Query 016552
Match_columns 387
No_of_seqs 251 out of 2618
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 1.8E-37 3.9E-42 308.0 28.1 240 101-371 273-544 (557)
2 KOG4441 Proteins containing BT 100.0 8.5E-37 1.8E-41 302.0 29.5 293 42-366 227-552 (571)
3 KOG4441 Proteins containing BT 100.0 1.3E-32 2.9E-37 272.2 25.8 224 84-335 334-567 (571)
4 PHA03098 kelch-like protein; P 100.0 3.2E-32 6.9E-37 272.0 28.3 233 102-366 266-517 (534)
5 PLN02153 epithiospecifier prot 100.0 1.6E-31 3.6E-36 251.8 31.2 256 84-356 34-339 (341)
6 PLN02153 epithiospecifier prot 100.0 2.2E-31 4.7E-36 251.0 29.3 233 108-366 5-290 (341)
7 PHA02790 Kelch-like protein; P 100.0 2.5E-31 5.3E-36 260.5 26.9 202 142-366 267-476 (480)
8 PLN02193 nitrile-specifier pro 100.0 2.2E-30 4.8E-35 253.1 31.6 240 101-366 138-416 (470)
9 PHA02713 hypothetical protein; 100.0 1.8E-31 4E-36 265.0 23.6 214 84-323 305-542 (557)
10 TIGR03548 mutarot_permut cycli 100.0 3.6E-30 7.7E-35 241.0 27.0 219 101-346 40-312 (323)
11 PLN02193 nitrile-specifier pro 100.0 1.9E-29 4.2E-34 246.5 31.8 252 84-357 177-469 (470)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 7.8E-30 1.7E-34 241.2 28.1 236 84-347 19-331 (346)
13 PRK14131 N-acetylneuraminic ac 100.0 5.6E-29 1.2E-33 237.3 29.4 247 84-358 40-370 (376)
14 PHA02790 Kelch-like protein; P 100.0 2.6E-29 5.7E-34 246.2 26.3 201 84-322 273-478 (480)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 1.6E-28 3.4E-33 232.3 28.6 214 140-371 11-311 (346)
16 PHA03098 kelch-like protein; P 100.0 8.4E-29 1.8E-33 247.4 27.1 237 66-330 272-527 (534)
17 KOG4693 Uncharacterized conser 100.0 7.9E-29 1.7E-33 211.0 20.2 255 84-346 25-311 (392)
18 TIGR03548 mutarot_permut cycli 100.0 6.2E-28 1.3E-32 225.9 27.4 216 137-366 4-285 (323)
19 PRK14131 N-acetylneuraminic ac 100.0 1.8E-26 4E-31 220.0 28.0 227 111-370 18-332 (376)
20 KOG4693 Uncharacterized conser 99.9 4.4E-26 9.5E-31 194.3 18.9 220 137-369 14-285 (392)
21 KOG0379 Kelch repeat-containin 99.9 8.6E-21 1.9E-25 185.3 24.1 220 137-366 61-307 (482)
22 KOG0379 Kelch repeat-containin 99.9 3.6E-20 7.9E-25 180.9 25.4 223 84-325 72-312 (482)
23 KOG1230 Protein containing rep 99.8 2E-19 4.4E-24 162.3 16.3 204 102-322 100-348 (521)
24 KOG4152 Host cell transcriptio 99.8 8.9E-19 1.9E-23 161.8 18.8 272 69-359 18-366 (830)
25 KOG1230 Protein containing rep 99.8 2.9E-18 6.3E-23 154.9 18.9 210 147-365 79-345 (521)
26 KOG4152 Host cell transcriptio 99.7 3.3E-16 7.2E-21 145.0 17.0 217 137-366 33-308 (830)
27 COG3055 Uncharacterized protei 99.6 1.9E-14 4.2E-19 128.6 17.5 235 84-346 48-358 (381)
28 COG3055 Uncharacterized protei 99.6 2.2E-13 4.8E-18 121.9 18.5 212 141-371 41-339 (381)
29 PF13964 Kelch_6: Kelch motif 99.2 8.2E-11 1.8E-15 77.8 6.2 49 137-186 2-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.1 3.8E-10 8.3E-15 74.5 6.4 50 185-240 1-50 (50)
31 TIGR01640 F_box_assoc_1 F-box 99.1 1.1E-07 2.4E-12 84.5 24.3 185 164-357 14-229 (230)
32 PF01344 Kelch_1: Kelch motif; 98.9 2.9E-09 6.4E-14 69.3 4.7 47 185-237 1-47 (47)
33 PF01344 Kelch_1: Kelch motif; 98.8 3.6E-09 7.8E-14 68.8 3.7 46 137-183 2-47 (47)
34 PF13415 Kelch_3: Galactose ox 98.8 1.6E-08 3.4E-13 66.4 5.7 48 146-193 1-48 (49)
35 PF07646 Kelch_2: Kelch motif; 98.7 3.3E-08 7.2E-13 64.8 6.1 47 137-183 2-49 (49)
36 PLN03215 ascorbic acid mannose 98.7 2.8E-05 6.2E-10 72.6 27.7 140 223-376 189-365 (373)
37 TIGR01640 F_box_assoc_1 F-box 98.7 2.4E-06 5.2E-11 75.9 20.0 201 100-316 14-230 (230)
38 PF07646 Kelch_2: Kelch motif; 98.7 4.2E-08 9.1E-13 64.3 6.3 49 185-237 1-49 (49)
39 KOG2437 Muskelin [Signal trans 98.7 2.5E-08 5.4E-13 93.3 6.0 169 170-348 235-458 (723)
40 KOG2437 Muskelin [Signal trans 98.7 4.8E-08 1E-12 91.4 7.1 186 109-305 238-457 (723)
41 smart00612 Kelch Kelch domain. 98.6 4.7E-08 1E-12 63.3 4.5 47 148-196 1-47 (47)
42 KOG0281 Beta-TrCP (transducin 98.6 1.7E-06 3.8E-11 77.5 15.6 144 193-358 244-390 (499)
43 PF13418 Kelch_4: Galactose ox 98.5 1E-07 2.2E-12 62.5 3.9 47 137-184 2-49 (49)
44 PF13418 Kelch_4: Galactose ox 98.5 1.1E-07 2.5E-12 62.3 4.1 47 185-237 1-48 (49)
45 PF07893 DUF1668: Protein of u 98.5 0.00023 4.9E-09 67.0 26.6 142 140-290 69-225 (342)
46 PF12937 F-box-like: F-box-lik 98.5 9.6E-08 2.1E-12 62.0 2.4 37 43-79 1-40 (47)
47 smart00612 Kelch Kelch domain. 98.4 8.5E-07 1.8E-11 57.3 5.1 47 197-253 1-47 (47)
48 PF13415 Kelch_3: Galactose ox 98.4 1.3E-06 2.7E-11 57.2 5.9 48 195-250 1-48 (49)
49 smart00256 FBOX A Receptor for 98.2 1.3E-06 2.9E-11 54.7 2.9 34 46-79 1-37 (41)
50 PLN02772 guanylate kinase 98.1 2.8E-05 6.1E-10 73.0 10.3 81 137-223 25-109 (398)
51 PF00646 F-box: F-box domain; 98.0 1.3E-06 2.9E-11 56.9 0.7 37 43-79 3-42 (48)
52 PRK11138 outer membrane biogen 98.0 0.0045 9.8E-08 59.7 25.4 218 101-368 131-363 (394)
53 PF13854 Kelch_5: Kelch motif 98.0 1.8E-05 3.9E-10 49.8 5.4 41 182-223 1-41 (42)
54 PRK11138 outer membrane biogen 98.0 0.0059 1.3E-07 58.9 25.6 206 101-354 171-392 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.9 0.012 2.6E-07 52.1 24.1 185 142-358 32-232 (238)
56 PF08450 SGL: SMP-30/Gluconola 97.9 0.0027 5.9E-08 56.9 20.0 200 146-379 11-232 (246)
57 PLN02772 guanylate kinase 97.9 0.00011 2.3E-09 69.1 10.7 83 184-272 23-109 (398)
58 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00047 1E-08 61.0 12.6 150 166-326 48-210 (243)
59 TIGR03300 assembly_YfgL outer 97.8 0.017 3.6E-07 55.3 24.4 162 165-353 201-376 (377)
60 PF13360 PQQ_2: PQQ-like domai 97.7 0.02 4.3E-07 50.7 21.5 179 165-367 4-200 (238)
61 TIGR03300 assembly_YfgL outer 97.6 0.015 3.3E-07 55.6 21.7 193 141-366 60-267 (377)
62 PF13854 Kelch_5: Kelch motif 97.6 0.00013 2.9E-09 45.8 4.9 38 137-174 5-42 (42)
63 PF07250 Glyoxal_oxid_N: Glyox 97.6 0.001 2.3E-08 58.8 12.0 135 215-358 47-199 (243)
64 PF08450 SGL: SMP-30/Gluconola 97.5 0.009 1.9E-07 53.5 16.6 164 141-323 44-222 (246)
65 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.065 1.4E-06 48.8 20.3 171 165-358 12-189 (300)
66 PF07893 DUF1668: Protein of u 97.2 0.032 6.9E-07 52.6 17.9 117 194-327 75-222 (342)
67 TIGR03866 PQQ_ABC_repeats PQQ- 97.2 0.15 3.2E-06 46.3 25.0 182 148-357 44-238 (300)
68 cd00200 WD40 WD40 domain, foun 97.2 0.13 2.9E-06 45.4 21.2 184 147-358 21-209 (289)
69 PF05096 Glu_cyclase_2: Glutam 97.2 0.061 1.3E-06 48.0 17.6 146 194-358 54-205 (264)
70 PLN02919 haloacid dehalogenase 97.2 0.16 3.4E-06 55.2 24.3 200 140-358 627-890 (1057)
71 PF10282 Lactonase: Lactonase, 97.1 0.2 4.4E-06 47.3 22.2 232 97-356 12-275 (345)
72 KOG0274 Cdc4 and related F-box 97.0 0.18 3.9E-06 50.4 21.5 276 39-358 104-402 (537)
73 cd00200 WD40 WD40 domain, foun 97.0 0.15 3.3E-06 45.1 19.5 172 164-358 73-251 (289)
74 cd00216 PQQ_DH Dehydrogenases 97.0 0.31 6.6E-06 48.5 22.7 204 141-366 56-327 (488)
75 COG4257 Vgb Streptogramin lyas 96.9 0.21 4.6E-06 44.5 18.4 180 165-366 125-311 (353)
76 PRK11028 6-phosphogluconolacto 96.9 0.35 7.6E-06 45.2 21.6 178 164-356 12-205 (330)
77 PF12768 Rax2: Cortical protei 96.9 0.11 2.4E-06 47.3 16.9 114 198-323 1-130 (281)
78 KOG2120 SCF ubiquitin ligase, 96.8 0.0014 3E-08 58.7 3.9 40 41-80 96-138 (419)
79 PF05096 Glu_cyclase_2: Glutam 96.7 0.031 6.7E-07 49.9 12.0 103 251-357 54-158 (264)
80 KOG0310 Conserved WD40 repeat- 96.7 0.065 1.4E-06 50.9 14.3 174 165-358 49-227 (487)
81 COG4257 Vgb Streptogramin lyas 96.7 0.43 9.3E-06 42.6 18.3 174 168-355 172-346 (353)
82 COG2706 3-carboxymuconate cycl 96.6 0.57 1.2E-05 43.1 24.0 239 83-358 52-323 (346)
83 TIGR02658 TTQ_MADH_Hv methylam 96.6 0.65 1.4E-05 43.8 20.4 63 294-358 258-332 (352)
84 KOG2055 WD40 repeat protein [G 96.6 0.047 1E-06 51.5 12.5 114 252-366 268-384 (514)
85 KOG2055 WD40 repeat protein [G 96.5 0.12 2.6E-06 48.9 14.8 189 148-358 226-419 (514)
86 PLN02919 haloacid dehalogenase 96.5 1 2.2E-05 49.1 24.1 107 252-358 694-835 (1057)
87 KOG0296 Angio-associated migra 96.5 0.16 3.4E-06 46.7 15.0 143 195-358 75-222 (399)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.4 3E-05 44.3 23.5 196 141-358 64-335 (527)
89 PTZ00420 coronin; Provisional 96.3 1.4 3E-05 44.5 21.7 142 197-358 139-295 (568)
90 PTZ00421 coronin; Provisional 96.2 1.4 3.1E-05 43.7 22.6 144 196-358 138-292 (493)
91 PRK11028 6-phosphogluconolacto 96.2 1 2.3E-05 42.0 24.8 181 164-357 57-259 (330)
92 KOG0310 Conserved WD40 repeat- 96.2 0.7 1.5E-05 44.1 18.1 189 142-356 75-268 (487)
93 PLN00181 protein SPA1-RELATED; 96.2 0.75 1.6E-05 48.8 20.6 169 165-356 556-738 (793)
94 KOG0279 G protein beta subunit 96.1 0.59 1.3E-05 41.7 16.1 177 165-358 39-224 (315)
95 PF03178 CPSF_A: CPSF A subuni 96.1 0.41 8.8E-06 44.7 16.5 137 214-356 62-202 (321)
96 PRK04792 tolB translocation pr 96.1 1.6 3.6E-05 42.8 27.8 177 164-357 242-426 (448)
97 PF10282 Lactonase: Lactonase, 95.9 1.1 2.4E-05 42.3 18.5 147 164-324 166-334 (345)
98 KOG0266 WD40 repeat-containing 95.7 1.3 2.7E-05 43.7 18.7 178 164-358 225-411 (456)
99 PF08268 FBA_3: F-box associat 95.7 0.23 5E-06 39.5 11.2 75 249-323 2-89 (129)
100 KOG1036 Mitotic spindle checkp 95.7 0.65 1.4E-05 41.9 14.7 150 215-381 36-187 (323)
101 cd00216 PQQ_DH Dehydrogenases 95.4 1.4 3.1E-05 43.7 17.9 119 190-320 56-191 (488)
102 PRK04043 tolB translocation pr 95.3 3.1 6.7E-05 40.5 19.7 175 164-358 213-402 (419)
103 smart00284 OLF Olfactomedin-li 95.3 2.1 4.6E-05 38.3 16.6 191 172-383 19-235 (255)
104 PF14870 PSII_BNR: Photosynthe 95.2 2.5 5.4E-05 39.0 19.8 204 143-378 68-284 (302)
105 KOG0281 Beta-TrCP (transducin 95.2 0.38 8.2E-06 44.1 11.6 107 246-358 323-430 (499)
106 PF14870 PSII_BNR: Photosynthe 95.2 2.6 5.7E-05 38.9 18.4 187 172-378 4-195 (302)
107 PF02191 OLF: Olfactomedin-lik 95.1 2.3 5E-05 38.1 16.7 176 195-384 30-231 (250)
108 PLN00181 protein SPA1-RELATED; 95.0 3.9 8.4E-05 43.4 20.8 144 195-355 629-792 (793)
109 PF12768 Rax2: Cortical protei 95.0 0.46 9.9E-06 43.3 11.9 107 162-280 14-130 (281)
110 PF06433 Me-amine-dh_H: Methyl 94.9 0.79 1.7E-05 42.6 13.2 193 98-318 116-324 (342)
111 PRK02889 tolB translocation pr 94.8 4.3 9.4E-05 39.6 25.7 177 164-357 220-404 (427)
112 PRK04922 tolB translocation pr 94.8 4.4 9.6E-05 39.5 26.9 178 164-358 228-413 (433)
113 PRK00178 tolB translocation pr 94.7 4.5 9.8E-05 39.3 28.5 177 164-357 223-407 (430)
114 KOG0286 G-protein beta subunit 94.7 3.2 6.9E-05 37.4 18.9 189 145-358 107-305 (343)
115 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 0.88 1.9E-05 45.7 14.1 119 190-320 64-197 (527)
116 KOG0266 WD40 repeat-containing 94.7 4.9 0.00011 39.6 19.5 136 215-358 226-366 (456)
117 COG1520 FOG: WD40-like repeat 94.6 4.3 9.3E-05 38.7 22.1 199 143-369 65-279 (370)
118 PRK05137 tolB translocation pr 94.4 5.6 0.00012 38.9 27.0 178 164-358 226-414 (435)
119 KOG2997 F-box protein FBX9 [Ge 94.3 0.023 4.9E-07 51.3 1.6 43 43-85 107-157 (366)
120 PRK13684 Ycf48-like protein; P 94.2 5 0.00011 37.7 20.5 170 166-356 154-331 (334)
121 TIGR02800 propeller_TolB tol-p 94.1 6 0.00013 38.1 28.1 176 164-356 214-397 (417)
122 KOG0293 WD40 repeat-containing 94.0 2.7 5.8E-05 39.7 14.4 193 166-382 293-493 (519)
123 KOG0296 Angio-associated migra 93.9 5.3 0.00012 37.1 18.5 146 146-316 75-222 (399)
124 KOG0316 Conserved WD40 repeat- 93.9 4.1 8.8E-05 35.7 15.9 134 165-316 40-175 (307)
125 PRK04792 tolB translocation pr 93.9 7.1 0.00015 38.4 23.5 180 163-358 197-384 (448)
126 KOG4378 Nuclear protein COP1 [ 93.9 3.6 7.8E-05 39.8 15.3 114 263-382 187-306 (673)
127 PF03089 RAG2: Recombination a 93.8 4.2 9.1E-05 36.6 14.5 79 179-262 81-174 (337)
128 KOG0315 G-protein beta subunit 93.6 4.9 0.00011 35.5 16.6 171 165-356 62-245 (311)
129 PRK13684 Ycf48-like protein; P 93.6 6.5 0.00014 37.0 22.7 123 252-381 142-269 (334)
130 PRK00178 tolB translocation pr 93.6 7.7 0.00017 37.7 22.1 135 214-358 223-365 (430)
131 KOG0291 WD40-repeat-containing 93.5 9.9 0.00022 38.8 21.6 154 185-357 351-509 (893)
132 PF02191 OLF: Olfactomedin-lik 93.5 3.6 7.7E-05 36.9 14.2 158 139-314 71-247 (250)
133 KOG0315 G-protein beta subunit 93.4 5.3 0.00011 35.3 16.5 131 215-358 62-199 (311)
134 PRK05137 tolB translocation pr 93.2 8.9 0.00019 37.4 22.0 180 163-358 181-368 (435)
135 PLN00033 photosystem II stabil 93.1 8.7 0.00019 37.0 21.4 119 219-347 265-391 (398)
136 PF06433 Me-amine-dh_H: Methyl 93.0 3.4 7.4E-05 38.5 13.4 63 294-358 248-322 (342)
137 KOG0286 G-protein beta subunit 93.0 6.8 0.00015 35.4 17.3 176 166-358 79-261 (343)
138 PF08268 FBA_3: F-box associat 93.0 0.9 2E-05 36.1 8.8 70 294-366 4-86 (129)
139 TIGR02800 propeller_TolB tol-p 92.8 9.8 0.00021 36.7 21.8 135 214-358 214-356 (417)
140 PF03089 RAG2: Recombination a 92.7 2.5 5.4E-05 38.0 11.5 71 136-206 87-175 (337)
141 KOG0647 mRNA export protein (c 92.5 4.6 0.0001 36.6 13.0 121 252-380 83-207 (347)
142 TIGR03032 conserved hypothetic 92.4 5.7 0.00012 36.5 13.8 89 290-383 207-316 (335)
143 KOG0649 WD40 repeat protein [G 92.4 3.5 7.5E-05 36.3 11.8 123 230-357 101-236 (325)
144 PRK04922 tolB translocation pr 92.3 12 0.00026 36.5 22.3 135 214-358 228-370 (433)
145 KOG0316 Conserved WD40 repeat- 92.2 7.6 0.00017 34.1 17.0 197 164-383 81-282 (307)
146 TIGR03074 PQQ_membr_DH membran 92.2 9.2 0.0002 40.2 16.9 120 189-320 188-352 (764)
147 KOG0646 WD40 repeat protein [G 91.7 13 0.00028 35.7 16.8 198 140-358 85-309 (476)
148 KOG1036 Mitotic spindle checkp 91.5 11 0.00023 34.4 16.2 130 165-316 36-165 (323)
149 KOG0274 Cdc4 and related F-box 91.4 17 0.00037 36.6 19.2 142 193-358 338-484 (537)
150 KOG4378 Nuclear protein COP1 [ 91.1 6.5 0.00014 38.1 13.1 93 215-315 188-281 (673)
151 PRK03629 tolB translocation pr 90.9 17 0.00036 35.5 27.1 177 164-357 223-407 (429)
152 TIGR03074 PQQ_membr_DH membran 90.7 25 0.00053 37.1 23.1 204 140-365 188-484 (764)
153 KOG2321 WD40 repeat protein [G 90.4 20 0.00043 35.6 16.0 176 148-350 147-337 (703)
154 KOG0299 U3 snoRNP-associated p 90.3 6.1 0.00013 37.8 12.1 150 188-358 206-358 (479)
155 TIGR02658 TTQ_MADH_Hv methylam 90.2 17 0.00037 34.4 24.4 72 147-225 58-139 (352)
156 COG4946 Uncharacterized protei 90.0 19 0.00042 34.8 23.6 20 263-282 287-306 (668)
157 COG4946 Uncharacterized protei 89.7 21 0.00045 34.7 16.1 178 161-358 104-297 (668)
158 PF03178 CPSF_A: CPSF A subuni 89.6 12 0.00027 34.7 14.1 133 164-313 62-203 (321)
159 KOG0279 G protein beta subunit 89.5 16 0.00034 33.0 17.0 101 255-358 164-264 (315)
160 PRK04043 tolB translocation pr 89.3 22 0.00049 34.5 19.8 138 164-319 257-405 (419)
161 KOG0289 mRNA splicing factor [ 89.1 16 0.00034 35.0 13.7 126 195-337 358-485 (506)
162 PRK02889 tolB translocation pr 89.0 23 0.00051 34.4 21.8 179 164-358 176-362 (427)
163 smart00284 OLF Olfactomedin-li 88.4 18 0.0004 32.4 15.4 158 139-314 76-252 (255)
164 PF07734 FBA_1: F-box associat 87.6 13 0.00028 30.8 11.5 75 249-323 2-92 (164)
165 KOG2048 WD40 repeat protein [G 87.5 35 0.00075 34.5 15.6 54 214-274 47-101 (691)
166 PLN00033 photosystem II stabil 87.4 29 0.00062 33.5 21.6 109 251-366 248-362 (398)
167 KOG0265 U5 snRNP-specific prot 87.2 14 0.0003 33.6 11.6 65 252-316 101-165 (338)
168 KOG0291 WD40-repeat-containing 87.1 39 0.00085 34.8 19.0 107 248-358 357-468 (893)
169 PTZ00421 coronin; Provisional 87.0 12 0.00027 37.2 12.7 105 252-358 87-200 (493)
170 COG1520 FOG: WD40-like repeat 86.7 29 0.00064 32.9 19.5 155 191-365 64-224 (370)
171 KOG0293 WD40 repeat-containing 86.1 26 0.00056 33.4 13.1 182 145-356 322-513 (519)
172 KOG0306 WD40-repeat-containing 86.0 45 0.00097 34.4 16.7 170 163-355 42-218 (888)
173 KOG0639 Transducin-like enhanc 85.4 23 0.00049 34.6 12.7 106 250-358 474-583 (705)
174 PRK03629 tolB translocation pr 84.3 43 0.00092 32.7 22.8 135 214-358 223-365 (429)
175 KOG0318 WD40 repeat stress pro 84.1 45 0.00099 32.8 19.9 71 288-358 446-519 (603)
176 PRK01742 tolB translocation pr 83.7 45 0.00097 32.5 25.3 160 164-346 228-391 (429)
177 KOG1517 Guanine nucleotide bin 82.9 42 0.0009 36.1 14.2 163 176-358 1154-1335(1387)
178 cd00094 HX Hemopexin-like repe 82.9 29 0.00063 29.6 17.0 62 252-317 110-178 (194)
179 KOG0285 Pleiotropic regulator 82.8 14 0.00029 34.5 9.7 104 252-358 162-267 (460)
180 PF13570 PQQ_3: PQQ-like domai 82.2 2.9 6.2E-05 25.4 3.8 25 290-315 16-40 (40)
181 PF13859 BNR_3: BNR repeat-lik 82.2 43 0.00093 31.1 15.4 184 141-326 3-218 (310)
182 PF02897 Peptidase_S9_N: Proly 81.6 52 0.0011 31.7 17.8 182 163-358 201-406 (414)
183 KOG0289 mRNA splicing factor [ 81.5 26 0.00057 33.5 11.2 110 251-366 357-468 (506)
184 KOG0294 WD40 repeat-containing 81.4 44 0.00096 30.7 14.8 51 307-357 172-238 (362)
185 KOG0294 WD40 repeat-containing 80.7 47 0.001 30.6 12.2 95 246-346 46-147 (362)
186 KOG0647 mRNA export protein (c 79.9 49 0.0011 30.3 12.3 130 165-312 95-226 (347)
187 KOG0299 U3 snoRNP-associated p 79.6 61 0.0013 31.3 15.1 144 142-316 209-358 (479)
188 KOG0306 WD40-repeat-containing 79.4 12 0.00025 38.3 8.8 79 289-369 377-464 (888)
189 PF07734 FBA_1: F-box associat 78.8 36 0.00077 28.1 12.5 81 192-279 2-91 (164)
190 COG3391 Uncharacterized conser 78.8 63 0.0014 30.9 15.5 145 194-358 84-241 (381)
191 KOG0285 Pleiotropic regulator 78.7 58 0.0013 30.5 14.7 130 215-358 174-309 (460)
192 KOG2048 WD40 repeat protein [G 77.9 85 0.0018 31.9 14.5 131 231-365 419-556 (691)
193 KOG4649 PQQ (pyrrolo-quinoline 77.5 54 0.0012 29.5 15.8 91 215-317 34-126 (354)
194 KOG4649 PQQ (pyrrolo-quinoline 77.4 54 0.0012 29.5 19.1 177 164-366 33-223 (354)
195 PTZ00420 coronin; Provisional 76.5 92 0.002 31.7 18.4 134 165-317 149-296 (568)
196 KOG4283 Transcription-coupled 76.3 62 0.0013 29.6 11.7 18 263-280 97-114 (397)
197 KOG2321 WD40 repeat protein [G 76.0 51 0.0011 32.9 11.7 104 253-358 146-260 (703)
198 COG3386 Gluconolactonase [Carb 75.5 69 0.0015 29.7 21.0 109 246-358 115-245 (307)
199 PLN03215 ascorbic acid mannose 75.5 51 0.0011 31.4 11.6 35 42-76 3-41 (373)
200 KOG0300 WD40 repeat-containing 75.2 68 0.0015 29.5 12.9 58 300-358 372-430 (481)
201 KOG0263 Transcription initiati 74.8 39 0.00085 34.6 11.0 103 250-358 543-651 (707)
202 KOG0640 mRNA cleavage stimulat 74.5 67 0.0015 29.5 11.3 102 255-356 186-291 (430)
203 KOG0278 Serine/threonine kinas 74.2 64 0.0014 28.8 13.0 60 252-314 235-297 (334)
204 TIGR03118 PEPCTERM_chp_1 conse 74.2 73 0.0016 29.4 12.3 107 252-358 151-281 (336)
205 KOG0645 WD40 repeat protein [G 74.2 67 0.0015 29.0 20.5 122 255-386 164-295 (312)
206 KOG3881 Uncharacterized conser 74.1 77 0.0017 30.0 12.0 110 197-317 162-280 (412)
207 PF09910 DUF2139: Uncharacteri 73.8 73 0.0016 29.2 16.6 159 139-316 38-232 (339)
208 PF03088 Str_synth: Strictosid 73.5 9.6 0.00021 28.1 5.0 49 263-314 37-87 (89)
209 cd00094 HX Hemopexin-like repe 73.3 57 0.0012 27.8 11.8 21 252-274 158-178 (194)
210 KOG0305 Anaphase promoting com 72.7 1E+02 0.0023 30.5 16.1 168 166-358 199-378 (484)
211 KOG0639 Transducin-like enhanc 72.4 27 0.00058 34.2 8.8 107 195-316 476-583 (705)
212 PRK10115 protease 2; Provision 72.2 1.3E+02 0.0028 31.4 24.7 181 163-358 198-396 (686)
213 KOG0318 WD40 repeat stress pro 72.0 1.1E+02 0.0023 30.4 14.9 144 194-354 453-600 (603)
214 PF02239 Cytochrom_D1: Cytochr 71.8 95 0.0021 29.6 13.3 131 214-357 16-159 (369)
215 KOG0278 Serine/threonine kinas 71.6 75 0.0016 28.4 12.5 138 214-365 165-306 (334)
216 KOG0271 Notchless-like WD40 re 71.4 95 0.0021 29.5 12.8 141 195-357 126-277 (480)
217 KOG0640 mRNA cleavage stimulat 71.1 48 0.001 30.4 9.6 105 251-358 226-337 (430)
218 KOG1446 Histone H3 (Lys4) meth 70.1 89 0.0019 28.6 22.6 49 332-382 238-286 (311)
219 PF14583 Pectate_lyase22: Olig 69.6 95 0.0021 29.7 11.8 132 215-356 217-383 (386)
220 COG0823 TolB Periplasmic compo 69.2 88 0.0019 30.5 12.0 106 250-358 246-360 (425)
221 KOG0282 mRNA splicing factor [ 68.9 88 0.0019 30.5 11.4 121 215-345 281-414 (503)
222 KOG0282 mRNA splicing factor [ 68.3 47 0.001 32.2 9.5 63 252-317 269-333 (503)
223 KOG1332 Vesicle coat complex C 67.5 91 0.002 27.8 14.8 110 254-366 176-293 (299)
224 COG3823 Glutamine cyclotransfe 66.2 64 0.0014 28.1 8.9 68 246-315 49-120 (262)
225 KOG1332 Vesicle coat complex C 66.1 98 0.0021 27.6 13.0 58 265-323 237-296 (299)
226 PF02897 Peptidase_S9_N: Proly 65.2 1.3E+02 0.0029 28.8 19.2 200 146-356 134-357 (414)
227 KOG2502 Tub family proteins [G 64.8 8.5 0.00018 35.7 3.8 37 41-77 43-90 (355)
228 PF15525 DUF4652: Domain of un 63.8 92 0.002 26.5 11.3 88 263-356 88-185 (200)
229 PRK01742 tolB translocation pr 62.6 1.6E+02 0.0034 28.7 20.7 131 214-358 228-363 (429)
230 KOG0263 Transcription initiati 62.4 84 0.0018 32.3 10.5 63 251-315 587-650 (707)
231 PF03088 Str_synth: Strictosid 62.1 33 0.00071 25.3 5.8 49 305-355 36-86 (89)
232 COG3386 Gluconolactonase [Carb 59.6 1.5E+02 0.0032 27.5 23.0 170 166-346 87-276 (307)
233 KOG2919 Guanine nucleotide-bin 59.4 1.5E+02 0.0033 27.6 13.3 123 252-383 219-352 (406)
234 COG2706 3-carboxymuconate cycl 59.3 1.6E+02 0.0034 27.7 24.2 200 147-358 52-276 (346)
235 KOG0308 Conserved WD40 repeat- 59.0 1.5E+02 0.0032 30.2 11.2 121 251-373 128-268 (735)
236 PF11768 DUF3312: Protein of u 58.5 2.1E+02 0.0044 28.8 16.2 93 264-358 237-331 (545)
237 KOG3545 Olfactomedin and relat 58.3 1.4E+02 0.003 26.7 15.3 189 166-382 12-228 (249)
238 KOG1898 Splicing factor 3b, su 57.6 2.9E+02 0.0062 30.2 16.5 106 246-353 939-1045(1205)
239 KOG0308 Conserved WD40 repeat- 57.5 2.3E+02 0.0049 29.0 13.3 110 194-316 128-245 (735)
240 KOG4341 F-box protein containi 56.9 10 0.00022 36.3 3.0 40 41-80 70-112 (483)
241 PF03022 MRJP: Major royal jel 56.6 1.6E+02 0.0035 26.9 12.2 63 214-280 34-106 (287)
242 KOG0265 U5 snRNP-specific prot 56.6 1.6E+02 0.0035 27.0 10.5 60 296-358 103-165 (338)
243 KOG0772 Uncharacterized conser 55.9 2.2E+02 0.0047 28.3 16.6 126 252-384 328-470 (641)
244 PF02239 Cytochrom_D1: Cytochr 55.8 1.9E+02 0.0041 27.6 13.4 133 164-316 16-160 (369)
245 KOG1523 Actin-related protein 55.8 1.5E+02 0.0032 27.5 9.9 144 214-369 32-194 (361)
246 KOG1517 Guanine nucleotide bin 55.1 3.2E+02 0.0069 30.0 13.5 127 252-381 1177-1316(1387)
247 PF13013 F-box-like_2: F-box-l 54.9 20 0.00043 27.6 3.8 17 43-59 22-38 (109)
248 smart00564 PQQ beta-propeller 52.4 39 0.00084 18.9 4.1 23 293-316 4-26 (33)
249 KOG0641 WD40 repeat protein [G 52.1 1.6E+02 0.0036 25.7 19.0 102 253-358 152-263 (350)
250 KOG0772 Uncharacterized conser 52.0 2.5E+02 0.0055 27.9 14.7 160 183-361 314-493 (641)
251 TIGR03032 conserved hypothetic 50.8 2.1E+02 0.0046 26.6 13.1 72 214-302 185-258 (335)
252 KOG0321 WD40 repeat-containing 50.7 63 0.0014 32.6 7.3 102 254-358 66-177 (720)
253 KOG1240 Protein kinase contain 49.8 4.1E+02 0.0089 29.6 14.3 84 298-381 1165-1250(1431)
254 KOG0313 Microtubule binding pr 48.7 2.5E+02 0.0053 26.8 10.4 131 214-356 281-418 (423)
255 PF07433 DUF1513: Protein of u 48.5 2.3E+02 0.0049 26.3 19.4 84 140-238 8-96 (305)
256 PF08662 eIF2A: Eukaryotic tra 47.1 1.8E+02 0.0039 24.7 10.2 97 253-356 72-179 (194)
257 KOG0264 Nucleosome remodeling 46.5 2.8E+02 0.0061 26.8 10.9 109 254-365 241-356 (422)
258 COG4447 Uncharacterized protei 46.0 2.4E+02 0.0051 25.8 10.2 99 256-357 229-333 (339)
259 KOG1274 WD40 repeat protein [G 45.8 4E+02 0.0088 28.4 20.8 59 295-356 200-262 (933)
260 PF07433 DUF1513: Protein of u 45.8 2.5E+02 0.0054 26.0 20.2 227 98-356 26-285 (305)
261 PF11768 DUF3312: Protein of u 45.5 2.6E+02 0.0057 28.1 10.6 92 214-316 236-331 (545)
262 KOG0270 WD40 repeat-containing 44.6 3E+02 0.0066 26.7 15.3 92 263-358 352-451 (463)
263 KOG1520 Predicted alkaloid syn 44.1 2.3E+02 0.0051 26.9 9.6 68 252-321 126-214 (376)
264 PRK01029 tolB translocation pr 43.9 3.2E+02 0.0068 26.6 27.2 185 164-358 211-405 (428)
265 KOG1897 Damage-specific DNA bi 43.7 4.6E+02 0.01 28.5 17.4 133 213-358 806-944 (1096)
266 KOG1445 Tumor-specific antigen 43.6 85 0.0018 31.9 6.9 54 263-316 742-800 (1012)
267 PF01011 PQQ: PQQ enzyme repea 43.4 49 0.0011 19.6 3.6 19 297-316 2-20 (38)
268 TIGR02276 beta_rpt_yvtn 40-res 43.0 67 0.0015 19.0 4.3 24 295-318 3-26 (42)
269 PF08662 eIF2A: Eukaryotic tra 42.8 2E+02 0.0043 24.5 8.6 61 295-358 71-135 (194)
270 COG3823 Glutamine cyclotransfe 42.7 2.3E+02 0.005 24.8 15.4 194 137-354 46-257 (262)
271 KOG4499 Ca2+-binding protein R 42.4 2E+02 0.0044 25.6 8.3 43 295-339 222-264 (310)
272 KOG2106 Uncharacterized conser 41.6 3.7E+02 0.008 26.7 19.1 40 165-206 268-308 (626)
273 COG3391 Uncharacterized conser 41.1 3.3E+02 0.0071 26.0 20.7 152 145-317 84-242 (381)
274 KOG0300 WD40 repeat-containing 41.0 3E+02 0.0065 25.5 12.1 64 258-326 373-437 (481)
275 KOG1445 Tumor-specific antigen 40.9 1.2E+02 0.0027 30.8 7.6 99 248-346 673-784 (1012)
276 PF03022 MRJP: Major royal jel 40.6 2.9E+02 0.0063 25.3 20.5 186 146-345 11-254 (287)
277 KOG0292 Vesicle coat complex C 40.4 5E+02 0.011 28.0 14.0 140 139-317 208-351 (1202)
278 PF15525 DUF4652: Domain of un 40.0 2.4E+02 0.0051 24.1 9.9 86 99-197 87-174 (200)
279 KOG4283 Transcription-coupled 37.3 3.4E+02 0.0073 25.1 12.1 59 215-278 125-183 (397)
280 KOG1274 WD40 repeat protein [G 36.4 5.7E+02 0.012 27.4 13.1 62 296-357 66-127 (933)
281 PF09910 DUF2139: Uncharacteri 34.6 3.8E+02 0.0082 24.8 13.0 135 214-356 78-230 (339)
282 KOG1273 WD40 repeat protein [G 34.6 2.5E+02 0.0053 26.1 7.9 61 295-358 34-97 (405)
283 KOG0305 Anaphase promoting com 34.4 4.8E+02 0.01 26.0 11.4 62 295-358 228-290 (484)
284 KOG1273 WD40 repeat protein [G 34.2 3.9E+02 0.0085 24.9 16.8 50 165-225 46-98 (405)
285 KOG1539 WD repeat protein [Gen 33.8 6E+02 0.013 27.0 15.7 57 263-321 556-613 (910)
286 PRK10115 protease 2; Provision 33.3 5.9E+02 0.013 26.7 20.0 148 164-324 247-404 (686)
287 PF12217 End_beta_propel: Cata 33.0 3.7E+02 0.0081 24.3 13.5 154 187-345 76-257 (367)
288 KOG3545 Olfactomedin and relat 32.7 3.6E+02 0.0079 24.1 12.7 158 139-314 70-246 (249)
289 PTZ00334 trans-sialidase; Prov 32.3 4.3E+02 0.0093 28.1 10.3 82 263-344 287-386 (780)
290 KOG0288 WD40 repeat protein Ti 32.0 4.8E+02 0.01 25.2 10.5 127 246-381 305-441 (459)
291 KOG0646 WD40 repeat protein [G 31.9 1.3E+02 0.0028 29.3 6.0 62 294-356 90-153 (476)
292 KOG2919 Guanine nucleotide-bin 31.8 4.4E+02 0.0094 24.7 12.7 49 296-344 309-367 (406)
293 cd01206 Homer Homer type EVH1 31.6 1.9E+02 0.0042 22.2 5.8 48 98-152 9-57 (111)
294 KOG1897 Damage-specific DNA bi 31.2 7.2E+02 0.016 27.1 14.2 145 147-308 787-936 (1096)
295 PF01436 NHL: NHL repeat; Int 30.7 98 0.0021 16.9 3.7 18 294-311 11-28 (28)
296 KOG2106 Uncharacterized conser 29.4 5.8E+02 0.013 25.4 12.3 100 254-356 214-316 (626)
297 PF14781 BBS2_N: Ciliary BBSom 29.4 3E+02 0.0065 22.1 11.9 61 255-321 66-134 (136)
298 KOG3926 F-box proteins [Amino 29.3 81 0.0018 28.4 4.0 21 39-59 198-218 (332)
299 KOG1446 Histone H3 (Lys4) meth 29.1 4.6E+02 0.01 24.2 16.6 136 214-358 36-172 (311)
300 PF12217 End_beta_propel: Cata 28.8 4.4E+02 0.0096 23.8 16.0 155 139-303 77-257 (367)
301 KOG0643 Translation initiation 28.4 4.6E+02 0.0099 23.9 11.7 156 189-357 57-221 (327)
302 KOG0302 Ribosome Assembly prot 26.6 1.9E+02 0.004 27.5 5.9 61 298-358 316-380 (440)
303 KOG1428 Inhibitor of type V ad 26.5 1E+03 0.022 27.8 11.8 48 194-260 496-543 (3738)
304 KOG0319 WD40-repeat-containing 26.5 7.6E+02 0.016 25.8 13.7 64 293-356 556-619 (775)
305 KOG0280 Uncharacterized conser 26.3 2.3E+02 0.005 26.0 6.3 73 296-371 178-265 (339)
306 PF11947 DUF3464: Protein of u 26.2 81 0.0018 25.9 3.2 21 39-59 46-66 (153)
307 KOG0303 Actin-binding protein 25.7 6.1E+02 0.013 24.4 12.7 134 214-358 154-296 (472)
308 KOG0319 WD40-repeat-containing 24.1 8.4E+02 0.018 25.5 14.6 104 246-358 67-181 (775)
309 KOG0771 Prolactin regulatory e 23.0 6.8E+02 0.015 24.0 13.5 106 251-358 196-313 (398)
310 PF06977 SdiA-regulated: SdiA- 22.9 3.7E+02 0.008 24.0 7.1 58 296-354 183-248 (248)
311 KOG4547 WD40 repeat-containing 22.5 8E+02 0.017 24.7 10.1 93 255-358 72-174 (541)
312 KOG0283 WD40 repeat-containing 22.4 9.1E+02 0.02 25.3 13.4 105 251-356 461-576 (712)
313 PF14583 Pectate_lyase22: Olig 22.1 7.1E+02 0.015 24.0 9.2 73 252-325 46-121 (386)
314 KOG3881 Uncharacterized conser 21.8 7.1E+02 0.015 23.8 12.2 94 214-316 226-322 (412)
315 PF08309 LVIVD: LVIVD repeat; 21.8 2.1E+02 0.0045 17.6 4.2 27 331-358 5-31 (42)
316 KOG2394 WD40 protein DMR-N9 [G 21.7 1.7E+02 0.0038 29.1 5.0 60 295-356 301-362 (636)
317 KOG1587 Cytoplasmic dynein int 21.7 2.5E+02 0.0054 28.5 6.4 61 297-357 455-517 (555)
318 COG0823 TolB Periplasmic compo 20.8 7.9E+02 0.017 24.0 15.3 100 214-323 262-368 (425)
319 KOG0649 WD40 repeat protein [G 20.5 6.3E+02 0.014 22.7 17.0 153 172-347 97-265 (325)
320 KOG0272 U4/U6 small nuclear ri 20.4 8E+02 0.017 23.8 11.9 103 248-356 310-418 (459)
321 KOG0295 WD40 repeat-containing 20.0 7.6E+02 0.017 23.5 18.3 238 79-372 116-378 (406)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=307.96 Aligned_cols=240 Identities=12% Similarity=0.199 Sum_probs=207.7
Q ss_pred EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC
Q 016552 101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP 180 (387)
Q Consensus 101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~ 180 (387)
.+..||+.+++|..++++|.+ +..+++++++++||++||.... ....+.+++|||.+++|.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~---------------r~~~~~a~l~~~IYviGG~~~~-~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNH---------------IINYASAIVDNEIIIAGGYNFN-NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcc---------------ccceEEEEECCEEEEEcCCCCC-CCccceEEEEECCCCeEeeCC
Confidence 467899999999999999873 3457889999999999996422 235678999999999999999
Q ss_pred CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee
Q 016552 181 ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV 260 (387)
Q Consensus 181 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg 260 (387)
+|+.+|..+++++++++||++||.+. ....+++++||+.+++ |..+++||.++.. +++++++|+||++||
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~----W~~~~~mp~~r~~---~~~~~~~g~IYviGG 406 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDK----WKMLPDMPIALSS---YGMCVLDQYIYIIGG 406 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCe----EEECCCCCccccc---ccEEEECCEEEEEeC
Confidence 99999999999999999999999854 2346789999999999 9999999988754 678899999999998
Q ss_pred eC-----------------------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC------CeEEEE
Q 016552 261 KG-----------------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSRY 311 (387)
Q Consensus 261 ~~-----------------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~------~~l~~y 311 (387)
.. +.+++|||++++|+.+++ |+.++..+++++.+|+||++||.+ ..+.+|
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred CCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence 53 358999999999999987 777777888899999999999853 247899
Q ss_pred eCCC-CceeEccccccccCceEEEEeCCeEEEEecCCC--eEEEEeccCCCCCCceEEeCCCC
Q 016552 312 DEVM-DDWKEVVKSDLLKGARHAAAGGGRVCAVCENGG--GIVVVDVKAAAAPTIFVVDTPLG 371 (387)
Q Consensus 312 d~~~-~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~--~i~~~d~~~~~~~~~W~~~~p~~ 371 (387)
||++ ++|+.+.++|..+..+++++++|+||++||..+ .+..||+.+. +|...+|..
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~----~W~~~~~~~ 544 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY----EWNHICHQH 544 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc----cccchhhhc
Confidence 9999 899999999998889999999999999998644 7899999998 999866644
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.5e-37 Score=301.96 Aligned_cols=293 Identities=19% Similarity=0.248 Sum_probs=237.6
Q ss_pred CCCCChHHHHHHHhhhcCchhhh-------hhhHhhhhhhcCCC------CCce----eeEEeecCCCCCCCCCCeEEEE
Q 016552 42 LLPGLPDHIAHLCLSHVHPSILH-------NVCHSWRRLIYSPS------FPPF----LSLYALFSPKSNSSSTPIHLFT 104 (387)
Q Consensus 42 ~~~~LPddl~~~iL~rLPl~~~r-------~VcK~W~~li~~~~------f~~~----~~l~~~~~~~~~~~~~~~~~~~ 104 (387)
-.|-||...+.++....++.+.. .-.|.|..+..... -.+. -.++.+++... .......+..
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~-~~~~~~~ve~ 305 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNR-QGQSLRSVEC 305 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCC-CCcccceeEE
Confidence 34777777777777666622111 12224544443211 1011 24666665310 0122345889
Q ss_pred EeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC
Q 016552 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184 (387)
Q Consensus 105 ~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~ 184 (387)
|||.++.|..+++||.+ |..+++++++|.||++||.+. ....++.+++|||.+++|..+|+|+.
T Consensus 306 yd~~~~~w~~~a~m~~~---------------r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~ 369 (571)
T KOG4441|consen 306 YDPKTNEWSSLAPMPSP---------------RCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNT 369 (571)
T ss_pred ecCCcCcEeecCCCCcc---------------cccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccC
Confidence 99999999999999973 445889999999999999873 25677899999999999999999999
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC--
Q 016552 185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-- 262 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-- 262 (387)
+|..+++++++|+||++||.+. ...++++|.||+.+++ |..+++|+..+.. +.+++++|+||++||.+
T Consensus 370 ~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~----W~~va~m~~~r~~---~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 370 KRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNK----WTPVAPMLTRRSG---HGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccccceeEEECCEEEEEecccc---ccccccEEEecCCCCc----ccccCCCCcceee---eEEEEECCEEEEEcCcCCC
Confidence 9999999999999999999985 4577899999999999 9999999986654 88999999999999955
Q ss_pred ----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeCCCCceeEccccccccCceEE
Q 016552 263 ----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSRYDEVMDDWKEVVKSDLLKGARHA 333 (387)
Q Consensus 263 ----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~-----~l~~yd~~~~~W~~v~~~~~~~~~~~~ 333 (387)
+++++|||.+++|+.+++ |...+.+.++++.+++||++||.++ ++.+||+++++|+.+..+...+...++
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccccceEEEEcCCCCceeecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 789999999999999998 8888888889999999999998654 489999999999999999999999999
Q ss_pred EEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552 334 AAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 334 ~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~ 366 (387)
+..+++||++||.. +.+.+||+.+. +|+.
T Consensus 519 ~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d----~W~~ 552 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGNNNLNTVECYDPETD----TWTE 552 (571)
T ss_pred EEECCEEEEEecccCccccceeEEcCCCCC----ceee
Confidence 99999999999852 57899999988 9997
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=272.18 Aligned_cols=224 Identities=22% Similarity=0.331 Sum_probs=192.1
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|+.++... .......++.|||.+++|..+++|... |.++++++++|.||++||.++ ...+
T Consensus 334 ~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~---------------R~~~~v~~l~g~iYavGG~dg--~~~l 395 (571)
T KOG4441|consen 334 KLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTK---------------RSDFGVAVLDGKLYAVGGFDG--EKSL 395 (571)
T ss_pred EEEEEccccC-CCcccceEEEecCCCCceeccCCccCc---------------cccceeEEECCEEEEEecccc--cccc
Confidence 5888887410 012234589999999999999999873 667999999999999999886 5677
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
+.+++|||.+++|..+++|+.+|+.+++++.+++||++||.+. ....++++++|||.+++ |+.+++|+.+|..
T Consensus 396 ~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~--~~~~l~sve~YDP~t~~----W~~~~~M~~~R~~- 468 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG--SSNCLNSVECYDPETNT----WTLIAPMNTRRSG- 468 (571)
T ss_pred ccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC--CccccceEEEEcCCCCc----eeecCCccccccc-
Confidence 8999999999999999999999999999999999999999877 33478999999999999 9999999988765
Q ss_pred cceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeC
Q 016552 244 EAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSRYDE 313 (387)
Q Consensus 244 ~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~-----~l~~yd~ 313 (387)
+.+++++++||++||+. ..++.|||++++|+.++. |...+.+.++++.++++|++||.++ .+.+||+
T Consensus 469 --~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 469 --FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred --ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-CccccccccEEEECCEEEEEecccCccccceeEEcCC
Confidence 77999999999999976 568999999999999976 7888888889999999999998543 6999999
Q ss_pred CCCceeEccccccccCceEEEE
Q 016552 314 VMDDWKEVVKSDLLKGARHAAA 335 (387)
Q Consensus 314 ~~~~W~~v~~~~~~~~~~~~~~ 335 (387)
++++|+.+..+...+...+++.
T Consensus 546 ~~d~W~~~~~~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 546 ETDTWTEVTEPESGRGGAGVAV 567 (571)
T ss_pred CCCceeeCCCccccccCcceEE
Confidence 9999999998444555444444
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.2e-32 Score=271.95 Aligned_cols=233 Identities=18% Similarity=0.252 Sum_probs=197.7
Q ss_pred EEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC
Q 016552 102 LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE 181 (387)
Q Consensus 102 ~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~ 181 (387)
...|++..++|..++..+. +..++++++++.||++||.... ....+++++||+.+++|..+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~ 328 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHY----------------VYCFGSVVLNNVIYFIGGMNKN-NLSVNSVVSYDTKTKSWNKVPE 328 (534)
T ss_pred eeecchhhhhcccccCccc----------------cccceEEEECCEEEEECCCcCC-CCeeccEEEEeCCCCeeeECCC
Confidence 4567888888988765543 2236889999999999997542 2345689999999999999999
Q ss_pred CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeee
Q 016552 182 LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK 261 (387)
Q Consensus 182 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~ 261 (387)
|+.+|..+++++.+++||++||... ....+++++||+.+++ |+.+++||.++.. +++++++|+||++||.
T Consensus 329 ~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~lp~~r~~---~~~~~~~~~iYv~GG~ 398 (534)
T PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESK----WREEPPLIFPRYN---PCVVNVNNLIYVIGGI 398 (534)
T ss_pred CCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCc----eeeCCCcCcCCcc---ceEEEECCEEEEECCc
Confidence 9999999999999999999999864 3356789999999999 9999999987654 7788899999999995
Q ss_pred C------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--------CeEEEEeCCCCceeEccccccc
Q 016552 262 G------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSRYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 262 ~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--------~~l~~yd~~~~~W~~v~~~~~~ 327 (387)
. +.+++||+.+++|+.+++ ++.++.++++++.+++||++||.+ ..+++||+++++|+.+..++..
T Consensus 399 ~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 399 SKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred CCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence 3 679999999999999987 677777888888999999999842 2489999999999999988877
Q ss_pred cCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552 328 KGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 328 ~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~ 366 (387)
+..+.++.++|+||++||.. +.+++||+.++ +|..
T Consensus 478 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~ 517 (534)
T PHA03098 478 RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN----TWTL 517 (534)
T ss_pred cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC----EEEe
Confidence 77777888999999999853 57899999988 9996
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-31 Score=251.82 Aligned_cols=256 Identities=15% Similarity=0.211 Sum_probs=190.3
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|++++...........+++||+.+++|..+++++..|+. .+.++++++++++||++||... ....
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~-----------~~~~~~~~~~~~~iyv~GG~~~--~~~~ 100 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI-----------SCLGVRMVAVGTKLYIFGGRDE--KREF 100 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC-----------ccCceEEEEECCEEEEECCCCC--CCcc
Confidence 57888763100001123589999999999998877543221 1346889999999999999754 3456
Q ss_pred CccEEEeccCCceeeCCCC-----CCCCcceeEEEeCCEEEEEecCCCCC---CCCCcceEEEEECCCCccccCeEEcCC
Q 016552 164 TRPLIFDPICRTWTFGPEL-----VTPRRWCAAGCSRGAVYVASGIGSQF---SSDVAKSVEKWDLMNGEKNSRWEKTGE 235 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~v~~yd~~~~~~~~~W~~~~~ 235 (387)
+++++||+.+++|+++++| |.+|..+++++.+++|||+||..... ....++++++||+.+++ |..+++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~l~~ 176 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK----WVQLPD 176 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe----EeeCCC
Confidence 7899999999999999887 78899999999999999999986421 11245689999999999 999987
Q ss_pred CCCCCccccceEEEEECCEEEEEeeeC-------------CeEEEEECCCCceeeccc--ccccCCCCcEEEEeCCeEEE
Q 016552 236 LKDGRFSREAIDAVGWKGKLCLVNVKG-------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYG 300 (387)
Q Consensus 236 ~p~~~~~~~~~~~~~~~g~lyv~gg~~-------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~ 300 (387)
++.+...|..+.+++++++||+++|.. +++++||+++++|++++. .+|..+..+++++.+++||+
T Consensus 177 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv 256 (341)
T PLN02153 177 PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII 256 (341)
T ss_pred CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence 753333344577888999999998742 579999999999999874 24666677788888999999
Q ss_pred EeCCC--------------CeEEEEeCCCCceeEccc-----cccccCceEE-EEe-CCeEEEEecCC------CeEEEE
Q 016552 301 IDENS--------------CTLSRYDEVMDDWKEVVK-----SDLLKGARHA-AAG-GGRVCAVCENG------GGIVVV 353 (387)
Q Consensus 301 ~~~~~--------------~~l~~yd~~~~~W~~v~~-----~~~~~~~~~~-~~~-~g~i~v~gg~~------~~i~~~ 353 (387)
+||.. .++++||+++++|+.+.. +|+.+..+++ +.. +++|||+||.. .+++.|
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~ 336 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFY 336 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEE
Confidence 99842 268999999999999863 2332322223 333 45899999862 456766
Q ss_pred ecc
Q 016552 354 DVK 356 (387)
Q Consensus 354 d~~ 356 (387)
++.
T Consensus 337 ~~~ 339 (341)
T PLN02153 337 AVN 339 (341)
T ss_pred ecc
Confidence 654
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.2e-31 Score=251.02 Aligned_cols=233 Identities=13% Similarity=0.176 Sum_probs=183.2
Q ss_pred CCCCeecCCCCCCC-CcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC-CC
Q 016552 108 VSSTWDPLPRPPPD-PPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TP 185 (387)
Q Consensus 108 ~~~~W~~l~~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p-~~ 185 (387)
...+|.++...... | ..|.++++++++++||++||.........+++++||+.+++|+++++++ .+
T Consensus 5 ~~~~W~~~~~~~~~~P------------~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p 72 (341)
T PLN02153 5 LQGGWIKVEQKGGKGP------------GPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP 72 (341)
T ss_pred cCCeEEEecCCCCCCC------------CCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC
Confidence 56779988763211 1 1156688999999999999975432334578999999999999998874 34
Q ss_pred Cc---ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC-----CCCCccccceEEEEECCEEEE
Q 016552 186 RR---WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL-----KDGRFSREAIDAVGWKGKLCL 257 (387)
Q Consensus 186 r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~g~lyv 257 (387)
|. .+++++++++||++||... ...++++++||+.+++ |..+++| |.+| ..+++++++++||+
T Consensus 73 ~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~----W~~~~~~~~~~~p~~R---~~~~~~~~~~~iyv 142 (341)
T PLN02153 73 RISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNE----WTFLTKLDEEGGPEAR---TFHSMASDENHVYV 142 (341)
T ss_pred CCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCE----EEEeccCCCCCCCCCc---eeeEEEEECCEEEE
Confidence 43 6778899999999999865 2346789999999999 9999877 5444 34788899999999
Q ss_pred EeeeC-----------CeEEEEECCCCceeecccc--cccCCCCcEEEEeCCeEEEEeCC-------------CCeEEEE
Q 016552 258 VNVKG-----------AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDEN-------------SCTLSRY 311 (387)
Q Consensus 258 ~gg~~-----------~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~~~-------------~~~l~~y 311 (387)
+||.. .++++||+++++|+.++.. .+..+.++++++.+++||+++|. ...+++|
T Consensus 143 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y 222 (341)
T PLN02153 143 FGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFF 222 (341)
T ss_pred ECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEE
Confidence 99964 3689999999999998752 12455677788889999999763 2468999
Q ss_pred eCCCCceeEccc---cccccCceEEEEeCCeEEEEecCC--------------CeEEEEeccCCCCCCceEE
Q 016552 312 DEVMDDWKEVVK---SDLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 312 d~~~~~W~~v~~---~~~~~~~~~~~~~~g~i~v~gg~~--------------~~i~~~d~~~~~~~~~W~~ 366 (387)
|+++++|+++.. +|..+..++++.++++|||+||.. +++++||+.+. .|+.
T Consensus 223 d~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~----~W~~ 290 (341)
T PLN02153 223 DPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL----VWEK 290 (341)
T ss_pred EcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc----EEEe
Confidence 999999999874 455667788899999999999941 37899999987 9994
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.5e-31 Score=260.51 Aligned_cols=202 Identities=12% Similarity=0.166 Sum_probs=177.1
Q ss_pred EEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL 221 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 221 (387)
.+..++.||++||... ....+.++.|||.+++|..+++|+.+|..+++++.+++||++||.+. ..+++.||+
T Consensus 267 ~~~~~~~lyviGG~~~--~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN--NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC--CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------CCceEEEEC
Confidence 4558999999999754 34567799999999999999999999998999999999999999743 146899999
Q ss_pred CCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCCCceeecccccccCCCCcEEEEeCCeE
Q 016552 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVL 298 (387)
Q Consensus 222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~l 298 (387)
.+++ |..+++||.++.. +++++++|+||++||.. ..+++|||.+++|+.+++ ++.++..+++++.+|+|
T Consensus 339 ~~n~----W~~~~~l~~~r~~---~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 339 GDAA----WVNMPSLLKPRCN---PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRL 410 (480)
T ss_pred CCCe----EEECCCCCCCCcc---cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEE
Confidence 9999 9999999987754 77889999999999965 568999999999999987 77777778888899999
Q ss_pred EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552 299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~ 366 (387)
|++|| ...+||+++++|+.+.+++..+..++++.++|+||++||.. ..+.+||+.++ +|.+
T Consensus 411 Yv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~----~W~~ 476 (480)
T PHA02790 411 FLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY----SWNI 476 (480)
T ss_pred EEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC----eEEe
Confidence 99985 47889999999999999988888889999999999999842 56899999988 8986
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.2e-30 Score=253.10 Aligned_cols=240 Identities=14% Similarity=0.178 Sum_probs=190.7
Q ss_pred EEEEEeCCC----CCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCce
Q 016552 101 HLFTFDPVS----STWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW 176 (387)
Q Consensus 101 ~~~~~d~~~----~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W 176 (387)
..+++++.+ ++|..+.++...|. .|.+|++++++++||++||.........+++++||+.+++|
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~------------pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W 205 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPG------------LRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTW 205 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCC------------CccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEE
Confidence 356667755 79999886533221 26678999999999999997543223346799999999999
Q ss_pred eeCCCC---CC-CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC---CCCCccccceEEE
Q 016552 177 TFGPEL---VT-PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL---KDGRFSREAIDAV 249 (387)
Q Consensus 177 ~~l~~~---p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~ 249 (387)
+.++++ |. .|..+++++++++|||+||... ...++++++||+.+++ |+.++++ |.+| ..++++
T Consensus 206 ~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R---~~h~~~ 275 (470)
T PLN02193 206 SISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNE----WKLLTPVEEGPTPR---SFHSMA 275 (470)
T ss_pred EeCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCE----EEEcCcCCCCCCCc---cceEEE
Confidence 998754 33 2457788899999999999865 2356789999999999 9999888 5444 447888
Q ss_pred EECCEEEEEeeeC-----CeEEEEECCCCceeeccc--ccccCCCCcEEEEeCCeEEEEeCCC----CeEEEEeCCCCce
Q 016552 250 GWKGKLCLVNVKG-----AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENS----CTLSRYDEVMDDW 318 (387)
Q Consensus 250 ~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~~~~~~----~~l~~yd~~~~~W 318 (387)
+++++||++||.. .++++||+.+++|+.++. .++..+.++++++.+++||+++|.. ..+++||+++++|
T Consensus 276 ~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 276 ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 8999999999965 678999999999998864 2345566778888899999999854 4699999999999
Q ss_pred eEcccc---ccccCceEEEEeCCeEEEEecCC--------------CeEEEEeccCCCCCCceEE
Q 016552 319 KEVVKS---DLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 319 ~~v~~~---~~~~~~~~~~~~~g~i~v~gg~~--------------~~i~~~d~~~~~~~~~W~~ 366 (387)
+.+..+ |..+..++++.++++|||+||.. +++++||+.+. +|..
T Consensus 356 ~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~----~W~~ 416 (470)
T PLN02193 356 TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL----QWER 416 (470)
T ss_pred EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC----EEEE
Confidence 998754 55666788899999999999842 36899999988 8995
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-31 Score=265.04 Aligned_cols=214 Identities=9% Similarity=0.149 Sum_probs=178.3
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|+.++... .......++.|||.+++|..+++|+.+ |..+++++++|+||++||..+ ....
T Consensus 305 ~IYviGG~~~-~~~~~~~v~~Yd~~~n~W~~~~~m~~~---------------R~~~~~~~~~g~IYviGG~~~--~~~~ 366 (557)
T PHA02713 305 EIIIAGGYNF-NNPSLNKVYKINIENKIHVELPPMIKN---------------RCRFSLAVIDDTIYAIGGQNG--TNVE 366 (557)
T ss_pred EEEEEcCCCC-CCCccceEEEEECCCCeEeeCCCCcch---------------hhceeEEEECCEEEEECCcCC--CCCC
Confidence 5777776310 011223588999999999999999873 556899999999999999754 3346
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCC---------------CCCCcceEEEEECCCCcccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQF---------------SSDVAKSVEKWDLMNGEKNS 228 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------------~~~~~~~v~~yd~~~~~~~~ 228 (387)
+.+++|||.+++|..+++||.+|..+++++++++|||+||.+... +....+++++|||.+++
T Consensus 367 ~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--- 443 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--- 443 (557)
T ss_pred ceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---
Confidence 789999999999999999999999999999999999999986421 01135789999999999
Q ss_pred CeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECCC-CceeecccccccCCCCcEEEEeCCeEEEE
Q 016552 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVA-NTWDDMREGMVRGWRGPVAAMDEEVLYGI 301 (387)
Q Consensus 229 ~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~-~~W~~~~~~~~~~~~~~~~~~~~~~ly~~ 301 (387)
|+.+++|+.++.. +.+++++|+||++||.. ..+++|||++ ++|+.+++ ++..+...++++.+|+||++
T Consensus 444 -W~~v~~m~~~r~~---~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r~~~~~~~~~~~iyv~ 518 (557)
T PHA02713 444 -WETLPNFWTGTIR---PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRLSALHTILHDNTIMML 518 (557)
T ss_pred -EeecCCCCccccc---CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCcccccceeEEECCEEEEE
Confidence 9999999987754 77899999999999863 3579999999 89999987 88888889999999999999
Q ss_pred eCCCC--eEEEEeCCCCceeEccc
Q 016552 302 DENSC--TLSRYDEVMDDWKEVVK 323 (387)
Q Consensus 302 ~~~~~--~l~~yd~~~~~W~~v~~ 323 (387)
||.++ .+.+||+++++|+.+.+
T Consensus 519 Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred eeecceeehhhcCcccccccchhh
Confidence 99766 68999999999998775
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=3.6e-30 Score=241.02 Aligned_cols=219 Identities=14% Similarity=0.167 Sum_probs=174.4
Q ss_pred EEEEEe-CCC-CCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCce--
Q 016552 101 HLFTFD-PVS-STWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW-- 176 (387)
Q Consensus 101 ~~~~~d-~~~-~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W-- 176 (387)
.+++|+ +.. .+|..++++|.+ |..+++++++++||++||... ....+++++||+.+++|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~---------------r~~~~~~~~~~~lyviGG~~~--~~~~~~v~~~d~~~~~w~~ 102 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYE---------------AAYGASVSVENGIYYIGGSNS--SERFSSVYRITLDESKEEL 102 (323)
T ss_pred eeEEEecCCCceeEEEcccCCcc---------------ccceEEEEECCEEEEEcCCCC--CCCceeEEEEEEcCCceee
Confidence 366664 433 379999988863 333667888999999999754 34567899999999998
Q ss_pred --eeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECC
Q 016552 177 --TFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKG 253 (387)
Q Consensus 177 --~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g 253 (387)
+.+++||.+|..+++++.+++|||+||... ....+++++||+.+++ |+.+++||. +|. .+.++++++
T Consensus 103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~p~~~r~---~~~~~~~~~ 172 (323)
T TIGR03548 103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQE----WFELPDFPGEPRV---QPVCVKLQN 172 (323)
T ss_pred eeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCC----eeECCCCCCCCCC---cceEEEECC
Confidence 789999999999999999999999999754 2346789999999999 999998874 443 366788999
Q ss_pred EEEEEeeeC----CeEEEEECCCCceeecccc----cccCCCC-cEEEEeCCeEEEEeCCC-------------------
Q 016552 254 KLCLVNVKG----AEGAVYDVVANTWDDMREG----MVRGWRG-PVAAMDEEVLYGIDENS------------------- 305 (387)
Q Consensus 254 ~lyv~gg~~----~~i~~yD~~~~~W~~~~~~----~~~~~~~-~~~~~~~~~ly~~~~~~------------------- 305 (387)
+||++||.. .++++||+++++|+.++.. .+....+ .++++.+++||++||.+
T Consensus 173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 252 (323)
T TIGR03548 173 ELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESL 252 (323)
T ss_pred EEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhh
Confidence 999999975 4678999999999998762 1222222 33455678999999853
Q ss_pred ------------------CeEEEEeCCCCceeEcccccc-ccCceEEEEeCCeEEEEecC
Q 016552 306 ------------------CTLSRYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 306 ------------------~~l~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~g~i~v~gg~ 346 (387)
..+++||+++++|+.+..+|. .+..+.++.++++||++||.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 253 KGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred hhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 358999999999999997764 56677889999999999985
No 11
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=1.9e-29 Score=246.52 Aligned_cols=252 Identities=17% Similarity=0.247 Sum_probs=189.3
Q ss_pred eEEeecCCCCCCCCCC--eEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCC
Q 016552 84 SLYALFSPKSNSSSTP--IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNP 161 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~--~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~ 161 (387)
.+|++++.. ..... ..+++||+.+++|..++++...|.. .+.++++++++++||++||... ..
T Consensus 177 ~iyv~GG~~--~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-----------~~~~~~~v~~~~~lYvfGG~~~--~~ 241 (470)
T PLN02193 177 KIYSFGGEF--TPNQPIDKHLYVFDLETRTWSISPATGDVPHL-----------SCLGVRMVSIGSTLYVFGGRDA--SR 241 (470)
T ss_pred EEEEECCcC--CCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-----------cccceEEEEECCEEEEECCCCC--CC
Confidence 577777631 01111 2489999999999987654332211 1446788999999999999765 34
Q ss_pred CCCccEEEeccCCceeeCCCC---CCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC
Q 016552 162 ALTRPLIFDPICRTWTFGPEL---VTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD 238 (387)
Q Consensus 162 ~~~~~~vyd~~t~~W~~l~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~ 238 (387)
..+++++||+.+++|++++++ |.+|..+++++.+++|||+||.+. ...++++++||+.+++ |+.++....
T Consensus 242 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~----W~~~~~~~~ 314 (470)
T PLN02193 242 QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKK----WFHCSTPGD 314 (470)
T ss_pred CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCE----EEeCCCCCC
Confidence 578999999999999999988 789999999999999999999865 2356789999999999 999875221
Q ss_pred CCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeecccc--cccCCCCcEEEEeCCeEEEEeCCC-------
Q 016552 239 GRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS------- 305 (387)
Q Consensus 239 ~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~~~~------- 305 (387)
....|..+.++++++++|+++|.. +++++||+++++|+.++.. .|..+..+++++.+++||++||..
T Consensus 315 ~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 394 (470)
T PLN02193 315 SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAH 394 (470)
T ss_pred CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccc
Confidence 112234477888999999999864 7899999999999998742 355666778888899999999842
Q ss_pred -------CeEEEEeCCCCceeEcccc------ccccCceE--EEEeC--CeEEEEecCC------CeEEEEeccC
Q 016552 306 -------CTLSRYDEVMDDWKEVVKS------DLLKGARH--AAAGG--GRVCAVCENG------GGIVVVDVKA 357 (387)
Q Consensus 306 -------~~l~~yd~~~~~W~~v~~~------~~~~~~~~--~~~~~--g~i~v~gg~~------~~i~~~d~~~ 357 (387)
.++++||+++++|+.+..+ |..|+.++ ++.+. +.++++||.+ ++++.|++++
T Consensus 395 ~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 395 VGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred cCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 2589999999999998743 23343332 22333 4499999863 5778887763
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=7.8e-30 Score=241.16 Aligned_cols=236 Identities=17% Similarity=0.193 Sum_probs=178.4
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeC--CCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC--
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDP--VSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF-- 159 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-- 159 (387)
.+|+.++. ....+++||+ .+++|..+++||..+ |..+.+++++++||++||.....
T Consensus 19 ~vyv~GG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 19 KVYVGLGS------AGTSWYKLDLKKPSKGWQKIADFPGGP--------------RNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred EEEEEccc------cCCeeEEEECCCCCCCceECCCCCCCC--------------cccceEEEECCEEEEEeCCCCCCCC
Confidence 47877653 2245888885 578999999988421 44578999999999999975321
Q ss_pred --CCCCCccEEEeccCCceeeCC-CCCCCCcceeEE-EeCCEEEEEecCCCCC-----------CC--------------
Q 016552 160 --NPALTRPLIFDPICRTWTFGP-ELVTPRRWCAAG-CSRGAVYVASGIGSQF-----------SS-------------- 210 (387)
Q Consensus 160 --~~~~~~~~vyd~~t~~W~~l~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~-----------~~-------------- 210 (387)
....+++++|||.+++|++++ ++|.+|..++++ +.+++||++||.+... +.
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 124678999999999999997 456666666555 6899999999975310 00
Q ss_pred ------CCcceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECCEEEEEeeeC------CeEEEEE--CCCCce
Q 016552 211 ------DVAKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGKLCLVNVKG------AEGAVYD--VVANTW 275 (387)
Q Consensus 211 ------~~~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD--~~~~~W 275 (387)
...+.+++||+.+++ |+.+++||. ++. .+.+++++++||++||.. ..++.|| +++++|
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~----W~~~~~~p~~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQ----WRNLGENPFLGTA---GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred CChhHcCccceEEEEECCCCc----eeECccCCCCcCC---CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 013689999999999 999999985 343 366788999999999964 2355565 577799
Q ss_pred eecccccccCC-------CCcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceeEcccccc
Q 016552 276 DDMREGMVRGW-------RGPVAAMDEEVLYGIDENS----------------------CTLSRYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 276 ~~~~~~~~~~~-------~~~~~~~~~~~ly~~~~~~----------------------~~l~~yd~~~~~W~~v~~~~~ 326 (387)
++++. ++..+ .++.+++.+++||++||.. ..+.+||+++++|+.+..+|.
T Consensus 232 ~~~~~-m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 232 NKLPP-LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred eecCC-CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 99987 44432 2334667899999999842 146789999999999999988
Q ss_pred ccCceEEEEeCCeEEEEecCC
Q 016552 327 LKGARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 327 ~~~~~~~~~~~g~i~v~gg~~ 347 (387)
.+..+++++++|+|||+||..
T Consensus 311 ~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 311 GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred CceeeEEEEcCCEEEEEeccC
Confidence 777777888999999999863
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=5.6e-29 Score=237.26 Aligned_cols=247 Identities=16% Similarity=0.209 Sum_probs=183.9
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCC--CCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC--
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPV--SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF-- 159 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-- 159 (387)
.+|++++. ....+++||+. +++|..++++|..| |.++.+++++++||++||.....
T Consensus 40 ~iyv~gG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------r~~~~~v~~~~~IYV~GG~~~~~~~ 99 (376)
T PRK14131 40 TVYVGLGS------AGTSWYKLDLNAPSKGWTKIAAFPGGP--------------REQAVAAFIDGKLYVFGGIGKTNSE 99 (376)
T ss_pred EEEEEeCC------CCCeEEEEECCCCCCCeEECCcCCCCC--------------cccceEEEECCEEEEEcCCCCCCCC
Confidence 57877653 12347888876 47899999887522 45678899999999999975311
Q ss_pred --CCCCCccEEEeccCCceeeCCC-CCCCCcceeEEE-eCCEEEEEecCCCC-CC-------------------------
Q 016552 160 --NPALTRPLIFDPICRTWTFGPE-LVTPRRWCAAGC-SRGAVYVASGIGSQ-FS------------------------- 209 (387)
Q Consensus 160 --~~~~~~~~vyd~~t~~W~~l~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~-~~------------------------- 209 (387)
....+++++||+.+++|+++++ +|.++..+++++ .+++||++||.... ++
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 1235789999999999999986 356666666665 79999999997531 00
Q ss_pred -----CCCcceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECCEEEEEeeeC------CeE--EEEECCCCce
Q 016552 210 -----SDVAKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGKLCLVNVKG------AEG--AVYDVVANTW 275 (387)
Q Consensus 210 -----~~~~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg~~------~~i--~~yD~~~~~W 275 (387)
....+.+++||+.+++ |..++++|. ++. .++++.++++||++||.. ..+ ..||+++++|
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~----W~~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W 252 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQ----WKNAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKW 252 (376)
T ss_pred CChhhcCcCceEEEEECCCCe----eeECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcce
Confidence 0024689999999999 999999985 333 366788899999999853 223 3467889999
Q ss_pred eecccccccCCC--------CcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceeEccccc
Q 016552 276 DDMREGMVRGWR--------GPVAAMDEEVLYGIDENS----------------------CTLSRYDEVMDDWKEVVKSD 325 (387)
Q Consensus 276 ~~~~~~~~~~~~--------~~~~~~~~~~ly~~~~~~----------------------~~l~~yd~~~~~W~~v~~~~ 325 (387)
++++. ++..+. +..+++.+++||++||.. ..+.+||+++++|+.+..+|
T Consensus 253 ~~~~~-~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 253 QKLPD-LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred eecCC-CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 99986 443321 222567789999999842 02467999999999999988
Q ss_pred cccCceEEEEeCCeEEEEecCC------CeEEEEeccCC
Q 016552 326 LLKGARHAAAGGGRVCAVCENG------GGIVVVDVKAA 358 (387)
Q Consensus 326 ~~~~~~~~~~~~g~i~v~gg~~------~~i~~~d~~~~ 358 (387)
..+..+.+++++|+|||+||.. +++++|++..+
T Consensus 332 ~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 332 QGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred CCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 8887778899999999999852 46777877755
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.6e-29 Score=246.21 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=167.9
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|+.++.. .......++.|||.+++|..+++|+.+ |..+++++.+++||++||... .
T Consensus 273 ~lyviGG~~--~~~~~~~v~~Ydp~~~~W~~~~~m~~~---------------r~~~~~v~~~~~iYviGG~~~-----~ 330 (480)
T PHA02790 273 VVYLIGGWM--NNEIHNNAIAVNYISNNWIPIPPMNSP---------------RLYASGVPANNKLYVVGGLPN-----P 330 (480)
T ss_pred EEEEEcCCC--CCCcCCeEEEEECCCCEEEECCCCCch---------------hhcceEEEECCEEEEECCcCC-----C
Confidence 366766531 111223478899999999999999863 444778899999999999642 2
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..+.+|||.+++|..+++||.+|..+++++.+|+|||+||.+. ..+.+++||+.+++ |+.+++|+.++..
T Consensus 331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~----W~~~~~m~~~r~~- 400 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQ----WQFGPSTYYPHYK- 400 (480)
T ss_pred CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCE----EEeCCCCCCcccc-
Confidence 5689999999999999999999999999999999999999754 13578999999999 9999999987754
Q ss_pred cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCce
Q 016552 244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W 318 (387)
+.+++++|+||++|| ..++||+++++|+.+++ ++..+..+++++.+|+||++||.+ ..+.+||+++++|
T Consensus 401 --~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 401 --SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred --ceEEEECCEEEEECC---ceEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 678899999999998 47999999999999987 777788888999999999999843 3589999999999
Q ss_pred eEcc
Q 016552 319 KEVV 322 (387)
Q Consensus 319 ~~v~ 322 (387)
+...
T Consensus 475 ~~~~ 478 (480)
T PHA02790 475 NIWD 478 (480)
T ss_pred EecC
Confidence 8653
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.6e-28 Score=232.28 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=165.5
Q ss_pred eEEEEECCEEEEEecccCCCCCCCCccEEEec--cCCceeeCCCCC-CCCcceeEEEeCCEEEEEecCCCCC---CCCCc
Q 016552 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDP--ICRTWTFGPELV-TPRRWCAAGCSRGAVYVASGIGSQF---SSDVA 213 (387)
Q Consensus 140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~--~t~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~ 213 (387)
..+++++++|||+||... +.+++||+ .+++|+++++|| .+|..+++++++++|||+||..... ....+
T Consensus 11 ~~~~~~~~~vyv~GG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAG------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred ceEEEECCEEEEEccccC------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceec
Confidence 457788999999999522 56899996 678999999999 5899999999999999999985421 01246
Q ss_pred ceEEEEECCCCccccCeEEcC-CCCCCCccccceEEE-EECCEEEEEeeeC-----------------------------
Q 016552 214 KSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAV-GWKGKLCLVNVKG----------------------------- 262 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~-~~~g~lyv~gg~~----------------------------- 262 (387)
+++++||+.+++ |+.++ ++|..+.. +.++ +++|+||++||..
T Consensus 85 ~~v~~Yd~~~~~----W~~~~~~~p~~~~~---~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 85 DDVYRYDPKKNS----WQKLDTRSPVGLLG---ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred ccEEEEECCCCE----EecCCCCCCCcccc---eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 789999999999 99997 45544432 4444 6899999999863
Q ss_pred ----------CeEEEEECCCCceeeccccccc-CCCCcEEEEeCCeEEEEeCCC------CeEEEEe--CCCCceeEccc
Q 016552 263 ----------AEGAVYDVVANTWDDMREGMVR-GWRGPVAAMDEEVLYGIDENS------CTLSRYD--EVMDDWKEVVK 323 (387)
Q Consensus 263 ----------~~i~~yD~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ly~~~~~~------~~l~~yd--~~~~~W~~v~~ 323 (387)
+.+++||+.+++|+.++. ++. .+.++++++.+++||++||.. ..++.|| +++++|.++..
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 468999999999999987 554 566778888899999999842 2355554 57789999998
Q ss_pred ccccc-------CceEEEEeCCeEEEEecCC----------------------CeEEEEeccCCCCCCceEE--eCCCC
Q 016552 324 SDLLK-------GARHAAAGGGRVCAVCENG----------------------GGIVVVDVKAAAAPTIFVV--DTPLG 371 (387)
Q Consensus 324 ~~~~~-------~~~~~~~~~g~i~v~gg~~----------------------~~i~~~d~~~~~~~~~W~~--~~p~~ 371 (387)
++..+ ..+.+++++|+||++||.. ..+.+||+.+. +|+. .+|..
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~----~W~~~~~lp~~ 311 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG----KWSKVGKLPQG 311 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC----cccccCCCCCC
Confidence 86533 1344678999999999842 14678999977 8995 66654
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=8.4e-29 Score=247.35 Aligned_cols=237 Identities=15% Similarity=0.269 Sum_probs=188.1
Q ss_pred hhHhhhhhhcCCC-C--Cce---eeEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccc
Q 016552 66 VCHSWRRLIYSPS-F--PPF---LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLP 139 (387)
Q Consensus 66 VcK~W~~li~~~~-f--~~~---~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~ 139 (387)
..++|..+...+. . ... ..+|++++... .......++.||+.+++|..+++++.+ |.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~---------------R~~ 335 (534)
T PHA03098 272 PLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK-NNLSVNSVVSYDTKTKSWNKVPELIYP---------------RKN 335 (534)
T ss_pred hhhhcccccCccccccceEEEECCEEEEECCCcC-CCCeeccEEEEeCCCCeeeECCCCCcc---------------ccc
Confidence 3566776654431 1 111 25777776310 011123588999999999999988762 556
Q ss_pred eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 219 (387)
+++++.+++||++||... ....+++++||+.+++|+.+++||.+|..+++++.+++|||+||... +...++++++|
T Consensus 336 ~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~y 411 (534)
T PHA03098 336 PGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVECF 411 (534)
T ss_pred ceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC--CCcccceEEEE
Confidence 889999999999999764 34567899999999999999999999999999999999999999754 23346789999
Q ss_pred ECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC--------CeEEEEECCCCceeecccccccCCCCcEE
Q 016552 220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
|+.+++ |..++++|.++.. +++++++++||++||.. ..+++||+++++|+.++. ++.++..+++
T Consensus 412 d~~t~~----W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~ 483 (534)
T PHA03098 412 SLNTNK----WSKGSPLPISHYG---GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASL 483 (534)
T ss_pred eCCCCe----eeecCCCCccccC---ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceE
Confidence 999999 9999999977654 77889999999999864 348999999999999986 5666667777
Q ss_pred EEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccccccCc
Q 016552 292 AMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 292 ~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
++.+++||++||.. ..+++||+++++|..+..+|...+.
T Consensus 484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence 88899999999853 4699999999999999887765543
No 17
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=7.9e-29 Score=211.01 Aligned_cols=255 Identities=14% Similarity=0.199 Sum_probs=200.8
Q ss_pred eEEeecCCC--C-CCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCC
Q 016552 84 SLYALFSPK--S-NSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFN 160 (387)
Q Consensus 84 ~l~~~~~~~--~-~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~ 160 (387)
++|.+++-= + -.....+.++++|..+-+|.++|+--....+. ...|.....|+|+..+.+.+++|+.||.+.. .
T Consensus 25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~--~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~-e 101 (392)
T KOG4693|consen 25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIE--SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDD-E 101 (392)
T ss_pred eEEecCCcccccccccCCcceeEEeeccceeEEecCccccccccc--CCCCccchhhcCceEEEEcceEEEEcCccCc-c
Confidence 467766521 0 02235678999999999999988721110000 0112334569999999999999999997653 4
Q ss_pred CCCCccEEEeccCCceeeCC---CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552 161 PALTRPLIFDPICRTWTFGP---ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 161 ~~~~~~~vyd~~t~~W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p 237 (387)
..++-++.|||.|++|.+.. -+|..|..|++++.++.+|++||+... .+...+++.++|..|-+ |+.+....
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt----Wr~~~Tkg 176 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT----WREMHTKG 176 (392)
T ss_pred cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee----eeehhccC
Confidence 56788899999999999842 468899999999999999999998653 12455689999999999 99997665
Q ss_pred CCCccccceEEEEECCEEEEEeeeC--------------CeEEEEECCCCceeeccc--ccccCCCCcEEEEeCCeEEEE
Q 016552 238 DGRFSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGI 301 (387)
Q Consensus 238 ~~~~~~~~~~~~~~~g~lyv~gg~~--------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~~ 301 (387)
.+..-|+.++++++++.+|++||++ +.|.++|+.|+.|...+. ..|.+++.+++.+.+++||++
T Consensus 177 ~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F 256 (392)
T KOG4693|consen 177 DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF 256 (392)
T ss_pred CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEe
Confidence 5444467788999999999999965 788999999999987763 357788899999999999999
Q ss_pred eCCC-------CeEEEEeCCCCceeEcccc---ccccCceEEEEeCCeEEEEecC
Q 016552 302 DENS-------CTLSRYDEVMDDWKEVVKS---DLLKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 302 ~~~~-------~~l~~yd~~~~~W~~v~~~---~~~~~~~~~~~~~g~i~v~gg~ 346 (387)
||.. .++++|||.+..|..|..- |..+...|++..++++|+|||.
T Consensus 257 GGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 257 GGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 9854 3699999999999998753 5677788899999999999983
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=6.2e-28 Score=225.90 Aligned_cols=216 Identities=14% Similarity=0.131 Sum_probs=170.0
Q ss_pred ccceEEEEECCEEEEEecccCCCC--------CCCCccEEEe-ccC-CceeeCCCCCCCCcceeEEEeCCEEEEEecCCC
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFN--------PALTRPLIFD-PIC-RTWTFGPELVTPRRWCAAGCSRGAVYVASGIGS 206 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~--------~~~~~~~vyd-~~t-~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~ 206 (387)
..++.++++++.|||+||...... ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||.+.
T Consensus 4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~ 83 (323)
T TIGR03548 4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS 83 (323)
T ss_pred eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence 345778889999999999765321 1235678885 432 379999999999988888889999999999865
Q ss_pred CCCCCCcceEEEEECCCCccccCe----EEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceee
Q 016552 207 QFSSDVAKSVEKWDLMNGEKNSRW----EKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD 277 (387)
Q Consensus 207 ~~~~~~~~~v~~yd~~~~~~~~~W----~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~ 277 (387)
...+++++.||+.+++ | ..+++||.++.. +++++++++||++||.. +++++||+.+++|++
T Consensus 84 ---~~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~~---~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 84 ---SERFSSVYRITLDESK----EELICETIGNLPFTFEN---GSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred ---CCCceeEEEEEEcCCc----eeeeeeEcCCCCcCccC---ceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 2346789999999998 7 788899877643 77889999999999962 789999999999999
Q ss_pred cccccccCCCCcEEEEeCCeEEEEeCCCC----eEEEEeCCCCceeEccccc-----ccc-CceEEEEeCCeEEEEecCC
Q 016552 278 MREGMVRGWRGPVAAMDEEVLYGIDENSC----TLSRYDEVMDDWKEVVKSD-----LLK-GARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~----~l~~yd~~~~~W~~v~~~~-----~~~-~~~~~~~~~g~i~v~gg~~ 347 (387)
++..+...+..+++++.+++||++||.++ ++++||+++++|+.+..++ ..+ ..+.++..+++||++||..
T Consensus 154 ~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 154 LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 98633345566777788999999998542 4789999999999998653 112 2343455679999999853
Q ss_pred -------------------------------------CeEEEEeccCCCCCCceEE
Q 016552 348 -------------------------------------GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 348 -------------------------------------~~i~~~d~~~~~~~~~W~~ 366 (387)
..+++||+.++ +|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~ 285 (323)
T TIGR03548 234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG----KWKS 285 (323)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC----eeeE
Confidence 46999999988 8996
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=1.8e-26 Score=219.99 Aligned_cols=227 Identities=19% Similarity=0.209 Sum_probs=170.4
Q ss_pred CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEecc--CCceeeCCCCC-CCCc
Q 016552 111 TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRR 187 (387)
Q Consensus 111 ~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~--t~~W~~l~~~p-~~r~ 187 (387)
.+..+++||.+ +..+++++++++||++||... ..+++||+. +++|..+++|| .+|.
T Consensus 18 ~~~~l~~lP~~---------------~~~~~~~~~~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~r~ 76 (376)
T PRK14131 18 NAEQLPDLPVP---------------FKNGTGAIDNNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAAFPGGPRE 76 (376)
T ss_pred ecccCCCCCcC---------------ccCCeEEEECCEEEEEeCCCC------CeEEEEECCCCCCCeEECCcCCCCCcc
Confidence 45677888762 222467788999999999532 347899986 47999999998 5898
Q ss_pred ceeEEEeCCEEEEEecCCCC-CC--CCCcceEEEEECCCCccccCeEEcCC-CCCCCccccceEEEE-ECCEEEEEeeeC
Q 016552 188 WCAAGCSRGAVYVASGIGSQ-FS--SDVAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVG-WKGKLCLVNVKG 262 (387)
Q Consensus 188 ~~~~~~~~~~iyv~GG~~~~-~~--~~~~~~v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~-~~g~lyv~gg~~ 262 (387)
.+++++.+++|||+||.... .. ...++++++||+.+++ |..+++ +|..+. .+.+++ .+++||++||..
T Consensus 77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~----W~~~~~~~p~~~~---~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS----WQKLDTRSPVGLA---GHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE----EEeCCCCCCCccc---ceEEEEeeCCEEEEECCCC
Confidence 89999999999999998641 11 1246789999999999 999985 344432 255555 899999999953
Q ss_pred ---------------------------------------CeEEEEECCCCceeeccccccc-CCCCcEEEEeCCeEEEEe
Q 016552 263 ---------------------------------------AEGAVYDVVANTWDDMREGMVR-GWRGPVAAMDEEVLYGID 302 (387)
Q Consensus 263 ---------------------------------------~~i~~yD~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ly~~~ 302 (387)
+.+++||+.+++|+.++. ++. .+.++++++.+++||++|
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEe
Confidence 368999999999999987 453 566778888899999999
Q ss_pred CCC------CeE--EEEeCCCCceeEccccccccC--------ceEEEEeCCeEEEEecCC-------------------
Q 016552 303 ENS------CTL--SRYDEVMDDWKEVVKSDLLKG--------ARHAAAGGGRVCAVCENG------------------- 347 (387)
Q Consensus 303 ~~~------~~l--~~yd~~~~~W~~v~~~~~~~~--------~~~~~~~~g~i~v~gg~~------------------- 347 (387)
|.. ..+ +.||+++++|..+..+|..+. .+.++.++++|||+||.+
T Consensus 229 G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T PRK14131 229 GEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGL 308 (376)
T ss_pred eeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCC
Confidence 842 123 456889999999998865432 123567899999999842
Q ss_pred ---CeEEEEeccCCCCCCceEE--eCCC
Q 016552 348 ---GGIVVVDVKAAAAPTIFVV--DTPL 370 (387)
Q Consensus 348 ---~~i~~~d~~~~~~~~~W~~--~~p~ 370 (387)
..+.+||+.+. +|+. .+|.
T Consensus 309 ~~~~~~e~yd~~~~----~W~~~~~lp~ 332 (376)
T PRK14131 309 KKSWSDEIYALVNG----KWQKVGELPQ 332 (376)
T ss_pred cceeehheEEecCC----cccccCcCCC
Confidence 12467999987 8985 5554
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=194.32 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=179.2
Q ss_pred ccceEEEEECCEEEEEecccCCC---CCCCCccEEEeccCCceeeCCC-------------CCCCCcceeEEEeCCEEEE
Q 016552 137 NLPVQLVSLSGKLILLAATTHNF---NPALTRPLIFDPICRTWTFGPE-------------LVTPRRWCAAGCSRGAVYV 200 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~---~~~~~~~~vyd~~t~~W~~l~~-------------~p~~r~~~~~~~~~~~iyv 200 (387)
|..+++++++..+|-+||++.+. ....-+|+++|..+-+|.++|| .|.-|+.|+.+.+++++|+
T Consensus 14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv 93 (392)
T KOG4693|consen 14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV 93 (392)
T ss_pred cccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence 55689999999999999988643 2234468999999999999887 2445889999999999999
Q ss_pred EecCCCCCCCCCcceEEEEECCCCccccCeEEcC---CCCCCCccccceEEEEECCEEEEEeeeC-------CeEEEEEC
Q 016552 201 ASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG---ELKDGRFSREAIDAVGWKGKLCLVNVKG-------AEGAVYDV 270 (387)
Q Consensus 201 ~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~g~lyv~gg~~-------~~i~~yD~ 270 (387)
.||.++ +....+.+..||++++. |.+.. -+| -.|+.+++++.++.+|++||+. .++.++|.
T Consensus 94 WGGRND--~egaCN~Ly~fDp~t~~----W~~p~v~G~vP---gaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~ 164 (392)
T KOG4693|consen 94 WGGRND--DEGACNLLYEFDPETNV----WKKPEVEGFVP---GARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDF 164 (392)
T ss_pred EcCccC--cccccceeeeecccccc----ccccceeeecC---CccCCceeeEECcEEEEecChHHHHHhhhccceeEec
Confidence 999987 45677889999999999 99764 345 3456699999999999999975 88999999
Q ss_pred CCCceeeccc-ccccCCC-CcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceeEcccc---ccccCce
Q 016552 271 VANTWDDMRE-GMVRGWR-GPVAAMDEEVLYGIDENS--------------CTLSRYDEVMDDWKEVVKS---DLLKGAR 331 (387)
Q Consensus 271 ~~~~W~~~~~-~~~~~~~-~~~~~~~~~~ly~~~~~~--------------~~l~~yd~~~~~W~~v~~~---~~~~~~~ 331 (387)
.|.+|+++.. +.|..|+ .+++++.++++|++||.+ .+|.++|++|+.|..-... |.-+..+
T Consensus 165 ~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH 244 (392)
T KOG4693|consen 165 ATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH 244 (392)
T ss_pred cceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc
Confidence 9999999873 2344444 677778889999999732 2589999999999987543 3345678
Q ss_pred EEEEeCCeEEEEecCC-------CeEEEEeccCCCCCCceEEeCC
Q 016552 332 HAAAGGGRVCAVCENG-------GGIVVVDVKAAAAPTIFVVDTP 369 (387)
Q Consensus 332 ~~~~~~g~i~v~gg~~-------~~i~~~d~~~~~~~~~W~~~~p 369 (387)
.+..++|++|+|||.+ ++++.||+.+. .|.++.+
T Consensus 245 S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~----~W~~I~~ 285 (392)
T KOG4693|consen 245 STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS----MWSVISV 285 (392)
T ss_pred ceEEEcceEEEecccchhhhhhhcceeecccccc----hheeeec
Confidence 8999999999999863 68999999988 9997444
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.88 E-value=8.6e-21 Score=185.33 Aligned_cols=220 Identities=14% Similarity=0.168 Sum_probs=178.9
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC---CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCc
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP---ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVA 213 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 213 (387)
|.+|+++.+++++||+||..........+++++|..+..|.... ..|.+|+.+.+++++++||++||.+. ....+
T Consensus 61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~--~~~~~ 138 (482)
T KOG0379|consen 61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK--KYRNL 138 (482)
T ss_pred hhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC--CCCCh
Confidence 77899999999999999976533222226999999999999854 34678999999999999999999986 23347
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECCCCceeeccc--ccccC
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMRE--GMVRG 285 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~~--~~~~~ 285 (387)
+.++.||+.|++ |..+.....+...|..|++++++.+|||+||.+ +++++||+++.+|.++.. ..|.+
T Consensus 139 ~~l~~~d~~t~~----W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 139 NELHSLDLSTRT----WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred hheEeccCCCCc----EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 899999999999 998875444334455699999999999999976 889999999999998863 24567
Q ss_pred CCCcEEEEeCCeEEEEeCCC------CeEEEEeCCCCceeEccc---cccccCceEEEEeCCeEEEEecCC-------Ce
Q 016552 286 WRGPVAAMDEEVLYGIDENS------CTLSRYDEVMDDWKEVVK---SDLLKGARHAAAGGGRVCAVCENG-------GG 349 (387)
Q Consensus 286 ~~~~~~~~~~~~ly~~~~~~------~~l~~yd~~~~~W~~v~~---~~~~~~~~~~~~~~g~i~v~gg~~-------~~ 349 (387)
+.++++++.++++++++|.. ++++.+|+.+.+|.++.. .|..+..+.++..+..++++||+. .+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~ 294 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD 294 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence 78999999999999998754 369999999999997653 356777888889999999999853 35
Q ss_pred EEEEeccCCCCCCceEE
Q 016552 350 IVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 350 i~~~d~~~~~~~~~W~~ 366 (387)
++.+|..+. .|..
T Consensus 295 ~~~l~~~~~----~w~~ 307 (482)
T KOG0379|consen 295 LYGLDLETL----VWSK 307 (482)
T ss_pred ccccccccc----ceee
Confidence 688888866 8885
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.87 E-value=3.6e-20 Score=180.93 Aligned_cols=223 Identities=19% Similarity=0.235 Sum_probs=178.0
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.++++.+...........+++||..+..|.....-...|+ .++++.+++++++||++||... .....
T Consensus 72 ~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~------------~r~g~~~~~~~~~l~lfGG~~~-~~~~~ 138 (482)
T KOG0379|consen 72 KLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPS------------PRYGHSLSAVGDKLYLFGGTDK-KYRNL 138 (482)
T ss_pred EEEEECCCCCCCccccceeEEeecCCcccccccccCCCCC------------cccceeEEEECCeEEEEccccC-CCCCh
Confidence 4677776532222223369999999999987765554432 3888999999999999999875 23457
Q ss_pred CccEEEeccCCceeeCCC---CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552 164 TRPLIFDPICRTWTFGPE---LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~ 240 (387)
.+++.||+.|++|..+.+ +|.+|..|++++++++|||+||.+. ....++++++||+++.+ |.++.......
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~--~~~~~ndl~i~d~~~~~----W~~~~~~g~~P 212 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGG--TGDSLNDLHIYDLETST----WSELDTQGEAP 212 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccC--cccceeeeeeecccccc----ceecccCCCCC
Confidence 899999999999999754 5789999999999999999999977 33478899999999999 99987443333
Q ss_pred ccccceEEEEECCEEEEEeeeC------CeEEEEECCCCceeecc--cccccCCCCcEEEEeCCeEEEEeCCC-------
Q 016552 241 FSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDENS------- 305 (387)
Q Consensus 241 ~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~--~~~~~~~~~~~~~~~~~~ly~~~~~~------- 305 (387)
.+|..|+++++++++++++|.. ++++.+|+.+.+|..+. ...|.++..++.++.+.++++++|..
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l 292 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPL 292 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccc
Confidence 4455599999999999998755 89999999999999665 34677777888888899999999742
Q ss_pred CeEEEEeCCCCceeEccccc
Q 016552 306 CTLSRYDEVMDDWKEVVKSD 325 (387)
Q Consensus 306 ~~l~~yd~~~~~W~~v~~~~ 325 (387)
++++.||.++..|.++....
T Consensus 293 ~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 293 GDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccceeeeeccc
Confidence 35788999999999988655
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.83 E-value=2e-19 Score=162.29 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=154.4
Q ss_pred EEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEEC-CEEEEEecccCCC----CCCCCccEEEeccCCce
Q 016552 102 LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLS-GKLILLAATTHNF----NPALTRPLIFDPICRTW 176 (387)
Q Consensus 102 ~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~----~~~~~~~~vyd~~t~~W 176 (387)
+|.||..++.|..+.....+|+ |.+|++|++. |.||++||...+. .-...++|+||..|++|
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~p-------------Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPPP-------------RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred eeEEeccccceeEeccCCCcCC-------------CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence 7789999999998865544322 5567777764 8999999965422 12356889999999999
Q ss_pred eeCC--CCCCCCcceeEEEeCCEEEEEecCCCC-CCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-C
Q 016552 177 TFGP--ELVTPRRWCAAGCSRGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-K 252 (387)
Q Consensus 177 ~~l~--~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~ 252 (387)
.++. --|.+|++|.+++...+|+++||.... .+....+++++||+.+-+ |.++.+-.....+|..|+..+. +
T Consensus 167 eql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk----W~Klepsga~PtpRSGcq~~vtpq 242 (521)
T KOG1230|consen 167 EQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK----WSKLEPSGAGPTPRSGCQFSVTPQ 242 (521)
T ss_pred eeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee----eeeccCCCCCCCCCCcceEEecCC
Confidence 9975 457899999999999999999998653 233567899999999999 9999863222244555777777 9
Q ss_pred CEEEEEeeeC--------------CeEEEEECCC-----Cceeeccc--ccccCCCCcEEEEe-CCeEEEEeCC------
Q 016552 253 GKLCLVNVKG--------------AEGAVYDVVA-----NTWDDMRE--GMVRGWRGPVAAMD-EEVLYGIDEN------ 304 (387)
Q Consensus 253 g~lyv~gg~~--------------~~i~~yD~~~-----~~W~~~~~--~~~~~~~~~~~~~~-~~~ly~~~~~------ 304 (387)
|.||+.||+. .+++..+++. -.|..+.+ ..|.++.+.++++. +++-|++||-
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEE 322 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccccc
Confidence 9999999986 7788899987 46777753 23556667676665 4477888761
Q ss_pred --------CCeEEEEeCCCCceeEcc
Q 016552 305 --------SCTLSRYDEVMDDWKEVV 322 (387)
Q Consensus 305 --------~~~l~~yd~~~~~W~~v~ 322 (387)
.++|+.||...+.|.+.+
T Consensus 323 eEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 323 EESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred chhhhhhhhhhhhheecccchhhHhh
Confidence 136999999999998754
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=8.9e-19 Score=161.83 Aligned_cols=272 Identities=15% Similarity=0.172 Sum_probs=188.1
Q ss_pred hhhhhhcCCCCCc----------eeeEEeecCCCCCCCCCCeE-EEEEeCCCCCeecCCCCCCCCcccccccCCCccccc
Q 016552 69 SWRRLIYSPSFPP----------FLSLYALFSPKSNSSSTPIH-LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRN 137 (387)
Q Consensus 69 ~W~~li~~~~f~~----------~~~l~~~~~~~~~~~~~~~~-~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~ 137 (387)
+||++..+..-.+ ...|.+.++. ...+-++ +++||..++.|.--.--..-|+ ..
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGG---GNEGiiDELHvYNTatnqWf~PavrGDiPp------------gc 82 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGG---GNEGIIDELHVYNTATNQWFAPAVRGDIPP------------GC 82 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecC---CcccchhhhhhhccccceeecchhcCCCCC------------ch
Confidence 7888876532211 1345554442 2223333 8999999999973221111111 13
Q ss_pred cceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC-------CCCCCcceeEEEeCCEEEEEecCCCC-CC
Q 016552 138 LPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE-------LVTPRRWCAAGCSRGAVYVASGIGSQ-FS 209 (387)
Q Consensus 138 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~-~~ 209 (387)
..|.+++.+.+||+|||.... ....+++|.+-...=.|+++.+ .|.||..|+...+++|-|+|||..+. .+
T Consensus 83 AA~GfvcdGtrilvFGGMvEY-GkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 83 AAFGFVCDGTRILVFGGMVEY-GKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred hhcceEecCceEEEEccEeee-ccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 447788899999999996543 3456666655555557788643 56799999999999999999998553 11
Q ss_pred -----CCCcceEEEEECCCCccccCeEEc---CCCCCCCccccceEEEEE------CCEEEEEeeeC----CeEEEEECC
Q 016552 210 -----SDVAKSVEKWDLMNGEKNSRWEKT---GELKDGRFSREAIDAVGW------KGKLCLVNVKG----AEGAVYDVV 271 (387)
Q Consensus 210 -----~~~~~~v~~yd~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~------~g~lyv~gg~~----~~i~~yD~~ 271 (387)
...++++.+.++..+..--.|+.. ..+|.+|.+ |.++.+ ..++|+.||.. .+++..|++
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES---HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES---HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD 238 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc---ceeEEEEeccCCcceEEEEcccccccccceeEEecc
Confidence 145777777777644433338754 356656544 888877 24699999865 899999999
Q ss_pred CCceeecc--cccccCCCCcEEEEeCCeEEEEeCC-------------------CCeEEEEeCCCCceeEccc-------
Q 016552 272 ANTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDEN-------------------SCTLSRYDEVMDDWKEVVK------- 323 (387)
Q Consensus 272 ~~~W~~~~--~~~~~~~~~~~~~~~~~~ly~~~~~-------------------~~~l~~yd~~~~~W~~v~~------- 323 (387)
+.+|.+.. ...|..+.-+++.+.|+++|++||. ...+-++|.++..|+.+..
T Consensus 239 Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~t 318 (830)
T KOG4152|consen 239 TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNT 318 (830)
T ss_pred eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccc
Confidence 99999875 2345566678888899999999971 1347889999999998752
Q ss_pred cccccCceEEEEeCCeEEEEecCC------------CeEEEEeccCCC
Q 016552 324 SDLLKGARHAAAGGGRVCAVCENG------------GGIVVVDVKAAA 359 (387)
Q Consensus 324 ~~~~~~~~~~~~~~g~i~v~gg~~------------~~i~~~d~~~~~ 359 (387)
.|+.|..+|+++++.++|+-.|.. .++|.+|...-+
T Consensus 319 iPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 319 IPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred cccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 356777899999999999998752 256777777443
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.80 E-value=2.9e-18 Score=154.88 Aligned_cols=210 Identities=15% Similarity=0.127 Sum_probs=157.9
Q ss_pred CEEEEEecccCCC--CCCCCccEEEeccCCceeeC--CCCCCCCcceeEEEeC-CEEEEEecCCCCCCC---CCcceEEE
Q 016552 147 GKLILLAATTHNF--NPALTRPLIFDPICRTWTFG--PELVTPRRWCAAGCSR-GAVYVASGIGSQFSS---DVAKSVEK 218 (387)
Q Consensus 147 ~~l~v~GG~~~~~--~~~~~~~~vyd~~t~~W~~l--~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~---~~~~~v~~ 218 (387)
+.|+++||..... .-..+++|+||..+++|+.+ |..|.||+.|.++++. |.+|++||.-...++ .--.++|.
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~ 158 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWL 158 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheee
Confidence 4789999854322 22457899999999999995 5667899888877775 789999997543222 12347899
Q ss_pred EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---------CeEEEEECCCCceeeccccc--ccCCC
Q 016552 219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGM--VRGWR 287 (387)
Q Consensus 219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~--~~~~~ 287 (387)
||..+++ |+++..-. ...+|..|-+++...+|+++||+- +++++||+.+-+|+++.+.- |.++.
T Consensus 159 fd~~trk----weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRS 233 (521)
T KOG1230|consen 159 FDLKTRK----WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRS 233 (521)
T ss_pred eeeccch----heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCC
Confidence 9999999 99987322 224456699999999999999964 89999999999999997533 66677
Q ss_pred CcEEEEe-CCeEEEEeCCC--------------CeEEEEeCCC-----CceeEcccc---ccccCceEE-EEeCCeEEEE
Q 016552 288 GPVAAMD-EEVLYGIDENS--------------CTLSRYDEVM-----DDWKEVVKS---DLLKGARHA-AAGGGRVCAV 343 (387)
Q Consensus 288 ~~~~~~~-~~~ly~~~~~~--------------~~l~~yd~~~-----~~W~~v~~~---~~~~~~~~~-~~~~g~i~v~ 343 (387)
+++..+. .|.||++||.+ .+++..+++. -.|..+.+. |.+|..+.+ ++-+++-++|
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~F 313 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFF 313 (521)
T ss_pred cceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEe
Confidence 8877776 88999999732 2478888887 578887643 445555444 4556799999
Q ss_pred ecC--------------CCeEEEEeccCCCCCCceE
Q 016552 344 CEN--------------GGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 344 gg~--------------~~~i~~~d~~~~~~~~~W~ 365 (387)
||- .++++.||...+ .|.
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~n----rW~ 345 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTRN----RWS 345 (521)
T ss_pred cceecccccchhhhhhhhhhhhheecccc----hhh
Confidence 982 368999999977 776
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.71 E-value=3.3e-16 Score=145.01 Aligned_cols=217 Identities=9% Similarity=0.108 Sum_probs=158.1
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceee---CCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCc
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF---GPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVA 213 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~---l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 213 (387)
|.||.++++..-+++|||.+ +.-.+++++||..||+|.. ..+.|.+-..+..+..+.+||||||..+ .+...
T Consensus 33 RHGHRAVaikELiviFGGGN---EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvE--YGkYs 107 (830)
T KOG4152|consen 33 RHGHRAVAIKELIVIFGGGN---EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVE--YGKYS 107 (830)
T ss_pred cccchheeeeeeEEEecCCc---ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEee--ecccc
Confidence 77899999999999999954 3567889999999999976 2356666667777788899999999865 23333
Q ss_pred ceEEEEECCCCccccCeEEcCCCCC----CCccccceEEEEECCEEEEEeeeC--------------CeEEEEECCCC--
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKD----GRFSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVAN-- 273 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~----~~~~~~~~~~~~~~g~lyv~gg~~--------------~~i~~yD~~~~-- 273 (387)
+ +.|.+.... |.|..+.+-+. +...|-.|+...+++|-|+|||-. +++++.++..+
T Consensus 108 N--dLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsg 183 (830)
T KOG4152|consen 108 N--DLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSG 183 (830)
T ss_pred c--hHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCc
Confidence 3 346666555 33777753221 123344588889999999999843 67777777644
Q ss_pred --ceeecc--cccccCCCCcEEEEe------CCeEEEEeCCC----CeEEEEeCCCCceeEccc---cccccCceEEEEe
Q 016552 274 --TWDDMR--EGMVRGWRGPVAAMD------EEVLYGIDENS----CTLSRYDEVMDDWKEVVK---SDLLKGARHAAAG 336 (387)
Q Consensus 274 --~W~~~~--~~~~~~~~~~~~~~~------~~~ly~~~~~~----~~l~~yd~~~~~W~~v~~---~~~~~~~~~~~~~ 336 (387)
.|...- ...|..+..+.+++. ..++|++||-+ +++|-.|.++-.|.+... .|.+|..+.++.+
T Consensus 184 vv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I 263 (830)
T KOG4152|consen 184 VVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI 263 (830)
T ss_pred eEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee
Confidence 587543 224556667777754 33799999843 579999999999998763 3556777888999
Q ss_pred CCeEEEEecC-------------------CCeEEEEeccCCCCCCceEE
Q 016552 337 GGRVCAVCEN-------------------GGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 337 ~g~i~v~gg~-------------------~~~i~~~d~~~~~~~~~W~~ 366 (387)
++++|||||- .+.+-.+++++. .|+.
T Consensus 264 GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~----~W~t 308 (830)
T KOG4152|consen 264 GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM----AWET 308 (830)
T ss_pred cceeEEecceeeeeccccccccccceeeeccceeeeeecch----heee
Confidence 9999999982 245677888876 8883
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=1.9e-14 Score=128.65 Aligned_cols=235 Identities=15% Similarity=0.165 Sum_probs=161.2
Q ss_pred eEEeecCCCCCCCCCCeEEEEEeCCC--CCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC--
Q 016552 84 SLYALFSPKSNSSSTPIHLFTFDPVS--STWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF-- 159 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~--~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-- 159 (387)
.+|+-++. ....||.+|... ..|++++.+|..+ |.+...++++++||++||.....
T Consensus 48 ~~YVGLGs------~G~afy~ldL~~~~k~W~~~a~FpG~~--------------rnqa~~a~~~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 48 TVYVGLGS------AGTAFYVLDLKKPGKGWTKIADFPGGA--------------RNQAVAAVIGGKLYVFGGYGKSVSS 107 (381)
T ss_pred eEEEEecc------CCccceehhhhcCCCCceEcccCCCcc--------------cccchheeeCCeEEEeeccccCCCC
Confidence 57776653 455688888765 6899999998842 55677889999999999975432
Q ss_pred -CCCCCccEEEeccCCceeeCCCC-CCCCcceeEEEeCC-EEEEEecCCCC-C---------------------------
Q 016552 160 -NPALTRPLIFDPICRTWTFGPEL-VTPRRWCAAGCSRG-AVYVASGIGSQ-F--------------------------- 208 (387)
Q Consensus 160 -~~~~~~~~vyd~~t~~W~~l~~~-p~~r~~~~~~~~~~-~iyv~GG~~~~-~--------------------------- 208 (387)
-...+++|+|||.+|+|.++... |..-..+.++..++ +||++||.+.. +
T Consensus 108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 23467889999999999998643 33345677777777 99999998532 1
Q ss_pred ---CCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECC--CCceee
Q 016552 209 ---SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVV--ANTWDD 277 (387)
Q Consensus 209 ---~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~--~~~W~~ 277 (387)
+-.....+..|||.+++ |+.+...|.-..+ ....+.-++++.++.|+- ..+..+|.. ..+|..
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~----W~~~G~~pf~~~a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQ----WRNLGENPFYGNA--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred CHHHhcccccccccccccch----hhhcCcCcccCcc--CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 00123467899999999 9999877743222 122333466788887753 445566665 448998
Q ss_pred cccccccCCC------CcEEEEeCCeEEEEeCC------------------------CCeEEEEeCCCCceeEccccccc
Q 016552 278 MREGMVRGWR------GPVAAMDEEVLYGIDEN------------------------SCTLSRYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 278 ~~~~~~~~~~------~~~~~~~~~~ly~~~~~------------------------~~~l~~yd~~~~~W~~v~~~~~~ 327 (387)
+++.++.... +.-.-..++.+.+.++. ..+|+++| .+.|+.++.+|..
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~ 339 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG 339 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC
Confidence 8753221111 11111335555555541 12577777 8999999999997
Q ss_pred cCceEEEEeCCeEEEEecC
Q 016552 328 KGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 328 ~~~~~~~~~~g~i~v~gg~ 346 (387)
..-.+++..+++|++|||.
T Consensus 340 l~YG~s~~~nn~vl~IGGE 358 (381)
T COG3055 340 LAYGVSLSYNNKVLLIGGE 358 (381)
T ss_pred ccceEEEecCCcEEEEccc
Confidence 7777788899999999985
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=2.2e-13 Score=121.94 Aligned_cols=212 Identities=17% Similarity=0.272 Sum_probs=154.1
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccEEEeccC--CceeeCCCCC-CCCcceeEEEeCCEEEEEecCCCCCC--CCCcce
Q 016552 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPIC--RTWTFGPELV-TPRRWCAAGCSRGAVYVASGIGSQFS--SDVAKS 215 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t--~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~ 215 (387)
+-+.+++.+||--|..+ .+.++.|... +.|++++.+| .+|...++++++++|||+||...... ....++
T Consensus 41 ~Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd 114 (381)
T COG3055 41 AGALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFND 114 (381)
T ss_pred ccceecceEEEEeccCC------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeee
Confidence 34557778999777333 3567777764 6899999998 57889999999999999999866322 345788
Q ss_pred EEEEECCCCccccCeEEcCC-CCCCCccccceEEEEECC-EEEEEeeeC-------------------------------
Q 016552 216 VEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVGWKG-KLCLVNVKG------------------------------- 262 (387)
Q Consensus 216 v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~~g-~lyv~gg~~------------------------------- 262 (387)
+..||+.+|+ |..+.. .|.... .+.++.+++ ++|++||..
T Consensus 115 ~Y~y~p~~ns----W~kl~t~sP~gl~---G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 115 AYRYDPSTNS----WHKLDTRSPTGLV---GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred eEEecCCCCh----hheeccccccccc---cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 9999999999 999874 344433 266777777 899998854
Q ss_pred --------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCC------CCeEEEEeC--CCCceeEcccccc
Q 016552 263 --------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDEN------SCTLSRYDE--VMDDWKEVVKSDL 326 (387)
Q Consensus 263 --------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~------~~~l~~yd~--~~~~W~~v~~~~~ 326 (387)
..+.+|||.+++|+.+...+-.+.++.+++.-++++.++.|+ +..++.++. ..-+|..+.++|.
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 678899999999998886455566677777778888888763 223555555 4568999988765
Q ss_pred ccC-------ceEEEEeCCeEEEEecC------------------------CCeEEEEeccCCCCCCceEE--eCCCC
Q 016552 327 LKG-------ARHAAAGGGRVCAVCEN------------------------GGGIVVVDVKAAAAPTIFVV--DTPLG 371 (387)
Q Consensus 327 ~~~-------~~~~~~~~g~i~v~gg~------------------------~~~i~~~d~~~~~~~~~W~~--~~p~~ 371 (387)
..+ .+-....+|.+.+.||. +.+|+++| ++ .|++ .+|.+
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g----~Wk~~GeLp~~ 339 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG----SWKIVGELPQG 339 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC----ceeeecccCCC
Confidence 432 12233456778888773 14789999 34 8996 66654
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.17 E-value=8.2e-11 Score=77.77 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=43.4
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR 186 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r 186 (387)
|.++++++++++||++||.... ....+++++||+.|++|+++++||.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4568999999999999997664 467889999999999999999999987
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.08 E-value=3.8e-10 Score=74.54 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=44.5
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552 185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~ 240 (387)
||.++++++++++|||+||.... ....+++++||+++++ |+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNT----WEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCc----EEECCCCCCCC
Confidence 68889999999999999999773 4567899999999999 99999999765
No 31
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.08 E-value=1.1e-07 Score=84.54 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=114.8
Q ss_pred CccEEEeccCCceeeCCCCCCCCc---c--eeEEE----eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRR---W--CAAGC----SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG 234 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~---~--~~~~~----~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~ 234 (387)
..++++||.|++|+.+|+.+.++. . .+.+. -+.||..+..... + .....+++|++.+++ |+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~--~-~~~~~~~Vys~~~~~----Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG--N-RNQSEHQVYTLGSNS----WRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC--C-CCCccEEEEEeCCCC----ccccc
Confidence 468999999999999987654311 1 11111 1226665544311 1 123478999999999 99988
Q ss_pred CCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceee-cccccccC--CCCcEEEEeCCeEEEEeCCC-
Q 016552 235 ELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD-MREGMVRG--WRGPVAAMDEEVLYGIDENS- 305 (387)
Q Consensus 235 ~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~-~~~~~~~~--~~~~~~~~~~~~ly~~~~~~- 305 (387)
..+..... . ...+.++|.+|.+.... ..|.+||+.+++|++ ++...... .....++..+|+|.++....
T Consensus 87 ~~~~~~~~-~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 87 CSPPHHPL-K-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred cCCCCccc-c-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC
Confidence 54322111 1 22788999999887543 169999999999995 65311111 11345667789998886432
Q ss_pred -C--eEEEEe-CCCCceeEcccccc-----ccC--ceEEEEeCCeEEEEecC--CCeEEEEeccC
Q 016552 306 -C--TLSRYD-EVMDDWKEVVKSDL-----LKG--ARHAAAGGGRVCAVCEN--GGGIVVVDVKA 357 (387)
Q Consensus 306 -~--~l~~yd-~~~~~W~~v~~~~~-----~~~--~~~~~~~~g~i~v~gg~--~~~i~~~d~~~ 357 (387)
. +||+.+ .+...|++.-..+. ... ....+..+|+|++.... +..+..||+.+
T Consensus 165 ~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 165 TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 2 455554 33567998654431 111 13345677899998664 33389999875
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.88 E-value=2.9e-09 Score=69.28 Aligned_cols=47 Identities=28% Similarity=0.423 Sum_probs=42.1
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552 185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p 237 (387)
||..+++++.+++|||+||... +....+++++||+.+++ |+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~----W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNT----WEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTE----EEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCE----EEEcCCCC
Confidence 5889999999999999999977 45678899999999999 99999886
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.83 E-value=3.6e-09 Score=68.85 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=40.6
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV 183 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p 183 (387)
|.++++++++++||++||... .....+++++||+.+++|+++++||
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 556899999999999999876 3467788999999999999999986
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.78 E-value=1.6e-08 Score=66.36 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=42.0
Q ss_pred CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE
Q 016552 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC 193 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~ 193 (387)
++++||+||.........+++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 578999999874335678999999999999999999999999988875
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.74 E-value=3.3e-08 Score=64.83 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=39.9
Q ss_pred ccceEEEEECCEEEEEecc-cCCCCCCCCccEEEeccCCceeeCCCCC
Q 016552 137 NLPVQLVSLSGKLILLAAT-THNFNPALTRPLIFDPICRTWTFGPELV 183 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~-~~~~~~~~~~~~vyd~~t~~W~~l~~~p 183 (387)
|.++++++.+++||++||. ........+++++||+.|++|+++++|+
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 5679999999999999998 2223566788999999999999999875
No 36
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.74 E-value=2.8e-05 Score=72.62 Aligned_cols=140 Identities=10% Similarity=0.073 Sum_probs=78.1
Q ss_pred CCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccc----ccccC-C-CCcEEEEeCC
Q 016552 223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE----GMVRG-W-RGPVAAMDEE 296 (387)
Q Consensus 223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~----~~~~~-~-~~~~~~~~~~ 296 (387)
.+. |+.+..+. ..+ ...+.++|++|+++..+ .++++|.+-. =.++.. .+..+ + .....+...|
T Consensus 189 ~~~----Wt~l~~~~-~~~----~DIi~~kGkfYAvD~~G-~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~G 257 (373)
T PLN03215 189 GNV----LKALKQMG-YHF----SDIIVHKGQTYALDSIG-IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCG 257 (373)
T ss_pred CCe----eeEccCCC-cee----eEEEEECCEEEEEcCCC-eEEEEecCCc-eeeecceecccccCCcccCceeEEEECC
Confidence 367 99997433 222 45889999999996544 6777774321 111111 01111 1 1233556677
Q ss_pred eEEEEeCC-----------------CC--eEEEEeCCCCceeEccccccc------cCceEEE------EeCCeEEEEec
Q 016552 297 VLYGIDEN-----------------SC--TLSRYDEVMDDWKEVVKSDLL------KGARHAA------AGGGRVCAVCE 345 (387)
Q Consensus 297 ~ly~~~~~-----------------~~--~l~~yd~~~~~W~~v~~~~~~------~~~~~~~------~~~g~i~v~gg 345 (387)
+|+++... .. +|+..|.+..+|.++..+... ...+++. .-+|.||+..
T Consensus 258 dLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd- 336 (373)
T PLN03215 258 ELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE- 336 (373)
T ss_pred EEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC-
Confidence 88888641 01 255668889999999987531 1122222 1246788772
Q ss_pred CCCeEEEEeccCCCCCCceEEeCCCCceeEE
Q 016552 346 NGGGIVVVDVKAAAAPTIFVVDTPLGFEALS 376 (387)
Q Consensus 346 ~~~~i~~~d~~~~~~~~~W~~~~p~~~~~~~ 376 (387)
.....|||+..+ .+....+.+++..+.+.
T Consensus 337 -d~~~~v~~~~dg-~~~~~~~~~~~~~~~~~ 365 (373)
T PLN03215 337 -DTMPKVFKLDNG-NGSSIETTISESSQSSF 365 (373)
T ss_pred -CCcceEEECCCC-CccceEeecCccccchh
Confidence 344568888854 33445555555444433
No 37
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.73 E-value=2.4e-06 Score=75.95 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=115.9
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeC
Q 016552 100 IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG 179 (387)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l 179 (387)
..++++||.|+.|..+|+++..+.. +......+|+....-.-+++.+..... ......+.+|+..+++|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~------~~~~~~~~G~d~~~~~YKVv~~~~~~~--~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSN------KESDTYFLGYDPIEKQYKVLCFSDRSG--NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccc------cccceEEEeecccCCcEEEEEEEeecC--CCCCccEEEEEeCCCCcccc
Confidence 3588999999999999865431100 000000122222222336666654321 12335689999999999998
Q ss_pred CCCCCC-CcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEE-cCCCCCCCc-cccceEEEEECCEEE
Q 016552 180 PELVTP-RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-TGELKDGRF-SREAIDAVGWKGKLC 256 (387)
Q Consensus 180 ~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~-~~~~p~~~~-~~~~~~~~~~~g~ly 256 (387)
.+.+.. ......+.++|.+|-+.....+ .....+..||..+++ |.+ ++ +|.... .......+.++|+|.
T Consensus 86 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~---~~~~~IvsFDl~~E~----f~~~i~-~P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 86 ECSPPHHPLKSRGVCINGVLYYLAYTLKT---NPDYFIVSFDVSSER----FKEFIP-LPCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred ccCCCCccccCCeEEECCEEEEEEEECCC---CCcEEEEEEEcccce----Eeeeee-cCccccccccceEEEEECCEEE
Confidence 743321 1122267789999887643321 111268999999999 996 54 443321 111245677899999
Q ss_pred EEeeeC----CeEEEEE-CCCCceeeccccc---ccCCC---CcEEEEeCCeEEEEeCC-CCe-EEEEeCCCC
Q 016552 257 LVNVKG----AEGAVYD-VVANTWDDMREGM---VRGWR---GPVAAMDEEVLYGIDEN-SCT-LSRYDEVMD 316 (387)
Q Consensus 257 v~gg~~----~~i~~yD-~~~~~W~~~~~~~---~~~~~---~~~~~~~~~~ly~~~~~-~~~-l~~yd~~~~ 316 (387)
++.... -++++.+ -....|++.-... ..... .+..+..+|+|++.... .+. +..||++++
T Consensus 158 ~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 876532 3566654 3356798653211 11111 13445667788776643 234 889999875
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.72 E-value=4.2e-08 Score=64.32 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=41.2
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552 185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p 237 (387)
+|..+++++.+++|||+||..........+++++||+++++ |+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~----W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ----WTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCE----EeecCCCC
Confidence 57889999999999999999222234577899999999999 99999775
No 39
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-08 Score=93.25 Aligned_cols=169 Identities=13% Similarity=0.076 Sum_probs=117.0
Q ss_pred eccCCceeeCCCC----------CCCCcceeEEEeCC--EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCC--
Q 016552 170 DPICRTWTFGPEL----------VTPRRWCAAGCSRG--AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE-- 235 (387)
Q Consensus 170 d~~t~~W~~l~~~----------p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~-- 235 (387)
.+.+-+|.++++. |..|.+|.++...+ .||+.||.+. -..+.+.|+|+...+. |..+..
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~----W~~iN~~t 307 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQ----WTCINRDT 307 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcce----eEEeecCC
Confidence 3456788887643 45678888887755 8999999987 3456789999999999 998752
Q ss_pred -CCCCCccccceEEEEECC--EEEEEeeeC-----------CeEEEEECCCCceeecccc-----cccCCCCcEEEEeCC
Q 016552 236 -LKDGRFSREAIDAVGWKG--KLCLVNVKG-----------AEGAVYDVVANTWDDMREG-----MVRGWRGPVAAMDEE 296 (387)
Q Consensus 236 -~p~~~~~~~~~~~~~~~g--~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~-----~~~~~~~~~~~~~~~ 296 (387)
.|..| .+|-+|.--. |+|++|-+- .+++.||..++.|.-+... -|.....+.+++.+.
T Consensus 308 ~~PG~R---sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~ 384 (723)
T KOG2437|consen 308 EGPGAR---SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE 384 (723)
T ss_pred CCCcch---hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence 44444 3366665444 799987542 7899999999999987632 222223456667666
Q ss_pred e--EEEEeCCC--------CeEEEEeCCCCceeEcccccc----------ccCceEEEEe--CCeEEEEecCCC
Q 016552 297 V--LYGIDENS--------CTLSRYDEVMDDWKEVVKSDL----------LKGARHAAAG--GGRVCAVCENGG 348 (387)
Q Consensus 297 ~--ly~~~~~~--------~~l~~yd~~~~~W~~v~~~~~----------~~~~~~~~~~--~g~i~v~gg~~~ 348 (387)
+ |||+||.. +.+++||.....|......-. .|-.++|-.+ +..+|++||.+.
T Consensus 385 k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 385 KHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred cceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 6 99999831 469999999999987653211 1223444433 567899987654
No 40
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.67 E-value=4.8e-08 Score=91.41 Aligned_cols=186 Identities=12% Similarity=0.056 Sum_probs=125.5
Q ss_pred CCCeecCCCCCCCCcccccccCCCccccccceEEEEECC--EEEEEecccCCCCCCCCccEEEeccCCceeeCC---CCC
Q 016552 109 SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSG--KLILLAATTHNFNPALTRPLIFDPICRTWTFGP---ELV 183 (387)
Q Consensus 109 ~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~---~~p 183 (387)
+-+|..+++-... ....... .+.|-||++|...+ +||+.||+++ ...+.++|.|+...+.|.... ..|
T Consensus 238 ~~~W~~i~~~~~~--~~~~~~~---p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~~P 310 (723)
T KOG2437|consen 238 KPRWSQIIPKSTK--GDGEDNR---PGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTEGP 310 (723)
T ss_pred cccccccCchhhc--ccccccC---ccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCCCC
Confidence 4578877654310 1001111 24578999999877 9999999988 567889999999999999854 478
Q ss_pred CCCcceeEEEeCC--EEEEEecCCCC--C-CCCCcceEEEEECCCCccccCeEEcCCCCC---CCccccceEEEEECCE-
Q 016552 184 TPRRWCAAGCSRG--AVYVASGIGSQ--F-SSDVAKSVEKWDLMNGEKNSRWEKTGELKD---GRFSREAIDAVGWKGK- 254 (387)
Q Consensus 184 ~~r~~~~~~~~~~--~iyv~GG~~~~--~-~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~---~~~~~~~~~~~~~~g~- 254 (387)
..|++|.++.... |+|+.|-+-.. . .....+++|+||..++. |..+.--.. +....-.|.+++.+.+
T Consensus 311 G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~----W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 311 GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT----WMLLSEDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce----eEEecccccccCCcceeecceeeEecCcc
Confidence 8999988887655 99999876331 1 11234689999999999 998762111 1111122678887777
Q ss_pred -EEEEeeeC--------CeEEEEECCCCceeecccccccC---------CCCcE--EEEeCCeEEEEeCCC
Q 016552 255 -LCLVNVKG--------AEGAVYDVVANTWDDMREGMVRG---------WRGPV--AAMDEEVLYGIDENS 305 (387)
Q Consensus 255 -lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~---------~~~~~--~~~~~~~ly~~~~~~ 305 (387)
+||+||.. ..+++||.....|.......... +-+++ ....++.+|++++..
T Consensus 387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred eEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 99999965 56899999999998765311100 01111 223466889988754
No 41
>smart00612 Kelch Kelch domain.
Probab=98.64 E-value=4.7e-08 Score=63.34 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=40.0
Q ss_pred EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCC
Q 016552 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG 196 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~ 196 (387)
+||++||... ....+++++|||.+++|+++++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999754 3567889999999999999999999999888887654
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.63 E-value=1.7e-06 Score=77.53 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=80.1
Q ss_pred EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceE-EEEECCEEEEEeeeCCeEEEEECC
Q 016552 193 CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAID-AVGWKGKLCLVNVKGAEGAVYDVV 271 (387)
Q Consensus 193 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~~g~lyv~gg~~~~i~~yD~~ 271 (387)
-++.++.|.|..+. ++.++|..+++ ++..-.....+.- ..+.+|.+ +....+.++-+.|+.
T Consensus 244 qyd~rviisGSSDs--------TvrvWDv~tge---------~l~tlihHceaVLhlrf~ng~m-vtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 244 QYDERVIVSGSSDS--------TVRVWDVNTGE---------PLNTLIHHCEAVLHLRFSNGYM-VTCSKDRSIAVWDMA 305 (499)
T ss_pred eccceEEEecCCCc--------eEEEEeccCCc---------hhhHHhhhcceeEEEEEeCCEE-EEecCCceeEEEecc
Confidence 34778877765544 88999988887 1111111111111 22234433 334444677777766
Q ss_pred CCceeecccccccCCCCcE-EEEeCCeEEEEeC-CCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCe
Q 016552 272 ANTWDDMREGMVRGWRGPV-AAMDEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349 (387)
Q Consensus 272 ~~~W~~~~~~~~~~~~~~~-~~~~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~ 349 (387)
+-+=.++.. ...+..++. ++-.+++ |++.. .+.+|.+|++.+.+.... +...+...+|..++|+++|-|...+.
T Consensus 306 sps~it~rr-VLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRt--l~gHkRGIAClQYr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 306 SPTDITLRR-VLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNT 381 (499)
T ss_pred CchHHHHHH-HHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehh--hhcccccceehhccCeEEEecCCCce
Confidence 543111111 112222222 2223556 55543 345799999988866553 33455567788899999998877777
Q ss_pred EEEEeccCC
Q 016552 350 IVVVDVKAA 358 (387)
Q Consensus 350 i~~~d~~~~ 358 (387)
|-+||++.+
T Consensus 382 IRlwdi~~G 390 (499)
T KOG0281|consen 382 IRLWDIECG 390 (499)
T ss_pred EEEEecccc
Confidence 777777743
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.53 E-value=1e-07 Score=62.52 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=30.2
Q ss_pred ccceEEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC
Q 016552 137 NLPVQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184 (387)
Q Consensus 137 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~ 184 (387)
|.+|+++.+ ++.||++||.... ....+++++||+.+++|++++++|.
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS--
T ss_pred cceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCCCC
Confidence 566888888 5899999998763 2578899999999999999988873
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.53 E-value=1.1e-07 Score=62.29 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552 185 PRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 185 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p 237 (387)
||..|+++.+ +++|||+||.+. +...++++++||+.+++ |++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~--~~~~~~d~~~~d~~~~~----W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS--SGSPLNDLWIFDIETNT----WTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTE----EEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC--CCcccCCEEEEECCCCE----EEECCCCC
Confidence 5888888887 589999999977 33578899999999999 99998887
No 45
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=98.48 E-value=0.00023 Score=67.02 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=89.7
Q ss_pred eEEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCC--CcceE
Q 016552 140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSD--VAKSV 216 (387)
Q Consensus 140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~v 216 (387)
..++++ +.+|+.+... ....+||+.|..-..+|.++.+.....+..++++||++.......... .....
T Consensus 69 ~~F~al~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred eEEEEecCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 444454 8888888652 347999999999999999988877778888899999998764421111 00144
Q ss_pred EEE--ECC----CCccccCeEEcCCCCCCCcccc----ceEEEEECC-EEEE-EeeeCCeEEEEECCCCceeeccccccc
Q 016552 217 EKW--DLM----NGEKNSRWEKTGELKDGRFSRE----AIDAVGWKG-KLCL-VNVKGAEGAVYDVVANTWDDMREGMVR 284 (387)
Q Consensus 217 ~~y--d~~----~~~~~~~W~~~~~~p~~~~~~~----~~~~~~~~g-~lyv-~gg~~~~i~~yD~~~~~W~~~~~~~~~ 284 (387)
|++ ++. .....|.|..+++.|....... ..+-+++|| .|+| +.+.....++||.++.+|+...+ ...
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd-W~L 219 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD-WML 219 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc-eec
Confidence 555 421 2233466999887664432211 233345545 5665 33221258999999999999975 444
Q ss_pred CCCCcE
Q 016552 285 GWRGPV 290 (387)
Q Consensus 285 ~~~~~~ 290 (387)
++.+.+
T Consensus 220 PF~G~a 225 (342)
T PF07893_consen 220 PFHGQA 225 (342)
T ss_pred CcCCcc
Confidence 444433
No 46
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.47 E-value=9.6e-08 Score=61.99 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552 43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF 79 (387)
Q Consensus 43 ~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f 79 (387)
|..||+||+.+||++|| +.+++.|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 67899999999999999 89999999999999988744
No 47
>smart00612 Kelch Kelch domain.
Probab=98.36 E-value=8.5e-07 Score=57.29 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=37.7
Q ss_pred EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC
Q 016552 197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG 253 (387)
Q Consensus 197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g 253 (387)
+||++||... ....+++++||+.+++ |+.+++|+.++.. +++++++|
T Consensus 1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~~~~r~~---~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG---GQRLKSVEVYDPETNK----WTPLPSMPTPRSG---HGVAVING 47 (47)
T ss_pred CEEEEeCCCC---CceeeeEEEECCCCCe----EccCCCCCCcccc---ceEEEeCC
Confidence 5899999854 2456789999999999 9999999987754 66666654
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.36 E-value=1.3e-06 Score=57.23 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=39.1
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG 250 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 250 (387)
+++|||+||.+.. ....++++++||+.+++ |++++++|.+|.. |++++
T Consensus 1 g~~~~vfGG~~~~-~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~~---h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD-GGTRLNDVWVFDLDTNT----WTRIGDLPPPRSG---HTATV 48 (49)
T ss_pred CCEEEEECCcCCC-CCCEecCEEEEECCCCE----EEECCCCCCCccc---eEEEE
Confidence 5799999999831 34677899999999999 9999999987765 66654
No 49
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.19 E-value=1.3e-06 Score=54.66 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=32.2
Q ss_pred ChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552 46 LPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF 79 (387)
Q Consensus 46 LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f 79 (387)
||+|++.+||.+|+ +.+++.|||+|+.++.++.|
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~ 37 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDF 37 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhh
Confidence 79999999999999 88999999999999998876
No 50
>PLN02772 guanylate kinase
Probab=98.07 E-value=2.8e-05 Score=72.98 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=61.7
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeC---CCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCC
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG---PELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDV 212 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 212 (387)
+.++.++++++++||+||.+.. ...+..+++||..|++|... ...|.+|..|+++++ +++|+|+++....
T Consensus 25 ~~~~tav~igdk~yv~GG~~d~-~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~----- 98 (398)
T PLN02772 25 KNRETSVTIGDKTYVIGGNHEG-NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP----- 98 (398)
T ss_pred CCcceeEEECCEEEEEcccCCC-ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-----
Confidence 3457899999999999996652 23567899999999999984 466889999998888 5799999876542
Q ss_pred cceEEEEECCC
Q 016552 213 AKSVEKWDLMN 223 (387)
Q Consensus 213 ~~~v~~yd~~~ 223 (387)
-+++|.....|
T Consensus 99 ~~~~w~l~~~t 109 (398)
T PLN02772 99 DDSIWFLEVDT 109 (398)
T ss_pred ccceEEEEcCC
Confidence 13556555444
No 51
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.04 E-value=1.3e-06 Score=56.88 Aligned_cols=37 Identities=38% Similarity=0.541 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552 43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF 79 (387)
Q Consensus 43 ~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f 79 (387)
|..||+|++.+||.+|+ +.+++.|||+|+.++.+..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~ 42 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL 42 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence 56799999999999999 99999999999999988644
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.04 E-value=0.0045 Score=59.68 Aligned_cols=218 Identities=12% Similarity=0.129 Sum_probs=126.5
Q ss_pred EEEEEeCCCC--CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCc--e
Q 016552 101 HLFTFDPVSS--TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--W 176 (387)
Q Consensus 101 ~~~~~d~~~~--~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W 176 (387)
.++++|.+++ .|+.-..-+. ....+..++.+|+..+ ...++.+|+.|++ |
T Consensus 131 ~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W 184 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKW 184 (394)
T ss_pred EEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECC--------CCEEEEEEccCCCEee
Confidence 5788998764 5864221111 0123445777777433 1358999998874 8
Q ss_pred eeCCCCCC--CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC-----CccccceEEE
Q 016552 177 TFGPELVT--PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG-----RFSREAIDAV 249 (387)
Q Consensus 177 ~~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~-----~~~~~~~~~~ 249 (387)
+.-...+. .+...+.++.++.+|+..+. ..+..+|..+++.. |+.-...|.. +.......-+
T Consensus 185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~--W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 185 TVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLI--WQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred eecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhh--heeccccCCCccchhcccccCCCcE
Confidence 76433221 12233445567777775321 25677888887755 8753222211 0000012345
Q ss_pred EECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEccccc
Q 016552 250 GWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSD 325 (387)
Q Consensus 250 ~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~ 325 (387)
+.++.+|+.+.. ..+.++|+.++ .|+.--. . ....++.+++||+... ++.++++|.+++ .|+.-....
T Consensus 254 v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~---~---~~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALAYN-GNLVALDLRSGQIVWKREYG---S---VNDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEEcC-CeEEEEECCCCCEEEeecCC---C---ccCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccccCC
Confidence 679999987644 48999999987 4875321 1 1134567889998764 688999999876 475421111
Q ss_pred cccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEeC
Q 016552 326 LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDT 368 (387)
Q Consensus 326 ~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~~ 368 (387)
. .....+..+|+||+. ...+.++++|..++ .-.|+...
T Consensus 326 ~--~~~sp~v~~g~l~v~-~~~G~l~~ld~~tG--~~~~~~~~ 363 (394)
T PRK11138 326 R--LLTAPVLYNGYLVVG-DSEGYLHWINREDG--RFVAQQKV 363 (394)
T ss_pred C--cccCCEEECCEEEEE-eCCCEEEEEECCCC--CEEEEEEc
Confidence 1 112234568888876 44557888998754 23577643
No 53
>PF13854 Kelch_5: Kelch motif
Probab=98.01 E-value=1.8e-05 Score=49.80 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552 182 LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 182 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 223 (387)
+|.+|..|++++++++||++||... .+....+++++||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 4789999999999999999999984 1345678999999876
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.00 E-value=0.0059 Score=58.87 Aligned_cols=206 Identities=14% Similarity=0.072 Sum_probs=116.3
Q ss_pred EEEEEeCCCC--CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ce
Q 016552 101 HLFTFDPVSS--TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TW 176 (387)
Q Consensus 101 ~~~~~d~~~~--~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W 176 (387)
.++++|+.++ .|+.-...+. . ..+.....+..++.+|+..+ + ..++.+|+.+. .|
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~---~----------~~~~~~sP~v~~~~v~~~~~-~-------g~v~a~d~~~G~~~W 229 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPS---L----------TLRGESAPATAFGGAIVGGD-N-------GRVSAVLMEQGQLIW 229 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCc---c----------cccCCCCCEEECCEEEEEcC-C-------CEEEEEEccCChhhh
Confidence 5788898875 4764322221 0 00000123445666666433 1 24777888876 47
Q ss_pred eeCCCCCCC-----C---cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEE
Q 016552 177 TFGPELVTP-----R---RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDA 248 (387)
Q Consensus 177 ~~l~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 248 (387)
+.-...+.. | .....++.++.+|+.+.. ..+.++|..+++.. |+.-. ... ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~--W~~~~--~~~------~~~ 290 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---------GNLVALDLRSGQIV--WKREY--GSV------NDF 290 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEcC---------CeEEEEECCCCCEE--EeecC--CCc------cCc
Confidence 642111110 1 123445678899986421 26788999888755 87532 111 124
Q ss_pred EEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eeEcccc
Q 016552 249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD--WKEVVKS 324 (387)
Q Consensus 249 ~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~--W~~v~~~ 324 (387)
+..+++||+....+ .+.++|++++ .|+.-.. ......+.++.+++||+.+ .+|.++++|.++++ |+.-.
T Consensus 291 ~~~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~~---~~~~~~sp~v~~g~l~v~~-~~G~l~~ld~~tG~~~~~~~~-- 363 (394)
T PRK11138 291 AVDGGRIYLVDQND-RVYALDTRGGVELWSQSDL---LHRLLTAPVLYNGYLVVGD-SEGYLHWINREDGRFVAQQKV-- 363 (394)
T ss_pred EEECCEEEEEcCCC-eEEEEECCCCcEEEccccc---CCCcccCCEEECCEEEEEe-CCCEEEEEECCCCCEEEEEEc--
Confidence 56789999886554 7999999877 4864321 1122233455788998765 46889999998874 54311
Q ss_pred ccccCceEEEEeCCeEEEEecCCCeEEEEe
Q 016552 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 325 ~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d 354 (387)
.........+..+++||+. ..++.++.++
T Consensus 364 ~~~~~~s~P~~~~~~l~v~-t~~G~l~~~~ 392 (394)
T PRK11138 364 DSSGFLSEPVVADDKLLIQ-ARDGTVYAIT 392 (394)
T ss_pred CCCcceeCCEEECCEEEEE-eCCceEEEEe
Confidence 1111122234568888777 4444566654
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.012 Score=52.14 Aligned_cols=185 Identities=16% Similarity=0.220 Sum_probs=111.6
Q ss_pred EEEECCEEEEEecccCCCCCCCCccEEEeccCCc--eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 219 (387)
.+..++.+|+..+ ...++.+|+.|++ |+.-. +.+- .......+++||+.... ..+.++
T Consensus 32 ~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~~-~~~~~~~~~~v~v~~~~---------~~l~~~ 91 (238)
T PF13360_consen 32 AVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGPI-SGAPVVDGGRVYVGTSD---------GSLYAL 91 (238)
T ss_dssp EEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSCG-GSGEEEETTEEEEEETT---------SEEEEE
T ss_pred EEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--cccc-cceeeecccccccccce---------eeeEec
Confidence 3447888888743 1468999998874 66532 2221 22247778899887521 277899
Q ss_pred ECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCC--------C
Q 016552 220 DLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWR--------G 288 (387)
Q Consensus 220 d~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~--------~ 288 (387)
|..+++.. |+ .....+..... ......+.++.+|+... ...+.++|++++ .|+.--. .+.... .
T Consensus 92 d~~tG~~~--W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 92 DAKTGKVL--WSIYLTSSPPAGVR-SSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDIN 166 (238)
T ss_dssp ETTTSCEE--EEEEE-SSCTCSTB---SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEE
T ss_pred ccCCccee--eeeccccccccccc-cccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccc
Confidence 98888866 98 44432222111 11334445777776643 348999999987 4765432 222111 1
Q ss_pred cEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eeEccccccccCceE-EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 289 PVAAMDEEVLYGIDENSCTLSRYDEVMDD--WKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 289 ~~~~~~~~~ly~~~~~~~~l~~yd~~~~~--W~~v~~~~~~~~~~~-~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
...++.++.+|+... .+.+..+|.+++. |+.. ...... ....++.||+.. ....++.+|.+++
T Consensus 167 ~~~~~~~~~v~~~~~-~g~~~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 167 GSPVISDGRVYVSSG-DGRVVAVDLATGEKLWSKP-----ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEECCTTEEEEECC-TSSEEEEETTTTEEEEEEC-----SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred cceEEECCEEEEEcC-CCeEEEEECCCCCEEEEec-----CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 334455678888764 4446777999986 7332 111222 456677777775 7788999999965
No 56
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.91 E-value=0.0027 Score=56.88 Aligned_cols=200 Identities=20% Similarity=0.173 Sum_probs=116.5
Q ss_pred CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 223 (387)
++.||+..- .-..++.+|+.+++-..... +. ...++. -++++|++... ...++|+.+
T Consensus 11 ~g~l~~~D~-------~~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDI-------PGGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADSG----------GIAVVDPDT 69 (246)
T ss_dssp TTEEEEEET-------TTTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEETT----------CEEEEETTT
T ss_pred CCEEEEEEc-------CCCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEcC----------ceEEEecCC
Confidence 578888743 22578999999987665321 22 122222 36899988543 336679999
Q ss_pred CccccCeEEcCCCCCC--CccccceEEEEECCEEEEEeeeC--------CeEEEEECCCCceeecccccccCCCCcEEEE
Q 016552 224 GEKNSRWEKTGELKDG--RFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM 293 (387)
Q Consensus 224 ~~~~~~W~~~~~~p~~--~~~~~~~~~~~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~ 293 (387)
++ ++.+...+.. ...+.+-.++--+|.+|+..... ..++.+++. ++.+.+...+.. ...+++
T Consensus 70 g~----~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~ 141 (246)
T PF08450_consen 70 GK----VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAF 141 (246)
T ss_dssp TE----EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEE
T ss_pred Cc----EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEE
Confidence 98 8888765321 12222233445578999875432 358889988 666555432221 123333
Q ss_pred e--CCeEEEEeCCCCeEEEEeCCCCc--eeEcc---ccccccC-c-eEEEEeCCeEEEEecCCCeEEEEeccCCCCCCce
Q 016552 294 D--EEVLYGIDENSCTLSRYDEVMDD--WKEVV---KSDLLKG-A-RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIF 364 (387)
Q Consensus 294 ~--~~~ly~~~~~~~~l~~yd~~~~~--W~~v~---~~~~~~~-~-~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W 364 (387)
. ++.||+.+...+.|++||..... +.... ..+...+ + ..++--+|+||+..-.+..|.+||+..+ .-
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~----~~ 217 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK----LL 217 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC----EE
T ss_pred CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc----EE
Confidence 2 44688888777899999986443 33222 2222221 2 2233347899998778899999999954 55
Q ss_pred E-EeCCCCceeEEEEE
Q 016552 365 V-VDTPLGFEALSVHI 379 (387)
Q Consensus 365 ~-~~~p~~~~~~~~~~ 379 (387)
. +.+|.. +...+.+
T Consensus 218 ~~i~~p~~-~~t~~~f 232 (246)
T PF08450_consen 218 REIELPVP-RPTNCAF 232 (246)
T ss_dssp EEEE-SSS-SEEEEEE
T ss_pred EEEcCCCC-CEEEEEE
Confidence 5 366633 4444444
No 57
>PLN02772 guanylate kinase
Probab=97.89 E-value=0.00011 Score=69.14 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=60.9
Q ss_pred CCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeC
Q 016552 184 TPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG 262 (387)
Q Consensus 184 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~ 262 (387)
.++..++++.+++++||+||.++ .....+.+++||..+.+ |....-+..+..+|..|+++++ +++|+++....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~----W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNN----WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCC--CccccceEEEEECCCCc----EecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 36777889999999999999766 23356799999999999 9977633333344556888877 67899987543
Q ss_pred ---CeEEEEECCC
Q 016552 263 ---AEGAVYDVVA 272 (387)
Q Consensus 263 ---~~i~~yD~~~ 272 (387)
.++|.....|
T Consensus 97 ~~~~~~w~l~~~t 109 (398)
T PLN02772 97 APDDSIWFLEVDT 109 (398)
T ss_pred CCccceEEEEcCC
Confidence 5566655544
No 58
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.80 E-value=0.00047 Score=61.01 Aligned_cols=150 Identities=12% Similarity=0.167 Sum_probs=90.6
Q ss_pred cEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC-CCCCCCcc
Q 016552 166 PLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFS 242 (387)
Q Consensus 166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~ 242 (387)
..+||+.|++++.+... .-.+|+.. .-+|++.++||... ..+.+..|++.+....+.|.+.+ .|-.+|+-
T Consensus 48 s~~yD~~tn~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEecCCCcEEeccCC--CCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 47899999999977532 22233333 34789999999755 23467788887611112298876 47777754
Q ss_pred ccceEEEEECCEEEEEeeeCCeEEEEECC-CC-----ceeeccc---ccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeC
Q 016552 243 REAIDAVGWKGKLCLVNVKGAEGAVYDVV-AN-----TWDDMRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDE 313 (387)
Q Consensus 243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~-~~-----~W~~~~~---~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~ 313 (387)
.. ....-||+++|+||.....+.|-|. .. .|..+.. ..+..+.-.....-+|+||+++.. .-..||.
T Consensus 121 pT--~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~ 196 (243)
T PF07250_consen 121 PT--ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDY 196 (243)
T ss_pred cc--ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeC
Confidence 22 2334489999999987433334343 21 1222221 112223334455668899999754 4577899
Q ss_pred CCCce-eEcccccc
Q 016552 314 VMDDW-KEVVKSDL 326 (387)
Q Consensus 314 ~~~~W-~~v~~~~~ 326 (387)
.++++ +.+..+|.
T Consensus 197 ~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 197 KTNTVVRTLPDLPG 210 (243)
T ss_pred CCCeEEeeCCCCCC
Confidence 99976 55555553
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.78 E-value=0.017 Score=55.31 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=93.3
Q ss_pred ccEEEeccCC--ceeeCCCCCCC-----C---cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC
Q 016552 165 RPLIFDPICR--TWTFGPELVTP-----R---RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG 234 (387)
Q Consensus 165 ~~~vyd~~t~--~W~~l~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~ 234 (387)
.++.+|+.+. .|+.-...+.. + ........++.||+.... ..+.+||..+++.. |..-.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~--W~~~~ 269 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVL--WKRDA 269 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEE--Eeecc
Confidence 5788898876 57652221211 1 122334567888886421 26788999888755 87542
Q ss_pred CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEe
Q 016552 235 ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYD 312 (387)
Q Consensus 235 ~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd 312 (387)
+. . ...++.++++|+.... ..+.++|..++ .|+.... . .....+.++.++.||+.+ .+|.++++|
T Consensus 270 --~~--~----~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~--~-~~~~ssp~i~g~~l~~~~-~~G~l~~~d 336 (377)
T TIGR03300 270 --SS--Y----QGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDEL--K-YRQLTAPAVVGGYLVVGD-FEGYLHWLS 336 (377)
T ss_pred --CC--c----cCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccc--c-CCccccCEEECCEEEEEe-CCCEEEEEE
Confidence 11 1 2234668999987644 37999999876 5865321 1 111223345678888765 478999999
Q ss_pred CCCCc--eeEccccccccCceEEEEeCCeEEEEecCCCeEEEE
Q 016552 313 EVMDD--WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV 353 (387)
Q Consensus 313 ~~~~~--W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~ 353 (387)
.++++ |+.- ..........+..+++||+.+. ++.++.|
T Consensus 337 ~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 337 REDGSFVARLK--TDGSGIASPPVVVGDGLLVQTR-DGDLYAF 376 (377)
T ss_pred CCCCCEEEEEE--cCCCccccCCEEECCEEEEEeC-CceEEEe
Confidence 97763 4221 1111112334567788776643 4445543
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.67 E-value=0.02 Score=50.71 Aligned_cols=179 Identities=21% Similarity=0.204 Sum_probs=106.5
Q ss_pred ccEEEeccCC--ceeeCCCCCCCCccee--EEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552 165 RPLIFDPICR--TWTFGPELVTPRRWCA--AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 165 ~~~vyd~~t~--~W~~l~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~ 240 (387)
.+..+|+.++ .|+. .+........ ....++.+|+..+ ...+.++|..+++.. |+.-.+ .+.
T Consensus 4 ~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~--W~~~~~--~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVL--WRFDLP--GPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEE--EEEECS--SCG
T ss_pred EEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEE--EEeecc--ccc
Confidence 4577787666 4776 2221233333 4447889998832 137789999888855 776552 221
Q ss_pred ccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceee-ccccccc-CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDD-MREGMVR-GWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 241 ~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~-~~~~~~~-~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
. ...+..++.+|+....+ .+.++|.+++ .|+. ....... .......++.++.+|+.. ..+.|+++|++++
T Consensus 69 ~----~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG 142 (238)
T PF13360_consen 69 S----GAPVVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTG 142 (238)
T ss_dssp G----SGEEEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTT
T ss_pred c----ceeeeccccccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCC
Confidence 1 11467799998886443 8999998877 5983 4321111 223445556677776664 3789999999876
Q ss_pred --ceeEcccccccc--------CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEe
Q 016552 317 --DWKEVVKSDLLK--------GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD 367 (387)
Q Consensus 317 --~W~~v~~~~~~~--------~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~ 367 (387)
.|..-...++.. ....++..++.+|+..+.+. ++.+|..++ ...|...
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg--~~~w~~~ 200 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATG--EKLWSKP 200 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTT--EEEEEEC
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCC--CEEEEec
Confidence 477644433311 12444555688888755554 555588865 1238544
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.64 E-value=0.015 Score=55.56 Aligned_cols=193 Identities=16% Similarity=0.211 Sum_probs=107.8
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEE
Q 016552 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEK 218 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 218 (387)
..+..++.+|+.+.. ..++.+|+.|+ .|+.--.- +.....++.++++|+.+. + ..+.+
T Consensus 60 ~p~v~~~~v~v~~~~--------g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v~~~~v~v~~~-~--------g~l~a 119 (377)
T TIGR03300 60 QPAVAGGKVYAADAD--------GTVVALDAETGKRLWRVDLDE---RLSGGVGADGGLVFVGTE-K--------GEVIA 119 (377)
T ss_pred ceEEECCEEEEECCC--------CeEEEEEccCCcEeeeecCCC---CcccceEEcCCEEEEEcC-C--------CEEEE
Confidence 456678888876531 25899998876 48752211 112234455778887532 1 26788
Q ss_pred EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccC-CCCcEEEEeC
Q 016552 219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRG-WRGPVAAMDE 295 (387)
Q Consensus 219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~-~~~~~~~~~~ 295 (387)
+|..+++.. |+.-.. .... ...+..++++|+.... ..+.++|++++ .|+......... ....+.++.+
T Consensus 120 ld~~tG~~~--W~~~~~--~~~~----~~p~v~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 120 LDAEDGKEL--WRAKLS--SEVL----SPPLVANGLVVVRTND-GRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred EECCCCcEe--eeeccC--ceee----cCCEEECCEEEEECCC-CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 999887755 875431 1111 2234568888876543 47999999877 587543211111 1123344556
Q ss_pred CeEEEEeCCCCeEEEEeCCCC--ceeEcccccc-------c-cCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceE
Q 016552 296 EVLYGIDENSCTLSRYDEVMD--DWKEVVKSDL-------L-KGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~~-------~-~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~ 365 (387)
+.+| ++..++.++++|++++ .|+.-...+. . ......+..++.+|+. ..++.++.+|..++ ...|.
T Consensus 191 ~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-~~~g~l~a~d~~tG--~~~W~ 266 (377)
T TIGR03300 191 GGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV-SYQGRVAALDLRSG--RVLWK 266 (377)
T ss_pred CEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE-EcCCEEEEEECCCC--cEEEe
Confidence 6655 4445688999999876 4764221111 0 0011223346666665 33456777777643 23566
Q ss_pred E
Q 016552 366 V 366 (387)
Q Consensus 366 ~ 366 (387)
.
T Consensus 267 ~ 267 (377)
T TIGR03300 267 R 267 (377)
T ss_pred e
Confidence 4
No 62
>PF13854 Kelch_5: Kelch motif
Probab=97.63 E-value=0.00013 Score=45.77 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=31.8
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCC
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR 174 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~ 174 (387)
|.+|++++++++||++||.........+++|+||..+.
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 77899999999999999987433567889999998763
No 63
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.61 E-value=0.001 Score=58.83 Aligned_cols=135 Identities=10% Similarity=0.094 Sum_probs=88.6
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCC----CceeecccccccC-C
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVA----NTWDDMREGMVRG-W 286 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~----~~W~~~~~~~~~~-~ 286 (387)
...+||+.+++ ++.+.. ....++. ..+..-||++.+.||.. ..+..|++.+ ..|.+....|..+ |
T Consensus 47 ~s~~yD~~tn~----~rpl~v-~td~FCS--gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNT----FRPLTV-QTDTFCS--GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCc----EEeccC-CCCCccc--CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 45679999999 988763 3333431 12344589999999875 6688899876 6799887545555 4
Q ss_pred CCcEEEEeCCeEEEEeCCCCeEEEEeCCCC---ceeEc---cc----cccccCceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 287 RGPVAAMDEEVLYGIDENSCTLSRYDEVMD---DWKEV---VK----SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 287 ~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~---~W~~v---~~----~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
.......-+|+++++||...-.+.|-++.. ....+ .. .+...-++.-+.-+|+||+++..+ ..+||..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCC
Confidence 555666778999999997654555545421 11111 11 122233577778899999996653 5666888
Q ss_pred CC
Q 016552 357 AA 358 (387)
Q Consensus 357 ~~ 358 (387)
+.
T Consensus 198 ~n 199 (243)
T PF07250_consen 198 TN 199 (243)
T ss_pred CC
Confidence 76
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.47 E-value=0.009 Score=53.50 Aligned_cols=164 Identities=19% Similarity=0.079 Sum_probs=90.5
Q ss_pred EEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC---C--CcceeEEEeCCEEEEEecCCCCCCCCCc
Q 016552 141 QLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT---P--RRWCAAGCSRGAVYVASGIGSQFSSDVA 213 (387)
Q Consensus 141 ~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~---~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 213 (387)
.++.. ++.+|+... ....++|+.+++++.+...+. + +..-.++.-+|+||+..-..........
T Consensus 44 G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 44 GMAFDRPDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEEECTTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred eEEEEccCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence 44444 677887754 234777999999998776631 2 2233344447889987433221011111
Q ss_pred ceEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCCc--eeecccc--cccCC-
Q 016552 214 KSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANT--WDDMREG--MVRGW- 286 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~--W~~~~~~--~~~~~- 286 (387)
..+..+++. .+ ...+. .+..+ +..+..-++ .||+.......++.||+.... +...... .....
T Consensus 115 g~v~~~~~~-~~----~~~~~~~~~~p-----NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 184 (246)
T PF08450_consen 115 GSVYRIDPD-GK----VTVVADGLGFP-----NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG 184 (246)
T ss_dssp EEEEEEETT-SE----EEEEEEEESSE-----EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred cceEEECCC-Ce----EEEEecCcccc-----cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence 568888888 55 44443 22211 122333455 478776666789999986443 3322210 11111
Q ss_pred CCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccc
Q 016552 287 RGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVK 323 (387)
Q Consensus 287 ~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~ 323 (387)
....+++ .+|.||+.....+.|.+||++...-..+..
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC
Confidence 1123444 367899987667899999999665555543
No 65
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.28 E-value=0.065 Score=48.76 Aligned_cols=171 Identities=17% Similarity=0.098 Sum_probs=84.3
Q ss_pred ccEEEeccCCceeeCCCCC-CCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 165 RPLIFDPICRTWTFGPELV-TPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p-~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
.+.+||+.+++-...-... .++ .....-++ .+|+.++.+ ..+.+||..+.+ ....-..... .
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~~~--~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~--~ 75 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQRPR--GITLSKDGKLLYVCASDS--------DTIQVIDLATGE----VIGTLPSGPD--P 75 (300)
T ss_pred EEEEEECCCCceEEEEECCCCCC--ceEECCCCCEEEEEECCC--------CeEEEEECCCCc----EEEeccCCCC--c
Confidence 6788888776543321111 122 11222244 567776532 267889998877 5432111111 1
Q ss_pred ccceEEEEECC-EEEEEeeeCCeEEEEECCCCce-eecccccccCCCCcEEEE-eCCeEEEEeCCC-CeEEEEeCCCCce
Q 016552 243 REAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAM-DEEVLYGIDENS-CTLSRYDEVMDDW 318 (387)
Q Consensus 243 ~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~-~~l~~yd~~~~~W 318 (387)
......-++ .+|+.++.+..+.+||+.+.+- ..++. +.....+++ .++.+++++... ..+..||.++.+-
T Consensus 76 --~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 76 --ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred --cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 121222244 4666655456899999987542 12211 111122333 355666655433 3466788876533
Q ss_pred eEccccccccCceEEEEeCCeEEEEec-CCCeEEEEeccCC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg-~~~~i~~~d~~~~ 358 (387)
...... ...........+++.+++++ .++.+.+||..+.
T Consensus 150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 150 VDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 221111 11112223344566554544 4677899998854
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.24 E-value=0.032 Score=52.60 Aligned_cols=117 Identities=8% Similarity=-0.016 Sum_probs=75.2
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----C-----
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----A----- 263 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~----- 263 (387)
.++||+.++.. ..+.+||.++.. -...|.+..+... ..++.++++||++.... .
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~a----v~~~P~l~~pk~~---pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRA----VATGPRLHSPKRC---PISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCe----EeccCCCCCCCcc---eEEEEeCCeEEEeeccCccccccCccce
Confidence 58899887543 246889999999 7767766655433 45677899999997653 1
Q ss_pred eEEEE--EC--------CCCceeecccccccCCC-------CcEEEEe-CCeEEEEe-CCCCeEEEEeCCCCceeEccc-
Q 016552 264 EGAVY--DV--------VANTWDDMREGMVRGWR-------GPVAAMD-EEVLYGID-ENSCTLSRYDEVMDDWKEVVK- 323 (387)
Q Consensus 264 ~i~~y--D~--------~~~~W~~~~~~~~~~~~-------~~~~~~~-~~~ly~~~-~~~~~l~~yd~~~~~W~~v~~- 323 (387)
..+++ ++ ..-.|+.++. +|.... ..+-+++ |..|++-. +.....+.||+++.+|++++.
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccce
Confidence 44444 42 1226778775 333221 2344455 66777732 211258999999999999983
Q ss_pred -cccc
Q 016552 324 -SDLL 327 (387)
Q Consensus 324 -~~~~ 327 (387)
+|..
T Consensus 218 ~LPF~ 222 (342)
T PF07893_consen 218 MLPFH 222 (342)
T ss_pred ecCcC
Confidence 5543
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.24 E-value=0.15 Score=46.32 Aligned_cols=182 Identities=16% Similarity=0.040 Sum_probs=86.9
Q ss_pred EEEEEecccCCCCCCCCccEEEeccCCceee-CCCCCCCCcceeEEEeC-CEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552 148 KLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGCSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~-l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 225 (387)
.+|+.++.+ ..+.+||..+.+... ++....++ ..+..-+ +.+|+.++.+ ..+.+||..+.+
T Consensus 44 ~l~~~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~ 106 (300)
T TIGR03866 44 LLYVCASDS-------DTIQVIDLATGEVIGTLPSGPDPE--LFALHPNGKILYIANEDD--------NLVTVIDIETRK 106 (300)
T ss_pred EEEEEECCC-------CeEEEEECCCCcEEEeccCCCCcc--EEEECCCCCEEEEEcCCC--------CeEEEEECCCCe
Confidence 466665421 358889998877654 32211221 1122223 4566665422 267889988765
Q ss_pred cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEE-EeCCe-EEEEe
Q 016552 226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEV-LYGID 302 (387)
Q Consensus 226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~-ly~~~ 302 (387)
. -..++ ..... ......-+|++++++... ..+..||..+.+-.... ..+.....++ ..+++ ||+.+
T Consensus 107 ~---~~~~~---~~~~~--~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 107 V---LAEIP---VGVEP--EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---LVDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred E---EeEee---CCCCc--ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---EcCCCccEEEECCCCCEEEEEc
Confidence 1 12221 11110 122233467666665543 45667888765432110 1111111222 23444 44443
Q ss_pred CCCCeEEEEeCCCCceeE-ccc-ccc----ccCceEE-EEeCCe-EEEEecCCCeEEEEeccC
Q 016552 303 ENSCTLSRYDEVMDDWKE-VVK-SDL----LKGARHA-AAGGGR-VCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 303 ~~~~~l~~yd~~~~~W~~-v~~-~~~----~~~~~~~-~~~~g~-i~v~gg~~~~i~~~d~~~ 357 (387)
...+.+..||.++.+... +.. .+. ......+ ..-+++ +|+..+..+.+.++|..+
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 346789999998765422 111 010 0111122 233454 455545566788888863
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.20 E-value=0.13 Score=45.45 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=87.1
Q ss_pred CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552 147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK 226 (387)
Q Consensus 147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~ 226 (387)
+.+++.|+.+ ..+.+||..+++-...-..............+++.+++++.+. .+.+||..+++
T Consensus 21 ~~~l~~~~~~-------g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--------~i~i~~~~~~~- 84 (289)
T cd00200 21 GKLLATGSGD-------GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDK--------TIRLWDLETGE- 84 (289)
T ss_pred CCEEEEeecC-------cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCC--------eEEEEEcCccc-
Confidence 3555555532 3577788776642111111111111111122344556655433 67888888754
Q ss_pred ccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeC-CeEEEEeC
Q 016552 227 NSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDE-EVLYGIDE 303 (387)
Q Consensus 227 ~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~-~~ly~~~~ 303 (387)
-...-....... ...... ++++++.++....+.+||+.+.+-. .+.. .. .....+.... +.+++.+.
T Consensus 85 ---~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 85 ---CVRTLTGHTSYV----SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HT--DWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred ---ceEEEeccCCcE----EEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CC--CcEEEEEEcCcCCEEEEEc
Confidence 221111111000 112222 3466666654568999999855322 2211 11 1112333333 45555554
Q ss_pred CCCeEEEEeCCCCceeEccccccccCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 304 NSCTLSRYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 304 ~~~~l~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.++.+..||..+..- +......... .....-+++.+++++..+.+.+||....
T Consensus 155 ~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 155 QDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred CCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 478899999875422 1111121211 2222334546666666788999998853
No 69
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.17 E-value=0.061 Score=48.02 Aligned_cols=146 Identities=22% Similarity=0.163 Sum_probs=90.0
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN 273 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~ 273 (387)
.++.+|.--|... .+.+..||+.+++ =....++|..-|+ -..+.++++||.+.=....+.+||+.+-
T Consensus 54 ~~g~LyESTG~yG------~S~l~~~d~~tg~----~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 54 DDGTLYESTGLYG------QSSLRKVDLETGK----VLQSVPLPPRYFG---EGITILGDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp ETTEEEEEECSTT------EEEEEEEETTTSS----EEEEEE-TTT--E---EEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred CCCEEEEeCCCCC------cEEEEEEECCCCc----EEEEEECCccccc---eeEEEECCEEEEEEecCCeEEEEccccc
Confidence 4678988776533 2578899999998 6666677766554 5577889999999877788999999863
Q ss_pred ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc------cccCceEEEEeCCeEEEEecCC
Q 016552 274 TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD------LLKGARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 274 ~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~------~~~~~~~~~~~~g~i~v~gg~~ 347 (387)
+.+.. .+....+=+++..+..|++-+| +..|+.+||++- +.+.... +...---+-.++|.||.=--..
T Consensus 121 --~~~~~-~~y~~EGWGLt~dg~~Li~SDG-S~~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~t 194 (264)
T PF05096_consen 121 --KKIGT-FPYPGEGWGLTSDGKRLIMSDG-SSRLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQT 194 (264)
T ss_dssp --EEEEE-EE-SSS--EEEECSSCEEEE-S-SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEEEETTS
T ss_pred --eEEEE-EecCCcceEEEcCCCEEEEECC-ccceEEECCccc--ceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCC
Confidence 33432 1111223466666777777766 678999999763 2222111 1222233445577777644456
Q ss_pred CeEEEEeccCC
Q 016552 348 GGIVVVDVKAA 358 (387)
Q Consensus 348 ~~i~~~d~~~~ 358 (387)
+.|+..|+.++
T Consensus 195 d~I~~Idp~tG 205 (264)
T PF05096_consen 195 DRIVRIDPETG 205 (264)
T ss_dssp SEEEEEETTT-
T ss_pred CeEEEEeCCCC
Confidence 77888888865
No 70
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.16 E-value=0.16 Score=55.24 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=110.7
Q ss_pred eEEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCC-------CCC-------Ccc-eeEEEe--CCEEEE
Q 016552 140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL-------VTP-------RRW-CAAGCS--RGAVYV 200 (387)
Q Consensus 140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~-------p~~-------r~~-~~~~~~--~~~iyv 200 (387)
+.++.. ++.|||.-.. ...+.++|+.++.-+.++.- ... -.. ...+.. ++.+||
T Consensus 627 ~GIavd~~gn~LYVaDt~-------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTE-------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred cEEEEeCCCCEEEEEeCC-------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence 444443 4567886432 13577888877765554221 000 001 112222 678998
Q ss_pred EecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC----------C-CCccccceEEEEECC-EEEEEeeeCCeEEEE
Q 016552 201 ASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK----------D-GRFSREAIDAVGWKG-KLCLVNVKGAEGAVY 268 (387)
Q Consensus 201 ~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p----------~-~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~y 268 (387)
....+ +.+.+||..++. ......-. . ..+......++.-+| .||+.....+.+.+|
T Consensus 700 ad~~~--------~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 700 AMAGQ--------HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EECCC--------CeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 75432 367888887765 43322100 0 000001111222344 599988777899999
Q ss_pred ECCCCceeeccccc---c---------cC------CCCc-EEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccc---
Q 016552 269 DVVANTWDDMREGM---V---------RG------WRGP-VAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD--- 325 (387)
Q Consensus 269 D~~~~~W~~~~~~~---~---------~~------~~~~-~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~--- 325 (387)
|+.++.-..+...- + .+ ...+ ++++ .+|.||+.+..++.|.+||++++....+....
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 99876533221000 0 00 1112 2333 45689999888889999999988776654321
Q ss_pred ---------cccCceEE-EEeCCeEEEEecCCCeEEEEeccCC
Q 016552 326 ---------LLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 326 ---------~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
....+..+ +.-+|++||.-..++.|.++|+.+.
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 01123333 3357889999788899999999865
No 71
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.12 E-value=0.2 Score=47.27 Aligned_cols=232 Identities=19% Similarity=0.182 Sum_probs=119.2
Q ss_pred CCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEE--eccCC
Q 016552 97 STPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIF--DPICR 174 (387)
Q Consensus 97 ~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vy--d~~t~ 174 (387)
...+..+.||..++++..+...... .+|+| .....-++.||+..... .....+..| +..+.
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~-------~~Ps~------l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEG-------ENPSW------LAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTG 74 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEES-------SSECC------EEE-TTSSEEEEEETTS----STTTEEEEEEEETTTT
T ss_pred CCcEEEEEEcCCCCCceEeeeecCC-------CCCce------EEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcc
Confidence 3567788889899988766543221 12222 12112345688875432 123345555 55556
Q ss_pred ceeeCCCCCC-CCcceeEEE-e-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC---------CCCCCCcc
Q 016552 175 TWTFGPELVT-PRRWCAAGC-S-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG---------ELKDGRFS 242 (387)
Q Consensus 175 ~W~~l~~~p~-~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~---------~~p~~~~~ 242 (387)
+.+.+...+. ...-+..+. - +..||++--. ...+.+|+...+-. -.... +-+.....
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~--------~g~v~v~~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG--------GGSVSVFPLDDDGS---LGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETT--------TTEEEEEEECTTSE---EEEEEEEEESEEEESSTTTTSS
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc--------CCeEEEEEccCCcc---cceeeeecccCCCCCccccccc
Confidence 7877766553 222222222 2 3456765321 23677777766420 22211 11111122
Q ss_pred ccceEEEEE-CCE-EEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcE-EEE--eCCeEEEEeCCCCeEEEEeCC-
Q 016552 243 REAIDAVGW-KGK-LCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPV-AAM--DEEVLYGIDENSCTLSRYDEV- 314 (387)
Q Consensus 243 ~~~~~~~~~-~g~-lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~-~~~--~~~~ly~~~~~~~~l~~yd~~- 314 (387)
.+.|.+..- +|+ +|+..--.+.+.+|+...+. ...........-.+|. +++ .+..+|++...++.|.+|+..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 222444433 444 66554333789999887765 5443321111122332 333 245799998878887776665
Q ss_pred -CCceeEccccc---c-cc---CceEEEEe-CC-eEEEEecCCCeEEEEecc
Q 016552 315 -MDDWKEVVKSD---L-LK---GARHAAAG-GG-RVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 315 -~~~W~~v~~~~---~-~~---~~~~~~~~-~g-~i~v~gg~~~~i~~~d~~ 356 (387)
+..++.+...+ . .. .+..+... +| .||+...+.+.|.+|+++
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 66777665332 2 11 22333333 34 477777778899999995
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.03 E-value=0.18 Score=50.40 Aligned_cols=276 Identities=16% Similarity=0.144 Sum_probs=134.0
Q ss_pred CCCCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCCce--eeEEeecCCCCCCCCCCeE------------
Q 016552 39 HQPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPF--LSLYALFSPKSNSSSTPIH------------ 101 (387)
Q Consensus 39 ~~~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~~~--~~l~~~~~~~~~~~~~~~~------------ 101 (387)
....+..||-|+...||..|+ +..++.||+.|+.++.+...... ..+....-+ .......
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ks 180 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPP---KCEKGLPLKSGFKGRPWKS 180 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCc---ccCcccccccccccchhhh
Confidence 356789999999999999999 99999999999999988655211 011111100 0000000
Q ss_pred EEE-EeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC
Q 016552 102 LFT-FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP 180 (387)
Q Consensus 102 ~~~-~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~ 180 (387)
++. .....+.|............. . ..+. ..+....+. ++.-|. ....+.+||..+..-...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-------~~~~q~~~~-~~~~~s------~~~tl~~~~~~~~~~i~~~ 244 (537)
T KOG0274|consen 181 FYRRRFRLSKNWRKLFRRGYKVLLG-T-DDHV-------VLCLQLHDG-FFKSGS------DDSTLHLWDLNNGYLILTR 244 (537)
T ss_pred hhhhhhhccccccccccccceeecc-c-Ccch-------hhhheeecC-eEEecC------CCceeEEeecccceEEEee
Confidence 000 011122343332221100000 0 0000 011111111 122221 1123457777776655431
Q ss_pred -CCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEE
Q 016552 181 -ELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV 258 (387)
Q Consensus 181 -~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~ 258 (387)
........ +.+.. ++.+++.|-.+. ++.++|..++. -..+-... . ....+......+..
T Consensus 245 l~GH~g~V~-~l~~~~~~~~lvsgS~D~--------t~rvWd~~sg~----C~~~l~gh---~---stv~~~~~~~~~~~ 305 (537)
T KOG0274|consen 245 LVGHFGGVW-GLAFPSGGDKLVSGSTDK--------TERVWDCSTGE----CTHSLQGH---T---SSVRCLTIDPFLLV 305 (537)
T ss_pred ccCCCCCce-eEEEecCCCEEEEEecCC--------cEEeEecCCCc----EEEEecCC---C---ceEEEEEccCceEe
Confidence 12222211 11222 355666665443 66777877776 33322110 0 01112222333333
Q ss_pred -eeeCCeEEEEECCCCceeecccccccCCCCcE-EEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe
Q 016552 259 -NVKGAEGAVYDVVANTWDDMREGMVRGWRGPV-AAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG 336 (387)
Q Consensus 259 -gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~-~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 336 (387)
|..+..+.++|.+++.--.+-.+ ..++. .+..++.+.+.|..++.|.+||+.+.+-.. .+....+.......
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~----h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~--sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRG----HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK--SLSGHTGRVYSLIV 379 (537)
T ss_pred eccCCceEEEEeccCcceEEEecc----ccccEEEEEecCCEEEEEecCceEEEEEhhhceeee--eecCCcceEEEEEe
Confidence 34557899999886655433221 11222 223345566666667899999998653332 23234444555566
Q ss_pred CC-eEEEEecCCCeEEEEeccCC
Q 016552 337 GG-RVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 337 ~g-~i~v~gg~~~~i~~~d~~~~ 358 (387)
++ ..++-|+-...|-++|+.+.
T Consensus 380 ~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 380 DSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cCcceEEeeeeccceEeecCCch
Confidence 77 56665555667888888853
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.00 E-value=0.15 Score=45.08 Aligned_cols=172 Identities=13% Similarity=0.093 Sum_probs=82.1
Q ss_pred CccEEEeccCCceeeCCCCCCCC-cceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPR-RWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~ 241 (387)
..+.+||..+++-.. .+.... ........ ++++++.++.+. .+.+||..+.+. -..+......
T Consensus 73 ~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~---~~~~~~~~~~-- 137 (289)
T cd00200 73 KTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRDK--------TIKVWDVETGKC---LTTLRGHTDW-- 137 (289)
T ss_pred CeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCcEE---EEEeccCCCc--
Confidence 357888887753221 111111 11112222 346666665332 678899885551 2222211111
Q ss_pred cccceEEEEEC-CEEEEEeeeCCeEEEEECCCCce-eecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCce
Q 016552 242 SREAIDAVGWK-GKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDW 318 (387)
Q Consensus 242 ~~~~~~~~~~~-g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W 318 (387)
........ +.+++.+..+..+.+||..+.+- ..... . .....++... ++..+++++.++.+..||..+..-
T Consensus 138 ---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-H--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred ---EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec-C--ccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 01122222 45544444356899999875432 11111 1 1111223332 333455555578899999977433
Q ss_pred eEcccccccc-CceEEEEe-CCeEEEEecCCCeEEEEeccCC
Q 016552 319 KEVVKSDLLK-GARHAAAG-GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~-~~~~~~~~-~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.. ...... ....+... ++.+++.++..+.+.+||..+.
T Consensus 212 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 212 LG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred ec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 32 221111 12223333 3556666555788999998843
No 74
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.97 E-value=0.31 Score=48.49 Aligned_cols=204 Identities=14% Similarity=0.189 Sum_probs=109.4
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCCc-----ceeEEEeC-CEEEEEecCCCCCCCCC
Q 016552 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRR-----WCAAGCSR-GAVYVASGIGSQFSSDV 212 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r~-----~~~~~~~~-~~iyv~GG~~~~~~~~~ 212 (387)
..++.++.+|+.... ..++.+|+.|. .|+.-...+..+. ....+..+ ++||+...
T Consensus 56 sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------- 118 (488)
T ss_pred CCEEECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------
Confidence 456678888886431 35788898876 5876332221111 11223446 78887532
Q ss_pred cceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECCEEEEEee--------eCCeEEEEECCCC--ceeeccc-
Q 016552 213 AKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGKLCLVNV--------KGAEGAVYDVVAN--TWDDMRE- 280 (387)
Q Consensus 213 ~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg--------~~~~i~~yD~~~~--~W~~~~~- 280 (387)
...+.++|..+++.. |+.-..-+. ..+. -....++.++.+|+-.. ....+.++|.+++ .|+.-..
T Consensus 119 ~g~v~AlD~~TG~~~--W~~~~~~~~~~~~~-i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~ 195 (488)
T cd00216 119 DGRLVALDAETGKQV--WKFGNNDQVPPGYT-MTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE 195 (488)
T ss_pred CCeEEEEECCCCCEe--eeecCCCCcCcceE-ecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence 136788999988866 886543221 0010 01223556777776432 1246899999877 5864321
Q ss_pred cc---cc---------------CCCCcEEEEeCCeEEEEeCCC-----------------CeEEEEeCCCC--ceeEccc
Q 016552 281 GM---VR---------------GWRGPVAAMDEEVLYGIDENS-----------------CTLSRYDEVMD--DWKEVVK 323 (387)
Q Consensus 281 ~~---~~---------------~~~~~~~~~~~~~ly~~~~~~-----------------~~l~~yd~~~~--~W~~v~~ 323 (387)
.. .. .|..+++...++.+|+-.++. +.++++|.+++ .|+.-..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~ 275 (488)
T cd00216 196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT 275 (488)
T ss_pred CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence 00 00 011112222356777764321 37999999886 5775322
Q ss_pred cccc---cC--ceEEE---EeCCe---EEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 324 SDLL---KG--ARHAA---AGGGR---VCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 324 ~~~~---~~--~~~~~---~~~g~---i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
.+.. .. ...+. .+++. +++++..+..++.+|..+. ...|+.
T Consensus 276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--~~~W~~ 327 (488)
T cd00216 276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--KLISAR 327 (488)
T ss_pred CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC--cEeeEe
Confidence 2111 11 11122 13343 5556566777999999854 346875
No 75
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.94 E-value=0.21 Score=44.48 Aligned_cols=180 Identities=17% Similarity=0.084 Sum_probs=103.9
Q ss_pred ccEEEeccCCceeeCCCCCCCC--cceeEEEeC--CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552 165 RPLIFDPICRTWTFGPELVTPR--RWCAAGCSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r--~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~ 240 (387)
.+.++|++|..-++.+ +|..+ .+.-.++++ |+++..|-.+.. + .+|+.++. -+..+ .|.+.
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~y--G-------rLdPa~~~----i~vfp-aPqG~ 189 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGAY--G-------RLDPARNV----ISVFP-APQGG 189 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeeccccc--e-------ecCcccCc----eeeec-cCCCC
Confidence 5788999998877753 33322 344445554 578877653221 1 23444443 22221 12211
Q ss_pred ccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccccc--ccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce
Q 016552 241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDW 318 (387)
Q Consensus 241 ~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W 318 (387)
. ....++.-||.+|+..-.++.+-..|+.+..=+.++..- ..+.+...+-- -|++.+.....+.+++||+....|
T Consensus 190 g--pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 190 G--PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred C--CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccc
Confidence 1 113355679999998777778888999888544554311 11211111111 357888766678999999999999
Q ss_pred eEccccccccCceEE-EEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 319 KEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
.+-..+-.......+ |--.|++.+---+.+-|.-||+.+. .+.+
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta----~ftv 311 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA----RFTV 311 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc----eEEE
Confidence 986543322223322 2234677775445567788888876 6665
No 76
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.90 E-value=0.35 Score=45.22 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=89.0
Q ss_pred CccEEEeccC-CceeeCCCCCCCCc-ceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECC-CCccccCeEEcCCCCCC
Q 016552 164 TRPLIFDPIC-RTWTFGPELVTPRR-WCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDG 239 (387)
Q Consensus 164 ~~~~vyd~~t-~~W~~l~~~p~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~~~~~W~~~~~~p~~ 239 (387)
..+.+||..+ ++++.+...+.... ...+..-++ .||+.+... ..+.+|+.. +++ +..+...+.+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~----l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGA----LTFAAESPLP 79 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCc----eEEeeeecCC
Confidence 4678888764 46665544432221 111222234 567754321 356677775 445 6655433322
Q ss_pred CccccceEEEEECCE-EEEEeeeCCeEEEEECCCCc-e-eecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC
Q 016552 240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANT-W-DDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEV 314 (387)
Q Consensus 240 ~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~-W-~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~ 314 (387)
... .+.+..-+|+ +|+.+...+.+.+||..++. - ..+.. .+.....+.+++. ++.+|+.+...+.|.+||.+
T Consensus 80 ~~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 80 GSP--THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 111 1222223454 66665445788999886431 1 11211 1111112333333 45677777667899999997
Q ss_pred CCc-eeEcc----ccccccCceEEE-EeCC-eEEEEecCCCeEEEEecc
Q 016552 315 MDD-WKEVV----KSDLLKGARHAA-AGGG-RVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 315 ~~~-W~~v~----~~~~~~~~~~~~-~~~g-~i~v~gg~~~~i~~~d~~ 356 (387)
++. -.... ..+.-.++..++ .-+| .+|+.....+.+.+||++
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 632 21110 111112222233 2333 577776668899999987
No 77
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.86 E-value=0.11 Score=47.28 Aligned_cols=114 Identities=22% Similarity=0.343 Sum_probs=70.0
Q ss_pred EEEEecCCCCCCCC-CcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeC------CeEEEEE
Q 016552 198 VYVASGIGSQFSSD-VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG------AEGAVYD 269 (387)
Q Consensus 198 iyv~GG~~~~~~~~-~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~------~~i~~yD 269 (387)
|||.|-... .+. .+..+..||..+.+ |.....--.+. -...... +++||+.|... ..+..||
T Consensus 1 v~VGG~F~~--aGsL~C~~lC~yd~~~~q----W~~~g~~i~G~----V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 1 VYVGGSFTS--AGSLPCPGLCLYDTDNSQ----WSSPGNGISGT----VTDLQWASNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred CEEeeecCC--CCCcCCCEEEEEECCCCE----eecCCCCceEE----EEEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence 355555544 222 46789999999999 99887432121 1223333 67788776532 5688999
Q ss_pred CCCCceeecccccccCCCCcEEE--E---eCCeEEEEeC-CCC--eEEEEeCCCCceeEccc
Q 016552 270 VVANTWDDMREGMVRGWRGPVAA--M---DEEVLYGIDE-NSC--TLSRYDEVMDDWKEVVK 323 (387)
Q Consensus 270 ~~~~~W~~~~~~~~~~~~~~~~~--~---~~~~ly~~~~-~~~--~l~~yd~~~~~W~~v~~ 323 (387)
.++.+|+.+.........++..+ + ....+++-|. ..+ .|..| +..+|..+..
T Consensus 71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 99999998876332233334222 2 2335666554 223 35666 5778999876
No 78
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0014 Score=58.72 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=36.6
Q ss_pred CCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCC
Q 016552 41 PLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP 80 (387)
Q Consensus 41 ~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~ 80 (387)
..|-.|||||++.|++.|| |.++..|||||+++.++.+..
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 3488999999999999999 999999999999999998763
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.72 E-value=0.031 Score=49.87 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=71.7
Q ss_pred ECCEEEEEeee-C-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552 251 WKGKLCLVNVK-G-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 251 ~~g~lyv~gg~-~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~ 328 (387)
.+|.+|.-.|. + ..+..||+++++=..... ++....+-++++.+++||.+.-.++..++||.++ .+.+...+-..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~ 130 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG 130 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSSSEEEEEETTT--TEEEEEEE-SS
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCccccceeEEEECCEEEEEEecCCeEEEEcccc--ceEEEEEecCC
Confidence 57899977653 3 789999999987544333 5555567788899999999998889999999975 56666655444
Q ss_pred CceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552 329 GARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~ 357 (387)
..-+++ .+|+-++++.+...++++|+.+
T Consensus 131 EGWGLt-~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 131 EGWGLT-SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp S--EEE-ECSSCEEEE-SSSEEEEE-TTT
T ss_pred cceEEE-cCCCEEEEECCccceEEECCcc
Confidence 566666 5566666667788899999884
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.065 Score=50.88 Aligned_cols=174 Identities=9% Similarity=0.018 Sum_probs=89.2
Q ss_pred ccEEEeccCCceee-CCCCCCCCc-ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 165 RPLIFDPICRTWTF-GPELVTPRR-WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 165 ~~~vyd~~t~~W~~-l~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
.+-+|+..+..-.+ +..+ .+. +.+....+|++..+|+... .+.+||..+... -+.+-.-. ++
T Consensus 49 rvqly~~~~~~~~k~~srF--k~~v~s~~fR~DG~LlaaGD~sG--------~V~vfD~k~r~i---LR~~~ah~---ap 112 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRF--KDVVYSVDFRSDGRLLAAGDESG--------HVKVFDMKSRVI---LRQLYAHQ---AP 112 (487)
T ss_pred EEEEEecchhhhhhhHHhh--ccceeEEEeecCCeEEEccCCcC--------cEEEeccccHHH---HHHHhhcc---Cc
Confidence 45666665544332 1111 111 2233345799999988755 778899444220 11111000 11
Q ss_pred ccceEEEEECCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceeE
Q 016552 243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD-DWKE 320 (387)
Q Consensus 243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~-~W~~ 320 (387)
-+.......++.+++.++.+..+..+|..+..=. ++.. ..+-.+.....-.++.|++-|+.+|.|..||+.+. .|..
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 0001123468888888887766666777766521 1111 11111122222345678999988999999999887 4443
Q ss_pred ccccccccC-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 321 VVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 321 v~~~~~~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.+..-.. --.+..-.|.+++. .+|+.+-|||..++
T Consensus 192 --elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 192 --ELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTG 227 (487)
T ss_pred --EecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCC
Confidence 2222111 12122233344444 45566777777743
No 81
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.67 E-value=0.43 Score=42.59 Aligned_cols=174 Identities=11% Similarity=0.083 Sum_probs=97.9
Q ss_pred EEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceE
Q 016552 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAID 247 (387)
Q Consensus 168 vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~ 247 (387)
.+||.++.-+..+.....-.+-.++.-+|.+|+..=.+ +.+-..|+.+.. =++++ .|.+.....--.
T Consensus 172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag--------naiaridp~~~~----aev~p-~P~~~~~gsRri 238 (353)
T COG4257 172 RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG--------NAIARIDPFAGH----AEVVP-QPNALKAGSRRI 238 (353)
T ss_pred ecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc--------cceEEcccccCC----cceec-CCCccccccccc
Confidence 56777766555443333333445666788998873221 234445665554 22332 222210000001
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcccccc
Q 016552 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 248 ~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~ 326 (387)
.+---|++.+..--...+..|||...+|.+-+- +...-+..++-+ ..+++++-+-..+.|..||+++.+.+.+....+
T Consensus 239 wsdpig~~wittwg~g~l~rfdPs~~sW~eypL-Pgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 239 WSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL-PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ccCccCcEEEeccCCceeeEeCcccccceeeeC-CCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 111235666553333578999999999998763 122222233333 245777766667889999999999888776555
Q ss_pred ccCceEEEEeCCeEEEEecCCCeEEEEec
Q 016552 327 LKGARHAAAGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 327 ~~~~~~~~~~~g~i~v~gg~~~~i~~~d~ 355 (387)
..+...+....|++...-.+-..++++.+
T Consensus 318 n~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 318 NSGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred CCCceeccCCCCceeecccCcceeEEEEe
Confidence 55566666666777776444455555543
No 82
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.57 Score=43.13 Aligned_cols=239 Identities=16% Similarity=0.205 Sum_probs=121.6
Q ss_pred eeEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCC--CCcccccccCCCccccccceEEEEECCEEEEEecccCCCC
Q 016552 83 LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPP--DPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFN 160 (387)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~ 160 (387)
+.||+...+ ...+.+..|.+|+..++...+...+. .|+ .+.++.-++..++.+-+..
T Consensus 52 ~~LY~v~~~---~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p---------------~yvsvd~~g~~vf~AnY~~--- 110 (346)
T COG2706 52 RHLYVVNEP---GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP---------------CYVSVDEDGRFVFVANYHS--- 110 (346)
T ss_pred CEEEEEEec---CCcCcEEEEEEcCCCCeEEEeeccccCCCCC---------------eEEEECCCCCEEEEEEccC---
Confidence 468887764 34566677888888777766553322 211 1333444444444443332
Q ss_pred CCCCccEEEeccCC-c-e------eeCCCCCCCC-----cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccc
Q 016552 161 PALTRPLIFDPICR-T-W------TFGPELVTPR-----RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227 (387)
Q Consensus 161 ~~~~~~~vyd~~t~-~-W------~~l~~~p~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~ 227 (387)
..+.+|-..++ . | ....+-|.+| .+++-..-++++.+.--. -.+.+.+|+...+.
T Consensus 111 ---g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-------G~Dri~~y~~~dg~-- 178 (346)
T COG2706 111 ---GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-------GTDRIFLYDLDDGK-- 178 (346)
T ss_pred ---ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-------CCceEEEEEcccCc--
Confidence 23455544332 1 1 1122223445 222222334544333211 23578889888776
Q ss_pred cCeEEcCC--CCCCCccccceEEEEECCE-EEEEeeeCC--eEEEEECCCCceeeccc--ccccCCCCc--EEE----Ee
Q 016552 228 SRWEKTGE--LKDGRFSREAIDAVGWKGK-LCLVNVKGA--EGAVYDVVANTWDDMRE--GMVRGWRGP--VAA----MD 294 (387)
Q Consensus 228 ~~W~~~~~--~p~~~~~~~~~~~~~~~g~-lyv~gg~~~--~i~~yD~~~~~W~~~~~--~~~~~~~~~--~~~----~~ 294 (387)
-..... ++.+ ..+. |...--+++ .|++..-.+ .++.||...++.++++. .+|..+.+. +++ -.
T Consensus 179 --L~~~~~~~v~~G-~GPR-Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 179 --LTPADPAEVKPG-AGPR-HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred --cccccccccCCC-CCcc-eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 444332 2221 1111 434444565 578776553 45567777788887763 255555421 222 23
Q ss_pred CCeEEEEeCCCCeEEEE--eCCCCceeEccccc---cccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 295 EEVLYGIDENSCTLSRY--DEVMDDWKEVVKSD---LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~y--d~~~~~W~~v~~~~---~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
|..||+.......|.+| |+.++.-.-+..-+ ...+.+.+..-++-|++.+-.++.+.+|.++..
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 55677765434456665 55555443333221 223345555555666666667788888888743
No 83
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.59 E-value=0.65 Score=43.76 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=38.6
Q ss_pred eCCeEEEEe-C--------CCCeEEEEeCCCCceeEccccccccCceEE-EEeCCe--EEEEecCCCeEEEEeccCC
Q 016552 294 DEEVLYGID-E--------NSCTLSRYDEVMDDWKEVVKSDLLKGARHA-AAGGGR--VCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 294 ~~~~ly~~~-~--------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~g~--i~v~gg~~~~i~~~d~~~~ 358 (387)
.++++|+.. + ..+.++++|.++. +.+...+--.....+ +.-+++ +|+..+..+.+.++|..+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 367899943 2 1257999998665 455444333333333 344555 5555556788999999865
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.58 E-value=0.047 Score=51.54 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=73.7
Q ss_pred CCE-EEEEeeeCCeEEEEECCCCceeecccccccC--CCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552 252 KGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRG--WRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 252 ~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~--~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~ 328 (387)
+|. ..+.+|....+++||+++.+-.++....... ....-.+..++...++.|..|.|......+++|..--.++...
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v 347 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVV 347 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEE
Confidence 555 6666776678999999999888776422111 1112233345567777778899999999999987655555544
Q ss_pred CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
..++.. .+++.+++.++.+.|+++|+.+..--..|+.
T Consensus 348 ~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 348 SDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred eeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 444333 4556555555555899999997622234553
No 85
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.12 Score=48.89 Aligned_cols=189 Identities=11% Similarity=0.013 Sum_probs=104.3
Q ss_pred EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc--ceeEEEeCCE-EEEEecCCCCCCCCCcceEEEEECCCC
Q 016552 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR--WCAAGCSRGA-VYVASGIGSQFSSDVAKSVEKWDLMNG 224 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~--~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~ 224 (387)
.|++.+|.++ .-.+|..|=.+|. .+.++...+. ..+.-..+|. ..+++|... ...+||.++.
T Consensus 226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk--------y~ysyDle~a 290 (514)
T KOG2055|consen 226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK--------YLYSYDLETA 290 (514)
T ss_pred ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce--------EEEEeecccc
Confidence 5788888654 2345666777776 4444443221 1111122444 666665533 6788999999
Q ss_pred ccccCeEEcCCCCCCCcccc-ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC
Q 016552 225 EKNSRWEKTGELKDGRFSRE-AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE 303 (387)
Q Consensus 225 ~~~~~W~~~~~~p~~~~~~~-~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~ 303 (387)
+ -.++.++-. +.... ....+..++.+.++.|....|......|+.|-.--. +. +.-.......+++..++.+
T Consensus 291 k----~~k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie-G~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 291 K----VTKLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE-GVVSDFTFSSDSKELLASG 363 (514)
T ss_pred c----cccccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec-cEEeeEEEecCCcEEEEEc
Confidence 8 777764421 11000 012445566777777766678888888888843211 11 1000111123444444444
Q ss_pred CCCeEEEEeCCCCceeEcccc-ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 304 NSCTLSRYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 304 ~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
..|.|++||..++.-...-.. ....+...|...++..+.+|...+-+-+||-...
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 578999999998843322222 2234455566678887777666666778875543
No 86
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.52 E-value=1 Score=49.15 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=66.8
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccc---------c--cCCCCc-EEEEe--CCeEEEEeCCCCeEEEEeCCCCc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGM---------V--RGWRGP-VAAMD--EEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~---------~--~~~~~~-~~~~~--~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
++.+|+.....+.+.+||+.++......... . .....+ .+++. ++.||+.+..++.|.+||++++.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 6789988766678999999887655432100 0 001111 23332 44699998888899999998765
Q ss_pred eeEccc-cc-------------------cccCceE-EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 318 WKEVVK-SD-------------------LLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 318 W~~v~~-~~-------------------~~~~~~~-~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
-..+.. .+ ....+.. ++.-+|.|||.-..++.|.++|+.+.
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 332210 00 0112223 33456789999888899999999754
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.50 E-value=0.16 Score=46.72 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-CCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN 273 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~ 273 (387)
++.+.+.||.++ ...+++..++. |-.. +.-... .. +.+...+|.+...|+....+.+++..++
T Consensus 75 ~~~l~aTGGgDD--------~AflW~~~~ge----~~~eltgHKDS-Vt---~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 75 NNNLVATGGGDD--------LAFLWDISTGE----FAGELTGHKDS-VT---CCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred CCceEEecCCCc--------eEEEEEccCCc----ceeEecCCCCc-eE---EEEEccCceEEEecCCCccEEEEEcccC
Confidence 567788888765 66788888888 6532 211111 11 3455668887777776678888888766
Q ss_pred --ceeecccccccCCC--CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCe
Q 016552 274 --TWDDMREGMVRGWR--GPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349 (387)
Q Consensus 274 --~W~~~~~~~~~~~~--~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~ 349 (387)
+|......-...|- .+ .+.+++.|..+|.+|+|......-.++-.-+..+...+.+.-+||-.+.|-....
T Consensus 139 ~~~~~~~~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ceEEEeecccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 67654221111111 11 2457777778899999998776333332222233345555667888888778888
Q ss_pred EEEEeccCC
Q 016552 350 IVVVDVKAA 358 (387)
Q Consensus 350 i~~~d~~~~ 358 (387)
|.+||+.++
T Consensus 214 i~~Wn~ktg 222 (399)
T KOG0296|consen 214 IIVWNPKTG 222 (399)
T ss_pred EEEEecCCC
Confidence 999999976
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.32 E-value=1.4 Score=44.26 Aligned_cols=196 Identities=17% Similarity=0.269 Sum_probs=109.8
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCC--------cceeEEEeCCEEEEEecCCCCCCC
Q 016552 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR--------RWCAAGCSRGAVYVASGIGSQFSS 210 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~ 210 (387)
..++.++.||+.... ..++.+|..|. .|+.-...+... .....++.+++||+... +
T Consensus 64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d----- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D----- 129 (527)
T ss_pred CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----
Confidence 345678888886431 25788898876 587643322111 11224566788887421 1
Q ss_pred CCcceEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECCEEEEEeee-----CCeEEEEECCCC--ceee--ccc
Q 016552 211 DVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDD--MRE 280 (387)
Q Consensus 211 ~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~--~~~ 280 (387)
..+.++|..|++.. |+.-. ..... +. ....-++.+++||+-... ...+.+||.+++ .|+. ++.
T Consensus 130 ---g~l~ALDa~TGk~~--W~~~~~~~~~~-~~-~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 130 ---ARLVALDAKTGKVV--WSKKNGDYKAG-YT-ITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred ---CEEEEEECCCCCEE--eeccccccccc-cc-ccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 26789999999866 87543 11111 11 112345678998875321 257899999988 4763 322
Q ss_pred ccc------------c---CCC------Cc-----EEEEe--CCeEEEEeCC---------------CCeEEEEeCCCCc
Q 016552 281 GMV------------R---GWR------GP-----VAAMD--EEVLYGIDEN---------------SCTLSRYDEVMDD 317 (387)
Q Consensus 281 ~~~------------~---~~~------~~-----~~~~~--~~~ly~~~~~---------------~~~l~~yd~~~~~ 317 (387)
... . .|. +. ..++. .+.||+-.++ +..|.+.|.+|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~ 282 (527)
T TIGR03075 203 DMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK 282 (527)
T ss_pred CcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC
Confidence 100 0 010 00 11222 3456664432 1268999999874
Q ss_pred --eeEcccccc------ccCceEEEE--eCCe---EEEEecCCCeEEEEeccCC
Q 016552 318 --WKEVVKSDL------LKGARHAAA--GGGR---VCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 318 --W~~v~~~~~------~~~~~~~~~--~~g~---i~v~gg~~~~i~~~d~~~~ 358 (387)
|.--. .+. ......++- .+|+ +++.+...+.++++|..++
T Consensus 283 ~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 283 IKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred EEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 65322 221 112233443 4665 7878788888999999865
No 89
>PTZ00420 coronin; Provisional
Probab=96.25 E-value=1.4 Score=44.48 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=70.8
Q ss_pred EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCcee
Q 016552 197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD 276 (387)
Q Consensus 197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~ 276 (387)
.+++.||.+. .+.+||..+.+.. . .+. .+.. . ...+...+|.+.+.++.+..+.+||+.+++=.
T Consensus 139 ~iLaSgS~Dg--------tIrIWDl~tg~~~--~-~i~-~~~~-V---~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFDS--------FVNIWDIENEKRA--F-QIN-MPKK-L---SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCCC--------eEEEEECCCCcEE--E-EEe-cCCc-E---EEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 4555666544 7788999877621 1 121 1111 1 01122347887777766678999999876421
Q ss_pred -ecccccccCCCCcEEE-E----eCCeEEEEeCCC----CeEEEEeCCC-CceeEccccccccCceEE-E---EeCCeEE
Q 016552 277 -DMREGMVRGWRGPVAA-M----DEEVLYGIDENS----CTLSRYDEVM-DDWKEVVKSDLLKGARHA-A---AGGGRVC 341 (387)
Q Consensus 277 -~~~~~~~~~~~~~~~~-~----~~~~ly~~~~~~----~~l~~yd~~~-~~W~~v~~~~~~~~~~~~-~---~~~g~i~ 341 (387)
++.. ..+.....++ . .++..++.++.+ ..+..||... ..-....... .....+ - .-.|.+|
T Consensus 203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--NASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--CCccceEEeeeCCCCCEE
Confidence 1111 0110001111 1 233333333322 3699999874 2211111111 111111 1 2247788
Q ss_pred EEecCCCeEEEEeccCC
Q 016552 342 AVCENGGGIVVVDVKAA 358 (387)
Q Consensus 342 v~gg~~~~i~~~d~~~~ 358 (387)
+.|.+...|.+||+...
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 88878888999998743
No 90
>PTZ00421 coronin; Provisional
Probab=96.24 E-value=1.4 Score=43.67 Aligned_cols=144 Identities=12% Similarity=0.065 Sum_probs=73.3
Q ss_pred CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552 196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
+.+++.||.+. .+.+||..+++ -. .+....... .......+|.+.+.++.+..+.+||+.+++
T Consensus 138 ~~iLaSgs~Dg--------tVrIWDl~tg~----~~~~l~~h~~~V----~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM--------VVNVWDVERGK----AVEVIKCHSDQI----TSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC--------EEEEEECCCCe----EEEEEcCCCCce----EEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 35777777654 78899998776 22 222111110 011223367777777777889999998764
Q ss_pred e-eecccccccCCCCcEEE-E-eCCeEEEEeC---CCCeEEEEeCCCCceeEccccc-cccCceEE--EEeCCeEEEEec
Q 016552 275 W-DDMREGMVRGWRGPVAA-M-DEEVLYGIDE---NSCTLSRYDEVMDDWKEVVKSD-LLKGARHA--AAGGGRVCAVCE 345 (387)
Q Consensus 275 W-~~~~~~~~~~~~~~~~~-~-~~~~ly~~~~---~~~~l~~yd~~~~~W~~v~~~~-~~~~~~~~--~~~~g~i~v~gg 345 (387)
= ..+.. ..+.....++ . .++.++..+. .++.+..||..+..-. +.... .......+ ...++.++++||
T Consensus 202 ~v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 202 IVSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2 12211 1110011122 1 2344544442 2467999998653211 11100 11111212 223566666666
Q ss_pred -CCCeEEEEeccCC
Q 016552 346 -NGGGIVVVDVKAA 358 (387)
Q Consensus 346 -~~~~i~~~d~~~~ 358 (387)
+...|.+||+.+.
T Consensus 279 kgDg~Iriwdl~~~ 292 (493)
T PTZ00421 279 KGEGNIRCFELMNE 292 (493)
T ss_pred eCCCeEEEEEeeCC
Confidence 4677889998865
No 91
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.23 E-value=1 Score=42.01 Aligned_cols=181 Identities=15% Similarity=0.066 Sum_probs=86.5
Q ss_pred CccEEEecc-CCceeeCCCCCCCCc-ceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552 164 TRPLIFDPI-CRTWTFGPELVTPRR-WCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 164 ~~~~vyd~~-t~~W~~l~~~p~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~ 240 (387)
..+.+|+.. ++++..+...+.+.. .+.+..-++ .+|+..-. .+.+.+||..++... ...+...+...
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~~~~g~~--~~~~~~~~~~~ 126 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPLDKDGIP--VAPIQIIEGLE 126 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEECCCCCC--CCceeeccCCC
Confidence 456777765 456655443332211 222222244 56776422 136778887644210 11122111111
Q ss_pred ccccceEEE-EECC-EEEEEeeeCCeEEEEECCCC-ceeeccc---ccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEe
Q 016552 241 FSREAIDAV-GWKG-KLCLVNVKGAEGAVYDVVAN-TWDDMRE---GMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYD 312 (387)
Q Consensus 241 ~~~~~~~~~-~~~g-~lyv~gg~~~~i~~yD~~~~-~W~~~~~---~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd 312 (387)
. .+.++ .-+| .+|+.+...+.+.+||..++ ....... ..+.+.....+++ .+..+|+....++.+.+||
T Consensus 127 ~---~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 127 G---CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred c---ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 1 12222 2244 46666555578999999763 2221100 0111211122333 2447888876678898888
Q ss_pred CC--CCceeEccc---ccc----ccCceEEE-EeCCe-EEEEecCCCeEEEEeccC
Q 016552 313 EV--MDDWKEVVK---SDL----LKGARHAA-AGGGR-VCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 313 ~~--~~~W~~v~~---~~~----~~~~~~~~-~~~g~-i~v~gg~~~~i~~~d~~~ 357 (387)
.+ +++.+.+.. .|. .+....+. .-+|+ +|+.....+.|.+||+++
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 76 445544432 221 11111122 23454 666545567889998864
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.23 E-value=0.7 Score=44.12 Aligned_cols=189 Identities=11% Similarity=0.037 Sum_probs=96.5
Q ss_pred EEEECCEEEEEecccCCCCCCCCccEEEeccCCc-eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT-WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD 220 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~-W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 220 (387)
....+|+|+++|+..+ .+-+||..++. -+.+.....|-..--....++.+++.|+-+. .+..+|
T Consensus 75 ~fR~DG~LlaaGD~sG-------~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~--------v~k~~d 139 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESG-------HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK--------VVKYWD 139 (487)
T ss_pred EeecCCeEEEccCCcC-------cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc--------eEEEEE
Confidence 3446799999988543 57899944421 1222222222222223345778888876433 333444
Q ss_pred CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEE-EeCCeE
Q 016552 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAA-MDEEVL 298 (387)
Q Consensus 221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~-~~~~~l 298 (387)
..+.. ..+.-....-+.|. ....-.++.+.+.|+++..+-.||..+. .|. -. +..+.+.-.++ .-+|.+
T Consensus 140 ~s~a~-----v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v--~e-lnhg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 140 LSTAY-----VQAELSGHTDYVRC-GDISPANDHIVVTGSYDGKVRLWDTRSLTSRV--VE-LNHGCPVESVLALPSGSL 210 (487)
T ss_pred cCCcE-----EEEEecCCcceeEe-eccccCCCeEEEecCCCceEEEEEeccCCcee--EE-ecCCCceeeEEEcCCCCE
Confidence 44433 11110011112221 2233346778999999999999999887 443 11 22222222333 334456
Q ss_pred EEEeCCCCeEEEEeCCCCceeEccccc-cccCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552 299 YGIDENSCTLSRYDEVMDDWKEVVKSD-LLKGARHAAAG-GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 299 y~~~~~~~~l~~yd~~~~~W~~v~~~~-~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~ 356 (387)
++..+ +..+.+||+.++. +.+..+. ....-.++... ++.=++-|+-...+-+||+.
T Consensus 211 iasAg-Gn~vkVWDl~~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 211 IASAG-GNSVKVWDLTTGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred EEEcC-CCeEEEEEecCCc-eehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 55543 4578999987542 2222322 23322333332 33444454556778888866
No 93
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.17 E-value=0.75 Score=48.76 Aligned_cols=169 Identities=12% Similarity=0.032 Sum_probs=90.8
Q ss_pred ccEEEeccCCceeeCCCCCCC-CcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552 165 RPLIFDPICRTWTFGPELVTP-RRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~ 241 (387)
.+.+||..+++-.. .+... ....+.+. .++.+++.||.+. .+.+||..+... ...+.. ...
T Consensus 556 ~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~~~~---~~~~~~-~~~-- 619 (793)
T PLN00181 556 VVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQGVS---IGTIKT-KAN-- 619 (793)
T ss_pred eEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCCCcE---EEEEec-CCC--
Confidence 57788887654322 22111 11222222 2467777777654 788899876651 222221 100
Q ss_pred cccceEEEE---ECCEEEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 242 SREAIDAVG---WKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 242 ~~~~~~~~~---~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
..++. -+|.+++.|+.+..+.+||..+.. ...+.. ..-....+...++..++.++.++.|..||....
T Consensus 620 ----v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 620 ----ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred ----eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 11222 246777777777889999987642 211111 000112333445566666667789999998643
Q ss_pred ----ceeEccccccccC--ceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 317 ----DWKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 317 ----~W~~v~~~~~~~~--~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
.|..+........ .......++.+++.|+..+.+.+||..
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 2333332222111 222334467777777778889999875
No 94
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.15 E-value=0.59 Score=41.66 Aligned_cols=177 Identities=11% Similarity=0.127 Sum_probs=100.0
Q ss_pred ccEEEeccCCceeeCCCCCCCC--cce---eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552 165 RPLIFDPICRTWTFGPELVTPR--RWC---AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r--~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~ 239 (387)
.+.+++...+.|....+...-. .++ .+...++...+.++.+. .+..+|.++++.+ .........
T Consensus 39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~--------~lrlWDl~~g~~t---~~f~GH~~d 107 (315)
T KOG0279|consen 39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG--------TLRLWDLATGEST---RRFVGHTKD 107 (315)
T ss_pred EEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc--------eEEEEEecCCcEE---EEEEecCCc
Confidence 4566777777666543322111 111 22334667777776654 6677888886611 111100000
Q ss_pred CccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeC--CeEEEEeCCCCeEEEEeCCCCc
Q 016552 240 RFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE--EVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 240 ~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~--~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
. ...++.-|++-.+-|..++.+..||...+.=-++...+...|-.+....-+ +-+++-++.++.+.+||..+-+
T Consensus 108 V----lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 108 V----LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred e----EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 0 022334467777777777888888877765555544333333222212222 3344444567889999997763
Q ss_pred eeEccccccccC--ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 318 WKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 318 W~~v~~~~~~~~--~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
-.. ..+...+ ..+.+..+|.++.-||.+..++++|.+.+
T Consensus 184 l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 184 LRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred hhh--ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 222 1222222 46667789999999999999999999965
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.11 E-value=0.41 Score=44.71 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=82.9
Q ss_pred ceEEEEECCCCc-cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc-eeecccccccCCCCcEE
Q 016552 214 KSVEKWDLMNGE-KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVA 291 (387)
Q Consensus 214 ~~v~~yd~~~~~-~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~ 291 (387)
..+.+|+..... ...+++.+......- ...+.+.++|++.+..| ..+.+|+...++ +..... ........++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g---~V~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG---PVTAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAF-YDSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS----EEEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEE-E-BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC---cceEhhhhCCEEEEeec--CEEEEEEccCcccchhhhe-ecceEEEEEE
Confidence 578889888851 000166554333221 12456677888554433 589999998888 776664 3334455667
Q ss_pred EEeCCeEEEEeCCCC-eEEEEeCCCCceeEccccccccCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552 292 AMDEEVLYGIDENSC-TLSRYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 292 ~~~~~~ly~~~~~~~-~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~ 356 (387)
.+.++.|++-+...+ .++.||.+..+-..+..........++..+ ++..++++...+++.++...
T Consensus 136 ~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 778887776654333 467789877777787765555544445555 65666665666778777666
No 96
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.07 E-value=1.6 Score=42.79 Aligned_cols=177 Identities=8% Similarity=-0.006 Sum_probs=96.1
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|..+++-+.+...+......+....+.+|++....+. ...++++|..+++ ...+........
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~----~~~lt~~~~~~~-- 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA----LTRITRHRAIDT-- 309 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC----eEECccCCCCcc--
Confidence 4689999998887777655432222222222345665543221 2468889999888 877764321111
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W 318 (387)
.....-||+ |++..... ..++.+|+.+++++.+...... ...+.....|+.|++.....+ .|+.+|++++..
T Consensus 310 --~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 310 --EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred --ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 112223554 55443322 5788899999888776421111 112223234556666654333 688999999887
Q ss_pred eEccccccccCceEEEEeCCeEEEEec-C--CCeEEEEeccC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCE-N--GGGIVVVDVKA 357 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg-~--~~~i~~~d~~~ 357 (387)
+.+...... ... ...-+|+.+++.. . ...++++|...
T Consensus 387 ~~lt~~~~d-~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 387 QVLTSTRLD-ESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEccCCCCC-CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 766533211 111 2444555444432 2 24577788763
No 97
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.89 E-value=1.1 Score=42.27 Aligned_cols=147 Identities=22% Similarity=0.231 Sum_probs=79.1
Q ss_pred CccEEEeccCCc--eeeC-----CCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECC--CCccccCeEEc
Q 016552 164 TRPLIFDPICRT--WTFG-----PELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLM--NGEKNSRWEKT 233 (387)
Q Consensus 164 ~~~~vyd~~t~~--W~~l-----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~~~~~W~~~ 233 (387)
+.+++|+...+. .... ++-..||+ .+.. -+..+||+.-.. +.+.+|+.. +.. ++.+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh--~~f~pdg~~~Yv~~e~s--------~~v~v~~~~~~~g~----~~~~ 231 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH--LAFSPDGKYAYVVNELS--------NTVSVFDYDPSDGS----LTEI 231 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEE--EEE-TTSSEEEEEETTT--------TEEEEEEEETTTTE----EEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcE--EEEcCCcCEEEEecCCC--------CcEEEEeecccCCc----eeEE
Confidence 568888776655 5442 22223442 1222 234789986443 366666666 555 5544
Q ss_pred ---CCCCCCCccccceEEEEE--CCE-EEEEeeeCCeEEEEEC--CCCceeecccccccCCCCcEEEE--eCCeEEEEeC
Q 016552 234 ---GELKDGRFSREAIDAVGW--KGK-LCLVNVKGAEGAVYDV--VANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDE 303 (387)
Q Consensus 234 ---~~~p~~~~~~~~~~~~~~--~g~-lyv~gg~~~~i~~yD~--~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~ 303 (387)
+.+|...........+.+ ||+ ||+.....+.|.+|+. ++++-+.+......+..-..+++ .|+.||+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 344433211112233333 455 7776655578999987 44566655542222221122333 4667887777
Q ss_pred CCCeEEEE--eCCCCceeEcccc
Q 016552 304 NSCTLSRY--DEVMDDWKEVVKS 324 (387)
Q Consensus 304 ~~~~l~~y--d~~~~~W~~v~~~ 324 (387)
.++.|.+| |.+++.+..+...
T Consensus 312 ~s~~v~vf~~d~~tG~l~~~~~~ 334 (345)
T PF10282_consen 312 DSNTVSVFDIDPDTGKLTPVGSS 334 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEEEeCCCCcEEEeccc
Confidence 77777666 6678888887653
No 98
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.72 E-value=1.3 Score=43.72 Aligned_cols=178 Identities=15% Similarity=0.062 Sum_probs=96.4
Q ss_pred CccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552 164 TRPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~ 241 (387)
..+.+||...+ .-+.+..+....... +....+++++.|+.+. ++.++|..+.+ =...-.......
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~-~f~p~g~~i~Sgs~D~--------tvriWd~~~~~----~~~~l~~hs~~i 291 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSV-AFSPDGNLLVSGSDDG--------TVRIWDVRTGE----CVRKLKGHSDGI 291 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEE-EecCCCCEEEEecCCC--------cEEEEeccCCe----EEEeeeccCCce
Confidence 35778888433 334444444444222 2223447888887765 88999999876 332221111111
Q ss_pred cccceEEEEECCEEEEEeeeCCeEEEEECCCCcee---ecccccccCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCc
Q 016552 242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD---DMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSRYDEVMDD 317 (387)
Q Consensus 242 ~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~---~~~~~~~~~~~~~~~~~~~~~ly~~~-~~~~~l~~yd~~~~~ 317 (387)
. ..+.--+|.+++.+.++..+.+||+.++.-. ++....... ....+...-+-.|++. ..++.+..||.....
T Consensus 292 s---~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 292 S---GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred E---EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 1 2233346677777766688999999988742 222211111 2233444333344444 345678888887653
Q ss_pred eeEccc-ccc-ccCceEEE-EeCCeEEEEecCCCeEEEEeccCC
Q 016552 318 WKEVVK-SDL-LKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 318 W~~v~~-~~~-~~~~~~~~-~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
=..... ... .+..+..+ ..+++..+.|.....|.++|+.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 222111 111 11222222 446778888778889999999954
No 99
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.72 E-value=0.23 Score=39.54 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=53.5
Q ss_pred EEECCEEEEEeee----CCeEEEEECCCCceeecccc--cccCCCCcEEEEeCCeEEEEeCCC-C-----eEEEE-eCCC
Q 016552 249 VGWKGKLCLVNVK----GAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS-C-----TLSRY-DEVM 315 (387)
Q Consensus 249 ~~~~g~lyv~gg~----~~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~~~~-~-----~l~~y-d~~~ 315 (387)
+.+||.+|.+... ...|.+||+++++|+.++.+ ..........+..+|+|-++.... + +||+. |.++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 5679999988765 27899999999999988752 223334667778889998876432 1 35555 4567
Q ss_pred CceeEccc
Q 016552 316 DDWKEVVK 323 (387)
Q Consensus 316 ~~W~~v~~ 323 (387)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 89998653
No 100
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=0.65 Score=41.87 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=86.5
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD 294 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~ 294 (387)
++..||..++. -...-....+. ..++..|..--+.|+-+..+..||+.++.=..+... ..+. .++...
T Consensus 36 slrlYdv~~~~----l~~~~~~~~pl-----L~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-~~~i--~ci~~~ 103 (323)
T KOG1036|consen 36 SLRLYDVPANS----LKLKFKHGAPL-----LDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-DEGI--RCIEYS 103 (323)
T ss_pred cEEEEeccchh----hhhheecCCce-----eeeeccCCceEEEeccCceEEEEEecCCcceeeccC-CCce--EEEEee
Confidence 56778887776 22221111111 224444544344555557899999998875555431 1111 111111
Q ss_pred -CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCc
Q 016552 295 -EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGF 372 (387)
Q Consensus 295 -~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~ 372 (387)
.....+-|+.++.|..||+.+.. .+....... ...++...|..+|+|..+..+.+||+.+...+ .++ ..+-.+
T Consensus 104 ~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~--~q~reS~lky 178 (323)
T KOG1036|consen 104 YEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP--FQRRESSLKY 178 (323)
T ss_pred ccCCeEEEcccCccEEEEeccccc--cccccccCc-eEEEEeccCCEEEEeecCceEEEEEcccccch--hhhcccccee
Confidence 11245566678899999997621 111111122 44566667788888888899999999965222 133 555667
Q ss_pred eeEEEEEcc
Q 016552 373 EALSVHIMP 381 (387)
Q Consensus 373 ~~~~~~~~~ 381 (387)
+..++..+|
T Consensus 179 qtR~v~~~p 187 (323)
T KOG1036|consen 179 QTRCVALVP 187 (323)
T ss_pred EEEEEEEec
Confidence 888888888
No 101
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.38 E-value=1.4 Score=43.70 Aligned_cols=119 Identities=14% Similarity=0.194 Sum_probs=68.9
Q ss_pred eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc--cceEEEEEC-CEEEEEeeeCCeEE
Q 016552 190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR--EAIDAVGWK-GKLCLVNVKGAEGA 266 (387)
Q Consensus 190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~--~~~~~~~~~-g~lyv~gg~~~~i~ 266 (387)
..++.+++||+.... ..+.++|..+++.. |+.-...+...... -....++.+ +++|+.... ..+.
T Consensus 56 sPvv~~g~vy~~~~~---------g~l~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~-g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH---------SALFALDAATGKVL--WRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD-GRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC---------CcEEEEECCCChhh--ceeCCCCCccccccccccCCcEEccCCeEEEecCC-CeEE
Confidence 446778999986431 36788899888766 88644322100000 001124456 888876543 4899
Q ss_pred EEECCCC--ceeecccccc-cCC-CCcEEEEeCCeEEEEeC--------CCCeEEEEeCCCC--ceeE
Q 016552 267 VYDVVAN--TWDDMREGMV-RGW-RGPVAAMDEEVLYGIDE--------NSCTLSRYDEVMD--DWKE 320 (387)
Q Consensus 267 ~yD~~~~--~W~~~~~~~~-~~~-~~~~~~~~~~~ly~~~~--------~~~~l~~yd~~~~--~W~~ 320 (387)
++|.+++ .|+.-..... ... ...+.++.++.+|+-.. ..+.++++|.+++ .|+.
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 9999877 5875432110 111 12234455666665421 2467999999876 5865
No 102
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.30 E-value=3.1 Score=40.47 Aligned_cols=175 Identities=5% Similarity=-0.051 Sum_probs=98.4
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
..+|++|..+++=+.+...+..-... ...-++ +|.+.-.... ...++++|..++. ++.+...+....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~-~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~----~~~LT~~~~~d~- 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVS-DVSKDGSKLLLTMAPKG------QPDIYLYDTNTKT----LTQITNYPGIDV- 280 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEee-EECCCCCEEEEEEccCC------CcEEEEEECCCCc----EEEcccCCCccC-
Confidence 36788888888777765432211111 122244 5655433211 2478999999998 998875542111
Q ss_pred ccceEEEEECC-EEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--------CeEEEE
Q 016552 243 REAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSRY 311 (387)
Q Consensus 243 ~~~~~~~~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--------~~l~~y 311 (387)
.....-|| +||+..... ..++.+|+.+++.+.+... +.........|+.|.+..... ..|+.+
T Consensus 281 ---~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 281 ---NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred ---ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 11222345 577765433 5799999998888666431 111222333444454444321 369999
Q ss_pred eCCCCceeEccccccccCceEEEEeCCeEEE-Eec--CCCeEEEEeccCC
Q 016552 312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCA-VCE--NGGGIVVVDVKAA 358 (387)
Q Consensus 312 d~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v-~gg--~~~~i~~~d~~~~ 358 (387)
|.+++.++.+..... .......-+|+.++ ... +...+.+++.+..
T Consensus 355 d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 355 STNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred ECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 999999888776421 11223455666444 432 2345777887743
No 103
>smart00284 OLF Olfactomedin-like domains.
Probab=95.25 E-value=2.1 Score=38.27 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=105.5
Q ss_pred cCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE
Q 016552 172 ICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW 251 (387)
Q Consensus 172 ~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 251 (387)
..+.|.+=|..+.+. ++++|++.+.+. ..+.+..|....+-...++...-.+|.+.. ....+++
T Consensus 19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~~-----~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~---GtG~VVY 82 (255)
T smart00284 19 KSGAWMKDPLWNTTK--------KSLYWYMPLNTR-----VLRSVREYSSMSDFQMGKNPTDHPLPHAGQ---GTGVVVY 82 (255)
T ss_pred ccceeecCCCCCCCC--------CceEEEEccccC-----CCcEEEEecCHHHHhccCCceEEECCCccc---cccEEEE
Confidence 456777654332211 468888866532 123556664432211111444444664432 3568999
Q ss_pred CCEEEEEeeeCCeEEEEECCCCce---eecccc-----cccCCCC---cEEEEeCCeEEEEe---CCCCeE--EEEeCCC
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTW---DDMREG-----MVRGWRG---PVAAMDEEVLYGID---ENSCTL--SRYDEVM 315 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W---~~~~~~-----~~~~~~~---~~~~~~~~~ly~~~---~~~~~l--~~yd~~~ 315 (387)
+|.+|.-......|..||+.+++= ..++.. .+-.+.+ .=.++..+-|+++= .+.|.| -..|+++
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t 162 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT 162 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence 999998766567899999999864 444421 1111112 22445555677763 333544 3577765
Q ss_pred C----ceeEccccccccCceEEEEeCCeEEEEecC---CCe-EEEEeccCCCCCCceE-EeCCCCc-eeEEEEEccCC
Q 016552 316 D----DWKEVVKSDLLKGARHAAAGGGRVCAVCEN---GGG-IVVVDVKAAAAPTIFV-VDTPLGF-EALSVHIMPRM 383 (387)
Q Consensus 316 ~----~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~-i~~~d~~~~~~~~~W~-~~~p~~~-~~~~~~~~~~~ 383 (387)
- +|.. .. +.+....+..+.|.||++-.. +.. .+.||..+. . .... ++.+..+ -...++|+|+=
T Consensus 163 L~ve~tW~T--~~-~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~-~-~~~~~i~f~n~y~~~s~l~YNP~d 235 (255)
T smart00284 163 LTIENTWIT--TY-NKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTG-K-EGHLDIPFENMYEYISMLDYNPND 235 (255)
T ss_pred ceEEEEEEc--CC-CcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCC-c-cceeeeeeccccccceeceeCCCC
Confidence 3 4544 11 222334556677899999632 233 488899865 2 2233 4555444 46668898874
No 104
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.23 E-value=2.5 Score=39.00 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=90.1
Q ss_pred EEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC-CCCCCCccee-EEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552 143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP-ELVTPRRWCA-AGCSRGAVYVASGIGSQFSSDVAKSVEKWD 220 (387)
Q Consensus 143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~-~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 220 (387)
...++..|++|.. . -++.-.=.-.+|++++ +.+.+-..+. .+.-++.+++++... .+|-
T Consensus 68 ~f~~~~g~ivG~~-g-------~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G-----------~iy~ 128 (302)
T PF14870_consen 68 SFDGNEGWIVGEP-G-------LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG-----------AIYR 128 (302)
T ss_dssp EEETTEEEEEEET-T-------EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT-------------EEE
T ss_pred EecCCceEEEcCC-c-------eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC-----------cEEE
Confidence 3356778887641 1 1232233456999975 2233333333 334456677765432 2233
Q ss_pred CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEE
Q 016552 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLY 299 (387)
Q Consensus 221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly 299 (387)
....-.+ |+.+..-...-.. .....-+|++++++..+......|+....|...... ..++-.++. ..++.|+
T Consensus 129 T~DgG~t--W~~~~~~~~gs~~---~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw 201 (302)
T PF14870_consen 129 TTDGGKT--WQAVVSETSGSIN---DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLW 201 (302)
T ss_dssp ESSTTSS--EEEEE-S----EE---EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EE
T ss_pred eCCCCCC--eeEcccCCcceeE---eEEECCCCcEEEEECcccEEEEecCCCccceEEccC--ccceehhceecCCCCEE
Confidence 3322222 9987633222110 112234677666776666677889999999887652 223333333 3466788
Q ss_pred EEeCCCCeEEEEe--CCCCceeEccccccccC-c-eEEEEe-CCeEEEEecCCCeEEEEeccCCCCCCceEE-----eCC
Q 016552 300 GIDENSCTLSRYD--EVMDDWKEVVKSDLLKG-A-RHAAAG-GGRVCAVCENGGGIVVVDVKAAAAPTIFVV-----DTP 369 (387)
Q Consensus 300 ~~~~~~~~l~~yd--~~~~~W~~v~~~~~~~~-~-~~~~~~-~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-----~~p 369 (387)
++. ..+.|..=| ....+|.+-..+....+ . .-++.. ++.+++.||.+ .+++=+-. |+.|+. ..|
T Consensus 202 ~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~S~Dg----GktW~~~~~~~~~~ 275 (302)
T PF14870_consen 202 MLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLVSTDG----GKTWQKDRVGENVP 275 (302)
T ss_dssp EEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESST----TSS-EE-GGGTTSS
T ss_pred EEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEEeCCC----CccceECccccCCC
Confidence 876 466677666 45678888333222222 1 222322 47788876665 34433333 358995 335
Q ss_pred CCceeEEEE
Q 016552 370 LGFEALSVH 378 (387)
Q Consensus 370 ~~~~~~~~~ 378 (387)
..|..+.|-
T Consensus 276 ~n~~~i~f~ 284 (302)
T PF14870_consen 276 SNLYRIVFV 284 (302)
T ss_dssp S---EEEEE
T ss_pred CceEEEEEc
Confidence 566555543
No 105
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.20 E-value=0.38 Score=44.09 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=72.0
Q ss_pred eEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccc
Q 016552 246 IDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKS 324 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~ 324 (387)
...+-++++ |++...+ ..+-+.|..|......-.+ -.++.+.+-..|++.+-|..+.+|..||.+.+.--.+-
T Consensus 323 VNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~g---HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL-- 396 (499)
T KOG0281|consen 323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL-- 396 (499)
T ss_pred eeeeccccc-eEEEecCCceEEEEeccceeeehhhhc---ccccceehhccCeEEEecCCCceEEEEeccccHHHHHH--
Confidence 445667888 5555444 7788888888776543221 22344555567898888877889999999887543322
Q ss_pred ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 325 ~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+....-..++-.+++=+|-|+..+.|-++|..++
T Consensus 397 eGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 397 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hchHHhhhheeecCceeeeccccceEEEEecccc
Confidence 1222234567778888888888888888888866
No 106
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.16 E-value=2.6 Score=38.86 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=79.4
Q ss_pred cCCceeeCCCCCCCCcceeEEEeC-CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE
Q 016552 172 ICRTWTFGPELVTPRRWCAAGCSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG 250 (387)
Q Consensus 172 ~t~~W~~l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 250 (387)
..+.|+.+. +|...........+ ++-|++|-.. . +|-....-.+ |.....-..............
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g---------~--il~T~DGG~t--W~~~~~~~~~~~~~~l~~I~f 69 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYG---------T--ILKTTDGGKT--WQPVSLDLDNPFDYHLNSISF 69 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTT---------E--EEEESSTTSS---EE-----S-----EEEEEEE
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCC---------E--EEEECCCCcc--ccccccCCCccceeeEEEEEe
Confidence 356788875 44444444444444 5668876432 1 2222222222 998762211111111122334
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeeccccccc-CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccC
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVR-GWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG 329 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~ 329 (387)
.++..|++|..+ .++.-.=.-.+|+.++...+. +......+..++..++.+ ..|.|+.=.-...+|+.+.....-.-
T Consensus 70 ~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~ 147 (302)
T PF14870_consen 70 DGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSETSGSI 147 (302)
T ss_dssp ETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S----E
T ss_pred cCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCCccee
Confidence 577888876543 333333355689998632111 111122334555666665 35778887778889998764322111
Q ss_pred ceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE---eCCCCceeEEEE
Q 016552 330 ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV---DTPLGFEALSVH 378 (387)
Q Consensus 330 ~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~---~~p~~~~~~~~~ 378 (387)
......-+|++++++..|.-....|.-+. .|+. ......+.|++.
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~----~w~~~~r~~~~riq~~gf~ 195 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQT----TWQPHNRNSSRRIQSMGFS 195 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-S----S-EEEE--SSS-EEEEEE-
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCc----cceEEccCccceehhceec
Confidence 12223456777777666665556676654 6874 334445555543
No 107
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.13 E-value=2.3 Score=38.08 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=98.1
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCc-cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGE-KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN 273 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~ 273 (387)
++++|++.+... +.+..|....+- ...+....-.+|.+.. +...++++|.+|.--.....|..||+.++
T Consensus 30 ~~~iy~~~~~~~-------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~---GtG~vVYngslYY~~~~s~~IvkydL~t~ 99 (250)
T PF02191_consen 30 SEKIYVTSGFSG-------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQ---GTGHVVYNGSLYYNKYNSRNIVKYDLTTR 99 (250)
T ss_pred CCCEEEECccCC-------CEEEEEcCHhHHhhcCCCceEEEEeceec---cCCeEEECCcEEEEecCCceEEEEECcCC
Confidence 457888877644 144555332221 0001444445554332 35678899999988776689999999988
Q ss_pred c---eeeccccccc-----CCCC---cEEEEeCCeEEEEeC---CCCe--EEEEeCCC----CceeEccccccccCceEE
Q 016552 274 T---WDDMREGMVR-----GWRG---PVAAMDEEVLYGIDE---NSCT--LSRYDEVM----DDWKEVVKSDLLKGARHA 333 (387)
Q Consensus 274 ~---W~~~~~~~~~-----~~~~---~~~~~~~~~ly~~~~---~~~~--l~~yd~~~----~~W~~v~~~~~~~~~~~~ 333 (387)
+ |..++..... .+.+ .-.++.++-|+++-. ..|. |-..|+++ .+|..- . +.+....+
T Consensus 100 ~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~--~-~k~~~~na 176 (250)
T PF02191_consen 100 SVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS--Y-PKRSAGNA 176 (250)
T ss_pred cEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec--c-Cchhhcce
Confidence 5 5556532111 1111 224455556777632 2333 34467654 356531 1 22233445
Q ss_pred EEeCCeEEEEecCC---CeE-EEEeccCCCCCCceEEeCCCCc-eeEEEEEccCCC
Q 016552 334 AAGGGRVCAVCENG---GGI-VVVDVKAAAAPTIFVVDTPLGF-EALSVHIMPRMS 384 (387)
Q Consensus 334 ~~~~g~i~v~gg~~---~~i-~~~d~~~~~~~~~W~~~~p~~~-~~~~~~~~~~~~ 384 (387)
..+.|.||++-... ..| ++||..++ +...=.++.+..+ ....++|.|+=.
T Consensus 177 FmvCGvLY~~~s~~~~~~~I~yafDt~t~-~~~~~~i~f~~~~~~~~~l~YNP~dk 231 (250)
T PF02191_consen 177 FMVCGVLYATDSYDTRDTEIFYAFDTYTG-KEEDVSIPFPNPYGNISMLSYNPRDK 231 (250)
T ss_pred eeEeeEEEEEEECCCCCcEEEEEEECCCC-ceeceeeeeccccCceEeeeECCCCC
Confidence 66778999997542 333 88999965 2221113444333 677889999743
No 108
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.00 E-value=3.9 Score=43.42 Aligned_cols=144 Identities=8% Similarity=0.022 Sum_probs=73.5
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN- 273 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~- 273 (387)
+++++++|+.+. .+.+||..+.... ...+...... .......++..++.++.+..+.++|+...
T Consensus 629 ~g~~latgs~dg--------~I~iwD~~~~~~~--~~~~~~h~~~-----V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 629 SGRSLAFGSADH--------KVYYYDLRNPKLP--LCTMIGHSKT-----VSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred CCCEEEEEeCCC--------eEEEEECCCCCcc--ceEecCCCCC-----EEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence 466777776544 7888998765300 2222111111 01223346666666666678999998653
Q ss_pred ---ceeecccccccCCCC--cEEEE-eCCeEEEEeCCCCeEEEEeCCCCc--eeEcc----cccc-----ccCceEEE--
Q 016552 274 ---TWDDMREGMVRGWRG--PVAAM-DEEVLYGIDENSCTLSRYDEVMDD--WKEVV----KSDL-----LKGARHAA-- 334 (387)
Q Consensus 274 ---~W~~~~~~~~~~~~~--~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~--W~~v~----~~~~-----~~~~~~~~-- 334 (387)
.|..+.. . .+... ..++. .++.+++.++.++.+.+||..... |.... .... .......+
T Consensus 694 ~~~~~~~l~~-~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 694 SGINETPLHS-F-MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred cccCCcceEE-E-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEE
Confidence 2332221 0 11111 12222 245666667678899999976432 22110 0000 11112222
Q ss_pred EeCCeEEEEecCCCeEEEEec
Q 016552 335 AGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 335 ~~~g~i~v~gg~~~~i~~~d~ 355 (387)
.-++..++.|+..+.|.+||+
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 335667777777788888875
No 109
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.99 E-value=0.46 Score=43.30 Aligned_cols=107 Identities=10% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC----
Q 016552 162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL---- 236 (387)
Q Consensus 162 ~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~---- 236 (387)
.+..+-.||..+.+|..+..--.. ........ +++||+.|-... +......+..||..+.+ |..++.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~--~~~~~~~la~yd~~~~~----w~~~~~~~s~~ 86 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTL--NGTNSSNLATYDFKNQT----WSSLGGGSSNS 86 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEE--CCCCceeEEEEecCCCe----eeecCCccccc
Confidence 577889999999999986543111 11222223 678888886654 22245578999999999 9988752
Q ss_pred -CCCCccccceEEEEECC-EEEEEeeeC---CeEEEEECCCCceeeccc
Q 016552 237 -KDGRFSREAIDAVGWKG-KLCLVNVKG---AEGAVYDVVANTWDDMRE 280 (387)
Q Consensus 237 -p~~~~~~~~~~~~~~~g-~lyv~gg~~---~~i~~yD~~~~~W~~~~~ 280 (387)
|.+... ......|+ .+++.|... ..+..|| ..+|+.+..
T Consensus 87 ipgpv~a---~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVTA---LTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCCcEEE---EEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 322110 11111233 466555422 5577775 557998875
No 110
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.93 E-value=0.79 Score=42.56 Aligned_cols=193 Identities=19% Similarity=0.206 Sum_probs=95.5
Q ss_pred CCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCcee
Q 016552 98 TPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT 177 (387)
Q Consensus 98 ~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~ 177 (387)
+..++-+.|...++-..--+.|.+ ..-|.....+|.+.+-+|.+..+.=-..+ .......-+|++..+-.-
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~PGC--------~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G-k~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDTPGC--------WLIYPSGNRGFSMLCGDGSLLTVTLDADG-KEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEGTSE--------EEEEEEETTEEEEEETTSCEEEEEETSTS-SEEEEEEEESSTTTS-B-
T ss_pred CCCeEEEEECCCCceeeeecCCCE--------EEEEecCCCceEEEecCCceEEEEECCCC-CEeEeeccccCCCCcccc
Confidence 677788899988876544344442 11122233457777777776665431121 112223356676665433
Q ss_pred eCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc-ccCeEEcCCCCCCCccccceEEEE--ECCE
Q 016552 178 FGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK-NSRWEKTGELKDGRFSREAIDAVG--WKGK 254 (387)
Q Consensus 178 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~-~~~W~~~~~~p~~~~~~~~~~~~~--~~g~ 254 (387)
.-+.....-.......++|+||-+-=.+. ...-...+...++.+ .-.|+.-. + ...+. -.++
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-----~~~~~~~~~~~t~~e~~~~WrPGG------~----Q~~A~~~~~~r 251 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGD-----SAKFGKPWSLLTDAEKADGWRPGG------W----QLIAYHAASGR 251 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTS-----SEEEEEEEESS-HHHHHTTEEE-S------S----S-EEEETTTTE
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCC-----cccccCcccccCccccccCcCCcc------e----eeeeeccccCe
Confidence 32222222223445677888887532211 111222333322110 00166443 2 22222 2578
Q ss_pred EEEEeeeC---------CeEEEEECCCCcee-ecccccccCCCCcEEEEeC-C--eEEEEeCCCCeEEEEeCCCCce
Q 016552 255 LCLVNVKG---------AEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDE-E--VLYGIDENSCTLSRYDEVMDDW 318 (387)
Q Consensus 255 lyv~gg~~---------~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~-~--~ly~~~~~~~~l~~yd~~~~~W 318 (387)
||++-..+ ..|++||+++++=- .++- ... ..++.+.. . .||.+...++.|.+||..+++-
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 99874332 78999999998632 2221 111 12344432 2 5777776678999999999843
No 111
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.81 E-value=4.3 Score=39.55 Aligned_cols=177 Identities=9% Similarity=-0.030 Sum_probs=89.8
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|..+++=+.+...+......+....+.+|++....+. ...++.+|..++. ...+..-....
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~--- 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSG----LRRLTQSSGID--- 286 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC------CceEEEEECCCCC----cEECCCCCCCC---
Confidence 4589999988876666544422221111122335655433222 2467788887776 66654321110
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W 318 (387)
......-||+ |++.+... ..++.+|..++..+.+... ......+.....|..|++.....+ .|++||.+++..
T Consensus 287 -~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 287 -TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred -cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 1122333565 55443322 4677778777766655321 111112222223445555543333 699999998877
Q ss_pred eEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA 357 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~ 357 (387)
+.+..... .......-+|+.+++... ...++++|.+.
T Consensus 365 ~~lt~~~~--~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 365 TALTDTTR--DESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EEccCCCC--ccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 76653211 122234556665555432 24567777753
No 112
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.77 E-value=4.4 Score=39.53 Aligned_cols=178 Identities=7% Similarity=-0.036 Sum_probs=96.7
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|..+++-+.+...+...........+.+|++....+. ...+.++|..+++ -..+........
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~----~~~lt~~~~~~~-- 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ----LTRLTNHFGIDT-- 295 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC----eEECccCCCCcc--
Confidence 4689999999888777655432222222222345655432221 1478889998888 666653221111
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W 318 (387)
.....-||+ |++..... ..++.+|..+++.+.+... ......+...-.++.|++.....+ .|++||++++..
T Consensus 296 --~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 296 --EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred --ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 112233554 54443322 4688889888887766421 111112222234556666654332 599999998888
Q ss_pred eEccccccccCceEEEEeCCeEEEEec---CCCeEEEEeccCC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCE---NGGGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg---~~~~i~~~d~~~~ 358 (387)
+.+...... ......-+|+.+++.. +...++++|.+..
T Consensus 373 ~~Lt~~~~~--~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 373 RTLTPGSLD--ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EECCCCCCC--CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 766543211 1223455666555443 2356888888643
No 113
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.70 E-value=4.5 Score=39.33 Aligned_cols=177 Identities=10% Similarity=0.006 Sum_probs=97.8
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|..+++-+.+...+..-........+.+|++....+. ...++++|..++. ...+..-+....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~~-- 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ----LSRVTNHPAIDT-- 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC----eEEcccCCCCcC--
Confidence 4689999999988877654422111111122345654432211 1478899999998 877764321111
Q ss_pred cceEEEEECC-EEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552 244 EAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W 318 (387)
.....-|| +|++..... ..++.+|+.+++++.+... ......+.....++.|++.....+ .|+.+|.+++..
T Consensus 291 --~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 291 --EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred --CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 11222355 465554332 5788899988888766421 111111222234556666654333 589999999888
Q ss_pred eEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA 357 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~ 357 (387)
+.+....... .....-+|+.+++... ...+++++...
T Consensus 368 ~~lt~~~~~~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 368 RILTDTSLDE--SPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEccCCCCCC--CceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 7776432211 1234556676666532 24577777764
No 114
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=94.67 E-value=3.2 Score=37.43 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=106.5
Q ss_pred ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC----CCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEE
Q 016552 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP----ELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~----~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~y 219 (387)
-.+..+.+||.+. .+.+|+..+..=+-.. .++....+.+++. .++.-++.|..+ .++..+
T Consensus 107 PSg~~VAcGGLdN-------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalW 171 (343)
T KOG0286|consen 107 PSGNFVACGGLDN-------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALW 171 (343)
T ss_pred CCCCeEEecCcCc-------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEE
Confidence 4677888888643 4688888866433222 2333444444443 344444444322 266778
Q ss_pred ECCCCccccCeEEcCCCCCCCccccceE-EE-EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCC
Q 016552 220 DLMNGEKNSRWEKTGELKDGRFSREAID-AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEE 296 (387)
Q Consensus 220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~-~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~ 296 (387)
|.++.+ =...-. +.. .+..+ .. -.+++.|+-|+.+......|.....-...=.+.... ..++. .-+|
T Consensus 172 Die~g~----~~~~f~---GH~-gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD--INsv~ffP~G 241 (343)
T KOG0286|consen 172 DIETGQ----QTQVFH---GHT-GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD--INSVRFFPSG 241 (343)
T ss_pred Ecccce----EEEEec---CCc-ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc--cceEEEccCC
Confidence 888887 222110 000 00010 11 116788888887767777777766432221111111 12222 3466
Q ss_pred eEEEEeCCCCeEEEEeCCCCceeEcccccc-ccC-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 297 VLYGIDENSCTLSRYDEVMDDWKEVVKSDL-LKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 297 ~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~-~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.-|..|.+++....||...+.=..+-..+. ..+ ........|++++.|.....+.++|.-+.
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 777777778889999999884444333332 222 34445678999999888889999998854
No 115
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.67 E-value=0.88 Score=45.65 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=71.5
Q ss_pred eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc-----cceEEEEECCEEEEEeeeCCe
Q 016552 190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR-----EAIDAVGWKGKLCLVNVKGAE 264 (387)
Q Consensus 190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~-----~~~~~~~~~g~lyv~gg~~~~ 264 (387)
..++.++.||+.... ..+.++|..+++.. |+.-...+...... .....++.++++|+.... ..
T Consensus 64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~l--W~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g~ 131 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKEL--WKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-AR 131 (527)
T ss_pred CCEEECCEEEEECCC---------CcEEEEECCCCcee--eEecCCCCcccccccccccccccceEECCEEEEEcCC-CE
Confidence 445678999996431 25788999988866 88654333211100 001235678899875443 47
Q ss_pred EEEEECCCC--ceeecccccccCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceeE
Q 016552 265 GAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSRYDEVMD--DWKE 320 (387)
Q Consensus 265 i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~-----~~~~l~~yd~~~~--~W~~ 320 (387)
+.++|.+++ .|+.-......+. ...+.++.+++||+-.. ..+.|.+||.+++ .|+.
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999999888 5875432122111 12334456778777532 2468999999886 4764
No 116
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.66 E-value=4.9 Score=39.55 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=76.5
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-E
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-M 293 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~ 293 (387)
.+.+||...+... -..+...+...+ +.+..-+|.+++.|+.+..+.++|.++.+-...-.....+ ..+++ -
T Consensus 226 tiriwd~~~~~~~--~~~l~gH~~~v~----~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~ 297 (456)
T KOG0266|consen 226 TLRIWDLKDDGRN--LKTLKGHSTYVT----SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFS 297 (456)
T ss_pred eEEEeeccCCCeE--EEEecCCCCceE----EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEEC
Confidence 7888999544211 334443433321 3344446678888888889999999985543321111111 11222 2
Q ss_pred eCCeEEEEeCCCCeEEEEeCCCCcee---Eccccccc-cCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 294 DEEVLYGIDENSCTLSRYDEVMDDWK---EVVKSDLL-KGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 294 ~~~~ly~~~~~~~~l~~yd~~~~~W~---~v~~~~~~-~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.++.+++.+..++.+.+||.++..=. .+...... ....+...-+++.++.+..+..+-.||+...
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 35566666666788999999888632 33322222 2233333445666666556667888888754
No 117
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.62 E-value=4.3 Score=38.68 Aligned_cols=199 Identities=14% Similarity=0.152 Sum_probs=110.1
Q ss_pred EEECCEEEEEecccCCCCCCCCccEEEeccCCc--eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552 143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD 220 (387)
Q Consensus 143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 220 (387)
+..++++|+... + ..++.+|+.+.+ |+....-............+|+||+-... ..+.+||
T Consensus 65 ~~~dg~v~~~~~-~-------G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~---------g~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVGTR-D-------GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD---------GKLYALD 127 (370)
T ss_pred EeeCCeEEEecC-C-------CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc---------ceEEEEE
Confidence 566788888611 1 168899999886 87643220011111122237888775321 1678899
Q ss_pred CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-cccCCCCcEEEEeCCe
Q 016552 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-MVRGWRGPVAAMDEEV 297 (387)
Q Consensus 221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-~~~~~~~~~~~~~~~~ 297 (387)
..+++.. |....... .... ...++.++.+|+.. ....+.++|..++ .|..--.. ......+..+ +.++.
T Consensus 128 ~~~G~~~--W~~~~~~~-~~~~---~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~ 199 (370)
T COG1520 128 ASTGTLV--WSRNVGGS-PYYA---SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT 199 (370)
T ss_pred CCCCcEE--EEEecCCC-eEEe---cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecce
Confidence 9766644 88665441 1111 33566788888775 2247888888866 58733321 1222222222 56678
Q ss_pred EEEEeCC-CCeEEEEeCCCC--ceeEcccccc--------ccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 298 LYGIDEN-SCTLSRYDEVMD--DWKEVVKSDL--------LKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 298 ly~~~~~-~~~l~~yd~~~~--~W~~v~~~~~--------~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
+|+-... ++.++++|++++ .|..-...+. .......+..++.+|.. ..+..++.+|.... ..+|+.
T Consensus 200 vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~G--~~~W~~ 276 (370)
T COG1520 200 VYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADTG--ELIWSF 276 (370)
T ss_pred EEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCCC--ceEEEE
Confidence 8876432 457999999775 5774221111 11123334445555444 33344777777733 357887
Q ss_pred eCC
Q 016552 367 DTP 369 (387)
Q Consensus 367 ~~p 369 (387)
+.+
T Consensus 277 ~~~ 279 (370)
T COG1520 277 PAG 279 (370)
T ss_pred ecc
Confidence 654
No 118
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.35 E-value=5.6 Score=38.86 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=94.7
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|+.+++.+.+...+...........+.+|++....+. ...++++|..++. -..+...+...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~Lt~~~~~~--- 292 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGT----TTRLTDSPAID--- 292 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCc----eEEccCCCCcc---
Confidence 5789999999988887655543222222222345655433221 2467888998888 77665433111
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W 318 (387)
......-||+ |++..... ..++.+|..++..+.+... ......+.....|+.|++..... ..++.+|++++..
T Consensus 293 -~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 293 -TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred -CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 0122233554 44443222 5688889887776665431 11111222223455666554322 3689999987766
Q ss_pred eEccccccccCceEEEEeCCeEEEE-ecC-C----CeEEEEeccCC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAV-CEN-G----GGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~-gg~-~----~~i~~~d~~~~ 358 (387)
+.+..... .......-+|+.+++ ... + ..++++|.++.
T Consensus 371 ~~lt~~~~--~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSGFL--VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCCCC--CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 55543211 112223445554444 321 1 46888888754
No 119
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.26 E-value=0.023 Score=51.32 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHhhhcC--------chhhhhhhHhhhhhhcCCCCCceeeE
Q 016552 43 LPGLPDHIAHLCLSHVH--------PSILHNVCHSWRRLIYSPSFPPFLSL 85 (387)
Q Consensus 43 ~~~LPddl~~~iL~rLP--------l~~~r~VcK~W~~li~~~~f~~~~~l 85 (387)
|..|||||+.+||.++= +.++.+|||.|.-.+.+|+|.+..|+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 57899999999998753 78999999999999999999655443
No 120
>PRK13684 Ycf48-like protein; Provisional
Probab=94.21 E-value=5 Score=37.72 Aligned_cols=170 Identities=11% Similarity=0.055 Sum_probs=86.6
Q ss_pred cEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEE-EEECCCCccccCeEEcCCCCCCCcccc
Q 016552 166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVE-KWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~-~yd~~~~~~~~~W~~~~~~p~~~~~~~ 244 (387)
+++=+-.-++|+++.... .-.........+..|++.|... .+. ..|....+ |..+.......
T Consensus 154 i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~t----W~~~~~~~~~~---- 216 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTA----WTPHQRNSSRR---- 216 (334)
T ss_pred EEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCe----EEEeeCCCccc----
Confidence 444444567999875432 2233333333444444444322 111 12344456 99886422111
Q ss_pred ceEE-EEECCEEEEEeeeCCeEEEEE-C-CCCceeecccccc-cCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCcee
Q 016552 245 AIDA-VGWKGKLCLVNVKGAEGAVYD-V-VANTWDDMREGMV-RGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWK 319 (387)
Q Consensus 245 ~~~~-~~~~g~lyv~gg~~~~i~~yD-~-~~~~W~~~~~~~~-~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~ 319 (387)
.... ..-++++++++..+ ...+. . .-.+|+.+..... .......+++. ++.+|+.+. .|.++.-.....+|+
T Consensus 217 l~~i~~~~~g~~~~vg~~G--~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~ 293 (334)
T PRK13684 217 LQSMGFQPDGNLWMLARGG--QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWE 293 (334)
T ss_pred ceeeeEcCCCCEEEEecCC--EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCe
Confidence 1222 23467888886644 33342 2 2348997653111 11112233333 567877764 566666566678999
Q ss_pred Eccccccc-cCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552 320 EVVKSDLL-KGARHAAAG-GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 320 ~v~~~~~~-~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~ 356 (387)
.+...... .....++.. +++++++ |..+.|+.++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 294 KDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS 331 (334)
T ss_pred ECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence 97643222 233444544 5667666 666667777765
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.06 E-value=6 Score=38.13 Aligned_cols=176 Identities=11% Similarity=0.001 Sum_probs=89.6
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|..+++-..+..........+....+.+|++....+. ...+..+|..++. ...+........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~----~~~l~~~~~~~~-- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQ----LTRLTNGPGIDT-- 281 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC------CccEEEEECCCCC----EEECCCCCCCCC--
Confidence 4689999998877766554432222222122335665543222 2367888998887 776654332111
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W 318 (387)
.....-+|+ |++..... ..++.+|..++.+..+.... .....+.....+..|++..... ..|+.||.+++.+
T Consensus 282 --~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 282 --EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred --CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 111222554 54443332 47888999888877664311 1111122222233444443322 2799999998777
Q ss_pred eEccccccccCceEEEEeCCeEEEEec-C-C-CeEEEEecc
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCE-N-G-GGIVVVDVK 356 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg-~-~-~~i~~~d~~ 356 (387)
+.+....... ......+|+.+++.. . + ..+++++..
T Consensus 359 ~~l~~~~~~~--~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 359 RVLTDTGLDE--SPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEccCCCCCC--CceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 6665422111 113344555444432 2 2 345555554
No 122
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.03 E-value=2.7 Score=39.68 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=101.8
Q ss_pred cEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552 166 PLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~ 244 (387)
+..+|..|+.-+.+-+-...-+..+++ ..++.-+|+|+.+. .+..+|..-+..+ .|+-+.. ++..
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr--------~i~~wdlDgn~~~-~W~gvr~---~~v~-- 358 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR--------TIIMWDLDGNILG-NWEGVRD---PKVH-- 358 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC--------cEEEecCCcchhh-ccccccc---ceeE--
Confidence 566676666544432211122222223 23666788887654 5566666544322 2876652 2221
Q ss_pred ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccc
Q 016552 245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVK 323 (387)
Q Consensus 245 ~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~ 323 (387)
..++..||+-.+.-+.+..+..|+.++..=..+-. ...+ ..+..+ .++++.++.-...++..||.+ .|+.+..
T Consensus 359 -dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~--its~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~k 432 (519)
T KOG0293|consen 359 -DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQP--ITSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRK 432 (519)
T ss_pred -EEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCc--eeEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHH
Confidence 34556788744333444678888887764332111 0111 122232 366888887777789999998 5666554
Q ss_pred ccc-ccCce---EEEEeCC-eEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCceeEEEEEccC
Q 016552 324 SDL-LKGAR---HAAAGGG-RVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHIMPR 382 (387)
Q Consensus 324 ~~~-~~~~~---~~~~~~g-~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~~~ 382 (387)
... -++.+ .|..-.+ +.++-|.....|++++..++ .=-. ...+.=..-+|+++|.
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg----kll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG----KLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC----ceeEeecCCcceeeEEecCCC
Confidence 322 22322 2233333 44444445688999988865 2222 2222235567777775
No 123
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.93 E-value=5.3 Score=37.08 Aligned_cols=146 Identities=10% Similarity=0.131 Sum_probs=81.4
Q ss_pred CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc--ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR--WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 223 (387)
+..+.+.||.+. ..++++..+..|-- .++.... .+..-..++.+.+.|+... .+.+++..+
T Consensus 75 ~~~l~aTGGgDD-------~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG--------~v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGDD-------LAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG--------KVLVFKVST 137 (399)
T ss_pred CCceEEecCCCc-------eEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc--------cEEEEEccc
Confidence 456777887533 46899998888532 2333322 2233345677777777655 677777777
Q ss_pred CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC
Q 016552 224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE 303 (387)
Q Consensus 224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~ 303 (387)
+... |.....+..-.+-+. | --+.+.+.|..+..+++|...++.=.++-.+.... ....-.+.+|+..+.+.
T Consensus 138 g~~~--~~~~~e~~dieWl~W-H----p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 138 GGEQ--WKLDQEVEDIEWLKW-H----PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP-CTCGEFIPDGKRILTGY 209 (399)
T ss_pred CceE--EEeecccCceEEEEe-c----ccccEEEeecCCCcEEEEECCCcceeeEecCCCCC-cccccccCCCceEEEEe
Confidence 6644 665422211101000 1 02345566655577888877765322222211111 11122244577777777
Q ss_pred CCCeEEEEeCCCC
Q 016552 304 NSCTLSRYDEVMD 316 (387)
Q Consensus 304 ~~~~l~~yd~~~~ 316 (387)
.++.|.+||+++.
T Consensus 210 ~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 210 DDGTIIVWNPKTG 222 (399)
T ss_pred cCceEEEEecCCC
Confidence 7899999999987
No 124
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.92 E-value=4.1 Score=35.69 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=76.3
Q ss_pred ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552 165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~ 244 (387)
.+-.+||....--+--.-......-++...++.=+..||.+. .+.++|..|++ =...- . -...
T Consensus 40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk--------~v~vwDV~TGk----v~Rr~--r---gH~a 102 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK--------AVQVWDVNTGK----VDRRF--R---GHLA 102 (307)
T ss_pred eEEeecccccceeeeecCCCceeeeccccccccccccCCCCc--------eEEEEEcccCe----eeeec--c---cccc
Confidence 456677776654432111111111123334444455555443 77899999998 11110 0 0001
Q ss_pred ceEEEEECC--EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 245 AIDAVGWKG--KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 245 ~~~~~~~~g--~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
...++.+|. .+.+-|+.+..+.++|=.++.-+.++. +.....+...+...+...+-|..+|.+..||+..+
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-hhhhcCceeEEEecccEEEeeccCCcEEEEEeecc
Confidence 123455554 355666677889999999888887765 44444444445555677777777899999998665
No 125
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.90 E-value=7.1 Score=38.36 Aligned_cols=180 Identities=15% Similarity=-0.029 Sum_probs=90.4
Q ss_pred CCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 163 ~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
...+++.|.....-+.+...+.+-.......-+.+|+...-. . ....++++|..+++ -..+...+....
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~-~-----g~~~L~~~dl~tg~----~~~lt~~~g~~~- 265 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE-N-----RKAEIFVQDIYTQV----REKVTSFPGING- 265 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEec-C-----CCcEEEEEECCCCC----eEEecCCCCCcC-
Confidence 356777777655444443222211111122223345433211 1 12468889998887 666654432211
Q ss_pred ccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCc
Q 016552 243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDD 317 (387)
Q Consensus 243 ~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~ 317 (387)
.....-||+ |++..... ..++.+|+++++.+.+..... ....+.-...+..|++..... ..++.+|.++++
T Consensus 266 ---~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 266 ---APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred ---CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 112223554 54443322 468899999988877654211 111222222344566554322 369999999998
Q ss_pred eeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552 318 WKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 318 W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~ 358 (387)
++.+......... ....-+|+ |++.+.. ...|+++|+.++
T Consensus 342 ~~~Lt~~g~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 342 VSRLTFEGEQNLG-GSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EEEEecCCCCCcC-eeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8877522111111 12344544 4444332 346788888754
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.89 E-value=3.6 Score=39.77 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=63.8
Q ss_pred CeEEEEECCCC----ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCC
Q 016552 263 AEGAVYDVVAN----TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG 338 (387)
Q Consensus 263 ~~i~~yD~~~~----~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g 338 (387)
..+..||.... .|.+.-..+. .+.+....+..|++--|-+.+|..||.....-..--.-. ..-......-+|
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~---~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G 262 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPC---RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-HPLSTVAFSECG 262 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCc---CcceecCCccceEEEecccceEEEeecccccccceeeec-CCcceeeecCCc
Confidence 46777887654 3544432111 123333456677776667889999998755322211100 111222334467
Q ss_pred eEEEEecCCCeEEEEeccCCCCCCceEE--eCCCCceeEEEEEccC
Q 016552 339 RVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGFEALSVHIMPR 382 (387)
Q Consensus 339 ~i~v~gg~~~~i~~~d~~~~~~~~~W~~--~~p~~~~~~~~~~~~~ 382 (387)
.++++|...+.++.||+...+++= .+ ........+++++.|.
T Consensus 263 ~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~vafq~s~t 306 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVAFQPSPT 306 (673)
T ss_pred eEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEEeeecce
Confidence 888887778999999999653331 11 1122356667777663
No 127
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=93.76 E-value=4.2 Score=36.61 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=47.7
Q ss_pred CCCCCCCCcceeEEEe--CC--EEEEEecCCCCCCC-----------CCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 179 GPELVTPRRWCAAGCS--RG--AVYVASGIGSQFSS-----------DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 179 l~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~-----------~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
+...|.+|+.|+..++ .| ...++||....-.. +....|...|++-+- .+.- .+|.-.-..
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC----~tah-~lpEl~dG~ 155 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGC----CTAH-TLPELQDGQ 155 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccc----cccc-cchhhcCCe
Confidence 4678999998887665 33 35778887432100 112345566776665 4322 233332333
Q ss_pred cceEEEEECCEEEEEeeeC
Q 016552 244 EAIDAVGWKGKLCLVNVKG 262 (387)
Q Consensus 244 ~~~~~~~~~g~lyv~gg~~ 262 (387)
..|.+.+-++.+|++||+.
T Consensus 156 SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 156 SFHVSLARNDCVYILGGHS 174 (337)
T ss_pred EEEEEEecCceEEEEccEE
Confidence 3477888899999999964
No 128
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.60 E-value=4.9 Score=35.52 Aligned_cols=171 Identities=11% Similarity=0.054 Sum_probs=87.1
Q ss_pred ccEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 165 RPLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
.+-.||..++.=..+...-.++...+++ -.+|+-...||.+. ++.++|...-. -...-..+.+
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~----~qR~~~~~sp--- 126 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLS----CQRNYQHNSP--- 126 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcc----cchhccCCCC---
Confidence 5678888777533222222333333333 34678777777755 66777766544 2222222211
Q ss_pred ccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccC-CCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552 243 REAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRG-WRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 243 ~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~-~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
...+++ .+.|++- .....|.+.|+.++....... |+. ....+++ ..+|.+.+-..+.|.+++|+.-++.
T Consensus 127 ---Vn~vvlhpnQteLis~-dqsg~irvWDl~~~~c~~~li--Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 127 ---VNTVVLHPNQTELISG-DQSGNIRVWDLGENSCTHELI--PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred ---cceEEecCCcceEEee-cCCCcEEEEEccCCccccccC--CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 223333 2344332 223689999999997654432 222 1222333 3456655555556889999986632
Q ss_pred ee-Eccccccc--cC---ceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 318 WK-EVVKSDLL--KG---ARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 318 W~-~v~~~~~~--~~---~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
-. ++.+.... .. .-+...-+++.+...+....+.+++.+
T Consensus 201 ~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 201 TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 11 11111111 11 133344566666666666666666555
No 129
>PRK13684 Ycf48-like protein; Provisional
Probab=93.60 E-value=6.5 Score=36.96 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=63.4
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEE-eCCCCceeEccccccccCc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRY-DEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~y-d~~~~~W~~v~~~~~~~~~ 330 (387)
++.+|+.+..+ .++.=+-.-.+|+.+.... .+ ....+....+..|++.+..|.++.- |....+|+.+.......-.
T Consensus 142 ~~~~~~~g~~G-~i~~S~DgG~tW~~~~~~~-~g-~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~ 218 (334)
T PRK13684 142 PGTAEMATNVG-AIYRTTDGGKNWEALVEDA-AG-VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ 218 (334)
T ss_pred CCcceeeeccc-eEEEECCCCCCceeCcCCC-cc-eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce
Confidence 34566665443 3444333456999886532 22 1122333333345554456666654 5566789987553222212
Q ss_pred eEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCC---CCceeEEEEEcc
Q 016552 331 RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTP---LGFEALSVHIMP 381 (387)
Q Consensus 331 ~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p---~~~~~~~~~~~~ 381 (387)
.....-+++++++|.+| .+ ++. +...+..|+. ..| ..+.+..+++.|
T Consensus 219 ~i~~~~~g~~~~vg~~G-~~-~~~--s~d~G~sW~~~~~~~~~~~~~l~~v~~~~ 269 (334)
T PRK13684 219 SMGFQPDGNLWMLARGG-QI-RFN--DPDDLESWSKPIIPEITNGYGYLDLAYRT 269 (334)
T ss_pred eeeEcCCCCEEEEecCC-EE-EEc--cCCCCCccccccCCccccccceeeEEEcC
Confidence 22233468888886544 23 232 1234468995 555 335566666554
No 130
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.57 E-value=7.7 Score=37.73 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=72.8
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEee-eC-CeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..++++|..+++ -..+...+.... .....-||+ |++... .+ ..++++|+.++..+.+.... .....+.
T Consensus 223 ~~l~~~~l~~g~----~~~l~~~~g~~~----~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~ 293 (430)
T PRK00178 223 PRIFVQNLDTGR----REQITNFEGLNG----APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPF 293 (430)
T ss_pred CEEEEEECCCCC----EEEccCCCCCcC----CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeE
Confidence 478899999888 776654432110 112223554 443322 22 57899999999887665321 1111222
Q ss_pred EEEeCCeEEEEeCCC--CeEEEEeCCCCceeEccccccccCceEEEEeCC-eEEEEecC--CCeEEEEeccCC
Q 016552 291 AAMDEEVLYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g-~i~v~gg~--~~~i~~~d~~~~ 358 (387)
....+.+|++..... ..|+.+|.+++.++.+....... .......+| .|++.... ...++++|..++
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN-ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 222345666665433 36999999988887765322111 111223344 45444332 246888888754
No 131
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.51 E-value=9.9 Score=38.83 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=84.6
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCe
Q 016552 185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAE 264 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~ 264 (387)
.|..+....-+|.+.+.|+.+. .|.+||...+- -...-.-+. .. -........|+..+...-+..
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDg--------KVKvWn~~Sgf----C~vTFteHt--s~-Vt~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDG--------KVKVWNTQSGF----CFVTFTEHT--SG-VTAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred cceeeEEECCCCcEEEeccCCC--------cEEEEeccCce----EEEEeccCC--Cc-eEEEEEEecCCEEEEeecCCe
Confidence 3444444455788888888765 77888777654 222211111 11 001122335555444443457
Q ss_pred EEEEECCCCc-eeecccccccCCCCcEEEEe-CCeEEEEeCC-CCeEEEEeCCCCceeEccccccccCceE--EEEeCCe
Q 016552 265 GAVYDVVANT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDEN-SCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGR 339 (387)
Q Consensus 265 i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~-~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~ 339 (387)
+-++|+.... .++... |.+....++++. .|.|.+.|.. .-.|++|+.+|+.-..+-. ..-++.. +....+.
T Consensus 416 VRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGS 491 (893)
T ss_pred EEeeeecccceeeeecC--CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccC
Confidence 8888887552 444332 333334444443 2677777653 3369999999985544332 2222222 3455667
Q ss_pred EEEEecCCCeEEEEeccC
Q 016552 340 VCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 340 i~v~gg~~~~i~~~d~~~ 357 (387)
++.-|.....|-+||+-.
T Consensus 492 ~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFS 509 (893)
T ss_pred eEEeccccceEEEEEeec
Confidence 777766677788888874
No 132
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.49 E-value=3.6 Score=36.89 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=87.2
Q ss_pred ceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCcee---eCCCCCCC---------CcceeEEEeCCEEEEEecCCC
Q 016552 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT---FGPELVTP---------RRWCAAGCSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~---~l~~~p~~---------r~~~~~~~~~~~iyv~GG~~~ 206 (387)
|-+-++.+|.+|.--. ..+.+..||..+++-. .||..... -...-.++.++-|+|+=....
T Consensus 71 GtG~vVYngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~ 143 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED 143 (250)
T ss_pred cCCeEEECCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC
Confidence 4556667777777532 3467999999998654 45432211 123445666677877744433
Q ss_pred CCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 016552 207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM 282 (387)
Q Consensus 207 ~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~ 282 (387)
.. +. -.+-..|+.+=...-.|..- .+.... ..+.++-|.||++.... .-..+||+.+++=..+.-.+
T Consensus 144 ~~-g~--ivvskld~~tL~v~~tw~T~--~~k~~~----~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f 214 (250)
T PF02191_consen 144 NN-GN--IVVSKLDPETLSVEQTWNTS--YPKRSA----GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPF 214 (250)
T ss_pred CC-Cc--EEEEeeCcccCceEEEEEec--cCchhh----cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeee
Confidence 11 10 12233344322211127743 232222 33566679999997654 34578999988655444323
Q ss_pred ccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 016552 283 VRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEV 314 (387)
Q Consensus 283 ~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~ 314 (387)
+......+.. -.+.+||+.+ +|.+..|+..
T Consensus 215 ~~~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v~ 247 (250)
T PF02191_consen 215 PNPYGNISMLSYNPRDKKLYAWD--NGYQVTYDVR 247 (250)
T ss_pred ccccCceEeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence 3332233333 2367899885 6778888764
No 133
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.40 E-value=5.3 Score=35.31 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=75.2
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccc--cc--eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcE
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSR--EA--IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~--~~--~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
.+..||..++. +.|...+.. .+ ..+..++|+....|+.+..+-+.|+..-.-...- ........
T Consensus 62 hvRlyD~~S~n---------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~---~~~spVn~ 129 (311)
T KOG0315|consen 62 HVRLYDLNSNN---------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY---QHNSPVNT 129 (311)
T ss_pred eeEEEEccCCC---------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc---cCCCCcce
Confidence 57889998887 222221211 11 2234568997778887778888888773322211 11111234
Q ss_pred EEEeC--CeEEEEeCCCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 291 AAMDE--EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~--~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
++.+- +.|++ +..+|.|++||..++.-.....+.... -....+..+|+.++.+-+.+..++++.-+.
T Consensus 130 vvlhpnQteLis-~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 130 VVLHPNQTELIS-GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred EEecCCcceEEe-ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 44432 34443 335789999999999766544332222 123334556776666556678889888754
No 134
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.21 E-value=8.9 Score=37.42 Aligned_cols=180 Identities=13% Similarity=0.016 Sum_probs=89.2
Q ss_pred CCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 163 ~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
...+++.|.....=+.+..-..+-..+....-+.+|+...-. . ....++++|+.+++ ...+...+....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~-~-----g~~~i~~~dl~~g~----~~~l~~~~g~~~- 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYA-N-----GRPRVYLLDLETGQ----RELVGNFPGMTF- 249 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEec-C-----CCCEEEEEECCCCc----EEEeecCCCccc-
Confidence 467888887655444443221111111111223345333211 1 12478999999988 777765443211
Q ss_pred ccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCc
Q 016552 243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDD 317 (387)
Q Consensus 243 ~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~ 317 (387)
.....-||+ |++..... ..++.+|++++.-..+..... ....+...-.+.+|++..... ..|+.+|.++..
T Consensus 250 ---~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 250 ---APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred ---CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 112233564 44333222 568888998887766643211 111222223344565544322 369999988877
Q ss_pred eeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552 318 WKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 318 W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~ 358 (387)
.+.+.......... ...-+|+ |++.... ...++++|..++
T Consensus 326 ~~~lt~~~~~~~~~-~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 326 PRRISFGGGRYSTP-VWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred eEEeecCCCcccCe-EECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 76665322111112 2333444 4444322 256888887543
No 135
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.11 E-value=8.7 Score=37.02 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=63.2
Q ss_pred EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-----ceeecccccccCCCCcEEE-
Q 016552 219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-----TWDDMREGMVRGWRGPVAA- 292 (387)
Q Consensus 219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-----~W~~~~~~~~~~~~~~~~~- 292 (387)
.|..... |..+..-...... ......+|.+++++..+ .+..-+-... +|.+++.. .....-..++
T Consensus 265 ~d~G~~~----W~~~~~~~~~~l~---~v~~~~dg~l~l~g~~G-~l~~S~d~G~~~~~~~f~~~~~~-~~~~~l~~v~~ 335 (398)
T PLN00033 265 WEPGQPY----WQPHNRASARRIQ---NMGWRADGGLWLLTRGG-GLYVSKGTGLTEEDFDFEEADIK-SRGFGILDVGY 335 (398)
T ss_pred cCCCCcc----eEEecCCCcccee---eeeEcCCCCEEEEeCCc-eEEEecCCCCcccccceeecccC-CCCcceEEEEE
Confidence 4455555 8887733322211 22234578888877554 3333333333 45554431 1111112222
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCc-eEEE-EeCCeEEEEecCC
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGA-RHAA-AGGGRVCAVCENG 347 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~-~~~~-~~~g~i~v~gg~~ 347 (387)
..++.+++.|. .|.++.-....++|+.+......... +.+. .-+++.|++|.+|
T Consensus 336 ~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 336 RSKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDG 391 (398)
T ss_pred cCCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCc
Confidence 34667877764 67788888888999997643333332 3344 3447899885433
No 136
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.01 E-value=3.4 Score=38.48 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=37.2
Q ss_pred eCCeEEEEeCC---------CCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEE--EecCCCeEEEEeccCC
Q 016552 294 DEEVLYGIDEN---------SCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCA--VCENGGGIVVVDVKAA 358 (387)
Q Consensus 294 ~~~~ly~~~~~---------~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v--~gg~~~~i~~~d~~~~ 358 (387)
..++||++-.. ..+||+||+++.+ .+...+... .....+.-+++-++ +...+..+++||..++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 36799997421 1259999999984 344333211 11223445666444 4456688999999976
No 137
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=92.99 E-value=6.8 Score=35.42 Aligned_cols=176 Identities=10% Similarity=0.056 Sum_probs=85.5
Q ss_pred cEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccc
Q 016552 166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA 245 (387)
Q Consensus 166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~ 245 (387)
+.++|..|-.=...-|||..-....+-.-.++....||.++ ..-+|+..+..... =..+...-..... ..
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN--------~Csiy~ls~~d~~g-~~~v~r~l~gHtg-yl 148 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN--------KCSIYPLSTRDAEG-NVRVSRELAGHTG-YL 148 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--------eeEEEecccccccc-cceeeeeecCccc-ee
Confidence 44455443222222234433322223333567778888866 56789888653100 1111111111110 00
Q ss_pred eEEEEEC-CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552 246 IDAVGWK-GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSRYDEVMDDWKE 320 (387)
Q Consensus 246 ~~~~~~~-g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~~~~~ly~~~~~~~~l~~yd~~~~~W~~ 320 (387)
.++-.++ +.|.--.|. ...-..|.++++=...-. +..+..++ -.+++.|+-|+.+..-+.||..... -
T Consensus 149 ScC~f~dD~~ilT~SGD-~TCalWDie~g~~~~~f~----GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--c 221 (343)
T KOG0286|consen 149 SCCRFLDDNHILTGSGD-MTCALWDIETGQQTQVFH----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--C 221 (343)
T ss_pred EEEEEcCCCceEecCCC-ceEEEEEcccceEEEEec----CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--e
Confidence 1122333 333322232 466778888876433221 11122111 2267889988888888999987762 3
Q ss_pred ccccccccC--ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 321 VVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 321 v~~~~~~~~--~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
++..+.... +.....-+|.-+..|......-+||+...
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 333333222 23333446667777666666666776643
No 138
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.98 E-value=0.9 Score=36.09 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=51.1
Q ss_pred eCCeEEEEeCC----CCeEEEEeCCCCceeEcccc--c-cccCceEEEEeCCeEEEEecCC------CeEEEEeccCCCC
Q 016552 294 DEEVLYGIDEN----SCTLSRYDEVMDDWKEVVKS--D-LLKGARHAAAGGGRVCAVCENG------GGIVVVDVKAAAA 360 (387)
Q Consensus 294 ~~~~ly~~~~~----~~~l~~yd~~~~~W~~v~~~--~-~~~~~~~~~~~~g~i~v~gg~~------~~i~~~d~~~~~~ 360 (387)
.+|-||.+... ...|.+||.++.+|+.+..+ + .......++.++|+|.++.... -++++++-..+
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k-- 81 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK-- 81 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--
Confidence 46788888653 34699999999999988875 2 2345688899999999986532 47888864433
Q ss_pred CCceEE
Q 016552 361 PTIFVV 366 (387)
Q Consensus 361 ~~~W~~ 366 (387)
++|..
T Consensus 82 -~~Wsk 86 (129)
T PF08268_consen 82 -QEWSK 86 (129)
T ss_pred -ceEEE
Confidence 47883
No 139
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.75 E-value=9.8 Score=36.65 Aligned_cols=135 Identities=15% Similarity=0.086 Sum_probs=72.8
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..+.++|..++. -..+...+.... .....-||+ |++..... ..++.+|+.++....+.... .....+.
T Consensus 214 ~~i~v~d~~~g~----~~~~~~~~~~~~----~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~ 284 (417)
T TIGR02800 214 PEIYVQDLATGQ----REKVASFPGMNG----APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPS 284 (417)
T ss_pred cEEEEEECCCCC----EEEeecCCCCcc----ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEE
Confidence 478899999887 665554332211 112233554 55443222 56899999988776664311 1111122
Q ss_pred EEEeCCeEEEEeCCC--CeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC---CeEEEEeccCC
Q 016552 291 AAMDEEVLYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG---GGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~---~~i~~~d~~~~ 358 (387)
....+.+|++..... ..|+.+|.++..++.+........ ......+|+.++++... ..++++|+.+.
T Consensus 285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~-~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA-SPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc-CeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 122344565554332 369999999888776653221111 11233455555554432 47889998864
No 140
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=92.69 E-value=2.5 Score=38.01 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=47.9
Q ss_pred cccceEEEEE--CCE--EEEEecccCC--C------CC----CCCccEEEeccCCcee--eCCCCCCCCcceeEEEeCCE
Q 016552 136 RNLPVQLVSL--SGK--LILLAATTHN--F------NP----ALTRPLIFDPICRTWT--FGPELVTPRRWCAAGCSRGA 197 (387)
Q Consensus 136 ~~~~~~~~~~--~~~--l~v~GG~~~~--~------~~----~~~~~~vyd~~t~~W~--~l~~~p~~r~~~~~~~~~~~ 197 (387)
+|+||.+.++ .|+ .++|||...- . +. ..-.|+..|+.-+-.. .+|.+...-++|.+.+-++.
T Consensus 87 aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~ 166 (337)
T PF03089_consen 87 ARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDC 166 (337)
T ss_pred ccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCce
Confidence 3888876654 333 6778886531 0 11 1234566787766544 47777778888988899999
Q ss_pred EEEEecCCC
Q 016552 198 VYVASGIGS 206 (387)
Q Consensus 198 iyv~GG~~~ 206 (387)
||++||...
T Consensus 167 VYilGGHsl 175 (337)
T PF03089_consen 167 VYILGGHSL 175 (337)
T ss_pred EEEEccEEc
Confidence 999999855
No 141
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.50 E-value=4.6 Score=36.61 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=67.7
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCe---EEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV---LYGIDENSCTLSRYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~---ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~ 328 (387)
+|...+.++.+..+..+|+.+++=..+...-. + ..++-..++. +.+.|..+.+|.-||+... ..+..+..+
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~-p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LP- 156 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA-P--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLP- 156 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeeccc-c--eeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeecc-
Confidence 45555566666789999999998777653211 1 1122223333 3344555677888888643 222222222
Q ss_pred CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCceeEEEEEc
Q 016552 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHIM 380 (387)
Q Consensus 329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~ 380 (387)
...-++-+...+.+++-.+..|.+|++.+. +.+.+. ..|..|+..+++.-
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~--~te~k~~~SpLk~Q~R~va~f 207 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENP--PTEFKRIESPLKWQTRCVACF 207 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCC--cchhhhhcCcccceeeEEEEE
Confidence 222233344456666666777888888633 234443 55666666666553
No 142
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=92.44 E-value=5.7 Score=36.52 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=58.1
Q ss_pred EEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecC--------------------CCe
Q 016552 290 VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--------------------GGG 349 (387)
Q Consensus 290 ~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~--------------------~~~ 349 (387)
+.-.++|+||+.+...+++..+|++++..+.+...|...... .-. |.+.++|-. .-+
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL--~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG 283 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGL--AFA-GDFAFVGLSKLRESRVFGGLPIEERLDALGCG 283 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccc--cee-CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence 344678999999988899999999999999998777544322 222 677777631 125
Q ss_pred EEEEeccCCCCCCceEE-eCCCCceeEEEEEccCC
Q 016552 350 IVVVDVKAAAAPTIFVV-DTPLGFEALSVHIMPRM 383 (387)
Q Consensus 350 i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~~~~ 383 (387)
++++|+.++.-. .|-. .-.- -|+-.|+++|-+
T Consensus 284 v~vidl~tG~vv-~~l~feg~v-~EifdV~vLPg~ 316 (335)
T TIGR03032 284 VAVIDLNSGDVV-HWLRFEGVI-EEIYDVAVLPGV 316 (335)
T ss_pred EEEEECCCCCEE-EEEEeCCce-eEEEEEEEecCC
Confidence 778888765111 1332 2222 267777777765
No 143
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=92.39 E-value=3.5 Score=36.28 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred eEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE--eCCeEEEEeCC
Q 016552 230 WEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDEN 304 (387)
Q Consensus 230 W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~~ 304 (387)
|+...|+...........+..+ .|.+++.||.+ .++..|+++++-+..-.+..+- .++++. .++++ +-|++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtDY--vH~vv~R~~~~qi-lsG~E 176 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYRGHTDY--VHSVVGRNANGQI-LSGAE 176 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEcCCcce--eeeeeecccCcce-eecCC
Confidence 8877766543211111223333 47788888765 7888999999876543322211 233443 23343 44567
Q ss_pred CCeEEEEeCCCCceeEcccc---c-ccc---Cc-eEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552 305 SCTLSRYDEVMDDWKEVVKS---D-LLK---GA-RHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 305 ~~~l~~yd~~~~~W~~v~~~---~-~~~---~~-~~~~~~~g~i~v~gg~~~~i~~~d~~~ 357 (387)
+|.+.+||.++.+=..+-.. | ..| +. ..+.+. +.=+++.|+|..+.++....
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-~edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-NEDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-cCceEEecCCCceeEEeccC
Confidence 89999999999876654332 1 122 12 223333 34455556665565555543
No 144
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.30 E-value=12 Score=36.54 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=71.9
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeee-C-CeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVK-G-AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~-~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..+.++|..+++ -..+...+.... .....-||+ |++.... + ..++.+|+.++.-+.+..... ....+.
T Consensus 228 ~~l~~~dl~~g~----~~~l~~~~g~~~----~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~ 298 (433)
T PRK04922 228 SAIYVQDLATGQ----RELVASFRGING----APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG-IDTEPT 298 (433)
T ss_pred cEEEEEECCCCC----EEEeccCCCCcc----CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC-CccceE
Confidence 468889998888 776665442211 112233554 5443222 2 479999999887665543211 111222
Q ss_pred EEEeCCeEEEEeCCCC--eEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552 291 AAMDEEVLYGIDENSC--TLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~ 358 (387)
..-.+..|++.....+ .++.+|.+++..+.+.......... ....+|+ |++..+. ...++++|..++
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~-~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA-SVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE-EECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 2223445655543333 5899999888877765322111122 2333444 5444332 246888888754
No 145
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.18 E-value=7.6 Score=34.06 Aligned_cols=197 Identities=10% Similarity=0.051 Sum_probs=101.5
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeC--CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~ 241 (387)
+.+.+||..|++--+- +...-...-++.+| ..+.+-|+.+. ++.++|-..+. -+.+.-+-..
T Consensus 81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD~--------s~r~wDCRS~s----~ePiQildea-- 144 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFDS--------SVRLWDCRSRS----FEPIQILDEA-- 144 (307)
T ss_pred ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEeccccc--------eeEEEEcccCC----CCccchhhhh--
Confidence 4689999999865431 11111111223333 35666666544 77889998888 6655544332
Q ss_pred cccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552 242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKE 320 (387)
Q Consensus 242 ~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~ 320 (387)
.+...++.+.+...+.|..+..+-.||...++-..-- +..+ ..++.+ .++...+.+.-++.+...|-++++--.
T Consensus 145 -~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~p--it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 145 -KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHP--ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred -cCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--cCCc--ceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 3446677777877777766678999998877643211 2222 122222 233444444345567778877764322
Q ss_pred cc-ccccccCceEEEEeCCeEEEEec-CCCeEEEEeccCCCCCCceEEeCCCCceeEEEEEccCC
Q 016552 321 VV-KSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRM 383 (387)
Q Consensus 321 v~-~~~~~~~~~~~~~~~g~i~v~gg-~~~~i~~~d~~~~~~~~~W~~~~p~~~~~~~~~~~~~~ 383 (387)
.- .........-+...+..-.|++| ..+.+++||..... +.=....+..-....+.+-|+|
T Consensus 220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCceeEEeeecccCc
Confidence 11 11111111222223333445544 46788999988541 0011133333344555555555
No 146
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.17 E-value=9.2 Score=40.19 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=67.2
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC-c----cccc---------------eEE
Q 016552 189 CAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-F----SREA---------------IDA 248 (387)
Q Consensus 189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~-~----~~~~---------------~~~ 248 (387)
....+++++||+... .+.+.++|..|++.. |+.-+..+... . +|.. ...
T Consensus 188 ~TPlvvgg~lYv~t~---------~~~V~ALDa~TGk~l--W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p 256 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP---------HNKVIALDAATGKEK--WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAP 256 (764)
T ss_pred cCCEEECCEEEEECC---------CCeEEEEECCCCcEE--EEEcCCCCcccccccccccceEEecCCcccccccccccc
Confidence 445678999999743 236788899888866 88665443211 0 0000 001
Q ss_pred EEECCEEEEEeeeCCeEEEEECCCCc--eeecc-------ccc---ccCC--CCcEEEEeCCeEEEEeC---------CC
Q 016552 249 VGWKGKLCLVNVKGAEGAVYDVVANT--WDDMR-------EGM---VRGW--RGPVAAMDEEVLYGIDE---------NS 305 (387)
Q Consensus 249 ~~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~-------~~~---~~~~--~~~~~~~~~~~ly~~~~---------~~ 305 (387)
+.++++||+.... ..+.++|.++++ |..-. ..+ +.+. ...+.++.++.+|+-+. ..
T Consensus 257 ~~~~~rV~~~T~D-g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 257 ADCARRIILPTSD-ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred cccCCEEEEecCC-CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence 2355677765443 478888888774 64211 111 1111 12334556777766321 14
Q ss_pred CeEEEEeCCCC--ceeE
Q 016552 306 CTLSRYDEVMD--DWKE 320 (387)
Q Consensus 306 ~~l~~yd~~~~--~W~~ 320 (387)
|.|.+||.+++ .|+-
T Consensus 336 G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAW 352 (764)
T ss_pred cEEEEEECCCCcEeeEE
Confidence 67999999887 4664
No 147
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=91.68 E-value=13 Score=35.69 Aligned_cols=198 Identities=13% Similarity=0.024 Sum_probs=94.5
Q ss_pred eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcc-eeEEEeCCEEEEEecCCCCCCCCCcceEEE
Q 016552 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGCSRGAVYVASGIGSQFSSDVAKSVEK 218 (387)
Q Consensus 140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 218 (387)
.+.+..+...|++||.-. ..+|++...|+.--..- +...+.. +-....||+.++.||.+. .|.+
T Consensus 85 ~al~s~n~G~~l~ag~i~------g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg--------~V~v 149 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTIS------GNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDG--------AVLV 149 (476)
T ss_pred eeeecCCCceEEEeeccc------CcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCc--------cEEE
Confidence 345556667788877322 35788888776532211 1112221 112234678888888765 3444
Q ss_pred EECCCCccccCeEEcCCCCCCCccccceE-------EEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE
Q 016552 219 WDLMNGEKNSRWEKTGELKDGRFSREAID-------AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~-------~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
|+..+---. -..-.+.|...+..+... ....+.++|-.+-. ..+-+||+..+.--.--. .|. .-.++
T Consensus 150 W~l~~lv~a--~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LLlti~-fp~--si~av 223 (476)
T KOG0646|consen 150 WLLTDLVSA--DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLLLTIT-FPS--SIKAV 223 (476)
T ss_pred EEEEeeccc--ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC-ceEEEEEeccceeeEEEe-cCC--cceeE
Confidence 322110000 000011111112111100 11134567655433 578889988874321111 121 12233
Q ss_pred EEe-CCeEEEEeCCCCeEEEEeCCCCceeEc--------------cccccccC----ceEEEEeCCeEEEEecCCCeEEE
Q 016552 292 AMD-EEVLYGIDENSCTLSRYDEVMDDWKEV--------------VKSDLLKG----ARHAAAGGGRVCAVCENGGGIVV 352 (387)
Q Consensus 292 ~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v--------------~~~~~~~~----~~~~~~~~g~i~v~gg~~~~i~~ 352 (387)
++. .++.+.+|.+.|.++..+..+-.=... ........ .+-.+..+|.+++.|+..+.+-+
T Consensus 224 ~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 332 345555666667777655432110000 00111111 23345678999999888899999
Q ss_pred EeccCC
Q 016552 353 VDVKAA 358 (387)
Q Consensus 353 ~d~~~~ 358 (387)
+|+...
T Consensus 304 Wdi~S~ 309 (476)
T KOG0646|consen 304 WDIYSK 309 (476)
T ss_pred EecchH
Confidence 999865
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=91.53 E-value=11 Score=34.38 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=65.1
Q ss_pred ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552 165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~ 244 (387)
.+-.||..++.-+. .+........++..+..=.+.||.+. .+..||..++. =..+..-..+...
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~----~~~igth~~~i~c-- 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG--------QVRRYDLNTGN----EDQIGTHDEGIRC-- 99 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc--------eEEEEEecCCc----ceeeccCCCceEE--
Confidence 46777777762221 11111112234444555556676654 78899999988 4444422222100
Q ss_pred ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 245 ~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
..-....|. .+.|+.+..+...|+.... .......+-...++.+.+++ .++|..+.++..||..+.
T Consensus 100 -i~~~~~~~~-vIsgsWD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~-LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 100 -IEYSYEVGC-VISGSWDKTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNR-LVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -EEeeccCCe-EEEcccCccEEEEeccccc---cccccccCceEEEEeccCCE-EEEeecCceEEEEEcccc
Confidence 111111333 3566777788888887611 11101111112233344544 455555678999998654
No 149
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.44 E-value=17 Score=36.57 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=82.2
Q ss_pred EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECC
Q 016552 193 CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVV 271 (387)
Q Consensus 193 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~ 271 (387)
..++.+.|.|..+. .+-+||+.+.+ --..-.-...+ ..+..+++ ..++-|..+..|.+.|+.
T Consensus 338 ~~~~~~lvsgs~d~--------~v~VW~~~~~~----cl~sl~gH~~~-----V~sl~~~~~~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 338 QLDEPLLVSGSYDG--------TVKVWDPRTGK----CLKSLSGHTGR-----VYSLIVDSENRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EecCCEEEEEecCc--------eEEEEEhhhce----eeeeecCCcce-----EEEEEecCcceEEeeeeccceEeecCC
Confidence 44566777766544 78899998776 22211111111 23456677 555566666778999988
Q ss_pred CCceeecccccccCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC
Q 016552 272 ANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 272 ~~~W~~~~~~~~~~~~~~~~~----~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~ 347 (387)
+.. . . -....++... ...+++++-+..++.|..||.+++.=.++..-+ ......++..+...++..+..
T Consensus 401 ~~~-~-c----~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~ 473 (537)
T KOG0274|consen 401 TKR-K-C----IHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDD 473 (537)
T ss_pred chh-h-h----hhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecC
Confidence 874 1 1 1111122222 223455555556788999999888655544333 333444444444666776777
Q ss_pred CeEEEEeccCC
Q 016552 348 GGIVVVDVKAA 358 (387)
Q Consensus 348 ~~i~~~d~~~~ 358 (387)
..+.++|+.+.
T Consensus 474 ~~~~l~dl~~~ 484 (537)
T KOG0274|consen 474 GSVKLWDLRSG 484 (537)
T ss_pred CeeEEEecccC
Confidence 77888888865
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=91.08 E-value=6.5 Score=38.11 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=57.2
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM- 293 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~- 293 (387)
.|..||.....+...|.+....|..- .+..-.+..|++--|++..|..||.....=... +....+-.++++
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~g-----icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~---l~y~~Plstvaf~ 259 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCRG-----ICFSPSNEALLVSVGYDKKINIYDIRSQASTDR---LTYSHPLSTVAFS 259 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcCc-----ceecCCccceEEEecccceEEEeecccccccce---eeecCCcceeeec
Confidence 56667776665555577776655322 334455778888888888999999886542211 111112234443
Q ss_pred eCCeEEEEeCCCCeEEEEeCCC
Q 016552 294 DEEVLYGIDENSCTLSRYDEVM 315 (387)
Q Consensus 294 ~~~~ly~~~~~~~~l~~yd~~~ 315 (387)
.+|...+.|...|+|+.||+..
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred CCceEEEeecCCceEEEEeccc
Confidence 3556666666678999999854
No 151
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.93 E-value=17 Score=35.52 Aligned_cols=177 Identities=8% Similarity=-0.020 Sum_probs=93.1
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..++++|..+++-+.+...+..-........+.+|++...... ...++++|..+++ ...+..-+....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~----~~~lt~~~~~~~-- 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ----IRQVTDGRSNNT-- 290 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC----EEEccCCCCCcC--
Confidence 4688999988887777655432222222222335655433211 1258889999888 777654321111
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W 318 (387)
.....-||+ |++..... ..++.+|+.++.-+.+... ......+.....|..|++..... ..++.+|++++.+
T Consensus 291 --~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 291 --EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred --ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 112233555 54443322 4677888887765555321 11111122222344555554332 3589999999988
Q ss_pred eEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccC
Q 016552 319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA 357 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~ 357 (387)
+.+.... ........-+|+.+++... ...+.+++.+.
T Consensus 368 ~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 368 QVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 8776421 1112234466766555542 23466667764
No 152
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.70 E-value=25 Score=37.09 Aligned_cols=204 Identities=14% Similarity=0.161 Sum_probs=104.2
Q ss_pred eEEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCC--------Cc--ce-------------eEEEe
Q 016552 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RR--WC-------------AAGCS 194 (387)
Q Consensus 140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~--------r~--~~-------------~~~~~ 194 (387)
..-+.+++.||+... ...++.+|+.|. .|+.-+..+.. |. ++ +.+..
T Consensus 188 ~TPlvvgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~ 259 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC 259 (764)
T ss_pred cCCEEECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc
Confidence 456678999999754 145788888876 58765443311 10 00 01233
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-----------CCCCCCCccccceEEEEECCEEEEEee--e
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-----------GELKDGRFSREAIDAVGWKGKLCLVNV--K 261 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-----------~~~p~~~~~~~~~~~~~~~g~lyv~gg--~ 261 (387)
+++||+.. .+ ..+..+|.+|++.- |..- ...+...+. ....-++.++++|+-+. .
T Consensus 260 ~~rV~~~T-~D--------g~LiALDA~TGk~~--W~fg~~G~vdl~~~~g~~~~g~~~-~ts~P~V~~g~VIvG~~v~d 327 (764)
T TIGR03074 260 ARRIILPT-SD--------ARLIALDADTGKLC--EDFGNNGTVDLTAGMGTTPPGYYY-PTSPPLVAGTTVVIGGRVAD 327 (764)
T ss_pred CCEEEEec-CC--------CeEEEEECCCCCEE--EEecCCCceeeecccCcCCCcccc-cccCCEEECCEEEEEecccc
Confidence 45666532 11 25677788777754 5421 111111111 11334677888876321 0
Q ss_pred -------CCeEEEEECCCC--ceeeccc--c----ccc----------CCCCcEEEEeCCeEEEEeC-------------
Q 016552 262 -------GAEGAVYDVVAN--TWDDMRE--G----MVR----------GWRGPVAAMDEEVLYGIDE------------- 303 (387)
Q Consensus 262 -------~~~i~~yD~~~~--~W~~~~~--~----~~~----------~~~~~~~~~~~~~ly~~~~------------- 303 (387)
...+..||.+++ .|+.-.. . +.. .|...+.-...|.+|+-.+
T Consensus 328 ~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~ 407 (764)
T TIGR03074 328 NYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTP 407 (764)
T ss_pred cccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCcccc
Confidence 156899999988 4764321 0 000 0111111112345555221
Q ss_pred ----CCCeEEEEeCCCC--ceeEccccc-----cccCceEEEEe---CCe---EEEEecCCCeEEEEeccCCCCCCceE
Q 016552 304 ----NSCTLSRYDEVMD--DWKEVVKSD-----LLKGARHAAAG---GGR---VCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 304 ----~~~~l~~yd~~~~--~W~~v~~~~-----~~~~~~~~~~~---~g~---i~v~gg~~~~i~~~d~~~~~~~~~W~ 365 (387)
.++.|.+.|.+|+ .|..-.... .......++-+ +|+ +++.+..++.++++|..++ .-.|.
T Consensus 408 ~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG--~~l~~ 484 (764)
T TIGR03074 408 ADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG--EPIVP 484 (764)
T ss_pred CcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC--CEEee
Confidence 1246889999886 475422111 11122223322 563 6667677788999999864 13455
No 153
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.42 E-value=20 Score=35.60 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=84.5
Q ss_pred EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeC--CEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 225 (387)
.||+.|.. .++|++|...++|-. |+...-...-++.++ ..++++||.+. .++.+|+.+.+
T Consensus 147 Dly~~gsg--------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g--------~VEfwDpR~ks 208 (703)
T KOG2321|consen 147 DLYLVGSG--------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG--------VVEFWDPRDKS 208 (703)
T ss_pred cEEEeecC--------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc--------eEEEecchhhh
Confidence 47776542 478999999998854 333222222222232 46778877655 78888888776
Q ss_pred cccCeEEc------CCCCCCCccccceEEEEECC-EEEEEee-eCCeEEEEECCCCceeecccccccCCCCcEEE----E
Q 016552 226 KNSRWEKT------GELKDGRFSREAIDAVGWKG-KLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----M 293 (387)
Q Consensus 226 ~~~~W~~~------~~~p~~~~~~~~~~~~~~~g-~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~ 293 (387)
. -..+ ...|.....+. .++..+.+ -|-+.-| ....+++||+.+.+=-.+...... ...-... -
T Consensus 209 r---v~~l~~~~~v~s~pg~~~~~s-vTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e-~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 209 R---VGTLDAASSVNSHPGGDAAPS-VTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE-LPIKKLDWQDTD 283 (703)
T ss_pred h---heeeecccccCCCccccccCc-ceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc-cceeeecccccC
Confidence 1 1111 12222211111 23333433 4554444 337899999987653222211100 0000000 1
Q ss_pred eCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEecCCCeE
Q 016552 294 DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVCENGGGI 350 (387)
Q Consensus 294 ~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~gg~~~~i 350 (387)
..++|+-++ ...+..||..+++ .+....+.. -.-.|...++-+++++-.+..+
T Consensus 284 ~q~~v~S~D--k~~~kiWd~~~Gk--~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 284 QQNKVVSMD--KRILKIWDECTGK--PMASIEPTSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred CCceEEecc--hHHhhhcccccCC--ceeeccccCCcCceeeecCCceEEEecCCCcc
Confidence 123444442 2245667776652 222222222 2344566666677775544433
No 154
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.31 E-value=6.1 Score=37.76 Aligned_cols=150 Identities=16% Similarity=0.101 Sum_probs=79.9
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC--EEEEEeeeCCeE
Q 016552 188 WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG--KLCLVNVKGAEG 265 (387)
Q Consensus 188 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g--~lyv~gg~~~~i 265 (387)
...++..+++.+++||.+. .+.++|..+.+ =... ++..+- .....+...| .+|..+. +..+
T Consensus 206 l~~avS~Dgkylatgg~d~--------~v~Iw~~~t~e----hv~~--~~ghr~--~V~~L~fr~gt~~lys~s~-Drsv 268 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDR--------HVQIWDCDTLE----HVKV--FKGHRG--AVSSLAFRKGTSELYSASA-DRSV 268 (479)
T ss_pred EEEEEcCCCcEEEecCCCc--------eEEEecCcccc----hhhc--cccccc--ceeeeeeecCccceeeeec-CCce
Confidence 3445566899999999866 56788877766 1111 111110 0012233333 4664432 2345
Q ss_pred EEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEe
Q 016552 266 AVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVC 344 (387)
Q Consensus 266 ~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~g 344 (387)
-+++.+...-.+.-.+...+..+-. +..-+++..+|+.+.++..|+.... =+.+-. ... ..-|++.+++.=||.|
T Consensus 269 kvw~~~~~s~vetlyGHqd~v~~Id-aL~reR~vtVGgrDrT~rlwKi~ee-sqlifr--g~~~sidcv~~In~~HfvsG 344 (479)
T KOG0299|consen 269 KVWSIDQLSYVETLYGHQDGVLGID-ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFR--GGEGSIDCVAFINDEHFVSG 344 (479)
T ss_pred EEEehhHhHHHHHHhCCccceeeec-hhcccceEEeccccceeEEEecccc-ceeeee--CCCCCeeeEEEecccceeec
Confidence 5555444333222111111111111 1234578888887888888887222 111111 112 2345667888889998
Q ss_pred cCCCeEEEEeccCC
Q 016552 345 ENGGGIVVVDVKAA 358 (387)
Q Consensus 345 g~~~~i~~~d~~~~ 358 (387)
+.++.|.++++.++
T Consensus 345 SdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 345 SDNGSIALWSLLKK 358 (479)
T ss_pred cCCceEEEeeeccc
Confidence 88899999998865
No 155
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.15 E-value=17 Score=34.38 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=41.5
Q ss_pred CEEEEEecccC--CCCCCCCccEEEeccCCceee-CCCCCCCCc------ceeEEEeCC-EEEEEecCCCCCCCCCcceE
Q 016552 147 GKLILLAATTH--NFNPALTRPLIFDPICRTWTF-GPELVTPRR------WCAAGCSRG-AVYVASGIGSQFSSDVAKSV 216 (387)
Q Consensus 147 ~~l~v~GG~~~--~~~~~~~~~~vyd~~t~~W~~-l~~~p~~r~------~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v 216 (387)
..||+...+.. ........+.+||+.|.+-.. ++..+.||. ...+..-+| .+||. +....+.+
T Consensus 58 ~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-------n~~p~~~V 130 (352)
T TIGR02658 58 SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-------QFSPSPAV 130 (352)
T ss_pred CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-------cCCCCCEE
Confidence 45777765211 112345678999999987654 433234441 122223344 57876 22234688
Q ss_pred EEEECCCCc
Q 016552 217 EKWDLMNGE 225 (387)
Q Consensus 217 ~~yd~~~~~ 225 (387)
-+.|..+++
T Consensus 131 ~VvD~~~~k 139 (352)
T TIGR02658 131 GVVDLEGKA 139 (352)
T ss_pred EEEECCCCc
Confidence 999999988
No 156
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.01 E-value=19 Score=34.85 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=16.6
Q ss_pred CeEEEEECCCCceeeccccc
Q 016552 263 AEGAVYDVVANTWDDMREGM 282 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~ 282 (387)
.+|+.|||+++.-+++.-++
T Consensus 287 GdIylydP~td~lekldI~l 306 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGL 306 (668)
T ss_pred CcEEEeCCCcCcceeeecCC
Confidence 78999999999988876543
No 157
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.72 E-value=21 Score=34.69 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=91.2
Q ss_pred CCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552 161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 161 ~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~ 240 (387)
....++++++...++-+++.-+-.+-+..+.-.-+|.|.|.--... ......+.|-...+- ....+++.+.
T Consensus 104 ~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~t----PF~q~~~lYkv~~dg-----~~~e~LnlGp 174 (668)
T COG4946 104 LQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHT----PFSQWTELYKVNVDG-----IKTEPLNLGP 174 (668)
T ss_pred CccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCC----CcccceeeeEEccCC-----ceeeeccCCc
Confidence 3456789999998888887665221122222234678887654332 222345667666554 1122344332
Q ss_pred ccccceEEEEECCEEEEEeeeC--------------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-
Q 016552 241 FSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS- 305 (387)
Q Consensus 241 ~~~~~~~~~~~~g~lyv~gg~~--------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~- 305 (387)
. ...+.-||.++ +|... ..+|+=--...+.+++-+ +.- ...+.+++++++|++....
T Consensus 175 a----thiv~~dg~iv-igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vd-l~~--~vS~PmIV~~RvYFlsD~eG 246 (668)
T COG4946 175 A----THIVIKDGIIV-IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVD-LDG--NVSSPMIVGERVYFLSDHEG 246 (668)
T ss_pred e----eeEEEeCCEEE-EccCcccCcccccccCCccceEEEEecCCcceeeeee-cCC--CcCCceEEcceEEEEecccC
Confidence 1 22455577554 43321 222222111112332222 111 2334556788999997543
Q ss_pred -CeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 306 -CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 306 -~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
|.|+.-|.+.+--++-......- ..=+..+|+-+|| ..+++|++||+.+.
T Consensus 247 ~GnlYSvdldGkDlrrHTnFtdYY--~R~~nsDGkrIvF-q~~GdIylydP~td 297 (668)
T COG4946 247 VGNLYSVDLDGKDLRRHTNFTDYY--PRNANSDGKRIVF-QNAGDIYLYDPETD 297 (668)
T ss_pred ccceEEeccCCchhhhcCCchhcc--ccccCCCCcEEEE-ecCCcEEEeCCCcC
Confidence 56888787766433322221111 1123456777777 45566888888865
No 158
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.65 E-value=12 Score=34.69 Aligned_cols=133 Identities=16% Similarity=0.062 Sum_probs=73.9
Q ss_pred CccEEEeccCC-----ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC
Q 016552 164 TRPLIFDPICR-----TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD 238 (387)
Q Consensus 164 ~~~~vyd~~t~-----~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~ 238 (387)
..+++|+.... +.+.+.....+-...+.+.++++|.+..|. .+.+|+...++ ++...+.+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~----------~l~v~~l~~~~---~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN----------KLYVYDLDNSK---TLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT----------EEEEEEEETTS---SEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC----------EEEEEEccCcc---cchhhheecc
Confidence 56899999885 566555444444456667778887666552 56777776555 2777765544
Q ss_pred CCccccceEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEE--EEeC
Q 016552 239 GRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLS--RYDE 313 (387)
Q Consensus 239 ~~~~~~~~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~--~yd~ 313 (387)
+... ....++++.|++-.... -.+..||.+..+-..++.... .....++.+. ++..++.+-..|.++ .|++
T Consensus 129 ~~~i---~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~-~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 129 PFYI---TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ-PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSE---EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred eEEE---EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC-CccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 4332 45667788776544333 445667886666776664222 2222333333 444444443456544 4564
No 159
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=89.47 E-value=16 Score=32.95 Aligned_cols=101 Identities=9% Similarity=0.044 Sum_probs=57.2
Q ss_pred EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE
Q 016552 255 LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA 334 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~ 334 (387)
+.+-++.+..+-+.|+.+.+=...-.+ ..+.-....+..||.|...||.+|+++.||....+= +..++....-+.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~ 240 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLC 240 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEE
Confidence 334445557788888877554322110 111112334456889999999999999999876532 33333333334445
Q ss_pred EeCCeEEEEecCCCeEEEEeccCC
Q 016552 335 AGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 335 ~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
...++..+.-+-+..|-++|...+
T Consensus 241 fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred ecCCceeEeeccCCceEEEeccch
Confidence 555555555455555666666543
No 160
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.27 E-value=22 Score=34.52 Aligned_cols=138 Identities=9% Similarity=-0.132 Sum_probs=77.2
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
.+++++|..++.++++...+..-........+.+||+...... ...+.++|..+++ .+++..-.. .
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~----~~rlt~~g~--~-- 322 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG------YPNIFMKKLNSGS----VEQVVFHGK--N-- 322 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC------CceEEEEECCCCC----eEeCccCCC--c--
Confidence 5799999999999998765431112222223446777654322 2478889998888 766542211 1
Q ss_pred cceEEEEECCEEE-EEeee-------C-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEe
Q 016552 244 EAIDAVGWKGKLC-LVNVK-------G-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYD 312 (387)
Q Consensus 244 ~~~~~~~~~g~ly-v~gg~-------~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd 312 (387)
.....-+|+.. +.... + ..+.++|++++.++.+... .. -..++-.-.|..|++..... ..|+.++
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~-~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GV-NQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CC-cCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 11233355532 22221 1 4788999999998877652 11 11234334455565554332 2477777
Q ss_pred CCCCcee
Q 016552 313 EVMDDWK 319 (387)
Q Consensus 313 ~~~~~W~ 319 (387)
.+.+.=.
T Consensus 399 l~g~~~~ 405 (419)
T PRK04043 399 LNYNKSF 405 (419)
T ss_pred cCCCeeE
Confidence 7665333
No 161
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.14 E-value=16 Score=34.99 Aligned_cols=126 Identities=11% Similarity=0.148 Sum_probs=68.8
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
+|-|+..|-.+. .+.+||..... .++.+|..-.. -......-||...+..-.+..+..+|+....
T Consensus 358 DgLifgtgt~d~--------~vkiwdlks~~------~~a~Fpght~~-vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 358 DGLIFGTGTPDG--------VVKIWDLKSQT------NVAKFPGHTGP-VKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred CceEEeccCCCc--------eEEEEEcCCcc------ccccCCCCCCc-eeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 566776654433 67888887665 33444432111 0011223355544444444568999987654
Q ss_pred -eeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeC
Q 016552 275 -WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGG 337 (387)
Q Consensus 275 -W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 337 (387)
..+++ ........+..+. .|....+++++-.|+.|+-.+..|+++.......+....+..+
T Consensus 423 n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 423 NFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred ccceee--ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 22222 1222112222322 3455556555556888888999999999877666555555554
No 162
>PRK02889 tolB translocation protein TolB; Provisional
Probab=89.03 E-value=23 Score=34.42 Aligned_cols=179 Identities=13% Similarity=0.036 Sum_probs=84.7
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..+++.|.....-+.+......-........+.+|+... ... ....++++|..+++ =..+...+....
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s-~~~-----~~~~I~~~dl~~g~----~~~l~~~~g~~~-- 243 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVS-FES-----KKPVVYVHDLATGR----RRVVANFKGSNS-- 243 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEE-ccC-----CCcEEEEEECCCCC----EEEeecCCCCcc--
Confidence 567888876555455432222211222222233454432 211 12368899998887 444443331111
Q ss_pred cceEEEEECC-EEEEEee-eC-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552 244 EAIDAVGWKG-KLCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g-~lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W 318 (387)
.....-|| +|++... .+ ..++.+|..++..+.+.... .....+.-.-.|..|++..... ..|+.+|.+++..
T Consensus 244 --~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 244 --APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred --ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 12223355 4544322 22 56888888877665554311 1111222222344565554322 3578888877776
Q ss_pred eEccccccccCceEEEEeCCe-EEEEecCC--CeEEEEeccCC
Q 016552 319 KEVVKSDLLKGARHAAAGGGR-VCAVCENG--GGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~g~-i~v~gg~~--~~i~~~d~~~~ 358 (387)
+.+.......... ...-+|+ |+.....+ ..++++|..+.
T Consensus 321 ~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 321 QRVTFTGSYNTSP-RISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEecCCCCcCce-EECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 6654221111112 2333454 44443322 46888887754
No 163
>smart00284 OLF Olfactomedin-like domains.
Probab=88.37 E-value=18 Score=32.37 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=83.0
Q ss_pred ceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCC----C--------cceeEEEeCCEEEEEecCCC
Q 016552 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP----R--------RWCAAGCSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~----r--------~~~~~~~~~~~iyv~GG~~~ 206 (387)
|-+.++.+|.+|.--. ....+..||..+++-.....+|.+ + ...-.++.++-|+|+=....
T Consensus 76 GtG~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~ 148 (255)
T smart00284 76 GTGVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ 148 (255)
T ss_pred cccEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence 4567888888888533 235789999999976433333321 1 22345556666766522211
Q ss_pred CCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 016552 207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM 282 (387)
Q Consensus 207 ~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~ 282 (387)
. .+. + .+-..|+.+=+..-.|..- .+...+ ..+.++-|.||++.... .-..+||+.+++=..+.-.+
T Consensus 149 ~-~g~-i-vvSkLnp~tL~ve~tW~T~--~~k~sa----~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f 219 (255)
T smart00284 149 N-AGK-I-VISKLNPATLTIENTWITT--YNKRSA----SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPF 219 (255)
T ss_pred C-CCC-E-EEEeeCcccceEEEEEEcC--CCcccc----cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeee
Confidence 0 011 0 2223344322211127762 222222 34566678999996422 44678999987633322212
Q ss_pred ccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 016552 283 VRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEV 314 (387)
Q Consensus 283 ~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~ 314 (387)
+......+.. ..+.+||+-+ +|.+..||..
T Consensus 220 ~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v~ 252 (255)
T smart00284 220 ENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDIA 252 (255)
T ss_pred ccccccceeceeCCCCCeEEEEe--CCeEEEEEEE
Confidence 2221222222 2367888884 6778888764
No 164
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.57 E-value=13 Score=30.78 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=44.7
Q ss_pred EEECCEEEEEeeeC---C--eEEEEECCCCce-eecccccccC--CCCcEE-EEeCCeEEEEeCC--C--CeEEEEe---
Q 016552 249 VGWKGKLCLVNVKG---A--EGAVYDVVANTW-DDMREGMVRG--WRGPVA-AMDEEVLYGIDEN--S--CTLSRYD--- 312 (387)
Q Consensus 249 ~~~~g~lyv~gg~~---~--~i~~yD~~~~~W-~~~~~~~~~~--~~~~~~-~~~~~~ly~~~~~--~--~~l~~yd--- 312 (387)
+.++|.+|-+.... . .|.+||+.+++. ..++.+.... ...... ++.+++|-++... . -.||+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~ 81 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG 81 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence 57899999776554 1 699999999999 5555311111 112223 2336777777431 2 2455544
Q ss_pred CCCCceeEccc
Q 016552 313 EVMDDWKEVVK 323 (387)
Q Consensus 313 ~~~~~W~~v~~ 323 (387)
-...+|+++-.
T Consensus 82 ~~~~SWtK~~~ 92 (164)
T PF07734_consen 82 YGKESWTKLFT 92 (164)
T ss_pred cCcceEEEEEE
Confidence 23678998764
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.48 E-value=35 Score=34.53 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=34.0
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCc
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
..+|+|++..+ |-...-++.+ ..+.--..+.. +++|+-.+..+ .+..+|+.+..
T Consensus 47 g~IEiwN~~~~-----w~~~~vi~g~-~drsIE~L~W~e~~RLFS~g~sg-~i~EwDl~~lk 101 (691)
T KOG2048|consen 47 GNIEIWNLSNN-----WFLEPVIHGP-EDRSIESLAWAEGGRLFSSGLSG-SITEWDLHTLK 101 (691)
T ss_pred CcEEEEccCCC-----ceeeEEEecC-CCCceeeEEEccCCeEEeecCCc-eEEEEecccCc
Confidence 47899999986 8765544332 11222334455 78888877665 67777776653
No 166
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.40 E-value=29 Score=33.51 Aligned_cols=109 Identities=10% Similarity=-0.023 Sum_probs=55.8
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce-----eEccccc
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDW-----KEVVKSD 325 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W-----~~v~~~~ 325 (387)
-+|.+++++..+.-....|.....|+.+.........+ .....++.+++++. .|.++.-+.....| .++....
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~-v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~ 325 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQN-MGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKS 325 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceee-eeEcCCCCEEEEeC-CceEEEecCCCCcccccceeecccCC
Confidence 35566666655533334454455599887533222211 22235678888774 56666666666655 3333221
Q ss_pred cccCceEEEEe-CCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 326 LLKGARHAAAG-GGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 326 ~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
.......+... ++.++++|..|. ++.-... |+.|+.
T Consensus 326 ~~~~l~~v~~~~d~~~~a~G~~G~-v~~s~D~----G~tW~~ 362 (398)
T PLN00033 326 RGFGILDVGYRSKKEAWAAGGSGI-LLRSTDG----GKSWKR 362 (398)
T ss_pred CCcceEEEEEcCCCcEEEEECCCc-EEEeCCC----CcceeE
Confidence 11122333333 567877755543 3333333 347986
No 167
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=87.20 E-value=14 Score=33.61 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=34.9
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
|+...+..|.+..+..+|.++++=...-..-..........-.|-.|.+-+..++++..||..++
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 44444555666789999999986432211001000000011123345555556788999998755
No 168
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.08 E-value=39 Score=34.77 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=65.4
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceeEccccc
Q 016552 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD-DWKEVVKSD 325 (387)
Q Consensus 248 ~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~-~W~~v~~~~ 325 (387)
...-||.+.+.|+.++.+-+||..++... +... ...+..+-.... .|+..+-..-+|++.+||.... ..+....+.
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence 33458888888888889999998876432 2222 222222222223 3444443334789999999765 344444433
Q ss_pred cccCceEEEEeC--CeEEEEecC-CCeEEEEeccCC
Q 016552 326 LLKGARHAAAGG--GRVCAVCEN-GGGIVVVDVKAA 358 (387)
Q Consensus 326 ~~~~~~~~~~~~--g~i~v~gg~-~~~i~~~d~~~~ 358 (387)
+. .+.+++.+ |.|+++|+. ...|+++++.++
T Consensus 435 p~--QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 435 PI--QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ce--eeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 33 45566666 899999774 467888877765
No 169
>PTZ00421 coronin; Provisional
Probab=87.05 E-value=12 Score=37.17 Aligned_cols=105 Identities=5% Similarity=-0.019 Sum_probs=57.8
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecc--c-ccccCCC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEcccc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMR--E-GMVRGWR--GPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKS 324 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~--~-~~~~~~~--~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~ 324 (387)
++.+.+.++.+..+.+||..++...... . ....+.. ...++.. ++.+++.++.++.|.+||.++..- +..+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l 164 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVI 164 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEE
Confidence 4455556666667888887654321100 0 0011111 1123332 335666666788999999987642 2222
Q ss_pred ccccCce--EEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 325 DLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 325 ~~~~~~~--~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
....... .....+|.+++.|+.+..|-+||+.+.
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg 200 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence 2222222 222347888888888888999998754
No 170
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.68 E-value=29 Score=32.92 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=87.4
Q ss_pred EEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEEC
Q 016552 191 AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV 270 (387)
Q Consensus 191 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~ 270 (387)
.+..++++|+... + ..+..+|+.+.... |+....-...... .....-+|+||+-...+ .+++||.
T Consensus 64 ~~~~dg~v~~~~~-----~----G~i~A~d~~~g~~~--W~~~~~~~~~~~~---~~~~~~~G~i~~g~~~g-~~y~ld~ 128 (370)
T COG1520 64 PADGDGTVYVGTR-----D----GNIFALNPDTGLVK--WSYPLLGAVAQLS---GPILGSDGKIYVGSWDG-KLYALDA 128 (370)
T ss_pred cEeeCCeEEEecC-----C----CcEEEEeCCCCcEE--ecccCcCcceecc---CceEEeCCeEEEecccc-eEEEEEC
Confidence 3677889999711 1 16788999988754 8755421001111 12333389988765554 7899999
Q ss_pred CCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEccccc-cccCceEEEEeCCeEEEEec
Q 016552 271 VAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSD-LLKGARHAAAGGGRVCAVCE 345 (387)
Q Consensus 271 ~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~-~~~~~~~~~~~~g~i~v~gg 345 (387)
.++ .|..-... . ......+++.++.+|+.. .++.+++.|.++. .|..-...+ ...........++.+|+-..
T Consensus 129 ~~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~ 205 (370)
T COG1520 129 STGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD 205 (370)
T ss_pred CCCcEEEEEecCC-C-eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC
Confidence 644 68765543 1 111223445566676653 4578888888854 577533321 11111112245566666533
Q ss_pred C-CCeEEEEeccCCCCCCceE
Q 016552 346 N-GGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 346 ~-~~~i~~~d~~~~~~~~~W~ 365 (387)
+ ...++.+|+.++ ..+|.
T Consensus 206 ~~~~~~~a~~~~~G--~~~w~ 224 (370)
T COG1520 206 GYDGILYALNAEDG--TLKWS 224 (370)
T ss_pred CCcceEEEEEccCC--cEeee
Confidence 2 346788888633 24677
No 171
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.10 E-value=26 Score=33.39 Aligned_cols=182 Identities=10% Similarity=0.045 Sum_probs=93.5
Q ss_pred ECCEEEEEecccCCCCCCCCccEEEeccCC---ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552 145 LSGKLILLAATTHNFNPALTRPLIFDPICR---TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL 221 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~---~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 221 (387)
.++.-+|.|+.+ ..+..+|..-+ .|+-+- .++....+...+|+-.++-+.+. .+..|+.
T Consensus 322 pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr---~~~v~dlait~Dgk~vl~v~~d~--------~i~l~~~ 383 (519)
T KOG0293|consen 322 PDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVR---DPKVHDLAITYDGKYVLLVTVDK--------KIRLYNR 383 (519)
T ss_pred cCCceeEecCCC-------CcEEEecCCcchhhcccccc---cceeEEEEEcCCCcEEEEEeccc--------ceeeech
Confidence 355566666633 34566666544 566442 24555555555665433333322 5566777
Q ss_pred CCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccccc--ccCCCCcEEEEeC-CeE
Q 016552 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VRGWRGPVAAMDE-EVL 298 (387)
Q Consensus 222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~~~~~~~~~~~~-~~l 298 (387)
++.. =+.+-....+.. ..+..-+|++.++.-....+...|.+ .|..+..-+ ..+..--..|+.| +.-
T Consensus 384 e~~~----dr~lise~~~it----s~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 384 EARV----DRGLISEEQPIT----SFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred hhhh----hhccccccCcee----EEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcc
Confidence 6665 221111111211 22445588888887777788999988 455444211 2222222223322 224
Q ss_pred EEE-eCCCCeEEEEeCCCCceeEccccccccCceEEEEeCC--e-EEEEecCCCeEEEEecc
Q 016552 299 YGI-DENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG--R-VCAVCENGGGIVVVDVK 356 (387)
Q Consensus 299 y~~-~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g--~-i~v~gg~~~~i~~~d~~ 356 (387)
|++ |.++++++.|+.+++.= +..++.......+|+.+- . ++.-+++.+.|-++-++
T Consensus 454 fiaSGSED~kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 454 44578899999888743 333444445556666542 2 22233344555555444
No 172
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.00 E-value=45 Score=34.37 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=88.0
Q ss_pred CCccEEEeccCCceeeCCCCCCCC-cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552 163 LTRPLIFDPICRTWTFGPELVTPR-RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 163 ~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~ 241 (387)
...+.+||..|..-.+.=.....| ........++.+.++-|+.+ ..+.+||...+.. .- + +
T Consensus 42 ~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaD-------GsVqif~~~s~~~----~~---t----f 103 (888)
T KOG0306|consen 42 LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYAD-------GSVQIFSLESEEI----LI---T----F 103 (888)
T ss_pred cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecC-------ceEEeeccCCCce----ee---e----e
Confidence 456889999988443322222333 22233344666666666654 2778888776651 10 1 1
Q ss_pred cccceEEE--EE--CCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 242 SREAIDAV--GW--KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 242 ~~~~~~~~--~~--~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
..+..+.. -+ .|...+-|+.+.+|.+||.....=. .+.. ...... ......+..+.+-.+.++.|..||.++.
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G-Hkd~iT-~~~F~~~~~~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRG-HKDSIT-QALFLNGDSFLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeec-chHHHh-HHhccCCCeEEEEeccCceEEEEecccc
Confidence 11101111 12 3445566776678999887544211 0100 000000 0011223455555555677999999988
Q ss_pred ceeEccccccccCc-eEEEEeCCeEEEEecCCCeEEEEec
Q 016552 317 DWKEVVKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 317 ~W~~v~~~~~~~~~-~~~~~~~g~i~v~gg~~~~i~~~d~ 355 (387)
.-.+.- ...++- .+++.. ++++|+++.+..+-+|++
T Consensus 182 hCf~Th--vd~r~Eiw~l~~~-~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 182 HCFETH--VDHRGEIWALVLD-EKLLVTAGTDSELKVWEL 218 (888)
T ss_pred eeeeEE--ecccceEEEEEEe-cceEEEEecCCceEEEEe
Confidence 654432 233332 434444 478888787777777777
No 173
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=85.41 E-value=23 Score=34.64 Aligned_cols=106 Identities=10% Similarity=-0.044 Sum_probs=63.4
Q ss_pred EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCC-CcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccc
Q 016552 250 GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 250 ~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~ 327 (387)
.-||+-.++||+...+-++|+.+-+=+.... ++..-. ..+.+ .-+.++.+-...+|.|.+||....+ .|..++..
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikae-ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGh 550 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGH 550 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhh-cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeecccCC
Confidence 3478888899988888888988766543332 222111 11222 2355666665668899999998773 44455544
Q ss_pred cCceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552 328 KGARHAAAG--GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 328 ~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
...+.+..+ +|.=+-.||-.+.+-.||..+.
T Consensus 551 tDGascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 551 TDGASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred CCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence 444333333 3555556665666666666644
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.33 E-value=43 Score=32.66 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=70.2
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEee-eC-CeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..++++|..+++ -+.+...+.... .....-||+ |++... .+ ..++.+|+++++.+.+... ......+.
T Consensus 223 ~~i~i~dl~~G~----~~~l~~~~~~~~----~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~ 293 (429)
T PRK03629 223 SALVIQTLANGA----VRQVASFPRHNG----APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPT 293 (429)
T ss_pred cEEEEEECCCCC----eEEccCCCCCcC----CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceE
Confidence 367888988887 666654443211 112333554 554422 22 4689999998877766432 11111222
Q ss_pred EEEeCCeEEEEeCCC--CeEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552 291 AAMDEEVLYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~ 358 (387)
-.-.+..|++..... ..|+.+|.++..-+.+....... ......-+|+ |++.+.. ...++++|+.+.
T Consensus 294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred ECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc-cCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 222344455544322 36888898887665553321111 1222334554 4444332 356888888755
No 175
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=84.08 E-value=45 Score=32.80 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=50.5
Q ss_pred CcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552 288 GPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 288 ~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
..++++ .++...++||.++++.+|-.+.+.-.+.......++....+++ ++..+..|.....+++||....
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 344444 4667888999999999999999876666555566666555554 4555555555788999999865
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=83.72 E-value=45 Score=32.46 Aligned_cols=160 Identities=9% Similarity=-0.015 Sum_probs=79.1
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~ 242 (387)
..++++|..+++-+.+...+...... .-.-++ +|++....+. ...++.+|..++. ...+..-....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~~-~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~-- 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGAP-AFSPDGSRLAFASSKDG------VLNIYVMGANGGT----PSQLTSGAGNN-- 294 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCce-eECCCCCEEEEEEecCC------cEEEEEEECCCCC----eEeeccCCCCc--
Confidence 45889999888766665544322211 222244 4554432221 1257778888777 66665322111
Q ss_pred ccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCcee
Q 016552 243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWK 319 (387)
Q Consensus 243 ~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~ 319 (387)
......-||+ |++..... ..++.+|..+..=+.+.. .+ ..+.....++.|++.+. ..++.+|.+++.++
T Consensus 295 --~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 295 --TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--DNVVKQDLTSGSTE 366 (429)
T ss_pred --CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCCeE
Confidence 1223334565 55544333 345555655443222211 11 11222223445555432 46788999998887
Q ss_pred EccccccccCceEEEEeCCeEEEEecC
Q 016552 320 EVVKSDLLKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~g~i~v~gg~ 346 (387)
.+.... ........-+|+.++++..
T Consensus 367 ~lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 367 VLSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred EecCCC--CCCCceECCCCCEEEEEEc
Confidence 654321 1122234557777776654
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.93 E-value=42 Score=36.15 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=84.6
Q ss_pred eeeCCCC-CCCCcceeEEEe---CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc-ccceEEEE
Q 016552 176 WTFGPEL-VTPRRWCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS-REAIDAVG 250 (387)
Q Consensus 176 W~~l~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~-~~~~~~~~ 250 (387)
|..+..| +.+|..-..+.. .|++++.|+. +.|.++|..... .+.++|..-.. ....++-.
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~---------r~IRIWDa~~E~------~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV---------RSIRIWDAHKEQ------VVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCe---------eEEEEEecccce------eEeecccCCCccceeecccc
Confidence 5555544 456644333332 5788887753 478888888776 34455543211 00111222
Q ss_pred ECCEEEEEeeeCCeEEEEECCCC-------ceeecccccccCCCCcEEEEeCCeE-EEEeCCCCeEEEEeCCCCceeEcc
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVAN-------TWDDMREGMVRGWRGPVAAMDEEVL-YGIDENSCTLSRYDEVMDDWKEVV 322 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~-------~W~~~~~~~~~~~~~~~~~~~~~~l-y~~~~~~~~l~~yd~~~~~W~~v~ 322 (387)
.+|.+.+.|-.+..+.+||.... .|++-....+ .-+.+. --+|.- .+-+..+|.|..+|+... ....
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~--~~e~ 1293 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSL-QRQGLGELVSGSQDGDIQLLDLRMS--SKET 1293 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCccc--ceeEEe-ecCCCcceeeeccCCeEEEEecccC--cccc
Confidence 35677777766678999996532 2333222100 000011 111222 233445789999998775 2222
Q ss_pred cccccc----C--ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 323 KSDLLK----G--ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 323 ~~~~~~----~--~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.+.... + ..++..+...-.+..|.+..|.+|+.++.
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChh
Confidence 211111 2 24455565555555566688999998855
No 178
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=82.89 E-value=29 Score=29.63 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=36.8
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeec-ccccccCCC-----CcEEE-EeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDM-REGMVRGWR-----GPVAA-MDEEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~~~~~~-----~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
++++|++.|. ..+.||..+++-..- +..+...|. ..++. ..++++|++. ....+.||..+.+
T Consensus 110 ~~~~yfFkg~--~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~--g~~y~~~d~~~~~ 178 (194)
T cd00094 110 NGKTYFFKGD--KYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFK--GDQYWRFDPRSKE 178 (194)
T ss_pred CCEEEEEeCC--EEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEE--CCEEEEEeCccce
Confidence 6899999873 688898766553211 100111111 12222 3337899995 4579999998765
No 179
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=82.85 E-value=14 Score=34.53 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=61.1
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC-CCCeEEEEeCCCCceeEccccccccCc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
.+..++.|..+..+-+.|+++++-..--.+.-. ..-.+++....=|++.. .++.+.+||.+.++-..-- -..+.+-
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~--~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V 238 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE--TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGV 238 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhh--eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-cccccee
Confidence 456666666667889999999876532221111 12345566666666653 4678999999988543210 0122223
Q ss_pred eEEEEe-CCeEEEEecCCCeEEEEeccCC
Q 016552 331 RHAAAG-GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 331 ~~~~~~-~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+++..+ ...+++.||....+-++|+.++
T Consensus 239 ~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 239 YCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred EEEeccccceeEEecCCcceEEEeeeccc
Confidence 433333 2456667677777888888865
No 180
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=82.23 E-value=2.9 Score=25.40 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=17.5
Q ss_pred EEEEeCCeEEEEeCCCCeEEEEeCCC
Q 016552 290 VAAMDEEVLYGIDENSCTLSRYDEVM 315 (387)
Q Consensus 290 ~~~~~~~~ly~~~~~~~~l~~yd~~~ 315 (387)
+.++.++.||+.+. ++.++++|+++
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 44677888888764 78999999875
No 181
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=82.19 E-value=43 Score=31.11 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=84.9
Q ss_pred EEEEECCEEEEEecccCC-C-CC-CCCccEEEec-cCCceeeCCCCC-----CCC---cceeEEEeCCEEEEEecCCCCC
Q 016552 141 QLVSLSGKLILLAATTHN-F-NP-ALTRPLIFDP-ICRTWTFGPELV-----TPR---RWCAAGCSRGAVYVASGIGSQF 208 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~-~-~~-~~~~~~vyd~-~t~~W~~l~~~p-----~~r---~~~~~~~~~~~iyv~GG~~~~~ 208 (387)
.++.++|.|+.++...-. . .. ...-+..+.. ...+|+...... ..| ..+.+++-+++||++-|.....
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 467789999988764321 1 11 1111222433 345788743211 122 2466677799999886653321
Q ss_pred CCCCcceEEEEECCCCccccCeEEcCCCCCCCcc------ccceEEEEE-CCEEEEE-ee-----eC-CeEEEEECC-CC
Q 016552 209 SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS------REAIDAVGW-KGKLCLV-NV-----KG-AEGAVYDVV-AN 273 (387)
Q Consensus 209 ~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~------~~~~~~~~~-~g~lyv~-gg-----~~-~~i~~yD~~-~~ 273 (387)
.....-.+..+....+... |.....++..... ....+.+.. ||.|.+- -+ .. ..+.+|... ..
T Consensus 83 ~~~~~~~llLvks~~~g~~--W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~ 160 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIK--WGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGK 160 (310)
T ss_dssp -SSTTEEEEEEEEESSSSE--E---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTS
T ss_pred ccccccceeeeeccCCcce--eeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCcc
Confidence 1112223344433222222 9987766543221 111222333 5655432 11 11 356788777 56
Q ss_pred ceeecccccccCCCCcEEEEe-CCeEEEEeCC-CCeEEEE--eCCCCceeE-cccccc
Q 016552 274 TWDDMREGMVRGWRGPVAAMD-EEVLYGIDEN-SCTLSRY--DEVMDDWKE-VVKSDL 326 (387)
Q Consensus 274 ~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~-~~~l~~y--d~~~~~W~~-v~~~~~ 326 (387)
+|..-....+.+...|+++-. +|+|.++... .|.-.+| .-...+|++ +..+++
T Consensus 161 ~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 161 TWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp S-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTTT
T ss_pred ceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccce
Confidence 898765534555567888888 7899888753 4534444 456778999 556554
No 182
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.64 E-value=52 Score=31.70 Aligned_cols=182 Identities=10% Similarity=-0.026 Sum_probs=90.8
Q ss_pred CCccEEEeccCCcee--eCCCCCCCCc-ceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCC-----ccccCeEEc
Q 016552 163 LTRPLIFDPICRTWT--FGPELVTPRR-WCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG-----EKNSRWEKT 233 (387)
Q Consensus 163 ~~~~~vyd~~t~~W~--~l~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-----~~~~~W~~~ 233 (387)
...++.+...|..-. .+-.-+.... ...+. .-+++..++.-... ...+.+++.|.... . |..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~----~~~s~v~~~d~~~~~~~~~~----~~~l 272 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG----TSESEVYLLDLDDGGSPDAK----PKLL 272 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS----SSEEEEEEEECCCTTTSS-S----EEEE
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc----ccCCeEEEEeccccCCCcCC----cEEE
Confidence 456777777776544 2211222222 22222 23444333322211 11357888888875 5 8877
Q ss_pred CCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCCCc---ee-ecccccccCCCCcEEEEeCCeEEEEeCCC-
Q 016552 234 GELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANT---WD-DMREGMVRGWRGPVAAMDEEVLYGIDENS- 305 (387)
Q Consensus 234 ~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~~---W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~- 305 (387)
.+--... .......++.+|+....+ ..+..+++.... |. .+.. ......-..+.+.++.|++....+
T Consensus 273 ~~~~~~~----~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 273 SPREDGV----EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EESSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETT
T ss_pred eCCCCce----EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECC
Confidence 6422121 133445689999887654 688899988765 66 4432 122212334556678888765433
Q ss_pred -CeEEEEeCCCCceeEccccccccCceEEEE--e-CCeEEEE-ecCC--CeEEEEeccCC
Q 016552 306 -CTLSRYDEVMDDWKEVVKSDLLKGARHAAA--G-GGRVCAV-CENG--GGIVVVDVKAA 358 (387)
Q Consensus 306 -~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~-~g~i~v~-gg~~--~~i~~~d~~~~ 358 (387)
..|.+||.. ..|.......+..+...... . .+.+++. .+.. ..++.||+.++
T Consensus 348 ~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 348 SSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 368999998 23333332222222222222 1 2444443 2322 57888888865
No 183
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=81.47 E-value=26 Score=33.54 Aligned_cols=110 Identities=6% Similarity=0.011 Sum_probs=62.3
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCc-eeEcccccccc
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDD-WKEVVKSDLLK 328 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~-W~~v~~~~~~~ 328 (387)
-||-|+..|-.+..+.+||+.+.. .+...++..-...++.+. +|.-.+.+.+++.+..||....+ ...+.......
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence 367777666555778899998877 444322211112234444 44444444556779999986653 11111111111
Q ss_pred CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
......-..|..++++|..-.|+.++-.++ .|..
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----~W~~ 468 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTK----SWTE 468 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccc----ccee
Confidence 122222344778888766777888887777 8983
No 184
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.40 E-value=44 Score=30.73 Aligned_cols=51 Identities=18% Similarity=0.054 Sum_probs=33.3
Q ss_pred eEEEEeCCCCceeEccccc----------------cccCceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552 307 TLSRYDEVMDDWKEVVKSD----------------LLKGARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 307 ~l~~yd~~~~~W~~v~~~~----------------~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~ 357 (387)
.+..|+++.+....+.... ......++...++.-+++|+.+..|.++|.+.
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 4667777776555444221 11224556666777888888888999999884
No 185
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.72 E-value=47 Score=30.58 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=51.4
Q ss_pred eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEeCCeE---EEE-eCCCCeEEEEeCCCCceeE
Q 016552 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMDEEVL---YGI-DENSCTLSRYDEVMDDWKE 320 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~~~~l---y~~-~~~~~~l~~yd~~~~~W~~ 320 (387)
..++++++...+-|+.+..|.+||..++. ++...... .+. .+......+ .++ +..+|.|.+|+. +.|..
T Consensus 46 itavAVs~~~~aSGssDetI~IYDm~k~~--qlg~ll~H--agsitaL~F~~~~S~shLlS~sdDG~i~iw~~--~~W~~ 119 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSDETIHIYDMRKRK--QLGILLSH--AGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--GSWEL 119 (362)
T ss_pred eeEEEecceeEeccCCCCcEEEEeccchh--hhcceecc--ccceEEEEecCCcchhheeeecCCCcEEEEEc--CCeEE
Confidence 45778888866666667889999988763 12211110 111 111111111 233 335788999986 77988
Q ss_pred ccccccccCc--eEEEEeCCeEEEEecC
Q 016552 321 VVKSDLLKGA--RHAAAGGGRVCAVCEN 346 (387)
Q Consensus 321 v~~~~~~~~~--~~~~~~~g~i~v~gg~ 346 (387)
+..+....+. ...+--.|+|-+-.|+
T Consensus 120 ~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 120 LKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred eeeecccccccceeEecCCCceEEEEcC
Confidence 8776544332 2222234666664443
No 186
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=79.92 E-value=49 Score=30.29 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=61.6
Q ss_pred ccEEEeccCCceeeCCCCCCCCc-ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 165 RPLIFDPICRTWTFGPELVTPRR-WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
.+-.||..+++-+.++....+.. .+-....+..+.+.|..+. ++.-+|..... =-..-.||..-+
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK--------TlKfWD~R~~~----pv~t~~LPeRvY-- 160 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK--------TLKFWDTRSSN----PVATLQLPERVY-- 160 (347)
T ss_pred ceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc--------ceeecccCCCC----eeeeeeccceee--
Confidence 57889999998877764433322 1111111223455555543 33444444332 111112222111
Q ss_pred cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEEeCCeEEEEeCCCCeEEEEe
Q 016552 244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMDEEVLYGIDENSCTLSRYD 312 (387)
Q Consensus 244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~~~~ly~~~~~~~~l~~yd 312 (387)
++-+...+-+++-.++.|.+|+++...=+......|..+.. ..++..++..|.+|.-.|++....
T Consensus 161 ----a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 161 ----AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred ----ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence 11112223333333478999999766432222223444433 334455667778876556555543
No 187
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=79.62 E-value=61 Score=31.29 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=78.2
Q ss_pred EEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEEEeC--CEEEEEecCCCCCCCCCcceEEE
Q 016552 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGCSR--GAVYVASGIGSQFSSDVAKSVEK 218 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~ 218 (387)
++..+++.++.||.+. .+.++|+.|..=... +...|. ....+... +.+|.++- -+++.+
T Consensus 209 avS~Dgkylatgg~d~-------~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~---------Drsvkv 270 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDR-------HVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA---------DRSVKV 270 (479)
T ss_pred EEcCCCcEEEecCCCc-------eEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec---------CCceEE
Confidence 4556788888888543 467888877654433 333342 22222222 35666531 135666
Q ss_pred EECCCCccccCeEEcCCCCCCCccccc---eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeC
Q 016552 219 WDLMNGEKNSRWEKTGELKDGRFSREA---IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE 295 (387)
Q Consensus 219 yd~~~~~~~~~W~~~~~~p~~~~~~~~---~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~ 295 (387)
|+..... ..+. + +.... ...+.--++...+||.+.++..|+....+= .+-. +..-...++++.+
T Consensus 271 w~~~~~s----~vet--l----yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr--g~~~sidcv~~In 337 (479)
T KOG0299|consen 271 WSIDQLS----YVET--L----YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR--GGEGSIDCVAFIN 337 (479)
T ss_pred EehhHhH----HHHH--H----hCCccceeeechhcccceEEeccccceeEEEeccccce-eeee--CCCCCeeeEEEec
Confidence 6665554 2211 1 21000 011222456677787877788877643321 1111 1111234667777
Q ss_pred CeEEEEeCCCCeEEEEeCCCC
Q 016552 296 EVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~~~ 316 (387)
..=|+.|..+|.|..|++.++
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred ccceeeccCCceEEEeeeccc
Confidence 778899988999999998665
No 188
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.41 E-value=12 Score=38.32 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=54.6
Q ss_pred cEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC--------CC
Q 016552 289 PVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA--------AA 360 (387)
Q Consensus 289 ~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~--------~~ 360 (387)
-+.++.++.+.+..+.++.+..|+.++.+-.. .++..--.++....+++.+++|+.++.+.+||.+.. -.
T Consensus 377 Rsl~vS~d~~~~~Sga~~SikiWn~~t~kciR--Ti~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGAGESIKIWNRDTLKCIR--TITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred eEEEeecCceeeeecCCCcEEEEEccCcceeE--EeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence 35667777888887777899999998664332 222222234445567888888888899999999855 25
Q ss_pred CCceEE-eCC
Q 016552 361 PTIFVV-DTP 369 (387)
Q Consensus 361 ~~~W~~-~~p 369 (387)
|.+|.+ ..|
T Consensus 455 gaIWsi~~~p 464 (888)
T KOG0306|consen 455 GAIWSISLSP 464 (888)
T ss_pred cceeeeeecC
Confidence 689998 445
No 189
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=78.80 E-value=36 Score=28.11 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=46.3
Q ss_pred EEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc-cccceEE-EEECCEEEEEeeeC----CeE
Q 016552 192 GCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF-SREAIDA-VGWKGKLCLVNVKG----AEG 265 (387)
Q Consensus 192 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~-~~~~~~~-~~~~g~lyv~gg~~----~~i 265 (387)
+.++|.+|-++..... .....+..||..+++ .....++|.... ....... ++.+++|.++.... -.|
T Consensus 2 V~vnG~~hW~~~~~~~---~~~~~IlsFDl~~E~----F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~I 74 (164)
T PF07734_consen 2 VFVNGALHWLAYDENN---DEKDFILSFDLSTEK----FGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEI 74 (164)
T ss_pred EEECCEEEeeEEecCC---CCceEEEEEeccccc----cCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEE
Confidence 4578888877654331 111268999999999 833334554322 1122223 33477888774322 345
Q ss_pred EEEE---CCCCceeecc
Q 016552 266 AVYD---VVANTWDDMR 279 (387)
Q Consensus 266 ~~yD---~~~~~W~~~~ 279 (387)
++-+ ....+|+++-
T Consensus 75 Wvm~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLF 91 (164)
T ss_pred EEEeeeccCcceEEEEE
Confidence 5544 3367898774
No 190
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=78.79 E-value=63 Score=30.94 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=82.8
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE-ECCEEEEEeee--CCeEEEEEC
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVK--GAEGAVYDV 270 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~-~~g~lyv~gg~--~~~i~~yD~ 270 (387)
.+.++|+..+. .+.+.++|..+++ ....++ .+... . ..++. .++.+|+.... .+.+.+.|.
T Consensus 84 ~~~~vyv~~~~--------~~~v~vid~~~~~---~~~~~~---vG~~P-~-~~~~~~~~~~vYV~n~~~~~~~vsvid~ 147 (381)
T COG3391 84 AGNKVYVTTGD--------SNTVSVIDTATNT---VLGSIP---VGLGP-V-GLAVDPDGKYVYVANAGNGNNTVSVIDA 147 (381)
T ss_pred CCCeEEEecCC--------CCeEEEEcCcccc---eeeEee---eccCC-c-eEEECCCCCEEEEEecccCCceEEEEeC
Confidence 35689998654 3478888877666 133332 11111 1 22332 35589998773 478999999
Q ss_pred CCCceeec-ccc-cccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccc----cccccCceEE-EE-eCCeEEE
Q 016552 271 VANTWDDM-REG-MVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVK----SDLLKGARHA-AA-GGGRVCA 342 (387)
Q Consensus 271 ~~~~W~~~-~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~----~~~~~~~~~~-~~-~~g~i~v 342 (387)
.+++=... +.+ .| .+......++++|+....++.+..+|+++..=.+ .. .+....++.. +. -+.++|+
T Consensus 148 ~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 148 ATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred CCCeEEEEEecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence 98854322 211 12 2233334567799998777899999988874332 22 2222222222 22 3455887
Q ss_pred EecCC--CeEEEEeccCC
Q 016552 343 VCENG--GGIVVVDVKAA 358 (387)
Q Consensus 343 ~gg~~--~~i~~~d~~~~ 358 (387)
.-... ..+..+|..+.
T Consensus 224 ~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 224 ANDGSGSNNVLKIDTATG 241 (381)
T ss_pred EeccCCCceEEEEeCCCc
Confidence 75554 46777776653
No 191
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=78.71 E-value=58 Score=30.53 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEE-EECCEEEEEe-eeCCeEEEEECCCCceeecccccccCCCCcEEE
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV-GWKGKLCLVN-VKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~-~~~g~lyv~g-g~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~ 292 (387)
++.++|.++++ -... ++..... +..+ +-+-.=|++. |.+..+-+||++.++--.--.+-..+ ..+..
T Consensus 174 tikIwDlatg~----Lklt--ltGhi~~---vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~--V~~L~ 242 (460)
T KOG0285|consen 174 TIKIWDLATGQ----LKLT--LTGHIET---VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG--VYCLD 242 (460)
T ss_pred eeEEEEcccCe----EEEe--ecchhhe---eeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce--eEEEe
Confidence 78899999998 3321 1111111 1122 2233345443 45578999999988653222111111 01112
Q ss_pred Ee-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe---CCeEEEEecCCCeEEEEeccCC
Q 016552 293 MD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG---GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~---~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.+ --.+.+.++.+..+.+||+.+.. .|..+...+...+-+.+ +.+| +.|.-...|-++|...+
T Consensus 243 lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 243 LHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAG 309 (460)
T ss_pred ccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccC
Confidence 22 11345556667789999998873 33344444433333333 3443 34344455666676644
No 192
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=77.87 E-value=85 Score=31.92 Aligned_cols=131 Identities=10% Similarity=0.020 Sum_probs=73.6
Q ss_pred EEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCceeecccccccCCC--CcEEE--EeCCeEEEEeCCC
Q 016552 231 EKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR--GPVAA--MDEEVLYGIDENS 305 (387)
Q Consensus 231 ~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~--~~~~~--~~~~~ly~~~~~~ 305 (387)
..+..+|....... +..... +++++++.-....++.++.++.+-.++....+.+-. -..++ -+|+.|-+++ ..
T Consensus 419 ~~v~~~~~~~~~a~-~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~ 496 (691)
T KOG2048|consen 419 INVDDVPLALLDAS-AISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TR 496 (691)
T ss_pred EEeccchhhhccce-eeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe-cc
Confidence 34455665442211 222233 456666653446788999988888777643333111 11222 3566666665 56
Q ss_pred CeEEEEeCCCCceeEccccccccCceEEE--EeCCeEEEEecCCCeEEEEeccCCCCCCceE
Q 016552 306 CTLSRYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 306 ~~l~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~ 365 (387)
+.|++||.++.+-..+....+....+... ...++|.+. -.+++++.||+... +-.+|.
T Consensus 497 g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvva-ts~nQv~efdi~~~-~l~~ws 556 (691)
T KOG2048|consen 497 GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVA-TSNNQVFEFDIEAR-NLTRWS 556 (691)
T ss_pred ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEE-ecCCeEEEEecchh-hhhhhh
Confidence 88999999999877766332222222222 233556665 66778999999422 223566
No 193
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.45 E-value=54 Score=29.47 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=54.0
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEE
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAA 292 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~ 292 (387)
.+.+-|+.++.-. |+.+- ..|+. +.+.++++. .|+|-+...++..+..++ .|..+.-.... ..+.+.
T Consensus 34 ~~~avd~~sG~~~--We~il---g~RiE---~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~~a~~d 102 (354)
T KOG4649|consen 34 IVIAVDPQSGNLI--WEAIL---GVRIE---CSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILETVK--VRAQCD 102 (354)
T ss_pred eEEEecCCCCcEE--eehhh---Cceee---eeeEEECCE-EEEEEccCcEEEEEecchhheeeeeehhhhc--cceEEc
Confidence 5566788887755 98776 23332 556666766 455555556666777766 57655421111 123333
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
..++-+| .+.+++..++.|+.+..
T Consensus 103 ~~~glIy-cgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 103 FDGGLIY-CGSHDGNFYALDPKTYG 126 (354)
T ss_pred CCCceEE-EecCCCcEEEecccccc
Confidence 4454444 55567889999998864
No 194
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.43 E-value=54 Score=29.46 Aligned_cols=177 Identities=13% Similarity=0.031 Sum_probs=95.8
Q ss_pred CccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552 164 TRPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~ 241 (387)
..+..-|+.++ .|+.+ -..|-...+.++++. .|+|-+.. .+...+..|++.. |....--... .
T Consensus 33 ~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~g--------~lYfl~~~tGs~~--w~f~~~~~vk-~ 97 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYSG--------GLYFLCVKTGSQI--WNFVILETVK-V 97 (354)
T ss_pred ceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEccC--------cEEEEEecchhhe--eeeeehhhhc-c
Confidence 35667788877 58763 345666666667766 45554433 4455667776544 7654411100 1
Q ss_pred cccceEEEEECCEEEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCcee
Q 016552 242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWK 319 (387)
Q Consensus 242 ~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~ 319 (387)
. ..+..-.|-||+ |.++...++.|+.+.. |+..-. ..-+.+|.++..++.||+... .|.+.+-.++...-.
T Consensus 98 ~---a~~d~~~glIyc-gshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~~sly~a~t-~G~vlavt~~~~~~~ 170 (354)
T KOG4649|consen 98 R---AQCDFDGGLIYC-GSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGDGSLYAAIT-AGAVLAVTKNPYSST 170 (354)
T ss_pred c---eEEcCCCceEEE-ecCCCcEEEecccccceEEecccC--CceeccceecCCCceEEEEec-cceEEEEccCCCCcc
Confidence 0 222223455664 4444578888988774 653322 122235666666778888642 466776666554333
Q ss_pred Ecc----ccc-----ccc-CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 320 EVV----KSD-----LLK-GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 320 ~v~----~~~-----~~~-~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
++. .-| .-. ........+|.+.-+...|..++ .+.++ |.+|.-
T Consensus 171 ~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvw--r~~t~--GpIf~~ 223 (354)
T KOG4649|consen 171 EFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVW--RPATK--GPIFME 223 (354)
T ss_pred eehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEE--eecCC--Cceecc
Confidence 322 112 111 23445567888888865565555 44432 337774
No 195
>PTZ00420 coronin; Provisional
Probab=76.52 E-value=92 Score=31.66 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=64.9
Q ss_pred ccEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 165 RPLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
.+.+||..+.+=.. .+..+....+++ ..+|.+++.++.+. .+.+||+.+.+. -..+........
T Consensus 149 tIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D~--------~IrIwD~Rsg~~---i~tl~gH~g~~~-- 213 (568)
T PTZ00420 149 FVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVGK--------HMHIIDPRKQEI---ASSFHIHDGGKN-- 213 (568)
T ss_pred eEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecCC--------EEEEEECCCCcE---EEEEecccCCce--
Confidence 57888988764211 111111111222 23677777766443 789999987761 111111100100
Q ss_pred cceEEEE-----ECCEEEEEeeeC----CeEEEEECCC-CceeecccccccCCCCc---EEEEeCCeEEEEeCCCCeEEE
Q 016552 244 EAIDAVG-----WKGKLCLVNVKG----AEGAVYDVVA-NTWDDMREGMVRGWRGP---VAAMDEEVLYGIDENSCTLSR 310 (387)
Q Consensus 244 ~~~~~~~-----~~g~lyv~gg~~----~~i~~yD~~~-~~W~~~~~~~~~~~~~~---~~~~~~~~ly~~~~~~~~l~~ 310 (387)
...+. -++...+.+|.+ +.+..+|+.. ..-...-. .....+. ......|.+|+.|..++.|..
T Consensus 214 --s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~--ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 214 --TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS--IDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred --eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE--ecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 11111 244444554544 3688999874 22110000 0011111 111224788888877888999
Q ss_pred EeCCCCc
Q 016552 311 YDEVMDD 317 (387)
Q Consensus 311 yd~~~~~ 317 (387)
|+...+.
T Consensus 290 ~e~~~~~ 296 (568)
T PTZ00420 290 YQHSLGS 296 (568)
T ss_pred EEccCCc
Confidence 9987664
No 196
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=76.31 E-value=62 Score=29.57 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=12.9
Q ss_pred CeEEEEECCCCceeeccc
Q 016552 263 AEGAVYDVVANTWDDMRE 280 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~ 280 (387)
.....|-.++-.|-.++.
T Consensus 97 ~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CccceeeeeeeEEeeecC
Confidence 466778888888876654
No 197
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=76.01 E-value=51 Score=32.90 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=57.2
Q ss_pred CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccc-------cc
Q 016552 253 GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVK-------SD 325 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~-------~~ 325 (387)
.-||+.| .+..++.++++.+.|-..-..-..+.....+.-++ .|+.+|+..|.+..||+....=...-. .|
T Consensus 146 cDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 146 CDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred ccEEEee-cCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence 3477654 44589999999999843211000111111222233 488888888999999998764322111 11
Q ss_pred cc--cCceEEEEeCC-eEEE-EecCCCeEEEEeccCC
Q 016552 326 LL--KGARHAAAGGG-RVCA-VCENGGGIVVVDVKAA 358 (387)
Q Consensus 326 ~~--~~~~~~~~~~g-~i~v-~gg~~~~i~~~d~~~~ 358 (387)
.. .....+....+ -|-| +|-..+.+++||+.+.
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 11 11233344443 5555 4334678899998855
No 198
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=75.54 E-value=69 Score=29.71 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=61.2
Q ss_pred eEEEEECCEEEEEeee-----C------CeEEEEECCCCceeecccccccCCCCcEEE--EeCCeEEEEeCCCCeEEEEe
Q 016552 246 IDAVGWKGKLCLVNVK-----G------AEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSRYD 312 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~-----~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~~~ly~~~~~~~~l~~yd 312 (387)
-..+.-+|.+|+-... . ..++.||+ .+...++-.... .. ..+++ -.+..||+.+...+.+++|+
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~-~~-~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL-TI-PNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE-Ee-cCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3345557888875433 1 56888888 455555433211 11 12233 23447888887678899988
Q ss_pred CCC------C--ceeEccccccccCceEEEEeCCeEEEEec-CCCeEEEEeccCC
Q 016552 313 EVM------D--DWKEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAA 358 (387)
Q Consensus 313 ~~~------~--~W~~v~~~~~~~~~~~~~~~~g~i~v~gg-~~~~i~~~d~~~~ 358 (387)
.+. + .+......+... -..++--+|.|++... ++..+.+|++..+
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~P-DG~~vDadG~lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLP-DGMAVDADGNLWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCC-CceEEeCCCCEEEecccCCceEEEECCCCc
Confidence 763 1 111111111122 2335667888996544 4568999999843
No 199
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=75.48 E-value=51 Score=31.40 Aligned_cols=35 Identities=20% Similarity=0.521 Sum_probs=32.5
Q ss_pred CCCCChHHHHHHHhhhcC----chhhhhhhHhhhhhhcC
Q 016552 42 LLPGLPDHIAHLCLSHVH----PSILHNVCHSWRRLIYS 76 (387)
Q Consensus 42 ~~~~LPddl~~~iL~rLP----l~~~r~VcK~W~~li~~ 76 (387)
.|..||+||++.|..||| +.|+|+||++||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 589999999999999999 88999999999998764
No 200
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.23 E-value=68 Score=29.53 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=33.9
Q ss_pred EEeCCCCeEEEEeCCCCceeEccccc-cccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 300 GIDENSCTLSRYDEVMDDWKEVVKSD-LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 300 ~~~~~~~~l~~yd~~~~~W~~v~~~~-~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+-|..+..+.+||..+..= .+.... ....+-..+..++.|+.+--++-.+-+||++..
T Consensus 372 VSgSDDrTvKvWdLrNMRs-plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRS-PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eecCCCceEEEeeeccccC-cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 4444456789998865421 111110 111233345566778888778888999999854
No 201
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=74.85 E-value=39 Score=34.62 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=63.0
Q ss_pred EECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCc--EEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccc
Q 016552 250 GWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGP--VAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSD 325 (387)
Q Consensus 250 ~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~--~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~ 325 (387)
+.-+.=|+.+|.. ..+...|..++.=..+=. |..++ ++++. .|+-...|+..+.|..||..+.+ .+..+.
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~----GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--~v~~l~ 616 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT----GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--LVKQLK 616 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCCcEEEEec----CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--chhhhh
Confidence 4456667777744 667777777665433321 22222 33332 34444445567889999998862 333333
Q ss_pred cccCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 326 LLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 326 ~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
...+. ......+|.+++.||.++.+-+||+.+.
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 33333 2233578999999999999999998854
No 202
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=74.47 E-value=67 Score=29.54 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=54.3
Q ss_pred EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccc-cccccCceE
Q 016552 255 LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVK-SDLLKGARH 332 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~-~~~~~~~~~ 332 (387)
|.+-+..++.+-.||...-+=++.-..+.+.....++.. -.|...++|.....+..||.++-.--.-.. .....++.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 444455557788888764321111000111111112222 245556666556689999998764332222 223445566
Q ss_pred EEEe--CCeEEEEecCCCeEEEEecc
Q 016552 333 AAAG--GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 333 ~~~~--~g~i~v~gg~~~~i~~~d~~ 356 (387)
.|.+ .++||+.|...+.|-+||--
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccc
Confidence 6655 48899998776667666643
No 203
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=74.25 E-value=64 Score=28.77 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE---eCCeEEEEeCCCCeEEEEeCC
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM---DEEVLYGIDENSCTLSRYDEV 314 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~---~~~~ly~~~~~~~~l~~yd~~ 314 (387)
+-.+||.||.+..+..||-.|+.= +.. ...+..++..++ -+|.+|..|.++|.|..|.+.
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeE--i~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEE--IGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCceEEecCcceEEEEEeccCCce--eee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 446888888877788889888752 221 234555565554 488999999999998887653
No 204
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=74.21 E-value=73 Score=29.40 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=64.0
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceee----cccccccCCCCcEEEEeCCeEEEEeC-------------CCCeEEEEeCC
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDD----MREGMVRGWRGPVAAMDEEVLYGIDE-------------NSCTLSRYDEV 314 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~----~~~~~~~~~~~~~~~~~~~~ly~~~~-------------~~~~l~~yd~~ 314 (387)
++.||...-+...|.+||..-..=.. .++.+|.+..-..+...+++|||.-. ..|.|-+||+.
T Consensus 151 ~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~ 230 (336)
T TIGR03118 151 GDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN 230 (336)
T ss_pred CceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC
Confidence 56788877766889999854322110 11224444444456677899999631 12468999999
Q ss_pred CCceeEccccccccC-------ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 315 MDDWKEVVKSDLLKG-------ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 315 ~~~W~~v~~~~~~~~-------~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.+-=+++..-..+-. +.......|.|+|=-=+...|-+||+.+.
T Consensus 231 G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 987777754332222 22233445666553223577899998755
No 205
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=74.20 E-value=67 Score=28.97 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=67.5
Q ss_pred EEEEeeeCCeEEEEECC-CCceeecccccccCCCC--cEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEcccccccc-
Q 016552 255 LCLVNVKGAEGAVYDVV-ANTWDDMREGMVRGWRG--PVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK- 328 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~-~~~W~~~~~~~~~~~~~--~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~- 328 (387)
|.+-.+++++|-+|+-. .+.|.-++. + .+..+ -+.++. |.+|.... .++.+. .|......+...
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~t-l-~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~-------Iw~~~~~~~~~~s 233 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQT-L-DGHENTVWSLAFDNIGSRLVSCS-DDGTVS-------IWRLYTDLSGMHS 233 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEE-e-cCccceEEEEEecCCCceEEEec-CCcceE-------eeeeccCcchhcc
Confidence 55556666788888776 788987664 1 11111 111111 22332221 222222 355445555443
Q ss_pred CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEe----CCCCceeEEEEEccCCCCC
Q 016552 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD----TPLGFEALSVHIMPRMSKI 386 (387)
Q Consensus 329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~----~p~~~~~~~~~~~~~~~~~ 386 (387)
+....+..++-++.-+|+...|.+|..+..+.+..|.+. ..++.+.-+++++|+++.+
T Consensus 234 r~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 234 RALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred cceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence 333334444455555566777888877766666789853 3356688999999976653
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.10 E-value=77 Score=30.01 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=55.3
Q ss_pred EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC----ccccceEEEEECC--E-EEEEeeeCCeEEEEE
Q 016552 197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR----FSREAIDAVGWKG--K-LCLVNVKGAEGAVYD 269 (387)
Q Consensus 197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~~g--~-lyv~gg~~~~i~~yD 269 (387)
.|+.+||..+ .+.+++||+++.+.- |+.-. .|..+ .+.......++.| . -++..-....+-.||
T Consensus 162 ~Iva~GGke~------~n~lkiwdle~~~qi--w~aKN-vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 162 YIVATGGKEN------INELKIWDLEQSKQI--WSAKN-VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred ceEecCchhc------ccceeeeecccceee--eeccC-CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence 4666687643 457788988877543 77543 11111 1111123444555 2 222222225788999
Q ss_pred CCCCceeeccc--ccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552 270 VVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 270 ~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
+..+. +.+.. .+..+....+....++.|| ++...+.+..||..++.
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy-~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTGLTPSGNFIY-TGNTKGQLAKFDLRGGK 280 (412)
T ss_pred CcccC-cceeEeccccCcceeeeecCCCcEEE-EecccchhheecccCce
Confidence 98654 22221 0111111222223344444 44446789999998774
No 207
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.78 E-value=73 Score=29.21 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=81.9
Q ss_pred ceEEEEECCEEEEEecccCCC---------------CCCCCccEEEeccCCc----eeeCCCCCCCCcce--eEE----E
Q 016552 139 PVQLVSLSGKLILLAATTHNF---------------NPALTRPLIFDPICRT----WTFGPELVTPRRWC--AAG----C 193 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~---------------~~~~~~~~vyd~~t~~----W~~l~~~p~~r~~~--~~~----~ 193 (387)
.+.++..-+....+||+-... ...-+.++.||..+++ |.+-- ..++..+ .+- -
T Consensus 38 TYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesi--h~~~~WaGEVSdIlYdP 115 (339)
T PF09910_consen 38 TYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESI--HDKTKWAGEVSDILYDP 115 (339)
T ss_pred cceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEeccc--CCccccccchhheeeCC
Confidence 356665555555567764210 1124567889988886 55422 2222211 111 2
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeee--C-CeEEEEEC
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK--G-AEGAVYDV 270 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~--~-~~i~~yD~ 270 (387)
.+++|+++-+-+ ...--++..|..++. =+.+..-|... .+.+.|-.+|-+... + ..+++||+
T Consensus 116 ~~D~LLlAR~DG-----h~nLGvy~ldr~~g~----~~~L~~~ps~K------G~~~~D~a~F~i~~~~~g~~~i~~~Dl 180 (339)
T PF09910_consen 116 YEDRLLLARADG-----HANLGVYSLDRRTGK----AEKLSSNPSLK------GTLVHDYACFGINNFHKGVSGIHCLDL 180 (339)
T ss_pred CcCEEEEEecCC-----cceeeeEEEcccCCc----eeeccCCCCcC------ceEeeeeEEEeccccccCCceEEEEEc
Confidence 357888774321 111245666777777 56665544332 123333333322111 1 78999999
Q ss_pred CCCce--eeccccc-ccC----C-CCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 271 VANTW--DDMREGM-VRG----W-RGPVAAMDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 271 ~~~~W--~~~~~~~-~~~----~-~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
.+++| +..+... ..+ + ....++...+++|.+- .|.+.+.||..+
T Consensus 181 i~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~--rGGi~vgnP~~~ 232 (339)
T PF09910_consen 181 ISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV--RGGIFVGNPYNG 232 (339)
T ss_pred cCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE--eccEEEeCCCCC
Confidence 99999 4433211 111 1 1122333345777763 467888888744
No 208
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.50 E-value=9.6 Score=28.09 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=30.2
Q ss_pred CeEEEEECCCCceeecccccccCCCCcEEEE-eCCe-EEEEeCCCCeEEEEeCC
Q 016552 263 AEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV-LYGIDENSCTLSRYDEV 314 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~-ly~~~~~~~~l~~yd~~ 314 (387)
..+..|||.+++.+.+..++..+ .++++ .++. |++......+|..|-.+
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fp---NGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFP---NGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---EEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred cCEEEEECCCCeEEEehhCCCcc---CeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 67899999999998876543322 23333 3444 44444334578777654
No 209
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=73.27 E-value=57 Score=27.77 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=17.0
Q ss_pred CCEEEEEeeeCCeEEEEECCCCc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
+|++|++.|. ..+.||..+.+
T Consensus 158 ~~~~yfF~g~--~y~~~d~~~~~ 178 (194)
T cd00094 158 DGYYYFFKGD--QYWRFDPRSKE 178 (194)
T ss_pred CCcEEEEECC--EEEEEeCccce
Confidence 4899999774 68999988765
No 210
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=1e+02 Score=30.47 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=83.7
Q ss_pred cEEEeccCCceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 166 PLIFDPICRTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
+|.+|..+..-..+-++. +.....+.. +|....+|-.+. .+++||..+.. .+..|.....
T Consensus 199 vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g--------~v~iwD~~~~k------~~~~~~~~h~-- 260 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDG--------TVQIWDVKEQK------KTRTLRGSHA-- 260 (484)
T ss_pred EEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCC--------eEEEEehhhcc------ccccccCCcC--
Confidence 344444444444443333 222233332 456666654333 78899987766 1222221011
Q ss_pred cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccc-cCCCCcEEE---E-eCCeEEEEeCCCCeEEEEeCCCCce
Q 016552 244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMV-RGWRGPVAA---M-DEEVLYGIDENSCTLSRYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~-~~~~~~~~~---~-~~~~ly~~~~~~~~l~~yd~~~~~W 318 (387)
....+..-++.+...|..+..|..+|.....=. +. .......++ . .++..+.-||.++.+.+||.....+
T Consensus 261 ~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~-----~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 261 SRVGSLAWNSSVLSSGSRDGKILNHDVRISQHV-----VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred ceeEEEeccCceEEEecCCCcEEEEEEecchhh-----hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 113344556677777777678888887543210 01 010111122 2 2445556666778899999822221
Q ss_pred eEccccccccCceEE---EEeCCeEEEEecCC--CeEEEEeccCC
Q 016552 319 KEVVKSDLLKGARHA---AAGGGRVCAVCENG--GGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~---~~~~g~i~v~gg~~--~~i~~~d~~~~ 358 (387)
.. ..-....+..+ .-+...|+.+||+. .-|-++|+.++
T Consensus 336 ~~--~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 336 KF--TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred cE--EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 11 11112222222 23467788887763 56788888865
No 211
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=72.43 E-value=27 Score=34.17 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
+++-.++||... ++-++|+.+-+ =+.-..++..-..+ .+-++..|.++++..-.+..|.+||+...+
T Consensus 476 dgrtLivGGeas--------tlsiWDLAapT----prikaeltssapaC-yALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGGEAS--------TLSIWDLAAPT----PRIKAELTSSAPAC-YALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred CCceEEeccccc--------eeeeeeccCCC----cchhhhcCCcchhh-hhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 677778888733 66777777766 33323333211110 122344577877665555689999998876
Q ss_pred eeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCC
Q 016552 275 WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 275 W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
-..--.+.+++ ..++.+. +|.-.-.||-++.+.+||..+.
T Consensus 543 ~VrqfqGhtDG--ascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 543 LVRQFQGHTDG--ASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred eeecccCCCCC--ceeEEecCCCceeecCCCccceeehhhhhh
Confidence 43222223333 2233333 2333334555678899987654
No 212
>PRK10115 protease 2; Provisional
Probab=72.22 E-value=1.3e+02 Score=31.43 Aligned_cols=181 Identities=7% Similarity=-0.074 Sum_probs=89.3
Q ss_pred CCccEEEeccCCcee--eCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEEC--CCCccccCeEEcCCCC
Q 016552 163 LTRPLIFDPICRTWT--FGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDL--MNGEKNSRWEKTGELK 237 (387)
Q Consensus 163 ~~~~~vyd~~t~~W~--~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~~~~~W~~~~~~p 237 (387)
..+++.++..|+.-. .+-.-+........... +++..++..... ..+.++.|+. .+.. |..+.+.+
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~----~~~~~~~~ 268 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAE----PFVFLPRR 268 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCC----ceEEEECC
Confidence 367888999888322 22111111112222222 444333433222 2246777774 2344 44333222
Q ss_pred CCCccccceEEEEECCEEEEEeeeC---CeEEEEECC-CCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEE
Q 016552 238 DGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVV-ANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRY 311 (387)
Q Consensus 238 ~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~-~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~y 311 (387)
... .......++.+|+....+ ..+...++. ++.|+.+-.. .....-..+.+.++.|++.....+ .++.+
T Consensus 269 ~~~----~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 269 KDH----EYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFTDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CCC----EEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 221 122334467888886543 557777777 6789887642 222223345556778877765444 57888
Q ss_pred eCCCCceeEcc-ccccccCceEEEE--eC-CeEEEEecC---CCeEEEEeccCC
Q 016552 312 DEVMDDWKEVV-KSDLLKGARHAAA--GG-GRVCAVCEN---GGGIVVVDVKAA 358 (387)
Q Consensus 312 d~~~~~W~~v~-~~~~~~~~~~~~~--~~-g~i~v~gg~---~~~i~~~d~~~~ 358 (387)
|..++....+. ..+... ...... .+ +.+++.-.. -..++.+|..+.
T Consensus 344 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 344 NRKTREVIGIAFDDPAYV-TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred cCCCCceEEecCCCCceE-eeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 87666555443 111111 100011 22 344443222 367889998865
No 213
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=72.03 E-value=1.1e+02 Score=30.35 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=68.6
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECC
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVV 271 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~ 271 (387)
.++...++||.+. .+++|.+.-+. -.+...+...+.. .+.+. -|+++++.+...+.+..||.+
T Consensus 453 ~~~~~vaVGG~Dg--------kvhvysl~g~~----l~ee~~~~~h~a~---iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 453 PDGSEVAVGGQDG--------KVHVYSLSGDE----LKEEAKLLEHRAA---ITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred CCCCEEEEecccc--------eEEEEEecCCc----ccceeeeecccCC---ceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 3556677777755 58899887766 3333222222221 22333 366655555555789999988
Q ss_pred CCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCce-eEccccccccCceEEEEeCCeEEEEecCCCe
Q 016552 272 ANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDW-KEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349 (387)
Q Consensus 272 ~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W-~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~ 349 (387)
++.=....-..-.. +..+++ --+++++..|.-+-.+.+|+.+.-.= ..+.. -...+...+.-.++.-++-.|....
T Consensus 518 s~~~~~~~w~FHta-kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn-AH~~gVn~v~wlde~tvvSsG~Da~ 595 (603)
T KOG0318|consen 518 SREVKTNRWAFHTA-KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN-AHLGGVNSVAWLDESTVVSSGQDAN 595 (603)
T ss_pred cCceecceeeeeee-eEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc-ccccCceeEEEecCceEEeccCcce
Confidence 76431111000000 011122 12555555554455688888754311 11111 1122233344455555554454444
Q ss_pred EEEEe
Q 016552 350 IVVVD 354 (387)
Q Consensus 350 i~~~d 354 (387)
|-+++
T Consensus 596 iK~W~ 600 (603)
T KOG0318|consen 596 IKVWN 600 (603)
T ss_pred eEEec
Confidence 54444
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=71.78 E-value=95 Score=29.62 Aligned_cols=131 Identities=17% Similarity=0.074 Sum_probs=66.7
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECC-EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
+.+.+.|..+.+. -.+++... . .|.... -|| .+|+.+. +..+.++|+.+++ .+.. ...+....+
T Consensus 16 ~~v~viD~~t~~~---~~~i~~~~---~---~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~-i~~G~~~~~ 82 (369)
T PF02239_consen 16 GSVAVIDGATNKV---VARIPTGG---A---PHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVAT-IKVGGNPRG 82 (369)
T ss_dssp TEEEEEETTT-SE---EEEEE-ST---T---EEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEE-EE-SSEEEE
T ss_pred CEEEEEECCCCeE---EEEEcCCC---C---ceeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEE-EecCCCcce
Confidence 4778888887761 22333111 1 133332 345 4788754 4589999999987 3322 222332233
Q ss_pred EEE--eCCeEEEEeCCCCeEEEEeCCCCceeE-cc--cccc--c-cCceEEE-EeCCeEEEEe-cCCCeEEEEeccC
Q 016552 291 AAM--DEEVLYGIDENSCTLSRYDEVMDDWKE-VV--KSDL--L-KGARHAA-AGGGRVCAVC-ENGGGIVVVDVKA 357 (387)
Q Consensus 291 ~~~--~~~~ly~~~~~~~~l~~yd~~~~~W~~-v~--~~~~--~-~~~~~~~-~~~g~i~v~g-g~~~~i~~~d~~~ 357 (387)
+++ .|..+|+-....+.+.++|.++.+=.+ +. ..+. . ....+++ +..+..|++. ...+.++++|...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 443 344455554457889999998864332 21 1111 1 1112333 3455656665 3467888888764
No 215
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=71.57 E-value=75 Score=28.37 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=74.3
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecc-cccccCCCCcEEE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVAA 292 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~ 292 (387)
.+|..+|..+++ =.+.-.++.+.. ..-+.-+|++..+. ++..+.-.|+.+-. .+. ..+|.....++.-
T Consensus 165 ~tVRLWD~rTgt----~v~sL~~~s~Vt----SlEvs~dG~ilTia-~gssV~Fwdaksf~--~lKs~k~P~nV~SASL~ 233 (334)
T KOG0278|consen 165 KTVRLWDHRTGT----EVQSLEFNSPVT----SLEVSQDGRILTIA-YGSSVKFWDAKSFG--LLKSYKMPCNVESASLH 233 (334)
T ss_pred CceEEEEeccCc----EEEEEecCCCCc----ceeeccCCCEEEEe-cCceeEEecccccc--ceeeccCcccccccccc
Confidence 477888888887 322222222211 11234467765443 23345555554322 111 1133332222222
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCceEEE--EeCCeEEEEecCCCeEEEEeccCCCCCCceE
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~ 365 (387)
- +..+|+.|++...++.||..++. ++... ....++..++ .-+|.+|..|...+.|-++.+.-+.....|.
T Consensus 234 P-~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~ 306 (334)
T KOG0278|consen 234 P-KKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWK 306 (334)
T ss_pred C-CCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhcc
Confidence 2 34689999888899999998883 43332 2223333333 4689999998877767666665443334676
No 216
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=71.39 E-value=95 Score=29.47 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=77.6
Q ss_pred CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccc--eEEEEECCEEEEEeeeCCeEEEEECCC
Q 016552 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA--IDAVGWKGKLCLVNVKGAEGAVYDVVA 272 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~--~~~~~~~g~lyv~gg~~~~i~~yD~~~ 272 (387)
+++..+.|+.+. ++..+|+.|.++ +-.-.-.... +.+-.-||+....|..++.|..|||++
T Consensus 126 ~g~~l~tGsGD~--------TvR~WD~~TeTp---------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 126 TGSRLVTGSGDT--------TVRLWDLDTETP---------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred CCceEEecCCCc--------eEEeeccCCCCc---------ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 456666665543 778888888871 1000000000 112234777766665668899999988
Q ss_pred CceeecccccccCCC--CcEEE------EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEe
Q 016552 273 NTWDDMREGMVRGWR--GPVAA------MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVC 344 (387)
Q Consensus 273 ~~W~~~~~~~~~~~~--~~~~~------~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~g 344 (387)
++=. .. ...+.. ..+.+ +-+.+.+.-...+|.+.+||...++-.. .+-....+..|+..+|.=+|..
T Consensus 189 g~~~--g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~--~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 189 GQQI--GR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR--TLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred CCcc--cc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE--EeccCccceEEEEEcCCceEEe
Confidence 7521 11 001110 00111 1233444444457889999987764332 2334555677888887777766
Q ss_pred cC-CCeEEEEeccC
Q 016552 345 EN-GGGIVVVDVKA 357 (387)
Q Consensus 345 g~-~~~i~~~d~~~ 357 (387)
|. ...|-+|+...
T Consensus 264 gS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 264 GSQDRTIKVWRALD 277 (480)
T ss_pred cCCCceEEEEEccc
Confidence 54 45677777765
No 217
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=71.07 E-value=48 Score=30.45 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=59.2
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE---eCCeEEEEeCCCCeEEEEeCCCCceeEccccccc
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM---DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~---~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~ 327 (387)
-.|.+.++|-.-..+..||..|-+--.-.. +.....+....+ ..++||+.+..+|.|..||=..+.-.. .....
T Consensus 226 PsGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~--t~~~A 302 (430)
T KOG0640|consen 226 PSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR--TIGNA 302 (430)
T ss_pred CCCceEEEecCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH--HHHhh
Confidence 356666665555788999998876533322 222322222222 357899999888999999865553322 12122
Q ss_pred cC-c--eEE-EEeCCeEEEEecCCCeEEEEeccCC
Q 016552 328 KG-A--RHA-AAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 328 ~~-~--~~~-~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.+ . +.+ ..-+++-++-.|...-+.+|+++++
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 21 1 222 2335555555555666677777755
No 218
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=89 Score=28.64 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=31.1
Q ss_pred EEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEeCCCCceeEEEEEccC
Q 016552 332 HAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPR 382 (387)
Q Consensus 332 ~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~~p~~~~~~~~~~~~~ 382 (387)
++..-+++-++.|.+.+.|.+|+.++..+-..| ..|.+....+++++|+
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~--~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL--RGPNGGPVSCVRFNPR 286 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe--cCCCCCCccccccCCc
Confidence 344567777777667789999999866222222 2224556667777776
No 219
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.58 E-value=95 Score=29.70 Aligned_cols=132 Identities=11% Similarity=0.101 Sum_probs=56.2
Q ss_pred eEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECCE-EEEEeee----CCeEEEEECCCCceeecccccccCCCC
Q 016552 215 SVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGK-LCLVNVK----GAEGAVYDVVANTWDDMREGMVRGWRG 288 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g~-lyv~gg~----~~~i~~yD~~~~~W~~~~~~~~~~~~~ 288 (387)
.+|.-|..... ...+- .++.... .|.--.-||+ |+..+.. ..-+..||+++..=+.+.. ++ ++.
T Consensus 217 RiW~i~~dg~~----~~~v~~~~~~e~~---gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p--~~~ 286 (386)
T PF14583_consen 217 RIWTINTDGSN----VKKVHRRMEGESV---GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MP--WCS 286 (386)
T ss_dssp SEEEEETTS-------EESS---TTEEE---EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-E---SEE
T ss_pred EEEEEEcCCCc----ceeeecCCCCccc---ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-CC--cee
Confidence 67888876555 44443 3222211 2434445665 3333221 1567889999874322322 22 334
Q ss_pred cEEEEeCCeEEEEeCCCC----------------eEEEEeCCCCc----------eeEccccccccCceEEEEeCCeEEE
Q 016552 289 PVAAMDEEVLYGIDENSC----------------TLSRYDEVMDD----------WKEVVKSDLLKGARHAAAGGGRVCA 342 (387)
Q Consensus 289 ~~~~~~~~~ly~~~~~~~----------------~l~~yd~~~~~----------W~~v~~~~~~~~~~~~~~~~g~i~v 342 (387)
+-....+|+|++-+|.+. -|+++|++++. |..+........++....-+|+-+|
T Consensus 287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~Vl 366 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVL 366 (386)
T ss_dssp EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEE
T ss_pred eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEE
Confidence 555556778877665321 24456665544 3322222223346667778888777
Q ss_pred EecC---CCeEEEEecc
Q 016552 343 VCEN---GGGIVVVDVK 356 (387)
Q Consensus 343 ~gg~---~~~i~~~d~~ 356 (387)
+..+ ...|+..++.
T Consensus 367 F~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 367 FRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEE-TTSS-EEEEEE--
T ss_pred EECCCCCCccEEEEeCc
Confidence 7653 3456666654
No 220
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=69.21 E-value=88 Score=30.51 Aligned_cols=106 Identities=11% Similarity=0.024 Sum_probs=56.1
Q ss_pred EECCEEEEEeee--C-CeEEEEECCCCceeecccccccCC-CCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCceeEccc
Q 016552 250 GWKGKLCLVNVK--G-AEGAVYDVVANTWDDMREGMVRGW-RGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDWKEVVK 323 (387)
Q Consensus 250 ~~~g~lyv~gg~--~-~~i~~yD~~~~~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~ 323 (387)
.-||+..++... + .++++||..+.+=..+.. ..+. ..++..-.|.+|++.....| .|+.||+++..=+.+..
T Consensus 246 spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 246 SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCCCCEEEEEECCCCCccEEEEcCCCCcceeccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 335654444332 2 679999998876222222 1111 14455555667776654444 59999999886665553
Q ss_pred cccccCceEEEEeCCe-EEEEec--CCCeEEEEeccCC
Q 016552 324 SDLLKGARHAAAGGGR-VCAVCE--NGGGIVVVDVKAA 358 (387)
Q Consensus 324 ~~~~~~~~~~~~~~g~-i~v~gg--~~~~i~~~d~~~~ 358 (387)
-..... +-...-+|+ |.+.+. +..++..+|+.+.
T Consensus 324 ~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 324 SGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred cCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 322222 222333444 333431 2245777777654
No 221
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=68.90 E-value=88 Score=30.46 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=63.9
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEE
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAA 292 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~ 292 (387)
.+..+|.+|++ =...-.+....+ +.-.--++ .++++|+....|..+|..++.-. +....+ +--..-..
T Consensus 281 ~lKlwDtETG~----~~~~f~~~~~~~----cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL--g~i~~i~F 350 (503)
T KOG0282|consen 281 FLKLWDTETGQ----VLSRFHLDKVPT----CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL--GAILDITF 350 (503)
T ss_pred eeeeeccccce----EEEEEecCCCce----eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh--hheeeeEE
Confidence 66778988888 332221111101 11222244 78999998889999999887621 111100 00011122
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceeEc------cccccc----cC-ceEEEEeCCeEEEEec
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMDDWKEV------VKSDLL----KG-ARHAAAGGGRVCAVCE 345 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~~v------~~~~~~----~~-~~~~~~~~g~i~v~gg 345 (387)
+.+|+-|+...+.+.+.+|+.....=.+. -.+|.. .+ .+++-.++++|++++-
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 34566666655566777777554422221 123321 11 3555578999999974
No 222
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=68.30 E-value=47 Score=32.23 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=40.6
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
+|.-++..+++..+-.+|.+|++-..-- ..+..-.++- ..+..+|+.|+.+++|..||..+++
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRF---HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEE---ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 5556666677777888999998653221 1111001111 1234899999999999999998875
No 223
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.51 E-value=91 Score=27.77 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEEEeeeCCeEEEEECCCCceeecccc-cccCC-CCcE--EEEeCCeEEEEeC-CCCeEEEE--eCCCCceeEcccccc
Q 016552 254 KLCLVNVKGAEGAVYDVVANTWDDMREG-MVRGW-RGPV--AAMDEEVLYGIDE-NSCTLSRY--DEVMDDWKEVVKSDL 326 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~-~~~~~-~~~~--~~~~~~~ly~~~~-~~~~l~~y--d~~~~~W~~v~~~~~ 326 (387)
+-++-||.++.+-+.+...++|..-... --..| +..+ ..+.-.+-++..+ .++.+..| +.+...|+.-..-+.
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence 3456677776666666667788643310 00111 1001 1111123333332 35565555 556678986443332
Q ss_pred ccC-ceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552 327 LKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 327 ~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~ 366 (387)
+.. -...-...|.++-++++++.+.++..+.. .+|+.
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~---Gkw~~ 293 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD---GKWEE 293 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeCCC---CcEEE
Confidence 222 23344667888888888888988877644 36874
No 224
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.24 E-value=64 Score=28.06 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=46.0
Q ss_pred eEEEEECCEEEEEeee-C-CeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC
Q 016552 246 IDAVGWKGKLCLVNVK-G-AEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVM 315 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~-~-~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~ 315 (387)
......||.+|.-.|. + ..+.++|++++ .|++.-+ +....+-..+..++.+|.+.-..+.-+.||..+
T Consensus 49 QGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 49 QGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred cceeeeCCEEEEeccccccceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEeccceeEEEChHH
Confidence 3355668887776553 3 78999999966 4654322 233445667778899999987667777777643
No 225
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=98 Score=27.59 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=32.3
Q ss_pred EEEEECCCCceeecc-cccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceeEccc
Q 016552 265 GAVYDVVANTWDDMR-EGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD-DWKEVVK 323 (387)
Q Consensus 265 i~~yD~~~~~W~~~~-~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~-~W~~v~~ 323 (387)
|+.-+-+.+.|+... ...+......+=...|+ +..+++.++++.+|-+..+ +|+++..
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 344455667887543 11222211222224454 4555555778888888765 8999865
No 226
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=65.21 E-value=1.3e+02 Score=28.83 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=98.4
Q ss_pred CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCC-C--CCCCcceEEEEEC
Q 016552 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQ-F--SSDVAKSVEKWDL 221 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~-~--~~~~~~~v~~yd~ 221 (387)
+++.++++-..+ ......++++|..|++...- .++...... .+-. +++.++....+.. . ....-..+..+..
T Consensus 134 dg~~la~~~s~~--G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 134 DGKRLAYSLSDG--GSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp TSSEEEEEEEET--TSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred CCCEEEEEecCC--CCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 566666553222 23335689999999954321 111111111 2222 3333333332221 0 0112456777777
Q ss_pred CCCccccCeE--EcCCCCCCCccccceEEEEECCEEEEEee---eC-CeEEEEECCCC-----ceeecccccccCCCCcE
Q 016552 222 MNGEKNSRWE--KTGELKDGRFSREAIDAVGWKGKLCLVNV---KG-AEGAVYDVVAN-----TWDDMREGMVRGWRGPV 290 (387)
Q Consensus 222 ~~~~~~~~W~--~~~~~p~~~~~~~~~~~~~~~g~lyv~gg---~~-~~i~~yD~~~~-----~W~~~~~~~~~~~~~~~ 290 (387)
.+.. -. .+-..+.+.+. .......-+++..++.. .. ..++..|.... .|..+..... + ....
T Consensus 210 gt~~----~~d~lvfe~~~~~~~-~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-~-~~~~ 282 (414)
T PF02897_consen 210 GTPQ----SEDELVFEEPDEPFW-FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-G-VEYY 282 (414)
T ss_dssp TS-G----GG-EEEEC-TTCTTS-EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-S--EEE
T ss_pred CCCh----HhCeeEEeecCCCcE-EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-c-eEEE
Confidence 7776 32 22112222120 00122334666444432 22 56788898875 7877754211 1 1223
Q ss_pred EEEeCCeEEEEeCC---CCeEEEEeCCCCc---eeEc-cccccccCceEEEEeCCeEEEEecC--CCeEEEEecc
Q 016552 291 AAMDEEVLYGIDEN---SCTLSRYDEVMDD---WKEV-VKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVK 356 (387)
Q Consensus 291 ~~~~~~~ly~~~~~---~~~l~~yd~~~~~---W~~v-~~~~~~~~~~~~~~~~g~i~v~gg~--~~~i~~~d~~ 356 (387)
+...++.+|++... .+.|..++.+... |..+ .+......-..+...++.|++..-. ...+.++|..
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 44558899998642 4689999988765 6643 3222222234445678888887643 3688999998
No 227
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=64.82 E-value=8.5 Score=35.68 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=32.4
Q ss_pred CCCCCChHHHHHHHhhhcC-----------chhhhhhhHhhhhhhcCC
Q 016552 41 PLLPGLPDHIAHLCLSHVH-----------PSILHNVCHSWRRLIYSP 77 (387)
Q Consensus 41 ~~~~~LPddl~~~iL~rLP-----------l~~~r~VcK~W~~li~~~ 77 (387)
..|..||.+++.+|+-++. ...+..||+.|+.+..+.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 6899999999999999886 568889999999987663
No 228
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=63.78 E-value=92 Score=26.47 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=46.6
Q ss_pred CeEEEEECCCCceeecccccccCCCCcE-EE-EeCCeEEEEeC-------CCCeEEEEeCCCCceeEccccccccCceEE
Q 016552 263 AEGAVYDVVANTWDDMREGMVRGWRGPV-AA-MDEEVLYGIDE-------NSCTLSRYDEVMDDWKEVVKSDLLKGARHA 333 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~-~~-~~~~~ly~~~~-------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~ 333 (387)
..++.+|..++.|..+....-..-..|- +. +.+..|.++-| .+|.|++|++.++.=..+.....-.....-
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQVis 167 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQVIS 167 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccceeEEE
Confidence 6788899888887655321111111121 22 34444444432 246799999999877776654333322323
Q ss_pred E-EeCCeEEEEecCCCeEEEEecc
Q 016552 334 A-AGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 334 ~-~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
+ -.++.|-+ .+.+||-.
T Consensus 168 ~e~~gd~L~L------ki~vYddd 185 (200)
T PF15525_consen 168 AEKNGDNLNL------KINVYDDD 185 (200)
T ss_pred EEEeCCEEEE------EEEEEecC
Confidence 3 33444433 35666544
No 229
>PRK01742 tolB translocation protein TolB; Provisional
Probab=62.57 E-value=1.6e+02 Score=28.69 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=61.9
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..+.++|..+++ -..+...+.... .....-||+ |++..... ..++.+|+.++....+... ......+.
T Consensus 228 ~~i~i~dl~tg~----~~~l~~~~g~~~----~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~ 298 (429)
T PRK01742 228 SQLVVHDLRSGA----RKVVASFRGHNG----APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG-AGNNTEPS 298 (429)
T ss_pred cEEEEEeCCCCc----eEEEecCCCccC----ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC-CCCcCCEE
Confidence 367888988877 555554432111 122233565 44433222 3577888888776655431 11111222
Q ss_pred EEEeCCeEEEEeCCCC--eEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 291 AAMDEEVLYGIDENSC--TLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
-.-.+..|++.....+ .|+.+|..+..=..+.. . .......-+|+.+++.+. ..++.+|..++
T Consensus 299 wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~---~~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g 363 (429)
T PRK01742 299 WSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-R---GYSAQISADGKTLVMING-DNVVKQDLTSG 363 (429)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-C---CCCccCCCCCCEEEEEcC-CCEEEEECCCC
Confidence 2223344665543334 46666665553232211 1 111122335554444333 45777787654
No 230
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=62.37 E-value=84 Score=32.33 Aligned_cols=63 Identities=5% Similarity=-0.078 Sum_probs=37.7
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCC
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVM 315 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~ 315 (387)
.+|+..+.|+....|..+|..+++=-..-. ...-...++. -.+|.+++.++.+..|..||...
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 356655555555788999988764321110 0011112222 34778889988888999999754
No 231
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.06 E-value=33 Score=25.29 Aligned_cols=49 Identities=18% Similarity=0.077 Sum_probs=27.2
Q ss_pred CCeEEEEeCCCCceeEccccccccCceEEE-EeCCeEEEEec-CCCeEEEEec
Q 016552 305 SCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCE-NGGGIVVVDV 355 (387)
Q Consensus 305 ~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g~i~v~gg-~~~~i~~~d~ 355 (387)
+|+++.|||++++.+.+.. .+..+.+++ ..++.-++|.. ....|.-|-+
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 4689999999998877654 333333333 34444344433 3355554443
No 232
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=59.57 E-value=1.5e+02 Score=27.51 Aligned_cols=170 Identities=12% Similarity=-0.003 Sum_probs=82.3
Q ss_pred cEEEeccCCce-eeCCCC----CCCCcceeEEEeCCEEEEEecC---CCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552 166 PLIFDPICRTW-TFGPEL----VTPRRWCAAGCSRGAVYVASGI---GSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 166 ~~vyd~~t~~W-~~l~~~----p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p 237 (387)
++.+++.+..- +.+++. +..|.+=..+.-+|.+|+---. ...........+..||+. .. ..++..-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~----~~~l~~~~ 161 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG----VVRLLDDD 161 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC----EEEeecCc
Confidence 46667654433 554433 2344444455556777764322 011112234478888984 44 44443111
Q ss_pred CCCccccceEEEEECC-EEEEEeeeCCeEEEEECCC--------CceeecccccccCCCCcEEEEeCCeEEEEeCCCC-e
Q 016552 238 DGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVA--------NTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-T 307 (387)
Q Consensus 238 ~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~-~ 307 (387)
....+..+..-|| .+|+.....+.++.|+... +.+.... ...+..-..++-.+|.||+.....+ .
T Consensus 162 ---~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~--~~~G~PDG~~vDadG~lw~~a~~~g~~ 236 (307)
T COG3386 162 ---LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD--EEPGLPDGMAVDADGNLWVAAVWGGGR 236 (307)
T ss_pred ---EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc--CCCCCCCceEEeCCCCEEEecccCCce
Confidence 1111122334466 5777766557888887653 1121111 1112222233344678887554443 8
Q ss_pred EEEEeCCCCceeEccccccc-cCceEEEEe-CCeEEEEecC
Q 016552 308 LSRYDEVMDDWKEVVKSDLL-KGARHAAAG-GGRVCAVCEN 346 (387)
Q Consensus 308 l~~yd~~~~~W~~v~~~~~~-~~~~~~~~~-~g~i~v~gg~ 346 (387)
|.+|+++...=.+ -.+|.. ...++...- .+.|||....
T Consensus 237 v~~~~pdG~l~~~-i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 237 VVRFNPDGKLLGE-IKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEEECCCCcEEEE-EECCCCCCccceEeCCCcCEEEEEecC
Confidence 9999998443333 233422 222222222 3678887654
No 233
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=59.44 E-value=1.5e+02 Score=27.55 Aligned_cols=123 Identities=18% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE-----EEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA-----AMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~-----~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~ 326 (387)
+-+.+.+|+++..+-.|.-.. ..+....+-.+..+ +-.|++||.=...+.+|.+||+..-.= .+-.+.+
T Consensus 219 ~~~~~a~gsY~q~~giy~~~~-----~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-pv~~L~r 292 (406)
T KOG2919|consen 219 DSKTLAVGSYGQRVGIYNDDG-----RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-PVYALER 292 (406)
T ss_pred CCcceeeecccceeeeEecCC-----CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-hhhhhhh
Confidence 456778888776677775322 22211111111112 234667765444466899999854311 1112222
Q ss_pred ccC--c---eEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCceeEEEEEccCC
Q 016552 327 LKG--A---RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHIMPRM 383 (387)
Q Consensus 327 ~~~--~---~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~~~~ 383 (387)
... + ..=..-.|+++.-|+..+.|-+||.+.- ..|.- -.+.....-+|+..|-|
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~---gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL---GNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCC---CCcccccccccccccceecCccc
Confidence 222 1 1112234666666556778999999863 14663 33333455566666655
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=59.27 E-value=1.6e+02 Score=27.66 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=98.9
Q ss_pred CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc--ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552 147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR--WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224 (387)
Q Consensus 147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 224 (387)
..||++..-+. ..--..+.+|+..++-..+...+.+-. .+.++.-++++.+..-+. ...+.+|-..++
T Consensus 52 ~~LY~v~~~~~---~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-------~g~v~v~p~~~d 121 (346)
T COG2706 52 RHLYVVNEPGE---EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-------SGSVSVYPLQAD 121 (346)
T ss_pred CEEEEEEecCC---cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-------CceEEEEEcccC
Confidence 36888765322 111234667887788877654443332 333333344333322222 236666766554
Q ss_pred ccccCeEEcC------CCCCCC-ccccceEE-EEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcE-EEEe
Q 016552 225 EKNSRWEKTG------ELKDGR-FSREAIDA-VGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPV-AAMD 294 (387)
Q Consensus 225 ~~~~~W~~~~------~~p~~~-~~~~~~~~-~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~-~~~~ 294 (387)
-.. |..+. +-|.++ ...+.|.+ ..-++++.++-.-+ +.+..||.+.+.-+.........-.++. ++++
T Consensus 122 G~l--~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 122 GSL--QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred Ccc--ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc
Confidence 311 43322 112222 11112322 23356443333222 6899999997776655432222223332 3333
Q ss_pred --CCeEEEEeCCCCe--EEEEeCCCCceeEcccc---cc-ccC---ceEEE-EeCCe-EEEEecCCCeEEEEeccCC
Q 016552 295 --EEVLYGIDENSCT--LSRYDEVMDDWKEVVKS---DL-LKG---ARHAA-AGGGR-VCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 --~~~ly~~~~~~~~--l~~yd~~~~~W~~v~~~---~~-~~~---~~~~~-~~~g~-i~v~gg~~~~i~~~d~~~~ 358 (387)
+...|++.+-+++ ++.||....+.++++.. |. ..+ .+.+. ..+|+ ||+--.+-+.|.+|.++..
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 3457888765555 55677777888887743 31 222 22222 33555 5555445577888877744
No 235
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.99 E-value=1.5e+02 Score=30.23 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=67.8
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeecc------cc-cccCC--CCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMR------EG-MVRGW--RGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKE 320 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~------~~-~~~~~--~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~ 320 (387)
-++.+++-||-+..|..+|..+..=+.+. .. .+.+- ...+.++. .+.+++-|+..+.|..||+.+. .+
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~k 205 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--KK 205 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc--cc
Confidence 36778888888888999998866322221 10 11111 12234433 2346666666778999999887 34
Q ss_pred ccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC--------CCCCceEEeCCCCce
Q 016552 321 VVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA--------AAPTIFVVDTPLGFE 373 (387)
Q Consensus 321 v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~--------~~~~~W~~~~p~~~~ 373 (387)
+-.+...+.+.. ++.-+|.-++-++....|-++|+.+. .....|...+-+.|.
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 444434444333 33345666666566666777777643 222366664444443
No 236
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.51 E-value=2.1e+02 Score=28.78 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=53.4
Q ss_pred eEEEEECCCCceeecccc-cccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEE
Q 016552 264 EGAVYDVVANTWDDMREG-MVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVC 341 (387)
Q Consensus 264 ~i~~yD~~~~~W~~~~~~-~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~ 341 (387)
+..+|+...++-+.+... .+......+.+ -.+...+++|..+|.|..||..++.=..... .....+..--.+|.++
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka--~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA--EFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee--cccceEEEEcCCCcEE
Confidence 345677666654444310 11111111112 2345678888889999999987763222111 1122232333478899
Q ss_pred EEecCCCeEEEEeccCC
Q 016552 342 AVCENGGGIVVVDVKAA 358 (387)
Q Consensus 342 v~gg~~~~i~~~d~~~~ 358 (387)
++|+..+.+.+||+.-.
T Consensus 315 ~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCceEEEEEeecC
Confidence 99888899999999854
No 237
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=58.29 E-value=1.4e+02 Score=26.67 Aligned_cols=189 Identities=19% Similarity=0.178 Sum_probs=104.4
Q ss_pred cEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccc
Q 016552 166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA 245 (387)
Q Consensus 166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~ 245 (387)
+.......++|.+=|-.. ++++|+..+... ..+..|...++-...+|...-.+|.+...
T Consensus 12 ~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~~-------~~l~E~~~~~~~~~~~~~~~~~lp~~~~g--- 70 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFDG-------LMLTEYTNLEDFKRGRKAEKYRLPYSWDG--- 70 (249)
T ss_pred EEeeccccceeecCCCcc-----------cCceEEeccccC-------ceEEEeccHHHhhccCcceEEeCCCCccc---
Confidence 344555668888743211 567888833322 24444544333322337766667755432
Q ss_pred eEEEEECCEEEEEeeeCCeEEEEECCCC---ceeeccccc-----ccCCCCc---EEEEeCCeEEEEeC---CCCeE--E
Q 016552 246 IDAVGWKGKLCLVNVKGAEGAVYDVVAN---TWDDMREGM-----VRGWRGP---VAAMDEEVLYGIDE---NSCTL--S 309 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~---~W~~~~~~~-----~~~~~~~---~~~~~~~~ly~~~~---~~~~l--~ 309 (387)
..-++++|.+|.-......+..||+++. .|..++... +-.|.+. -.++..+-|+++-. +.+.+ .
T Consensus 71 Tg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~s 150 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLS 150 (249)
T ss_pred cceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEee
Confidence 5578999999988777778999999985 466665321 1122221 23344445777643 23333 4
Q ss_pred EEeCCC----CceeEccccccccCceEEEEeCCeEEEEecC---CCeE-EEEeccCCCCCCceE---EeCCCCc-eeEEE
Q 016552 310 RYDEVM----DDWKEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGI-VVVDVKAAAAPTIFV---VDTPLGF-EALSV 377 (387)
Q Consensus 310 ~yd~~~----~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i-~~~d~~~~~~~~~W~---~~~p~~~-~~~~~ 377 (387)
..|+++ .+|..-. +.+....+..+.|-+|++-.. ...| +.||..++ +=. ++.+..+ -+..+
T Consensus 151 kLdp~tl~~e~tW~T~~---~k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~----~~~~~~ipf~N~y~~~~~i 223 (249)
T KOG3545|consen 151 KLDPETLEVERTWNTTL---PKRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTG----TQERIDLPFPNPYSYATMI 223 (249)
T ss_pred ccCHHHhheeeeecccc---CCCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCC----ceecccccccchhhhhhcc
Confidence 566643 3453321 122334456666889998653 2334 68899866 222 1222222 35566
Q ss_pred EEccC
Q 016552 378 HIMPR 382 (387)
Q Consensus 378 ~~~~~ 382 (387)
+|+|+
T Consensus 224 dYNP~ 228 (249)
T KOG3545|consen 224 DYNPR 228 (249)
T ss_pred CCCcc
Confidence 77775
No 238
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.59 E-value=2.9e+02 Score=30.16 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=60.2
Q ss_pred eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC-eEEEEeCCCCceeEcccc
Q 016552 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-TLSRYDEVMDDWKEVVKS 324 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~-~l~~yd~~~~~W~~v~~~ 324 (387)
++.+-+.|+ +..|.++.+.+||+..++--.....-........+.....++++-+...+ ..++|+++.+.-..+...
T Consensus 939 ~Ai~~f~~~--~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 939 GAICPFQGR--VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred eEEeccCCE--EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 444555664 44456678999999877543322211111122344455667776654333 477899999999888887
Q ss_pred ccccCceEEEEeCCeEEEEecCCCeEEEE
Q 016552 325 DLLKGARHAAAGGGRVCAVCENGGGIVVV 353 (387)
Q Consensus 325 ~~~~~~~~~~~~~g~i~v~gg~~~~i~~~ 353 (387)
+-.|.-.++..++..-+..+..-++++++
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEE
Confidence 77666555555543333333333444444
No 239
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.50 E-value=2.3e+02 Score=28.99 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=56.9
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCcc--ccCeE--EcCCCCC-CCccccceEEEE-ECCEEEEEeeeCCeEEE
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK--NSRWE--KTGELKD-GRFSREAIDAVG-WKGKLCLVNVKGAEGAV 267 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~--~~~W~--~~~~~p~-~~~~~~~~~~~~-~~g~lyv~gg~~~~i~~ 267 (387)
-++.+++.||.+. .+.+||..+... ..+.. ...+++. ++.+ -.+.+. -.|.+++-||....+..
T Consensus 128 k~~~lvaSgGLD~--------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s--iYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 128 KNNELVASGGLDR--------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDS--IYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred cCceeEEecCCCc--------cEEEEEccCcchhhhhhccccccccCCCCCccc--eeeeecCCcceEEEecCcccceEE
Confidence 3667888888865 677777776631 00011 1223331 2111 011222 23457777777789999
Q ss_pred EECCCCcee-ecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 268 YDVVANTWD-DMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 268 yD~~~~~W~-~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
||+.+++=. ++.. .... .-.+. ..+|.=.+-++.+|.|..||....
T Consensus 198 wDprt~~kimkLrG-HTdN--Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRG-HTDN--VRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred eccccccceeeeec-cccc--eEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 999987522 2211 1111 11122 234444455556788888887554
No 240
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=56.93 E-value=10 Score=36.29 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCC
Q 016552 41 PLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP 80 (387)
Q Consensus 41 ~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~ 80 (387)
.+.-.||.|++.++++.|. +.+++.+|+-|+-+..+..=+
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~ 112 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCW 112 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccc
Confidence 3444699999999999999 999999999999999886543
No 241
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=56.59 E-value=1.6e+02 Score=26.94 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=37.6
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCcc-ccceEEEEEC--------CEEEEEeeeCCeEEEEECCCC-ceeeccc
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFS-REAIDAVGWK--------GKLCLVNVKGAEGAVYDVVAN-TWDDMRE 280 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~-~~~~~~~~~~--------g~lyv~gg~~~~i~~yD~~~~-~W~~~~~ 280 (387)
..+.+||+.+++ =...-.+|..... .......++| +.+|+.......+.+||..++ .|+....
T Consensus 34 pKLv~~Dl~t~~----li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQ----LIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTC----EEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCc----EEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 578899999998 5544445543322 1122333333 357877655578999999997 5665543
No 242
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=56.58 E-value=1.6e+02 Score=27.01 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=30.8
Q ss_pred CeEEEEeCCCCeEEEEeCCCCceeEccccccccC--ceEEEEeCCeEEEEe-cCCCeEEEEeccCC
Q 016552 296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG--ARHAAAGGGRVCAVC-ENGGGIVVVDVKAA 358 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~--~~~~~~~~g~i~v~g-g~~~~i~~~d~~~~ 358 (387)
+.||.. +.+.++..||.++++=..--. .... +.....-.|..+|.. .....+-+||+.++
T Consensus 103 s~i~S~-gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 103 SHILSC-GTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred CEEEEe-cCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 344444 456789999999884332111 1110 111111123333433 34677888998855
No 243
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=55.89 E-value=2.2e+02 Score=28.29 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=65.4
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccc-CC----CCcEEEE-eCCeEEEEeCCCCeEEEEeCCCC-----ceeE
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVR-GW----RGPVAAM-DEEVLYGIDENSCTLSRYDEVMD-----DWKE 320 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~-~~----~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~-----~W~~ 320 (387)
+|+++..|-.+.+|+..|. +.|..-+..... .. ...++++ .+|+..+--+.++.|.+||+.+- .|+.
T Consensus 328 dg~~iAagc~DGSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CcchhhhcccCCceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 5666433323367888775 445443321111 11 1223332 34554444445678999998652 3433
Q ss_pred ccccccccCceEEEEeCCeEEEEecC------CCeEEEEeccCCCCCCceEEeCCCCceeEEEEEccCCC
Q 016552 321 VVKSDLLKGARHAAAGGGRVCAVCEN------GGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMS 384 (387)
Q Consensus 321 v~~~~~~~~~~~~~~~~g~i~v~gg~------~~~i~~~d~~~~~~~~~W~~~~p~~~~~~~~~~~~~~~ 384 (387)
+.. +....-|+..-+++|++.|-. ...+++||.-+-. ..-++..+ +-..+.+...|++.
T Consensus 406 L~t--~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--~v~ki~i~-~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 406 LPT--PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--TVYKIDIS-TASVVRCLWHPKLN 470 (641)
T ss_pred CCc--cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--eEEEecCC-CceEEEEeecchhh
Confidence 322 344556788889999999752 2457888877430 00112222 33555555555553
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.83 E-value=1.9e+02 Score=27.57 Aligned_cols=133 Identities=19% Similarity=0.070 Sum_probs=65.1
Q ss_pred CccEEEeccCCcee-eCCCCCCCCcceeEE--Ee-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552 164 TRPLIFDPICRTWT-FGPELVTPRRWCAAG--CS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239 (387)
Q Consensus 164 ~~~~vyd~~t~~W~-~l~~~p~~r~~~~~~--~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~ 239 (387)
..+.+.|..|++-. +++.. ...|... .- +..+||++. + ..+-++|+.+.+ =. ...+.+
T Consensus 16 ~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d--------g~vsviD~~~~~----~v--~~i~~G 77 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D--------GTVSVIDLATGK----VV--ATIKVG 77 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T--------SEEEEEETTSSS----EE--EEEE-S
T ss_pred CEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C--------CeEEEEECCccc----EE--EEEecC
Confidence 46788888876533 33221 1112222 22 346899852 2 268899999887 22 222222
Q ss_pred CccccceEEEEECCE-EEEEeeeCCeEEEEECCCCce-eecccc-ccc-CC--CCcEE-EEeCCeEEEEeC-CCCeEEEE
Q 016552 240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANTW-DDMREG-MVR-GW--RGPVA-AMDEEVLYGIDE-NSCTLSRY 311 (387)
Q Consensus 240 ~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~W-~~~~~~-~~~-~~--~~~~~-~~~~~~ly~~~~-~~~~l~~y 311 (387)
..+ ...++.-||+ +|+.+...+.+.++|.++.+= ..++.. .+. .. +..++ +..++..|++.- +.++++..
T Consensus 78 ~~~--~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 78 GNP--RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp SEE--EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CCc--ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 221 1223445776 444445558999999887642 233211 111 11 11122 234556677653 46789988
Q ss_pred eCCCC
Q 016552 312 DEVMD 316 (387)
Q Consensus 312 d~~~~ 316 (387)
|....
T Consensus 156 dy~d~ 160 (369)
T PF02239_consen 156 DYSDP 160 (369)
T ss_dssp ETTTS
T ss_pred Eeccc
Confidence 86654
No 245
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=55.83 E-value=1.5e+02 Score=27.53 Aligned_cols=144 Identities=13% Similarity=0.238 Sum_probs=73.4
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE---ECCEEEEEeeeCCeEEEEEC-CCCceeecccccccCCCCc
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG---WKGKLCLVNVKGAEGAVYDV-VANTWDDMREGMVRGWRGP 289 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~---~~g~lyv~gg~~~~i~~yD~-~~~~W~~~~~~~~~~~~~~ 289 (387)
+.+++|....+. -|+....+..--.. ..++- ..++|. .++.++..+++.. ..++|......+...+...
T Consensus 32 ~evhiy~~~~~~---~w~~~htls~Hd~~---vtgvdWap~snrIv-tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt 104 (361)
T KOG1523|consen 32 HEVHIYSMLGAD---LWEPAHTLSEHDKI---VTGVDWAPKSNRIV-TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAAT 104 (361)
T ss_pred ceEEEEEecCCC---CceeceehhhhCcc---eeEEeecCCCCcee-EccCCCCccccccCCCCeeccceeEEEecccee
Confidence 477888765444 17766644322111 11111 123443 3334445667766 7778987654333322111
Q ss_pred EEE-EeCCeEEEEeCCCC--eEEEEeCCCCceeEccccccccCc------------eEEEEeCCeEEEEecCCCeEEEEe
Q 016552 290 VAA-MDEEVLYGIDENSC--TLSRYDEVMDDWKEVVKSDLLKGA------------RHAAAGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 290 ~~~-~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~~~~------------~~~~~~~g~i~v~gg~~~~i~~~d 354 (387)
.+- .-.+..|.+|+... .+.-|.-|.+-|.....-.+.+.. .++...|++..|| ..++-+
T Consensus 105 ~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf-----SayIK~ 179 (361)
T KOG1523|consen 105 CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF-----SAYIKG 179 (361)
T ss_pred eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEE-----EEeeec
Confidence 111 12445677765333 355577778877654433333332 2222334444444 456667
Q ss_pred ccCCCCCCceEEeCC
Q 016552 355 VKAAAAPTIFVVDTP 369 (387)
Q Consensus 355 ~~~~~~~~~W~~~~p 369 (387)
++.++++.-|.-.||
T Consensus 180 Vdekpap~pWgsk~P 194 (361)
T KOG1523|consen 180 VDEKPAPTPWGSKMP 194 (361)
T ss_pred cccCCCCCCCccCCc
Confidence 777777777876666
No 246
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.08 E-value=3.2e+02 Score=29.95 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=64.6
Q ss_pred CCEEEEEeeeCCeEEEEECCCCce-eecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC-------CceeEccc
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVM-------DDWKEVVK 323 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~-------~~W~~v~~ 323 (387)
.|.+|+.|+ ...|.+.|....+= ..++.......+.-++-..+|.+++.|-.+|.+..||... ..|++-..
T Consensus 1177 ~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1177 SGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred CCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 588887765 45788899887643 2232211111111122234567888888899999999643 23444333
Q ss_pred cccccCceEEEEeCCeEEEEe-cCCCeEEEEeccCCCCCCceEEeCCC--C--ceeEEEEEcc
Q 016552 324 SDLLKGARHAAAGGGRVCAVC-ENGGGIVVVDVKAAAAPTIFVVDTPL--G--FEALSVHIMP 381 (387)
Q Consensus 324 ~~~~~~~~~~~~~~g~i~v~g-g~~~~i~~~d~~~~~~~~~W~~~~p~--~--~~~~~~~~~~ 381 (387)
.++.. +.-..-+|.--+|. ..+++|.++|+...+...--.+..+- | ..++.+|.-.
T Consensus 1256 ~~~Iv--~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1256 VEPIV--HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA 1316 (1387)
T ss_pred cccce--eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC
Confidence 22211 11122223332333 34677888888753222222222221 2 5666666543
No 247
>PF13013 F-box-like_2: F-box-like domain
Probab=54.90 E-value=20 Score=27.58 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHhhhcC
Q 016552 43 LPGLPDHIAHLCLSHVH 59 (387)
Q Consensus 43 ~~~LPddl~~~iL~rLP 59 (387)
+..||+||++.|+-.-.
T Consensus 22 l~DLP~ELl~~I~~~C~ 38 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN 38 (109)
T ss_pred hhhChHHHHHHHHhhcC
Confidence 78899999999998766
No 248
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=52.44 E-value=39 Score=18.93 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=16.0
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
..++.+|+.. .++.++++|.+++
T Consensus 4 ~~~~~v~~~~-~~g~l~a~d~~~G 26 (33)
T smart00564 4 LSDGTVYVGS-TDGTLYALDAKTG 26 (33)
T ss_pred EECCEEEEEc-CCCEEEEEEcccC
Confidence 4456666643 4688999998776
No 249
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=52.10 E-value=1.6e+02 Score=25.74 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=57.9
Q ss_pred CEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc-
Q 016552 253 GKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK- 328 (387)
Q Consensus 253 g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~- 328 (387)
+.|...+|.+ ..|+.-|-.+++= .. ...+..++-.+ ..+|-+|+-|..+..|..||..-+.-..+-...+..
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~--~~--a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQG--FH--ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCc--ce--eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence 3455555544 3444444333321 00 12233344333 346677777666678899998777655443322211
Q ss_pred ----CceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552 329 ----GARHAAAG--GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 329 ----~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.+.+.+++ .|++++.|.......+||+..+
T Consensus 228 glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 228 GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred CcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 23334444 5899999878888999999865
No 250
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=52.01 E-value=2.5e+02 Score=27.87 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=82.9
Q ss_pred CCCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc--c--eEEEEECCEEE
Q 016552 183 VTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE--A--IDAVGWKGKLC 256 (387)
Q Consensus 183 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~--~--~~~~~~~g~ly 256 (387)
...|...+.|.+ ++++ +++|+.+ .+|.++|. .. |..-+.+....+... . +.+..++|++.
T Consensus 314 ~g~Rv~~tsC~~nrdg~~-iAagc~D-------GSIQ~W~~--~~----~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL-IAAGCLD-------GSIQIWDK--GS----RTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CCcccCceeeecCCCcch-hhhcccC-------Cceeeeec--CC----cccccceEeeeccCCCCceeEEEeccccchh
Confidence 345655556655 4566 5555544 15666654 33 554444332211111 1 23345678766
Q ss_pred EEeeeCCeEEEEECCC-----CceeecccccccCCCCcEEEEeCCeEEEEeCC------CCeEEEEeCCCCceeEccccc
Q 016552 257 LVNVKGAEGAVYDVVA-----NTWDDMREGMVRGWRGPVAAMDEEVLYGIDEN------SCTLSRYDEVMDDWKEVVKSD 325 (387)
Q Consensus 257 v~gg~~~~i~~yD~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~------~~~l~~yd~~~~~W~~v~~~~ 325 (387)
+--|.+..+-+.|+.. ..|+-++...+.. .++..-+.+|.+.|.. .+.|+.||..+ ...+....
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t---dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t--~d~v~ki~ 454 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT---DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT--LDTVYKID 454 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCC---ccccCCCceEEEecccccCCCCCceEEEEeccc--eeeEEEec
Confidence 6666666777777753 2455444322211 2222346677776642 35689998754 34444443
Q ss_pred cccCceEEEEeC---CeEEEEecCCCeEEEEeccCCCCC
Q 016552 326 LLKGARHAAAGG---GRVCAVCENGGGIVVVDVKAAAAP 361 (387)
Q Consensus 326 ~~~~~~~~~~~~---g~i~v~gg~~~~i~~~d~~~~~~~ 361 (387)
.......-+... ++|++-.|+|.-=+.||++....|
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RG 493 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRG 493 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCceEEEECccccccc
Confidence 332222222333 567766666666677899876444
No 251
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=50.83 E-value=2.1e+02 Score=26.63 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=45.9
Q ss_pred ceEEEEECCCCccccCeEEcC--CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
+.-.+.|..+++ =. +. .|| ++--.++|+||+.......+..+|+++++.+.+... + +. ..+.
T Consensus 185 ~gG~vidv~s~e----vl-~~GLsmP--------hSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~v-p-G~-~rGL 248 (335)
T TIGR03032 185 DGGCVIDIPSGE----VV-ASGLSMP--------HSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFL-P-GF-TRGL 248 (335)
T ss_pred CCeEEEEeCCCC----EE-EcCccCC--------cCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEEC-C-CC-Cccc
Confidence 344567888887 22 22 344 223356999999987777899999999999988642 2 11 1234
Q ss_pred EEeCCeEEEEe
Q 016552 292 AMDEEVLYGID 302 (387)
Q Consensus 292 ~~~~~~ly~~~ 302 (387)
+..| .+.+++
T Consensus 249 ~f~G-~llvVg 258 (335)
T TIGR03032 249 AFAG-DFAFVG 258 (335)
T ss_pred ceeC-CEEEEE
Confidence 4454 555555
No 252
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=50.73 E-value=63 Score=32.64 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=56.1
Q ss_pred EEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEE-----eCCeEEEEeC-CCCeEEEEeCCCCceeEcccccc
Q 016552 254 KLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAM-----DEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~-----~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~ 326 (387)
.||+.... ..+-.||.+....+ +-.. + ..+..+--|+ .-|+..++.. .+.++..||.++..-......-.
T Consensus 66 iLavadE~-G~i~l~dt~~~~fr~ee~~-l-k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 66 ILAVADED-GGIILFDTKSIVFRLEERQ-L-KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred eEEEecCC-Cceeeecchhhhcchhhhh-h-cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 35554433 47888888877665 1111 1 1111111111 1133333332 24479999999886555432211
Q ss_pred ---ccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 327 ---LKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 327 ---~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.....|....+-.+|+.||.++.+.++|+.-+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 12234455567778889888999999998743
No 253
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=49.80 E-value=4.1e+02 Score=29.63 Aligned_cols=84 Identities=8% Similarity=0.003 Sum_probs=46.5
Q ss_pred EEEEeCCCCeEEEEeCCC--CceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEeCCCCceeE
Q 016552 298 LYGIDENSCTLSRYDEVM--DDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEAL 375 (387)
Q Consensus 298 ly~~~~~~~~l~~yd~~~--~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~~p~~~~~~ 375 (387)
+.++.-..+.+..||+.. +.|+.-..+..-.-...++--.+..+++|-..+.+.+||+.=+-.-..|+.+....-+-+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence 444443456788899865 467654332221112223334567888877778899999873322246775333333444
Q ss_pred EEEEcc
Q 016552 376 SVHIMP 381 (387)
Q Consensus 376 ~~~~~~ 381 (387)
+++..+
T Consensus 1245 ~~~~~~ 1250 (1431)
T KOG1240|consen 1245 WLCPTY 1250 (1431)
T ss_pred EeeccC
Confidence 444443
No 254
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=48.70 E-value=2.5e+02 Score=26.75 Aligned_cols=131 Identities=8% Similarity=0.063 Sum_probs=65.7
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-E
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-V 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~ 290 (387)
.++.++|+++.. =.. .........++.+ ..++.+.|+.+..+..|||.++.=+.+.. ...+..+- +
T Consensus 281 HTIk~WDletg~----~~~------~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-s~~gH~nwVs 349 (423)
T KOG0313|consen 281 HTIKVWDLETGG----LKS------TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-SLIGHKNWVS 349 (423)
T ss_pred ceEEEEEeeccc----cee------eeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE-eeecchhhhh
Confidence 367777777776 111 1111111223333 33466666666889999999885433332 11111110 1
Q ss_pred EE---EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecCCCeEEEEecc
Q 016552 291 AA---MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCENGGGIVVVDVK 356 (387)
Q Consensus 291 ~~---~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~~~~i~~~d~~ 356 (387)
++ -.+..+++-+..++.+.+||..+- |..+-..-..-....++-.... +++-||....+.++.-.
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccC-CCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 11 224466676667888999997543 2222221112223334444444 44455556677776544
No 255
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.50 E-value=2.3e+02 Score=26.28 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=50.2
Q ss_pred eEEEEEC--CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCC-EEEEEecCCCCCCCCCcc
Q 016552 140 VQLVSLS--GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRG-AVYVASGIGSQFSSDVAK 214 (387)
Q Consensus 140 ~~~~~~~--~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~ 214 (387)
|.++..- ..+++|+-. +=..+.+||+.+.+-...-..+..|+++..++ .+| .+|..-.... ....
T Consensus 8 H~~a~~p~~~~avafaRR------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~----~g~G 77 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARR------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE----TGRG 77 (305)
T ss_pred cceeeCCCCCeEEEEEeC------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC----CCcE
Confidence 5555543 456666543 22467999999987654334467776544444 344 6777643221 2345
Q ss_pred eEEEEECCCCccccCeEEcCCCCC
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKD 238 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~ 238 (387)
.|-+||.. +. ...+...+.
T Consensus 78 ~IgVyd~~-~~----~~ri~E~~s 96 (305)
T PF07433_consen 78 VIGVYDAA-RG----YRRIGEFPS 96 (305)
T ss_pred EEEEEECc-CC----cEEEeEecC
Confidence 78899998 45 676665554
No 256
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=47.09 E-value=1.8e+02 Score=24.72 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=48.9
Q ss_pred CEEEEEeee-CCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeC---CCCeEEEEeCCCCceeEccccccc
Q 016552 253 GKLCLVNVK-GAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDE---NSCTLSRYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 253 g~lyv~gg~-~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~---~~~~l~~yd~~~~~W~~v~~~~~~ 327 (387)
.++.++.|. ...+..||.+...=..+. .... ..+. .-+|++.++++ ..|.|..||.+ +.+.+......
T Consensus 72 ~~favi~g~~~~~v~lyd~~~~~i~~~~----~~~~-n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~ 144 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVKGKKIFSFG----TQPR-NTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHS 144 (194)
T ss_pred CEEEEEEccCCcccEEEcCcccEeEeec----CCCc-eEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeeccccC
Confidence 345555443 357888998632222222 1111 1222 22556666654 24789999998 44555544333
Q ss_pred cCceEEEEeCCeEEEEecC------CCeEEEEecc
Q 016552 328 KGARHAAAGGGRVCAVCEN------GGGIVVVDVK 356 (387)
Q Consensus 328 ~~~~~~~~~~g~i~v~gg~------~~~i~~~d~~ 356 (387)
......-.-+|+-++.... .+.+.+|+..
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3233333456776666432 3445555554
No 257
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=46.51 E-value=2.8e+02 Score=26.78 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=60.7
Q ss_pred EEEEEeeeCCeEEEEECCCCceeecccccccCCCCc--EEE--EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccC
Q 016552 254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP--VAA--MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG 329 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~--~~~--~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~ 329 (387)
.+|..-+.+..+.+.|..+ |...+.....+..+. ++. -.++.|+..++.+++|..||+..-.= .+-.++....
T Consensus 241 ~lF~sv~dd~~L~iwD~R~--~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~d 317 (422)
T KOG0264|consen 241 DLFGSVGDDGKLMIWDTRS--NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHED 317 (422)
T ss_pred hhheeecCCCeEEEEEcCC--CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCc
Confidence 3454445556778888876 433322122222222 222 23566777777788999999855321 2222222333
Q ss_pred ceEEE---EeCCeEEEEecCCCeEEEEeccCCCCCCceE
Q 016552 330 ARHAA---AGGGRVCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 330 ~~~~~---~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~ 365 (387)
....+ -....|+..+|....+.++|.++-++.+.|+
T Consensus 318 ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 318 EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 32233 3445677777777889999999665555555
No 258
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=46.02 E-value=2.4e+02 Score=25.82 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=57.5
Q ss_pred EEEeeeCCeEEEEECCCCceeecccccccCCCCcE----EEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccC-c
Q 016552 256 CLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV----AAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG-A 330 (387)
Q Consensus 256 yv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~----~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~-~ 330 (387)
++.++.+ ....-+..-+.|+.+......+++... +-...+.+|+.|. +|.+.+--....+|.+...-+.... -
T Consensus 229 la~g~qg-~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~-gGnvl~StdgG~t~skd~g~~er~s~l 306 (339)
T COG4447 229 LARGGQG-DQFSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGI-GGNVLASTDGGTTWSKDGGVEERVSNL 306 (339)
T ss_pred EEEcccc-ceeecCCCcccccccccchhcccCCCccccccccCCCCeEEecc-CccEEEecCCCeeEeccCChhhhhhhh
Confidence 3444433 344455567789988753333332221 1234567888775 6677776667788997765544333 3
Q ss_pred eEEEEe-CCeEEEEecCCCeEEEEeccC
Q 016552 331 RHAAAG-GGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 331 ~~~~~~-~g~i~v~gg~~~~i~~~d~~~ 357 (387)
+.++.. .++.+++ |.+.-+..|++..
T Consensus 307 ~~V~~ts~~~~~l~-Gq~Gvll~~n~~a 333 (339)
T COG4447 307 YSVVFTSPKAGFLC-GQKGVLLKYNPGA 333 (339)
T ss_pred heEEeccCCceEEE-cCCceEEEecCcc
Confidence 444444 4667777 6566677777664
No 259
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=45.83 E-value=4e+02 Score=28.43 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceeEccccc--cccCceEEEEe--CCeEEEEecCCCeEEEEecc
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSD--LLKGARHAAAG--GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~--~~~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~ 356 (387)
+|++.+.. ..+.|.+|+.+ .|.....+. .....+..... .|+-+..+.-++.|.+||..
T Consensus 200 ~g~la~~~-~d~~Vkvy~r~--~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 200 GGTLAVPP-VDNTVKVYSRK--GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred CCeEEeec-cCCeEEEEccC--CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 46665554 35788999874 566655442 22222444433 35544454557889999988
No 260
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.79 E-value=2.5e+02 Score=26.00 Aligned_cols=227 Identities=15% Similarity=0.083 Sum_probs=112.7
Q ss_pred CCeEEEEEeCCCCCee-cCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCce
Q 016552 98 TPIHLFTFDPVSSTWD-PLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW 176 (387)
Q Consensus 98 ~~~~~~~~d~~~~~W~-~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W 176 (387)
+..-..+||+.+++=. .+.+.+. . . =+||.+...+|.++..--.+. ....-.+-|||.. +..
T Consensus 26 PG~~~~v~D~~~g~~~~~~~a~~g---R-------H----FyGHg~fs~dG~~LytTEnd~--~~g~G~IgVyd~~-~~~ 88 (305)
T PF07433_consen 26 PGTFALVFDCRTGQLLQRLWAPPG---R-------H----FYGHGVFSPDGRLLYTTENDY--ETGRGVIGVYDAA-RGY 88 (305)
T ss_pred CCcEEEEEEcCCCceeeEEcCCCC---C-------E----EecCEEEcCCCCEEEEecccc--CCCcEEEEEEECc-CCc
Confidence 4445778999886533 3333222 1 1 246787777766444321111 2223457899998 677
Q ss_pred eeCCCCCCCC-cceeEE-EeCC-EEEEE-ecCCCCC-------CCCCcc-eEEEEECCCCccccCeEEcCCCCCCC--cc
Q 016552 177 TFGPELVTPR-RWCAAG-CSRG-AVYVA-SGIGSQF-------SSDVAK-SVEKWDLMNGEKNSRWEKTGELKDGR--FS 242 (387)
Q Consensus 177 ~~l~~~p~~r-~~~~~~-~~~~-~iyv~-GG~~~~~-------~~~~~~-~v~~yd~~~~~~~~~W~~~~~~p~~~--~~ 242 (387)
+++...+..- .-|-.. .-++ .|.|+ ||...+. +...+. ++-..|..+++ -.+.-.+|... -+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~----ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA----LLEQVELPPDLHQLS 164 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc----eeeeeecCccccccc
Confidence 7777666432 222222 2244 55555 4543321 111222 34445788877 44333343321 11
Q ss_pred ccceEEEEECCEEEEEeeeC-------Ce---------EEEEECCCCceeecccccccCCCCcEEEEe-CCe-EEEEeCC
Q 016552 243 REAIDAVGWKGKLCLVNVKG-------AE---------GAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEV-LYGIDEN 304 (387)
Q Consensus 243 ~~~~~~~~~~g~lyv~gg~~-------~~---------i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~-ly~~~~~ 304 (387)
-. |-++.-+|.+.+-.-+. .- +..++.....|..+. .+..++++. ++. +.+-...
T Consensus 165 iR-HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~------~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 165 IR-HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLN------GYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ee-eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhC------CceEEEEEeCCCCEEEEECCC
Confidence 11 44455566665443222 11 222222233333222 123455554 333 4444445
Q ss_pred CCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 305 SCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 305 ~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
.+.+..||.+++.|.....++. .++++..++. |++..+.+.++..+..
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~D---~cGva~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLPD---ACGVAPTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred CCEEEEEECCCCCEeeccccCc---eeeeeecCCc-eEEeCCCccEEEccCc
Confidence 6789999999999988666544 3445555555 5555544445554444
No 261
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=45.52 E-value=2.6e+02 Score=28.06 Aligned_cols=92 Identities=7% Similarity=0.045 Sum_probs=52.1
Q ss_pred ceEEEEECCCCccccCeEEcC--CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
-+..+|+...++ -..+. ..|-+-.. .+++...+....++|-.+.++..||..++.=......+ .+..
T Consensus 236 ~d~ciYE~~r~k----lqrvsvtsipL~s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~-----~P~~ 304 (545)
T PF11768_consen 236 ADSCIYECSRNK----LQRVSVTSIPLPSQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEF-----IPTL 304 (545)
T ss_pred eEEEEEEeecCc----eeEEEEEEEecCCcc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecc-----cceE
Confidence 355678887776 55443 22221100 02222234445566666679999999877422222111 1222
Q ss_pred EE--eCCeEEEEeCCCCeEEEEeCCCC
Q 016552 292 AM--DEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 292 ~~--~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
+. .+|.+++++++.|.+.+||..-+
T Consensus 305 iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 305 IAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 32 36788899888899999997654
No 262
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.63 E-value=3e+02 Score=26.66 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=47.4
Q ss_pred CeEEEEECCCC---ceeecccccccCCCCcEEEEeCC--eEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe-
Q 016552 263 AEGAVYDVVAN---TWDDMREGMVRGWRGPVAAMDEE--VLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG- 336 (387)
Q Consensus 263 ~~i~~yD~~~~---~W~~~~~~~~~~~~~~~~~~~~~--~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~- 336 (387)
..+.-||.... .|+..+..-+ ..++.+... .+...++..+.+..|+...+.=..+.......+..++++.
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~----ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDE----ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCC----cceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 34555666544 6876664221 122333222 2344444556677777655433222221111112223332
Q ss_pred --CCeEEEEecCCCeEEEEeccCC
Q 016552 337 --GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 337 --~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
...++.+||....+.++|+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 3468888887778899999865
No 263
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=44.07 E-value=2.3e+02 Score=26.94 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccccccC----CCCcEEEEeCCeEEEEeC-----------------CCCeEEE
Q 016552 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRG----WRGPVAAMDEEVLYGIDE-----------------NSCTLSR 310 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~----~~~~~~~~~~~~ly~~~~-----------------~~~~l~~ 310 (387)
+|.+|+...+- .++.-+++.+.=+.+.. ...+ ..+.-.+..+|.+|+.+. .+|++..
T Consensus 126 ggdL~VaDAYl-GL~~V~p~g~~a~~l~~-~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~ 203 (376)
T KOG1520|consen 126 GGDLYVADAYL-GLLKVGPEGGLAELLAD-EAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFR 203 (376)
T ss_pred CCeEEEEecce-eeEEECCCCCcceeccc-cccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEE
Confidence 55899988764 57888888877333332 1222 122222233566666542 3578999
Q ss_pred EeCCCCceeEc
Q 016552 311 YDEVMDDWKEV 321 (387)
Q Consensus 311 yd~~~~~W~~v 321 (387)
||+.++.=+.+
T Consensus 204 YD~~tK~~~VL 214 (376)
T KOG1520|consen 204 YDPSTKVTKVL 214 (376)
T ss_pred ecCcccchhhh
Confidence 99999865443
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=43.89 E-value=3.2e+02 Score=26.64 Aligned_cols=185 Identities=10% Similarity=-0.035 Sum_probs=83.6
Q ss_pred CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~ 243 (387)
..+|+.|..+++-+++..++......+....+.+|........ ..--.+..||..++... .=..+..-....
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g----~~di~~~~~~~~~g~~g-~~~~lt~~~~~~--- 282 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG----NPDLFIQSFSLETGAIG-KPRRLLNEAFGT--- 282 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC----CcceeEEEeecccCCCC-cceEeecCCCCC---
Confidence 5789999999888887766554333222222345654432211 00012233555442100 011121111000
Q ss_pred cceEEEEECCE-EEEEeeeC--CeEEEEECCCC-ce-eecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCC
Q 016552 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVAN-TW-DDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMD 316 (387)
Q Consensus 244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~-~W-~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~ 316 (387)
.......-||+ |++....+ ..++.++.... .- ..+.. .......+...-.|++|++..... ..|++||++++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 01122334565 55443222 35666665421 11 11111 011111222223345566554332 36999999999
Q ss_pred ceeEccccccccCceEEEEeCCe-EEEEec--CCCeEEEEeccCC
Q 016552 317 DWKEVVKSDLLKGARHAAAGGGR-VCAVCE--NGGGIVVVDVKAA 358 (387)
Q Consensus 317 ~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg--~~~~i~~~d~~~~ 358 (387)
+.+.+...+...... ...-+|+ |++... +...++++|+.++
T Consensus 362 ~~~~Lt~~~~~~~~p-~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 362 RDYQLTTSPENKESP-SWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CeEEccCCCCCccce-EECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 888776432221122 2334555 444433 2467889998865
No 265
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=43.68 E-value=4.6e+02 Score=28.46 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=80.5
Q ss_pred cceEEEEECCC-CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE
Q 016552 213 AKSVEKWDLMN-GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 213 ~~~v~~yd~~~-~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
...+.+|.... ++ -+.++.+...-. ..+.+.++|++.+ +.+..+..|+..+++ ++. .......+..
T Consensus 806 ~GRIivfe~~e~~~----L~~v~e~~v~Ga---v~aL~~fngkllA--~In~~vrLye~t~~~--eLr--~e~~~~~~~~ 872 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNS----LELVAETVVKGA---VYALVEFNGKLLA--GINQSVRLYEWTTER--ELR--IECNISNPII 872 (1096)
T ss_pred cceEEEEEEecCCc----eeeeeeeeeccc---eeehhhhCCeEEE--ecCcEEEEEEccccc--eeh--hhhcccCCeE
Confidence 34566666655 55 666665443222 1456677888653 334578889866551 221 1112223433
Q ss_pred E----EeCCeEEEEeCC-CCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 292 A----MDEEVLYGIDEN-SCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 292 ~----~~~~~ly~~~~~-~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+ +.++.+++-+-- +-.+..|+...+...++...-.+.--.++..+++..|+.+....+++++..++.
T Consensus 873 aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 873 ALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred EEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCC
Confidence 3 557777775532 235788999888898888765555455566788888888777677776655543
No 266
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=43.58 E-value=85 Score=31.87 Aligned_cols=54 Identities=13% Similarity=-0.018 Sum_probs=31.2
Q ss_pred CeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCCC----CeEEEEeCCCC
Q 016552 263 AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENS----CTLSRYDEVMD 316 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~----~~l~~yd~~~~ 316 (387)
..+.+|.|.+..=..-...-+.+-+++.+. +++|++.++.|-+ ..+.+||.++-
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 467788887764222222223344444444 6788877776532 35888987654
No 267
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.36 E-value=49 Score=19.59 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=10.4
Q ss_pred eEEEEeCCCCeEEEEeCCCC
Q 016552 297 VLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 297 ~ly~~~~~~~~l~~yd~~~~ 316 (387)
.+|+- ..+|.++++|.+++
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG 20 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTG 20 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTT
T ss_pred EEEEe-CCCCEEEEEECCCC
Confidence 34443 34556666666665
No 268
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=42.98 E-value=67 Score=18.97 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=18.4
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCce
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDDW 318 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~W 318 (387)
+++||+.....+.|.++|+++.+-
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeE
Confidence 467888876678899999976643
No 269
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=42.84 E-value=2e+02 Score=24.46 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCeEEEEeCC-CCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC---CeEEEEeccCC
Q 016552 295 EEVLYGIDEN-SCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG---GGIVVVDVKAA 358 (387)
Q Consensus 295 ~~~ly~~~~~-~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~---~~i~~~d~~~~ 358 (387)
+.++.++.+. ...+..||.+. ..+...+...........+|+.++++|.+ +.+.+||..+.
T Consensus 71 g~~favi~g~~~~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4566565443 35789999963 33333332222344455678888887643 56899999844
No 270
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.66 E-value=2.3e+02 Score=24.75 Aligned_cols=194 Identities=13% Similarity=0.021 Sum_probs=96.1
Q ss_pred ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEEEeCCEEEEEecCCCCCCCCCcce
Q 016552 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGCSRGAVYVASGIGSQFSSDVAKS 215 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 215 (387)
.+.......+|+++.-.|.-+ .+.+.++|..+.+-..-.+++.++. .-.....++.+|..-=.. ..
T Consensus 46 sfTQGL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e--------gv 112 (262)
T COG3823 46 SFTQGLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE--------GV 112 (262)
T ss_pred hhhcceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc--------ce
Confidence 334556677888888877433 3578999999765433223332342 334556778888763211 24
Q ss_pred EEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCce-eecc---cccccCCCCcEE
Q 016552 216 VEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW-DDMR---EGMVRGWRGPVA 291 (387)
Q Consensus 216 v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W-~~~~---~~~~~~~~~~~~ 291 (387)
...||..+-+ .+...+ +....- +...|++-.+|+.-...+..-||++-.= .++. .+.|-.. -.-.
T Consensus 113 af~~d~~t~~------~lg~~~---y~GeGW-gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~-LNEL 181 (262)
T COG3823 113 AFKYDADTLE------ELGRFS---YEGEGW-GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSK-LNEL 181 (262)
T ss_pred eEEEChHHhh------hhcccc---cCCcce-eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccc-ccce
Confidence 4666665433 222222 222212 2233444333332222444446654211 1111 1111000 0111
Q ss_pred EEeCCeEEEEeCCCCeEEEEeCCCC---ceeEccccccccC--------ceEEE--EeCCeEEEEecCCCeEEEEe
Q 016552 292 AMDEEVLYGIDENSCTLSRYDEVMD---DWKEVVKSDLLKG--------ARHAA--AGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 292 ~~~~~~ly~~~~~~~~l~~yd~~~~---~W~~v~~~~~~~~--------~~~~~--~~~g~i~v~gg~~~~i~~~d 354 (387)
-.++|.||.---.+..|.+.||+++ .|.++..+++... .-+++ .-++++|+.|..=..++...
T Consensus 182 E~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 182 EWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred eeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 2345666653333567888899887 5888887654221 12222 23578888866545554443
No 271
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.43 E-value=2e+02 Score=25.59 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCe
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR 339 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~ 339 (387)
.|.||+..-+.+++..+|+.+++=-.--.+| .....+++.+|+
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence 6789998877889999999998543333334 223334444444
No 272
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.55 E-value=3.7e+02 Score=26.74 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=24.3
Q ss_pred ccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCC
Q 016552 165 RPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGS 206 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 206 (387)
.+.+|++.+++-.+-.- ..+-..++.+.. +|+|.- ||.+.
T Consensus 268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDR 308 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDR 308 (626)
T ss_pred eEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccc
Confidence 57899998887766433 333344444444 556655 77654
No 273
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=41.13 E-value=3.3e+02 Score=26.02 Aligned_cols=152 Identities=16% Similarity=0.040 Sum_probs=82.6
Q ss_pred ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 224 (387)
.+.++|+..+. .+.+.++|..+++-..-.+....-...+....++++||..... ..+.+.+.|..++
T Consensus 84 ~~~~vyv~~~~-------~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~------~~~~vsvid~~t~ 150 (381)
T COG3391 84 AGNKVYVTTGD-------SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN------GNNTVSVIDAATN 150 (381)
T ss_pred CCCeEEEecCC-------CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc------CCceEEEEeCCCC
Confidence 45678888652 3568888866665443222221111122223356899985432 2357888999988
Q ss_pred ccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCceeecc--cccccCCCCcEEE--EeCCeEE
Q 016552 225 EKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTWDDMR--EGMVRGWRGPVAA--MDEEVLY 299 (387)
Q Consensus 225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~--~~~~~~~~~~~~~--~~~~~ly 299 (387)
+ =... .+..... . ..++-- +.++|+.....+.+..+|+.+..=..-. .....+..-...+ ..+.++|
T Consensus 151 ~----~~~~--~~vG~~P-~-~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 151 K----VTAT--IPVGNTP-T-GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred e----EEEE--EecCCCc-c-eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence 7 3322 2222111 1 223322 4569998855578999998877432211 1111111112222 2466788
Q ss_pred EEeCCC--CeEEEEeCCCCc
Q 016552 300 GIDENS--CTLSRYDEVMDD 317 (387)
Q Consensus 300 ~~~~~~--~~l~~yd~~~~~ 317 (387)
+....+ +.+...|..++.
T Consensus 223 V~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred EEeccCCCceEEEEeCCCce
Confidence 887655 578888888764
No 274
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.03 E-value=3e+02 Score=25.54 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=35.3
Q ss_pred EeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcccccc
Q 016552 258 VNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 258 ~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~ 326 (387)
-|..+..+.++|+.... +.++. .........+++ .++.+..+...+..+..||+..+ .+..+|+
T Consensus 373 SgSDDrTvKvWdLrNMR-splAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~---RlaRlPr 437 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMR-SPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN---RLARLPR 437 (481)
T ss_pred ecCCCceEEEeeecccc-Cccee-eecCCccceeEeecCCceEEeccCCceEEEEecCCC---ccccCCc
Confidence 33344678888776542 11211 111111223333 45568777766778999999988 4455553
No 275
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=40.91 E-value=1.2e+02 Score=30.77 Aligned_cols=99 Identities=18% Similarity=0.088 Sum_probs=50.5
Q ss_pred EEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCc-----EEE-EeCCeEEEEeCCCCeEEEEeCCCC
Q 016552 248 AVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGP-----VAA-MDEEVLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 248 ~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~-----~~~-~~~~~ly~~~~~~~~l~~yd~~~~ 316 (387)
......|||.+--+. -.+-.||+.-.-|............++ ..+ .-+|+....-+.+|++.+|++...
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 444567888765443 223446666666653322111111111 111 112333332234678999998765
Q ss_pred ceeEcc--ccccccCceEEEEeCCeEEEEecC
Q 016552 317 DWKEVV--KSDLLKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 317 ~W~~v~--~~~~~~~~~~~~~~~g~i~v~gg~ 346 (387)
.=..-. .+...+++-.+.+++|+++|+.|.
T Consensus 753 e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 753 EQPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred CCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 322111 112245566677899999998873
No 276
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=40.56 E-value=2.9e+02 Score=25.25 Aligned_cols=186 Identities=11% Similarity=0.130 Sum_probs=94.7
Q ss_pred CCEEEEEe-cccCCCC----CCCCccEEEeccCCceeeCCCCC----CCCcceeEEEeC--------CEEEEEecCCCCC
Q 016552 146 SGKLILLA-ATTHNFN----PALTRPLIFDPICRTWTFGPELV----TPRRWCAAGCSR--------GAVYVASGIGSQF 208 (387)
Q Consensus 146 ~~~l~v~G-G~~~~~~----~~~~~~~vyd~~t~~W~~l~~~p----~~r~~~~~~~~~--------~~iyv~GG~~~~~ 208 (387)
.+.|+|+- |.-.... .....+.+||+.|++-.+.-++| .+.+.....+++ +.+|+.--
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~----- 85 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS----- 85 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-----
Confidence 46788884 3211111 22347899999999865422222 233444433332 35777632
Q ss_pred CCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEe-e----e--C----CeEEEEECCCC-cee
Q 016552 209 SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVN-V----K--G----AEGAVYDVVAN-TWD 276 (387)
Q Consensus 209 ~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~g-g----~--~----~~i~~yD~~~~-~W~ 276 (387)
....+.+||..+++ .|+.......+. .......++|..+-.. | . . ....-|.+-+. ++-
T Consensus 86 ---~~~glIV~dl~~~~---s~Rv~~~~~~~~---p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly 156 (287)
T PF03022_consen 86 ---GGPGLIVYDLATGK---SWRVLHNSFSPD---PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLY 156 (287)
T ss_dssp ---TTCEEEEEETTTTE---EEEEETCGCTTS----SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEE
T ss_pred ---CcCcEEEEEccCCc---EEEEecCCccee---ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEE
Confidence 12388999999987 388776422221 1123444566544221 1 0 0 12344554333 232
Q ss_pred ecccc-------------------ccc-CCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCC----CceeEcccccc-ccCc
Q 016552 277 DMREG-------------------MVR-GWRGPVAAM-DEEVLYGIDENSCTLSRYDEVM----DDWKEVVKSDL-LKGA 330 (387)
Q Consensus 277 ~~~~~-------------------~~~-~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~----~~W~~v~~~~~-~~~~ 330 (387)
.++.. +.. +....+.++ .+|.||+-.-..+.|.+||+.+ +....+...+. +..+
T Consensus 157 ~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~p 236 (287)
T PF03022_consen 157 RVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWP 236 (287)
T ss_dssp EEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSE
T ss_pred EEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecc
Confidence 33210 000 111122333 4678998877788999999988 55667766665 5555
Q ss_pred eEEEEeC---CeEEEEec
Q 016552 331 RHAAAGG---GRVCAVCE 345 (387)
Q Consensus 331 ~~~~~~~---g~i~v~gg 345 (387)
-.+...+ |.||++..
T Consensus 237 d~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 237 DGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEEE-T--TS-EEEEE-
T ss_pred ceeeeccccCceEEEEEC
Confidence 5455444 88999854
No 277
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.44 E-value=5e+02 Score=27.96 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred ceEEEEECC--EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCC--EEEEEecCCCCCCCCCcc
Q 016552 139 PVQLVSLSG--KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG--AVYVASGIGSQFSSDVAK 214 (387)
Q Consensus 139 ~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~ 214 (387)
|...++... -|+|-|| +...-.+|.++ .|+.|+.- .+...-...+++.+.. .+++-.|.+.
T Consensus 208 GVNwaAfhpTlpliVSG~-----DDRqVKlWrmn-etKaWEvD-tcrgH~nnVssvlfhp~q~lIlSnsEDk-------- 272 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGA-----DDRQVKLWRMN-ETKAWEVD-TCRGHYNNVSSVLFHPHQDLILSNSEDK-------- 272 (1202)
T ss_pred ccceEEecCCcceEEecC-----CcceeeEEEec-cccceeeh-hhhcccCCcceEEecCccceeEecCCCc--------
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD 294 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~ 294 (387)
++.+||....+ =.+.-.-...||= +.++--...+|..|..+ .+.+| ...+..++.++.
T Consensus 273 sirVwDm~kRt----~v~tfrrendRFW---~laahP~lNLfAAgHDs-Gm~VF--------------kleRErpa~~v~ 330 (1202)
T KOG0292|consen 273 SIRVWDMTKRT----SVQTFRRENDRFW---ILAAHPELNLFAAGHDS-GMIVF--------------KLERERPAYAVN 330 (1202)
T ss_pred cEEEEeccccc----ceeeeeccCCeEE---EEEecCCcceeeeecCC-ceEEE--------------EEcccCceEEEc
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCc
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDD 317 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~ 317 (387)
+|.||.+ ....|..||..+.+
T Consensus 331 ~n~LfYv--kd~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 331 GNGLFYV--KDRFIRSYDLRTQK 351 (1202)
T ss_pred CCEEEEE--ccceEEeeeccccc
No 278
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=39.95 E-value=2.4e+02 Score=24.08 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEEC-CEEEEEecccCCCCCCCCccEEEeccCCcee
Q 016552 99 PIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLS-GKLILLAATTHNFNPALTRPLIFDPICRTWT 177 (387)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~ 177 (387)
--.+|++|..++.|..+..-+..-.. . +-.+.-++ ..|.++=|...+.-..-..+|+|++.|+.-.
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~----------s---PK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~ 153 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKY----------S---PKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLT 153 (200)
T ss_pred ceeEEEEecCCCceEEEEecCccccc----------C---CceeEEecCCcEEEEEccccceEccCCeEEEEEccCCcee
Confidence 33589999999888765332221000 0 01223333 3444443322222222346899999999999
Q ss_pred eCCCCCCCCcceeEEE-eCCE
Q 016552 178 FGPELVTPRRWCAAGC-SRGA 197 (387)
Q Consensus 178 ~l~~~p~~r~~~~~~~-~~~~ 197 (387)
.+-+..........+. .++.
T Consensus 154 ~ly~~~dkkqQVis~e~~gd~ 174 (200)
T PF15525_consen 154 ELYEWKDKKQQVISAEKNGDN 174 (200)
T ss_pred EeeeccccceeEEEEEEeCCE
Confidence 9888765544433333 3443
No 279
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=37.35 E-value=3.4e+02 Score=25.06 Aligned_cols=59 Identities=10% Similarity=0.208 Sum_probs=32.7
Q ss_pred eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeec
Q 016552 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDM 278 (387)
Q Consensus 215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~ 278 (387)
.+.++|..|-+ =...-.|+...+. +..+.+...-.|...|..+..+..-|.+++..+..
T Consensus 125 tlKVWDtnTlQ----~a~~F~me~~VYs-hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~ 183 (397)
T KOG4283|consen 125 TLKVWDTNTLQ----EAVDFKMEGKVYS-HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT 183 (397)
T ss_pred eEEEeecccce----eeEEeecCceeeh-hhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence 66777776665 2333345444332 11222333345555555566778888888877644
No 280
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=36.42 E-value=5.7e+02 Score=27.41 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=38.8
Q ss_pred CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552 296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~ 357 (387)
...++.+...+.+.+|.....+=..+-..--..-..+++..+|+..++|+....|-+++...
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 34566666678899998765533322211112234666777888989988877777776663
No 281
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.57 E-value=3.8e+02 Score=24.82 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=74.1
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE---ECCEEEEEeeeC---CeEEEEECCCCceeecccccccCCC
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG---WKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWR 287 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~---~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~ 287 (387)
+.++.||.++++-.-.|.+--.-+...+. . .+-.. ++++|++.-..+ -.++..|..++.=+.+...+..
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaG-E-VSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~--- 152 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAG-E-VSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL--- 152 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCcccccc-c-hhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc---
Confidence 46889998888754446654433322211 1 12223 357888876555 4567777777766555432111
Q ss_pred CcEEEEeCCeEEEEeC---CCCeEEEEeCCCCce--eEcccccc-------ccCceEEEEeCCeEEEEecCCCeEEEEec
Q 016552 288 GPVAAMDEEVLYGIDE---NSCTLSRYDEVMDDW--KEVVKSDL-------LKGARHAAAGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 288 ~~~~~~~~~~ly~~~~---~~~~l~~yd~~~~~W--~~v~~~~~-------~~~~~~~~~~~g~i~v~gg~~~~i~~~d~ 355 (387)
-...+.+-..|-+.. ....|.+||+.+++| +....... .+....++...++++.|-++ .+.+.|+
T Consensus 153 -KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG--Gi~vgnP 229 (339)
T PF09910_consen 153 -KGTLVHDYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG--GIFVGNP 229 (339)
T ss_pred -CceEeeeeEEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec--cEEEeCC
Confidence 123344434443311 124699999999999 33321111 12345567777888877443 2555555
Q ss_pred c
Q 016552 356 K 356 (387)
Q Consensus 356 ~ 356 (387)
.
T Consensus 230 ~ 230 (339)
T PF09910_consen 230 Y 230 (339)
T ss_pred C
Confidence 5
No 282
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=34.56 E-value=2.5e+02 Score=26.15 Aligned_cols=61 Identities=10% Similarity=-0.032 Sum_probs=41.9
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.|.+..+|..+|.+..||..|-. +..+ .....+.+ +-.-+|+.++.......+..||+..+
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred CcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 45677788888999999998864 3332 11222322 33457888888888888888888855
No 283
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.41 E-value=4.8e+02 Score=25.98 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceeEcccccc-ccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+|..+.+|...|.+..||.++. ..+..+.. ......+.+.++.++..|.....|..+|+...
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecc
Confidence 5677788878899999998765 23333333 44456777888899999888899999998854
No 284
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=34.18 E-value=3.9e+02 Score=24.89 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=27.6
Q ss_pred ccEEEeccCCceeeCCCCCCCCcceeEE---EeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552 165 RPLIFDPICRTWTFGPELVTPRRWCAAG---CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 225 (387)
.+.+||..|.. ++.|-.+...+... .-+|+..+....+. .+..+|...++
T Consensus 46 ~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~--------si~lwDl~~gs 98 (405)
T KOG1273|consen 46 RVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDW--------SIKLWDLLKGS 98 (405)
T ss_pred cEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCc--------eeEEEeccCCC
Confidence 68999999877 33343322222222 23566656544332 56667776666
No 285
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=33.81 E-value=6e+02 Score=26.97 Aligned_cols=57 Identities=14% Similarity=-0.089 Sum_probs=31.2
Q ss_pred CeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEc
Q 016552 263 AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEV 321 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v 321 (387)
-.|.+||..+.+=...=. ..+-.-...+ ..+|+-.+....+++|..||.-+..-...
T Consensus 556 f~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 467889988764211100 0111111122 23667666655568899999988765543
No 286
>PRK10115 protease 2; Provisional
Probab=33.31 E-value=5.9e+02 Score=26.68 Aligned_cols=148 Identities=7% Similarity=-0.105 Sum_probs=73.1
Q ss_pred CccEEEec--cCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECC-CCccccCeEEcCCCCCCC
Q 016552 164 TRPLIFDP--ICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 164 ~~~~vyd~--~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~~~~~W~~~~~~p~~~ 240 (387)
+.++.|+. .+..|..+-+.+.. ........++.+|+.--.+. ....+...+.. ++. |+.+-+.....
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~-----~~~~l~~~~~~~~~~----~~~l~~~~~~~ 316 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHG-----KNFGLYRTRVRDEQQ----WEELIPPRENI 316 (686)
T ss_pred ccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCC-----CCceEEEecCCCccc----CeEEECCCCCC
Confidence 45677763 23444332222221 12223344678888754322 12245555665 466 98876442221
Q ss_pred ccccceEEEEECCEEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEE--EeCCeEEEEeC---CCCeEEEEeC
Q 016552 241 FSREAIDAVGWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDE---NSCTLSRYDE 313 (387)
Q Consensus 241 ~~~~~~~~~~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~~~ly~~~~---~~~~l~~yd~ 313 (387)
. .......++.|++..-.. ..+.++|..++....+.-..+......... ..++.+++.-. .-+.++.||+
T Consensus 317 ~---i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 393 (686)
T PRK10115 317 M---LEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDM 393 (686)
T ss_pred E---EEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEEC
Confidence 1 122334577777665433 567888876655554431011110000000 11234444332 2357999999
Q ss_pred CCCceeEcccc
Q 016552 314 VMDDWKEVVKS 324 (387)
Q Consensus 314 ~~~~W~~v~~~ 324 (387)
++++|+.+...
T Consensus 394 ~~~~~~~l~~~ 404 (686)
T PRK10115 394 DTGERRVLKQT 404 (686)
T ss_pred CCCcEEEEEec
Confidence 99998877643
No 287
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=32.97 E-value=3.7e+02 Score=24.29 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=75.7
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC---CCCccccCeEEc--CCCCCC----CccccceEEEEECCEEEE
Q 016552 187 RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL---MNGEKNSRWEKT--GELKDG----RFSREAIDAVGWKGKLCL 257 (387)
Q Consensus 187 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~---~~~~~~~~W~~~--~~~p~~----~~~~~~~~~~~~~g~lyv 257 (387)
++++++++++++|.+--...- ....+...+.||- ..+. |+.. +..+.. ......|+.+.+++.-|.
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~-a~~km~~~~Lw~RpMF~~sp----W~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA 150 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTV-ASNKMVRAELWSRPMFHDSP----WRITELGTIASFTSAGVAVTELHSFATIDDNQFA 150 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEET-TT--EEEEEEEEEE-STTS------EEEEEES-TT--------SEEEEEEE-SSS-EE
T ss_pred eeeeeeeecceeeEEEeehhh-hhhhhhhhhhhcccccccCC----ceeeecccccccccccceeeeeeeeeEecCCcee
Confidence 466788999999876332111 2234555666764 5666 8754 333321 112233667778888788
Q ss_pred EeeeC-----Ce-EEEEECCC-C-----ceeecccccccCCCCcEEEEeCCeEEEEeCC-----CC-eEEEEeCCCCcee
Q 016552 258 VNVKG-----AE-GAVYDVVA-N-----TWDDMREGMVRGWRGPVAAMDEEVLYGIDEN-----SC-TLSRYDEVMDDWK 319 (387)
Q Consensus 258 ~gg~~-----~~-i~~yD~~~-~-----~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~-----~~-~l~~yd~~~~~W~ 319 (387)
+|... .. ...|-+.. + .=+.++......-..+++-..+|.||+.... -| .+.+-+.....|.
T Consensus 151 ~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~ 230 (367)
T PF12217_consen 151 VGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWS 230 (367)
T ss_dssp EEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-E
T ss_pred EEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchh
Confidence 87643 22 22332211 0 1122332222222345666789999998631 12 4777778888999
Q ss_pred Ecccccccc-CceEEEEeCCeEEEEec
Q 016552 320 EVVKSDLLK-GARHAAAGGGRVCAVCE 345 (387)
Q Consensus 320 ~v~~~~~~~-~~~~~~~~~g~i~v~gg 345 (387)
.+.-+.... ...-.+..++.||+||.
T Consensus 231 slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 231 SLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEE-TT---SS---EEEETTEEEEEEE
T ss_pred hccccccccccCCCceeeCCEEEEEec
Confidence 876543332 23445678999999985
No 288
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=32.67 E-value=3.6e+02 Score=24.07 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=81.8
Q ss_pred ceEEEEECCEEEEEecccCCCCCCCCccEEEeccCC---ceeeCCCCCCC---------CcceeEEEeCCEEEEEecCCC
Q 016552 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR---TWTFGPELVTP---------RRWCAAGCSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~---~W~~l~~~p~~---------r~~~~~~~~~~~iyv~GG~~~ 206 (387)
|..-++.+|.+|.-.+ ..+.+..||..+. .|..+|.+... -...-.++...-++|+=-..+
T Consensus 70 gTg~VVynGs~yynk~-------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~ 142 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKA-------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPE 142 (249)
T ss_pred ccceEEEcceEEeecc-------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccc
Confidence 3455667777766543 2346788999884 46666654321 122334555566666533222
Q ss_pred CCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeE-EEEECCCCceeeccccc
Q 016552 207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEG-AVYDVVANTWDDMREGM 282 (387)
Q Consensus 207 ~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i-~~yD~~~~~W~~~~~~~ 282 (387)
. .+ .-.+-..|+.+=...-.|...-+-+ .. ..+.++-|.+|++.... ..| .+||..+++=+.++-..
T Consensus 143 ~-~g--~iv~skLdp~tl~~e~tW~T~~~k~--~~----~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf 213 (249)
T KOG3545|consen 143 N-AG--TIVLSKLDPETLEVERTWNTTLPKR--SA----GNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPF 213 (249)
T ss_pred c-CC--cEEeeccCHHHhheeeeeccccCCC--Cc----CceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccc
Confidence 1 11 1112445553222111265433211 11 33566678899986644 223 68999988765554322
Q ss_pred ccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 016552 283 VRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEV 314 (387)
Q Consensus 283 ~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~ 314 (387)
+......+.. ..+.+||+.+ +|.+..|+++
T Consensus 214 ~N~y~~~~~idYNP~D~~LY~wd--ng~~l~y~l~ 246 (249)
T KOG3545|consen 214 PNPYSYATMIDYNPRDRRLYAWD--NGHQLTYNLT 246 (249)
T ss_pred cchhhhhhccCCCcccceeeEec--CCcEEEEEeE
Confidence 2222222222 2367899884 6677777763
No 289
>PTZ00334 trans-sialidase; Provisional
Probab=32.29 E-value=4.3e+02 Score=28.05 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=49.9
Q ss_pred CeEEEEECCCCceeecccccccCCCCcEEEEeC-CeEEEEeCC-CCeEEEE--eCCCCceeEc-ccccc-----------
Q 016552 263 AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE-EVLYGIDEN-SCTLSRY--DEVMDDWKEV-VKSDL----------- 326 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~-~~ly~~~~~-~~~l~~y--d~~~~~W~~v-~~~~~----------- 326 (387)
..+.+|....+.|..-....+.+...++++..+ ++|.++... +|.-.+| .-..++|.+- ..+++
T Consensus 287 vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG~RrVYES~DmG~tWtEAlGTLsrVW~ns~~~~~~ 366 (780)
T PTZ00334 287 VSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDDGRRRVYESGDKGDSWTEALGTLSRVWGNKQKGNEK 366 (780)
T ss_pred EEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCCCCEEEEEECCCCCChhhCCCccceeeccCCCCCCC
Confidence 457788777778965444344555678888875 888887643 4543444 4456789873 33332
Q ss_pred -ccCceEEEEeCCe-EEEEe
Q 016552 327 -LKGARHAAAGGGR-VCAVC 344 (387)
Q Consensus 327 -~~~~~~~~~~~g~-i~v~g 344 (387)
....+..+.++++ ++++.
T Consensus 367 ~~~~~~iTatIe~r~VML~T 386 (780)
T PTZ00334 367 GVGSGFSTATIENRDVMLVT 386 (780)
T ss_pred CCCCccEEEEECCCEEEEEe
Confidence 2335656666655 54444
No 290
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.01 E-value=4.8e+02 Score=25.22 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=67.1
Q ss_pred eEEEEECCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceeEcc
Q 016552 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSRYDEVMDDWKEVV 322 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~--~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~ 322 (387)
+..++++...++-|..+..+-.+|..+..=. .++ .+-...++. ..+..|... ..+..+.+.|..+..=....
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee----cCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEe
Confidence 3445555555555555566777776554322 222 221222222 223334333 34556788888776544433
Q ss_pred cccccc----CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE--eCCCCc-eeEEEEEcc
Q 016552 323 KSDLLK----GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGF-EALSVHIMP 381 (387)
Q Consensus 323 ~~~~~~----~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~--~~p~~~-~~~~~~~~~ 381 (387)
.-+..+ -...+...++..+..|+.++.+++|++.++ +-+- ..+..- .+++++..|
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg----KlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG----KLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCc----eEEEEeccCCCCcceEEEEEcC
Confidence 323222 134455667777777777889999999976 4442 122111 466666655
No 291
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=31.89 E-value=1.3e+02 Score=29.25 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=38.3
Q ss_pred eCCeEEEEeC-CCCeEEEEeCCCCceeEccccccccCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552 294 DEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 294 ~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~ 356 (387)
.+.-.|++++ ..+.||.|...++.--.+- ....+.-.++... +|..++.||..+.+.+|++.
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 3334566665 6889999999887433222 2233444555554 46666666667788888665
No 292
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=31.77 E-value=4.4e+02 Score=24.70 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCeEEEEeCCC-CceeEcccccc---------ccCceEEEEeCCeEEEEe
Q 016552 296 EVLYGIDENSCTLSRYDEVM-DDWKEVVKSDL---------LKGARHAAAGGGRVCAVC 344 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~~-~~W~~v~~~~~---------~~~~~~~~~~~g~i~v~g 344 (387)
+.+..-|..+|.|.+||.++ ..|..+..... +..+..+++.+.++|-.-
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYP 367 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCC
Confidence 34444454678899999988 66766554321 112344555666666553
No 293
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.63 E-value=1.9e+02 Score=22.16 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=28.5
Q ss_pred CCeEEEEEeCCCC-CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEE
Q 016552 98 TPIHLFTFDPVSS-TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL 152 (387)
Q Consensus 98 ~~~~~~~~d~~~~-~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 152 (387)
..-+++.||+.++ .|.+...-+. ...+++|+. +-.|.++..++.-.++
T Consensus 9 arA~V~~yd~~tKk~WvPs~~~~~---~V~~y~~~~----~ntfRIi~~~~~~~iI 57 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASKHAV---TVSYFYDST----RNVYRIISVGGTKAII 57 (111)
T ss_pred eeeEEEEECCCCcceeEeCCCCce---eEEEEecCC----CcEEEEEEecCcEEEE
Confidence 3456899999875 9976554222 222334332 4457777776665555
No 294
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=31.22 E-value=7.2e+02 Score=27.08 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=82.9
Q ss_pred CEEEEEecccC-CC--CCCCCccEEEeccC-CceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552 147 GKLILLAATTH-NF--NPALTRPLIFDPIC-RTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLM 222 (387)
Q Consensus 147 ~~l~v~GG~~~-~~--~~~~~~~~vyd~~t-~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 222 (387)
+..|++|.... +. ......+.+|.... ++-+.++.+...-...+.+.++||+.+.=| ..+..|+-.
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In----------~~vrLye~t 856 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN----------QSVRLYEWT 856 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC----------cEEEEEEcc
Confidence 45777775322 11 22344566776665 777777777666666677778888866422 267778766
Q ss_pred CCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEE
Q 016552 223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGI 301 (387)
Q Consensus 223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~ 301 (387)
+++. -..-...-.+.. ....-+.++.|++-.-.. -.+..|+...+...+++......|... +...++..|+.
T Consensus 857 ~~~e---Lr~e~~~~~~~~---aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmta-veil~~d~ylg 929 (1096)
T KOG1897|consen 857 TERE---LRIECNISNPII---ALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTA-VEILDDDTYLG 929 (1096)
T ss_pred ccce---ehhhhcccCCeE---EEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceee-EEEecCceEEe
Confidence 6630 111111111111 012334567777654332 567889999999999986555555433 33445566776
Q ss_pred eCCCCeE
Q 016552 302 DENSCTL 308 (387)
Q Consensus 302 ~~~~~~l 308 (387)
+...|.+
T Consensus 930 ae~~gNl 936 (1096)
T KOG1897|consen 930 AENSGNL 936 (1096)
T ss_pred ecccccE
Confidence 6555543
No 295
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.74 E-value=98 Score=16.91 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=13.7
Q ss_pred eCCeEEEEeCCCCeEEEE
Q 016552 294 DEEVLYGIDENSCTLSRY 311 (387)
Q Consensus 294 ~~~~ly~~~~~~~~l~~y 311 (387)
.+|.||+.+.....|.+|
T Consensus 11 ~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 11 SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp TTSEEEEEECCCTEEEEE
T ss_pred CCCCEEEEECCCCEEEEC
Confidence 678999998766677665
No 296
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=29.41 E-value=5.8e+02 Score=25.43 Aligned_cols=100 Identities=9% Similarity=-0.014 Sum_probs=55.7
Q ss_pred EEEEEeeeCCeEEEEECCCCceeecccccccCCC--CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCce
Q 016552 254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR--GPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGAR 331 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~--~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~ 331 (387)
.+.+.-|.+ .+.-++++.+.-.+........-. ..++++..+-=.+.|.++|.|.+|+..++.-.+-.. ....+-+
T Consensus 214 nliit~Gk~-H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~ 291 (626)
T KOG2106|consen 214 NLIITCGKG-HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVF 291 (626)
T ss_pred cEEEEeCCc-eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceE
Confidence 344444443 566678887776655442221111 223333332223444456889999998775544222 3344456
Q ss_pred EEEEeC-CeEEEEecCCCeEEEEecc
Q 016552 332 HAAAGG-GRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 332 ~~~~~~-g~i~v~gg~~~~i~~~d~~ 356 (387)
++...+ |.|+- ||..-.|..+|-.
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDN 316 (626)
T ss_pred EEEEecCccEee-cCccceEEecccc
Confidence 666665 55554 8888888888843
No 297
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.38 E-value=3e+02 Score=22.08 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=34.9
Q ss_pred EEEEeeeCCeEEEEECCCCc---eeecccccccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCCCC--ceeEc
Q 016552 255 LCLVNVKGAEGAVYDVVANT---WDDMREGMVRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEVMD--DWKEV 321 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~~---W~~~~~~~~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v 321 (387)
+.++| ....+.+||.+.++ +++++++.. ..... -....|.++|| +..|.-||.+.+ -|...
T Consensus 66 ~LliG-t~t~llaYDV~~N~d~Fyke~~DGvn----~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 66 CLLIG-TQTSLLAYDVENNSDLFYKEVPDGVN----AIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred EEEEe-ccceEEEEEcccCchhhhhhCcccee----EEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEec
Confidence 33443 33589999999885 566654211 11111 11345667765 457888888776 36543
No 298
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=29.32 E-value=81 Score=28.42 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=18.7
Q ss_pred CCCCCCCChHHHHHHHhhhcC
Q 016552 39 HQPLLPGLPDHIAHLCLSHVH 59 (387)
Q Consensus 39 ~~~~~~~LPddl~~~iL~rLP 59 (387)
...-+..||.+++.+||.|||
T Consensus 198 ~~ltl~dLP~e~vl~Il~rls 218 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLS 218 (332)
T ss_pred CCCCcccchHHHHHHHHHHcc
Confidence 455688999999999999999
No 299
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=4.6e+02 Score=24.18 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=66.3
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~ 292 (387)
+++..||..+.+ -...-..+ .+..+...-+..... +|--...+.+|...++.+++--..=.+-......-.+.
T Consensus 36 Dsl~LYd~~~g~----~~~ti~sk--kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s 109 (311)
T KOG1446|consen 36 DSLRLYDSLSGK----QVKTINSK--KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS 109 (311)
T ss_pred CeEEEEEcCCCc----eeeEeecc--cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEec
Confidence 378899998887 43322222 122111111111222 22111122556666777666533222111111111222
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
-.+ ..|+-+..++.+..||....+-+.+-. ....+.++.--.|-|+.++-++..|-+||+..-
T Consensus 110 P~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 110 PKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred CCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 223 567766667789999997654333222 222233333345777777666668888887744
No 300
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=28.75 E-value=4.4e+02 Score=23.84 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=69.2
Q ss_pred ceEEEEECCEEEEEecccCCCCCCCCccEEEe---ccCCceee--CCCCCC-------CCcceeEEEeCCEEEEEecCCC
Q 016552 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFD---PICRTWTF--GPELVT-------PRRWCAAGCSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd---~~t~~W~~--l~~~p~-------~r~~~~~~~~~~~iyv~GG~~~ 206 (387)
++++-+++++||.+--........+...+.|| ...+.|+. |+-.+. .-..|+.+.+++.-|.+|=...
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 36777889999887542221122233334454 24677876 444443 2246677788877776654332
Q ss_pred CCCCCCcceE-EEEECCCCccccCeEEcC-----CCCCCCcccc--ceEEEEECCEEEEEeeeC------CeEEEEECCC
Q 016552 207 QFSSDVAKSV-EKWDLMNGEKNSRWEKTG-----ELKDGRFSRE--AIDAVGWKGKLCLVNVKG------AEGAVYDVVA 272 (387)
Q Consensus 207 ~~~~~~~~~v-~~yd~~~~~~~~~W~~~~-----~~p~~~~~~~--~~~~~~~~g~lyv~gg~~------~~i~~yD~~~ 272 (387)
. - .-+.+ ..|=+ +. |..-. ..|.+ +.+. ..+.-.++|+||+..... ..+..-+..-
T Consensus 157 D--~-sPRe~G~~yfs--~~----~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G 226 (367)
T PF12217_consen 157 D--V-SPRELGFLYFS--DA----FASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNG 226 (367)
T ss_dssp S--S-SS-EEEEEEET--TT----TT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTT
T ss_pred C--C-CcceeeEEEec--cc----ccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccC
Confidence 1 1 11121 22211 11 21111 11121 1111 133457899999986433 4556666667
Q ss_pred CceeecccccccCCCCcEEEEeCCeEEEEeC
Q 016552 273 NTWDDMREGMVRGWRGPVAAMDEEVLYGIDE 303 (387)
Q Consensus 273 ~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~ 303 (387)
..|+.+.-.-..-....--+..|+.||+++.
T Consensus 227 ~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 227 QNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp SS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred CchhhccccccccccCCCceeeCCEEEEEec
Confidence 7898775311111123334566889999984
No 301
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=28.35 E-value=4.6e+02 Score=23.87 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEE
Q 016552 189 CAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVY 268 (387)
Q Consensus 189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~y 268 (387)
+..+-.+.+..+.|..+. ++..+|.++++....|..-.+...-.+.+....+.+.-++.. |+...+-+|
T Consensus 57 ~~Did~~s~~liTGSAD~--------t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m---g~~~~v~~f 125 (327)
T KOG0643|consen 57 CCDIDWDSKHLITGSADQ--------TAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM---GYTCFVSVF 125 (327)
T ss_pred EEEecCCcceeeeccccc--------eeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc---CcceEEEEE
Q ss_pred ECC-------CCc-eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceeEccccccccCceEEEEeCCe
Q 016552 269 DVV-------ANT-WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD-DWKEVVKSDLLKGARHAAAGGGR 339 (387)
Q Consensus 269 D~~-------~~~-W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~-~W~~v~~~~~~~~~~~~~~~~g~ 339 (387)
|.. .++ -.+++. .........-...+ +..+.|.++|.|-.||.+++ .-......-...-.--...-+..
T Consensus 126 di~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT 203 (327)
T ss_pred EccCChhhhcccCceEEecC-CccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc
Q ss_pred EEEEecCCCeEEEEeccC
Q 016552 340 VCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 340 i~v~gg~~~~i~~~d~~~ 357 (387)
.+|.|......-++|+.+
T Consensus 204 ~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRT 221 (327)
T ss_pred eEEecccCccceeeeccc
No 302
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=26.64 E-value=1.9e+02 Score=27.53 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=42.5
Q ss_pred EEEEeCCCCeEEEEeCCCCcee-EccccccccCceEEEEeC---CeEEEEecCCCeEEEEeccCC
Q 016552 298 LYGIDENSCTLSRYDEVMDDWK-EVVKSDLLKGARHAAAGG---GRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 298 ly~~~~~~~~l~~yd~~~~~W~-~v~~~~~~~~~~~~~~~~---g~i~v~gg~~~~i~~~d~~~~ 358 (387)
|...|+.+|.+.+||..+-+=. .|......+.+..++... ..++.++|..++|-++|++-.
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 5666777889999998654332 222333445555566544 889999999999999999854
No 303
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=26.55 E-value=1e+03 Score=27.79 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=28.7
Q ss_pred eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee
Q 016552 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV 260 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg 260 (387)
.+||||.+|.... .-.|... +. |-+++ +|.+.. +.++.+|+..+..+.
T Consensus 496 ~sGKvYYaGn~t~---------~Gl~e~G-~n----WmEL~-l~~~IV----q~SVG~D~~~~~~~A 543 (3738)
T KOG1428|consen 496 RSGKVYYAGNGTR---------FGLFETG-NN----WMELC-LPEPIV----QISVGIDTIMFRSGA 543 (3738)
T ss_pred cCccEEEecCccE---------EeEEccC-Cc----eEEec-CCCceE----EEEeccchhheeecc
Confidence 4789999875422 2223333 44 99988 444432 567777887665543
No 304
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.48 E-value=7.6e+02 Score=25.81 Aligned_cols=64 Identities=3% Similarity=-0.101 Sum_probs=36.6
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 293 MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
+.+|+-++-++.+|-+..||.++++-..--.--.-+--+-.+...+..++.||+++.+.+|.-.
T Consensus 556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 4456666666778899999999885533111111111222333344466666667777777544
No 305
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=26.34 E-value=2.3e+02 Score=26.05 Aligned_cols=73 Identities=12% Similarity=0.005 Sum_probs=41.5
Q ss_pred CeEEEEeCCCCeEEEEeCC-CCceeEccccccccCceEEEEe-----CCeEEEEecCCCeEEEEeccC--------CCCC
Q 016552 296 EVLYGIDENSCTLSRYDEV-MDDWKEVVKSDLLKGARHAAAG-----GGRVCAVCENGGGIVVVDVKA--------AAAP 361 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~-~~~W~~v~~~~~~~~~~~~~~~-----~g~i~v~gg~~~~i~~~d~~~--------~~~~ 361 (387)
..|...|+.++.+.+||.. .++|..-... ....+++.+ ....+..|..+..|.++|..+ .-.|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~k---vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G 254 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSK---VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG 254 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecce---eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc
Confidence 3566777788999999987 3333321111 111112221 233555655677788888762 2456
Q ss_pred CceEE-eCCCC
Q 016552 362 TIFVV-DTPLG 371 (387)
Q Consensus 362 ~~W~~-~~p~~ 371 (387)
..|.+ .+|.-
T Consensus 255 GVWRi~~~p~~ 265 (339)
T KOG0280|consen 255 GVWRIKHHPEI 265 (339)
T ss_pred ceEEEEecchh
Confidence 78997 66643
No 306
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=26.22 E-value=81 Score=25.86 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=15.3
Q ss_pred CCCCCCCChHHHHHHHhhhcC
Q 016552 39 HQPLLPGLPDHIAHLCLSHVH 59 (387)
Q Consensus 39 ~~~~~~~LPddl~~~iL~rLP 59 (387)
...--..+|++|..+.+.|+=
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm~ 66 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRMA 66 (153)
T ss_pred ccccccccCHHHHHHHHHHHH
Confidence 344456788999999888764
No 307
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=25.65 E-value=6.1e+02 Score=24.43 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=70.5
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA- 292 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~- 292 (387)
+.+.++|..|++. -..+. +|.-.+ ..+...||.+.+..-.+..+-++|+.+++=..-.. .-.+.....++
T Consensus 154 n~v~iWnv~tgea---li~l~-hpd~i~----S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raif 224 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA---LITLD-HPDMVY----SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIF 224 (472)
T ss_pred ceEEEEeccCCce---eeecC-CCCeEE----EEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEE
Confidence 4788889988872 22222 222111 12334577777776667889999999986432221 22333333344
Q ss_pred EeCCeEEEEeCC---CCeEEEEeCCCCceeEccccccc-cCceEEEE-eC---CeEEEEecCCCeEEEEeccCC
Q 016552 293 MDEEVLYGIDEN---SCTLSRYDEVMDDWKEVVKSDLL-KGARHAAA-GG---GRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~~~~ly~~~~~---~~~l~~yd~~~~~W~~v~~~~~~-~~~~~~~~-~~---g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+.++.++..|-+ ...+-.||++.-+ +-..+..+ ..+..+.- +| +-||+.|.+...|-.|++...
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~--eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLE--EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccCceeeeccccccccceeccCccccc--CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 345555444321 2246667775431 10111111 12222222 32 448888877788888888754
No 308
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=24.06 E-value=8.4e+02 Score=25.50 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=58.6
Q ss_pred eEEEEECCEEEEEeeeCCeEEEEECCCC----ceeecccccccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCCCCce
Q 016552 246 IDAVGWKGKLCLVNVKGAEGAVYDVVAN----TWDDMREGMVRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEVMDDW 318 (387)
Q Consensus 246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~----~W~~~~~~~~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~~~~W 318 (387)
+.++..|+++.+....+.-+.+|+..++ .|..+-. +|.+. ...+.|...|+.++.+.+||.+.+.=
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He-------~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE-------APVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC-------CCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 4455566665555555567888998887 3543222 22222 22446777777888999999877633
Q ss_pred eEccccccccCceEEE-EeCC---eEEEEecCCCeEEEEeccCC
Q 016552 319 KEVVKSDLLKGARHAA-AGGG---RVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~-~~~g---~i~v~gg~~~~i~~~d~~~~ 358 (387)
.. .+....+...+. .+.. .++..|+....+.+||...+
T Consensus 140 th--~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 140 TH--SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred EE--EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 22 111222222222 2222 24456566788899998854
No 309
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.98 E-value=6.8e+02 Score=24.04 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=57.9
Q ss_pred ECCEEEEEeeeCCeEEEEECCCC-ceeecccccccCC----CCcEEEEeCCeEEEEeC--CCCeEEEEeCCCCceeEccc
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGW----RGPVAAMDEEVLYGIDE--NSCTLSRYDEVMDDWKEVVK 323 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~----~~~~~~~~~~~ly~~~~--~~~~l~~yd~~~~~W~~v~~ 323 (387)
-||++.+--+.+ ...+.|..++ .|....+ ....+ +..+....+..||+... ..+.+..+|.....|..+..
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 367654433333 6777777766 3444432 11111 11111111235666653 34567778887777753332
Q ss_pred cc----cccC-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 324 SD----LLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 324 ~~----~~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
.. .... ..-.|..+|+...+|...+.+.+|+..+-
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 21 1211 23345568999999888888999988843
No 310
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=22.90 E-value=3.7e+02 Score=24.02 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred CeEEEEeCCCCeEEEEeCCCCceeEccccc--------cccCceEEEEeCCeEEEEecCCCeEEEEe
Q 016552 296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSD--------LLKGARHAAAGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~--------~~~~~~~~~~~~g~i~v~gg~~~~i~~~d 354 (387)
|+||++...+..|..+|.+.+.-..+.-.. ..+.-..++.-+|.|||+ ...+-.++|.
T Consensus 183 ~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f~ 248 (248)
T PF06977_consen 183 GHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRFE 248 (248)
T ss_dssp TEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEEE
T ss_pred CeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEeC
No 311
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.46 E-value=8e+02 Score=24.68 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=46.2
Q ss_pred EEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEe-CC---eEEEEeCCCCeEEEEeCCCC----ceeEcccc
Q 016552 255 LCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMD-EE---VLYGIDENSCTLSRYDEVMD----DWKEVVKS 324 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~-~~---~ly~~~~~~~~l~~yd~~~~----~W~~v~~~ 324 (387)
+.+.|-...+++.|+...+ +|..... +..+...++. +. .||-.+ .+..+..+++... .|......
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~----~h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTD----KHYGNVNEILDAQRLGCIYSVG-ADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecC----CCCCcceeeecccccCceEecC-CceeEEEEecccceeeeeeccCCCc
Confidence 4445544478999999887 4554322 2222332322 33 444443 2556777787665 34433221
Q ss_pred ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 325 ~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
+ ..-+..-++++.+++ +..|-+||++++
T Consensus 147 ~----~sl~is~D~~~l~~a--s~~ik~~~~~~k 174 (541)
T KOG4547|consen 147 V----SSLCISPDGKILLTA--SRQIKVLDIETK 174 (541)
T ss_pred c----ceEEEcCCCCEEEec--cceEEEEEccCc
Confidence 1 122334455555553 234555555544
No 312
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.42 E-value=9.1e+02 Score=25.31 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=57.1
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeeccccc---cc---CC--CCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeE-
Q 016552 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGM---VR---GW--RGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKE- 320 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~---~~---~~--~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~- 320 (387)
-||+.-++|-+...+..|+....+-..--... .. +. +|-..... -++|.|. .++.+|.+||.....-..
T Consensus 461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhh
Confidence 37887788877777888888877543222100 00 11 11111111 1234444 346689999985542221
Q ss_pred ccccccccC-ceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 321 VVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 321 v~~~~~~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
+........ ..+....+|+-+|.+.....+++|+..
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 111111111 222334488888888888999999974
No 313
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.14 E-value=7.1e+02 Score=23.95 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=38.1
Q ss_pred CC-EEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc
Q 016552 252 KG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD 325 (387)
Q Consensus 252 ~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~ 325 (387)
|| +|++.+... ..++..|+++++=..+.........+..++..+..+|.+. ....|+..|+++.+=+.|-..|
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE--
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEECC
Confidence 55 444433333 6789999999988888764444444555555566766553 2357888998887655555444
No 314
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.85 E-value=7.1e+02 Score=23.85 Aligned_cols=94 Identities=9% Similarity=-0.013 Sum_probs=44.9
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC--cEE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG--PVA 291 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~--~~~ 291 (387)
..+..||+.+.. +.+..++..-.+-. +.+-..+|.+.+++..-..+-.||..++.---. ...+..+ .++
T Consensus 226 hqvR~YDt~~qR-----RPV~~fd~~E~~is-~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~---~~kg~tGsirsi 296 (412)
T KOG3881|consen 226 HQVRLYDTRHQR-----RPVAQFDFLENPIS-STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC---GLKGITGSIRSI 296 (412)
T ss_pred eeEEEecCcccC-----cceeEeccccCcce-eeeecCCCcEEEEecccchhheecccCceeecc---ccCCccCCcceE
Confidence 467889998776 22222221111100 222233444333333334788899877653211 1112221 223
Q ss_pred EEeCC-eEEEEeCCCCeEEEEeCCCC
Q 016552 292 AMDEE-VLYGIDENSCTLSRYDEVMD 316 (387)
Q Consensus 292 ~~~~~-~ly~~~~~~~~l~~yd~~~~ 316 (387)
..+.+ .+....|-+..+.+||.++.
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccc
Confidence 33333 34444444556888999884
No 315
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=21.77 E-value=2.1e+02 Score=17.64 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=19.6
Q ss_pred eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552 331 RHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 331 ~~~~~~~g~i~v~gg~~~~i~~~d~~~~ 358 (387)
..+...++.+||. .....+.++|++.-
T Consensus 5 ~~v~v~g~yaYva-~~~~Gl~IvDISnP 31 (42)
T PF08309_consen 5 RDVAVSGNYAYVA-DGNNGLVIVDISNP 31 (42)
T ss_pred EEEEEECCEEEEE-eCCCCEEEEECCCC
Confidence 3456677888888 44567999999953
No 316
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=21.74 E-value=1.7e+02 Score=29.09 Aligned_cols=60 Identities=8% Similarity=-0.010 Sum_probs=33.4
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCc--eEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
+|+....-..+|.|.+||..+.+- +..+...-+. +++-..|||.+++||..+-+.||-+.
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eL--lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQEL--LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHH--HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 343333333578888888876632 2222233333 33345689999998865544444433
No 317
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=21.73 E-value=2.5e+02 Score=28.49 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=40.1
Q ss_pred eEEEEeCCCCeEEEEeCCCCceeEccccccc--cCceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552 297 VLYGIDENSCTLSRYDEVMDDWKEVVKSDLL--KGARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 297 ~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~--~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~ 357 (387)
-+|+++...|.+..||.-.+.=..+...+.- ..........|+++.+|..++.+.+|++..
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3566655578899999866644433332211 112334456699999998899999999973
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=20.83 E-value=7.9e+02 Score=23.98 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=51.7
Q ss_pred ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcE
Q 016552 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..+.++|..+.+ =..+...... ....+-.-||+ |++....+ ..++.||++..+=+.+....... ..+.
T Consensus 262 ~~iy~~dl~~~~----~~~Lt~~~gi----~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~ 332 (425)
T COG0823 262 PDIYLMDLDGKN----LPRLTNGFGI----NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPV 332 (425)
T ss_pred ccEEEEcCCCCc----ceecccCCcc----ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCcc
Confidence 477888988777 2223322211 11223333554 55554433 67889998877544443211111 1222
Q ss_pred EEEeCCeEEEEeCC-CC--eEEEEeCCCCc-eeEccc
Q 016552 291 AAMDEEVLYGIDEN-SC--TLSRYDEVMDD-WKEVVK 323 (387)
Q Consensus 291 ~~~~~~~ly~~~~~-~~--~l~~yd~~~~~-W~~v~~ 323 (387)
.-. +|+.+++... .| .+..+|+.++. |+.+..
T Consensus 333 ~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 333 WSP-DGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCC-CCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 223 3444444332 23 38888887776 877664
No 319
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=20.46 E-value=6.3e+02 Score=22.70 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=75.8
Q ss_pred cCCceeeCCCCCC-----CCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccc
Q 016552 172 ICRTWTFGPELVT-----PRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA 245 (387)
Q Consensus 172 ~t~~W~~l~~~p~-----~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~ 245 (387)
....|+..+||.. |-.+.... .-.+.|+.+||-. .+...|.++++ -...-.=... + .
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~---------~~y~~dlE~G~----i~r~~rGHtD-Y---v 159 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG---------VIYQVDLEDGR----IQREYRGHTD-Y---V 159 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe---------EEEEEEecCCE----EEEEEcCCcc-e---e
Confidence 3456888888764 22222222 2357888888631 55777888888 4433210000 1 1
Q ss_pred eEEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccc------ccccCCCC--cEEEEeCCeEEEEeCCCCeEEEEeCCC
Q 016552 246 IDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMRE------GMVRGWRG--PVAAMDEEVLYGIDENSCTLSRYDEVM 315 (387)
Q Consensus 246 ~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~------~~~~~~~~--~~~~~~~~~ly~~~~~~~~l~~yd~~~ 315 (387)
|+.+. -++.| +.|+.+..+.+.|.++.+=..+-. .....+.. .++++ + .=+++.|....+-.|+...
T Consensus 160 H~vv~R~~~~qi-lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-~-edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 160 HSVVGRNANGQI-LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-N-EDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred eeeeecccCcce-eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-c-CceEEecCCCceeEEeccC
Confidence 22222 13343 445555788889988886544321 01111111 22222 2 2344444455678888766
Q ss_pred CceeEccccccccCceEEEEeCCeEEEEecCC
Q 016552 316 DDWKEVVKSDLLKGARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 316 ~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~ 347 (387)
.+=+.+-+.| .....+...+..++++|.+
T Consensus 237 se~t~vfpip---a~v~~v~F~~d~vl~~G~g 265 (325)
T KOG0649|consen 237 SESTCVFPIP---ARVHLVDFVDDCVLIGGEG 265 (325)
T ss_pred CCceEEEecc---cceeEeeeecceEEEeccc
Confidence 6544443322 2333455445555555544
No 320
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=20.37 E-value=8e+02 Score=23.83 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=56.9
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCC--CcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEcccc
Q 016552 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR--GPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKS 324 (387)
Q Consensus 248 ~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~--~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~ 324 (387)
+.-.||.+...||.+....+.|+.++.-...- .+.. ..++. .-+|.....|+.++.+.+||..... .+..+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L----~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--~ly~i 383 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL----AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--ELYTI 383 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEe----cccccceeeEeECCCceEEeecCCCCcEEEeeecccc--cceec
Confidence 45568999988887766677787776543221 1111 12222 2367777777778889999987652 24444
Q ss_pred ccccC---ceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552 325 DLLKG---ARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 325 ~~~~~---~~~~~~~~g~i~v~gg~~~~i~~~d~~ 356 (387)
|.... ..+.-...|+.++.++..+.+-+|...
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 43222 111111245555555544444444444
No 321
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.03 E-value=7.6e+02 Score=23.48 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCceeeEEeecCCCCCCCCCCeEEEEEeCCCC---CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecc
Q 016552 79 FPPFLSLYALFSPKSNSSSTPIHLFTFDPVSS---TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAAT 155 (387)
Q Consensus 79 f~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~---~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~ 155 (387)
|++...+.+... ....+.+||..++ +|.+.-.-.. +.....+...|++-.
T Consensus 116 ~hp~~~~v~~as-------~d~tikv~D~~tg~~e~~LrGHt~sv-------------------~di~~~a~Gk~l~tc- 168 (406)
T KOG0295|consen 116 FHPSEALVVSAS-------EDATIKVFDTETGELERSLRGHTDSV-------------------FDISFDASGKYLATC- 168 (406)
T ss_pred eccCceEEEEec-------CCceEEEEEccchhhhhhhhccccce-------------------eEEEEecCccEEEec-
Q ss_pred cCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc
Q 016552 156 THNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT 233 (387)
Q Consensus 156 ~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~ 233 (387)
...+. +..+|..+- .+.+..+..+-...+++.. .|.-++-.+.+. ++..+|..++- -...
T Consensus 169 ----SsDl~-~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~--------tik~We~~tg~----cv~t 230 (406)
T KOG0295|consen 169 ----SSDLS-AKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN--------TIKAWECDTGY----CVKT 230 (406)
T ss_pred ----CCccc-hhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeeccccc--------ceeEEecccce----eEEe
Q ss_pred CCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC----------------ceeecccccccCCCCcEEEEeCCe
Q 016552 234 GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN----------------TWDDMREGMVRGWRGPVAAMDEEV 297 (387)
Q Consensus 234 ~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~----------------~W~~~~~~~~~~~~~~~~~~~~~~ 297 (387)
-+-+..... ...+.-||.|...++.+..+.+.-.+++ .|..... .......+....++.
T Consensus 231 ~~~h~ewvr---~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~--~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 231 FPGHSEWVR---MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS--YPSISEATGSTNGGQ 305 (406)
T ss_pred ccCchHhEE---EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc--CcchhhccCCCCCcc
Q ss_pred EEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeC--CeEEEEecCCCeEEEEeccCCCCCCceEE--eCCCCc
Q 016552 298 LYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGG--GRVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGF 372 (387)
Q Consensus 298 ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~--g~i~v~gg~~~~i~~~d~~~~~~~~~W~~--~~p~~~ 372 (387)
+...+..++.|.+||..+. .-+-.+........-+++. |+-++-..++..+-+||.++. +-.. ++++.|
T Consensus 306 ~l~s~SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~----~cmk~~~ah~hf 378 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL----QCMKTLEAHEHF 378 (406)
T ss_pred EEEeecccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc----eeeeccCCCcce
Done!