Query 016548
Match_columns 387
No_of_seqs 254 out of 1894
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m84_A Phosphoribosylformylgly 100.0 5.7E-72 1.9E-76 554.7 25.2 325 62-386 4-349 (350)
2 3p4e_A Phosphoribosylformylgly 100.0 7.9E-71 2.7E-75 546.2 22.2 319 62-382 8-340 (349)
3 3kiz_A Phosphoribosylformylgly 100.0 2.4E-68 8.2E-73 528.6 21.7 313 63-381 4-375 (394)
4 2btu_A Phosphoribosyl-aminoimi 100.0 2.4E-67 8.4E-72 520.7 19.6 322 65-386 3-340 (346)
5 2z01_A Phosphoribosylformylgly 100.0 1.1E-66 3.9E-71 516.3 22.6 322 65-386 5-342 (348)
6 3mdo_A Putative phosphoribosyl 100.0 1.1E-66 3.7E-71 516.0 20.2 316 64-386 4-380 (389)
7 2v9y_A Phosphoribosylformylgly 100.0 3.4E-58 1.2E-62 453.3 22.7 297 90-386 9-318 (334)
8 3mcq_A Thiamine-monophosphate 100.0 6.7E-50 2.3E-54 391.7 16.3 273 89-386 22-300 (319)
9 3c9u_A Thiamine monophosphate 100.0 4.2E-49 1.4E-53 389.5 20.3 297 61-385 24-328 (342)
10 3vti_C Hydrogenase maturation 100.0 9E-48 3.1E-52 375.8 19.5 267 90-386 18-292 (314)
11 2yxz_A Thiamin-monophosphate k 100.0 1.7E-47 5.7E-52 373.1 21.3 281 77-386 8-298 (311)
12 2rb9_A HYPE protein; hydrogena 100.0 1.6E-47 5.6E-52 377.0 21.1 286 75-386 15-312 (334)
13 2yyd_A Selenide, water dikinas 100.0 3.9E-47 1.3E-51 375.9 20.3 269 90-386 49-344 (345)
14 2z1u_A Hydrogenase expression/ 100.0 8.1E-47 2.8E-51 373.3 18.3 279 75-380 17-307 (343)
15 3u0o_A Selenide, water dikinas 100.0 3.2E-46 1.1E-50 369.6 17.8 265 90-381 47-337 (347)
16 2zod_A Selenide, water dikinas 100.0 1.5E-45 5E-50 364.5 21.2 270 90-386 49-344 (345)
17 2z1e_A Hydrogenase expression/ 100.0 2E-45 6.9E-50 362.3 21.9 269 89-386 38-316 (338)
18 3fd5_A Selenide, water dikinas 100.0 6.8E-45 2.3E-49 365.7 20.4 276 90-383 67-364 (394)
19 1vk3_A Phosphoribosylformylgly 100.0 2.1E-38 7.1E-43 334.8 17.5 285 62-385 42-333 (615)
20 3ac6_A Phosphoribosylformylgly 100.0 8.9E-38 3E-42 336.0 14.4 269 90-385 64-344 (725)
21 3ac6_A Phosphoribosylformylgly 100.0 2.3E-35 7.8E-40 317.3 19.5 261 90-385 425-696 (725)
22 3ugj_A Phosphoribosylformylgly 99.9 2.9E-25 9.9E-30 248.4 22.8 265 91-386 684-974 (1303)
23 1vk3_A Phosphoribosylformylgly 99.9 7.5E-24 2.6E-28 223.7 9.1 213 90-379 396-614 (615)
24 3ugj_A Phosphoribosylformylgly 99.9 4.9E-22 1.7E-26 222.4 17.9 242 124-386 311-596 (1303)
25 1adr_A P22 C2 repressor; trans 70.1 0.67 2.3E-05 33.4 -0.7 60 8-67 13-76 (76)
26 3t76_A VANU, transcriptional r 67.3 1.4 4.7E-05 33.9 0.5 47 8-54 32-81 (88)
27 3omt_A Uncharacterized protein 53.6 4.4 0.00015 29.0 1.1 49 8-56 16-68 (73)
28 3kz3_A Repressor protein CI; f 49.1 4.8 0.00016 29.5 0.7 45 9-53 21-69 (80)
29 2ewt_A BLDD, putative DNA-bind 48.0 4.8 0.00016 28.4 0.5 46 8-53 16-67 (71)
30 3s8q_A R-M controller protein; 46.6 4.5 0.00015 29.6 0.2 45 8-52 19-67 (82)
31 3qq6_A HTH-type transcriptiona 45.9 4.4 0.00015 29.7 0.1 47 8-54 18-69 (78)
32 3g5g_A Regulatory protein; tra 45.1 4.3 0.00015 31.5 -0.1 45 8-52 36-84 (99)
33 3lfp_A CSP231I C protein; tran 43.9 5.6 0.00019 30.3 0.4 51 8-58 9-67 (98)
34 3mlf_A Transcriptional regulat 43.5 5.4 0.00019 31.6 0.2 51 8-58 31-85 (111)
35 2l49_A C protein; P2 bacteriop 43.3 13 0.00043 28.1 2.4 51 8-58 12-68 (99)
36 2kpj_A SOS-response transcript 42.4 5.2 0.00018 30.3 -0.0 51 8-58 17-71 (94)
37 1x57_A Endothelial differentia 42.3 7.9 0.00027 28.9 1.0 51 8-58 21-75 (91)
38 2k9q_A Uncharacterized protein 41.7 5.4 0.00018 28.9 -0.0 46 8-53 10-59 (77)
39 2jvl_A TRMBF1; coactivator, he 41.5 11 0.00036 29.6 1.7 46 11-56 47-96 (107)
40 4ghj_A Probable transcriptiona 41.0 7.3 0.00025 30.6 0.6 42 8-50 44-88 (101)
41 3f6w_A XRE-family like protein 40.6 5.7 0.0002 29.0 -0.0 45 8-52 22-70 (83)
42 3vk0_A NHTF, transcriptional r 40.5 5.5 0.00019 31.4 -0.2 49 8-56 29-81 (114)
43 3eus_A DNA-binding protein; st 40.2 8.5 0.00029 28.6 0.9 43 8-50 22-68 (86)
44 1y7y_A C.AHDI; helix-turn-heli 40.1 8.1 0.00028 27.2 0.7 46 8-53 21-70 (74)
45 2a6c_A Helix-turn-helix motif; 39.5 8.1 0.00028 28.5 0.7 47 8-54 26-77 (83)
46 3fmy_A HTH-type transcriptiona 37.4 9.2 0.00031 27.6 0.7 34 8-41 19-56 (73)
47 1lmb_3 Protein (lambda repress 36.0 9 0.00031 28.5 0.4 47 9-55 26-76 (92)
48 3bs3_A Putative DNA-binding pr 35.9 9.8 0.00034 27.0 0.6 48 8-55 18-69 (76)
49 3op9_A PLI0006 protein; struct 34.1 7.5 0.00026 30.4 -0.3 52 8-59 17-72 (114)
50 2b5a_A C.BCLI; helix-turn-heli 34.0 9.5 0.00033 27.1 0.2 44 8-51 18-65 (77)
51 3ivp_A Putative transposon-rel 33.7 8.5 0.00029 30.8 -0.1 51 8-58 20-74 (126)
52 1nr3_A MTH0916, DNA-binding pr 33.4 4.2 0.00014 32.9 -2.0 42 12-53 4-55 (122)
53 3f52_A CLP gene regulator (CLG 33.3 8.5 0.00029 30.2 -0.1 46 8-53 36-85 (117)
54 2xi8_A Putative transcription 33.3 9.6 0.00033 26.0 0.2 44 8-51 9-56 (66)
55 2r1j_L Repressor protein C2; p 32.5 10 0.00034 26.1 0.2 43 8-50 13-59 (68)
56 2wiu_B HTH-type transcriptiona 32.4 8.4 0.00029 28.3 -0.3 51 8-58 20-74 (88)
57 3trb_A Virulence-associated pr 32.0 8.9 0.00031 30.1 -0.2 48 8-55 22-73 (104)
58 2ppx_A AGR_C_3184P, uncharacte 30.5 9.3 0.00032 29.2 -0.3 42 7-49 37-82 (99)
59 3b7h_A Prophage LP1 protein 11 30.5 11 0.00037 26.9 0.0 49 8-56 15-68 (78)
60 4ich_A Transcriptional regulat 28.9 12 0.0004 34.6 0.0 52 8-59 38-93 (311)
61 1y9q_A Transcriptional regulat 28.4 14 0.00049 31.6 0.5 51 8-58 19-73 (192)
62 3fok_A Uncharacterized protein 26.7 16 0.00055 34.7 0.5 49 136-184 133-181 (307)
63 2o38_A Hypothetical protein; a 25.0 18 0.0006 29.1 0.4 48 8-55 48-100 (120)
64 3fym_A Putative uncharacterize 24.5 13 0.00044 30.3 -0.6 46 8-53 11-66 (130)
65 2bnm_A Epoxidase; oxidoreducta 24.4 28 0.00095 29.8 1.6 52 8-59 18-74 (198)
66 3kxa_A NGO0477 protein, putati 24.3 14 0.00049 30.5 -0.3 46 8-53 76-125 (141)
67 3iv3_A Tagatose 1,6-diphosphat 23.6 15 0.00053 35.2 -0.3 51 133-183 112-164 (332)
68 2eby_A Putative HTH-type trans 23.4 17 0.00059 28.2 0.0 46 8-53 19-68 (113)
69 3cec_A Putative antidote prote 22.9 17 0.00059 27.7 -0.1 45 8-52 26-74 (104)
70 3l4f_D SH3 and multiple ankyri 21.7 1.5E+02 0.0051 23.7 5.5 57 176-233 39-96 (132)
71 2wus_R RODZ, putative uncharac 21.5 21 0.00073 28.3 0.2 28 8-35 15-45 (112)
72 2ef8_A C.ECOT38IS, putative tr 20.9 21 0.00073 25.6 0.1 35 8-42 18-56 (84)
73 1r69_A Repressor protein CI; g 20.8 22 0.00074 24.4 0.1 44 8-52 9-56 (69)
74 1zug_A Phage 434 CRO protein; 20.8 20 0.00069 24.8 -0.1 46 8-53 11-59 (71)
No 1
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=100.00 E-value=5.7e-72 Score=554.68 Aligned_cols=325 Identities=43% Similarity=0.795 Sum_probs=299.7
Q ss_pred CCCchhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecC-------CceEEEEeecCCCccccccccCCh
Q 016548 62 SEGLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG-------DSYLVAGTDGVGTKLELAFETGIH 125 (387)
Q Consensus 62 ~~~~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~-------~~~Lv~ttD~v~tk~~~a~~~~~~ 125 (387)
+.++||++|||||++++++|++|++++ .++|||||+|+++ ++.||++||++++|+|+++.+++|
T Consensus 4 ~~~~~y~~~gv~~~~~~~~v~~i~~~~~~~~~~~v~~giGddaav~~~~~~~~~~~~~~lv~stD~~~~k~~~a~~~~~~ 83 (350)
T 3m84_A 4 MAGLKYEDAGVNIEAGNQAVERMKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVMCGKF 83 (350)
T ss_dssp CTTCCCTTTTCCCCCSCHHHHHHHHHHHTTCCTTEECCCGGGCCEEECHHHHHHCSSEEEEEEEECCTTHHHHHHHHTCC
T ss_pred cccccHHHhCcCHHHHHHHHHHHHHHhhhcCCCCcccCCCCceEEEecCcccccCCCceEEEEcCcCCchHHHHHHhCCH
Confidence 457899999999999999999998754 2799999999986 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEE
Q 016548 126 DTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFA 205 (387)
Q Consensus 126 ~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgta 205 (387)
+++||++|++|+|||+||||+|++++++++++++++++++++++||.++|+++||+|+||||+++|++|+++.|++++|+
T Consensus 84 ~~iG~~ava~~vsDiaamGA~P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~p~~~~~~~~~l~gt~ 163 (350)
T 3m84_A 84 ENLGYDLFSAATNDIVVMGAKPITFLDYVAHDKLDPAIMEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVI 163 (350)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECTTTBCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCeEEeeeeeEcCCcccCCcccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHH-hhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHH
Q 016548 206 VGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVL-AQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDII 283 (387)
Q Consensus 206 vG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~-~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~ 283 (387)
+|.+++++++++++++|||.|+++|++|.|++|++++|+++ ++.+..+.+.++.. ...+.+++++|+++|++.+++++
T Consensus 164 vG~v~~~~~l~~~~a~~GD~Ii~tg~~G~~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~l~~~ll~p~r~~~~~~~~l~ 243 (350)
T 3m84_A 164 TGIVDRKRIINGENIKEGDIVFGLSSSGLHTNGYSFARKLFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFL 243 (350)
T ss_dssp EEEEEGGGCCCSTTCCTTCEEEEEECSSSTTSSHHHHHHHHHTTSCCCTTCCCGGGTTCCHHHHHTCCCCCCHHHHHHHH
T ss_pred EEEEeCCcccccccCCCCCEEEEecCchHHHHHHHHHHHHhhhhhcCCccccccccchhHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999876 44334444444321 24689999999999998888888
Q ss_pred H-hCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHH
Q 016548 284 S-TGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTI 362 (387)
Q Consensus 284 ~-~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v 362 (387)
+ ++.+++|+|||+|||+.+|+||++|++|++|+.++||+++.|+++++.++++|.||+++||+|.|||++|||++++++
T Consensus 244 ~~~~~v~a~~DiTggGL~~~L~ei~~sgvg~~I~~~~iP~~~~~~~~~~~~~~~~~e~~~~~~~g~gll~~v~~~~~~~~ 323 (350)
T 3m84_A 244 DNGVDIKGMAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFDKM 323 (350)
T ss_dssp HTTCCCCEEEECCTTHHHHHHHHHSCTTCEEEECGGGSCCCHHHHHHHHHHTCCHHHHHHHCCTTEEEEEEECGGGHHHH
T ss_pred hccCCeeEEEeCCCccHHHHHHHHhhhCceEEEEcccCCCcHHHHHHHHhcCCCHHHHHHHHhCCCCEEEEECHHHHHHH
Confidence 7 788999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhcCC-C-CeEEEEEEEcCCceEE
Q 016548 363 LEGGRGG-Y-EAYHIGEVVNGEGVSY 386 (387)
Q Consensus 363 ~~~l~~~-~-~~~vIG~V~~g~gv~~ 386 (387)
++.+++. + ++++||+|+++++|++
T Consensus 324 ~~~l~~~g~~~a~~IG~V~~~~~v~~ 349 (350)
T 3m84_A 324 QELAKKHTNTKLYQIGKITNSGKVEI 349 (350)
T ss_dssp HHHHTTCTTSCEEEEEEEESSSSEEE
T ss_pred HHHHHhcCCCCeEEEEEEEeCCcEEE
Confidence 9999877 7 9999999999888876
No 2
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=100.00 E-value=7.9e-71 Score=546.18 Aligned_cols=319 Identities=51% Similarity=0.907 Sum_probs=276.0
Q ss_pred CCCchhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecC----CceEEEEeecCCCccccccccCChHHH
Q 016548 62 SEGLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG----DSYLVAGTDGVGTKLELAFETGIHDTI 128 (387)
Q Consensus 62 ~~~~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~----~~~Lv~ttD~v~tk~~~a~~~~~~~~i 128 (387)
.+++||++|||||++++++|++|++.+ .++|||||+|+++ ++.||++||++++|+++++.+++|+++
T Consensus 8 ~~~~~y~~~gv~~~~~~~~v~~i~~~~~~t~~~~v~~giGddaav~~~~~~~~~~~lv~~tD~~g~~~~~a~~~~~~~~i 87 (349)
T 3p4e_A 8 NPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKKHDTI 87 (349)
T ss_dssp -------------CHHHHHHHHHHHHHHHTCCTTEEC------CEECCCTTCSSEEEEEEEECCTHHHHHHHHTTCCSSH
T ss_pred CCCCcHHHhCCCHHHHHHHHHHHHHHhhccCCCCccccCCCCeEEEEccccCCCceEEEEcCCCCcchhHHHhcCCHHHH
Confidence 357999999999999999999998753 2799999999986 357999999999988888878889999
Q ss_pred HHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEE
Q 016548 129 GIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGI 208 (387)
Q Consensus 129 G~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~ 208 (387)
||++|++|+|||+||||+|++|+++++++++++++++++++||.++|+++||+|+||||+++|++|+++.|++++|++|.
T Consensus 88 G~~aVa~~vsDiaamGA~P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~~~~~~~l~gt~vG~ 167 (349)
T 3p4e_A 88 GIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGV 167 (349)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHTCEEEEEEEEECBTTBCTTCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEcceeEECCCcccCCcccEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred EcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCc
Q 016548 209 VKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGV 288 (387)
Q Consensus 209 v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v 288 (387)
+++++++++++++|||.|+++|++|.|++|++++|+++++.+..+.+.++ ...+.+++++|+++|++.++++++++.+
T Consensus 168 v~~~~~~~~~~a~~GD~Ii~tg~~G~~~~g~~l~~~~~~~~~~~~~~~~~--~~~l~~~ll~p~r~~~~~~~~l~~~~~v 245 (349)
T 3p4e_A 168 VEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADKNERLA--GKTIGEHLLAPTKIYIKSGLKLIAEHDI 245 (349)
T ss_dssp EEGGGCCCSTTCCTTCEEEEEECSSSTTSSHHHHHHHHHHHTCCTTCEET--TEEHHHHHHCCCCCCHHHHHHHHHHSCC
T ss_pred EcCcccccCCCCCCCCEEEEcCCcchhhhHHHHHHHHHhhccCCcccccc--hhHHHHHHhhhhHHhHHHHHHHHhcCCc
Confidence 99989999999999999999999999999999999887654433322222 2468999999999999888888888899
Q ss_pred cEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC
Q 016548 289 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG 368 (387)
Q Consensus 289 ~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~ 368 (387)
++|+|||+|||+.+|+||++|++|++||.++||+++.|+++++.++++|+||+++||+|+|||++|||++++++++.+++
T Consensus 246 ~a~~DiTggGL~~~L~e~a~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~e~~~~~~~g~gll~~v~~~~~~~~~~~l~~ 325 (349)
T 3p4e_A 246 HAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAVALLQA 325 (349)
T ss_dssp CEEEECCTTHHHHHGGGGCCTTEEEEECTTSCCCCHHHHHHHHHHTCCHHHHHTTSCTTEEEEEEECHHHHHHHHHHHHH
T ss_pred eEEEeCCcchHHHHHHHHhhhCceEEEeccCCCCCHHHHHHHHhcCCCHHHHHHhcCCCCcEEEEEcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCeEEEEEEEcCC
Q 016548 369 G-YEAYHIGEVVNGE 382 (387)
Q Consensus 369 ~-~~~~vIG~V~~g~ 382 (387)
. +++++||+|++.+
T Consensus 326 ~g~~a~vIG~V~~~~ 340 (349)
T 3p4e_A 326 EGETAWVIGEIAAAN 340 (349)
T ss_dssp TTCCEEEEEEEEECC
T ss_pred cCCCeEEEEEEeccC
Confidence 7 8999999999753
No 3
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=2.4e-68 Score=528.59 Aligned_cols=313 Identities=24% Similarity=0.376 Sum_probs=255.8
Q ss_pred CCchhhhcCcCHHHHHHHHHHHHhhCCC--CCCceEEEe-----cCCceEEEEeecCCCcccccccc-------CChHHH
Q 016548 63 EGLTYKDAGVDIDAGSELVRRIAKMAPG--IGGFGGLFP-----LGDSYLVAGTDGVGTKLELAFET-------GIHDTI 128 (387)
Q Consensus 63 ~~~~y~~~gvdi~~~~~~v~~i~~~~~~--~GdDaavi~-----~~~~~Lv~ttD~v~tk~~~a~~~-------~~~~~i 128 (387)
.+++|+++|||+++ ++++++|+....| +|.||.++. +++|.||++|||+|||+++|+.+ +.|++|
T Consensus 4 ~~~~y~~~gv~~~~-~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~pvLv~~tDGVGTKl~lA~~~~k~tg~~~~~~tI 82 (394)
T 3kiz_A 4 SSDRYMQRGVSSQK-EDVHKAIKSIDKGIYPRAFCKIIPDILGGDPEYCNIMHADGAGTKSSLAYVYWKETGDISVWKGI 82 (394)
T ss_dssp -------------------------CCCSCTTSSSCCEECTTTCCTTEEEEEEEEECTTHHHHHHHHHHHHCCTHHHHHH
T ss_pred ccccHHhcCCCCCH-HHHHHHHHHHhcCCCCCcceeecchhhcCCCCceEEEEccCCcHHHHHHHHhhhhcccccchhhh
Confidence 46899999999999 8999999887643 578888874 56899999999999999999876 569999
Q ss_pred HHHHHHHHHHHHhhhCChHHHHHHhhcCCC----CCHHHHHHHHHHHHHHH---HHcC--CeEEeecceeeCCcccCCce
Q 016548 129 GIDLVAMSVNDIVTSGAKPLFFLDYFATSH----LEVDLAEKVIKGIVDGC---QQSD--CVLLGGETAEMPDFYAAGEY 199 (387)
Q Consensus 129 G~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~----~~~e~~~~i~~Gi~~ac---~~~g--~~lvGGeT~~~p~~~~~~~~ 199 (387)
|+++|+||+|||+||||+|++|+++ +++. .+++++++|++||+++| +++| |+|+||||+++|++|.+ +
T Consensus 83 G~daVam~VNDIaamGA~Pl~~L~~-a~g~l~~~~~~e~l~~Iv~Gi~e~~~~~~~aGvg~~LVGGeTae~p~l~~~--~ 159 (394)
T 3kiz_A 83 AQDAVIMNIDDLICVGAVDNILLSS-TIGRNKNLIPGEVLAAIINGTEEVLQMLRDNGIGIYSTGGETADVGDLVRT--I 159 (394)
T ss_dssp HHHHHHHHHHHHGGGTCCSSEEEEE-EEEECTTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEECTTTBSS--E
T ss_pred hhhheEeeHHHHHhCcCchHHHHHh-hcCcCccCCCHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeeeEcCCcccC--c
Confidence 9999999999999999999999998 5443 46799999999999999 5898 69999999999999876 5
Q ss_pred eEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCc-----------hhhhHHHHHHHHHhhc-------------------
Q 016548 200 DLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSG-----------VHSNGFSLVRRVLAQS------------------- 249 (387)
Q Consensus 200 ~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G-----------~~~~G~sl~~~i~~~~------------------- 249 (387)
++++|++|++++++++++++++|||+|++++|+| .|+|||||+||++...
T Consensus 160 ~i~~t~vGiV~~~~ii~~~~ak~GD~IIgl~SsG~~~~~~~~~~~~HSNG~SLvRk~~~~~~~~~~~~~~~~~~~p~~~~ 239 (394)
T 3kiz_A 160 IVDSTVTCRMKRQDVISNENIKAGNVIVGFASYGQTSYETEYNGGMGSNGLTSARHDVFNNVLASKYPESFDPKVPENLV 239 (394)
T ss_dssp EEEEEEEEEEEGGGCCCGGGCCTTCEEEEEESSBCCTTCSSCBCCCTTSSHHHHHHHHBCTHHHHHCGGGSCTTSCGGGS
T ss_pred cEEEEEEEEEccCcccccccCCCCCEEEEECCcccccccccccCCccchHHHHHHHHHHhhhhhhccccccccccccccc
Confidence 6889999999999999999999999999999999 6999999999975211
Q ss_pred ---CCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC--CccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcH
Q 016548 250 ---GLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG--GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPA 324 (387)
Q Consensus 250 ---~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~--~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~ 324 (387)
+.++.+.++....+++++||+|||+|++.++++++.. .||+|+|||+|||.. +.|+++++++ +|+.++||+||
T Consensus 240 ~~~~~~~~~~~~~~~~~lge~LL~PTriY~~~v~~ll~~~~~~I~gmaHITGGGl~~-~~R~lp~~~~-~I~~~~wpvpp 317 (394)
T 3kiz_A 240 YSGEMNLTDPYLNVPLDAGKLVLSPTRTYAPLMKEIIHQYKGKLDGVVHCSGGGQTK-VLHFTDATTH-IIKDNLFDVPP 317 (394)
T ss_dssp SCSSBCTTCCCTTCSSCHHHHHHCCCCCCHHHHHHHHHHSTTCCSEEEECCTTGGGG-GGGGCCTTCE-EEECSCCCCCH
T ss_pred ccccccccccccccCCcHHHHHhhHHHHHHHHHHHHHHhhhccceEeeccCccchhh-hhhhcCCccE-EEcCCCCCCCH
Confidence 1223344443345899999999999999888888765 699999999999997 5589899998 89999999999
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcC
Q 016548 325 VFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNG 381 (387)
Q Consensus 325 ~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g 381 (387)
+|+|+++.+++++.||+++||||+||+++|++++++++++.+++. +++|+||+|+++
T Consensus 318 iF~~l~~~G~v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~L~~~G~~A~iIG~V~~~ 375 (394)
T 3kiz_A 318 LFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAEGMIAIAKKFNIEAKIIGRVEAP 375 (394)
T ss_dssp HHHHHHHHHTCCHHHHHHHSCTTEEEEEEECHHHHHHHHHHHHHTTCCEEEEEEEESC
T ss_pred HHHHHHHhCCCCHHHHHHhcCCcccEEEEECHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 999999999999999999999999999999999999999999877 899999999976
No 4
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=100.00 E-value=2.4e-67 Score=520.66 Aligned_cols=322 Identities=54% Similarity=0.914 Sum_probs=278.8
Q ss_pred chhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecC-----CceEEEEeecCCCccccccccCChHHHHH
Q 016548 65 LTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG-----DSYLVAGTDGVGTKLELAFETGIHDTIGI 130 (387)
Q Consensus 65 ~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~-----~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~ 130 (387)
.+|+++||||++++++|++|++.. .++|||||+|+.+ ++.||++||++++|+||++.+++|+++|+
T Consensus 3 ~~y~~~gv~~~~~~~~i~~i~~~~~~~~~~~v~~giGdd~a~~~~~~~~~~~~~lv~~tD~~~~~~~~~~~~~~~~~iG~ 82 (346)
T 2btu_A 3 NAYKQAGVDIEAGYEAVSRMKKHVQTTMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTIGI 82 (346)
T ss_dssp ----------CCC-CCTTTTTTTTGGGCCTTEECC---CCCEEECTTCCCSSEEEEEEEEECCTTHHHHHHHCCCSSHHH
T ss_pred hhHHHhCCCHHHHHHHHHHHHHHHhhccCCCccccccceEEEEecCccCCCCceEEEecccCCchHHHHHHhcCcchHHH
Confidence 489999999999999999998654 2789999999986 67899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEc
Q 016548 131 DLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVK 210 (387)
Q Consensus 131 ~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~ 210 (387)
++|++|+|||+||||+|++++++++++++++++++++++||.++|+++||+|+||||+++|++|+++++++++|++|.++
T Consensus 83 ~ava~~vsDi~a~Ga~P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~ 162 (346)
T 2btu_A 83 DAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVD 162 (346)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSTTSCSSCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeEeeeEEEEcCCcccCCCccEEEEEEEEEc
Confidence 99999999999999999999999988889999999999999999999999999999999999999888999999999999
Q ss_pred CCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcC-CcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCcc
Q 016548 211 KDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSG-LSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVK 289 (387)
Q Consensus 211 ~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~-~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~ 289 (387)
+++++++++++|||.|++++++|.|++|++++|+.+.+.+ ......++.....+.+.+++|+++|.+.++++++++.++
T Consensus 163 ~~~~~~~~~a~~GD~ii~~g~~G~~~~g~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~l~p~~~~~~~~~~ll~~~~v~ 242 (346)
T 2btu_A 163 KKKIVTGEKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGELSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVY 242 (346)
T ss_dssp TTSCCCSTTCCTTCEEEEEECSSSTTSCHHHHHHHHHSSCCC----CCSSSCSCHHHHHTCCCCCCHHHHHHHHHHSCCC
T ss_pred cccccCccCCCCCCEEEEECCchhhhhHHHHHHHHHhhccccccCccchhhhhHHHHHHhhHHHHHHHHHHHHHHhCCce
Confidence 9899999999999999999999999999999998765333 112222222234689999999999988777788888899
Q ss_pred EEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC
Q 016548 290 GIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG 369 (387)
Q Consensus 290 a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~ 369 (387)
+|+|||+|||+.+|+||+++++|++|+.++||+++.|+++++.++++|++|+++||+|+|||++|++++++++++.+++.
T Consensus 243 a~~DiS~GGL~~~L~ema~s~vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~g~gll~~v~~~~~~~~~~~l~~~ 322 (346)
T 2btu_A 243 GMAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLEEQ 322 (346)
T ss_dssp CCEECCTTHHHHHTGGGCCTTEEEEECTTSSCCCHHHHHHHHHHTCCHHHHTTTCCTTEEEEEEECTTTHHHHHHHHHHH
T ss_pred EEEeCCCChHHHHHHHHHhCCeeEEEeecCCCCCHHHHHHHHhcCCCHHHHHHHhCCcCcEEEEEcHHHHHHHHHHHHhC
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999988776
Q ss_pred -CCeEEEEEEEcCCceEE
Q 016548 370 -YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 370 -~~~~vIG~V~~g~gv~~ 386 (387)
.++++||+|+++++|++
T Consensus 323 g~~~~~IG~V~~~~~v~~ 340 (346)
T 2btu_A 323 GETARIIGRTVQGAGVTF 340 (346)
T ss_dssp TCCEEEEEEEEESSSEEE
T ss_pred CCCeEEEEEEecCCeEEE
Confidence 88999999998777765
No 5
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.1e-66 Score=516.29 Aligned_cols=322 Identities=51% Similarity=0.882 Sum_probs=265.6
Q ss_pred chhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecC-----CceEEEEeecCCCccccccccCChHHHHH
Q 016548 65 LTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG-----DSYLVAGTDGVGTKLELAFETGIHDTIGI 130 (387)
Q Consensus 65 ~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~-----~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~ 130 (387)
.|||+|||||++|++++++|++.+ .++|||||+|+++ ++.||++||++++|+||++.+++|+++||
T Consensus 5 ~~y~~~gv~~~~g~~~~~~i~~~~~~~~~~~v~~g~GdD~av~~~~~~~~~~~~lv~stD~~~~~~~~~~~~~~~~~iG~ 84 (348)
T 2z01_A 5 KAYKQAGVDIEAGYQAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSALGYRQPVLISGTDGVGTKLKLAFLLDRHDTIGI 84 (348)
T ss_dssp --------------CHHHHHHHHHHHHCCTTEECC-----CEECGGGGCCSSEEEEEEEEECCTHHHHHHHHTCCSSHHH
T ss_pred hhHHHhCccHHHHHHHHHHHHHHHHhhCCCCceeccCCccEEEecCcccCCCcceeeecccccchHHHHHHhCCHHHHHH
Confidence 589999999999999999998754 3789999999975 56799999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEc
Q 016548 131 DLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVK 210 (387)
Q Consensus 131 ~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~ 210 (387)
++|++|+|||+||||+|++++++++++++++++++++++||.++|+++||+|+||||+++|++|+++++++++|++|.++
T Consensus 85 ~ava~~vsDlaa~Ga~P~~~~~~l~~~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~ 164 (348)
T 2z01_A 85 DCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAIVKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAE 164 (348)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHTCEEEECCEEC--------CEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEECceeeecCCcccCCCeeEEEEEEEEEc
Confidence 99999999999999999999999987889999999999999999999999999999999999998878999999999999
Q ss_pred CCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhh-cCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCcc
Q 016548 211 KDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQ-SGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVK 289 (387)
Q Consensus 211 ~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~-~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~ 289 (387)
+++++++++++|||.|++++++|.|++|++++|+.+.. .+......++.+...+.+.+++|+++|.+.++++++++.++
T Consensus 165 ~~~~l~~~~a~~GD~ii~~g~~G~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~p~~~~~~~~~~l~~~~~v~ 244 (348)
T 2z01_A 165 KERLITGETIQAGDALVGLPSSGLHSNGYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIK 244 (348)
T ss_dssp GGGCCCSTTCCTTCEEEEEECSSSTTSCHHHHHHHHHTTSCCCTTSCCTTCSSCHHHHHHCCCCCCHHHHHHHHHHSCCC
T ss_pred cccccCccCCCCCCEEEEECCchHHHhHHHHHHHHHhhhccCCcccccccccchHHHHHhhHHHHHHHHHHHHHhcCCce
Confidence 88899999999999999999999999999998877543 22222222211134688999999988988777777878899
Q ss_pred EEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC
Q 016548 290 GIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG 369 (387)
Q Consensus 290 a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~ 369 (387)
+|+|||+|||+.+|+||+++++|++|+.++||+++.|+++++.++++|++|+++||+|+|||++|++++++++++.+++.
T Consensus 245 a~~DiSdGGL~~~L~em~~s~vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~g~gll~~v~~~~~~~~~~~l~~~ 324 (348)
T 2z01_A 245 GMAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLVEWLSER 324 (348)
T ss_dssp EEEECCTTHHHHHHHHHSCTTEEEEEETTSSCCCHHHHHHHHHTTCCHHHHHHHSCTTEEEEEEECHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcHHHHHHHHhccCceEEEeccCCCCCHHHHHHHHcCCCCHHHHHHHhCCCCeEEEEEcHHHHHHHHHHHHhc
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999988876
Q ss_pred -CCeEEEEEEEcCCceEE
Q 016548 370 -YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 370 -~~~~vIG~V~~g~gv~~ 386 (387)
.++++||+|+++++|++
T Consensus 325 g~~~~~IG~V~~~~~v~~ 342 (348)
T 2z01_A 325 GEPAYIIGEVAKGAGVSF 342 (348)
T ss_dssp TCCCEEEEEEEESSEEEE
T ss_pred CCCeEEEEEEecCCeEEE
Confidence 88999999998877765
No 6
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=100.00 E-value=1.1e-66 Score=515.98 Aligned_cols=316 Identities=24% Similarity=0.403 Sum_probs=254.9
Q ss_pred CchhhhcCcCHHHHHHHHHHHHhhCCC--CCCceEEEe-----cCCceEEEEeecCCCcccccccc-------CChHHHH
Q 016548 64 GLTYKDAGVDIDAGSELVRRIAKMAPG--IGGFGGLFP-----LGDSYLVAGTDGVGTKLELAFET-------GIHDTIG 129 (387)
Q Consensus 64 ~~~y~~~gvdi~~~~~~v~~i~~~~~~--~GdDaavi~-----~~~~~Lv~ttD~v~tk~~~a~~~-------~~~~~iG 129 (387)
+.+|+++|||.++ +++.++|+....| ++.||.++. +++|.||++|||+|||+++|+.+ +.|+++|
T Consensus 4 ~~~y~~~gv~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~pvLv~~tDGVGTKl~lA~~~~k~~g~~~~~~tIG 82 (389)
T 3mdo_A 4 DQRYNLRGVSASK-EDVHNAIKNIDKGIFPKAFCKIIPDILGGDPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIA 82 (389)
T ss_dssp ----------------------CCSSCSSTTSSSCCEECTTTCCTTEEEEEEEEECTTHHHHHHHHHHHHCCTTHHHHHH
T ss_pred chhhhhcCCCccH-HHHHHHHHHhhcCCCCCcceeecchhhcCCCCceEEEecCCCcHHHHHHHHhhhhccccchHHHHH
Confidence 3789999999999 7999999887654 488999986 56899999999999999999876 5699999
Q ss_pred HHHHHHHHHHHhhhCChHHHHHHhhcCC----CCCHHHHHHHHHHHHHHH---HHcC--CeEEeecceeeCCcccCCcee
Q 016548 130 IDLVAMSVNDIVTSGAKPLFFLDYFATS----HLEVDLAEKVIKGIVDGC---QQSD--CVLLGGETAEMPDFYAAGEYD 200 (387)
Q Consensus 130 ~~aVa~nvnDIaa~GA~Pl~~ld~l~~~----~~~~e~~~~i~~Gi~~ac---~~~g--~~lvGGeT~~~p~~~~~~~~~ 200 (387)
+++|+||+|||+||||+|++|+++ +++ ..+++++++|++||+++| +++| |+++||||+++|+++.+ ++
T Consensus 83 ~daVamnVNDIaamGA~Pl~~L~~-a~g~l~~~~~~e~l~~Iv~Gi~e~c~~~~~aGigv~LVGGeTae~p~l~~~--~~ 159 (389)
T 3mdo_A 83 QDALIMNIDDLLCVGAVDNILVSS-TIGRNKLLVPGEVISAIINGTDELLAELREMGVGCYATGGETADVGDLVRT--II 159 (389)
T ss_dssp HHHHHHHHHHHHTTTCCSSEEEEE-EEEECTTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEECTTTBSS--EE
T ss_pred hHheEeeHHHHHhCcCChHHHHHh-hcCcCccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEeCccceECCCcccC--cc
Confidence 999999999999999999999987 433 356899999999999999 4886 99999999999998875 46
Q ss_pred EEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCc-----------hhhhHHHHHHHHHhhc--------------------
Q 016548 201 LSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSG-----------VHSNGFSLVRRVLAQS-------------------- 249 (387)
Q Consensus 201 lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G-----------~~~~G~sl~~~i~~~~-------------------- 249 (387)
+++|++|++++++++++++++|||+|++++|+| .|+|||||+||++...
T Consensus 160 v~~t~vGiV~~~~ii~~~~ak~GD~IIgl~S~G~~~~~~~~~~~~HSNG~SLvRk~~~~~~~~~~~~~~~~~~~p~~~~~ 239 (389)
T 3mdo_A 160 VDSTVTCRMKRSDVIDNKNIQGGDVIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAAVPKELVY 239 (389)
T ss_dssp EEEEEEEEEEGGGCCCGGGCCTTCEEEEEESSBCCTTCSSCBCCCCSSSHHHHHHHHBCTHHHHHCGGGSCTTSCTTTTT
T ss_pred EEEEEEEEEccccccccccCCCCCEEEEECCcccccccccccCCccccHHHHHHHHHHhhhhhhcccccccccccccccc
Confidence 889999999999999999999999999999999 5999999999975211
Q ss_pred --CCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC--CccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHH
Q 016548 250 --GLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG--GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 250 --~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~--~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~ 325 (387)
+.++.+.++....+++|+||+|||+|++.++++++.. .||+|+|||+|||..++ |+. +++ ..|+.++||+||+
T Consensus 240 ~~~~~~~~~~~~~~~~lge~LL~PTriY~~~v~~ll~~~~~~V~gmaHITGGGl~~~l-r~~-~~~-~~i~~~~wpvppi 316 (389)
T 3mdo_A 240 SGGLKLTDKIEELGIDAGKMVLSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGAQTKVM-HFV-ENK-RVTKDNLFPIPPL 316 (389)
T ss_dssp CSSBCTTCEETTTTEEHHHHHHCCCCCCHHHHHHHHHHHGGGCCEEEECCTTGGGGGG-GGC-SSE-EEEECSCCCCCHH
T ss_pred ccccccccccccCCCcHHHHHhhhHHHHHHHHHHHHHHhhhcceEEeeccCcChhhhh-hhc-CCc-EEecCCCCCCCHH
Confidence 1112223333235799999999999998877776643 69999999999999988 444 466 4888999999999
Q ss_pred HHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCc--eEE
Q 016548 326 FKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEG--VSY 386 (387)
Q Consensus 326 ~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~g--v~~ 386 (387)
|+|+++.++++++||+++||||+||+++|++++++++++.+++. +++++||+|+++++ |++
T Consensus 317 F~~l~~~G~v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~l~~~G~~A~iIG~V~~~~~~~V~l 380 (389)
T 3mdo_A 317 FRTIQEQSGTDWSEMYKVFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELII 380 (389)
T ss_dssp HHHHHHHHCCCHHHHHHHSCTTEEEEEEECGGGHHHHHHHHHHTTCCEEEEEEEEECSSCEEEE
T ss_pred HHHHHHhcCCCHHHHHHhccCcceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEEeCCCCeEEE
Confidence 99999999999999999999999999999999999999999877 89999999998754 544
No 7
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-58 Score=453.28 Aligned_cols=297 Identities=52% Similarity=0.925 Sum_probs=263.5
Q ss_pred CCCCceEEEecC-----CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHH
Q 016548 90 GIGGFGGLFPLG-----DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLA 164 (387)
Q Consensus 90 ~~GdDaavi~~~-----~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~ 164 (387)
.+|+|+++|+++ ++.|+.++|+.++++||++.++.++++||++|++|+|||+||||+|++++++|++++.+++++
T Consensus 9 ~~g~f~~~~~~~~~~~~~~~l~~~~D~~v~~~~~a~~~d~~~~iG~~ava~~vsDiaamGA~P~~~l~~l~~~~~~~~~l 88 (334)
T 2v9y_A 9 DLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVT 88 (334)
T ss_dssp ------CCCCTTTTTCSSEEEEEEEECCTTHHHHHHHHTCCTTHHHHHHHHHHHHHHTTTCEEEEEEEEEEESSCCHHHH
T ss_pred cCcccceeeecccccCCCceEEeecCcCCcchhhheecCCHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhcCCCCCHHHH
Confidence 479999999875 678999999999999999999989999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCC-CCCCCCCEEEEeCCCchhhhHHHHHH
Q 016548 165 EKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDG-KNIVPGDVLIGLPSSGVHSNGFSLVR 243 (387)
Q Consensus 165 ~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~-~~a~~GD~Ii~~gs~G~~~~G~sl~~ 243 (387)
+++++||.++|+++||+++||||+++|++|+++.++|++|++|.+++++++++ ++++|||.|+++|++|.|++|++++|
T Consensus 89 ~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~~a~~GD~Ii~~g~~G~~~~g~~~~~ 168 (334)
T 2v9y_A 89 EAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLVR 168 (334)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEEGGGCSCCGGGCCTTCEEEEEECSSSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCeEEeEEeEEcCCcccCCceeEEEEEEEEEccccccccccCCCCCCEEEEECCccHHHHHHHHHH
Confidence 99999999999999999999999999999988889999999999998889999 99999999999999999999999988
Q ss_pred HHHhhcCCcccCCCCCc--hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCC
Q 016548 244 RVLAQSGLSLKDQLPSE--NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWK 321 (387)
Q Consensus 244 ~i~~~~~~~~~~~~p~~--~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ip 321 (387)
+++++.+..+.+.+|.+ ...+.+.+++|+++|.+.++++++++.+++|+|||+|||+.+|+||+++++|++|+.++||
T Consensus 169 ~~~~~~~~~~~~~~~~d~~~~~l~~~~~~p~~~~~~~~~~l~~~~~v~a~~DiS~GGL~~~L~ema~s~vg~~I~~~~iP 248 (334)
T 2v9y_A 169 KIVAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWR 248 (334)
T ss_dssp HHHHHSSCCTTSBCCTTSCSSBHHHHHTCCCCCCHHHHHHHHHTTCCCEEEECCTTHHHHHSGGGSCTTEEEEEEGGGSC
T ss_pred hHhhhccCccccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHhhcCeEEEEecccCC
Confidence 76643333333333421 1367899999999888888888877789999999999999999999989999999999999
Q ss_pred CcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcC----CceEE
Q 016548 322 VPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNG----EGVSY 386 (387)
Q Consensus 322 i~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g----~gv~~ 386 (387)
+++.++++++.++++|++|+++||+|.+||++|||++++++++.+++. .++++||+|+++ ++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~gll~~v~~~~~~~~~~~l~~~g~~~~~IG~V~~~~~~~~~V~~ 318 (334)
T 2v9y_A 249 IPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVVARAEGSPRVKV 318 (334)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHCCTTEEEEEEECGGGHHHHHHHHHHTTCCEEEEEEEEEC----CCEEE
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhcCCCeEEEEEEeccCCCCCeEEE
Confidence 999999999999999999999999998899999999999999998776 899999999885 46764
No 8
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=100.00 E-value=6.7e-50 Score=391.74 Aligned_cols=273 Identities=18% Similarity=0.198 Sum_probs=232.0
Q ss_pred CCCCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHH
Q 016548 89 PGIGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKV 167 (387)
Q Consensus 89 ~~~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i 167 (387)
.++||||||++++ +..||+|||+++++.||...+ +|+++||++|++|+|||+||||+|++++++|+.++.++++++++
T Consensus 22 ~g~GdDaavi~~~~~~~lv~ttD~~~~~~hf~~~~-~p~~~G~~ava~~lsDiaamGa~P~~~l~~l~~p~~~~~~l~~i 100 (319)
T 3mcq_A 22 LGVGDDAALIQPSPGMELAVSADMLVANTHFYPNI-DPWLIGWKSLAVNISDMAAMGAQPRWATLTIALPEADEDWISKF 100 (319)
T ss_dssp TCCCGGGGCCCCCTTCEEEEEEEEEECCTTSCCCS-CHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEESSCCHHHHHHH
T ss_pred cCCCCCEEEEeeCCCCeEEEEecccCcccCCCCCC-CHHHHHHHHHHHHHHHHHHcCCchHHhEEEEECCCCCHHHHHHH
Confidence 4789999999986 678999999999999997665 79999999999999999999999999999998667899999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++||.++|+++||+|+||||++.| +++++|++|.+++++++++++++|||.|+++|++|.|++|++++++.+
T Consensus 101 ~~Gi~~~~~~~g~~lvGGdt~~~~-------~~i~~t~iG~v~~~~~~~~~~a~~GD~ii~tg~~G~~~~g~~~~~~~~- 172 (319)
T 3mcq_A 101 AAGFFACAAQFDIALIGGDTTRGP-------LTISVQIMGETPPGASLLRSTARADDDIWVSGPLGDAALALAAIQGRY- 172 (319)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEESS-------CEEEEEEEEEECTTCCCCSSCCCTTEEEEECSCCSHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHcCCeEEeeEcCCCC-------eEEEEEEEEeeCCCcccccCCCCCCCEEEEECCccHHHHHHHHHhcCC-
Confidence 999999999999999999999742 579999999999889999999999999999999999999998765311
Q ss_pred hcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHH
Q 016548 248 QSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 248 ~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~ 325 (387)
. ++.. ...+.+.+++|++ +++.... ++ +.+++|+|||+ ||+.+|+||+. |++|++|+.++||+++.
T Consensus 173 ----~----~~~~~~~~~~~~~~~p~~-~~~~~~~-l~-~~v~a~~DiS~-GL~~~L~e~a~~s~vg~~i~~~~iP~~~~ 240 (319)
T 3mcq_A 173 ----P----LSDTELAACGKALHQPQP-RVVLGQA-LR-GLAHSALDISD-GLLADLGHILEHSQVGAEVWLKAIPKSEV 240 (319)
T ss_dssp ----C----CCHHHHHHHHHHHHCCCC-CHHHHHH-TT-TTEEEEEECSS-CHHHHHHHHHHHHTCEEEEEGGGSCCCHH
T ss_pred ----C----CChHHHHHHHHHHhCCCc-cHHHHHH-Hh-ccCcEEEEccH-hHHHHHHHHHHHcCCcEEEeecccCCCHH
Confidence 1 1111 2346778888874 4443322 33 56999999999 79999999995 99999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHhcCCC--eeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 326 FKWIQQAGRIEDSEMRRTFNMG--IGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 326 ~~~i~~~~~i~~~e~~~~fn~G--~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
+.++++.++ +.++ .|++| ++||++|||++++++++.+++. .++++||+|++++++++
T Consensus 241 ~~~~~~~~~--~~~~--~l~~G~d~~ll~~v~~~~~~~~~~~l~~~g~~~~~IG~V~~~~~~~~ 300 (319)
T 3mcq_A 241 VSAHSQEVA--IQKM--ILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRITDTQQLVI 300 (319)
T ss_dssp HHHTTTSHH--HHHH--HHHCSCCCCEEEEEEGGGHHHHHHHHHHTTCCCEEEEEEESSCCEEE
T ss_pred HHHHHhcCC--HHHH--HHcCCCceeEEEEEcHHHHHHHHHHHHHcCCCcEEEEEEEeCCceEE
Confidence 998887654 3444 35555 5799999999999999999877 89999999999888653
No 9
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=100.00 E-value=4.2e-49 Score=389.47 Aligned_cols=297 Identities=18% Similarity=0.210 Sum_probs=237.2
Q ss_pred CCCCchhhhcCcCHHH----HHHHHHHHHhhC-CC-CCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHH
Q 016548 61 TSEGLTYKDAGVDIDA----GSELVRRIAKMA-PG-IGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVA 134 (387)
Q Consensus 61 ~~~~~~y~~~gvdi~~----~~~~v~~i~~~~-~~-~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa 134 (387)
-.+...|++.+++..- .+++|+++.+.. +. +||||||++++++.||++||+++++.||.+.++ |+++||++|+
T Consensus 24 ~~~~~~~~~~~~~m~~~~~~e~~li~~~~~~~~~~~~GdDaAvi~~~~~~lv~ttD~~~~~~~f~~~~~-p~~iG~~ava 102 (342)
T 3c9u_A 24 VLEENLYFQGSFTMRLKELGEFGLIDLIKKTLESKVIGDDTAPVEYCSKKLLLTTDVLNEGVHFLRSYI-PEAVGWKAIS 102 (342)
T ss_dssp -----------CCCBHHHHCHHHHHHHHHHHHTCSSTTSSSEEEEETTEEEEEEEEEEEBTTTBCTTSC-HHHHHHHHHH
T ss_pred HHHhhHHhhcccccccccCCHHHHHHHHHHhcCCCCCCCceEEEecCCCeEEEEeCccCCCcccCCCCC-HHHHHHHHHH
Confidence 3445679999999543 667888876543 22 299999999988899999999999999988776 9999999999
Q ss_pred HHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCC
Q 016548 135 MSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDS 213 (387)
Q Consensus 135 ~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~ 213 (387)
+|+|||+||||+|++++++|+ |.+++.++++++++||.++|+++||+|+||||++++ ++++++|++|. +++
T Consensus 103 ~~vsDlaamGA~P~~~l~~l~~p~~~~~~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~------~~~i~vt~vG~--~~~ 174 (342)
T 3c9u_A 103 VNVSDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSE------KIGISVFLVGE--TER 174 (342)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEECTTSBHHHHHHHHHHHHHHHHHHTCEEEEEEEEECS------SCEEEEEEEEE--ESS
T ss_pred HHHHHHHHCCCchHHhEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEeeEeeecC------CeEEEEEEEEe--cCc
Confidence 999999999999999999996 446889999999999999999999999999999863 46899999998 467
Q ss_pred ccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEec
Q 016548 214 VVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAH 293 (387)
Q Consensus 214 ~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~D 293 (387)
.+++++++|||.|+++|++|.|++|++++++ .... .......+.+.+++|++.+... +. ++ +.+++|+|
T Consensus 175 ~l~~~~a~~GD~IivtG~~G~~~~g~~~l~~----~~~~----~~~~~~~~~~~~~~p~~~~~~~-~~-~~-~~v~a~~D 243 (342)
T 3c9u_A 175 FVGRDGARLGDSVFVSGTLGDSRAGLELLLM----EKEE----YEPFELALIQRHLRPTARIDYV-KH-IQ-KYANASMD 243 (342)
T ss_dssp CCCSSCCCTTCEEEEESCSSHHHHHHHHHHT----TCSC----CCHHHHHHHHHHHSCCCCGGGH-HH-HH-HHCSEEEE
T ss_pred cccccCCCCCCEEEEECchhHHHHHHHHHhc----CCcc----cccccHHHHHHHhCchhhHHHH-HH-hh-ccCeEEEE
Confidence 8899999999999999999999999988653 1111 1111235678888998666432 22 22 34899999
Q ss_pred CCCchHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCCCCe
Q 016548 294 ITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEA 372 (387)
Q Consensus 294 IT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~~~~ 372 (387)
||+ ||+.+|+||+. |++|++|+.++||+++.+.++++.++++|+++...-+++++||+++||++.++ + ..+
T Consensus 244 iSd-GL~~~L~eia~~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~GGEd~~ll~~v~~~~~~~----l---~~~ 315 (342)
T 3c9u_A 244 ISD-GLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGKNPIEYALFGGEDYQLLFTHPKERWNP----F---LDM 315 (342)
T ss_dssp ESS-CHHHHHHHHHHHHTCEEEECGGGSCCCHHHHHHHHHTTCCHHHHHHHCCCCCEEEEEECGGGCCT----T---SCE
T ss_pred CCc-hHHHHHHHHHHHhCCeEEEehhcCCCCHHHHHHHHHcCCCHHHHHhcCCCceEEEEEECHHHHhh----c---CCC
Confidence 999 89999999995 99999999999999999999999999999887644456689999999976432 2 238
Q ss_pred EEEEEEEcCCceE
Q 016548 373 YHIGEVVNGEGVS 385 (387)
Q Consensus 373 ~vIG~V~~g~gv~ 385 (387)
++||+|++++++.
T Consensus 316 ~~IG~V~~~~~v~ 328 (342)
T 3c9u_A 316 TEIGRVEEGEGVF 328 (342)
T ss_dssp EEEEEEESSSSEE
T ss_pred EEEEEEEcCCCEe
Confidence 9999999877754
No 10
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=100.00 E-value=9e-48 Score=375.76 Aligned_cols=267 Identities=23% Similarity=0.272 Sum_probs=222.7
Q ss_pred CCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHHH
Q 016548 90 GIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKVI 168 (387)
Q Consensus 90 ~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i~ 168 (387)
++|||||+++ ..|+++||.+....||. +++++||++|++|+|||+||||+|++++++|+ |++++++++++++
T Consensus 18 ~~gdDaav~~---~~l~~t~D~~v~~~~~~----~~~~iG~~ava~~~sDiaamGA~P~~~~~~l~~p~~~~~~~l~~i~ 90 (314)
T 3vti_C 18 RAMEDAALLF---GNITLTTDSFTVKPLFF----PGGDIGKLAVCGTVNDASMRGAKPLFLTAAFIIEEGFPVEDLKKIV 90 (314)
T ss_dssp HHTCSSEEET---TTEEEEEEEECCSSSEE----TTEEHHHHHHHHHHHHTTTTTEEEEEEEEEEEEETTCCHHHHHHHH
T ss_pred CCCCCeEEec---CceEEEecCCccCCccc----CccHHHHHHHHHHHHHHHHcCCccceeEEEEEcCCCCCHHHHHHHH
Confidence 6799999998 47999999998887873 35699999999999999999999999999875 7778999999999
Q ss_pred HHHHHHHHHcCCeEEeecceeeCC-cccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 169 KGIVDGCQQSDCVLLGGETAEMPD-FYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 169 ~Gi~~ac~~~g~~lvGGeT~~~p~-~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
+||.++|+++||+++||||+++|. -|. .+.+++|++|.+++++++++++++|||.|+++|++|.|++|+.+.++
T Consensus 91 ~Gi~~~~~~~g~~lvGGdt~~~~~g~~~--~~~i~~t~vG~v~~~~~~~~~~a~~GD~i~~tg~~G~~~~~~~~~~~--- 165 (314)
T 3vti_C 91 KSMAEAAKEAGVKIVAGDTKVVEKGSVD--RIFINTSGIGVLYEGANVSIKNAKPGDIVLISGTIGDHGMAVMSARE--- 165 (314)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEECTTSBS--SEEEEEEEEEEECTTCCCCTTCCCTTCEEEESSCSSHHHHHHHHHHT---
T ss_pred HHHHHHHHHcCCeEEeeeeEEccCCCcC--CeEEEEEEEEEECCCccccccCCCCCCEEEEECChHHHHHHHHHhhc---
Confidence 999999999999999999999872 221 35689999999998889999999999999999999999999876542
Q ss_pred hcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHh-CCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHH
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIST-GGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~-~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~ 325 (387)
+..+...+.. ..+|...+++ .+++. +.+++|+|||+|||+.+|+||+. |++|++|+.++||+++.
T Consensus 166 --~~~~~~~~~~--------~~~~~~~~~~---~l~~~~~~v~a~~DiS~GGL~~~L~e~a~~sgvg~~I~~~~iP~~~~ 232 (314)
T 3vti_C 166 --ELQFDTPIFS--------DVAPLNGLIE---KLMTLGEAIKVLRDPTRGGVAEVLYEISKMSGVGIKIYEEKLPVKES 232 (314)
T ss_dssp --TCCCSSCCCC--------CCCCCHHHHH---HHGGGGGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEEGGGCCCCHH
T ss_pred --CCCcchhhHH--------hhccHHHHHH---HHHhccCCcEEEEeCCCcHHHHHHHHHHHHcCCeEEEehhcCCCCHH
Confidence 2222222211 1233333332 23333 57999999999999999999984 99999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhc--CC-CCeEEEEEEEcCC-ceEE
Q 016548 326 FKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGR--GG-YEAYHIGEVVNGE-GVSY 386 (387)
Q Consensus 326 ~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~--~~-~~~~vIG~V~~g~-gv~~ 386 (387)
++++++.++++|++ +||+| +||++|+|++++++++.++ +. .++++||+| +++ +|++
T Consensus 233 ~~~~~~~~~~~~l~---~~~~g-~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v-~~~~~v~l 292 (314)
T 3vti_C 233 VKSACEFMGIDFLH---LANEG-KVVVVVERDYAEKALEIMKSHEYGKDAEIIGEV-NDSKLVTI 292 (314)
T ss_dssp HHHHHHHHTCCGGG---SCCSS-CCEEEECGGGHHHHHHHHHTSTTCTTCEEEEEE-ESSSCEEE
T ss_pred HHHHHHHhCCCHHH---HHhCC-cEEEEECHHHHHHHHHHHhhCcCCCCeEEEEEE-CCCCeEEE
Confidence 99999999999964 58999 8999999999999999987 45 899999999 444 4654
No 11
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-47 Score=373.08 Aligned_cols=281 Identities=19% Similarity=0.182 Sum_probs=235.3
Q ss_pred HHHHHHHHHhhC-------CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHH
Q 016548 77 GSELVRRIAKMA-------PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 149 (387)
Q Consensus 77 ~~~~v~~i~~~~-------~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~ 149 (387)
.+++++++.+ . .++|+||||++++++.|+++||++++|+||.. +.+|+.+|+++|++|+|||+||||+|++
T Consensus 8 e~~li~~i~~-~~~~~~~~~g~gdDaavi~~~~~~lv~ttD~~~~~~~f~~-~~~p~~~G~~ava~~lsDlaa~Ga~P~~ 85 (311)
T 2yxz_A 8 ERALLARLAP-LGYPPEAPLPPGDDAGGVWAEGRAWLLKTDGFLYREVALK-GMGPFEVGFRGVAATASDLLAKMGRPLG 85 (311)
T ss_dssp HHHHHHHHTT-TTCCTTCSSCTTSSSEEEEETTEEEEEEEEEEEHHHHCCT-TCCHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHh-cCCCCCcccCCCCCEEEEecCCCeEEEEeCcCCCccccCC-CCCHHHHHHHHHHHHHHHHHHcCChhhh
Confidence 4678888875 3 27899999999977889999999999999985 5678999999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEE
Q 016548 150 FLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIG 228 (387)
Q Consensus 150 ~ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~ 228 (387)
+++++. |.+++.++++++++||.++|+++||+++||||+++++ .+|++| |.+++++.++ +++++||.|++
T Consensus 86 ~~~~~~~p~~~~~~~l~~~~~Gi~~~~~~~g~~lvGG~t~~~~~------~~i~~t--G~v~~~~~~~-~~a~~GD~i~~ 156 (311)
T 2yxz_A 86 FTLGLFLPEDLEEGFVLELVRGAAEAAKRLGAFLLGGDTNRGVE------VALTVS--GYALAEAPLP-RKALPGDLLYL 156 (311)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS------CEEEEE--EEEEESSCCC-SCCCTTCEEEE
T ss_pred heeeEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEceecCCCCC------cEEEEE--eeeCCCCccc-cCCCCCCEEEE
Confidence 999885 6678899999999999999999999999999998752 357766 9998877888 88999999999
Q ss_pred eC-CCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhc
Q 016548 229 LP-SSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVF 307 (387)
Q Consensus 229 ~g-s~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~ 307 (387)
+| ++|.|++++.++++.+ + . .. ...+.+.++.|+..+. ++++++.|++|||||+ ||+.+|+||+
T Consensus 157 ~g~~~G~~~~~~~~~~~~~---~--~--~~---~~~~~~~~~~p~~~~~----~~l~~~~v~a~~DiSd-GL~~~l~ema 221 (311)
T 2yxz_A 157 AGDRWGRTGAAIRAHYEGR---S--L--EG---FPKIREAAFYPLPRLE----LLALSGLLRGSLDSSD-GLAETLWQLA 221 (311)
T ss_dssp ESSCTTHHHHHHHHHHHTC---C--C--TT---CHHHHHHHHCCCCCGG----GGGGTTTCSEEEEESS-CHHHHHHHHH
T ss_pred eCCCcchHHHHHHHHhcCC---C--c--ch---hHHHHHHHhCchhhHH----HHHHhcCCEEEEeChH-HHHHHHHHHH
Confidence 99 9999999887765421 1 1 11 2356778888885443 3455667899999998 8999999998
Q ss_pred CCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 308 PKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 308 ~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
.+++|++|+ +||+++.+.++++.++ +|.++....+++++||++|++++++++++.+++. .++++||+|++++++++
T Consensus 222 ~s~~g~~i~--~ip~~~~~~~~~~~~~-~~~~~~l~~g~~~~ll~~v~~~~~~~~~~~l~~~g~~~~~IG~v~~~~~v~i 298 (311)
T 2yxz_A 222 DLGVGVEVE--ALPLYPDVLAFAGSEE-AALELVLYGGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGEGVYL 298 (311)
T ss_dssp TTTCEEEEC--CCCCCHHHHHHHSSHH-HHHHHHHSCCCCCEEEEEECSTTHHHHHHHHHHTTCCEEEEEEEESSSCEEE
T ss_pred HcCCcEEEE--eccCCHHHHHHHHccC-CHHHHHhhcCCCeEEEEEECHHHHHHHHHHHHhcCCCeEEEEEEEcCCceEE
Confidence 899999998 8999999999998766 7777632222346899999999999999988876 88999999998887754
No 12
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=100.00 E-value=1.6e-47 Score=377.05 Aligned_cols=286 Identities=19% Similarity=0.213 Sum_probs=232.9
Q ss_pred HHHHHHHHH-HHhhCCCCCCceEEEecC-----CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHH
Q 016548 75 DAGSELVRR-IAKMAPGIGGFGGLFPLG-----DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPL 148 (387)
Q Consensus 75 ~~~~~~v~~-i~~~~~~~GdDaavi~~~-----~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl 148 (387)
+..++++.+ ++....++|+|||+++++ +..|++++|.+....||. +++++||++|++|+|||+||||+|+
T Consensus 15 ~~~~~~i~~~~~~~~l~~gdDaavi~~~~~~~~~~~l~~t~D~~~~dp~~~----~~~~iG~~ava~~lsDlaamGA~P~ 90 (334)
T 2rb9_A 15 QLINSLFMEAFANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFF----PGGNIGKLAICGTANDVAVSGAIPR 90 (334)
T ss_dssp HHHHHHHHHHHCCTTTTTCCSSEEEEHHHHHHHCSEEEEEEEEECCSSSEE----TTEEHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHhcCccccCCCCceEEEecCcccCCCceEEEEecCcccCCccC----CcccHHHHHHHHHHHHHHHCCCchH
Confidence 344555544 333335899999999986 568999999998776663 3458999999999999999999999
Q ss_pred HHHHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeC-CcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEE
Q 016548 149 FFLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMP-DFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVL 226 (387)
Q Consensus 149 ~~ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p-~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~I 226 (387)
+++++|+ |+++++++++++++||.++|+++||+++||||+++| +-+. .+.+++|++|.+++++.+.+++++|||.|
T Consensus 91 ~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~--~~~i~~t~vG~v~~~~~~~~~~a~~GD~I 168 (334)
T 2rb9_A 91 YLSCGFILEEGLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAAD--KLFINTAGMGAIPTNIHWGAQTLTAGDIL 168 (334)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSBS--SEEEEEEEEEEECTTCCCCGGGCCTTCEE
T ss_pred HhEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEeeEeEEccCCCCC--ceEEEEEEEEEECcccccccccCCCCCEE
Confidence 9999986 577899999999999999999999999999999987 2121 35689999999998888999999999999
Q ss_pred EEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhh
Q 016548 227 IGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRV 306 (387)
Q Consensus 227 i~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~ 306 (387)
+++|++|.|++++++.++.+ .+...+. ...+|...+ +.+++++..+++|+|||+|||+.+|+||
T Consensus 169 ivtg~~G~~g~~~~~~~~~~-----~~~~~~~--------~~~~~l~~~---~~~l~~~~~v~a~~Dis~GGL~~~l~em 232 (334)
T 2rb9_A 169 LVSGTLGDHGATILNLREQL-----GLDGELV--------SDCAVLTPL---IQTLRDIPGVKALRDATRGGVNAVVHEF 232 (334)
T ss_dssp EESSCSSHHHHHHHHHHHTC-----SCTTTCC--------CCCCCCHHH---HHTTTTCTTEEEEEECCTTHHHHHHHHH
T ss_pred EEECCchHHHHHHHHhhccC-----CCChHHH--------HhhhhhHHH---HHHHHhcCCeEEEEECCCccHHHHHHHH
Confidence 99999999999987765421 1111111 112232212 2334445679999999999999999999
Q ss_pred cC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC--C-CCeEEEEEEEcCC
Q 016548 307 FP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG--G-YEAYHIGEVVNGE 382 (387)
Q Consensus 307 ~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~--~-~~~~vIG~V~~g~ 382 (387)
+. |++|++|+.++||+++.++++++.++++|++ +|++| +||++|+|++++++++.+++ . .++++||+|++++
T Consensus 233 a~~s~vg~~i~~~~iP~~~~~~~~~~~~~~~~~~---~~~~G-~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~~~ 308 (334)
T 2rb9_A 233 AAACGCGIEISESALPVKPAVRGVCELLGLDALN---FANEG-KLVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERK 308 (334)
T ss_dssp HHHHTCEEEEETTTCCCCHHHHHHHHHHCCCTTT---SCCSS-CEEEEECGGGHHHHHHHHHTSGGGTTCEEEEEEESSC
T ss_pred HHHcCCeEEEeccCCCCCHHHHHHHHHcCCCHHH---HhhcC-eEEEEEChHHHHHHHHHHhhcCCCCCEEEEEEEEeCC
Confidence 95 9999999999999999999999999999864 47888 59999999999999999876 5 8899999999887
Q ss_pred ceEE
Q 016548 383 GVSY 386 (387)
Q Consensus 383 gv~~ 386 (387)
++++
T Consensus 309 ~v~~ 312 (334)
T 2rb9_A 309 GVRL 312 (334)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7654
No 13
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=100.00 E-value=3.9e-47 Score=375.88 Aligned_cols=269 Identities=18% Similarity=0.195 Sum_probs=218.4
Q ss_pred CCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCC--CCHHHHHHH
Q 016548 90 GIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSH--LEVDLAEKV 167 (387)
Q Consensus 90 ~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~--~~~e~~~~i 167 (387)
++||||||+++++..||+|||++. +.+.+|+++||++|++|+|||+||||+|++++++|+.++ .++++++++
T Consensus 49 g~GdDaAvi~~~~~~lv~ttD~~~------~~~~~p~~~G~~ava~~lsDlaamGa~P~~~l~~l~~p~~~~~~~~l~~i 122 (345)
T 2yyd_A 49 SIGDDAGVYEHNGIIWVYTVDIIT------PVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCFNNCELDIEIFREV 122 (345)
T ss_dssp ----CCCEEEETTEEEEEEEEEEC------CSSSCHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECTTTCCHHHHHHH
T ss_pred cCCCCeEEEEECCCeEEEEeCCCC------CccCCHHHHHHHHHHHHHHHHHHcCCchHHHheeEeCCCCCCCHHHHHHH
Confidence 679999999998656999999974 235678999999999999999999999999999997554 789999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++||.++|+++||+|+||||+++|+ ..+++|++|.+++++++.+++++|||.|+++|++|.+..+..+.++
T Consensus 123 ~~Gi~~~~~~~gv~lvGGdt~~~~~------~~i~~t~vG~v~~~~~~~~~~a~~GD~Iivtg~lG~~~~~~~~~~~--- 193 (345)
T 2yyd_A 123 IRGALDKLREAKTVLLGGHTIDDKE------PKFGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEG--- 193 (345)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECSS------CEEEEEEEEECGGGCCCCSSCCCTTCEEEECSCBCHHHHHHHHHTT---
T ss_pred HHHHHHHHHHcCCEEEeeEcccCCC------ceEEEEEEEEEcCCceecCCCCCCCCEEEEECCCcHHHHHHHHHhc---
Confidence 9999999999999999999998763 4688999999998899999999999999999999975544433211
Q ss_pred hcCCcccCCCCC-chhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHH
Q 016548 248 QSGLSLKDQLPS-ENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAV 325 (387)
Q Consensus 248 ~~~~~~~~~~p~-~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~ 325 (387)
.++. ......+.+.+|.+ ....+++++.+++|+|||+|||+.+|+||++ |++|++|+.++||+++.
T Consensus 194 --------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~gGL~~~L~e~a~~sgvg~~I~~~~iPi~~~ 261 (345)
T 2yyd_A 194 --------ILKEEDINEAIENMLALND----KARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQL 261 (345)
T ss_dssp --------SSCGGGGHHHHHHHHSCSH----HHHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBCHH
T ss_pred --------CCCHHHHHHHHHHHhcccH----HHHHHHHhcCCeEEEECCCcHHHHHHHHHHHHcCCcEEEEhhcCCCCHH
Confidence 0111 11244555666653 2344566778999999999999999999997 99999999999999999
Q ss_pred HHHHHHhCCCC------------------H-HHHHHhc---CCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCC
Q 016548 326 FKWIQQAGRIE------------------D-SEMRRTF---NMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGE 382 (387)
Q Consensus 326 ~~~i~~~~~i~------------------~-~e~~~~f---n~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~ 382 (387)
++++++.+.++ + +++..+| ++| |||++|||++++++++.+++. +++++||+|++++
T Consensus 262 ~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~~~~~~llfdp~tsG-gll~~v~~~~~~~~~~~l~~~g~~a~vIG~v~~~~ 340 (345)
T 2yyd_A 262 SENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSG-GLLFTINKEKLEKIDETAKELEVNYWIIGETIAEN 340 (345)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTTEECCCCHHHHHHHHSCCSSC-CEEEEECGGGGGTHHHHHHHHTCCCEEEEEEESSS
T ss_pred HHHHHHcCCCCcchhhhHHHHHhhccccCHHHHHhhccCcccCc-eEEEEEcHHHHHHHHHHHHHcCCCEEEEEEEeeCC
Confidence 99999986432 2 2321345 444 799999999999999998876 8999999999998
Q ss_pred ceEE
Q 016548 383 GVSY 386 (387)
Q Consensus 383 gv~~ 386 (387)
++++
T Consensus 341 ~~~~ 344 (345)
T 2yyd_A 341 VLEV 344 (345)
T ss_dssp SEEE
T ss_pred ceee
Confidence 8764
No 14
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=100.00 E-value=8.1e-47 Score=373.31 Aligned_cols=279 Identities=19% Similarity=0.223 Sum_probs=230.6
Q ss_pred HHHHHHHHHH-HhhC----CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHH
Q 016548 75 DAGSELVRRI-AKMA----PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF 149 (387)
Q Consensus 75 ~~~~~~v~~i-~~~~----~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~ 149 (387)
+...++++++ ++.. .++||||||+++++ .||++||+++++.|+. +++++||++|++|+|||+||||+|++
T Consensus 17 k~~~~~i~~~~~~~~~~~~~~~GdDaav~~~~~-~lv~ttD~~~~~p~~~----~~~~iG~~ava~~lsDlaamGA~P~~ 91 (343)
T 2z1u_A 17 RASHRLISDLFLRHFDNPILGTLNDAARLDLTG-PLAMSTDSYTVDPIFF----PGGDIGTLAVHGTVNDVSMLGARPRY 91 (343)
T ss_dssp HHHHHHHHHTHHHHHCCHHHHTCSSSCCCCCCS-SEEEEEEEECCSSSEE----TTEEHHHHHHHHHHHHHHTTTEEEEE
T ss_pred cCcHHHHHHHHHhhcCCcCCCCCCceEEEECCC-eEEEEeCCCCcCCeec----CCccHHHHHHHHHHHHHHHcCCeeHH
Confidence 5566777775 3322 37899999999987 9999999999998883 45689999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeC-CcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEE
Q 016548 150 FLDYFA-TSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMP-DFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLI 227 (387)
Q Consensus 150 ~ld~l~-~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p-~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii 227 (387)
++++|+ |.++++++++++++||.++|+++|++++||||+++| +.|. .+++++|++|.+++++.+.++++++||.|+
T Consensus 92 ~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~--~~~i~~t~vG~v~~~~~~~~~~a~~GD~I~ 169 (343)
T 2z1u_A 92 LSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACD--KMFINTTGIGEILVDPAPSGDRARPGDAIL 169 (343)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTSSS--SEEEEEEEEEEECCSSCCCGGGCCTTCEEE
T ss_pred hheeeecCCCCCHHHHHHHHHHHHHHHHHhCCEEECcEEEEcCCCCCC--CeEEEEEEEEEECCCccccccCCCCCCEEE
Confidence 999986 557899999999999999999999999999999987 3333 468999999999988889999999999999
Q ss_pred EeCCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHh-CCccEEecCCCchHhchHhhh
Q 016548 228 GLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIST-GGVKGIAHITGGGFTDNIPRV 306 (387)
Q Consensus 228 ~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~-~~v~a~~DIT~GGL~~~L~~~ 306 (387)
++|++|.|++++.+.++ +..+...+. ...+|...+++. +++. +.+++|+|||+|||+.+|+||
T Consensus 170 vtg~~G~~g~~~~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~v~a~~Dis~GGL~~~L~e~ 233 (343)
T 2z1u_A 170 ISGSMGDHGLTILSQRQ-----GLNFAADVC--------SDSASLNRVVEK---LVLEVGDIHVLRDPTRGGLATTLNEI 233 (343)
T ss_dssp ECSCSSHHHHHHHHHTT-----TCCCCTTCC--------CCCCCCHHHHHH---HHHHTCCCCEEECCCTTHHHHHHHHH
T ss_pred EECCccHHHHHHHHHhc-----ccCcchHHH--------HhhhhHHHHHHH---HHhccCCceEEEeCCCchHHHHHHHH
Confidence 99999999988876542 111111111 112232223333 3333 679999999999999999999
Q ss_pred cC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC--C-CCeEEEEEEEc
Q 016548 307 FP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG--G-YEAYHIGEVVN 380 (387)
Q Consensus 307 ~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~--~-~~~~vIG~V~~ 380 (387)
+. |++|++|+.++||+++.+.++++.++++|++ +|++| +||+++++++++++++.+++ . .++++||+|++
T Consensus 234 a~~s~vg~~I~~~~iP~~~~~~~~~~~~~~~~~~---~~~~G-~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~ 307 (343)
T 2z1u_A 234 AGQSQAVCHVLETAVPVRESVRNGCSFLGLDPLY---LANEG-KLICILPEERAEAALAVLREGPHGEHAARIGSVKS 307 (343)
T ss_dssp HHHHTSEEEEEGGGSCCCHHHHHHHHHTTCCTTS---SCCSS-CCEEEECHHHHHHHHHHHHTSTTGGGCEEEEEEEC
T ss_pred HHhCCceEEEecCCCCCCHHHHHHHHhcCCCHHH---Hhccc-eEEEEECHHHHHHHHHHHhhccCCCCeEEEEEEEe
Confidence 95 9999999999999999999999998888854 58888 79999999999999998876 5 78999999998
No 15
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=100.00 E-value=3.2e-46 Score=369.62 Aligned_cols=265 Identities=19% Similarity=0.234 Sum_probs=217.9
Q ss_pred CCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-C-CCCCHHHHHH
Q 016548 90 GIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-T-SHLEVDLAEK 166 (387)
Q Consensus 90 ~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~-~~~~~e~~~~ 166 (387)
+.||||||+++++ ..|++|||++. +.+.+|+.+||++|++|+|||+||||+|++++++|+ | ++.+++++++
T Consensus 47 ~~gdDaavi~~~~~~~lv~ttD~~~------~~~~~p~~~G~~ava~~lsDiaamGA~P~~~l~~l~~p~~~~~~~~l~~ 120 (347)
T 3u0o_A 47 ETRDDAAVYDLGNGTSVISTTDFFM------PIVDNPFDFGRIAATNAISDIFAMGGKPIMAIAILGWPINKLSPEIARE 120 (347)
T ss_dssp SSCCSSEEEECTTSEEEEEEEEEES------CCSSCHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECTTTSCHHHHHH
T ss_pred CCCCceEEEEeCCCcEEEEEecCCC------CCccCHHHHHHHHHHHHHHHHHHcCCchHHHHhheeCCCCCCCHHHHHH
Confidence 4599999999974 56999999863 235789999999999999999999999999999986 4 4678999999
Q ss_pred HHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHH
Q 016548 167 VIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVL 246 (387)
Q Consensus 167 i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~ 246 (387)
+++||.++|+++||+|+||||+++|+ ..+++|++|.+++++++++++++|||.|+++|++|.+..+..+.++
T Consensus 121 i~~Gi~~~~~~~gv~lvGGdt~~~~~------~~~~~t~vG~v~~~~~~~~~~a~~GD~iiltg~~G~~~~~~~~~~~-- 192 (347)
T 3u0o_A 121 VTEGGRYACRQAGIALAGGHSIDAPE------PIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKS-- 192 (347)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECSS------CEEEEEEEEEEEGGGCCCSSCCCTTCEEEESSCBCHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCEEEcceeccCCC------cEEEEEEEEEECCcceecCCCCCCCCEEEEeCCccHHHHHHHHHhC--
Confidence 99999999999999999999999873 2467789999998899999999999999999999976544333221
Q ss_pred hhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcH
Q 016548 247 AQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPA 324 (387)
Q Consensus 247 ~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~ 324 (387)
. ++.. .....+.+.+|.+. ..++++.+.+++|+|||+|||+.+|+||++ |++|++|+.++||+++
T Consensus 193 -----~----~~~~~~~~~~~~~~~~~~~----~~~l~~~~~v~a~~DiT~gGL~~~L~e~a~~sgvg~~I~~~~iPi~~ 259 (347)
T 3u0o_A 193 -----L----LKPEHQGLATEVMCRMNIA----GASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLP 259 (347)
T ss_dssp -----C----CCGGGTTHHHHHHHSCCTH----HHHHTTCTTEEEEEECCSSHHHHHHHHHHHHHTEEEEEETTTSCBCT
T ss_pred -----c----CChHHHHHHHHHHHhhchH----HHHHHhcCCCEEEEcCCCcHHHHHHHHHHHHcCCeEEEeeccCCCCH
Confidence 1 1111 12345666666542 234455677999999999999999999997 9999999999999999
Q ss_pred HHHHHHHhCCCCHHHHH----------------Hhc----CCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcC
Q 016548 325 VFKWIQQAGRIEDSEMR----------------RTF----NMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNG 381 (387)
Q Consensus 325 ~~~~i~~~~~i~~~e~~----------------~~f----n~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g 381 (387)
.++++++.+.++..+++ +.| +++.|||++|++++++++++.+++. +++++||+|++.
T Consensus 260 ~~~~~~~~g~~~~~~~~n~~~~~~~~~~l~~~~~~ll~dp~~sggll~~v~~~~~~~~~~~l~~~g~~a~~IG~V~~~ 337 (347)
T 3u0o_A 260 GVEEYIKLGAVPGGTERNFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGELVPA 337 (347)
T ss_dssp THHHHHTTCCCCHHHHHHHHHHGGGBCCCCHHHHHHHTCCCTTCCEEEEECHHHHHHHHHHHHHTTCCCCCCEEEEEC
T ss_pred HHHHHHHcCCCCchhhhhhhhhcccccccchHHHHhccCcccCccEEEEEcHHHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 99999998776655542 223 5565799999999999999999877 899999999874
No 16
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=100.00 E-value=1.5e-45 Score=364.55 Aligned_cols=270 Identities=18% Similarity=0.216 Sum_probs=219.1
Q ss_pred CCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-C-CCCCHHHHHHH
Q 016548 90 GIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-T-SHLEVDLAEKV 167 (387)
Q Consensus 90 ~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~-~~~~~e~~~~i 167 (387)
|+||||||++.++..||+|||.+.+.+|+ |+.+||++|++|+|||+||||+|+++++++. | +..+.++++++
T Consensus 49 g~GDDaAvi~~~~~~lv~ttD~~~~~v~~------P~~~G~~Av~~~lsDiaAmGa~P~~~l~~l~~p~~~~~~~~l~~~ 122 (345)
T 2zod_A 49 SIGDDAGVYEHNGIIWVYTVDIITPVVND------PYLWGAISTANALSDVYAMGGIPVNALAISCFNNCELDIEIFREV 122 (345)
T ss_dssp ----CCCEEEETTEEEEEEEEEECCSSSC------HHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECTTTCCHHHHHHH
T ss_pred CCCCCeEEEecCCcEEEEEecCCCCcccC------HHHHHHHHHHHHHHHHHHcCCCchhhhhhhhcCCCcCCHHHHHHH
Confidence 78999999999999999999998776654 6799999999999999999999999998775 3 34688999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++||.++|+++|++++||||...+ +..+++|++|.+++++++.++++++||.|++++++|.+..+..+.+.
T Consensus 123 ~~Gi~~~~~~~gv~lvGGdt~~~~------~~~i~~t~~G~~~~~~~~~~~~a~~GD~iivtg~lG~~~~~~~~~~~--- 193 (345)
T 2zod_A 123 IRGALDKLREAKTVLLGGHTIDDK------EPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEG--- 193 (345)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECS------SCEEEEEEEEECGGGCCCCSSCCCTTCEEEECSCBCHHHHHHHHHTT---
T ss_pred HHHHHHHHHhccCcccCCceEECC------cCcccceeEEEecCccccccccCCCCCeEEEcCCCcchhHHHHHhhc---
Confidence 999999999999999999999875 34688899999999999999999999999999999998765443221
Q ss_pred hcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCcHHH
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVPAVF 326 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~ 326 (387)
. .. ........+.+..+.+ ....++....+++|+|+|+|||+.+|.||+. |++|++|+.+++|+++.+
T Consensus 194 --~--~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~v~a~~Dit~~GL~~~L~eia~~S~vg~~I~~~~iP~~~~~ 262 (345)
T 2zod_A 194 --I--LK---EEDINEAIENMLALND----KARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLS 262 (345)
T ss_dssp --S--SC---GGGGHHHHHHHHSCSH----HHHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBCHHH
T ss_pred --c--cc---chhhhhhHHhhhccch----hHhhhhcccccceeeccccchHHHHHHHHHhccCCCeEeeccccCcCHHH
Confidence 1 10 0111233344444432 2333455678999999999999999999996 999999999999999999
Q ss_pred HHHHHh-------------------CCCCHHHHHHhc---CCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCc
Q 016548 327 KWIQQA-------------------GRIEDSEMRRTF---NMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEG 383 (387)
Q Consensus 327 ~~i~~~-------------------~~i~~~e~~~~f---n~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~g 383 (387)
+++++. .+.+++++..+| .+| ||||+|||++++++++.+++. .++++||+|+++++
T Consensus 263 ~~~~~~g~~p~~~~~n~~~~~~~~~~~~~~~~~~ll~DpqTSG-GLL~tv~~~~~~~~~~~l~~~g~~a~~IG~V~~~~~ 341 (345)
T 2zod_A 263 ENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSG-GLLFTINKEKLEKIDETAKELEVNYWIIGETIAENV 341 (345)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTTEECCCCHHHHHHHHCCCSSC-CEEEEECGGGGGTHHHHHHHHTCCCEEEEEEESSSS
T ss_pred HHHHHcCCCchhhHHHHHHHHHHhhcCCCHHHHHhccCccccC-cEEEEEcHHHHHHHHHHHHHcCCCeEEEEEEEcCCC
Confidence 988875 355666666566 345 699999999999999999877 89999999999999
Q ss_pred eEE
Q 016548 384 VSY 386 (387)
Q Consensus 384 v~~ 386 (387)
+.+
T Consensus 342 ~~V 344 (345)
T 2zod_A 342 LEV 344 (345)
T ss_dssp EEE
T ss_pred CEE
Confidence 875
No 17
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=100.00 E-value=2e-45 Score=362.30 Aligned_cols=269 Identities=21% Similarity=0.262 Sum_probs=220.4
Q ss_pred CCCCCceEEEecCCceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhc-CCCCCHHHHHHH
Q 016548 89 PGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFA-TSHLEVDLAEKV 167 (387)
Q Consensus 89 ~~~GdDaavi~~~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~-~~~~~~e~~~~i 167 (387)
.++||||||++++++.||++||+++++.||. +++++||++|++|+|||+||||+|++++++++ |++.+.++++++
T Consensus 38 ~~~gdDaav~~~~~~~lv~ttD~~~~~~~~~----~~~~iG~~ava~~lsDl~a~Ga~P~~~~~~l~~p~~~~~~~l~~~ 113 (338)
T 2z1e_A 38 LDALDDGATIPFGDKHIVFTIDGHTVKPLFF----PGGDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRV 113 (338)
T ss_dssp ---CCSCEEEEETTEEEEEEEEEECCSSSEE----TTEEHHHHHHHHHHHHHHTTTCEEEEEEEEEEEETTCCHHHHHHH
T ss_pred cCCCCceEEEEeCCCEEEEEeCCCccCcccc----CCccHHHHHHHHHHHHHHHcCCchhHhEEEEecCCCCCHHHHHHH
Confidence 4789999999998888999999999998873 24589999999999999999999999999986 457789999999
Q ss_pred HHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHh
Q 016548 168 IKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLA 247 (387)
Q Consensus 168 ~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~ 247 (387)
++||.++|+++|++|+||||+++|.. ..+.+++|++|.+++.. +++++++||.|+++|++|.|++++.+.++.
T Consensus 114 ~~Gi~~~~~~~g~~lvGGdt~~~~~~---~~~~i~~t~~G~v~~~~--~~~~a~~GD~i~vtg~~G~~g~~~~~~~~~-- 186 (338)
T 2z1e_A 114 LKSMDETAREVPVPIVTGDTKVVEDK---IEMFVITAGIGIAEHPV--SDAGAKVGDAVLVSGTIGDHGIALMSHREG-- 186 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEESSS---CCEEEEEEEEEEESSCC--CTTCCCTTCEEEESSCSSHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCEEECcEEEEcCCC---CceEEEEEEEEEECCcc--CccCCCCCCEEEEECCccHHHHHHHhhhcc--
Confidence 99999999999999999999998731 15789999999998763 789999999999999999999888765431
Q ss_pred hcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHH-h-C-CccEEecCCCchHhchHhhhcC-CCceEEEEcCCCCCc
Q 016548 248 QSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIIS-T-G-GVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWKVP 323 (387)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~-~-~-~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ipi~ 323 (387)
..+...+. ..++|...++ .++++ . . .+++|+|||+|||+.+|+||+. +++|++|+.++||++
T Consensus 187 ---~~~~~~~~--------~~~~~~~~~~---~~l~~~~~~~~v~a~~Dis~GGL~~~l~ema~~s~~g~~I~~~~iP~~ 252 (338)
T 2z1e_A 187 ---IAFETELK--------SDVAPIWDVV---KAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIR 252 (338)
T ss_dssp ---CCCSSCCC--------CCCCCCHHHH---HHHHHHHCGGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEEGGGSCCC
T ss_pred ---CCCChhHH--------HhhhhHHHHH---HHHHHhcccCceEEEEeCCCChHHHHHHHHHHhcCCeEEEEcccCCCC
Confidence 11211111 1112221122 23333 3 3 6999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC--C-CCeEEEEEEEcCC-c-eEE
Q 016548 324 AVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG--G-YEAYHIGEVVNGE-G-VSY 386 (387)
Q Consensus 324 ~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~--~-~~~~vIG~V~~g~-g-v~~ 386 (387)
+.+.++++.++++|+ ++||+| +||++|++++++++++.+++ . .++++||+|++++ + +.+
T Consensus 253 ~~~~~~~~~~~~~~l---~~~~~G-~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~~~~~~v~i 316 (338)
T 2z1e_A 253 PEVRAASEMLGISPY---DVANEG-KVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLL 316 (338)
T ss_dssp HHHHHHHHHHTCCGG---GSCCSS-CCEEEECGGGHHHHHHHHHTSSTTTTCEEEEEEESSSTTCEEE
T ss_pred HHHHHHHHHcCCChh---hccCCc-eEEEEECHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCeEEE
Confidence 999999999888884 458998 79999999999999999886 3 7899999999876 4 543
No 18
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=100.00 E-value=6.8e-45 Score=365.66 Aligned_cols=276 Identities=18% Similarity=0.186 Sum_probs=216.3
Q ss_pred CCCCceEEEecC--CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHH-HHHhhc-CCCCCH----
Q 016548 90 GIGGFGGLFPLG--DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLF-FLDYFA-TSHLEV---- 161 (387)
Q Consensus 90 ~~GdDaavi~~~--~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~-~ld~l~-~~~~~~---- 161 (387)
++|+||||++++ +..||+|||.+. +.+.+|+++||++|++|+|||+||||+|++ ++++|+ |..+++
T Consensus 67 ~~GdDaAV~~~~~~~~~lv~ttD~f~------p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~p~~~~~~~~~ 140 (394)
T 3fd5_A 67 GIGMDTCVIPLRHGGLSLVQTTDYIY------PIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERD 140 (394)
T ss_dssp CTTSSSEEEECSSTTCEEEEEEEEEC------CCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEEETTSCHHHHH
T ss_pred cCCCCeeEEecCCCCcEEEEEeeccC------CcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEecCCCCChhHHH
Confidence 789999999996 568999999972 335779999999999999999999999998 568886 445666
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHH
Q 016548 162 DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSL 241 (387)
Q Consensus 162 e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl 241 (387)
++++++++||.++|+++||+|+||||..+|. ..+++|++|.+++++++.+++++|||.|+++|++|.|..++..
T Consensus 141 ~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~p~------~~i~~t~~G~v~~~~~l~~~~a~~GD~Iiltg~lG~~~~~~~~ 214 (394)
T 3fd5_A 141 KVMPLIIQGFKDAAEEAGTSVTGGQTVLNPW------IVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVH 214 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEEEESS------CEEEEEEEEEECGGGCCCTTCCCTTCEEEESSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEeeeEEEcCC------cEEEEEEEEEEcCCceecCCCCCCCCEEEEECCccHHHHHHHH
Confidence 5899999999999999999999999999873 3688899999998899999999999999999999999765432
Q ss_pred HHHHHhhcC--CcccCCCCCchhHHHHHhcccch---hhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEE
Q 016548 242 VRRVLAQSG--LSLKDQLPSENTTLGEALMAPTV---IYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVI 315 (387)
Q Consensus 242 ~~~i~~~~~--~~~~~~~p~~~~~~~e~ll~P~~---~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~I 315 (387)
+.++..+ ..+...++. ..+.+++.+|.+ .+.+....++.++.+|+|+|||+|||+++|+||+. |++|++|
T Consensus 215 --~~l~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~l~~~~~~l~~~~~v~A~~DvT~gGL~~~L~ema~aSgvg~~I 290 (394)
T 3fd5_A 215 --QWLDIPEKWNKIKLVVTQ--EDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSF 290 (394)
T ss_dssp --HC------------CCCH--HHHHHHHHHHHHHHHSCSHHHHHHHHHTTCCEEEECCTTHHHHHHHHHHTTCSSSEEE
T ss_pred --HHhhccchhhhhhccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEeCCCcHHHHHHHHHHHhcCCcEEE
Confidence 1111100 011222332 233333333321 12233455666788999999999999999999997 8999999
Q ss_pred EcCCCCCcHHHHHHHHhCCCCHHHHHHh---cCCCeeEEEEEeccCHHHHHHhhcCC-----CCeEEEEEEEcCCc
Q 016548 316 YEDSWKVPAVFKWIQQAGRIEDSEMRRT---FNMGIGMVLVVSKETSHTILEGGRGG-----YEAYHIGEVVNGEG 383 (387)
Q Consensus 316 d~~~ipi~~~~~~i~~~~~i~~~e~~~~---fn~G~gll~~v~~e~~~~v~~~l~~~-----~~~~vIG~V~~g~g 383 (387)
+.++||+++.+.++++.++ +++.++.- .++| |||++|++++++++++.+++. .++++||+|+++++
T Consensus 291 ~~~~iPi~~~~~~~~~~~~-~~~~l~~g~d~etsG-gLL~~v~~~~~~~~~~~l~~~~~~~g~~a~~IG~V~~~~~ 364 (394)
T 3fd5_A 291 VIHNLPVLAKMAAVSKACG-NMFGLMHGTCPETSG-GLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNR 364 (394)
T ss_dssp EEEEEEEETTHHHHHHHTT-TSSCGGGTCCCCSSC-CEEEEECHHHHHHHHHHHHCC---CCCCCEEEEEEEESSS
T ss_pred EeccCCCCHHHHHHHHhcc-hhhhhhcccCcccCC-cEEEEECHHHHHHHHHHHHhccccCCCCEEEEEEEEeCCc
Confidence 9999999999999998876 33322111 1777 799999999999999988753 68999999998875
No 19
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=100.00 E-value=2.1e-38 Score=334.84 Aligned_cols=285 Identities=22% Similarity=0.311 Sum_probs=216.0
Q ss_pred CCCchhhhcCcCHHHHHHHHHHHHhhCCCCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHH
Q 016548 62 SEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDI 140 (387)
Q Consensus 62 ~~~~~y~~~gvdi~~~~~~v~~i~~~~~~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDI 140 (387)
.++++||. ...+++.+.. +++||||||+++++ ..|++++|+ |+.+.+..|+.+|+++|++|+|||
T Consensus 42 sehc~~k~-------~~~~~~~~~~--~g~gdDAavi~~~~~~~l~~t~e~-----h~~p~~~~P~~gg~~av~~~lrDi 107 (615)
T 1vk3_A 42 SEHCGYSH-------TKKYIRRLPK--TGFEGNAGVVNLDDYYSVAFKIES-----HNHPSAIEPYNGAATGVGGIIRDV 107 (615)
T ss_dssp SHHHHCTT-------THHHHHTSCB--CTTSSSTTEEESSSSEEEEEEEEE-----CHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCccccCc-------hHHHHhhccC--CCCCCceEEEEeCCCeEEEEEecc-----cCCccccChhHHHHHHHHHHhccc
Confidence 34566774 2244443322 57899999999974 679999995 343334567899999999999999
Q ss_pred hhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCC
Q 016548 141 VTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNI 220 (387)
Q Consensus 141 aa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a 220 (387)
+||||+|++++++|+++ ++++++++||+++|+++|++++||||.++|. |+.+++ ++++++|.+++++++++..+
T Consensus 108 ~a~GA~P~a~l~~l~~g----~~l~~~~~Gi~~~~~~~GvplvGG~t~~~~~-y~~~p~-~~~~~vG~v~~~~~~~~~~~ 181 (615)
T 1vk3_A 108 LAMGARPTAIFDSLHMS----RIIDGIIEGIADYGNSIGVPTVGGELRISSL-YAHNPL-VNVLAAGVVRNDMLVDSKAS 181 (615)
T ss_dssp HHTTCEEEEEEEEEEES----SCCHHHHHHHHHHHHHHTCCEEEEEEEECGG-GTTCCE-EEEEEEEEEETTSCCCSSCC
T ss_pred cccCceehhhhhhhhHH----HHHHHHHHHHHHHHHHcCCCEeEEEEEEecC-CCCCce-EEEEEEEEEcHHHccCccCC
Confidence 99999999999999876 6899999999999999999999999998876 544444 88999999998888888889
Q ss_pred CCCCEEEEeCC----CchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCC
Q 016548 221 VPGDVLIGLPS----SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITG 296 (387)
Q Consensus 221 ~~GD~Ii~~gs----~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~ 296 (387)
++||.|+++|+ .|.|++++ +++.+..... .....+. ...+.+ +.+++.++++.+.+.+++|+|+|+
T Consensus 182 ~~GD~Iil~G~~tg~~G~~g~~~--~~~~~~~~~~-~~~~v~~-~~~~~e------~~~~~~~~~l~~~~~i~a~~Dis~ 251 (615)
T 1vk3_A 182 RPGQVIVIFGGATGRDGIHGASF--ASEDLTGDKA-TKLSIQV-GDPFAE------KMLIEAFLEMVEEGLVEGAQDLGA 251 (615)
T ss_dssp STTCEEEEEESCBCSCC-------------------CGGGCCC-CCHHHH------HHHHHHHHHHHHHTCCSEEEECCT
T ss_pred CCcCEEEEECCCCCCCcccHHHH--HHHHhhcccc-cccccCc-CCHHHH------HHHHHHHHHHHhcCCeeEEEeCCC
Confidence 99999999877 67887653 3332221100 0011111 112222 234566777777788999999999
Q ss_pred chHhchHhhhcC-CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEE
Q 016548 297 GGFTDNIPRVFP-KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYH 374 (387)
Q Consensus 297 GGL~~~L~~~~~-s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~v 374 (387)
|||..+|+||+. +++|++|++++||+++. +++|.|++...+++ +|+++|+|++++++++.+++. .++++
T Consensus 252 gGL~~~l~ema~~sg~G~~Idl~~vP~~~~--------~~~~~e~l~sesq~-r~l~~v~~~~~~~~~~~~~~~g~~~~v 322 (615)
T 1vk3_A 252 GGVLSATSELVAKGNLGAIVHLDRVPLREP--------DMEPWEILISESQE-RMAVVTSPQKASRILEIARKHLLFGDV 322 (615)
T ss_dssp THHHHHHHHHHHHTTCEEEEEGGGSCBSST--------TCCHHHHHHCCCSS-EEEEEECGGGHHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHHHHHHhCCceEEEEecccCCCCC--------CCCHHHHHHcCCCC-eEEEEEcHHHHHHHHHHHHHcCCCEEE
Confidence 999999999996 99999999999998764 57888887666666 699999999999999998876 89999
Q ss_pred EEEEEcCCceE
Q 016548 375 IGEVVNGEGVS 385 (387)
Q Consensus 375 IG~V~~g~gv~ 385 (387)
||+|++++.+.
T Consensus 323 IG~Vt~~~~l~ 333 (615)
T 1vk3_A 323 VAEVIEEPVYR 333 (615)
T ss_dssp EEEEESSCEEE
T ss_pred EEEEEeCCeEE
Confidence 99999876543
No 20
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=8.9e-38 Score=336.01 Aligned_cols=269 Identities=16% Similarity=0.224 Sum_probs=206.4
Q ss_pred CCCCceEEEecCC-ceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCC-H---HHH
Q 016548 90 GIGGFGGLFPLGD-SYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLE-V---DLA 164 (387)
Q Consensus 90 ~~GdDaavi~~~~-~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~-~---e~~ 164 (387)
++||||||+++++ ..+++++|+ |+.+.+..|+.+|+++|++|+|||+||||+|++++++|++++++ + +++
T Consensus 64 g~gdDaavi~~~~~~~l~~~ve~-----h~~p~~~~P~~gg~~~v~~~l~Di~amGA~P~~~l~~l~~~~~~~~~~~~~l 138 (725)
T 3ac6_A 64 GPGENAGVVRVGEGWAVAFKIES-----HNHPSAVEPFQGAATGVGGILRDIMSMGARPIALLDSLRFGPPEEARSRYLL 138 (725)
T ss_dssp CTTSSSEEEEEETTEEEEEEEEE-----CHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEESCTTSHHHHHHH
T ss_pred ecCCceEEEEeCCCeEEEEEeCc-----CCCCcccChHHHHHHHHhhhhhhhhccCChhHhheeeEEcCCCCCccHHHHH
Confidence 7899999999874 578999985 34334456889999999999999999999999999999877764 3 689
Q ss_pred HHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeC----CCchhhhHHH
Q 016548 165 EKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLP----SSGVHSNGFS 240 (387)
Q Consensus 165 ~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~g----s~G~~~~G~s 240 (387)
+++++|+.++|+++|++++||||.++|++ ..+.+ ++++++|.+++++++ ++++++||.|+++| +.|.|+++++
T Consensus 139 ~~~~~Gi~~~~~~~G~~lvgG~t~~~~~~-~~~~~-i~~~~vG~v~~~~~~-~~~a~~GD~ii~~G~~~g~~G~gg~~~~ 215 (725)
T 3ac6_A 139 KGVVSGIAFYGNAIGVPTVGGDLYFHEGY-RENPL-VNAMCLGLLREEHLK-RSRASLGRPIYYAGAKTGRDGIGGAAFA 215 (725)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEEECGGG-SSSCE-EEEEEEEEEEGGGCC-CBCCCTTCEEEEEESCBCSCCC------
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEEEeCCc-CCCce-EEEEEEEEeChhhcc-cCCCCCCCEEEEECCCCCCCcchHHHHH
Confidence 99999999999999999999999998863 32344 889999999876644 78899999999977 7888988764
Q ss_pred HHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCC
Q 016548 241 LVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDS 319 (387)
Q Consensus 241 l~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ 319 (387)
. +.+... .....|. .++++.++.+ .+++.++++.+.+.+++|+|+|+|||+.+|+||+. +++|++|++++
T Consensus 216 ~--~~~~~~---~~~~~p~--v~~g~~~~e~--~~~~~~~~l~~~~~i~a~~Di~~gGL~~~l~ema~~sg~g~~i~l~~ 286 (725)
T 3ac6_A 216 S--RELKEE---KAEDRPA--VQVGDPFLGK--LLMEATLEAIELDLVEGVQDMGAAGLTSSLSELAHKSGLGVELHLDL 286 (725)
T ss_dssp -----------------------CCCHHHHH--HHHHHHHHHHHTTCEEEEEECCTTHHHHHHHHHHHHTTSEEEEEGGG
T ss_pred H--Hhhccc---cccCCcc--cccCCHHHHH--HHHHHHHHHHhcCCeeEEEeCCCChHHHHHHHHHHhcCCeEEEEecc
Confidence 3 222111 0011221 1222333332 25666777777788999999999999999999996 99999999999
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhcCCCe-eEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 320 WKVPAVFKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 320 ipi~~~~~~i~~~~~i~~~e~~~~fn~G~-gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
+|+++. +++|.|++ |+++. +|+++|+|++++++++.+++. .++++||+|++++++.
T Consensus 287 vP~~~~--------~~~~~e~~--~se~q~~ll~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~~~~~~ 344 (725)
T 3ac6_A 287 VPTREE--------GMTPEELL--LSESQERMVLVPKEGKEKALEEVFGRWGLDCVPVARTIPERVFR 344 (725)
T ss_dssp SCBSSS--------SCCHHHHH--HCCCSSEEEEEECTTCHHHHHHHHHHTTCCEEEEEEEESSSEEE
T ss_pred CCCCcC--------CCCHHHHH--hcCCcCcEEEEEChHHHHHHHHHHHHcCCCEEEEEEEEeCCeEE
Confidence 998764 57888875 55553 599999999999999998877 8999999999877654
No 21
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=2.3e-35 Score=317.28 Aligned_cols=261 Identities=14% Similarity=0.111 Sum_probs=210.8
Q ss_pred CCC-CceEEEecC--CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCC-CHH---
Q 016548 90 GIG-GFGGLFPLG--DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHL-EVD--- 162 (387)
Q Consensus 90 ~~G-dDaavi~~~--~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~-~~e--- 162 (387)
.+| +||||++++ +..+++++|+.+... ..+|+.+|+++|++|+|||+||||+|++++++++++++ +++
T Consensus 425 ~pg~~DaaVi~~~~~~~~la~s~d~~~~~~-----~~dP~~~g~~AVaeav~di~a~Ga~Pl~~~~~l~~g~~~~~~~~~ 499 (725)
T 3ac6_A 425 LPGKGDAAVLWIKGTRLGVAAKVDQNPRYS-----RLHPRLGAMHALAEACRNVSVVGAKPLAYTDGLNLGSPETPEGYH 499 (725)
T ss_dssp CCSCCSSEEEEETTSSEEEEEEEECCHHHH-----HHCHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECSCSSSHHHHH
T ss_pred cCCCCceEEEEeCCCCeEEEEEEcCCCCee-----eeCHHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCChhHHH
Confidence 578 999999987 468999999975432 23467999999999999999999999999999988776 453
Q ss_pred HHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCc-eeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHH
Q 016548 163 LAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGE-YDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSL 241 (387)
Q Consensus 163 ~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~-~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl 241 (387)
++.++++||.++|+++|++++||||+.++..+.... .+++++++|.++.++++++..+++||.|+++++.|.|.+|..+
T Consensus 500 ~l~~~v~Gi~~a~~~~gv~ivgG~ts~~~~~~~~~i~ptl~i~~vG~v~~~~~i~~~~~~~GD~lil~g~~g~~~ggs~l 579 (725)
T 3ac6_A 500 ELAETIAGLKEASEALGVPVVSGNVSLYNESGGKRIPPTAMVGVVGVLEVDKRAEMGFRRPGEVLLLIGEERGELGASEV 579 (725)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCEETTEECCCEEEEEEEEEEEGGGCCBSSCCSTTCEEEEESCSCCBCTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCCeeeeeeeecCCCCCCccCCceEEEEEEEechhhccChhhCCCCCEEEEEcCCCCCccHHHH
Confidence 789999999999999999999999999876543211 3688999999987778888999999999999999999888888
Q ss_pred HHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCC
Q 016548 242 VRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSW 320 (387)
Q Consensus 242 ~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~i 320 (387)
++++++.. .+..|.. .+ + +.+.+.+.+.++++++.|++|||||+|||+.+|+||+. +++|++|+.+.
T Consensus 580 ~~~~~~~~----~~~~p~~--d~-~----~~~~~~~~v~~l~~~~~v~a~~Dis~GGL~~~L~ema~~~~~G~~i~~~~- 647 (725)
T 3ac6_A 580 LYLLTGKE----FGHPPRL--DL-G----REKAVQEAIRDLIQRGLTRTAHDVAEGGLLLALAEMTFPYGVGATVEVRE- 647 (725)
T ss_dssp HHHHHSCC----CSCCCCC--CH-H----HHHHHHHHHHHHHHTTSCSBEEECCTTHHHHHHHHTTTTTCCCEEEECSC-
T ss_pred HHHHhccc----CCCCCCC--CH-H----HHHHHHHHHHHHHhcCCEEEEEeCCCCcHHHHHHHHHhcCCCcEEEEeCc-
Confidence 87765322 1223321 11 1 12346667778888888999999999999999999985 99999999753
Q ss_pred CCcHHHHHHHHhCCCCHHHHHHhcCCCee-EEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceE
Q 016548 321 KVPAVFKWIQQAGRIEDSEMRRTFNMGIG-MVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVS 385 (387)
Q Consensus 321 pi~~~~~~i~~~~~i~~~e~~~~fn~G~g-ll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~ 385 (387)
+. +..+|+++.| ||++|++++++++++.+++. .++++||+|++ +.+.
T Consensus 648 ~~-----------------~~~Lf~e~~G~~vv~v~~~~~~~~~~~l~~~g~~~~~IG~v~~-~~~~ 696 (725)
T 3ac6_A 648 EG-----------------LEALFGEAPSRVLFTVEKTRLQEATLLLEERGLPYRVLGETGG-KSLT 696 (725)
T ss_dssp CS-----------------HHHHTCBCSSCEEEEECGGGHHHHHHHHHHTTCCEEEEEEECS-SEEE
T ss_pred ch-----------------HHHhhCCCCCeEEEEEcHHHHHHHHHHHHhCCCCeEEEEEEeC-CEEE
Confidence 10 1246988888 99999999999999988776 88999999864 4444
No 22
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.93 E-value=2.9e-25 Score=248.41 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=193.3
Q ss_pred CCCceEEEecC---CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHH-Hhhc----CCCCC-H
Q 016548 91 IGGFGGLFPLG---DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFL-DYFA----TSHLE-V 161 (387)
Q Consensus 91 ~GdDaavi~~~---~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~l-d~l~----~~~~~-~ 161 (387)
+|+||||+++. +..+++++|..... . ..+|+..|+.||++|++||+|||++|+.-+ .+++ +++++ .
T Consensus 684 p~~DaAVi~~~~~~~~gla~s~g~~p~~----~-~~dP~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~~~~g~P~~~ 758 (1303)
T 3ugj_A 684 PVADCAVTTASLDSYYGEAMSIGERAPV----A-LLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGED 758 (1303)
T ss_dssp ECCSSEEEESSTTCSCEEEEEEEECGGG----G-GTCHHHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEECBTTSTTHH
T ss_pred CCCCeEEEEEeCCCCeEEEEEEecCCCc----c-ccCHHHHHHHHHHHHHHHhhcCCCccHHHeEeecccccccCCCchH
Confidence 47999999974 46799999987422 1 245789999999999999999999999844 4443 46665 4
Q ss_pred HHHHHHHHHHH-HHHHHcCCeEEeecceeeCCc-c--------cCCceeEEEEEEEEEcC-CCccCCCCCCCCCEEEEe-
Q 016548 162 DLAEKVIKGIV-DGCQQSDCVLLGGETAEMPDF-Y--------AAGEYDLSGFAVGIVKK-DSVVDGKNIVPGDVLIGL- 229 (387)
Q Consensus 162 e~~~~i~~Gi~-~ac~~~g~~lvGGeT~~~p~~-~--------~~~~~~lsgtavG~v~~-~~~l~~~~a~~GD~Ii~~- 229 (387)
+.+.++++|+. ++|+++|++++||+++.+... + -+.+.+++++++|.+++ ++.+++...++||.|+++
T Consensus 759 ~~L~~a~~g~~~d~c~~lgvpiiGGkdSlsn~t~~~~~g~~~~v~~P~TlvitavG~v~dv~~~vt~~~k~~Gd~LilV~ 838 (1303)
T 3ugj_A 759 AGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLID 838 (1303)
T ss_dssp HHHHHHHHHHHTTHHHHHTCEEEEEEEECBCEEEECCC--CEEEECCCEEEEEEEEEESCGGGCCCSCCCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeeccccCccceecccCCCcCccCCCCceEEEEEEECCCcCcccCcccCCCCCEEEEEE
Confidence 78889999999 999999999999998854200 0 01134678899999986 688888888999988775
Q ss_pred -CCCchhhhHHHHHHHHHhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC
Q 016548 230 -PSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP 308 (387)
Q Consensus 230 -gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~ 308 (387)
+....+..|..+ ..++.. +....|... .+ +.+ +...+.++.+++++.|+++||+|+|||+.+|.||+.
T Consensus 839 lg~~~~~LGGS~l-a~~~g~----~g~~~P~vd-~~-~~l----k~~~~~v~~li~~G~v~AahDvSdGGLa~aL~Ema~ 907 (1303)
T 3ugj_A 839 LGKGHNALGATAL-AQVYRQ----LGDKPADVR-DV-AQL----KGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAF 907 (1303)
T ss_dssp TTTTCCCCTTSHH-HHHTTC----CCSCCCCCC-CH-HHH----HHHHHHHHHHHHTTCCSEEEECCTTHHHHHHHHHHH
T ss_pred CCCCCCCccHHHH-HHHhCc----ccCCCCCCC-CH-HHH----HHHHHHHHHHHHcCCeEEEEeCCCChHHHHHHHHHH
Confidence 422222222223 333332 223344311 01 111 112345667788899999999999999999999985
Q ss_pred -CCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CC--eEEEEEEEcCCce
Q 016548 309 -KGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YE--AYHIGEVVNGEGV 384 (387)
Q Consensus 309 -s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~--~~vIG~V~~g~gv 384 (387)
+++|++|+.+.+|+++. ..+|++.+|.|++|++++.+++++.+++. ++ +.+||+|+++..+
T Consensus 908 as~vG~~Idl~~ip~~~~---------------~~LF~E~~G~vv~V~~~~~~~v~~~l~~~gi~~~a~~IG~V~~~~~l 972 (1303)
T 3ugj_A 908 AGHCGVQVDIAALGDDHL---------------AALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQALAGDRF 972 (1303)
T ss_dssp HHTSEEEEECGGGCSCHH---------------HHHHCCCSEEEEEEEGGGHHHHHHHHHHTTCGGGEEEEEEEESSSEE
T ss_pred hCCceEEEEecCCCCchh---------------HHHhCCCCCeEEEEEHHHHHHHHHHHHhCCCCCceEEEEEEcCCCcE
Confidence 89999999988886531 13588888899999999999998888766 65 7999999977655
Q ss_pred EE
Q 016548 385 SY 386 (387)
Q Consensus 385 ~~ 386 (387)
.+
T Consensus 973 ~i 974 (1303)
T 3ugj_A 973 VI 974 (1303)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 23
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.89 E-value=7.5e-24 Score=223.69 Aligned_cols=213 Identities=13% Similarity=0.068 Sum_probs=159.3
Q ss_pred CCCCceEEEecC-CceEEEEeecCCCccccccccCChHHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCC-CHHH-HHH
Q 016548 90 GIGGFGGLFPLG-DSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHL-EVDL-AEK 166 (387)
Q Consensus 90 ~~GdDaavi~~~-~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~-~~e~-~~~ 166 (387)
++|+||||++++ +..+++++|... +. ...+|+.+|+.||++|++||+||||+|++++++++++++ ++++ +.+
T Consensus 396 ~pg~DaaV~~~~~~~~~~~t~d~~~----~~-~~~dP~~~g~~Avaealsdl~A~Ga~p~~~~~~l~~~~~~~~~~~l~~ 470 (615)
T 1vk3_A 396 PPGFGAAVMRIKRDGGYSLVTHSRA----DL-ALQDTYWGTLIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGLSA 470 (615)
T ss_dssp CGGGSCEEEEEETTEEEEEEEECCH----HH-HTTCHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECSCTTTCHHHHHH
T ss_pred ccCCCeEEEEEcCCcEEEEEecCCC----cc-cccCHHHHHHHHHHHHHHHHHHcCCccceeEEEEecCCCCCchHHHHH
Confidence 678999999986 467999999873 21 235688999999999999999999999998888876554 3344 888
Q ss_pred HHHHHHHHHHHcCCeEEeecceeeCCcc-cCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHH
Q 016548 167 VIKGIVDGCQQSDCVLLGGETAEMPDFY-AAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRV 245 (387)
Q Consensus 167 i~~Gi~~ac~~~g~~lvGGeT~~~p~~~-~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i 245 (387)
+++|+.++|+++|++++|||++.++... ...+.+++.|++|.++.++.++ +++|| |+++|..... +.
T Consensus 471 ~~~G~~~~~~~~g~~~igG~~S~~~~~~~~~~ppt~~i~a~G~v~~~~~~~---~~~Gd-l~l~g~~~~~---~~----- 538 (615)
T 1vk3_A 471 MMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAK---PKPSK-VFAVGWNDFE---LE----- 538 (615)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCCEETTEECCCEEEEEEEEEECGGGCCC---CCSEE-EEEEEESSCC---HH-----
T ss_pred HHHHHHHHHHHcCCCcccccccccCcCCCCcCCCeeEEEEEEEecCCcccc---CCCCe-EEEECCCCCC---HH-----
Confidence 9999999999999999999998643210 0112468889999998766665 79999 9999843211 00
Q ss_pred HhhcCCcccCCCCCchhHHHHHhcccchhhHHHHHHHHHhC-CccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcH
Q 016548 246 LAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTG-GVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPA 324 (387)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~e~ll~P~~~~v~~~~~l~~~~-~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~ 324 (387)
...+ ..+.+..+++++ .+++|||||+| +|.||+ +++|++|+.+++|+.+
T Consensus 539 -----------------~~~~--------~~~~~~~~~~~~~~v~a~~DvSdG----~l~em~-s~~g~~i~~~~iP~~~ 588 (615)
T 1vk3_A 539 -----------------REKE--------LWRAIRKLSEEGAFILSSSQLLTR----THVETF-REYGLKIEVKLPEVRP 588 (615)
T ss_dssp -----------------HHHH--------HHHHHHHHHHTTCEEECCTTSSCH----HHHHHH-HHTTCEEEECCCCCCS
T ss_pred -----------------HHHH--------HHHHHHHHHhCCCeEEEEEECCCC----HHHHHh-CCCcEEEEeCCCCCCC
Confidence 0111 112233456678 89999999987 899997 9999999999999863
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcCC-CCeEEEEEEE
Q 016548 325 VFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGG-YEAYHIGEVV 379 (387)
Q Consensus 325 ~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~ 379 (387)
.+ .+.++|+.++. .. ++++.||+|+
T Consensus 589 ----------~~----------d~~llfse~~~----------~~~v~~~~IG~v~ 614 (615)
T 1vk3_A 589 ----------AH----------QMVLVFSERTP----------VVDVPVKEIGTLS 614 (615)
T ss_dssp ----------SC----------EEEEEEESSCC----------CCSSCEEEEEEEE
T ss_pred ----------Cc----------ccEEEEecccc----------cCCCCeeEeeeEe
Confidence 12 23577776432 12 7899999996
No 24
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.88 E-value=4.9e-22 Score=222.44 Aligned_cols=242 Identities=18% Similarity=0.131 Sum_probs=167.2
Q ss_pred ChHHHHHHHHHHHHHHHhhh--CChHHHHHHhhcCCCC------CH---------------HHHHHHHHHHHHHHHHcCC
Q 016548 124 IHDTIGIDLVAMSVNDIVTS--GAKPLFFLDYFATSHL------EV---------------DLAEKVIKGIVDGCQQSDC 180 (387)
Q Consensus 124 ~~~~iG~~aVa~nvnDIaa~--GA~Pl~~ld~l~~~~~------~~---------------e~~~~i~~Gi~~ac~~~g~ 180 (387)
.|+..+.-.|-..++|+.+| ||+|++.++.+.++++ ++ +.+.+=+.|+++.++++|+
T Consensus 311 ePf~GAaTGvGG~iRD~~~~G~GarPiA~~~~~~~~~lr~~~~~~p~e~~~g~p~~~~~~~~i~~~g~~G~s~ygN~~Gv 390 (1303)
T 3ugj_A 311 SPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGR 390 (1303)
T ss_dssp CHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEESCCCCTTCCCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCcccceeEEEEEchhccCCCCEeeeeeeeeeeccccCCCCCCccccccCCchhccChhhhhhcccchHHHHHHhcCC
Confidence 36789999999999999995 9999999975432211 11 2333334499999999999
Q ss_pred eEEeecceee------------CCcccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeC----CCchhhhHHHHHHH
Q 016548 181 VLLGGETAEM------------PDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLP----SSGVHSNGFSLVRR 244 (387)
Q Consensus 181 ~lvGGeT~~~------------p~~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~g----s~G~~~~G~sl~~~ 244 (387)
|+|+|+|... +++ .+.+ +..+++|.++++. +.+..+++||.|+++| ..|.|+..++..+.
T Consensus 391 p~V~G~~~~~~~~~~~~~~~~~~g~--~kp~-v~~~gvG~i~~~~-~~~~~~~~Gd~Iiv~Gg~tgr~G~gGaa~sS~~~ 466 (1303)
T 3ugj_A 391 PALTGYFRTYEEKVNSHNGEELRGY--HKPI-MLAGGIGNIRADH-VQKGEIVVGAKLIVLGGPAMNIGLGGGAASSMAS 466 (1303)
T ss_dssp CEEEEEEEECEEEEEETTEEEEEEC--SSCE-EEEEEEEEECGGG-SSCCCCCTTCEEEEEECCBCTTCC----------
T ss_pred CCcceEEEEEeeecccccccccccc--CCce-eEEEEEEEEehHH-cccccCCCCCEEEEECCCCCcccCcHHHHhHHhh
Confidence 9999999422 222 1234 4556899998765 4455699999999998 69999876654332
Q ss_pred HHhhcCCcccCCCCCc--hhHHHHHhcccchhhHHHHHHHHHhCCccEEecCCCchHhchHhhhcC-CCceEEEEcCCCC
Q 016548 245 VLAQSGLSLKDQLPSE--NTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFP-KGLGAVIYEDSWK 321 (387)
Q Consensus 245 i~~~~~~~~~~~~p~~--~~~~~e~ll~P~~~~v~~~~~l~~~~~v~a~~DIT~GGL~~~L~~~~~-s~~g~~Id~~~ip 321 (387)
.....++ .++.. .....|.++. ..++.++++.+.+.|++|+|+|.|||..+|.||+. +++|++||++++|
T Consensus 467 --~~~~~~~--~~~~VQ~g~p~~ek~~~---~li~~~lel~~~~~V~a~~D~t~GGL~~~l~Ema~~sgvG~~Idld~vP 539 (1303)
T 3ugj_A 467 --GQSDADL--DFASVQRDNPEMERRCQ---EVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDIL 539 (1303)
T ss_dssp -----------CGGGCCCCCHHHHHHHH---HHHHHHHTTGGGCCEEEEEECCTTTHHHHHHHHHHHTTCEEEEEGGGSC
T ss_pred --ccccccc--CchhhccCCHHHHHHHH---HHHHHHHHHhccCCeeEEEECCCcHHHHHHHHHHHHcCCeEEEEhhhCC
Confidence 1100001 11110 1122232210 13445555556688999999999999999999996 9999999999999
Q ss_pred CcHHHHHHHHhCCCCHHHHHHhcCCCe-eEEEEEeccCHHHHHHhhcCC-CCeEEEEEEEcCCceEE
Q 016548 322 VPAVFKWIQQAGRIEDSEMRRTFNMGI-GMVLVVSKETSHTILEGGRGG-YEAYHIGEVVNGEGVSY 386 (387)
Q Consensus 322 i~~~~~~i~~~~~i~~~e~~~~fn~G~-gll~~v~~e~~~~v~~~l~~~-~~~~vIG~V~~g~gv~~ 386 (387)
+.+. +++|.|++ .++.. .|+++|+|++++++++.+++. .++++||+|+++..+++
T Consensus 540 ~~~~--------gl~p~ei~--~sesqerml~~V~pe~~~~~~~~~~~~g~~a~vIG~Vt~~~~v~l 596 (1303)
T 3ugj_A 540 SDEP--------GMSPLEIW--CNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSL 596 (1303)
T ss_dssp BSCT--------TCCHHHHH--HCCCSSEEEEEECGGGHHHHHHHHHHHTCCEEEEEEEESSCEEEE
T ss_pred CCcc--------CCCHHHHH--hCcCcceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEecCCeEEE
Confidence 8753 78999884 34433 399999999999999999877 99999999998777654
No 25
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=70.07 E-value=0.67 Score=33.44 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=41.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCCCCCCCCchh
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSGSSTSEGLTY 67 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 67 (387)
+....++||++||.++..+.+ .|+++ ..|..+.+...+.++..+.+....+......++|
T Consensus 13 ~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~ 76 (76)
T 1adr_A 13 RRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQTNVAY 76 (76)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTCSCSSTTTC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcCCCCCCCCCC
Confidence 455679999999999976644 38887 5577887777777777766655544444444443
No 26
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=67.31 E-value=1.4 Score=33.93 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=37.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccCccchhhhhcccccccccccC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCKLPFLSMASRRVSVNSCVLSM 54 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (387)
+....++||++||.++..+.+ .|+++..+.++.+...+.++.++.+.
T Consensus 32 lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 32 LLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHH
Confidence 456789999999999977754 38888768999999988888876554
No 27
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=53.57 E-value=4.4 Score=28.97 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=38.0
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSG 56 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 56 (387)
+....++||++||.++..+.+ .|+++ .-|.++.+...+.++.++.+...
T Consensus 16 ~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 16 VLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELI 68 (73)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGB
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 456789999999999977644 38888 57888888888888877665543
No 28
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=49.09 E-value=4.8 Score=29.45 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=34.0
Q ss_pred hhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 9 ATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
....++||.+||..+..+.+ .|+++ +-|..+.+...+.++.++.+
T Consensus 21 r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~ 69 (80)
T 3kz3_A 21 KNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVE 69 (80)
T ss_dssp HHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGG
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 44578999999999977644 38888 55778888888877776544
No 29
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=47.96 E-value=4.8 Score=28.36 Aligned_cols=46 Identities=9% Similarity=-0.073 Sum_probs=33.5
Q ss_pred hhhccchhhHHhhhhcC--CCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLN--PTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~--~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....++||++||.++. .+.+ .|+++ ..|.++.+...+.++.++.+
T Consensus 16 ~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~ 67 (71)
T 2ewt_A 16 IRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQ 67 (71)
T ss_dssp HHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 44567999999999997 6644 37887 56788877777777665443
No 30
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=46.64 E-value=4.5 Score=29.57 Aligned_cols=45 Identities=11% Similarity=-0.097 Sum_probs=33.9
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhcccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVL 52 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 52 (387)
+....+|||++||..+..+.+ .|+++ +.|.++.+...+.++.++.
T Consensus 19 ~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~ 67 (82)
T 3s8q_A 19 IRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSD 67 (82)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCH
Confidence 445689999999999976644 38888 5788888888777776543
No 31
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=45.88 E-value=4.4 Score=29.70 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=36.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc--CccchhhhhcccccccccccC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC--KLPFLSMASRRVSVNSCVLSM 54 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~ 54 (387)
++...+|||++||.++..+.+ .|+++ ..|.++.+...+.++.++.+.
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 69 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 345689999999999977644 38888 678888888888887765443
No 32
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=45.11 E-value=4.3 Score=31.49 Aligned_cols=45 Identities=11% Similarity=-0.097 Sum_probs=34.3
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhcccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVL 52 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 52 (387)
++...+|||++||.++..+.+ .++++ +.|.++.+...+.++.++.
T Consensus 36 ~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~ 84 (99)
T 3g5g_A 36 IRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSD 84 (99)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCH
Confidence 456689999999999977644 37888 5788888888877776543
No 33
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=43.93 E-value=5.6 Score=30.34 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=40.0
Q ss_pred hhhccchhhHHhhhhcCCCc-------cccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTN-------NVLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
+....||||++||..+..+. +.|+++ +-|.++.+...+.++.++.+.....
T Consensus 9 ~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l~~~ 67 (98)
T 3lfp_A 9 ARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTP 67 (98)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGGGCC
T ss_pred HHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCC
Confidence 45668999999999996663 348888 7799999999999988876665443
No 34
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=43.48 E-value=5.4 Score=31.58 Aligned_cols=51 Identities=14% Similarity=-0.005 Sum_probs=40.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
++...+|||++||..+..+.+ .|+++ +.|.++.+...+.++.++.+....+
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~ 85 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLG 85 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEECC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCC
Confidence 556789999999999977644 38888 5699999999999998876654433
No 35
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=43.27 E-value=13 Score=28.06 Aligned_cols=51 Identities=6% Similarity=-0.093 Sum_probs=37.9
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccc--ccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSV--NSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 58 (387)
+....++||++||..+..+.+ .|+++ +.|.++.+...+.+ ..++.+....+
T Consensus 12 ~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~~~v~~~~l~~~ 68 (99)
T 2l49_A 12 MRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTN 68 (99)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTTSS
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCHHHHHcC
Confidence 455679999999999977644 38888 66888888888888 66655555444
No 36
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=42.41 E-value=5.2 Score=30.30 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=37.6
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
+....++||++||.++..+.+ .|+++ +.|.++.+...+.++.++.+....+
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~~ 71 (94)
T 2kpj_A 17 YIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIED 71 (94)
T ss_dssp HHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 455679999999999977644 38888 5678888888887777766554444
No 37
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=42.25 E-value=7.9 Score=28.93 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=39.5
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
+....+|||++||..+..+.+ .|+++ ..|.++.+...+.++.++.+....+
T Consensus 21 ~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l~~g 75 (91)
T 1x57_A 21 GRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIG 75 (91)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHccC
Confidence 455679999999999977644 38888 5588888888888888877775444
No 38
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=41.75 E-value=5.4 Score=28.87 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=33.3
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....++||++||.++..+.+ .|+++ ..|.++.+...+.++.++.+
T Consensus 10 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~ 59 (77)
T 2k9q_A 10 ERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLN 59 (77)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 455679999999999977644 37777 45777777777777665443
No 39
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=41.52 E-value=11 Score=29.56 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=37.3
Q ss_pred ccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCC
Q 016548 11 NTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSG 56 (387)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 56 (387)
..+|||++||..+..+.+ .|+++ ..|.++.+...+.++.++.++..
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~e~~ 96 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGAN 96 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSSS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHhhhc
Confidence 678999999999977644 38888 67888989999999888777644
No 40
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=41.03 E-value=7.3 Score=30.60 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=29.2
Q ss_pred hhhccchhhHHhhhhcCCCccc---ccccCccchhhhhcccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNNV---LLNCKLPFLSMASRRVSVNSC 50 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 50 (387)
++...||||++||.++..+.+. |++++ +.++.....+.++..
T Consensus 44 ~R~~~glTQ~eLA~~~gvs~~~is~~E~G~-~~~~~l~~i~~aL~~ 88 (101)
T 4ghj_A 44 ARLNRDLTQSEVAEIAGIARKTVLNAEKGK-VQLDIMIAILMALDL 88 (101)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHTTC-CBHHHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHcCCCHHHHHHHHCCC-CCHHHHHHHHHHcCC
Confidence 4667899999999999777553 78774 444555555555554
No 41
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=40.57 E-value=5.7 Score=29.01 Aligned_cols=45 Identities=9% Similarity=-0.081 Sum_probs=32.6
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhcccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVL 52 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 52 (387)
+....+|||++||..+..+.+ .|+++ +.|.++.+...+.++.++.
T Consensus 22 ~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~ 70 (83)
T 3f6w_A 22 ARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDP 70 (83)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCH
Confidence 445689999999999976644 37887 4677777777776666543
No 42
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=40.50 E-value=5.5 Score=31.42 Aligned_cols=49 Identities=8% Similarity=-0.120 Sum_probs=37.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSG 56 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 56 (387)
+....+|||++||.++..+.+ .|+++ +.|.++.+...+.++.++.+...
T Consensus 29 ~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l~ 81 (114)
T 3vk0_A 29 FRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLL 81 (114)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 456689999999999977644 38888 46888888888888877555443
No 43
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=40.24 E-value=8.5 Score=28.65 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=31.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhcccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSC 50 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 50 (387)
+....||||++||..+..+.+ .|+++ +.|.++.+...+.++..
T Consensus 22 ~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 68 (86)
T 3eus_A 22 ARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG 68 (86)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCC
Confidence 345689999999999976644 38888 56788777777666653
No 44
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=40.08 E-value=8.1 Score=27.21 Aligned_cols=46 Identities=9% Similarity=-0.102 Sum_probs=32.7
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....|+||++||.++..+.+ .|+++ +.|.++.+...+.++..+.+
T Consensus 21 ~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~ 70 (74)
T 1y7y_A 21 LRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPR 70 (74)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGG
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 345578999999999876643 37787 56777777777776665443
No 45
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=39.54 E-value=8.1 Score=28.52 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=35.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccCc--cchhhhhcccccccccccC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCKL--PFLSMASRRVSVNSCVLSM 54 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~ 54 (387)
+....++||++||..+..+.+ .|+++.. |.++.+...+.++..+.+.
T Consensus 26 ~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~~ 77 (83)
T 2a6c_A 26 HLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEI 77 (83)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeEE
Confidence 445679999999999877644 3888853 7888888888777765543
No 46
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=37.44 E-value=9.2 Score=27.56 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=25.3
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhh
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMA 41 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ 41 (387)
++...+|||++||..+..+.+ .|+++ +.|..+..
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~ 56 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI 56 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHH
Confidence 556789999999999966644 48888 56666554
No 47
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.97 E-value=9 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=34.4
Q ss_pred hhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCC
Q 016548 9 ATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMS 55 (387)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 55 (387)
....++||++||..+..+.+ .|+++ .-|.++.+...+.++.++.+..
T Consensus 26 R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l 76 (92)
T 1lmb_3 26 KNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEF 76 (92)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHH
Confidence 35679999999999877643 38888 5678888887777777654443
No 48
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=35.91 E-value=9.8 Score=26.97 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=34.3
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMS 55 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 55 (387)
+....++||++||..+..+.+ .|+++ ..|..+.+...+..+..+.+..
T Consensus 18 ~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 18 VLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 445679999999999976643 38887 5577777777777776655443
No 49
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=34.11 E-value=7.5 Score=30.41 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=40.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSGS 59 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (387)
+..-.|+||++||.++..+.+ .|+++ +.|.++.+...+.++.++.+......
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~~~ 72 (114)
T 3op9_A 17 LKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYV 72 (114)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhcCC
Confidence 456689999999999977644 38888 67999999999988888777655543
No 50
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.98 E-value=9.5 Score=27.13 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=30.9
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCV 51 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~ 51 (387)
+....++||++||..+..+.+ .|+++ ..|.++.+...+.++..+
T Consensus 18 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~ 65 (77)
T 2b5a_A 18 IRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIP 65 (77)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCC
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 345678999999999876643 37777 467777776666666543
No 51
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.66 E-value=8.5 Score=30.75 Aligned_cols=51 Identities=14% Similarity=0.002 Sum_probs=39.6
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
++...||||++||..+..+.+ .|+++ +.|.++.+...+.++.++.+.....
T Consensus 20 ~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~ 74 (126)
T 3ivp_A 20 ARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLP 74 (126)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSC
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCC
Confidence 456789999999999977644 38888 5799999999999888876654443
No 52
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=33.38 E-value=4.2 Score=32.86 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=31.4
Q ss_pred cchhhHHhhhhcCCCc---cccccc-------Cccchhhhhccccccccccc
Q 016548 12 TELTSRFFASKLNPTN---NVLLNC-------KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 12 ~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 53 (387)
.||||++||.++..+. ..|+++ .-|.++.+...+..+..+.+
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l~v~~~ 55 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCR 55 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCEEEEEC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHHccccc
Confidence 7899999999984443 348887 34788888888877777654
No 53
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=33.34 E-value=8.5 Score=30.25 Aligned_cols=46 Identities=11% Similarity=-0.006 Sum_probs=34.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....||||++||..+..+.+ .|+++ +.|.++.+...+.++.++.+
T Consensus 36 ~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~ 85 (117)
T 3f52_A 36 FRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVA 85 (117)
T ss_dssp HHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHH
Confidence 345679999999999977644 38888 45888888888887776543
No 54
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=33.29 E-value=9.6 Score=26.04 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=30.5
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCV 51 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~ 51 (387)
+....++||+++|..+..+.+ .|+++ ..|..+.+...+.++..+
T Consensus 9 ~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 56 (66)
T 2xi8_A 9 IREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTP 56 (66)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 455679999999999876643 37777 456666666666655543
No 55
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=32.54 E-value=10 Score=26.13 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=29.5
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhcccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSC 50 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 50 (387)
+....++||++||.++..+.+ .|+++ ..|..+.+...+.++..
T Consensus 13 ~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~ 59 (68)
T 2r1j_L 13 RRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQC 59 (68)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTS
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 445678999999999876643 37777 55666666666555544
No 56
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=32.44 E-value=8.4 Score=28.29 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=37.5
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
+....|+||++||..+..+.+ .|+++ +.|.++.+...+.++..+.+....+
T Consensus 20 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~~~ 74 (88)
T 2wiu_B 20 VRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK 74 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC--
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHhccC
Confidence 445678999999999976644 37887 6688888888888888776665533
No 57
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=31.98 E-value=8.9 Score=30.09 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=37.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMS 55 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 55 (387)
+....+|||.+||..+..+.+ .++++ +-|.++.+...+.++.++.+.-
T Consensus 22 lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~~l 73 (104)
T 3trb_A 22 LGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFW 73 (104)
T ss_dssp HHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 455679999999999977644 48888 5688999999888888755443
No 58
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=30.54 E-value=9.3 Score=29.21 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=27.5
Q ss_pred hhhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccc
Q 016548 7 SIATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNS 49 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 49 (387)
.++...+|||++||..+..+.+ .|+++ +.|... +...+.++.
T Consensus 37 ~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l~ 82 (99)
T 2ppx_A 37 IIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKIIA 82 (99)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHHC
Confidence 3556689999999999976644 38887 455554 344444433
No 59
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.54 E-value=11 Score=26.92 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=35.7
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccC--ccchhhhhcccccccccccCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCK--LPFLSMASRRVSVNSCVLSMSG 56 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 56 (387)
+....++||++||.++..+.+ .|+++. .|.++.+...+.++..+.+...
T Consensus 15 ~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l~ 68 (78)
T 3b7h_A 15 LITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFF 68 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 345678999999999976643 388884 5888888888887776555443
No 60
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=28.89 E-value=12 Score=34.60 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSGS 59 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (387)
+....||||++||.++..+.+ .|+++ +.|.++.+.+.+.++.++.+.-..+.
T Consensus 38 ~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~ 93 (311)
T 4ich_A 38 LIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGR 93 (311)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCC
Confidence 456789999999999866644 48888 67889999999998888776665554
No 61
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=28.45 E-value=14 Score=31.61 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=39.2
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-CccchhhhhcccccccccccCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLSMSGSG 58 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (387)
++...+|||++||.++..+.+ .|+++ ..|.++.+...+.++.++.+.....
T Consensus 19 ~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~ 73 (192)
T 1y9q_A 19 LRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFAN 73 (192)
T ss_dssp HHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHcCC
Confidence 455679999999999977644 38888 6788998888888888766655543
No 62
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=26.71 E-value=16 Score=34.67 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=41.0
Q ss_pred HHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEe
Q 016548 136 SVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLG 184 (387)
Q Consensus 136 nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvG 184 (387)
++.|.+.+||.-..++..+.+++..+...-+-+.-+.+.|+++|+|++.
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ 181 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIML 181 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 8899999999988776667788777777777788899999999999863
No 63
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=25.00 E-value=18 Score=29.12 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=35.8
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccC--ccchhhhhcccccccccccCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCK--LPFLSMASRRVSVNSCVLSMS 55 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 55 (387)
+....+|||++||..+..+.+ .|+++. -|.++.+...+.++..+.+..
T Consensus 48 ~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~~l 100 (120)
T 2o38_A 48 VIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIV 100 (120)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcEEe
Confidence 445679999999999976644 388884 578888888888777665543
No 64
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=24.55 E-value=13 Score=30.29 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=30.4
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccCc-cchhh------hhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCKL-PFLSM------ASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~------~~~~~~~~~~~~~ 53 (387)
.+...||||+++|.++..+.+ .++++++ |...+ +...+.++..+.+
T Consensus 11 ~R~~~gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 11 RRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHH
Confidence 456789999999999977754 3778754 33322 4555555555443
No 65
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=24.43 E-value=28 Score=29.76 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=39.9
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccC--ccchhhhhcccccccccccCCCCCC
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCK--LPFLSMASRRVSVNSCVLSMSGSGS 59 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (387)
++...+|||++||.++..+.+ .|+++. -|.++.+...+..+.++.+....+.
T Consensus 18 ~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l~~~~ 74 (198)
T 2bnm_A 18 RREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPA 74 (198)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHEEccC
Confidence 455679999999999977644 388884 5899999888888887776665543
No 66
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=24.27 E-value=14 Score=30.52 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=35.0
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....||||+++|..+..+.+ .|+++ +-|.++.+...+.++..+.+
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~ 125 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPL 125 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHH
Confidence 566789999999999976644 37887 56888888888777766544
No 67
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=23.59 E-value=15 Score=35.20 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhCChHHHHHHhhcCCCCCH--HHHHHHHHHHHHHHHHcCCeEE
Q 016548 133 VAMSVNDIVTSGAKPLFFLDYFATSHLEV--DLAEKVIKGIVDGCQQSDCVLL 183 (387)
Q Consensus 133 Va~nvnDIaa~GA~Pl~~ld~l~~~~~~~--e~~~~i~~Gi~~ac~~~g~~lv 183 (387)
..-++.++..+||.-+-++.|+.+.+.++ ....+.+.-+.+.|+++|+|++
T Consensus 112 ~~~sve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPll 164 (332)
T 3iv3_A 112 VDWSIKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFF 164 (332)
T ss_dssp TTCCHHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred cccCHHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceE
Confidence 44578999999999988888877654432 3566789999999999999985
No 68
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=23.44 E-value=17 Score=28.17 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=34.6
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....|+||++||..+..+.+ .|+++ +.|.++.+...+.++.++.+
T Consensus 19 ~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 19 YLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp TTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 456679999999999976644 38888 55888888887777776544
No 69
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.91 E-value=17 Score=27.75 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=33.7
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhhcccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMASRRVSVNSCVL 52 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 52 (387)
+....++||++||..+..+.+ .|+++ +.|.++.+...+.++.++.
T Consensus 26 ~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~ 74 (104)
T 3cec_A 26 ILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGP 74 (104)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCH
Confidence 345678999999999976644 38887 5688888888777777643
No 70
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.67 E-value=1.5e+02 Score=23.68 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHcCCeEEeecceeeCC-cccCCceeEEEEEEEEEcCCCccCCCCCCCCCEEEEeCCCc
Q 016548 176 QQSDCVLLGGETAEMPD-FYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSG 233 (387)
Q Consensus 176 ~~~g~~lvGGeT~~~p~-~~~~~~~~lsgtavG~v~~~~~l~~~~a~~GD~Ii~~gs~G 233 (387)
..+|..|.||....-.. +-+...+.. +..|..|.++.+-.+.+.++||.|+-+...-
T Consensus 39 ~g~Gf~i~g~~~~~~~~~~~~~~~~~~-gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~ 96 (132)
T 3l4f_D 39 EGFGFVLRGAKAQTPIEEFTPTPAFPA-LQYLESVDEGGVAWRAGLRMGDFLIEVNGQN 96 (132)
T ss_dssp SCCCEEEEEECCSSCCSCCCCCTTSCC-SEEEEEECTTSGGGGGTCCTTCEEEEESSSB
T ss_pred CcEeEEEeccCCCCccccccccccCCC-CEEEEEECCCCHHHHcCCCCCCEEEEECCEE
Confidence 35799999986531100 000011111 2345556655565667899999999986543
No 71
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=21.52 E-value=21 Score=28.29 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=20.7
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccCc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCKL 35 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 35 (387)
++...||||++||.++..+.+ .++++.+
T Consensus 15 ~R~~~glSq~eLA~~~gis~~~is~iE~G~~ 45 (112)
T 2wus_R 15 KREERRITLLDASLFTNINPSKLKRIEEGDL 45 (112)
T ss_dssp HHHTTTCCHHHHHHHSSCCHHHHHHHHHTCC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCC
Confidence 456789999999999876644 3666643
No 72
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.86 E-value=21 Score=25.62 Aligned_cols=35 Identities=9% Similarity=-0.065 Sum_probs=24.1
Q ss_pred hhhccchhhHHhhhhcCCCcc---ccccc-Cccchhhhh
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNC-KLPFLSMAS 42 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 42 (387)
+....|+||++||..+..+.+ .|+++ +-|.++.+.
T Consensus 18 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 56 (84)
T 2ef8_A 18 LRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELF 56 (84)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 455679999999999876643 37777 446654433
No 73
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.81 E-value=22 Score=24.42 Aligned_cols=44 Identities=18% Similarity=0.012 Sum_probs=27.6
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccCc-cchhhhhcccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCKL-PFLSMASRRVSVNSCVL 52 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 52 (387)
+....++||++||..+..+.+ .|+++.. |... +...+.++..+.
T Consensus 9 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~ 56 (69)
T 1r69_A 9 KRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSV 56 (69)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCH
Confidence 345678999999999876644 3777733 4333 555555555433
No 74
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.80 E-value=20 Score=24.78 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=28.0
Q ss_pred hhhccchhhHHhhhhcCCCcc---cccccCccchhhhhccccccccccc
Q 016548 8 IATNTELTSRFFASKLNPTNN---VLLNCKLPFLSMASRRVSVNSCVLS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (387)
+....++||++||..+..+.+ .|+++..+....+...+..+..+.+
T Consensus 11 ~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l~~~~~ 59 (71)
T 1zug_A 11 RRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPV 59 (71)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHTTSCHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHHCCCHH
Confidence 445678999999999876643 3777743322334555555554433
Done!