv~ 107 (387)
.++++||-=. .+| +..+.+.+.|+.. . .+.+|++|+++.. +..+++
T Consensus 214 SEHCrhk~F~~~~~id~~~~~~slf~~i~~t~~~~~~~~~~~~~dNa~vi~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~ 293 (1310)
T TIGR01735 214 SEHCRHKIFNADWIIDGKKQDKSLFQMIKSTHEANPENTVSAYKDNSSVIEGHKVGRLRPDPPTRPEYRQHQEDLVHILM 293 (1310)
T ss_pred hhhcCCccCCCceeecCcccchhHHHHHHhhhhcCCCceEEEecCcEEEEEcccccccccccccccccccccccceEEEE
Confidence 4566666611 112 2234556666432 1 2578999999843 246778
Q ss_pred EeecCCCccccccccCChHHHHHHHHHHHHHHHhhh--CChHHHHHHhhcCCCCC--------------H-------HHH
Q 016548 108 GTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTS--GAKPLFFLDYFATSHLE--------------V-------DLA 164 (387)
Q Consensus 108 ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~--GA~Pl~~ld~l~~~~~~--------------~-------e~~ 164 (387)
++|.-..-. .-.|+..+.-+|...++|++++ ||+|++.+|+|.+++++ + +.+
T Consensus 294 k~Ethnhpt-----~i~Py~GAatgvgg~iRD~~a~GrGa~PiA~~d~l~fg~p~~~~~~~~~e~~~~~P~~~~~p~~Il 368 (1310)
T TIGR01735 294 KVETHNHPT-----AIAPFPGASTGAGGEIRDEGATGRGAKPKAGLTGFCVSNLNIPGLEQPWEDPFQKPERIASPLDIM 368 (1310)
T ss_pred EeccCCCCC-----ccCchhhHHHHHhHhHhChhhhCCCCeeeeeeeeeecCCCCCCCCCCccccccCCchhhccHHHHH
Confidence 887764222 2246789999999999999999 99999999999887762 1 127
Q ss_pred HHHHHHHHHHHHHcCCeEEeecceeeCCc-----------ccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCC-
Q 016548 165 EKVIKGIVDGCQQSDCVLLGGETAEMPDF-----------YAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSS- 232 (387)
Q Consensus 165 ~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~-----------~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~- 232 (387)
.+-++|++++|+++|+|+|+|+++....- ++| .+...++|.+++++ +.+...++||.|+++|..
T Consensus 369 ~e~~~G~~~~gn~~G~P~v~G~vs~f~~~~~~~~g~~~~~~~P---~~~~g~vG~i~~~~-~~~~~~~~G~~ivllGg~~ 444 (1310)
T TIGR01735 369 IEAPLGAAAFNNEFGRPNLLGYFRTFELKASLPGGQVRGYHKP---IMLAGGIGSIDAEH-IQKGEIEPGALLIVLGGPA 444 (1310)
T ss_pred HHHHHHHHHHhhhhCCcccceeeeeccccccccccccccccCC---ccEEEEEEEechhh-cccCCCCCCCEEEEECCCC
Confidence 77789999999999999999999644321 222 34456899999765 556678999999999963
Q ss_pred ---chhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHH---hCCccEEecCCCchHhchHhhh
Q 016548 233 ---GVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIS---TGGVKGIAHITGGGFTDNIPRV 306 (387)
Q Consensus 233 ---G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~---~~~v~a~~DIT~GGL~~~L~~~ 306 (387)
|+++..++-. .... .+...+....+.++..+. +...+.+...++ ++.|.++||++.|||..+|.||
T Consensus 445 ~rdglgGs~~ss~--~~g~----~~~~~~~~~Vq~gdp~~e--k~~~~~i~~~~~~~~~~~i~sihD~gaGGls~al~Em 516 (1310)
T TIGR01735 445 MLIGLGGGAASSM--VSGT----NTADLDFASVQRGNPEME--RRCQEVIDRCWQLGEKNPIISIHDVGAGGLSNALPEL 516 (1310)
T ss_pred CCCCccHHHHHHH--HhCC----CcccccCCCCCCCCHHHH--HHHHHHHHHHHHcCCCCceEEEeccCccHHHHHHHHH
Confidence 5665433321 1111 111111111111111111 111222333333 3479999999999999999999
Q ss_pred cC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCc
Q 016548 307 FP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEG 383 (387)
Q Consensus 307 ~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~g 383 (387)
+. +++|++|+++++|..+ -+++|.|+ +|||..+ |+++|+|++.+++.+++++. .++.+||+|++...
T Consensus 517 a~~~g~G~~i~L~~vp~~~--------~~m~~~ei--l~sESQeR~vl~v~~~~~~~f~~i~~~~~~~~~vIG~vt~~~~ 586 (1310)
T TIGR01735 517 IHDGGRGAVIDLRAVPLDD--------PGLSPLEI--WCNESQERYVLLVRAENLEIFTAICERERCPFAVVGTATGDGR 586 (1310)
T ss_pred HhcCCceEEEEcCCCcccC--------CCCCHHHH--hhccccccEEEEECcccHHHHHHHHHHcCCCEEEEEEECCCce
Confidence 85 8899999999998743 36788887 5899887 99999999999999999877 89999999997654
Q ss_pred eE
Q 016548 384 VS 385 (387)
Q Consensus 384 v~ 385 (387)
+.
T Consensus 587 l~ 588 (1310)
T TIGR01735 587 LT 588 (1310)
T ss_pred EE
Confidence 43
No 37
>PHA03366 FGAM-synthase; Provisional
Probab=99.88 E-value=3.6e-21 Score=216.63 Aligned_cols=245 Identities=16% Similarity=0.123 Sum_probs=183.2
Q ss_pred ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHH-HHHHhhcCCCC---C-HHHHHHHHHHHHHHHHH
Q 016548 103 SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPL-FFLDYFATSHL---E-VDLAEKVIKGIVDGCQQ 177 (387)
Q Consensus 103 ~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl-~~ld~l~~~~~---~-~e~~~~i~~Gi~~ac~~ 177 (387)
..+++++|....+..+ +|...++.+|++++++|++.|++|+ .+.+++++..+ . ...+.+.++||.|+|++
T Consensus 689 ~G~A~siGe~p~~~~l-----DP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP~~p~~~a~L~eav~ai~e~C~~ 763 (1304)
T PHA03366 689 PGTCSALGEQGYKVQL-----DPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWPPTDQAASELYRALAACKEFCRE 763 (1304)
T ss_pred CEEEEecCCCceEEEc-----CHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4588889988765433 4679999999999999999999998 77777753333 2 45899999999999999
Q ss_pred cCCeEEeecceeeCC-------cccCCceeEEEEEEEEEcC-CCccCCCCCCCCCEEEEeCCC-chhhhHHHHHHHHHhh
Q 016548 178 SDCVLLGGETAEMPD-------FYAAGEYDLSGFAVGIVKK-DSVVDGKNIVPGDVLIGLPSS-GVHSNGFSLVRRVLAQ 248 (387)
Q Consensus 178 ~g~~lvGGeT~~~p~-------~~~~~~~~lsgtavG~v~~-~~~l~~~~a~~GD~Ii~~gs~-G~~~~G~sl~~~i~~~ 248 (387)
+|+++++|+++.+.. ++++ ..|.+++++.++. .+.++....++||.|++++.. +....| |.+.+++..
T Consensus 764 LgIpIv~G~~S~yne~~~~~~~i~~p--ptIvisg~~~~~dv~k~vTp~lk~~G~~L~lIg~~~~~~LgG-S~laq~~~~ 840 (1304)
T PHA03366 764 LGVNFTFTSASSSPRQDQPPQPGPLF--NTIVFTASAPVPSSTPRLTPDLKKPGSALVHLSISPEYTLAG-SVFEQIFGL 840 (1304)
T ss_pred cCCCEeeeecccccccCCCCccccCC--CeEEEEEEEEccCcccccCcccCCCCCEEEEEeCCCCCCcch-hHHHHhhcc
Confidence 999999999997552 2333 2455666776665 467777777889999999765 444444 555555543
Q ss_pred cCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHH
Q 016548 249 SGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFK 327 (387)
Q Consensus 249 ~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~ 327 (387)
. .+.+|... . +.+ +...+.+.++++++.|.|+||+|+|||+.+|.||+- +++|++|+++.
T Consensus 841 ~----g~~~P~vd--~-~~l----k~~f~~v~~Li~~glI~A~HDVSdGGL~~ALaEMAfag~~G~~Idl~~-------- 901 (1304)
T PHA03366 841 K----SGTLPDIS--P-SYL----KNLFRAVQHLISEGLVVSGHDVSDGGLIACLAEMALAGGRGVTITVPA-------- 901 (1304)
T ss_pred c----cCCCCCCC--H-HHH----HHHHHHHHHHHHcCCeEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC--------
Confidence 2 23344321 1 111 123456777888999999999999999999999984 89999999632
Q ss_pred HHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCC
Q 016548 328 WIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGE 382 (387)
Q Consensus 328 ~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~ 382 (387)
+.++.+ .+|+|..|+|+.|++++.+++.+.+++. +.+.+||+++++.
T Consensus 902 ------~~d~~~--~LFsE~~G~VveV~~~~~~~v~~~l~~~gi~~~vIG~vt~~~ 949 (1304)
T PHA03366 902 ------GEDPLQ--FLFSETPGVVIEVPPSHLSAVLTRLRSRNIICYPIGTVGPSG 949 (1304)
T ss_pred ------CCCHHH--HHhCCCCeEEEEEchhHHHHHHHHHHHCCCCeEEEEEEcCCC
Confidence 123433 3699998999999999999999999877 8899999998753
No 38
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.88 E-value=5.4e-21 Score=214.36 Aligned_cols=243 Identities=14% Similarity=0.079 Sum_probs=181.0
Q ss_pred eEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCC---hHHHHHHhh-cCCCCC-HHHHHHHHHHHHHHHHHc
Q 016548 104 YLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGA---KPLFFLDYF-ATSHLE-VDLAEKVIKGIVDGCQQS 178 (387)
Q Consensus 104 ~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA---~Pl~~ld~l-~~~~~~-~e~~~~i~~Gi~~ac~~~ 178 (387)
.++++++....+..+ +++..+..+|+.++++|++.|+ +|+++++.+ .|.+++ ..++.+.++++.++|+++
T Consensus 594 G~a~a~Ge~p~~~~~-----DP~~ga~~AV~Ea~~Nlaaa~~~~l~pi~lt~n~~~P~~~~~~~~L~~av~ai~e~C~~L 668 (1202)
T TIGR01739 594 CVCSALGEQTYKVQA-----DPKRGATYAITEALLNLSLSPWNTLEDVIITLSVTWSPTDHVYSLLKDALRACKDFCEEL 668 (1202)
T ss_pred EEEEecCCCceEEEc-----CHHHHHHHHHHHHHHHHHhCCccccCCcEEEEEecCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 467777777544333 4678999999999999999998 999999866 466665 679999999999999999
Q ss_pred CCeEEeecceeeCC---cccCCceeEEEEEEEEEcC-CCccCCCCCCCCCEEEEeCCCc-hhhhHHHHHHHHHhhcCCcc
Q 016548 179 DCVLLGGETAEMPD---FYAAGEYDLSGFAVGIVKK-DSVVDGKNIVPGDVLIGLPSSG-VHSNGFSLVRRVLAQSGLSL 253 (387)
Q Consensus 179 g~~lvGGeT~~~p~---~~~~~~~~lsgtavG~v~~-~~~l~~~~a~~GD~Ii~~gs~G-~~~~G~sl~~~i~~~~~~~~ 253 (387)
|++++||+++.+.+ +..| ...+.+++++.++. .+.++....++||.|++++..+ ....| |.+.+++...+
T Consensus 669 gipiv~G~~S~s~~~~~v~~P-tptivisa~a~v~dv~k~vTp~lk~~G~~L~LIg~t~~~~LgG-S~laq~~~~~~--- 743 (1202)
T TIGR01739 669 GVSFTVTSAASSPTQDSGSAP-FMSIVFSASCPVLLSAKKITPDLKSHGSHLIWLSLHPSYTLAG-SIFEQILGLSF--- 743 (1202)
T ss_pred CCcEEeeeccccCCCCCccCC-CCeEEEEEEEEecCHHhCcCcccCCCCCEEEEEcCCCCCCchH-hHHHHhhcccc---
Confidence 99999999987543 1111 02455666776653 5677777778999999987654 33334 45555554322
Q ss_pred cCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHh
Q 016548 254 KDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQA 332 (387)
Q Consensus 254 ~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~ 332 (387)
+.+|........ ...+.+.++++++.|.++||+|+|||+.+|+||+- +++|++|+++.
T Consensus 744 -~~~P~vd~~~lk-------~~~~~v~~li~~glI~S~HDvSdGGL~~aLaEMA~ag~~G~~Idl~~------------- 802 (1202)
T TIGR01739 744 -IRLPALSPVSLK-------KLLSALQTLVKEGVIVSGHDVSDGGLVACVAEMALSGGKGVRITLPH------------- 802 (1202)
T ss_pred -CCCCCCCHHHHH-------HHHHHHHHHHhcCCEEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC-------------
Confidence 233421111111 12345667778899999999999999999999985 89999999642
Q ss_pred CCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEc
Q 016548 333 GRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVN 380 (387)
Q Consensus 333 ~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~ 380 (387)
.++|+++ +|+|..|+|+.|++++.+++++.+++. +++.+||+|++
T Consensus 803 -~~~p~~~--LFSEs~G~VieV~~~~~~~v~~~l~~~gi~~~vIG~vt~ 848 (1202)
T TIGR01739 803 -GTDPLEF--LCSETPGVVIEVDPSSMYAVLQFLRSEGLVFQVIGRVGE 848 (1202)
T ss_pred -CCCHHHH--HhCCCCcEEEEEchhHHHHHHHHHHHCCCCeEEEEEECC
Confidence 1355554 699888899999999999999999877 88999999985
No 39
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.87 E-value=1.1e-21 Score=221.16 Aligned_cols=244 Identities=16% Similarity=0.086 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHHHHHHhhh--CChHHHHHHhhcCCCCC------H---------------HHHHHHHHHHHHHHHHcCCe
Q 016548 125 HDTIGIDLVAMSVNDIVTS--GAKPLFFLDYFATSHLE------V---------------DLAEKVIKGIVDGCQQSDCV 181 (387)
Q Consensus 125 ~~~iG~~aVa~nvnDIaa~--GA~Pl~~ld~l~~~~~~------~---------------e~~~~i~~Gi~~ac~~~g~~ 181 (387)
|+..+.-.+-..++|+.+| ||+|++-++.+.+++++ + +.+.+-+.||+++|+++|+|
T Consensus 300 Pf~GAaTG~GG~iRD~~~~G~Ga~piag~~~~~~~~l~~~~~~~~~e~~~~~P~~~~~p~~i~~~~~~Gis~~gn~~G~P 379 (1290)
T PRK05297 300 PFPGAATGSGGEIRDEGATGRGSKPKAGLTGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRP 379 (1290)
T ss_pred CCCcccccCCceeccccccCCCCeeeecceeEEecCCCCCCCCCccccccCCccccCCHhHhhhhccccHHHHhhhhCCC
Confidence 5578888899999999999 99999999876544431 2 36677777999999999999
Q ss_pred EEeecceeeCCcccC--------CceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCC----chhhhHHHHHHHHHhhc
Q 016548 182 LLGGETAEMPDFYAA--------GEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSS----GVHSNGFSLVRRVLAQS 249 (387)
Q Consensus 182 lvGGeT~~~p~~~~~--------~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~----G~~~~G~sl~~~i~~~~ 249 (387)
++||+++.+..-+.. ....+.+.++|.+++++++ +...++||.|+++|.. |+++.-++. ......
T Consensus 380 vv~G~Vs~yne~~~~~~~~~~~~i~P~~~vg~vG~i~~~~~~-~~~~~~Gd~IvllG~~~~rdglgGs~~ss--~~~g~~ 456 (1290)
T PRK05297 380 NLLGYFRTFEQKVNSHNEEVRGYHKPIMLAGGIGNIRADHVQ-KGEIPVGAKLIVLGGPAMRIGLGGGAASS--MASGQS 456 (1290)
T ss_pred ccceEEEEEeccccCccccccccccceEEEEEEEEEehhhcc-ccCCCCCCEEEEECCCCCCCCccHHHHHH--HHhccc
Confidence 999999866543311 0123555699999986665 4457999999999973 555432222 111111
Q ss_pred CCccc-CCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHH
Q 016548 250 GLSLK-DQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFK 327 (387)
Q Consensus 250 ~~~~~-~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~ 327 (387)
..++. ...+... ...+..+ ...++...++...+.|++|||+|.|||+.+|.||+. +++|++||++++|+.+.
T Consensus 457 ~~~~~~~~Vq~~d-~~~ek~~---~~~i~~~~~~~~~~lI~s~hDvgaGGLa~AL~Ema~~~g~G~~idL~~vp~~~~-- 530 (1290)
T PRK05297 457 SEDLDFASVQRGN-PEMERRC---QEVIDRCWQLGDDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKIPNDEP-- 530 (1290)
T ss_pred ccccccCCCCcCC-HHHHHHH---HHHHHHHHHhcccCCeeEEecCCccHHHHHHHHHHHhcCceEEEEeCCCccccC--
Confidence 11111 1122111 1111100 001222222222478999999999999999999985 89999999999998643
Q ss_pred HHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 328 WIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 328 ~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
+++|+|+ +|||..+ |+++|+|++.+++.+.+++. +++.+||+|++++.+.
T Consensus 531 ------~l~p~ei--l~SESQeRmlv~V~~e~~e~~~~i~~~~~l~~~vIG~vt~~~~l~ 582 (1290)
T PRK05297 531 ------GMSPLEI--WCNESQERYVLAIAPEDLELFEAICERERCPFAVVGEATEERHLT 582 (1290)
T ss_pred ------CCCHHHH--HhccccceEEEEEcchhHHHHHHHHHhcCCCEEEEEEEeCCCeEE
Confidence 6788887 5888876 99999999999999999877 8999999999765554
No 40
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.86 E-value=4.4e-20 Score=207.67 Aligned_cols=257 Identities=15% Similarity=0.057 Sum_probs=184.1
Q ss_pred CCceEEEecC---CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhh-c----CCCCC-HH
Q 016548 92 GGFGGLFPLG---DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYF-A----TSHLE-VD 162 (387)
Q Consensus 92 GdDaavi~~~---~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l-~----~~~~~-~e 162 (387)
+.|++|+++. ...++++.+....+.. -+++..|+.||+++++||+++|++|+..++++ + ++++. .+
T Consensus 692 ~aDaaV~~~~~~~~~G~ama~G~~P~~~~-----idP~~gA~~AV~EAl~NlaaaG~~~l~~i~~s~Nwm~~~~~pge~~ 766 (1310)
T TIGR01735 692 LADVAVTAASFDTYTGEAMAIGERPPKAL-----LDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGEDA 766 (1310)
T ss_pred CcCeEEEEecCCCceEEEEEEcCCCCeec-----cCHHHHHHHHHHHHHhheeecCCcCHHHccccccchhhcCCCCCHH
Confidence 7899999984 2356777776654422 24679999999999999999999999888766 3 55553 56
Q ss_pred HHHHHHHHHHHHHHHcCCeEEeecceeeC-------CcccC--CceeEEEEEEEEEcC-CCccCCCCCCCC-CE--EEE-
Q 016548 163 LAEKVIKGIVDGCQQSDCVLLGGETAEMP-------DFYAA--GEYDLSGFAVGIVKK-DSVVDGKNIVPG-DV--LIG- 228 (387)
Q Consensus 163 ~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p-------~~~~~--~~~~lsgtavG~v~~-~~~l~~~~a~~G-D~--Ii~- 228 (387)
.+.+.++++.++|+++|++++||+++.+. +.+.. .+.++..|++|.+++ .+.++....++| |. |++
T Consensus 767 ~l~~av~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~PpTlvisA~g~v~Dv~k~vTp~lk~~ggd~~Li~i~ 846 (1310)
T TIGR01735 767 ALYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAPVPDVRKTVTPDLKHDKGDSHLLLVD 846 (1310)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCcCccccCCCcEEEEEEEecCHhhccChhhccCCCCceEEEEE
Confidence 78999999999999999999999997641 10000 023567789999984 577777777785 64 443
Q ss_pred eCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC
Q 016548 229 LPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP 308 (387)
Q Consensus 229 ~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~ 308 (387)
++..-....| |.+.+++.. +...+|... .+ +.+ +.+.+.+..+++++.|++|||+|+|||+.+|+||+-
T Consensus 847 lg~~~~~LGG-S~laq~~~~----~g~~~P~vd-~~-~~l----k~~f~~i~~li~~glV~A~HDvSdGGL~~aLaEMAf 915 (1310)
T TIGR01735 847 LGPGKNRLGG-SALAQVFGQ----LGGDCPDLD-DP-ERL----KAFFAVMQGLVAEGLLLAYHDRSDGGLVTTLLEMAF 915 (1310)
T ss_pred ccCCcccchH-HHHHHHhcc----ccCCCCCCC-cH-HHH----HHHHHHHHHHHHcCCeEEEeeCCcChHHHHHHHHHH
Confidence 4543223333 444445543 223344210 01 111 123345667778899999999999999999999985
Q ss_pred -CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEE
Q 016548 309 -KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVV 379 (387)
Q Consensus 309 -s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~ 379 (387)
+++|++|+.++++..+ . ..+|++..|+|+.|++++.+++++.+++. +++.+||.++
T Consensus 916 ag~~G~~Idl~~i~~~~-------------~--~~LFsEs~G~VieV~~e~~~~v~~~l~~~Gi~~~viGig~ 973 (1310)
T TIGR01735 916 AGHCGLDVDLDALGDSL-------------F--AVLFNEELGAVIQVAKPDLAAVLELLRAAGLTALILGIGT 973 (1310)
T ss_pred hCCCcEEEEeCCCCCcH-------------H--HHHhCCCCcEEEEEehHHHHHHHHHHHhCCCceEEEEEEE
Confidence 8999999988765432 1 23688988999999999999999999877 8888888654
No 41
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.85 E-value=1.5e-19 Score=202.20 Aligned_cols=262 Identities=15% Similarity=0.052 Sum_probs=192.8
Q ss_pred CCCceEEEecC---CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCC-------C-
Q 016548 91 IGGFGGLFPLG---DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-------L- 159 (387)
Q Consensus 91 ~GdDaavi~~~---~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~-------~- 159 (387)
++.|++|++.. ...+++++|.......+ +++..|+.||++++++|++ |.|..+.|++++.| +
T Consensus 683 p~aD~aV~~~~~~~~~g~a~s~G~~p~~~~~-----dp~~ga~~AV~Ea~~Nlva--a~~~~l~di~~s~nw~~~~~~p~ 755 (1307)
T PLN03206 683 PLADVAVIAQTHTGLTGGACAIGEQPIKGLV-----DPKAMARLAVGEALTNLVW--AKVTALSDVKASGNWMYAAKLDG 755 (1307)
T ss_pred CCcceeEEEEeCCCCeEEEEEecCCCceeee-----CHHHHHHHHHHHHHhHhhc--cCCCcHHHeEEEcChhHhhcCCC
Confidence 46899999865 35689999998755333 4679999999999999999 77777888777666 3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcc-----cCCceeEEEEEEEEEcC-CCccCCCCCCCCCEEEE---eC
Q 016548 160 EVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFY-----AAGEYDLSGFAVGIVKK-DSVVDGKNIVPGDVLIG---LP 230 (387)
Q Consensus 160 ~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~-----~~~~~~lsgtavG~v~~-~~~l~~~~a~~GD~Ii~---~g 230 (387)
+++.+.+-++|+.++|+++|+|++||..+.+.... -+.+.+|.++++|.+++ .+.++..-.++||.|++ +|
T Consensus 756 ~~~~l~~av~g~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P~TLvIs~~~~v~Dv~~~vtp~lK~~G~~vlL~idlG 835 (1307)
T PLN03206 756 EGADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAPGNLVISAYVTCPDITKTVTPDLKLGDDGVLLHVDLG 835 (1307)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCeecCCCCCCCCCCCcCCCCCEEEEEEEEcCCcccCcChhhcCCCCEEEEEEecC
Confidence 35788999999999999999999999998654221 01123567788999885 56777665568998888 66
Q ss_pred CCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-C
Q 016548 231 SSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-K 309 (387)
Q Consensus 231 s~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s 309 (387)
.......|..+ .+.+.. .....|... .+ +.+ +...+.+.++++++.|.++||+|+|||+.+|+||+- +
T Consensus 836 ~~~~~LGGS~~-~q~~~~----~g~~~Pdv~-d~-~~l----K~~f~av~~Li~~glV~A~HDvSdGGL~~ALaEMAfag 904 (1307)
T PLN03206 836 KGKRRLGGSAL-AQAYDQ----IGDDCPDLD-DV-AYL----KKAFEATQDLIAKRLISAGHDISDGGLVVTLLEMAFAG 904 (1307)
T ss_pred CCCcCccccHH-HHHhCc----cCCCCCCCC-CH-HHH----HHHHHHHHHHHHCCCeeEEEeCCcCHHHHHHHHHHhhc
Confidence 54444444444 333332 223344310 11 111 224456788888999999999999999999999985 8
Q ss_pred CceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 310 GLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 310 ~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
++|++|+++..+. ++. ..+|++..|+|+.|++++.+++++.+++. +++.+||+++++..+.
T Consensus 905 ~~G~~Idl~~~~~-------------~~~--~~LFsEs~G~VieV~~e~~~~v~~~l~~~gi~~~vIG~vt~~~~i~ 966 (1307)
T PLN03206 905 NCGINVDLPSSGH-------------SAF--ETLFAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQVTASPLIE 966 (1307)
T ss_pred CCcEEEEeCCccc-------------hHH--HHHhCCCccEEEEEehhHHHHHHHHHHHCCCCeEEEEEECCCCeEE
Confidence 9999999754221 122 23689998999999999999999999877 8999999998765544
No 42
>KOG3939 consensus Selenophosphate synthetase [Signal transduction mechanisms]
Probab=99.84 E-value=8.3e-20 Score=167.83 Aligned_cols=269 Identities=19% Similarity=0.215 Sum_probs=184.6
Q ss_pred ceEEEecC--CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHH-HHHhhc-CCCCCH----HHHH
Q 016548 94 FGGLFPLG--DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF-FLDYFA-TSHLEV----DLAE 165 (387)
Q Consensus 94 Daavi~~~--~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~-~ld~l~-~~~~~~----e~~~ 165 (387)
||.|+.+. +..||.+||.+. +..++|+-.|+.+.+..+||++|||.+-.- ++..|. .-++++ ..+-
T Consensus 2 d~~viplrh~gl~lvqttdffy------p~vddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~p 75 (312)
T KOG3939|consen 2 DCCVIPLRHGGLLLVQTTDFFY------PLVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIP 75 (312)
T ss_pred CceEEeeccCCeEEEEeeceee------eccCChHHhhHHHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhchhhH
Confidence 78999875 557899999874 336889999999999999999999998753 223333 223332 2556
Q ss_pred HHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhh--hHHHHHH
Q 016548 166 KVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHS--NGFSLVR 243 (387)
Q Consensus 166 ~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~--~G~sl~~ 243 (387)
-+++|+.+++++.|.++.||.|...|. ..+.|.+.-+....+++..+++.|||+++++++.|... |...++.
T Consensus 76 l~~~gfkdaa~e~gt~v~ggqtv~npw------~~igGVatsVcq~ne~i~pdnAvpGdvlvLTkplg~qvAv~~h~wi~ 149 (312)
T KOG3939|consen 76 LIIQGFKDAAEEAGTPVTGGQTVINPW------CIIGGVATSVCQPNEIIMPDNAVPGDVLVLTKPLGGQVAVNAHQWID 149 (312)
T ss_pred HHHHHhHHHHHhcCCceecCeeecCcc------eeeccccccccCccceecccCCCCcceEEEeccCCceeehHHHHHHh
Confidence 789999999999999999999998763 34555555556667888889999999999999999873 3333332
Q ss_pred HHHhhcCCcccCCCCCc--hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhc---CCCceEEEEcC
Q 016548 244 RVLAQSGLSLKDQLPSE--NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVF---PKGLGAVIYED 318 (387)
Q Consensus 244 ~i~~~~~~~~~~~~p~~--~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~---~s~~g~~Id~~ 318 (387)
+.-++- ..+.-..+.. ...+.++.. |....-+....++.+..+|+.+|||+.||+++...++ +.++.+.|+
T Consensus 150 ~~~ek~-~~~~l~vs~~die~ay~~a~~-~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i~-- 225 (312)
T KOG3939|consen 150 NQPEKW-NKLKLEVSDEDIEKAYEEAMK-SMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQIH-- 225 (312)
T ss_pred cCccee-eeeeeeecHHHHHHHHHHHHh-hhhhhchhhhhhhhhccccccccccccchhhhHHHHHHHhhccceeeec--
Confidence 111110 0111123311 122333322 2211222334455667899999999999998766665 467777775
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhc------CCCeeEEEEEeccCHHHHHHhhcCC--C--CeEEEEEEEcCCc
Q 016548 319 SWKVPAVFKWIQQAGRIEDSEMRRTF------NMGIGMVLVVSKETSHTILEGGRGG--Y--EAYHIGEVVNGEG 383 (387)
Q Consensus 319 ~ipi~~~~~~i~~~~~i~~~e~~~~f------n~G~gll~~v~~e~~~~v~~~l~~~--~--~~~vIG~V~~g~g 383 (387)
++|+-.-..++.+..| +|+++. ..| |+|+..|.|.+.+++..+++. . .+|+||.|++++.
T Consensus 226 ~LPiI~km~~vska~G----~~f~l~qGts~ETsG-GlLIclP~eqaakfcaei~s~k~gegqAWIIGiVekgn~ 295 (312)
T KOG3939|consen 226 KLPIIAKMAEVSKACG----NMFKLRQGTSAETSG-GLLICLPREQAAKFCAEIKSPKNGEGQAWIIGIVEKGNS 295 (312)
T ss_pred cChhhhhHHHHHHhcc----ccceeccCCCccCCC-ceEEEccHHHHHHHHHHhcCCccCCCceEEEEEEecCCc
Confidence 7888776666665544 222222 233 599999999999999888763 3 4999999998764
No 43
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.84 E-value=2.1e-19 Score=202.81 Aligned_cols=264 Identities=13% Similarity=0.064 Sum_probs=186.2
Q ss_pred CCceEEEecC---CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChH---HHHHH-hh-cCCCCC-HH
Q 016548 92 GGFGGLFPLG---DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKP---LFFLD-YF-ATSHLE-VD 162 (387)
Q Consensus 92 GdDaavi~~~---~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~P---l~~ld-~l-~~~~~~-~e 162 (387)
+.|++|+++. ...++++.+....+..+ +++..|+.||+++++||+++|+.+ +.++. .+ .++++. ..
T Consensus 672 ~~DaaV~~~~~~~~~g~ama~G~~P~~~~~-----dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N~~~~~~~p~~~a 746 (1290)
T PRK05297 672 VADCAVTAASYDGYAGEAMAMGERTPVALL-----DAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGEDA 746 (1290)
T ss_pred CCCeEEEEecCCCCeEEEEEEcCCCCeecc-----CHHHHHHHHHHHHHhhheecCCccccceEEEEEEeccCCCCchHH
Confidence 6799999973 45678888877644322 467999999999999999999877 33332 22 246654 46
Q ss_pred HHHHHHHHHH-HHHHHcCCeEEeecceeeC-CcccCC--------ceeEEEEEEEEEcC-CCccCCCCC-CCCCEEEEe-
Q 016548 163 LAEKVIKGIV-DGCQQSDCVLLGGETAEMP-DFYAAG--------EYDLSGFAVGIVKK-DSVVDGKNI-VPGDVLIGL- 229 (387)
Q Consensus 163 ~~~~i~~Gi~-~ac~~~g~~lvGGeT~~~p-~~~~~~--------~~~lsgtavG~v~~-~~~l~~~~a-~~GD~Ii~~- 229 (387)
.+.+.++++. ++|+++|++++||+.+-+. .-|+++ +.++..+++|.+++ .+.++.... .+|+.|+++
T Consensus 747 ~L~~av~a~~~e~c~~LgipiigGkdSmS~~t~yne~~~~~~v~iPpTlvisa~g~v~dv~~~vTp~lkk~~g~~l~lI~ 826 (1290)
T PRK05297 747 RLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQLRTDKDTALLLID 826 (1290)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccchhcCCccccccCCCCCcceeCCccEEEEEEEecCcccccCcccccCCCCEEEEEE
Confidence 8899999999 9999999999999976421 111110 12466789999986 677777654 678888887
Q ss_pred -CCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC
Q 016548 230 -PSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP 308 (387)
Q Consensus 230 -gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~ 308 (387)
+..-... |-|.+.+++.. +...+|.. ..+... +.+.+.+..+++++.|++|||+|+|||+.+|+||+-
T Consensus 827 lg~~~~~l-GGS~laq~~~~----~g~~~P~v-~d~~~l-----k~~~~~v~~li~~glv~S~HDvSdGGL~~aLaEMAf 895 (1290)
T PRK05297 827 LGRGKNRL-GGSALAQVYNQ----LGDKAPDV-DDAEDL-----KGFFNAIQALVAEGLLLAYHDRSDGGLLTTLAEMAF 895 (1290)
T ss_pred CCCCcccc-hHhHHHHHhhh----hcCCCCCC-CCHHHH-----HHHHHHHHHHHHcCCEEEEEeCCcCHHHHHHHHHHh
Confidence 3322223 33444444433 23345530 011111 123445667778899999999999999999999985
Q ss_pred -CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-C--CeEEEEEEEcCCce
Q 016548 309 -KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-Y--EAYHIGEVVNGEGV 384 (387)
Q Consensus 309 -s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~--~~~vIG~V~~g~gv 384 (387)
+++|++|+.+++|.. +. ..+|++..|+|+.|++++.+++.+.+++. + ++.+||+|++++.+
T Consensus 896 a~~~G~~Idl~~i~~~-------------~~--~~LFsE~~G~vveV~~~~~~~v~~~l~~~gi~~~~~~IG~vt~~~~l 960 (1290)
T PRK05297 896 AGHCGLDIDLDALGDD-------------AL--AALFNEELGAVIQVRAADRDAVEAILAEHGLSDCVHVIGKPNAGDRI 960 (1290)
T ss_pred hCCCcEEEEeCCCCch-------------HH--HHHhCCCceEEEEEehHHHHHHHHHHHHcCCCCCCeEEEEECCCceE
Confidence 899999998876521 11 23599998999999999999999998876 7 89999999876554
Q ss_pred EE
Q 016548 385 SY 386 (387)
Q Consensus 385 ~~ 386 (387)
.+
T Consensus 961 ~I 962 (1290)
T PRK05297 961 VI 962 (1290)
T ss_pred EE
Confidence 43
No 44
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=99.82 E-value=3.9e-21 Score=156.65 Aligned_cols=94 Identities=29% Similarity=0.450 Sum_probs=86.0
Q ss_pred CCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHHHH
Q 016548 92 GGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKVIK 169 (387)
Q Consensus 92 GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i~~ 169 (387)
||||||++++ ++.+++++|++.++.|+. ..+|+.+||++|++|+|||++|||+|+++++++. ++..++++++++++
T Consensus 1 GdDaavi~~~~~~~~~~~~d~~~~~~~~~--~~~p~~~g~~av~~~~sDl~a~Ga~P~~~~~~l~~~~~~~~~~l~~~~~ 78 (96)
T PF00586_consen 1 GDDAAVIRIPDGKRLVVSTDGFGTSVHFA--FMDPYDGGWKAVAEALSDLAAMGAKPLAILDSLGLPNPESPEELKEIVK 78 (96)
T ss_dssp TSSSEEEEETSTEEEEEEEEEEETHHHHH--TCTHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEESTTSBHHHHHHHHH
T ss_pred CCceEEEEcCCCCeEEEEEEeccCccccc--ccCHHHHHHHHHHHHHHHHHhcCCeeeEEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999998 889999999999998887 3368899999999999999999999999999886 55568999999999
Q ss_pred HHHHHHHHcCCeEEeecc
Q 016548 170 GIVDGCQQSDCVLLGGET 187 (387)
Q Consensus 170 Gi~~ac~~~g~~lvGGeT 187 (387)
|+.++|+++|++++||||
T Consensus 79 Gi~~~~~~~g~~ivGG~T 96 (96)
T PF00586_consen 79 GIAEACREFGIPIVGGDT 96 (96)
T ss_dssp HHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHhCCcEeCcCC
Confidence 999999999999999998
No 45
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=99.80 E-value=5.4e-19 Score=154.96 Aligned_cols=146 Identities=25% Similarity=0.388 Sum_probs=107.5
Q ss_pred CCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHh-CCccEEecCCCchH
Q 016548 221 VPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIST-GGVKGIAHITGGGF 299 (387)
Q Consensus 221 ~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~-~~v~a~~DIT~GGL 299 (387)
||||.|+++|+.|.+++++.+.++...... .|. ...+....|.+. .....+... +.+++|+|||+|||
T Consensus 1 k~GD~i~~~g~~G~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~--~~~~~~~~~~~~i~a~~DvSdGGL 69 (153)
T PF02769_consen 1 KPGDLIIVTGSLGLGGSGLLAARKGGESGG------LPD---PLVDAELEPPLL--YAVRALAALKGLIHAAHDVSDGGL 69 (153)
T ss_dssp STTEEEEEECSSSHCHHHHHHHHHTHHHTT------HHH---CHHHHHHHHHHH--HHHHHHHHHHTTEEEEEEESTTHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHhCccccc------cch---hhhhHHhhHHHH--HHHHHhhhhhcceEEEEecCCchH
Confidence 799999999999999999766554322211 110 133333333322 233344443 89999999999999
Q ss_pred hchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-C-CeEEEE
Q 016548 300 TDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-Y-EAYHIG 376 (387)
Q Consensus 300 ~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~-~~~vIG 376 (387)
+.+|+||+. |++|++|+.+.+|+.+... ++.+++..+++|. +++++++++.+++++.+++. + .+++||
T Consensus 70 ~~~l~em~~~s~~g~~i~~~~~p~~~~~~--------~~~~~l~~~~~g~-~l~~v~~~~~~~~~~~~~~~g~~~~~~IG 140 (153)
T PF02769_consen 70 AGALAEMAEASGVGAEIDLDKIPLSDELQ--------SPLEMLFSESEGR-LLVAVPPEDAEEFLAALKKAGIPNATVIG 140 (153)
T ss_dssp HHHHHHHHHCTTEEEEEEGGGSHHHHHHH--------HHHHHHHHSSSTE-EEEEEEGGGHHHHHHHHHHTTCTTEEEEE
T ss_pred HHHHHHHHHhCCcceEEccccchhhhhhh--------hhhhhhccCCCCC-EEEEEcHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999999996 8999999998665544432 4567777788884 88888888889999999887 7 599999
Q ss_pred EEEcCCceEE
Q 016548 377 EVVNGEGVSY 386 (387)
Q Consensus 377 ~V~~g~gv~~ 386 (387)
+|++++++++
T Consensus 141 ~V~~~~~~~v 150 (153)
T PF02769_consen 141 EVTEGPGLTV 150 (153)
T ss_dssp EEESSSSEEE
T ss_pred EEEcCCCEEE
Confidence 9999987654
No 46
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.72 E-value=5.5e-18 Score=189.85 Aligned_cols=241 Identities=13% Similarity=0.070 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHHHHHhhh--CChHHHHHHhhcCCCCC----------------------HHHHHHHHHHHHHHHHHcCC
Q 016548 125 HDTIGIDLVAMSVNDIVTS--GAKPLFFLDYFATSHLE----------------------VDLAEKVIKGIVDGCQQSDC 180 (387)
Q Consensus 125 ~~~iG~~aVa~nvnDIaa~--GA~Pl~~ld~l~~~~~~----------------------~e~~~~i~~Gi~~ac~~~g~ 180 (387)
|+..+.-.+-..++|+.+| ||+|++.++.+.+++++ ...+.+.+.|+++.-.++|+
T Consensus 303 Pf~GAATGvGG~IRD~~a~GrGa~PiA~l~~~~~g~l~~~g~~~p~e~~~~~~p~~l~~~~~I~~~~~~G~s~YGN~~G~ 382 (1307)
T PLN03206 303 PYPGAETGAGGRIRDTHATGRGSFVVAGTAGYCVGNLRIEGSYAPWEDSSFVYPSNLASPLQILIDASNGASDYGNKFGE 382 (1307)
T ss_pred CCCcccccCCceeecccccCCCceeeecceeEEecCCCCCCCcCccccccccCcccCCCHhHHhhccCCccccCCcccCC
Confidence 4577888899999999999 99999999977655432 23556677888888889999
Q ss_pred eEEeecce-eeC--------CcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCC----CchhhhHHHHHHHHHh
Q 016548 181 VLLGGETA-EMP--------DFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLA 247 (387)
Q Consensus 181 ~lvGGeT~-~~p--------~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs----~G~~~~G~sl~~~i~~ 247 (387)
|.++|++. +.+ ++++| + +.+.++|.++++++.. ...++||.|+++|. .|+|++.+|-. .+.
T Consensus 383 P~v~G~~~~F~~~~~~g~~~~~~kP--i-m~ag~vG~~~~~~v~k-~~~~~G~~vv~lGG~tgRdGigGat~SS~--~~~ 456 (1307)
T PLN03206 383 PLIQGYTRTFGMRLPNGERREWLKP--I-MFSGGIGQIDHTHLTK-GEPDIGMLVVKIGGPAYRIGMGGGAASSM--VSG 456 (1307)
T ss_pred cccCcEEEEeccccccccccccCCC--c-eEEEEEEEEcHHHccc-CCCCCCCEEEEECCCcccccccchhhhhh--hhC
Confidence 99999985 222 33344 3 4456899999876654 45999999999775 67777655542 222
Q ss_pred hcCCcccCCCCCchhHHHHHhcccc-hhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHH
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPT-VIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVF 326 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~-~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~ 326 (387)
.. +....++ ..+.++..+.-. ...++.++++...+.|.+++|...|||..++.||+.. .|++||++++|..+
T Consensus 457 ~~--s~~~d~~--aVQ~GnP~~Ekklq~vi~ac~e~~~~~~I~~i~D~GAGGls~a~~Ela~~-~G~~i~Ld~Vp~~e-- 529 (1307)
T PLN03206 457 QN--DAELDFN--AVQRGDAEMSQKLYRVVRACVEMGEDNPIVSIHDQGAGGNCNVVKEIIYP-KGAEIDIRAVVVGD-- 529 (1307)
T ss_pred Cc--cccccCC--ccccCCHHHHHHHHHHHHHHHHhhcCCCEEEEEecCCchHHHhHHHHhhc-CceEEEhhhCcCCC--
Confidence 11 1111222 234444433210 0124445566666789999999999999999999854 89999999999864
Q ss_pred HHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 327 KWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 327 ~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
-+++|.|++ .||..+ |+++|+|++.+++.+++++. .++++||+||+...+++
T Consensus 530 ------~gmsp~EI~--~SESQERm~l~V~p~~~~~f~~i~~re~~~~~vVG~vT~~~rl~v 583 (1307)
T PLN03206 530 ------HTLSVLEIW--GAEYQEQDALLIKPESRDLLQSICDRERCSMAVIGTIDGSGRVVL 583 (1307)
T ss_pred ------CCCCHHHHH--HhHHhhhheeeECcccHHHHHHHHHHcCCCeEEEEEEecCCeEEE
Confidence 389999985 577766 99999999999999999888 99999999998866543
No 47
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.66 E-value=5.1e-15 Score=165.14 Aligned_cols=225 Identities=14% Similarity=0.117 Sum_probs=163.2
Q ss_pred CceEEEecC------CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCC-----CC-
Q 016548 93 GFGGLFPLG------DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH-----LE- 160 (387)
Q Consensus 93 dDaavi~~~------~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~-----~~- 160 (387)
.||+|++++ +..++++.|.......+ +|+..++.||++++++|+|+|++|..+ +|++++ ++
T Consensus 677 ~DaaV~~~~~~~g~t~~g~ams~g~nP~~~~~-----dPy~ga~~AV~EA~rNlva~G~~~~~i--~Lnf~~~F~k~p~~ 749 (1239)
T TIGR01857 677 TEASVAKLPVLGGETHTASAIAWGFNPYIAEW-----SPYHGAAYAVIESLAKLVAAGADYKKA--RLSFQEYFEKLDKD 749 (1239)
T ss_pred cceEEEEeeccCCCCCeEEEEEecCCCceecc-----CHHHHHHHHHHHHHhhhheeCCcHHHE--EEecccccccCCCC
Confidence 699999864 24689999998654322 467999999999999999999999876 554333 21
Q ss_pred H---HHHHHHHHHHHHHHHHcCCeEEeecceeeCCccc-CCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhh
Q 016548 161 V---DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHS 236 (387)
Q Consensus 161 ~---e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~-~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~ 236 (387)
+ .++.+-+.|+.++|+++|+|++||..+-+...-. .-+.++..+++|..+-.+.++....++||.|++++....+
T Consensus 750 p~~w~~~~~al~ga~~a~~~lgipvigGKdSmsn~~~~v~iPPTlvi~avgv~Dv~~~vt~~~K~~G~~i~lig~~~~~- 828 (1239)
T TIGR01857 750 AERWGKPFAALLGAIKAQIDLGLPAIGGKDSMSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQALE- 828 (1239)
T ss_pred hhHHhHHHHHHHHHHHHHHHhCCCCCcceecCccccCCeeeCCccEEEEEeccCHhhccChhhccCCCEEEEEcCCccc-
Confidence 2 3556779999999999999999999986642100 0112456778897754677777656789999999854221
Q ss_pred hHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhc-CCCceEEE
Q 016548 237 NGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVF-PKGLGAVI 315 (387)
Q Consensus 237 ~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~-~s~~g~~I 315 (387)
.+ .|. ...+ +...+.+.++++++.|.++||+|+|||+.+|.+|+ ..++|++|
T Consensus 829 ------------~g------~~d-~~~~--------k~~~~~v~~li~~g~v~s~hDvS~GGL~vaLaEMaf~g~~G~~i 881 (1239)
T TIGR01857 829 ------------DG------TID-FDLL--------KENFAQIEELIADHKVVSASAVKYGGVAESLAKMTFGNRIGAEL 881 (1239)
T ss_pred ------------CC------CCC-HHHH--------HHHHHHHHHHHHCCCEEEEEeCCcChHHHHHHHHHhcCCceEEE
Confidence 01 121 0111 12345677888899999999999999999999998 48899999
Q ss_pred EcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCCCCeEEEEEEEcC
Q 016548 316 YEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGGYEAYHIGEVVNG 381 (387)
Q Consensus 316 d~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~~~~~vIG~V~~g 381 (387)
+++.. ..+|++..| +|+.++++. + ..++.+||+++.+
T Consensus 882 ~l~~~--------------------~~LFsE~~gr~vvev~~~~-----~----~~~~~~IG~v~~~ 919 (1239)
T TIGR01857 882 NNPEL--------------------EDLFTAQYGSFIFESPEEL-----S----IANVEKIGQTTAD 919 (1239)
T ss_pred ecCcH--------------------HHhhCCCCceEEEEEChhh-----c----CCcceEEEEECCc
Confidence 86430 136999988 888888762 1 2568899999764
No 48
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.65 E-value=2.9e-16 Score=174.94 Aligned_cols=234 Identities=17% Similarity=0.093 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHHHHhhhCChHHHHHHhhcC---CCC-------------CHHHHHHHHHHHHHHHHHcCCeEEeecce
Q 016548 125 HDTIGIDLVAMSVNDIVTSGAKPLFFLDYFAT---SHL-------------EVDLAEKVIKGIVDGCQQSDCVLLGGETA 188 (387)
Q Consensus 125 ~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~---~~~-------------~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~ 188 (387)
|+..+.-.+-..++|++++|+. .++.|.+ +++ ....+.+++.|++..-.++|+|-++|++-
T Consensus 329 Pf~GAATGvGG~IRD~lsg~a~---~~~~Lr~~g~g~p~~~~~~~~~gklp~r~I~~gv~~G~s~YGN~~GvpTg~g~~~ 405 (1239)
T TIGR01857 329 PFGGAATCIGGAIRDPLSGRSY---VYQAMRVTGAGDPTVPISETLKGKLPQRKITTTAAHGYSSYGNQIGLATGQVSEI 405 (1239)
T ss_pred CCCcccccCCchhcccccccee---eecccccCCCCCCCccccccccCCCchhhhhhhcccceeccCcccCCceeeEEEE
Confidence 5578888999999999999886 3344322 222 33567778888888889999999999999
Q ss_pred eeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCC----CchhhhHHHHHHHHHhhcCCcccCCCCCchhHH
Q 016548 189 EMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTL 264 (387)
Q Consensus 189 ~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs----~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~ 264 (387)
..+++.. +.+ +.+.++|.++++++. +...++||.|+++|. .|+|+..+|-. .+... +.....+ ..+.
T Consensus 406 f~~~Y~~-~~l-v~~~~vG~~~~~~v~-k~~~~~Gd~iv~~Gg~tGRdGigGat~SS~--~~~~~--s~~~~~~--aVQ~ 476 (1239)
T TIGR01857 406 YHPGYVA-KRM-EVGAVVAATPKENVV-REKPEPGDVIILLGGKTGRDGIGGATGSSK--EHTVE--SLELCGA--EVQK 476 (1239)
T ss_pred EecCCCC-Cce-EEEEEEEeecHHHhc-cCCCCCCCEEEEECCCCCcCcccchhhhhh--hcccc--ccccccC--ccCc
Confidence 9987544 344 567789999977655 455999999999775 67776655432 22221 1111122 2233
Q ss_pred HHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhc
Q 016548 265 GEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTF 344 (387)
Q Consensus 265 ~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~f 344 (387)
+++... +...+.++++.+++.|+++||++.|||..+|.||+. |++||++++|... -+++|+|+ +|
T Consensus 477 Gdp~~E--kkl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~---G~~IdL~~vp~~~--------~gl~p~Ei--Lf 541 (1239)
T TIGR01857 477 GNAPEE--RKIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD---GLEIDLNKVPKKY--------EGLNGTEL--AI 541 (1239)
T ss_pred CCHHHH--HHHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhC---CEEEEcCCCcccc--------CCCCHHHH--hh
Confidence 333222 223455666777889999999999999999999974 9999999988643 26778776 68
Q ss_pred CCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 345 NMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 345 n~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
+|..+ |+++|+|++.+++.+.+++. .++.+||+|++.+.+.
T Consensus 542 SESQeRmlv~V~pe~~e~f~~i~~~~~l~~~vIG~vt~~~~l~ 584 (1239)
T TIGR01857 542 SESQERMAVVVSPEDVDAFLAYCNEENLEATVVATVTEKPRLV 584 (1239)
T ss_pred CCcCCeEEEEEChhhHHHHHHHHHHCCCCEEEEEEECCCCeEE
Confidence 99877 99999999999999999877 8999999998755443
No 49
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.61 E-value=1.6e-14 Score=151.78 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=137.7
Q ss_pred CCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCC--HHHHHH
Q 016548 90 GIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE--VDLAEK 166 (387)
Q Consensus 90 ~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~--~e~~~~ 166 (387)
.+|.|++|+++.+ ..+++++|+.+... .-+|+..+..+|++++++++|+||+|++++|++++++++ +.++.+
T Consensus 382 ~P~~~a~v~~~~~~~~~a~~~~~np~~~-----~~~p~~g~~~av~ea~rn~~~~Ga~p~~i~~~~nf~~p~~~~~~~~~ 456 (601)
T PRK14090 382 PPGFGAAVMRIKRDGGYSLVTHSRADLA-----LQDTYWGTFIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGLSA 456 (601)
T ss_pred cCCCCcEEEEEcCCCeEEEEcCCCCcee-----ccCHHHHHHHHHHHHHhhHhhhCCcHHHceechhcCCCCCCHHHHHH
Confidence 5677899999863 37999999976432 235779999999999999999999999999999888764 558999
Q ss_pred HHHHHHHHHHHcCCeEEeecceeeCCccc-CCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHH
Q 016548 167 VIKGIVDGCQQSDCVLLGGETAEMPDFYA-AGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 245 (387)
Q Consensus 167 i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~-~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i 245 (387)
.++||.++|+.+++|+|||+.+.+..... +-..++..+++|.++.++.++. +.|| |+++|.... .+
T Consensus 457 ~~~~~~~a~~~~~~p~i~G~~S~~n~~~~~~i~PT~~~~~vg~~~~~~~~~~---~~~~-i~lig~~~~-----~~---- 523 (601)
T PRK14090 457 MMTALKDACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKP---KPSK-VFAVGWNDF-----EL---- 523 (601)
T ss_pred HHHHHHHHHHHhCCCeecceeccccCCCCccCCCCceEEEEEEeccccccCC---CCCe-EEEECCCCC-----CH----
Confidence 99999999999999999999997653211 0112567789999987666654 5788 888886211 00
Q ss_pred HhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC-CccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcH
Q 016548 246 LAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG-GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPA 324 (387)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~-~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~ 324 (387)
.+. +...+.++++++++ .++++||+|+|=...++ .+.|+.|+.+.+...|
T Consensus 524 -------------------~~~-----~~~~~~~~~~i~~~~~~~~~hd~s~g~~~~~~-----~~~~~~~~~~~~~~~~ 574 (601)
T PRK14090 524 -------------------ERE-----KELWREIRKLSEEGAFILSSSQLLTRTHVETF-----REYGLKIKLKLLEVRP 574 (601)
T ss_pred -------------------HHH-----HHHHHHHHHHHhCCCeEEEEEEcccCchhhhh-----ccccccccchhhccCc
Confidence 010 11334566778888 78999999998222222 4678878776654443
No 50
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=98.80 E-value=2.9e-07 Score=98.06 Aligned_cols=230 Identities=19% Similarity=0.135 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHHHHHHHhhhCChHHHHH----HhhcCCCCC--HHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCC
Q 016548 124 IHDTIGIDLVAMSVNDIVTSGAKPLFFL----DYFATSHLE--VDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAG 197 (387)
Q Consensus 124 ~~~~iG~~aVa~nvnDIaa~GA~Pl~~l----d~l~~~~~~--~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~ 197 (387)
++...++.+|+.++.+|.+.=.+-+.=+ +.+...+.+ -..+.+-++.+..+..++||+|=||.-+-+-.+.-.+
T Consensus 725 da~a~ARm~VaE~l~NLv~a~i~sL~dvK~SgNWM~aak~~GEGarlydAv~aL~~~L~eLgiAIdgGKDSlSMa~k~~g 804 (1320)
T KOG1907|consen 725 DAAASARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQALCLGLCELGIAIDGGKDSLSMAMKWDG 804 (1320)
T ss_pred CHHHHhHHHHHHHHHHhHhhcccchhheeeccceeecccCCCcchHHHHHHHHHHHHHHHhceeecCCccchhhheeeCC
Confidence 3567899999999999998766644322 123233333 2467777788877777999999998876442222111
Q ss_pred c-----eeEEEEEEEEEcC-CCccCC--CCCCCCCE---EEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCc-h-hHH
Q 016548 198 E-----YDLSGFAVGIVKK-DSVVDG--KNIVPGDV---LIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSE-N-TTL 264 (387)
Q Consensus 198 ~-----~~lsgtavG~v~~-~~~l~~--~~a~~GD~---Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~-~-~~~ 264 (387)
+ ..+..++.--++. .+.+++ ++..+|+. |++--..+....|-|.+..+...-|. ..|.. . ..+
T Consensus 805 e~VkaPgtLvIsayapc~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~QiG~----d~Pdl~~~~~l 880 (1320)
T KOG1907|consen 805 EVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQIGD----DCPDLDNFDEL 880 (1320)
T ss_pred eEEecCceEEEEeeccCCCcceeecccccCCCCCCceEEEEEEccccccccchHHHHHHHHHhCC----CCCCccchHHH
Confidence 1 1344444444443 244444 22345555 33333344344444555555554443 23321 1 122
Q ss_pred HHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhc-CCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHh
Q 016548 265 GEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVF-PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRT 343 (387)
Q Consensus 265 ~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~-~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~ 343 (387)
.. +...+..+++.+.|.|-||+|||||+-.+.||+ .+++|++||++.. .. ++.+.+. +
T Consensus 881 k~--------~f~~vqqL~~~~ii~AgHD~SDGGLlvt~lEMAfag~~gi~idl~~~-~~----------~~~~~~~--L 939 (1320)
T KOG1907|consen 881 KK--------FFSVVQQLLNEGIILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSP-NQ----------NIKLFDI--L 939 (1320)
T ss_pred HH--------HHHHHHHHHhcCceeecccccCCchhHHHHHHHhhcccceEEecCCc-cc----------cccHHHH--H
Confidence 22 233456677788999999999999999999998 4899999998752 11 2233332 5
Q ss_pred cCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEE
Q 016548 344 FNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEV 378 (387)
Q Consensus 344 fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V 378 (387)
|++..|.|+-|+..+.+++++.+++. +++..||++
T Consensus 940 F~EElG~v~evs~~dl~~v~~~~~~~gv~~~~ig~~ 975 (1320)
T KOG1907|consen 940 FAEELGAVLEVSDTDLEKVLEIFSEAGVKCEYIGKA 975 (1320)
T ss_pred HHHhhCeEEEeccccHHHHHHHHHhcCCcceeeeee
Confidence 88888999999999999999999988 999999987
No 51
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.37 E-value=3.4e-06 Score=96.09 Aligned_cols=216 Identities=14% Similarity=0.137 Sum_probs=135.7
Q ss_pred hCChHHHHHH--hhcCCCC----CH---HHH-HHHHHHHHHHHHHcCCeEEeecceeeCC-----cccCCceeEEEEEEE
Q 016548 143 SGAKPLFFLD--YFATSHL----EV---DLA-EKVIKGIVDGCQQSDCVLLGGETAEMPD-----FYAAGEYDLSGFAVG 207 (387)
Q Consensus 143 ~GA~Pl~~ld--~l~~~~~----~~---e~~-~~i~~Gi~~ac~~~g~~lvGGeT~~~p~-----~~~~~~~~lsgtavG 207 (387)
.|..|.+... |...+.. +. +.+ ...++--.+..+++|+|.++|-+-..+. .+...++.++| .+|
T Consensus 191 p~~~~~a~~~G~y~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~P~i~Gf~r~~~~~~~~~~~~~kpim~~G-~lg 269 (1202)
T TIGR01739 191 PGVMPVASQLGLYYQTPALTGEQDLPLSRKMSTAMLQAQASALRASGVPTCGGFIRLISKNKLSLPTPYTPTYNTS-ILD 269 (1202)
T ss_pred ccCchhhhccceEEecCCCCCcccchhHHHHHHHHHHHHHHHHHhcCCCccceEEEEecccccccccCCCCeEEcc-ccC
Confidence 5778887663 3332221 11 222 2556666778899999999999877642 11112233433 578
Q ss_pred EEcCCCccCCCCCCCCCEEEEeCC----CchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHH
Q 016548 208 IVKKDSVVDGKNIVPGDVLIGLPS----SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDII 283 (387)
Q Consensus 208 ~v~~~~~l~~~~a~~GD~Ii~~gs----~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~ 283 (387)
.+++.. +.....++||.|+++|. .|.|+..++. .+ -|.....+.+.+ +.+.+..
T Consensus 270 ~i~~~~-~~k~~~~~G~~iV~lGg~~~~~G~~G~~~s~------------~~-s~~~~~~iq~~i--------~~~~~~~ 327 (1202)
T TIGR01739 270 RLCHVT-INTADEPPGQDIVALGQFEPSLLPDTPPLLY------------AD-SPLDVNKILTAL--------ALLTDDV 327 (1202)
T ss_pred CCChhh-cccccCCCCCEEEEECCCCCCCCCCCCcccc------------CC-CHHHHHHHHHHH--------HHHHHhc
Confidence 776543 55677999999999986 5566544321 00 111112222221 2222222
Q ss_pred HhC-CccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCH------HHHHH--hcCCCee-EEEE
Q 016548 284 STG-GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIED------SEMRR--TFNMGIG-MVLV 353 (387)
Q Consensus 284 ~~~-~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~------~e~~~--~fn~G~g-ll~~ 353 (387)
+.. ...++||...||+..+|.||+. .+|++||++++|.+. ...+. ..++ +||.+ .||+-.. ++++
T Consensus 328 ~~~~i~~sI~D~Gagg~sn~l~El~~-~~G~~i~L~~lP~~~-~s~L~---~~~~~~~e~~e~~v~~~~~N~~~~~~~La 402 (1202)
T TIGR01739 328 KTPCIVGSIRPLGPCSVKEHLTALLP-PCGAELDLSNLPDEV-VAALA---RSSPANRVENEKMVKQYFLNVVCSVVFLT 402 (1202)
T ss_pred cCCeeEEEecCCCCchHHHHHHHHhc-cCceEEEhHhCCchh-hcccc---CCChhhhHHHHHHhhhhcccccceeEEEE
Confidence 222 2389999999999999999996 789999999999442 11111 1222 23321 3677765 8888
Q ss_pred Eec----------cCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 354 VSK----------ETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 354 v~~----------e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
|++ +..+++.++++.. .++++||++++..++.+
T Consensus 403 V~~~~~~~~~~~~~~l~~~~~ic~re~cp~~vlG~~t~~~~l~v 446 (1202)
T TIGR01739 403 VKNTPHNTGTEGVTPLERLKTACRMFGCPVKVLGKLVPLPGLHI 446 (1202)
T ss_pred ECCcccccccccchHHHHHHHHHHHCCCCEEEEEEEeCCCcEEE
Confidence 888 6778888888777 99999999999888764
No 52
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00025 Score=76.41 Aligned_cols=202 Identities=18% Similarity=0.235 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEeecceee-----------CCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCC-
Q 016548 164 AEKVIKGIVDGCQQSDCVLLGGETAEM-----------PDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS- 231 (387)
Q Consensus 164 ~~~i~~Gi~~ac~~~g~~lvGGeT~~~-----------p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs- 231 (387)
+-+--.|-.+.-.+||=|.+.|-+-.. .++.+| +.++| .+|.+++.... ...+.||..|+.+|.
T Consensus 384 mIEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~gerrey~KP--IMfsg-GiG~i~~~~~~-K~~~apg~~likiGGp 459 (1320)
T KOG1907|consen 384 MIEASNGASDYGNKFGEPVISGYARTFGMRVLLENGERREYHKP--IMFSG-GIGTIRKQHAR-KEPIAPGQLLIKIGGP 459 (1320)
T ss_pred HhhCcCChhhhcccccchhhhhhhhhhcccccccCccccccccc--eEeec-ccCccCHHHhh-cCCCCCCCEEEEecCc
Confidence 334445666666677777776654321 122222 33444 68998875444 455999999999985
Q ss_pred ---CchhhhH-HHHHHHHHhhcCCcccCCCCCchhHHHHHhccc-chhhHHHHHHHHHhCCccEEecCCCchHhchHhhh
Q 016548 232 ---SGVHSNG-FSLVRRVLAQSGLSLKDQLPSENTTLGEALMAP-TVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRV 306 (387)
Q Consensus 232 ---~G~~~~G-~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P-~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~ 306 (387)
+|..+.+ .|.+ ...+ +.++.+...+-+++-+.- ....++.+.++-.+.-+.++||...||..-.|.|+
T Consensus 460 ~yrIG~GGGAASSv~----~G~g---~aeLDFaaVQRGdaEM~~kl~rVvrAC~~lge~NpI~sIHDqGAGGn~NvlkEL 532 (1320)
T KOG1907|consen 460 VYRIGVGGGAASSVV----QGEG---SAELDFAAVQRGDAEMERKLQRVVRACAELGENNPIQSIHDQGAGGNGNVLKEL 532 (1320)
T ss_pred eEEEecccchhhhhh----cCCC---ccccchHHhhcCCHHHHHHHHHHHHHHHHhcCCCceeEeeccCCCccccccHhh
Confidence 4444322 2332 2222 112332222222221110 01235666665555568999999999999999999
Q ss_pred cC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCc
Q 016548 307 FP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEG 383 (387)
Q Consensus 307 ~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~g 383 (387)
.. .++|++++...++.-+. .++|.|++-. +-.+ .++.|++++.+.+.++++.. .+..+||+++.+..
T Consensus 533 V~~~~~Ga~~~~r~~~~gdp--------smS~~EiW~a--EyQE~~allv~a~~l~~le~IckRERcp~svVG~vt~eqR 602 (1320)
T KOG1907|consen 533 VEDNDLGATFDSRTFQLGDP--------SMSPMEIWCA--EYQENYALLVKAEDLDILESICKRERCPVSVVGEVTGEQR 602 (1320)
T ss_pred ccccCCccEEEeeeeecCCC--------CCCHHHHhhh--hhhhcceeeeCHHHHHHHHHHHHhccCCeeEEEEEccCce
Confidence 85 78999999998876432 4677665321 2222 78888888888888888877 99999999998877
Q ss_pred eEE
Q 016548 384 VSY 386 (387)
Q Consensus 384 v~~ 386 (387)
+.+
T Consensus 603 ~~l 605 (1320)
T KOG1907|consen 603 VIL 605 (1320)
T ss_pred EEE
Confidence 764
No 53
>PHA03366 FGAM-synthase; Provisional
Probab=96.78 E-value=0.025 Score=65.59 Aligned_cols=222 Identities=13% Similarity=0.135 Sum_probs=124.2
Q ss_pred hCChHHHHHH--hh-cCCC---CCHH---HHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCce----eEEE-EEEEE
Q 016548 143 SGAKPLFFLD--YF-ATSH---LEVD---LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEY----DLSG-FAVGI 208 (387)
Q Consensus 143 ~GA~Pl~~ld--~l-~~~~---~~~e---~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~----~lsg-tavG~ 208 (387)
.|..|.+... |. .+.. ++.. .+...++--.+..+++|.|+++|=+-..+.-.....+ .++- ..+|.
T Consensus 282 p~~~~~a~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~lnk~G~Pvi~Gf~r~~~~~~~~~~~~~~~m~~~~~~~g~ 361 (1304)
T PHA03366 282 PGGLPRASALGWYVTTPSGGGPLSPLAPRQIAETLEAQARSLNCSGVPVVGGFLRTIPTTLALISPLPNNMLTFTSLLST 361 (1304)
T ss_pred cccchhhhccceEEecCccCCCcchhhHHHHHHHHHHHHHHHhhcCCCEeccEeEEeccccccccccCCceeeecccccc
Confidence 5677776553 22 2221 1223 4445566666677899999999988765311111112 2221 14566
Q ss_pred EcCCCccCCCCCCCCCEEEEeCCCchh--hhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC
Q 016548 209 VKKDSVVDGKNIVPGDVLIGLPSSGVH--SNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG 286 (387)
Q Consensus 209 v~~~~~l~~~~a~~GD~Ii~~gs~G~~--~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~ 286 (387)
+++. .+.....++||.|+.+|..-.. ...-+.+. ... ...+. ++.+ -.+.+.+.+...
T Consensus 362 ~~~~-~~~~~~~~~g~~vv~lG~y~~~~g~~a~~~~~---~~S-----------~~~~n-avqr----~~~~m~~~~~~~ 421 (1304)
T PHA03366 362 ISTI-ALDTARYRPGQYIVALGSFEPSSGPDTPPYLY---RDS-----------GLEAN-KILQ----ALKLFYSLLPGP 421 (1304)
T ss_pred cchh-hhccCCCCCCCEEEEEcCceecCCCCCCCccc---ccC-----------HHHHH-HHHH----HHHHHHhhcCCc
Confidence 6543 3455667899999999964322 11111110 000 00111 1110 011111112222
Q ss_pred Cc-cEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHH---HH--hcCCCee-EEEEEecc--
Q 016548 287 GV-KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEM---RR--TFNMGIG-MVLVVSKE-- 357 (387)
Q Consensus 287 ~v-~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~---~~--~fn~G~g-ll~~v~~e-- 357 (387)
.| .++||-..||....|.+++. ..|++||.+++| .+....+...++-..+.+ ++ .||.-.- +.++++++
T Consensus 422 ~v~~si~d~g~~~~~~~L~elv~-p~G~~i~~~~lp-d~tls~le~~~~e~qe~~~~~v~~~flnv~~~~~~l~i~~~~~ 499 (1304)
T PHA03366 422 CISGSSRPLGPASVLEHLLALCP-PGGLLLFLSALP-EDVVSGLKPFSASNRETNEEIVKQYFLNVYCSVVFLVIKNTHE 499 (1304)
T ss_pred eEEEecCCCCcchHHHHHHHHhc-cCceEEEhhhCC-hHHhhhhhcccccchhHHHHHhhhhhcccccceEEEEEcCccc
Confidence 22 47788888999999999986 579999999999 555554432233333322 22 2444433 45567776
Q ss_pred ------CHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 358 ------TSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 358 ------~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
..+.+.++++.. .+++++|+++...++.+
T Consensus 500 ~~~~~~~l~~l~~ic~rercp~~vvG~~t~~~~~~~ 535 (1304)
T PHA03366 500 GGEGVTPLDALKRACRLAGCPVHILGRTVPLPGIHF 535 (1304)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEEEEEecCCcEEE
Confidence 667777777766 99999999999888765
No 54
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=95.88 E-value=0.65 Score=45.20 Aligned_cols=221 Identities=13% Similarity=0.175 Sum_probs=110.0
Q ss_pred hCChHHHHHH--hh-cCC---CCCHHHHHHHH---HHHHHHHHHcCCeEEeecceeeCC-cccCCcee--EEEEEEEEEc
Q 016548 143 SGAKPLFFLD--YF-ATS---HLEVDLAEKVI---KGIVDGCQQSDCVLLGGETAEMPD-FYAAGEYD--LSGFAVGIVK 210 (387)
Q Consensus 143 ~GA~Pl~~ld--~l-~~~---~~~~e~~~~i~---~Gi~~ac~~~g~~lvGGeT~~~p~-~~~~~~~~--lsgtavG~v~ 210 (387)
.|..|++... |. .|+ +++.+..+++. +.=.+..+..|+|++||=.-.++. ...+-... +.....+.+.
T Consensus 30 P~~~~~aa~~G~Y~~~~~~~~~~~~~~~~~~~~~l~aq~~~l~~~GvPv~~GF~R~i~~~~~~~~~~~~~~~~s~l~~~~ 109 (282)
T PF12818_consen 30 PGVSPIAAALGLYVTSPSQVGDLSHKVHRQITTALQAQARSLNASGVPVVGGFIRPIDSHLSGPVPLNVLTFTSILGSIS 109 (282)
T ss_pred CCCcHhhhhceeeEecCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCccCcEeEEecCcccccccCceEEEEEEEcccc
Confidence 6888988774 43 233 23334444444 444455567899999998887741 11111111 2222344443
Q ss_pred CCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhc-CCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCc-
Q 016548 211 KDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQS-GLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGV- 288 (387)
Q Consensus 211 ~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~-~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v- 288 (387)
+ ..+.....++||.|+.+|+.=.... ... ...+.+ -+.+...+-.+ ++...+......|
T Consensus 110 ~-~~l~~~~~~~g~~iv~LG~F~p~~~---------~d~~p~~y~d-S~~~~~~i~~a--------L~~f~~~~~~~cis 170 (282)
T PF12818_consen 110 Q-TNLNTARPRPGQYIVCLGDFEPTPG---------PDTPPYTYRD-SGLEQNKILQA--------LQQFYSTLESPCIS 170 (282)
T ss_pred h-hhhhccCCCCCCEEEEecCCcccCC---------CCCCCccccc-CHHHHHHHHHH--------HHHHHHhcCCCcEE
Confidence 3 4556677889999999987432110 000 000000 00000011111 1111111222223
Q ss_pred cEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCC---HHHHHH--hcCCCee-EEEEEeccC----
Q 016548 289 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIE---DSEMRR--TFNMGIG-MVLVVSKET---- 358 (387)
Q Consensus 289 ~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~---~~e~~~--~fn~G~g-ll~~v~~e~---- 358 (387)
+.+...-.-=+.+.|.+++. ..|++|+.+.+|. ++...+.+....+ -+++++ .||--.- +.++|+.+.
T Consensus 171 ~~~r~~~~~sv~~~L~aL~~-~~G~~l~lS~LP~-~i~~~L~~~~~~~~~~~~~~i~~~FLNv~~~~vfl~V~n~~~~~~ 248 (282)
T PF12818_consen 171 GSIRPPGPASVKEHLLALCH-PGGARLDLSALPQ-EIVSQLKRSPPENREHNEEIIKQHFLNVYCSVVFLVVSNTPIDTN 248 (282)
T ss_pred eecCCCCchhHHHHHHHhcC-CCceEEEhhcCCH-HHHHHhccCCchhHHHHHHHHHhhhhccccceEEEEEecCCCCCc
Confidence 22333322225556666664 6999999999873 4455554433333 133333 2444333 444554433
Q ss_pred --H-----HHHHHhhcCC-CCeEEEEEEEcCCce
Q 016548 359 --S-----HTILEGGRGG-YEAYHIGEVVNGEGV 384 (387)
Q Consensus 359 --~-----~~v~~~l~~~-~~~~vIG~V~~g~gv 384 (387)
. +.+...+... .++.+||+.+...|+
T Consensus 249 ~~~~~~~l~~L~~~c~~~gc~~~iLG~t~~~~Gi 282 (282)
T PF12818_consen 249 TDQGFGPLDALKRACRLCGCPVHILGRTCPEPGI 282 (282)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEEeeeccCCCC
Confidence 1 3344444445 899999999988875
No 55
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=77.02 E-value=0.8 Score=34.90 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=37.5
Q ss_pred hhhccchhhHHhhhhcCCCccc---ccccCc-cchhhhhcccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNNV---LLNCKL-PFLSMASRRVSVNSCVL 52 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~ 52 (387)
++.-.+|||.+||..+.++.|. +++.+| |+|+.|...+.+...++
T Consensus 9 ~R~~~~ltQ~elA~~vgVsRQTi~~iEkgky~Psl~La~kia~~f~~~i 57 (68)
T COG1476 9 LRAELGLTQEELAKLVGVSRQTIIAIEKGKYNPSLELALKIARVFGKTI 57 (68)
T ss_pred HHHHhCcCHHHHHHHcCcCHHHHHHHHcCCCCchHHHHHHHHHHhCCCH
Confidence 5667899999999999999885 888865 99999998888877543
No 56
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=63.12 E-value=5.2 Score=40.03 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhCChHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHcCCeEEe
Q 016548 130 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLE--VDLAEKVIKGIVDGCQQSDCVLLG 184 (387)
Q Consensus 130 ~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~--~e~~~~i~~Gi~~ac~~~g~~lvG 184 (387)
...+..++.++..+||.-+.++.|+.+...+ .+...+.++-+.+.|+++|+|++-
T Consensus 105 ~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 105 DLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred cccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 3556677899999999987777777765443 456667899999999999999876
No 57
>PHA01976 helix-turn-helix protein
Probab=60.85 E-value=3.1 Score=30.72 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=38.3
Q ss_pred hhhhccchhhHHhhhhcCCCccc---cccc-CccchhhhhcccccccccccCCC
Q 016548 7 SIATNTELTSRFFASKLNPTNNV---LLNC-KLPFLSMASRRVSVNSCVLSMSG 56 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 56 (387)
.++.-.+|||++||..+..+.+. |+++ ..|..+.+...+.++.++.+...
T Consensus 9 ~~R~~~glt~~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 9 KARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 34566899999999999776443 8888 66888888888888877665443
No 58
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=48.08 E-value=5.9 Score=27.84 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=32.4
Q ss_pred hccchhhHHhhhhcCCCccc---cccc-Cccchhhhhcccccccccc
Q 016548 10 TNTELTSRFFASKLNPTNNV---LLNC-KLPFLSMASRRVSVNSCVL 52 (387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~ 52 (387)
.-.++||++||.++..+.+. +++. +.|.++.+...+.+...+.
T Consensus 6 ~~~gls~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 6 KEKGLSQKELAEKLGISRSTISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHTTS-HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred HHcCCCHHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 45789999999999777554 8888 7799999888887776543
No 59
>PRK08359 transcription factor; Validated
Probab=45.39 E-value=9.5 Score=34.57 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=38.9
Q ss_pred hhhccchhhHHhhhhcCCCccc---cccc-CccchhhhhcccccccccccC
Q 016548 8 IATNTELTSRFFASKLNPTNNV---LLNC-KLPFLSMASRRVSVNSCVLSM 54 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~ 54 (387)
++...+|||++||.++..+-+. |+++ .-|.+..+...+.++.++..+
T Consensus 93 aRe~kglSQeeLA~~lgvs~stI~~iE~G~~~Ps~~~l~kLak~l~VsL~e 143 (176)
T PRK08359 93 AIQKSGLSYEELSHEVGLSVNDLRRIAHGEYEPTIKEAKKLERYFKIKLIE 143 (176)
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHCCCcCCCHHHHHHHHHHhCCcccc
Confidence 4567899999999999887664 7888 559999999999999887555
No 60
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=44.86 E-value=7.7 Score=34.35 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=40.3
Q ss_pred hhhhccchhhHHhhhhcCCCccc---cccc-CccchhhhhcccccccccccCCC
Q 016548 7 SIATNTELTSRFFASKLNPTNNV---LLNC-KLPFLSMASRRVSVNSCVLSMSG 56 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 56 (387)
.++...+|||++||.++..+.+. |+++ ..|.++.+...+.++.++.++..
T Consensus 76 ~~Re~~glSqeeLA~~lgvs~s~IsriE~G~~~Ps~~~l~kLa~~Lgvsl~el~ 129 (154)
T TIGR00270 76 REREKRGWSQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLLKIKLREQV 129 (154)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHc
Confidence 34567899999999999776543 8898 78999999999999887666543
No 61
>PRK06424 transcription factor; Provisional
Probab=44.36 E-value=10 Score=33.16 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=37.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSM 54 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 54 (387)
++...||||.+||..+..+.+ .|+++ +.|.++.+...+.++..+..+
T Consensus 92 lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~e 142 (144)
T PRK06424 92 ARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLIE 142 (144)
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 566789999999999977644 39999 679999999988888875543
No 62
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=32.71 E-value=22 Score=24.74 Aligned_cols=42 Identities=17% Similarity=-0.068 Sum_probs=28.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccC-ccchhhhhccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCK-LPFLSMASRRVSVNS 49 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 49 (387)
+..-.++||+++|..+..+.+ .|++++ -|.++.+...+..+.
T Consensus 10 ~r~~~gltq~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~i~~~lg 55 (58)
T TIGR03070 10 RRKALGLTQADLADLAGVGLRFIRDVENGKPTVRLDKVLRVLDALG 55 (58)
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 345679999999999976644 378774 566666665555544
No 63
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.58 E-value=1.1e+02 Score=23.00 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=20.5
Q ss_pred CCCeeEEEEEeccCHHHHHHhhcCC-CCe
Q 016548 345 NMGIGMVLVVSKETSHTILEGGRGG-YEA 372 (387)
Q Consensus 345 n~G~gll~~v~~e~~~~v~~~l~~~-~~~ 372 (387)
+.|.|+.+-+++++.+++.+.+++. ++.
T Consensus 38 ~~~CG~al~~~~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 38 SAGCGLALRFEPEDLEKIKEILEENGIEY 66 (73)
T ss_pred cCCCCEEEEEChhhHHHHHHHHHHCCCCe
Confidence 3455688888888888888888765 443
No 64
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=25.77 E-value=22 Score=25.74 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=29.0
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....++||+++|..+..+.+ .|++. +-|.+..+...+....++.+
T Consensus 7 ~r~~~~lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~v~~~ 56 (64)
T PF12844_consen 7 LREEKGLTQKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALGVSLD 56 (64)
T ss_dssp HHHHCT--HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHTS-HH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhCCCHH
Confidence 456789999999999966533 38888 56777777777766665443
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=25.34 E-value=70 Score=31.84 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=40.1
Q ss_pred EEEEcCCCCC----cHHHHHHHHhCCCCHHHHHHhcCC----CeeEEEEEeccCHHHHHHhhcCC-CCeEEE
Q 016548 313 AVIYEDSWKV----PAVFKWIQQAGRIEDSEMRRTFNM----GIGMVLVVSKETSHTILEGGRGG-YEAYHI 375 (387)
Q Consensus 313 ~~Id~~~ipi----~~~~~~i~~~~~i~~~e~~~~fn~----G~gll~~v~~e~~~~v~~~l~~~-~~~~vI 375 (387)
=+|+.++||. |+....+.+.|.+-+-|+ .||+ |+|||-.=.++++|+..+.|++. ++-.+|
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEI--IfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEI--IFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEE--EeccCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3566678884 334444555666666565 5765 56788777889999999998764 444443
No 66
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=24.75 E-value=26 Score=31.44 Aligned_cols=51 Identities=22% Similarity=0.085 Sum_probs=39.1
Q ss_pred hhhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCC
Q 016548 7 SIATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGS 57 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 57 (387)
.++...+|||+++|.++..+.+ .|+++ ..|.++.+...+.++.++.++-..
T Consensus 14 ~~R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~ 68 (185)
T PRK09943 14 EIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 (185)
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHcc
Confidence 3566789999999999976644 38888 678888888888888876655443
No 67
>COG3721 HugX Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=23.64 E-value=1.6e+02 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC
Q 016548 327 KWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG 369 (387)
Q Consensus 327 ~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~ 369 (387)
..+++.+++.+.|.++.+-++ ++.+||-++++++.+.+.+.
T Consensus 31 eamA~~~~v~~~eIv~aLP~~--~v~vvpgdrfd~iw~~m~eW 71 (176)
T COG3721 31 EAMAEQYNVTELEIVRALPEE--AVVVVPGDRFDTIWDEMCEW 71 (176)
T ss_pred HHHHHHhCCCHHHHHHhCchh--heeecchHHHHHHHHHhhcc
Confidence 456777888888988887664 89999999999999887654
No 68
>PRK09726 antitoxin HipB; Provisional
Probab=23.20 E-value=52 Score=25.83 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=35.9
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSM 54 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 54 (387)
+..-.++||.+||..+..+.+ .|+++ ..|.++.+...+..+..+.+.
T Consensus 20 ~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~ 70 (88)
T PRK09726 20 VRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcch
Confidence 345678999999999876644 38888 578888888888888876555
No 69
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=22.81 E-value=32 Score=29.24 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=38.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
+....++||.+||..+..+.+ -|+++ +-|..+.+...+.++.++.+....+
T Consensus 13 ~R~~~gltq~~lA~~~gvs~~~is~~E~g~~~p~~~~l~~la~~l~vs~~~l~~g 67 (135)
T PRK09706 13 RRKQLKLSQRSLAKAVKVSHVSISQWERDETEPTGKNLFALAKALQCSPTWLLFG 67 (135)
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 456679999999999977754 38888 5688887888887777766644433
No 70
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=22.65 E-value=75 Score=26.45 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=13.5
Q ss_pred EEeccCHHHHHHhhcCC---CCeEEEE
Q 016548 353 VVSKETSHTILEGGRGG---YEAYHIG 376 (387)
Q Consensus 353 ~v~~e~~~~v~~~l~~~---~~~~vIG 376 (387)
+|+++.++.+.+.+++. +..++|.
T Consensus 73 VV~~~~~~~i~~~i~ekL~~eryTii~ 99 (110)
T PF10126_consen 73 VVDEEKVEKIEKLIKEKLKNERYTIIE 99 (110)
T ss_pred EECHHHHHHHHHHHHHHhcCCceEEEE
Confidence 45666666666655542 4455554
No 71
>PF15569 Imm21: Immunity protein 21
Probab=22.01 E-value=1e+02 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCeEEeecceeeC
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMP 191 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p 191 (387)
+--+...|+.-+++|+|||+-...
T Consensus 17 al~ii~~~~~~~i~ILGGDVY~~~ 40 (91)
T PF15569_consen 17 ALKIINICEEKNIPILGGDVYKLK 40 (91)
T ss_pred HHHHHHHHHhcCceEEcceEEEee
Confidence 344667899999999999999765
No 72
>TIGR02612 mob_myst_A mobile mystery protein A. Members of this protein family are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein B, a member of the Fic protein family (pfam02661). This protein is encoded by the upstream member of the gene pair and belongs to a family of helix-turn-helix DNA binding proteins (pfam01381).
Probab=21.67 E-value=37 Score=29.95 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred hhhhccchhhHHhhhhcCCCccc---ccccCc---cchhhhhcccccccccccCC
Q 016548 7 SIATNTELTSRFFASKLNPTNNV---LLNCKL---PFLSMASRRVSVNSCVLSMS 55 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~ 55 (387)
.+....||||++||.++..+.+. |++... |.++.+...+.++.++.+..
T Consensus 32 ~~R~~lGmTq~eLAerlGVS~~tIs~iE~G~~~~~psl~~L~kIA~aLgv~~~~l 86 (150)
T TIGR02612 32 AIRKALGMSGAQLAGRLGVTPQRVEALEKSELSGTVTLKTLRAAAEALDCTFVYA 86 (150)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34567899999999999877554 888843 68888888888888764443
No 73
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=20.46 E-value=35 Score=28.74 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=44.9
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCCCCCCCCchhhhcC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSGSSTSEGLTYKDAG 71 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g 71 (387)
+....|+||.+||..+..+.. .|+++ ..|.++.+...+.++..+.+......+..+..-+.=+|
T Consensus 13 ll~~~Glsq~eLA~~~Gis~~~is~iE~g~~~ps~~~l~kIa~aL~v~~~~L~~~~~~~~~~l~~la~ 80 (120)
T PRK13890 13 LLDERHMTKKELSERSGVSISFLSDLTTGKANPSLKVMEAIADALETPLPLLLESTDLDKEALDALAG 80 (120)
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhccCccCHHHHHHHcC
Confidence 345679999999999876643 37777 57999999999999988777666555443333333333
No 74
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.35 E-value=59 Score=31.44 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEe
Q 016548 130 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLG 184 (387)
Q Consensus 130 ~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvG 184 (387)
.+.+..++-|.+.+||.-+.+.. .+++..+...-+-+.-+.+.|++||+|++.
T Consensus 93 ~~~l~~sVeeAvrlGAdAV~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 93 NEAVAVDMEDAVRLNACAVAAQV--FIGSEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 35566778899999999544444 444444444444467788999999999986
Done!