BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016552
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
           Provides The Binding Site For Lasp-1 That Is Necessary
           For Pseudopodia Extension
          Length = 318

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 49/245 (20%)

Query: 63  LHNVCHSWRRLIYSPSFPPFLSL-------YALFSPKSNSSSTPIHLFTFDPVSSTWDXX 115
           L NV   W  L   PS      L       Y +      + ++   +  +DPV++ W   
Sbjct: 83  LDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142

Query: 116 XXXXXXXXXXXXXXXXSFLSRNLPVQL-----VSLSGKLILLAATTHNFNPALTRPLIFD 170
                               +NLP+++     +S +G +  L   T +      R  I++
Sbjct: 143 --------------------KNLPIKVYGHNVISHNGMIYCLGGKTDD-KKCTNRVFIYN 181

Query: 171 PICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRW 230
           P    W     + TPR        +G + +A G+       ++ SVE +DL    K ++W
Sbjct: 182 PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVT---EDGLSASVEAFDL----KTNKW 234

Query: 231 EKTGELKDGRFSREAIDAVG---WKGKLCLVNVKGAEGAVYDVVANTW---DDMRE--GM 282
           E   E    R S   +   G     G   ++ ++  E A  + V + W   DD +E  GM
Sbjct: 235 EVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTE-VNDIWKYEDDKKEWAGM 293

Query: 283 VRGWR 287
           ++  R
Sbjct: 294 LKEIR 298


>pdb|4EVD|A Chain A, Crystal Structure Hp-Nap From Strain Ys29 Cadmium Loaded
           (Cocrystallization 50mm)
 pdb|4EVE|A Chain A, Crystal Structure Hp-Nap From Strain Ys29 In Apo Form
          Length = 164

 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 257 LVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV-LYGIDENSCTLSR----Y 311
             NV  A   +Y+  A+ +DD+ E +V+    P+  + E + L  + E + T       +
Sbjct: 53  FFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIF 112

Query: 312 DEVMDDWKEVVKS 324
            E+++D+K + K 
Sbjct: 113 KEILEDYKHLEKE 125


>pdb|1YIR|A Chain A, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase
 pdb|1YIR|B Chain B, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase
 pdb|1YIR|C Chain C, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase
 pdb|1YIR|D Chain D, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase
          Length = 408

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 170 DPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDV 212
           DP+ +T  F   L  PR        +G + V+ GIG+ F+ D+
Sbjct: 310 DPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDL 352


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,865,450
Number of Sequences: 62578
Number of extensions: 373414
Number of successful extensions: 936
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 5
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)