BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016555
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
+K ER++ NR +A +SR RK L KV +L +N+ L S N L E +L+Q+
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 59
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
KR R++ N+ +A +SR R++ + L + D L DE ++L++EI L + EKL
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 55
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+KR R++ N+ +A +SR R++ + L + D L DE ++L++EI L + EKL
Sbjct: 1 MKRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
K ER++ NR +A +SR RK L KV +L +N+ L S N L E +L+Q+
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
KR R++ N+ +A + R R++ + L + D L DE ++L++EI L + EKL
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
KRE R NRE+AR SR +K+ + L +V L ++N +L E+ L +
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338
KR + + NR +A RSR +++ + L +K + L N L+SE+ L +L+Q
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+K ER++ NR +A +SR RK L KV +L +N+ L S N L E +L
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 56
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
+++ LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L +
Sbjct: 1 MKDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 53
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L +
Sbjct: 6 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 52
>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
Length = 107
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRK-------VDSLIDENASLKSEINQLSEN 332
+LK+ RR NR A R+++ + EEL ++ V+ L ENAS K E++ L
Sbjct: 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASXKLELDALRSK 94
Query: 333 SEKLR 337
E L+
Sbjct: 95 YEALQ 99
>pdb|2E42|A Chain A, Crystal Structure Of CEBPBETA BZIP HOMODIMER V285A MUTANT
Bound To A High Affinity Dna Fragment
pdb|2E42|B Chain B, Crystal Structure Of CEBPBETA BZIP HOMODIMER V285A MUTANT
Bound To A High Affinity Dna Fragment
Length = 78
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+E +++RER N +AR+SR + + E KV L EN L+ ++ QLS L
Sbjct: 14 DEYKIRRER----NNIAARKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
Query: 337 R 337
R
Sbjct: 70 R 70
>pdb|1CI6|B Chain B, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
E +++RER N + R+SR + + E KV L EN L+ ++ QLS LR
Sbjct: 2 EYKMRRER----NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 57
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L +
Sbjct: 12 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58
>pdb|1NWQ|A Chain A, Crystal Structure Of CEBPALPHA-Dna Complex
pdb|1NWQ|C Chain C, Crystal Structure Of CEBPALPHA-Dna Complex
Length = 62
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
NE ++RER N + R+SR + + E +KV L +N L+ + QLS + L
Sbjct: 5 NEYRVRRER----NNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTL 60
Query: 337 R 337
R
Sbjct: 61 R 61
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L +
Sbjct: 11 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 57
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
Length = 97
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE--KLRQ 338
LK++RR NR A+ R ++ + L + LI + LK E+++L+ + K++
Sbjct: 30 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 89
Query: 339 ENAA 342
E A
Sbjct: 90 EKLA 93
>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 90
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE--KLRQ 338
LK++RR NR A+ R ++ + L + LI + LK E+++L+ + K++
Sbjct: 26 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85
Query: 339 ENAA 342
E A
Sbjct: 86 EKLA 89
>pdb|1IO4|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1IO4|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1H88|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H88|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H8A|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex3
pdb|1H8A|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex3
pdb|1GU4|A Chain A, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
High Affinity Dna Fragment
pdb|1GU4|B Chain B, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
High Affinity Dna Fragment
pdb|1GU5|A Chain A, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Mim-1 Promoter
pdb|1GU5|B Chain B, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Mim-1 Promoter
pdb|1GTW|A Chain A, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Tom-1a Promoter
pdb|1GTW|B Chain B, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Tom-1a Promoter
Length = 78
Score = 32.0 bits (71), Expect = 0.62, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+E +++RER N + R+SR + + E KV L EN L+ ++ QLS L
Sbjct: 14 DEYKIRRER----NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
Query: 337 R 337
R
Sbjct: 70 R 70
>pdb|2E43|A Chain A, Crystal Structure Of CEBPBETA BZIP HOMODIMER K269A MUTANT
Bound To A High Affinity Dna Fragment
pdb|2E43|B Chain B, Crystal Structure Of CEBPBETA BZIP HOMODIMER K269A MUTANT
Bound To A High Affinity Dna Fragment
Length = 78
Score = 32.0 bits (71), Expect = 0.63, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+E +++RER N + R+SR + + E KV L EN L+ ++ QLS L
Sbjct: 14 DEYKIRRER----NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
Query: 337 R 337
R
Sbjct: 70 R 70
>pdb|1H89|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex2
pdb|1H89|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 64
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
E +++RER N + R+SR + + E KV L EN L+ ++ QLS LR
Sbjct: 1 EYKIRRER----NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 56
>pdb|1HJB|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|E Chain E, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
Length = 87
Score = 31.6 bits (70), Expect = 0.78, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+E +++RER N + R+SR + + E KV L EN L+ ++ QLS L
Sbjct: 14 DEYKIRRER----NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
Query: 337 R 337
R
Sbjct: 70 R 70
>pdb|3SSU|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
pdb|3SSU|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
Length = 93
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 296 RSRLRKQAEAE--ELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
+SRL E E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 47 KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>pdb|3S4R|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT WITH A
STABILIZING Mutation
pdb|3S4R|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT WITH A
STABILIZING Mutation
Length = 93
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 296 RSRLRKQAEAE--ELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
+SRL E E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 47 KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>pdb|1GD2|E Chain E, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|F Chain F, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|G Chain G, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|H Chain H, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|I Chain I, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|J Chain J, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
Length = 70
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335
+N + +RK NR + R R RK+ + L +V +L + ++S E +QL + +
Sbjct: 2 KNSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61
Query: 336 LRQE 339
L +E
Sbjct: 62 LEEE 65
>pdb|3SWK|A Chain A, Crystal Structure Of Vimentin Coil1b Fragment
pdb|3SWK|B Chain B, Crystal Structure Of Vimentin Coil1b Fragment
Length = 86
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335
QN + L +ER+ R S + L AE EE ++ + L +++ S+ SE+ + EK
Sbjct: 998 QNNK-LTKERKLLEERVSDLTTNL---AEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 336 LRQE 339
RQE
Sbjct: 1054 SRQE 1057
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,276,496
Number of Sequences: 62578
Number of extensions: 377536
Number of successful extensions: 812
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 48
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)