Query 016551
Match_columns 387
No_of_seqs 322 out of 1218
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.1E-36 1.1E-40 241.2 4.6 76 198-273 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6.2E-36 2.1E-40 240.5 3.6 75 198-272 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1.7E-30 6E-35 208.0 4.5 65 38-102 10-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 2E-30 6.8E-35 208.5 4.0 65 38-102 13-78 (78)
5 2rpr_A Flywch-type zinc finger 72.5 1.7 5.9E-05 34.1 2.1 51 209-272 22-75 (87)
6 2rpr_A Flywch-type zinc finger 61.8 2.9 9.8E-05 32.8 1.4 49 41-101 23-74 (87)
7 1cz6_A Protein (androctonin); 16.8 35 0.0012 21.7 0.4 8 233-240 16-23 (26)
8 1odh_A MGCM1; transcription fa 14.4 88 0.003 28.3 2.5 11 93-103 149-159 (174)
9 1odh_A MGCM1; transcription fa 11.0 1.4E+02 0.0047 27.1 2.6 39 234-275 122-161 (174)
10 1qxn_A SUD, sulfide dehydrogen 7.5 1.4E+02 0.0047 24.4 1.2 24 207-230 109-133 (137)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.1e-36 Score=241.19 Aligned_cols=76 Identities=67% Similarity=1.280 Sum_probs=73.3
Q ss_pred cceeeeccCCcccCCCCchhhhccccccCCCCCCcccccccCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCCC
Q 016551 198 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 273 (387)
Q Consensus 198 ~rvvv~t~s~~d~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~~ 273 (387)
.||+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=6.2e-36 Score=240.47 Aligned_cols=75 Identities=79% Similarity=1.297 Sum_probs=69.7
Q ss_pred cceeeeccCCcccCCCCchhhhccccccCCCCCCcccccccCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 016551 198 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 272 (387)
Q Consensus 198 ~rvvv~t~s~~d~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~ 272 (387)
.+|+|+|.+++++++|||+|||||||.|||+++||+|||||.++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=1.7e-30 Score=207.96 Aligned_cols=65 Identities=52% Similarity=0.996 Sum_probs=61.0
Q ss_pred ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccceeecc-CCceeeeeecccCCCCCCC
Q 016551 38 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 102 (387)
Q Consensus 38 ~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~ 102 (387)
+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4567899999999999999999999999999999999999999986 6789999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=2e-30 Score=208.51 Aligned_cols=65 Identities=52% Similarity=0.981 Sum_probs=60.4
Q ss_pred ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccceeecc-CCceeeeeecccCCCCCCC
Q 016551 38 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 102 (387)
Q Consensus 38 ~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~ 102 (387)
+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 4567899999999999999999999999999999999999999975 7789999999999999874
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=72.47 E-value=1.7 Score=34.11 Aligned_cols=51 Identities=18% Similarity=0.404 Sum_probs=32.8
Q ss_pred ccCCCCchhhhccccccCCCCCCcccccccC---CCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 016551 209 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 272 (387)
Q Consensus 209 d~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~---~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~ 272 (387)
-|+-|||.-.+--+ ...+.|.+|+. .+|.|+=.... + .+ .-.+.|||++..
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~~ 75 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPDL 75 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCCH
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCch
Confidence 35568998775321 12368999984 58999855432 1 13 356899997643
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=61.82 E-value=2.9 Score=32.81 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=30.9
Q ss_pred cCCCCccccccCcccCCCCCCCCCcccCCC---CCCccccceeeccCCceeeeeecccCCCCCC
Q 016551 41 RSEDGYNWRKYGQKQVKGSENPRSYFKCTF---PDCPMKKKVERSLDGQITEIVYKGSHNHPKP 101 (387)
Q Consensus 41 ~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~---~~C~akK~Vqr~~dg~~~~i~Y~G~HnH~~p 101 (387)
..-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ ++-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 4578887765321 12357999986 47999744332 22 345788999753
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=16.83 E-value=35 Score=21.70 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.5
Q ss_pred ccccccCC
Q 016551 233 SYYKCTTT 240 (387)
Q Consensus 233 sYYrCt~~ 240 (387)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999964
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=14.40 E-value=88 Score=28.29 Aligned_cols=11 Identities=55% Similarity=1.316 Sum_probs=10.1
Q ss_pred cccCCCCCCCC
Q 016551 93 KGSHNHPKPTS 103 (387)
Q Consensus 93 ~G~HnH~~p~~ 103 (387)
+|.|.||+|..
T Consensus 149 KG~HDHpRPe~ 159 (174)
T 1odh_A 149 KGEHDHPRPET 159 (174)
T ss_dssp ECCCCSCCCCC
T ss_pred ccccCCCCCCC
Confidence 69999999987
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=11.00 E-value=1.4e+02 Score=27.07 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=24.3
Q ss_pred ccccc-CCCCCchhhhhhhcCCCCEEEEEEecccCCCCCCCCC
Q 016551 234 YYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARG 275 (387)
Q Consensus 234 YYrCt-~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~~r~ 275 (387)
-+.|. +-|=||+ +..| +|...+...-+|.|+|+.|.+..
T Consensus 122 ~~~Crgh~GyPVT-hFWr--h~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWR--HDGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCCE-EEEE--ECSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcce-EEEE--EcCCEEEEecccccCCCCCCCcc
Confidence 34454 3355553 4444 34455556789999999998753
No 10
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=7.45 E-value=1.4e+02 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.3
Q ss_pred CcccCCCCch-hhhccccccCCCCC
Q 016551 207 DIDILDDGYR-WRKYGQKVVKGNPN 230 (387)
Q Consensus 207 ~~d~~dDGy~-WRKYGQK~ikgn~~ 230 (387)
++.+++.|+. |++.|-.+++++++
T Consensus 109 ~v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 109 TIYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp CEEEESSCHHHHHHTTCCEECCCCC
T ss_pred ceEEEcCcHHHHHHCCCCccccccc
Confidence 3456788985 99999999998875
Done!