Query 016555
Match_columns 387
No_of_seqs 234 out of 1083
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 2E-70 4.3E-75 502.7 15.6 179 1-180 1-189 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 1.2E-13 2.6E-18 106.8 9.5 64 278-341 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 5.5E-13 1.2E-17 103.3 9.1 62 280-341 3-64 (65)
4 KOG4005 Transcription factor X 99.4 2.5E-12 5.5E-17 122.5 9.9 91 280-370 67-157 (292)
5 KOG3584 cAMP response element 99.4 1.7E-12 3.7E-17 126.5 8.7 64 271-334 280-343 (348)
6 KOG0709 CREB/ATF family transc 99.3 1.8E-12 4E-17 132.9 5.6 96 277-379 246-341 (472)
7 KOG4343 bZIP transcription fac 99.2 5.6E-11 1.2E-15 123.5 10.4 69 276-344 275-343 (655)
8 PF07716 bZIP_2: Basic region 99.2 1.7E-10 3.6E-15 86.8 8.9 52 280-332 3-54 (54)
9 KOG0837 Transcriptional activa 98.7 4.5E-08 9.8E-13 94.8 9.4 75 271-352 195-269 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 2.6E-09 5.7E-14 88.5 -6.7 68 276-343 24-91 (92)
11 KOG4571 Activating transcripti 98.3 4.3E-06 9.2E-11 82.4 10.2 53 284-336 229-281 (294)
12 KOG3119 Basic region leucine z 98.2 7.2E-06 1.6E-10 80.2 8.7 55 284-338 196-250 (269)
13 KOG4196 bZIP transcription fac 97.8 0.00024 5.2E-09 62.9 10.1 67 279-352 50-116 (135)
14 PF07777 MFMR: G-box binding p 97.4 0.0017 3.7E-08 60.9 10.5 65 31-107 22-93 (189)
15 KOG3863 bZIP transcription fac 97.3 0.00037 8E-09 74.8 6.6 74 282-362 490-563 (604)
16 PF06156 DUF972: Protein of un 97.0 0.0034 7.3E-08 54.1 7.9 50 303-352 8-57 (107)
17 PRK10884 SH3 domain-containing 96.9 0.012 2.6E-07 56.0 11.9 50 300-349 122-171 (206)
18 PRK13169 DNA replication intia 96.8 0.0053 1.1E-07 53.2 7.9 48 303-350 8-55 (110)
19 PF06005 DUF904: Protein of un 96.7 0.015 3.3E-07 46.8 8.8 49 304-352 19-67 (72)
20 PF06005 DUF904: Protein of un 96.5 0.021 4.6E-07 45.9 8.7 49 303-351 4-52 (72)
21 TIGR02449 conserved hypothetic 96.4 0.027 5.8E-07 44.7 8.4 53 303-355 7-59 (65)
22 PF08614 ATG16: Autophagy prot 96.1 0.13 2.8E-06 47.9 12.7 75 282-356 116-190 (194)
23 PF10224 DUF2205: Predicted co 96.1 0.038 8.2E-07 45.5 8.0 50 303-352 16-65 (80)
24 COG4467 Regulator of replicati 95.8 0.036 7.9E-07 48.0 7.1 47 303-349 8-54 (114)
25 COG3074 Uncharacterized protei 95.8 0.057 1.2E-06 43.6 7.6 45 303-347 18-62 (79)
26 COG3074 Uncharacterized protei 95.8 0.06 1.3E-06 43.5 7.7 54 300-353 22-75 (79)
27 PF02183 HALZ: Homeobox associ 95.8 0.029 6.4E-07 41.3 5.5 39 314-352 2-40 (45)
28 TIGR02894 DNA_bind_RsfA transc 95.7 0.042 9.1E-07 50.6 7.6 39 312-350 99-137 (161)
29 TIGR02449 conserved hypothetic 95.6 0.067 1.5E-06 42.5 7.5 49 305-353 2-50 (65)
30 KOG1414 Transcriptional activa 95.6 0.00048 1E-08 70.8 -5.9 64 274-337 146-213 (395)
31 PRK10884 SH3 domain-containing 95.6 0.22 4.9E-06 47.4 12.3 55 301-355 116-170 (206)
32 PRK13729 conjugal transfer pil 95.5 0.067 1.5E-06 56.6 9.1 48 303-350 76-123 (475)
33 PRK15422 septal ring assembly 95.4 0.094 2E-06 43.1 7.8 44 303-346 18-61 (79)
34 PRK15422 septal ring assembly 95.4 0.1 2.2E-06 42.8 7.9 52 302-353 24-75 (79)
35 PF13747 DUF4164: Domain of un 95.3 0.46 1E-05 39.6 11.7 76 277-352 6-81 (89)
36 COG4026 Uncharacterized protei 95.2 0.12 2.6E-06 50.2 9.2 55 301-355 140-194 (290)
37 PF02183 HALZ: Homeobox associ 95.1 0.077 1.7E-06 39.1 6.0 42 307-348 2-43 (45)
38 PF11559 ADIP: Afadin- and alp 95.0 0.49 1.1E-05 42.1 11.9 73 281-353 44-116 (151)
39 PF04102 SlyX: SlyX; InterPro 94.8 0.15 3.2E-06 40.4 7.2 50 302-351 3-52 (69)
40 PF04880 NUDE_C: NUDE protein, 94.7 0.047 1E-06 50.5 4.8 46 305-354 2-47 (166)
41 KOG4343 bZIP transcription fac 94.7 0.098 2.1E-06 56.0 7.6 83 270-363 266-348 (655)
42 KOG4005 Transcription factor X 94.5 0.46 1E-05 46.5 11.1 51 303-353 97-147 (292)
43 PRK11637 AmiB activator; Provi 94.4 0.58 1.3E-05 48.4 12.5 59 300-358 72-130 (428)
44 TIGR00219 mreC rod shape-deter 94.4 0.094 2E-06 51.9 6.4 40 311-350 67-110 (283)
45 KOG3119 Basic region leucine z 94.2 0.3 6.5E-06 48.1 9.5 60 297-356 195-254 (269)
46 PRK00295 hypothetical protein; 94.2 0.35 7.7E-06 38.4 8.0 49 303-351 5-53 (68)
47 PRK04325 hypothetical protein; 94.1 0.35 7.5E-06 39.0 8.0 49 303-351 9-57 (74)
48 KOG1029 Endocytic adaptor prot 94.1 0.46 1E-05 53.1 11.4 34 328-361 434-467 (1118)
49 KOG1962 B-cell receptor-associ 94.1 0.25 5.5E-06 47.5 8.3 49 301-349 163-211 (216)
50 PRK02119 hypothetical protein; 94.0 0.35 7.5E-06 38.9 7.8 50 302-351 8-57 (73)
51 PRK02793 phi X174 lysis protei 94.0 0.35 7.7E-06 38.8 7.9 49 303-351 8-56 (72)
52 PF10473 CENP-F_leu_zip: Leuci 94.0 0.91 2E-05 41.0 11.3 67 286-352 35-101 (140)
53 PRK00736 hypothetical protein; 94.0 0.37 8.1E-06 38.2 7.9 49 303-351 5-53 (68)
54 PRK04406 hypothetical protein; 93.8 0.43 9.2E-06 38.7 8.0 49 303-351 11-59 (75)
55 PRK11637 AmiB activator; Provi 93.5 1 2.3E-05 46.5 12.4 53 300-352 79-131 (428)
56 KOG4196 bZIP transcription fac 93.4 0.76 1.6E-05 41.2 9.5 39 320-358 77-115 (135)
57 PRK13922 rod shape-determining 93.3 0.52 1.1E-05 45.8 9.3 41 310-350 69-112 (276)
58 PRK00846 hypothetical protein; 93.1 0.6 1.3E-05 38.3 7.9 51 302-352 12-62 (77)
59 PF06156 DUF972: Protein of un 93.1 0.5 1.1E-05 40.8 7.8 45 308-352 6-50 (107)
60 TIGR03752 conj_TIGR03752 integ 93.1 0.36 7.8E-06 51.2 8.3 30 318-347 110-139 (472)
61 smart00338 BRLZ basic region l 92.9 0.9 2E-05 35.0 8.4 40 309-348 25-64 (65)
62 PF09726 Macoilin: Transmembra 92.8 0.77 1.7E-05 51.0 10.7 40 306-345 541-580 (697)
63 KOG1414 Transcriptional activa 92.7 0.022 4.9E-07 58.7 -1.1 40 284-323 287-326 (395)
64 PF12718 Tropomyosin_1: Tropom 92.7 0.69 1.5E-05 41.6 8.5 49 303-351 14-62 (143)
65 PF07106 TBPIP: Tat binding pr 92.5 0.67 1.4E-05 42.0 8.3 52 301-352 84-137 (169)
66 PF08172 CASP_C: CASP C termin 92.5 0.51 1.1E-05 46.2 8.0 43 310-352 93-135 (248)
67 PF14197 Cep57_CLD_2: Centroso 92.5 1 2.2E-05 36.0 8.3 48 303-350 12-66 (69)
68 PF11932 DUF3450: Protein of u 92.4 2.3 5E-05 41.0 12.3 47 299-345 52-98 (251)
69 PF11932 DUF3450: Protein of u 92.3 2.4 5.3E-05 40.8 12.2 49 303-351 49-97 (251)
70 COG2433 Uncharacterized conser 92.2 0.58 1.3E-05 51.0 8.6 46 303-348 422-467 (652)
71 KOG0982 Centrosomal protein Nu 92.2 1.5 3.3E-05 46.2 11.2 51 301-351 295-345 (502)
72 PF13851 GAS: Growth-arrest sp 92.1 3.1 6.7E-05 39.3 12.5 60 278-337 68-127 (201)
73 PF07888 CALCOCO1: Calcium bin 92.1 2.1 4.6E-05 46.4 12.6 58 286-343 154-211 (546)
74 PRK00888 ftsB cell division pr 92.1 0.59 1.3E-05 40.0 6.9 32 300-331 31-62 (105)
75 PF00170 bZIP_1: bZIP transcri 92.1 1.9 4.1E-05 33.1 9.1 37 310-346 26-62 (64)
76 KOG3650 Predicted coiled-coil 91.8 0.86 1.9E-05 39.3 7.5 46 308-353 61-106 (120)
77 KOG1029 Endocytic adaptor prot 91.7 1.5 3.3E-05 49.2 11.1 17 336-352 435-451 (1118)
78 COG3883 Uncharacterized protei 91.7 0.46 1E-05 47.1 6.6 44 294-337 50-93 (265)
79 COG4942 Membrane-bound metallo 91.6 2.3 4.9E-05 44.8 11.9 73 282-354 38-110 (420)
80 PRK09039 hypothetical protein; 91.6 2.5 5.4E-05 43.0 12.0 26 312-337 139-164 (343)
81 KOG2391 Vacuolar sorting prote 91.6 3.5 7.7E-05 42.3 12.9 64 277-349 215-278 (365)
82 KOG3335 Predicted coiled-coil 91.5 0.26 5.6E-06 46.1 4.3 42 283-330 92-133 (181)
83 PRK00888 ftsB cell division pr 91.4 0.69 1.5E-05 39.6 6.6 44 304-347 28-71 (105)
84 PF10805 DUF2730: Protein of u 91.4 1.1 2.3E-05 38.3 7.8 48 305-352 44-93 (106)
85 COG1579 Zn-ribbon protein, pos 91.4 2.1 4.6E-05 41.9 10.7 48 303-350 89-136 (239)
86 PHA02562 46 endonuclease subun 91.4 2.1 4.6E-05 45.0 11.6 13 139-151 28-40 (562)
87 KOG2236 Uncharacterized conser 91.3 0.31 6.7E-06 51.4 5.2 30 47-85 424-455 (483)
88 PRK02119 hypothetical protein; 91.2 1.5 3.2E-05 35.4 8.0 55 304-358 3-57 (73)
89 PF08172 CASP_C: CASP C termin 91.2 0.81 1.7E-05 44.8 7.7 48 283-331 88-135 (248)
90 COG1579 Zn-ribbon protein, pos 91.2 3.5 7.6E-05 40.4 12.0 68 283-350 32-108 (239)
91 TIGR02894 DNA_bind_RsfA transc 91.1 1 2.3E-05 41.6 7.8 47 305-351 99-145 (161)
92 PF06785 UPF0242: Uncharacteri 91.0 2.3 5.1E-05 43.6 10.9 56 298-353 122-177 (401)
93 PF11559 ADIP: Afadin- and alp 90.9 5.8 0.00013 35.2 12.4 45 304-348 74-118 (151)
94 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.9 4.7 0.0001 35.4 11.6 33 318-350 99-131 (132)
95 PRK04406 hypothetical protein; 90.8 1.8 4E-05 35.0 8.2 53 305-357 6-58 (75)
96 PF10186 Atg14: UV radiation r 90.8 4.5 9.7E-05 38.7 12.3 45 301-345 61-105 (302)
97 PRK13169 DNA replication intia 90.7 1.4 2.9E-05 38.4 7.8 9 372-380 99-107 (110)
98 PRK10803 tol-pal system protei 90.7 2 4.3E-05 42.1 10.0 49 304-352 55-103 (263)
99 COG4026 Uncharacterized protei 90.7 1.4 3E-05 43.1 8.5 6 242-247 45-50 (290)
100 KOG4571 Activating transcripti 90.6 1.5 3.2E-05 44.0 9.0 46 306-351 244-289 (294)
101 PF06216 RTBV_P46: Rice tungro 90.5 0.94 2E-05 45.0 7.4 55 303-357 64-118 (389)
102 PF04156 IncA: IncA protein; 90.4 5.9 0.00013 36.2 12.3 44 300-343 127-170 (191)
103 PF04728 LPP: Lipoprotein leuc 90.4 2.9 6.2E-05 32.5 8.4 47 304-350 4-50 (56)
104 KOG0977 Nuclear envelope prote 90.4 2.1 4.5E-05 46.4 10.5 65 294-358 132-196 (546)
105 PF12709 Kinetocho_Slk19: Cent 90.3 1.5 3.3E-05 36.8 7.4 43 301-343 40-82 (87)
106 KOG2391 Vacuolar sorting prote 90.2 1.8 3.9E-05 44.4 9.3 60 297-356 219-278 (365)
107 PF09726 Macoilin: Transmembra 90.2 2.2 4.9E-05 47.4 10.9 6 297-302 543-548 (697)
108 PF08614 ATG16: Autophagy prot 90.2 4.6 9.9E-05 37.6 11.4 52 303-354 130-181 (194)
109 PF08317 Spc7: Spc7 kinetochor 90.2 3.3 7.1E-05 41.6 11.2 44 303-346 209-252 (325)
110 PF12325 TMF_TATA_bd: TATA ele 90.2 1.9 4.2E-05 37.9 8.4 33 301-333 28-60 (120)
111 PF14197 Cep57_CLD_2: Centroso 90.2 1.9 4.2E-05 34.4 7.7 50 304-353 6-62 (69)
112 KOG0250 DNA repair protein RAD 89.9 3.4 7.5E-05 47.8 12.1 58 294-351 370-428 (1074)
113 PF01166 TSC22: TSC-22/dip/bun 89.8 0.42 9.1E-06 37.3 3.4 31 317-347 14-44 (59)
114 KOG1962 B-cell receptor-associ 89.6 2.9 6.2E-05 40.4 9.8 43 308-350 149-191 (216)
115 smart00787 Spc7 Spc7 kinetocho 89.6 5.6 0.00012 40.2 12.3 20 308-327 209-228 (312)
116 PF12711 Kinesin-relat_1: Kine 89.6 1.8 3.9E-05 36.2 7.3 39 314-352 21-65 (86)
117 PF05266 DUF724: Protein of un 89.5 4.4 9.4E-05 38.3 10.8 54 283-336 90-143 (190)
118 PF15058 Speriolin_N: Sperioli 89.5 0.94 2E-05 43.0 6.2 40 305-352 7-46 (200)
119 PF05377 FlaC_arch: Flagella a 89.3 2.2 4.7E-05 33.0 7.0 39 305-343 2-40 (55)
120 PF04111 APG6: Autophagy prote 89.2 5.5 0.00012 40.1 12.0 27 303-329 64-90 (314)
121 KOG0971 Microtubule-associated 89.2 2.7 5.8E-05 48.0 10.4 51 306-356 328-393 (1243)
122 PF05266 DUF724: Protein of un 89.2 6.6 0.00014 37.0 11.8 53 299-351 127-179 (190)
123 PF12329 TMF_DNA_bd: TATA elem 89.2 3.4 7.3E-05 33.3 8.5 53 300-352 9-61 (74)
124 PF09744 Jnk-SapK_ap_N: JNK_SA 89.1 4 8.6E-05 37.6 9.9 43 308-350 94-136 (158)
125 PF13851 GAS: Growth-arrest sp 89.0 8.7 0.00019 36.3 12.4 43 307-349 90-132 (201)
126 PF09738 DUF2051: Double stran 88.9 1.7 3.6E-05 43.9 8.0 73 278-350 88-166 (302)
127 KOG0977 Nuclear envelope prote 88.8 2.8 6.1E-05 45.4 10.0 65 285-349 130-194 (546)
128 PRK02793 phi X174 lysis protei 88.6 3.1 6.8E-05 33.4 7.9 53 306-358 4-56 (72)
129 PF05103 DivIVA: DivIVA protei 88.5 0.24 5.2E-06 42.4 1.6 47 303-349 25-71 (131)
130 PF04728 LPP: Lipoprotein leuc 88.5 3.1 6.7E-05 32.3 7.4 42 310-351 3-44 (56)
131 PF10211 Ax_dynein_light: Axon 88.5 3.8 8.2E-05 38.4 9.6 47 305-351 122-168 (189)
132 PF03962 Mnd1: Mnd1 family; I 88.4 3.4 7.4E-05 38.7 9.2 11 304-314 84-94 (188)
133 PRK04325 hypothetical protein; 88.4 3.2 7E-05 33.4 7.9 55 304-358 3-57 (74)
134 PF07106 TBPIP: Tat binding pr 88.4 1.9 4E-05 39.1 7.3 49 305-353 81-131 (169)
135 PF04102 SlyX: SlyX; InterPro 88.4 3.2 6.9E-05 32.8 7.7 50 308-357 2-51 (69)
136 PF05377 FlaC_arch: Flagella a 88.4 1.8 4E-05 33.4 6.0 42 311-352 1-42 (55)
137 PF04977 DivIC: Septum formati 88.3 1.9 4.2E-05 33.6 6.4 30 300-329 21-50 (80)
138 COG2900 SlyX Uncharacterized p 88.2 3.7 8.1E-05 33.3 8.0 50 303-352 8-57 (72)
139 KOG2264 Exostosin EXT1L [Signa 88.1 2.5 5.4E-05 46.2 9.0 48 303-350 93-140 (907)
140 KOG4797 Transcriptional regula 88.1 2 4.4E-05 37.5 6.9 24 321-344 71-94 (123)
141 PF08317 Spc7: Spc7 kinetochor 88.1 6 0.00013 39.8 11.4 14 339-352 277-290 (325)
142 PF13815 Dzip-like_N: Iguana/D 88.0 1.6 3.5E-05 37.7 6.3 38 314-351 77-114 (118)
143 PF15294 Leu_zip: Leucine zipp 87.9 1.6 3.6E-05 43.5 7.1 45 308-352 130-174 (278)
144 PRK00846 hypothetical protein; 87.8 3.6 7.9E-05 33.7 7.9 53 306-358 9-61 (77)
145 PF08826 DMPK_coil: DMPK coile 87.8 4.1 8.9E-05 32.0 7.8 43 309-351 17-59 (61)
146 PF00038 Filament: Intermediat 87.7 11 0.00025 36.8 12.9 26 304-329 224-249 (312)
147 PF08826 DMPK_coil: DMPK coile 87.6 5.7 0.00012 31.2 8.5 36 303-338 25-60 (61)
148 PF15035 Rootletin: Ciliary ro 87.6 2.8 6.1E-05 39.3 8.1 45 306-350 70-114 (182)
149 PF09789 DUF2353: Uncharacteri 87.3 4.3 9.3E-05 41.4 9.8 46 306-351 68-113 (319)
150 COG2919 Septum formation initi 87.2 12 0.00027 32.3 11.4 66 281-346 20-86 (117)
151 PRK00295 hypothetical protein; 87.2 4 8.7E-05 32.4 7.6 50 308-357 3-52 (68)
152 PRK09039 hypothetical protein; 87.2 8.3 0.00018 39.3 11.9 48 303-350 137-184 (343)
153 PHA02562 46 endonuclease subun 87.1 6.8 0.00015 41.2 11.6 32 308-339 363-394 (562)
154 COG2433 Uncharacterized conser 87.0 3.9 8.4E-05 44.9 9.7 43 288-330 420-463 (652)
155 PF05700 BCAS2: Breast carcino 87.0 9.5 0.00021 36.4 11.5 54 297-351 163-216 (221)
156 PF04156 IncA: IncA protein; 87.0 10 0.00022 34.6 11.4 44 307-350 127-170 (191)
157 PF05529 Bap31: B-cell recepto 87.0 7.3 0.00016 35.9 10.5 39 315-353 152-190 (192)
158 PF04977 DivIC: Septum formati 86.9 2.3 5.1E-05 33.1 6.2 32 305-336 19-50 (80)
159 PF09304 Cortex-I_coil: Cortex 86.7 6.2 0.00013 34.3 9.0 58 284-341 18-75 (107)
160 PF01486 K-box: K-box region; 86.7 9.5 0.00021 31.8 10.1 46 303-348 49-99 (100)
161 PF10211 Ax_dynein_light: Axon 86.7 5.9 0.00013 37.1 9.7 34 300-333 124-157 (189)
162 PF04111 APG6: Autophagy prote 86.6 15 0.00033 37.0 13.2 9 338-346 113-121 (314)
163 PF10146 zf-C4H2: Zinc finger- 86.5 14 0.00029 36.0 12.4 45 309-353 59-103 (230)
164 KOG1103 Predicted coiled-coil 86.5 3.3 7.1E-05 43.0 8.4 65 292-356 227-291 (561)
165 PF07716 bZIP_2: Basic region 86.4 9 0.00019 28.6 8.8 24 320-343 28-51 (54)
166 PF15556 Zwint: ZW10 interacto 86.3 13 0.00028 36.1 11.7 63 287-349 118-180 (252)
167 KOG1318 Helix loop helix trans 86.1 2.7 5.9E-05 44.1 7.8 18 69-86 70-88 (411)
168 PF15397 DUF4618: Domain of un 86.1 9.7 0.00021 37.8 11.3 76 278-355 140-224 (258)
169 PRK13729 conjugal transfer pil 86.1 2.9 6.2E-05 44.7 8.0 51 302-352 82-132 (475)
170 cd07596 BAR_SNX The Bin/Amphip 86.0 12 0.00027 33.7 11.3 53 282-334 110-169 (218)
171 PF07558 Shugoshin_N: Shugoshi 85.9 0.82 1.8E-05 33.7 2.9 35 313-347 10-44 (46)
172 PF07407 Seadorna_VP6: Seadorn 85.9 1.3 2.9E-05 45.2 5.3 17 313-329 42-58 (420)
173 PF07989 Microtub_assoc: Micro 85.9 4.2 9.1E-05 33.0 7.2 28 306-333 3-30 (75)
174 PF04871 Uso1_p115_C: Uso1 / p 85.8 13 0.00029 33.2 11.1 32 321-352 81-112 (136)
175 KOG3248 Transcription factor T 85.8 3.2 6.8E-05 42.7 7.8 105 27-133 72-194 (421)
176 PF09304 Cortex-I_coil: Cortex 85.7 23 0.00051 30.9 12.1 61 289-349 15-76 (107)
177 KOG2264 Exostosin EXT1L [Signa 85.7 9.7 0.00021 41.9 11.8 66 291-356 88-153 (907)
178 PF04849 HAP1_N: HAP1 N-termin 85.7 9.2 0.0002 38.8 11.1 51 303-353 241-291 (306)
179 PF02403 Seryl_tRNA_N: Seryl-t 85.6 4.7 0.0001 33.7 7.7 12 305-316 45-56 (108)
180 PRK10803 tol-pal system protei 85.4 3.8 8.1E-05 40.2 8.1 50 299-348 57-106 (263)
181 PF14662 CCDC155: Coiled-coil 85.3 5.4 0.00012 38.0 8.7 15 304-318 68-82 (193)
182 PF02403 Seryl_tRNA_N: Seryl-t 85.3 12 0.00026 31.2 10.1 13 336-348 72-84 (108)
183 PHA03162 hypothetical protein; 85.3 0.33 7.2E-06 43.4 0.6 28 300-327 10-37 (135)
184 PF10482 CtIP_N: Tumour-suppre 85.2 5.7 0.00012 35.0 8.1 65 294-358 5-69 (120)
185 PF15030 DUF4527: Protein of u 85.2 11 0.00023 37.3 10.9 25 278-302 11-35 (277)
186 PF14645 Chibby: Chibby family 85.2 3 6.5E-05 36.5 6.5 45 303-347 71-115 (116)
187 PHA03155 hypothetical protein; 85.1 2.7 5.9E-05 36.9 6.1 25 304-328 9-33 (115)
188 KOG0249 LAR-interacting protei 85.1 7.7 0.00017 43.5 10.9 43 310-352 216-258 (916)
189 PF14282 FlxA: FlxA-like prote 85.1 4.6 0.0001 34.5 7.5 51 304-354 27-81 (106)
190 COG4467 Regulator of replicati 85.1 4.3 9.3E-05 35.5 7.2 49 308-356 6-54 (114)
191 PRK00736 hypothetical protein; 85.0 6.1 0.00013 31.4 7.6 50 308-357 3-52 (68)
192 PF14662 CCDC155: Coiled-coil 84.9 4.6 9.9E-05 38.5 8.0 41 307-347 99-139 (193)
193 PF08647 BRE1: BRE1 E3 ubiquit 84.8 17 0.00038 30.4 10.7 65 285-349 6-70 (96)
194 COG3883 Uncharacterized protei 84.8 15 0.00033 36.6 11.9 59 300-358 49-107 (265)
195 KOG1318 Helix loop helix trans 84.6 28 0.0006 36.8 14.2 29 305-333 292-320 (411)
196 PF07558 Shugoshin_N: Shugoshi 84.6 1.1 2.3E-05 33.2 2.9 43 283-326 2-44 (46)
197 PF05812 Herpes_BLRF2: Herpesv 84.5 0.88 1.9E-05 40.1 2.9 29 301-329 1-29 (118)
198 KOG0946 ER-Golgi vesicle-tethe 84.4 8.9 0.00019 43.5 11.1 63 286-348 654-716 (970)
199 KOG2077 JNK/SAPK-associated pr 84.4 2.7 5.8E-05 45.9 6.9 52 306-357 325-376 (832)
200 PF07888 CALCOCO1: Calcium bin 84.3 15 0.00033 40.0 12.5 26 304-329 186-211 (546)
201 PF03670 UPF0184: Uncharacteri 84.2 6.7 0.00015 32.7 7.8 48 305-352 28-75 (83)
202 PRK14127 cell division protein 84.1 2.3 5E-05 36.9 5.3 39 303-341 30-68 (109)
203 PF09755 DUF2046: Uncharacteri 84.0 3.7 7.9E-05 41.7 7.4 23 303-325 41-63 (310)
204 PF12808 Mto2_bdg: Micro-tubul 84.0 3.3 7.3E-05 31.6 5.5 47 301-350 2-48 (52)
205 TIGR02231 conserved hypothetic 83.9 17 0.00036 38.7 12.7 43 310-352 131-173 (525)
206 PF10669 Phage_Gp23: Protein g 83.8 11 0.00024 32.6 9.1 48 275-326 48-95 (121)
207 PF12808 Mto2_bdg: Micro-tubul 83.4 3.4 7.5E-05 31.5 5.3 29 303-331 22-50 (52)
208 PRK11546 zraP zinc resistance 83.4 5.4 0.00012 36.3 7.5 53 300-352 58-110 (143)
209 PF05278 PEARLI-4: Arabidopsis 83.3 18 0.00039 36.2 11.7 48 302-349 206-253 (269)
210 PF04849 HAP1_N: HAP1 N-termin 83.2 3.5 7.5E-05 41.8 6.9 32 322-353 218-249 (306)
211 TIGR02231 conserved hypothetic 83.2 13 0.00028 39.5 11.6 48 312-359 126-173 (525)
212 PF00038 Filament: Intermediat 83.1 27 0.00058 34.2 13.0 41 312-352 211-251 (312)
213 TIGR02209 ftsL_broad cell divi 83.1 4.2 9E-05 32.4 6.1 31 300-330 28-58 (85)
214 PF09744 Jnk-SapK_ap_N: JNK_SA 83.1 13 0.00028 34.2 10.0 37 313-349 85-121 (158)
215 PF05667 DUF812: Protein of un 82.9 6.3 0.00014 43.2 9.2 45 304-348 336-380 (594)
216 PF04568 IATP: Mitochondrial A 82.8 6.9 0.00015 33.6 7.6 45 289-333 55-99 (100)
217 PF10226 DUF2216: Uncharacteri 82.8 9.4 0.0002 36.4 9.1 54 278-331 19-76 (195)
218 KOG0933 Structural maintenance 82.8 13 0.00029 43.1 11.8 55 300-354 812-866 (1174)
219 PF03980 Nnf1: Nnf1 ; InterPr 82.7 2 4.3E-05 36.3 4.3 32 300-331 77-108 (109)
220 COG1382 GimC Prefoldin, chaper 82.6 5.8 0.00013 35.1 7.2 37 301-337 68-104 (119)
221 PF05700 BCAS2: Breast carcino 82.5 13 0.00027 35.6 10.1 17 335-351 193-209 (221)
222 PF07047 OPA3: Optic atrophy 3 82.5 2.8 6.1E-05 37.2 5.3 38 280-323 95-132 (134)
223 smart00340 HALZ homeobox assoc 82.4 3 6.4E-05 30.7 4.4 26 327-352 8-33 (44)
224 PRK03918 chromosome segregatio 82.4 14 0.00031 41.1 12.0 15 138-152 23-37 (880)
225 PTZ00454 26S protease regulato 82.2 4.8 0.0001 41.8 7.7 37 308-351 27-63 (398)
226 PF10805 DUF2730: Protein of u 82.1 19 0.00041 30.7 10.1 49 302-350 48-98 (106)
227 KOG0995 Centromere-associated 82.0 8.8 0.00019 41.9 9.7 47 303-349 280-326 (581)
228 smart00340 HALZ homeobox assoc 82.0 3.4 7.4E-05 30.4 4.6 27 304-330 6-32 (44)
229 PF12718 Tropomyosin_1: Tropom 82.0 8.6 0.00019 34.6 8.3 33 300-332 32-64 (143)
230 PRK10361 DNA recombination pro 82.0 18 0.00039 38.9 11.9 23 307-329 64-86 (475)
231 KOG1853 LIS1-interacting prote 81.9 13 0.00027 37.2 9.9 48 301-348 131-181 (333)
232 PF13118 DUF3972: Protein of u 81.8 6.9 0.00015 34.9 7.4 47 304-350 79-125 (126)
233 PF04420 CHD5: CHD5-like prote 81.8 1.5 3.2E-05 40.0 3.4 45 305-349 42-91 (161)
234 PF06785 UPF0242: Uncharacteri 81.7 14 0.0003 38.2 10.4 28 327-354 130-157 (401)
235 PF13815 Dzip-like_N: Iguana/D 81.7 8.3 0.00018 33.3 7.8 42 306-347 76-117 (118)
236 PRK03992 proteasome-activating 81.6 4.8 0.0001 41.3 7.4 46 306-351 4-49 (389)
237 PF10473 CENP-F_leu_zip: Leuci 81.5 34 0.00073 31.0 11.9 9 279-287 10-18 (140)
238 PF01166 TSC22: TSC-22/dip/bun 81.4 2 4.3E-05 33.6 3.4 27 304-330 15-41 (59)
239 PF08537 NBP1: Fungal Nap bind 81.4 21 0.00046 36.5 11.6 25 280-304 120-144 (323)
240 TIGR03545 conserved hypothetic 81.4 5.6 0.00012 43.3 8.1 50 286-335 174-230 (555)
241 KOG0288 WD40 repeat protein Ti 81.3 17 0.00037 38.5 11.1 25 303-327 48-72 (459)
242 PRK14160 heat shock protein Gr 81.3 6.3 0.00014 37.9 7.6 47 303-349 54-100 (211)
243 PF04859 DUF641: Plant protein 81.3 4.6 0.0001 36.2 6.2 35 310-344 94-128 (131)
244 PRK04863 mukB cell division pr 81.2 17 0.00038 43.9 12.6 67 283-349 322-401 (1486)
245 PF11180 DUF2968: Protein of u 81.1 17 0.00037 34.7 10.2 72 280-352 104-175 (192)
246 PF08232 Striatin: Striatin fa 80.9 10 0.00022 33.7 8.3 47 306-352 28-74 (134)
247 TIGR02209 ftsL_broad cell divi 80.5 6.1 0.00013 31.5 6.2 28 322-349 29-56 (85)
248 KOG4001 Axonemal dynein light 80.5 15 0.00033 35.6 9.7 45 291-335 169-217 (259)
249 KOG0709 CREB/ATF family transc 80.5 5.5 0.00012 42.4 7.4 41 312-352 274-314 (472)
250 TIGR00606 rad50 rad50. This fa 80.4 16 0.00034 43.4 12.0 31 307-337 885-915 (1311)
251 TIGR03752 conj_TIGR03752 integ 80.4 5.8 0.00013 42.4 7.6 20 305-324 75-94 (472)
252 PRK05431 seryl-tRNA synthetase 80.3 21 0.00045 37.4 11.6 28 322-349 71-98 (425)
253 PF11365 DUF3166: Protein of u 80.3 7.1 0.00015 33.3 6.7 42 306-347 4-45 (96)
254 TIGR02977 phageshock_pspA phag 80.0 19 0.00042 34.1 10.4 48 303-350 99-146 (219)
255 KOG3433 Protein involved in me 80.0 19 0.00042 34.3 10.0 65 291-355 104-168 (203)
256 PF12709 Kinetocho_Slk19: Cent 80.0 6.1 0.00013 33.2 6.1 51 304-354 28-79 (87)
257 PF12999 PRKCSH-like: Glucosid 79.9 11 0.00023 35.5 8.4 32 299-330 142-173 (176)
258 PRK02224 chromosome segregatio 79.9 18 0.00038 40.6 11.7 43 301-343 507-549 (880)
259 PRK15396 murein lipoprotein; P 79.8 13 0.00028 30.6 7.9 47 304-350 26-72 (78)
260 KOG0249 LAR-interacting protei 79.8 16 0.00036 41.0 10.9 45 301-345 214-258 (916)
261 PF07889 DUF1664: Protein of u 79.7 24 0.00052 31.5 10.1 54 300-353 65-118 (126)
262 KOG0980 Actin-binding protein 79.7 18 0.00038 41.5 11.3 67 286-352 449-515 (980)
263 PF14988 DUF4515: Domain of un 79.7 28 0.0006 33.2 11.3 48 305-352 151-198 (206)
264 PF08232 Striatin: Striatin fa 79.5 13 0.00028 33.2 8.4 61 285-345 14-74 (134)
265 PF04201 TPD52: Tumour protein 79.5 11 0.00023 35.1 8.1 8 318-325 58-65 (162)
266 KOG0978 E3 ubiquitin ligase in 79.4 5.2 0.00011 44.6 7.1 61 294-354 564-624 (698)
267 PF09738 DUF2051: Double stran 79.3 9.3 0.0002 38.6 8.4 55 303-357 112-166 (302)
268 KOG0250 DNA repair protein RAD 79.3 22 0.00047 41.5 12.1 58 300-357 369-427 (1074)
269 KOG0837 Transcriptional activa 79.3 12 0.00025 37.4 8.8 59 294-355 207-265 (279)
270 PHA03161 hypothetical protein; 79.3 14 0.00031 33.9 8.8 59 290-350 43-108 (150)
271 PF07412 Geminin: Geminin; In 79.3 6.4 0.00014 37.7 6.8 28 318-345 126-153 (200)
272 PF04880 NUDE_C: NUDE protein, 79.1 1.6 3.4E-05 40.6 2.7 29 319-348 26-54 (166)
273 PF08961 DUF1875: Domain of un 79.0 0.63 1.4E-05 45.1 0.0 42 302-343 121-162 (243)
274 KOG0804 Cytoplasmic Zn-finger 78.9 22 0.00048 38.0 11.1 42 286-327 368-413 (493)
275 COG1792 MreC Cell shape-determ 78.8 6 0.00013 39.4 6.8 39 314-352 70-111 (284)
276 KOG0288 WD40 repeat protein Ti 78.7 13 0.00028 39.3 9.3 37 303-339 41-77 (459)
277 COG2900 SlyX Uncharacterized p 78.6 19 0.00041 29.3 8.3 54 305-358 3-56 (72)
278 PF15136 UPF0449: Uncharacteri 78.6 10 0.00022 32.5 7.1 41 309-349 56-96 (97)
279 COG1842 PspA Phage shock prote 78.5 44 0.00095 32.4 12.4 53 304-356 93-145 (225)
280 PF11500 Cut12: Spindle pole b 78.4 20 0.00044 33.0 9.5 56 278-333 80-135 (152)
281 PF04012 PspA_IM30: PspA/IM30 78.2 47 0.001 31.1 12.3 43 306-348 101-143 (221)
282 PF09727 CortBP2: Cortactin-bi 78.1 23 0.0005 33.7 10.1 72 281-354 93-178 (192)
283 PTZ00454 26S protease regulato 78.0 8.8 0.00019 39.8 8.0 34 303-336 29-62 (398)
284 PF10146 zf-C4H2: Zinc finger- 77.8 16 0.00034 35.6 9.1 44 303-346 60-103 (230)
285 PRK02224 chromosome segregatio 77.8 22 0.00047 39.9 11.6 8 290-297 627-634 (880)
286 PRK13922 rod shape-determining 77.8 7.9 0.00017 37.6 7.2 23 305-327 71-93 (276)
287 PF12329 TMF_DNA_bd: TATA elem 77.6 10 0.00022 30.5 6.6 40 309-348 32-71 (74)
288 cd07596 BAR_SNX The Bin/Amphip 77.5 47 0.001 29.9 11.8 53 294-346 108-167 (218)
289 PRK11020 hypothetical protein; 77.5 20 0.00044 31.6 8.8 19 312-330 33-51 (118)
290 PF13863 DUF4200: Domain of un 77.4 26 0.00057 29.8 9.6 27 323-349 80-106 (126)
291 PF06632 XRCC4: DNA double-str 77.4 9.1 0.0002 39.3 7.8 7 342-348 198-204 (342)
292 PF14817 HAUS5: HAUS augmin-li 77.3 12 0.00026 41.5 9.1 26 307-332 83-108 (632)
293 PF12999 PRKCSH-like: Glucosid 77.2 19 0.0004 33.9 9.1 18 333-350 155-172 (176)
294 PF15070 GOLGA2L5: Putative go 77.2 23 0.00051 39.1 11.3 71 278-348 97-191 (617)
295 COG1340 Uncharacterized archae 76.8 41 0.00088 34.1 11.9 22 310-331 55-76 (294)
296 PF14282 FlxA: FlxA-like prote 76.8 13 0.00028 31.7 7.4 52 303-354 19-74 (106)
297 PF11544 Spc42p: Spindle pole 76.5 22 0.00049 29.2 8.2 24 321-344 30-53 (76)
298 TIGR03185 DNA_S_dndD DNA sulfu 76.5 31 0.00068 37.8 12.1 41 305-345 423-463 (650)
299 COG1730 GIM5 Predicted prefold 76.4 12 0.00026 34.0 7.5 43 305-347 96-138 (145)
300 PRK14872 rod shape-determining 76.4 11 0.00024 38.7 8.0 38 310-347 57-97 (337)
301 cd07429 Cby_like Chibby, a nuc 76.2 5.5 0.00012 34.7 5.0 27 308-334 77-103 (108)
302 PF05278 PEARLI-4: Arabidopsis 76.2 42 0.00092 33.6 11.8 36 309-344 206-241 (269)
303 PRK10636 putative ABC transpor 76.1 15 0.00032 40.2 9.5 55 303-357 563-624 (638)
304 PRK14161 heat shock protein Gr 76.1 15 0.00032 34.5 8.1 39 308-346 17-55 (178)
305 COG4942 Membrane-bound metallo 76.0 36 0.00077 36.1 11.7 53 298-350 61-113 (420)
306 PRK10698 phage shock protein P 76.0 43 0.00092 32.2 11.5 49 304-352 100-148 (222)
307 KOG2010 Double stranded RNA bi 75.9 11 0.00025 38.7 7.8 48 302-349 153-200 (405)
308 PF10224 DUF2205: Predicted co 75.7 40 0.00087 27.9 9.7 37 303-339 30-66 (80)
309 PF09728 Taxilin: Myosin-like 75.6 43 0.00092 33.8 11.9 17 336-352 133-149 (309)
310 PRK12705 hypothetical protein; 75.5 30 0.00066 37.4 11.4 17 308-324 93-109 (508)
311 PF04999 FtsL: Cell division p 75.4 9.9 0.00021 31.3 6.2 33 318-350 36-68 (97)
312 PF05911 DUF869: Plant protein 75.3 32 0.00069 39.1 11.8 55 303-357 92-167 (769)
313 KOG1924 RhoA GTPase effector D 75.3 9.5 0.00021 43.3 7.6 14 96-109 589-602 (1102)
314 KOG1853 LIS1-interacting prote 75.2 42 0.00092 33.7 11.3 27 305-331 54-80 (333)
315 PF07200 Mod_r: Modifier of ru 75.1 14 0.00031 32.5 7.6 68 284-352 37-106 (150)
316 COG2919 Septum formation initi 75.1 11 0.00024 32.7 6.6 44 310-353 43-86 (117)
317 TIGR01554 major_cap_HK97 phage 75.1 18 0.00039 36.7 9.2 19 307-325 38-56 (378)
318 COG1196 Smc Chromosome segrega 75.1 30 0.00065 40.6 12.1 37 310-346 446-482 (1163)
319 COG4372 Uncharacterized protei 75.0 50 0.0011 35.0 12.3 12 322-333 149-160 (499)
320 KOG0239 Kinesin (KAR3 subfamil 75.0 21 0.00045 39.9 10.2 38 305-342 243-280 (670)
321 PF07407 Seadorna_VP6: Seadorn 74.9 9.7 0.00021 39.2 7.0 13 303-315 46-58 (420)
322 PF02388 FemAB: FemAB family; 74.8 15 0.00033 38.0 8.8 48 303-350 242-292 (406)
323 PF15369 KIAA1328: Uncharacter 74.5 36 0.00078 35.0 10.9 47 286-332 8-62 (328)
324 COG1340 Uncharacterized archae 74.5 56 0.0012 33.2 12.2 45 306-350 44-88 (294)
325 PRK10698 phage shock protein P 74.3 66 0.0014 30.9 12.3 50 309-358 98-147 (222)
326 TIGR03185 DNA_S_dndD DNA sulfu 74.3 18 0.00039 39.6 9.5 38 304-341 210-247 (650)
327 PRK03992 proteasome-activating 74.2 9.6 0.00021 39.1 7.1 42 304-345 9-50 (389)
328 PF09325 Vps5: Vps5 C terminal 74.0 34 0.00073 31.8 10.1 52 285-336 131-189 (236)
329 PF04899 MbeD_MobD: MbeD/MobD 73.9 15 0.00033 29.5 6.6 27 307-333 32-58 (70)
330 PRK06569 F0F1 ATP synthase sub 73.8 62 0.0013 29.8 11.4 44 282-325 41-84 (155)
331 PF10234 Cluap1: Clusterin-ass 73.7 54 0.0012 32.8 11.8 15 338-352 225-239 (267)
332 PRK10361 DNA recombination pro 73.6 52 0.0011 35.4 12.4 49 301-349 65-113 (475)
333 TIGR00414 serS seryl-tRNA synt 73.5 23 0.0005 37.0 9.7 28 322-349 74-101 (418)
334 PF11382 DUF3186: Protein of u 73.3 9.8 0.00021 38.2 6.7 41 303-343 32-72 (308)
335 TIGR01069 mutS2 MutS2 family p 73.3 37 0.00081 38.4 11.9 13 306-318 546-558 (771)
336 PRK13454 F0F1 ATP synthase sub 73.3 75 0.0016 29.4 12.1 42 283-324 63-104 (181)
337 PF13870 DUF4201: Domain of un 73.1 62 0.0013 29.5 11.4 12 315-326 89-100 (177)
338 KOG0243 Kinesin-like protein [ 73.0 41 0.00088 39.4 12.1 26 302-327 447-472 (1041)
339 KOG2893 Zn finger protein [Gen 73.0 14 0.00031 36.7 7.4 55 48-105 140-201 (341)
340 PF15035 Rootletin: Ciliary ro 72.9 22 0.00047 33.4 8.4 46 303-348 74-119 (182)
341 PF04949 Transcrip_act: Transc 72.9 50 0.0011 30.5 10.4 54 277-330 39-97 (159)
342 PRK11147 ABC transporter ATPas 72.8 13 0.00027 40.6 7.9 59 300-358 565-629 (635)
343 KOG4661 Hsp27-ERE-TATA-binding 72.8 31 0.00067 38.2 10.5 8 100-107 449-456 (940)
344 PF06818 Fez1: Fez1; InterPro 72.7 14 0.00031 35.4 7.2 28 301-328 78-105 (202)
345 PF09730 BicD: Microtubule-ass 72.6 29 0.00062 39.2 10.6 38 313-350 79-116 (717)
346 KOG0161 Myosin class II heavy 72.4 28 0.0006 43.3 11.2 66 287-352 1644-1709(1930)
347 PHA02109 hypothetical protein 72.3 10 0.00023 35.9 6.1 29 302-330 192-220 (233)
348 PF05622 HOOK: HOOK protein; 72.3 1.2 2.6E-05 49.2 0.0 57 275-332 296-354 (713)
349 KOG4001 Axonemal dynein light 72.3 31 0.00067 33.5 9.4 25 328-352 232-256 (259)
350 PF06632 XRCC4: DNA double-str 72.3 17 0.00037 37.3 8.2 23 307-329 148-170 (342)
351 KOG4643 Uncharacterized coiled 72.2 34 0.00073 40.0 11.0 45 287-331 502-558 (1195)
352 PF14916 CCDC92: Coiled-coil d 72.1 7.9 0.00017 30.4 4.5 40 304-346 4-43 (60)
353 PF09403 FadA: Adhesion protei 72.1 73 0.0016 28.4 12.5 68 283-352 34-110 (126)
354 PRK14143 heat shock protein Gr 72.1 12 0.00027 36.5 6.9 22 305-326 83-104 (238)
355 KOG0946 ER-Golgi vesicle-tethe 71.9 31 0.00068 39.4 10.6 56 299-354 660-715 (970)
356 PF05600 DUF773: Protein of un 71.8 17 0.00036 39.2 8.4 50 300-349 443-492 (507)
357 PF05837 CENP-H: Centromere pr 71.6 16 0.00034 31.2 6.7 51 308-358 1-51 (106)
358 PF15290 Syntaphilin: Golgi-lo 71.6 19 0.00042 36.3 8.1 20 292-312 79-98 (305)
359 PF15556 Zwint: ZW10 interacto 71.6 65 0.0014 31.4 11.3 66 288-353 112-177 (252)
360 PF10205 KLRAQ: Predicted coil 71.5 25 0.00054 30.4 7.8 43 312-354 28-70 (102)
361 PRK14143 heat shock protein Gr 71.5 21 0.00046 34.9 8.3 15 299-313 91-105 (238)
362 KOG4593 Mitotic checkpoint pro 71.5 26 0.00057 39.2 9.8 65 288-352 483-580 (716)
363 PF08606 Prp19: Prp19/Pso4-lik 71.4 25 0.00054 28.5 7.2 34 304-337 9-42 (70)
364 PF07334 IFP_35_N: Interferon- 71.4 7.7 0.00017 31.8 4.5 24 313-336 3-26 (76)
365 PLN02678 seryl-tRNA synthetase 71.2 29 0.00063 36.9 9.9 60 292-351 36-105 (448)
366 PF04012 PspA_IM30: PspA/IM30 71.2 41 0.00089 31.5 10.0 50 307-356 95-144 (221)
367 KOG0976 Rho/Rac1-interacting s 71.2 42 0.0009 38.6 11.3 20 278-297 101-120 (1265)
368 KOG0483 Transcription factor H 71.2 8.7 0.00019 36.6 5.5 25 324-348 119-143 (198)
369 PF10168 Nup88: Nuclear pore c 70.8 40 0.00087 37.9 11.3 25 305-329 581-605 (717)
370 TIGR02977 phageshock_pspA phag 70.7 92 0.002 29.5 12.3 41 311-351 100-140 (219)
371 PF06210 DUF1003: Protein of u 70.6 20 0.00044 31.0 7.1 46 288-338 56-101 (108)
372 PF13805 Pil1: Eisosome compon 70.6 24 0.00052 35.3 8.6 21 282-302 127-148 (271)
373 PF03670 UPF0184: Uncharacteri 70.4 17 0.00037 30.3 6.3 42 303-344 33-74 (83)
374 PRK14140 heat shock protein Gr 70.4 24 0.00051 33.5 8.2 26 305-330 39-64 (191)
375 cd07429 Cby_like Chibby, a nuc 70.3 11 0.00023 32.9 5.4 7 339-345 94-100 (108)
376 PRK03947 prefoldin subunit alp 70.2 20 0.00044 31.4 7.3 39 306-344 97-135 (140)
377 COG4372 Uncharacterized protei 70.2 74 0.0016 33.8 12.2 43 302-344 136-178 (499)
378 PF14775 NYD-SP28_assoc: Sperm 70.1 34 0.00073 26.6 7.6 37 312-349 22-58 (60)
379 PF05557 MAD: Mitotic checkpoi 70.1 17 0.00038 40.3 8.4 21 331-351 566-586 (722)
380 KOG4360 Uncharacterized coiled 70.1 19 0.00041 39.1 8.2 48 302-349 218-265 (596)
381 PF07047 OPA3: Optic atrophy 3 70.0 9.1 0.0002 34.0 5.0 34 297-330 99-132 (134)
382 PF03980 Nnf1: Nnf1 ; InterPr 69.9 28 0.0006 29.3 7.8 32 321-352 77-108 (109)
383 PF15397 DUF4618: Domain of un 69.8 67 0.0014 32.0 11.4 32 299-330 77-108 (258)
384 TIGR01843 type_I_hlyD type I s 69.8 74 0.0016 31.9 12.1 22 310-331 203-224 (423)
385 PRK14155 heat shock protein Gr 69.7 14 0.0003 35.5 6.5 12 308-319 32-43 (208)
386 PF14362 DUF4407: Domain of un 69.7 62 0.0014 31.8 11.3 28 302-329 134-161 (301)
387 PF10481 CENP-F_N: Cenp-F N-te 69.7 34 0.00074 34.5 9.3 31 300-330 50-80 (307)
388 PRK09343 prefoldin subunit bet 69.7 24 0.00052 30.8 7.5 30 322-351 76-105 (121)
389 PLN02320 seryl-tRNA synthetase 69.5 32 0.0007 37.2 9.9 60 292-351 96-164 (502)
390 PF09730 BicD: Microtubule-ass 69.5 46 0.001 37.5 11.4 41 310-350 97-147 (717)
391 PRK06835 DNA replication prote 69.5 40 0.00087 34.2 10.1 59 294-352 20-86 (329)
392 PF06810 Phage_GP20: Phage min 69.4 46 0.001 30.3 9.6 33 302-334 33-68 (155)
393 TIGR01242 26Sp45 26S proteasom 69.4 10 0.00022 38.2 5.9 30 308-337 4-33 (364)
394 PRK05431 seryl-tRNA synthetase 69.4 32 0.00069 36.1 9.7 41 313-353 69-109 (425)
395 PF01486 K-box: K-box region; 69.3 20 0.00044 29.8 6.8 34 293-326 61-98 (100)
396 COG4238 Murein lipoprotein [Ce 69.3 33 0.0007 28.3 7.5 48 303-350 25-72 (78)
397 PF09766 FimP: Fms-interacting 69.2 22 0.00047 36.5 8.3 52 298-349 103-154 (355)
398 KOG1103 Predicted coiled-coil 69.2 32 0.0007 36.0 9.3 38 312-349 141-178 (561)
399 PRK14158 heat shock protein Gr 69.2 27 0.00059 33.2 8.3 16 307-322 58-73 (194)
400 PF03245 Phage_lysis: Bacterio 69.2 46 0.00099 29.3 9.2 49 303-351 14-62 (125)
401 PF01920 Prefoldin_2: Prefoldi 69.1 15 0.00032 30.0 5.9 37 314-350 66-102 (106)
402 PF10779 XhlA: Haemolysin XhlA 69.1 34 0.00075 27.0 7.7 43 303-345 6-48 (71)
403 KOG0999 Microtubule-associated 69.0 34 0.00074 37.7 9.8 82 276-357 129-220 (772)
404 PF08912 Rho_Binding: Rho Bind 68.9 25 0.00053 28.5 6.7 41 308-348 1-44 (69)
405 KOG0933 Structural maintenance 68.8 53 0.0012 38.5 11.7 46 312-357 817-862 (1174)
406 PF15030 DUF4527: Protein of u 68.7 41 0.00089 33.4 9.5 48 288-335 43-90 (277)
407 KOG4797 Transcriptional regula 68.7 10 0.00022 33.2 4.9 28 303-330 67-94 (123)
408 PF04999 FtsL: Cell division p 68.6 16 0.00035 30.0 6.0 33 312-344 37-69 (97)
409 PF03961 DUF342: Protein of un 68.5 37 0.0008 35.5 10.0 29 324-352 375-403 (451)
410 cd00632 Prefoldin_beta Prefold 68.5 26 0.00056 29.4 7.3 37 314-350 67-103 (105)
411 KOG0996 Structural maintenance 68.4 51 0.0011 39.1 11.6 53 298-350 537-589 (1293)
412 KOG0239 Kinesin (KAR3 subfamil 68.2 53 0.0011 36.8 11.5 15 338-352 300-314 (670)
413 PF12925 APP_E2: E2 domain of 68.1 13 0.00029 35.4 6.0 59 303-361 48-111 (193)
414 KOG0483 Transcription factor H 68.1 7.4 0.00016 37.1 4.3 42 308-349 110-151 (198)
415 PF04642 DUF601: Protein of un 68.0 34 0.00075 34.2 8.9 55 303-357 217-278 (311)
416 PF14915 CCDC144C: CCDC144C pr 68.0 48 0.001 33.7 10.1 52 305-356 58-109 (305)
417 PF07334 IFP_35_N: Interferon- 67.9 11 0.00024 30.9 4.7 26 321-346 4-29 (76)
418 PF14915 CCDC144C: CCDC144C pr 67.9 43 0.00093 34.1 9.7 63 291-353 181-243 (305)
419 PRK14139 heat shock protein Gr 67.7 23 0.00051 33.4 7.5 12 300-311 57-68 (185)
420 KOG0982 Centrosomal protein Nu 67.7 50 0.0011 35.3 10.4 56 297-354 279-334 (502)
421 TIGR01730 RND_mfp RND family e 67.6 30 0.00065 33.2 8.5 25 323-347 108-132 (322)
422 PF14389 Lzipper-MIP1: Leucine 67.4 53 0.0012 27.2 8.8 29 325-353 55-83 (88)
423 KOG2129 Uncharacterized conser 67.3 6.4 0.00014 41.6 4.0 39 306-344 46-84 (552)
424 PF05667 DUF812: Protein of un 67.2 36 0.00077 37.5 9.8 50 303-352 328-377 (594)
425 PF05852 DUF848: Gammaherpesvi 67.2 45 0.00098 30.5 8.9 50 306-355 57-113 (146)
426 cd07666 BAR_SNX7 The Bin/Amphi 67.1 32 0.0007 33.7 8.6 52 296-350 156-207 (243)
427 PRK14158 heat shock protein Gr 67.0 21 0.00045 34.0 7.0 24 306-329 50-73 (194)
428 TIGR03689 pup_AAA proteasome A 67.0 13 0.00029 40.1 6.4 38 315-352 6-43 (512)
429 PF14645 Chibby: Chibby family 66.9 16 0.00035 31.9 5.9 29 320-348 74-102 (116)
430 PF12711 Kinesin-relat_1: Kine 66.9 21 0.00046 29.9 6.3 31 303-333 31-67 (86)
431 COG4420 Predicted membrane pro 66.9 25 0.00054 33.5 7.5 32 321-352 138-169 (191)
432 PRK09413 IS2 repressor TnpA; R 66.9 13 0.00028 32.0 5.3 28 322-349 76-103 (121)
433 PF06103 DUF948: Bacterial pro 66.7 50 0.0011 26.7 8.4 41 305-345 28-68 (90)
434 PF06810 Phage_GP20: Phage min 66.5 32 0.00069 31.4 7.9 40 302-341 26-68 (155)
435 KOG2991 Splicing regulator [RN 66.5 48 0.001 33.3 9.6 66 301-366 141-212 (330)
436 PF10226 DUF2216: Uncharacteri 66.5 38 0.00083 32.4 8.6 26 311-336 49-74 (195)
437 PF03961 DUF342: Protein of un 66.3 28 0.0006 36.5 8.5 34 317-350 375-408 (451)
438 PF04871 Uso1_p115_C: Uso1 / p 66.3 98 0.0021 27.7 11.5 19 305-323 57-75 (136)
439 PF11544 Spc42p: Spindle pole 66.3 59 0.0013 26.8 8.5 47 306-352 8-54 (76)
440 PF10458 Val_tRNA-synt_C: Valy 66.2 56 0.0012 25.4 8.2 47 304-350 5-65 (66)
441 PF06698 DUF1192: Protein of u 66.2 20 0.00043 28.1 5.6 24 305-328 23-46 (59)
442 KOG4807 F-actin binding protei 66.1 44 0.00094 35.5 9.6 38 333-370 465-502 (593)
443 PF11365 DUF3166: Protein of u 66.1 24 0.00051 30.2 6.5 28 305-332 17-44 (96)
444 PRK14163 heat shock protein Gr 66.0 22 0.00048 34.4 7.1 15 299-313 64-78 (214)
445 KOG0971 Microtubule-associated 66.0 22 0.00047 41.2 7.9 49 304-352 397-445 (1243)
446 PRK14474 F0F1 ATP synthase sub 65.9 1.2E+02 0.0025 29.7 12.2 39 283-321 37-75 (250)
447 TIGR00219 mreC rod shape-deter 65.8 14 0.00031 36.6 6.0 33 307-339 70-106 (283)
448 PF10883 DUF2681: Protein of u 65.8 27 0.00059 29.3 6.7 34 311-349 31-64 (87)
449 KOG0018 Structural maintenance 65.8 54 0.0012 38.5 11.1 67 292-358 412-478 (1141)
450 TIGR00414 serS seryl-tRNA synt 65.6 41 0.00089 35.2 9.6 40 313-352 72-111 (418)
451 KOG0612 Rho-associated, coiled 65.6 69 0.0015 38.2 11.9 41 303-343 494-534 (1317)
452 PF13805 Pil1: Eisosome compon 65.5 49 0.0011 33.1 9.6 42 304-345 166-209 (271)
453 PF11068 YlqD: YlqD protein; 65.5 52 0.0011 29.4 8.9 11 374-384 102-112 (131)
454 KOG3819 Uncharacterized conser 65.4 30 0.00065 37.1 8.4 50 275-324 47-107 (513)
455 COG3879 Uncharacterized protei 65.3 31 0.00067 34.1 8.0 7 305-311 73-79 (247)
456 KOG4674 Uncharacterized conser 65.2 59 0.0013 40.3 11.7 76 278-353 811-887 (1822)
457 KOG4657 Uncharacterized conser 65.1 83 0.0018 31.0 10.7 82 272-358 32-113 (246)
458 TIGR02338 gimC_beta prefoldin, 65.0 31 0.00067 29.3 7.1 24 326-349 83-106 (110)
459 PF00261 Tropomyosin: Tropomyo 64.9 1.3E+02 0.0029 28.7 12.4 43 306-348 172-214 (237)
460 PF02994 Transposase_22: L1 tr 64.8 22 0.00049 36.6 7.4 53 306-358 140-192 (370)
461 PRK00247 putative inner membra 64.7 27 0.00058 37.1 8.0 12 291-302 301-312 (429)
462 KOG4643 Uncharacterized coiled 64.6 58 0.0013 38.2 10.9 68 284-351 375-442 (1195)
463 PF07851 TMPIT: TMPIT-like pro 64.4 35 0.00077 35.0 8.6 23 300-322 25-48 (330)
464 KOG0243 Kinesin-like protein [ 64.4 72 0.0016 37.5 11.8 30 305-334 443-472 (1041)
465 KOG4370 Ral-GTPase effector RL 64.4 21 0.00046 38.0 7.1 50 305-354 408-457 (514)
466 PF06216 RTBV_P46: Rice tungro 64.3 18 0.00039 36.2 6.2 41 298-338 73-113 (389)
467 PF05812 Herpes_BLRF2: Herpesv 64.3 10 0.00022 33.6 4.1 24 326-349 5-28 (118)
468 PF10481 CENP-F_N: Cenp-F N-te 64.3 52 0.0011 33.3 9.4 70 279-348 15-91 (307)
469 PF13094 CENP-Q: CENP-Q, a CEN 64.3 27 0.00058 31.4 7.0 51 302-352 40-90 (160)
470 KOG0995 Centromere-associated 64.2 58 0.0012 35.8 10.4 84 278-361 248-331 (581)
471 PF12128 DUF3584: Protein of u 64.2 53 0.0011 38.9 11.1 88 277-364 464-551 (1201)
472 PRK13923 putative spore coat p 64.2 66 0.0014 30.2 9.6 62 283-344 57-152 (170)
473 PRK14160 heat shock protein Gr 64.1 34 0.00075 33.0 8.0 64 302-365 60-123 (211)
474 TIGR03689 pup_AAA proteasome A 64.1 14 0.0003 39.9 5.9 43 311-353 2-44 (512)
475 COG3352 FlaC Putative archaeal 64.1 40 0.00087 31.2 8.0 56 302-357 78-134 (157)
476 PF00769 ERM: Ezrin/radixin/mo 64.0 82 0.0018 30.7 10.7 77 278-354 43-119 (246)
477 PF00261 Tropomyosin: Tropomyo 64.0 1.3E+02 0.0028 28.9 12.0 72 283-354 156-227 (237)
478 PF04201 TPD52: Tumour protein 64.0 22 0.00048 33.1 6.4 39 309-347 28-66 (162)
479 PRK09174 F0F1 ATP synthase sub 64.0 1.4E+02 0.0029 28.5 12.2 77 281-357 83-164 (204)
480 PF04340 DUF484: Protein of un 64.0 30 0.00065 32.7 7.6 49 305-357 42-90 (225)
481 PF06295 DUF1043: Protein of u 64.0 58 0.0013 28.6 8.9 69 294-362 16-84 (128)
482 TIGR02680 conserved hypothetic 63.9 71 0.0015 38.5 12.1 79 279-357 273-359 (1353)
483 PF00435 Spectrin: Spectrin re 63.8 66 0.0014 24.8 11.3 69 281-349 33-105 (105)
484 PF07246 Phlebovirus_NSM: Phle 63.7 53 0.0012 32.8 9.4 83 277-361 151-239 (264)
485 KOG2129 Uncharacterized conser 63.7 32 0.00069 36.7 8.2 52 302-353 252-307 (552)
486 KOG2185 Predicted RNA-processi 63.6 32 0.0007 36.4 8.2 67 286-353 397-473 (486)
487 KOG4673 Transcription factor T 63.6 27 0.00059 39.3 7.9 53 302-354 717-769 (961)
488 KOG2077 JNK/SAPK-associated pr 63.5 24 0.00051 39.0 7.4 60 303-362 329-388 (832)
489 TIGR00606 rad50 rad50. This fa 63.5 62 0.0013 38.6 11.5 76 278-356 866-941 (1311)
490 cd00890 Prefoldin Prefoldin is 63.4 26 0.00056 29.6 6.4 39 305-343 89-127 (129)
491 PRK00409 recombination and DNA 63.3 80 0.0017 35.8 11.9 72 278-349 523-595 (782)
492 KOG4603 TBP-1 interacting prot 63.3 43 0.00092 31.8 8.1 51 302-352 85-144 (201)
493 PRK14162 heat shock protein Gr 63.3 13 0.00028 35.4 4.9 48 302-349 31-78 (194)
494 PF03233 Cauli_AT: Aphid trans 63.2 54 0.0012 30.6 8.8 75 278-352 86-163 (163)
495 PRK01156 chromosome segregatio 63.1 72 0.0016 36.1 11.6 77 278-354 649-725 (895)
496 COG3879 Uncharacterized protei 63.0 32 0.0007 34.0 7.7 64 287-351 35-102 (247)
497 PHA03155 hypothetical protein; 63.0 9.8 0.00021 33.5 3.7 24 326-349 10-33 (115)
498 KOG0999 Microtubule-associated 62.8 68 0.0015 35.5 10.6 75 278-352 113-191 (772)
499 PF14257 DUF4349: Domain of un 62.7 33 0.00071 33.1 7.7 69 303-371 132-202 (262)
500 PRK14147 heat shock protein Gr 62.6 29 0.00063 32.2 7.0 62 304-365 19-80 (172)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2e-70 Score=502.71 Aligned_cols=179 Identities=60% Similarity=1.043 Sum_probs=168.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC--C
Q 016555 1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y 78 (387)
Q Consensus 1 Mg~~e~~~~~k~~k~~s~~~~~~~~~~~ypdWs~~QaYygp~~~~pp~f~s~vas~~~phPymWg~~qpmmpPyGtP--y 78 (387)
||++|++|++|++|++++++++|+++||||||++||||||+| ++|+||++.||++|+|||||||+||||||||||| |
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY 79 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY 79 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence 999999999999999887655899999999999999999999 8889999999999999999999999999999997 9
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCcCC-CCCCCCCCcccchhhccccC-CcccccCCCCCCCCCC
Q 016555 79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG 154 (387)
Q Consensus 79 ~a~yp~ggvyaHP~~p~~~~p~~~~~~~sp~--~~tp~s~e~-~~k~~~~~~~~~~Kk~Kg~~-Gl~ms~g~~~~~~~~~ 154 (387)
+||||||||||||+||+++|||++++++++. ..+|+++|+ ++|++++|||+++|||||+| ||+|++||++.+|+++
T Consensus 80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~ 159 (189)
T PF07777_consen 80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG 159 (189)
T ss_pred ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence 9999999999999999999999999999954 478999999 69999999999999999999 6999999999999998
Q ss_pred -CCCCCCCCC---CCCCCCCCCCCcccccc
Q 016555 155 -GAEQRPSQS---EADGSTDGSDGNTVRAG 180 (387)
Q Consensus 155 -~~~~~~S~S---~segssdgsd~ns~~~~ 180 (387)
++|++.||| .+||||||||+|+++++
T Consensus 160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~ 189 (189)
T PF07777_consen 160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS 189 (189)
T ss_pred CCCCCccCccccccccccccCcCccccCCC
Confidence 568899996 47999999999999874
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.50 E-value=1.2e-13 Score=106.79 Aligned_cols=64 Identities=52% Similarity=0.702 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
|++.|+.+|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999998873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.44 E-value=5.5e-13 Score=103.30 Aligned_cols=62 Identities=55% Similarity=0.720 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
+.|+.+|+++||+||++||.||++|+.+|+.+|..|+.+|..|+.++..|+.++..|+.++.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999999999999998888777776653
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.36 E-value=2.5e-12 Score=122.52 Aligned_cols=91 Identities=27% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLF 359 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l 359 (387)
|+|-+|||++||++|+-+|.|||+++++|+.++..|+.||+.|+.|.+.|++.++.|..+|..|..+|+.+..+++....
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccCCCcccee
Q 016555 360 SNEANRSCVFV 370 (387)
Q Consensus 360 ~~~~~~~~~~~ 370 (387)
..+.++.|...
T Consensus 147 ~~~~~~~v~ee 157 (292)
T KOG4005|consen 147 QQQHNTRVIEE 157 (292)
T ss_pred HHHHhhHHHhh
Confidence 77777666543
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.36 E-value=1.7e-12 Score=126.48 Aligned_cols=64 Identities=33% Similarity=0.325 Sum_probs=58.5
Q ss_pred CccccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 271 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 271 ~e~~~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
+..-..||.-+||+-|+++|||+||.||+|||+|+.+||.||..|+.+|..|-+||+.|++-|-
T Consensus 280 sp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 280 SPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred CCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 3445678999999999999999999999999999999999999999999999999999987653
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.30 E-value=1.8e-12 Score=132.88 Aligned_cols=96 Identities=30% Similarity=0.395 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
+|+.+||.|||+||++||+.||+|||+|++.||.||....+||++|++++++|+.++..|.++...|...+.+.
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~------ 319 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQV------ 319 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhc------
Confidence 78899999999999999999999999999999999999999999999999988766555555554444444332
Q ss_pred hcccccCCCccceeccccccccc
Q 016555 357 SLFSNEANRSCVFVCECFCCNLL 379 (387)
Q Consensus 357 ~~l~~~~~~~~~~~~~~f~~n~l 379 (387)
.-......+|.......||.++
T Consensus 320 -an~s~qt~tC~av~~lS~~l~~ 341 (472)
T KOG0709|consen 320 -ANKSTQTSTCLAVLLLSFCLLL 341 (472)
T ss_pred -ccchhccchhHHHHHHHHHHHH
Confidence 2233444557776655555554
No 7
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.21 E-value=5.6e-11 Score=123.55 Aligned_cols=69 Identities=35% Similarity=0.430 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 276 ~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.|.+-.||+.|+++|||+|..||+|||+|++.||.+++.|.+||+.|+.|...|+++++.|..||..|+
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 588899999999999999999999999999999999999999999999888888888888888887776
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.17 E-value=1.7e-10 Score=86.79 Aligned_cols=52 Identities=54% Similarity=0.739 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+.++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..+|..|+.+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677 99999999999999999999999999999999999999988754
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.73 E-value=4.5e-08 Score=94.76 Aligned_cols=75 Identities=31% Similarity=0.357 Sum_probs=63.4
Q ss_pred CccccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 271 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 271 ~e~~~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.+..+++++..|-+|.+++|||+|++||.||.++|.+||.+|..|..+|..|..++..|++. ..+|++++...
T Consensus 195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~-------v~e~k~~V~~h 267 (279)
T KOG0837|consen 195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ-------VAELKQKVMEH 267 (279)
T ss_pred CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999988887664 44566666655
Q ss_pred hh
Q 016555 351 II 352 (387)
Q Consensus 351 ~~ 352 (387)
.+
T Consensus 268 i~ 269 (279)
T KOG0837|consen 268 IH 269 (279)
T ss_pred Hh
Confidence 43
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.45 E-value=2.6e-09 Score=88.46 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 276 ~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
++..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..|+.+++.|..++..|
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999988888888887777777666555555444
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.28 E-value=4.3e-06 Score=82.42 Aligned_cols=53 Identities=32% Similarity=0.480 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
.|.+++|+.||-|.|+||+++.|.|+.+++.|+.+|.+|+.++..|.+|+.-|
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777889999999999999999999999999999999998876654433
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.15 E-value=7.2e-06 Score=80.21 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=47.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
..|+.||-+|+||||.++|...+++..||..|+.||+.|+.+|.+|+.++..|+.
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345569999999999999999999999999999999999999988776554443
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.76 E-value=0.00024 Score=62.91 Aligned_cols=67 Identities=28% Similarity=0.382 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 279 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 279 ~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-.+|..||-++||=-|+-||-|+-++-++|| .++..|.++|+.|.+++..++.|.+.|+.+++.+..
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE-------~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELE-------KEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999988766655 555666667777777777777788888888887755
No 14
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.35 E-value=0.0017 Score=60.93 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=38.9
Q ss_pred ChhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCC-CCCCCCCc-----ccCCCCCCCCCCCCCCCCCCCC-CC
Q 016555 31 DWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMM-PPYGAPYA-----AIYSTGGVYAHPAVPLGSHAHN-HG 103 (387)
Q Consensus 31 dWs~~QaYygp~~~~pp~f~s~vas~~~phPymWg~~qpmm-pPyGtPy~-----a~yp~ggvyaHP~~p~~~~p~~-~~ 103 (387)
|=....+|. -=.++=.||.+. .+|||.--. +. .|-.-||+ .|.||.|. .||+.++ |||+ .|
T Consensus 22 ~~~~~~~yp-DWs~mQAYyg~~-----~~p~~f~s~---va~sp~phPYMWG~~q~mmPPYGt-P~pY~A~--YphGgvY 89 (189)
T PF07777_consen 22 DQPTPHVYP-DWSAMQAYYGPG-----APPPYFNSA---VASSPQPHPYMWGPQQPMMPPYGT-PVPYPAM--YPHGGVY 89 (189)
T ss_pred CCCCCccCC-ccHhhhhccCCC-----CCCcccCcc---cCCCCCCCCcccCCCccccCCCCC-CCCCccc--cCCCccc
Confidence 445566663 112344577532 678885432 11 12233444 68889888 8889988 7774 88
Q ss_pred CCCC
Q 016555 104 VPTS 107 (387)
Q Consensus 104 ~~~s 107 (387)
++++
T Consensus 90 AHP~ 93 (189)
T PF07777_consen 90 AHPS 93 (189)
T ss_pred cCCC
Confidence 8877
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.33 E-value=0.00037 Score=74.81 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLFSN 361 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~ 361 (387)
|-.||+=+||.||++||.||..-|..||.+|+.|+.|-.+|.+|-..+. .+...++.+|..|+.+.-..+.+.
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d-------~~L~~~kqqls~L~~~Vf~~lrd~ 562 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELD-------STLGVMKQQLSELYQEVFQQLRDE 562 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456888999999999999999999999999998888777766655544 455566666666666555555444
Q ss_pred c
Q 016555 362 E 362 (387)
Q Consensus 362 ~ 362 (387)
.
T Consensus 563 e 563 (604)
T KOG3863|consen 563 E 563 (604)
T ss_pred c
Confidence 4
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.99 E-value=0.0034 Score=54.06 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.+.+|+.++..|..+..+|+.++..|-+++..|+.||..||++|.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999998755
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.95 E-value=0.012 Score=55.97 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..++.+++++..+..|+.+|++|++++..++.+++.|++||..++..+..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666777778888888888888888888888888888888877665
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.84 E-value=0.0053 Score=53.20 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..+.+|++++..|..+...|+..+..|-+++..|+.||..||++|.++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999999986
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.66 E-value=0.015 Score=46.77 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+.-|+.+++.|+.+|..|..+...|++++.+|+.|...+.++|..+.+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544555555555555555555555554444
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.51 E-value=0.021 Score=45.94 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+.++.|+.+|..+-..+..|+.++..|++++..|..+|..|+++...+.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3567777777777666666666666666665555555555555555443
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.38 E-value=0.027 Score=44.68 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
+.++.|-..++.|+.||..|+.++..++.+...|...|..-+.+|+.+...+.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777778888888888888888888888888888877777777765443
No 22
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.07 E-value=0.13 Score=47.91 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
++.++....+..-+.-......++.+++.-++.|..|...|.-++..|.+++..|+.||..|-+++-+.....++
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666778888888888888888888888999999999999999999998887776554
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.07 E-value=0.038 Score=45.48 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.-++|.+++..|+.....|..++...++++++|+.||..|..=|..+..
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477888999999999999999999999999999999999999988755
No 24
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.80 E-value=0.036 Score=47.97 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+.+|+.++.+|-+|...|++.+..|-+++..|+-||..||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46788999999999999999999999999999999999999999988
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.057 Score=43.60 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
.-+.-|+-+|+.|+.+|+.|..++..++...+.|+.||.+|+++-
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888877777777777777777653
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.06 Score=43.49 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
==|-++++|..+-..|..|-+.++...+.|..++++|..|.....++|+.+.+.
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446789999999999999999999999999999999999999999999988774
No 27
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.75 E-value=0.029 Score=41.31 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+|+.+...|+...+.|+.+++.|..||..|+.+|..+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555666666666666666655544
No 28
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.72 E-value=0.042 Score=50.57 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
...|+.||..|+.++..|+++++.|+.||..|..++..+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666665543
No 29
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.64 E-value=0.067 Score=42.45 Aligned_cols=49 Identities=27% Similarity=0.258 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+..|+.+|+.|-...+.|+.+...|+++...+..|++.|+++.......
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998876543
No 30
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=95.63 E-value=0.00048 Score=70.83 Aligned_cols=64 Identities=30% Similarity=0.404 Sum_probs=55.3
Q ss_pred ccccHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016555 274 WIQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLI-DENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 274 ~~~dE~e~KR~RRk~rNRESARR---SR~RKq~~~eeLe~rV~~L~-~EN~~L~~el~~L~ee~~~L~ 337 (387)
.+..+.+.||.+|+++|+.+|.+ ||.||+....+|+.+|+.|+ .++..|..+|..|+.+.+.|+
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~ 213 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE 213 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence 35588899999999999999999 99999999999999999999 888888777777766554443
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.58 E-value=0.22 Score=47.37 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
-+++..+|+.+++.+..+..+|+.++++|+++++.++.|++.|+.++..+.....
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888888888888888888888887766443
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.45 E-value=0.067 Score=56.58 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+..++||++++.|+.|.+.|.++.+.++++++.|+.||..|+++++.+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999999999999999999999999999654
No 33
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.39 E-value=0.094 Score=43.08 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+-|.-|+-+|+.|+.+|..|..+++.++.....|+.||..|+++
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566777777888888888777777444444444444444444
No 34
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.37 E-value=0.1 Score=42.84 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
|-++++|+.+-..|..+++.++..-..|.+++.+|+.|...+.++|..+.+.
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777777777777777777777777777776653
No 35
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=95.25 E-value=0.46 Score=39.61 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-+.-++|..+.+.+=|++=..|.-+.....+|+.+++.|..+...|-+++.....++..|+.-|..+..+|.....
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999998888888888899999999999999999999999999999999999999999987654
No 36
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.20 E-value=0.12 Score=50.18 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
-++.++++..+-+.|..+|.+|..+++.+++++..|+.||..|.+.++.+.++.-
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 3445666666667777777777777778888888899999999988888766443
No 37
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.13 E-value=0.077 Score=39.11 Aligned_cols=42 Identities=36% Similarity=0.388 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.||...+.|+..-..|+.+...|.++++.|++|...|+.+|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888888889999999999999999999988875
No 38
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.96 E-value=0.49 Score=42.07 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+++..|-..-||..-....++...++.|+..++.|+.++..+..++..++.+...|..++..+...++....+
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777778888888888888888888888888888777777777766666666666555443
No 39
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.82 E-value=0.15 Score=40.44 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+++++||.++..++.-..+|...+...+++++.|+.+...|.++|+.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999998875
No 40
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=94.68 E-value=0.047 Score=50.49 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+++||.++++--++|.-|..||+ |.+.|+.++..||++|.+|..++
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888773 33444444444444444444444
No 41
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=94.66 E-value=0.098 Score=56.01 Aligned_cols=83 Identities=20% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCccccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 270 PPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 270 ~~e~~~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+....-+.|.|-.||.+ |+-|-.+-.++.++. -++--..|+.+|+.|..||+.|+.||..||.+|..
T Consensus 266 l~~stp~~~~d~kv~krqQ---------RmIKNResA~~SRkK--KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 266 LQSSTPNVGSDIKVLKRQQ---------RMIKNRESACQSRKK--KKEYMLGLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred ccCCCCCCccCHHHHHHHH---------HHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455556788999888765 233433444433322 23344678999999999999999999999999999
Q ss_pred hhhhhhhhcccccC
Q 016555 350 VIIFWTVSLFSNEA 363 (387)
Q Consensus 350 l~~~~~~~~l~~~~ 363 (387)
+..|.....+....
T Consensus 335 l~~En~~~kvpsp~ 348 (655)
T KOG4343|consen 335 LVSENQRLKVPSPK 348 (655)
T ss_pred HhhcCcccccCCCc
Confidence 99988888766654
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.48 E-value=0.46 Score=46.55 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.++.+|+.+-+.|+.||+.|+.+...|-.++.+|+.+...|+++|.++...
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 457889999999999999999999999999999999999898888776443
No 43
>PRK11637 AmiB activator; Provisional
Probab=94.40 E-value=0.58 Score=48.35 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
.-+.+++.|+.++..++.+...+..+|..++.++..|+.+...|+++|..+...+....
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777777777777777777777777777777777777666655554444
No 44
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.37 E-value=0.094 Score=51.88 Aligned_cols=40 Identities=30% Similarity=0.295 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 016555 311 KVDSLIDENASLKSEINQLSENSE----KLRQENAALLVCHINV 350 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~----~L~~EN~~Lr~~L~~l 350 (387)
.+..|++||++|++|+..|+++.. .|+.||++||+.|.-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456677888888888766644333 4889999999877654
No 45
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=94.23 E-value=0.3 Score=48.12 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
.++|++...+-+++..+.-+....+++.++..|.+|++.|+.++.+|+.+|..+......
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555556666666666666666666666666666665554333
No 46
>PRK00295 hypothetical protein; Provisional
Probab=94.15 E-value=0.35 Score=38.36 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+++++||.++..++.-..+|-..|.+.+++++.|+.+...|.++|+.+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999998864
No 47
>PRK04325 hypothetical protein; Provisional
Probab=94.11 E-value=0.35 Score=39.01 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+++++||.++..++.-..+|-..|...++++..|+.+...|.++|+++.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999998888764
No 48
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.46 Score=53.09 Aligned_cols=34 Identities=15% Similarity=-0.050 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 016555 328 QLSENSEKLRQENAALLVCHINVIIFWTVSLFSN 361 (387)
Q Consensus 328 ~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~ 361 (387)
.|+.+...|..|...|..+|+++.+.+.+..++.
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 4455566666667777777777666655555444
No 49
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=94.06 E-value=0.25 Score=47.54 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.+++++..+.+.+.++.++..|+++.+.++.|+++|..|++.|+++++.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3445555556666777777778888888888888888888888888763
No 50
>PRK02119 hypothetical protein; Provisional
Probab=94.01 E-value=0.35 Score=38.95 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+++.+||.++..++.-..+|-..|.+.+++++.|+.+...|.++|+.+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888888888888888888888888888888888888887764
No 51
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.00 E-value=0.35 Score=38.77 Aligned_cols=49 Identities=16% Similarity=0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+++.+||.++..++.-..+|-..|.+.++++..|+.+...|.++|+.+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788899999999988889988888888888888888888888888764
No 52
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.98 E-value=0.91 Score=41.03 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=50.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
..+.|++.+-+--.-+++.++.|+.++..+..+...|..++..|+.+...|..+....+.++..+..
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777888888888888888888888888888777777777777777766666543
No 53
>PRK00736 hypothetical protein; Provisional
Probab=93.97 E-value=0.37 Score=38.22 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+++++||.++..++.-..+|-..|.+.+++++.|+.+...|.++|+.+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999998764
No 54
>PRK04406 hypothetical protein; Provisional
Probab=93.79 E-value=0.43 Score=38.71 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+++.+||.++..++.-..+|-..|...+++++.|+.+.+.|.++|+.+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678888888888888888888888888888888888888888887654
No 55
>PRK11637 AmiB activator; Provisional
Probab=93.55 E-value=1 Score=46.53 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.-...++.++.+++.++.+...+..++..|++++..++.+...+++.|..+..
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777777777776666666665544
No 56
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=93.40 E-value=0.76 Score=41.18 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
.+|..+-..|.+++++|..||..++.++..+........
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888888888877665444433
No 57
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=93.33 E-value=0.52 Score=45.77 Aligned_cols=41 Identities=29% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSE---KLRQENAALLVCHINV 350 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~---~L~~EN~~Lr~~L~~l 350 (387)
.....|.+||.+|++|+..|+.+.. .|+.||++|++.|.-.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455666666666666666655544 6789999999877643
No 58
>PRK00846 hypothetical protein; Provisional
Probab=93.14 E-value=0.6 Score=38.25 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+++++||.++...+.-..+|-..+...+.+++.|+.+...|.++|+++..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367888888888888888888888888888888888888888888888753
No 59
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.11 E-value=0.5 Score=40.78 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|=.++..|+.....|..++..|+.+...|..||..|+-+...+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555544444433
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.10 E-value=0.36 Score=51.20 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+..+|.++.+.|+++..+|+.....|..+|
T Consensus 110 ~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 110 ETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=92.94 E-value=0.9 Score=35.00 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777777777777777777777777777653
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.82 E-value=0.77 Score=51.02 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
|.|..|+.+|+.|...|+.++...++++..|+.|...|+.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777777777777777666666666666655554
No 63
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=92.74 E-value=0.022 Score=58.67 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=38.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 323 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~ 323 (387)
.|=.++||.||-|||.|||..+..|+.+.+.+..+|..|.
T Consensus 287 ~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 287 RRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 7778999999999999999999999999999999999998
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.73 E-value=0.69 Score=41.57 Aligned_cols=49 Identities=31% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+..+.|+.++..|+.++..+..+|..|+.++..|+.+...|..+|....
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666555555555555555555543
No 65
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.54 E-value=0.67 Score=42.05 Aligned_cols=52 Identities=35% Similarity=0.284 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el--~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-++++.+|+.++..|+.|...|...+ .+|..++..|+.|+..|.++|..+..
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666655 46677788888888888888887765
No 66
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.53 E-value=0.51 Score=46.16 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|+.+||+|+..+.+++..|+.+++.|++.|-.|=++++-+..
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555666666666667777788777776644
No 67
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.49 E-value=1 Score=35.95 Aligned_cols=48 Identities=29% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSE-------INQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~e-------l~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.+++.|.+++...+.+|..|..+ +..+-.++.+|+.||..|+.+|+..
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555544 4445555566666666666665543
No 68
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.42 E-value=2.3 Score=40.97 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
..-+++++.|+.+++.|+..|..|...+..++++...|..+...+..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666555554443
No 69
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.27 E-value=2.4 Score=40.78 Aligned_cols=49 Identities=24% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
++..+|..+++.|+.|...|+..++.|+...+.++.+...|..++..+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666666666666666655543
No 70
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=0.58 Score=51.01 Aligned_cols=46 Identities=28% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.++..|+.+|+.|+.||..|+.++.+|+.++++|+++.+.++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777778777777777777777777777766666554
No 71
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.18 E-value=1.5 Score=46.16 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|--+++.|+.++++|+.||.+|+..+..|+..+++|..+...+.++|+.+.
T Consensus 295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334567788899999999999999999999888888777766666665543
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.14 E-value=3.1 Score=39.35 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
+++....++.+++-+.-+.+-..-+.++..++.++..|+-|+..|.+++..|.++.+.|.
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666655555555566666666666666666666666666666555554
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.11 E-value=2.1 Score=46.37 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
.+++..+...+....-+.+++.|+..+...+.++..|+.+...|....+.|..|+..|
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333333333333333
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=92.08 E-value=0.59 Score=39.97 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.++++++|+++++.|+++|+.|+.++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566677777777777777777777777654
No 75
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.06 E-value=1.9 Score=33.15 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
..++.|+.+...|..++..|..++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555555555555544
No 76
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.82 E-value=0.86 Score=39.29 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
|-.+|-+|+.-...|.+++..+++++.+|++||..|-+-|+.+...
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 4456677777777888888999999999999999998888776543
No 77
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=1.5 Score=49.21 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016555 336 LRQENAALLVCHINVII 352 (387)
Q Consensus 336 L~~EN~~Lr~~L~~l~~ 352 (387)
|.+.+..|..+|+.|..
T Consensus 435 ~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555554444
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.69 E-value=0.46 Score=47.06 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
++.--.+....++++..+++.++.++.++..++..|+.+++.|+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555555555555555555555555554443
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.63 E-value=2.3 Score=44.76 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=53.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
||.+-.+++=+.-.+.....+++...|+.+++.|+.++..|..++.+....+.+++..++.+...|..+..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444445555555555666677888888999999999888888888888888888877777777777665544
No 80
>PRK09039 hypothetical protein; Validated
Probab=91.62 E-value=2.5 Score=43.04 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
|..|++|...|+.++..|+.+++.++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333
No 81
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.62 E-value=3.5 Score=42.32 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++..++.++.+-+|.. ++++.|.++-+.|..-.++|+.++++|+++...|....+.|+.+.++
T Consensus 215 ~~eklR~r~eeeme~~~---------aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQ---------AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444444444444433 44445555555555555555555555666655566566666666655
No 82
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.45 E-value=0.26 Score=46.12 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=28.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
|.+|.++++| +.+++++++|+.+++.|+.+.++|+..+..|-
T Consensus 92 R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 92 RQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766663 44557788888888888776665555555554
No 83
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.43 E-value=0.69 Score=39.56 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
...+|+++++.++.+|+.|+++...|+++.+.|+..-..|.+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 45667777777777777777777777777777765333333333
No 84
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.42 E-value=1.1 Score=38.33 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASL--KSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L--~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++++.|+..|+.+...| ++++..|+-+..+++.+...|.++|+.+.+
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334466666666666666 666666666666666666666666665543
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.41 E-value=2.1 Score=41.88 Aligned_cols=48 Identities=25% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.++..|..++..++.+...|..++..|..+.+.|+.+...|+.+|..+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655555555555555555555555555555555554443
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.38 E-value=2.1 Score=45.02 Aligned_cols=13 Identities=15% Similarity=0.182 Sum_probs=5.3
Q ss_pred CcccccCCCCCCC
Q 016555 139 GLAMSIGNASAES 151 (387)
Q Consensus 139 Gl~ms~g~~~~~~ 151 (387)
|+++++|.+-++|
T Consensus 28 g~~~i~G~NG~GK 40 (562)
T PHA02562 28 KKTLITGKNGAGK 40 (562)
T ss_pred CEEEEECCCCCCH
Confidence 3444444433333
No 87
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=0.31 Score=51.43 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCCCCC--CCcccCCCC
Q 016555 47 PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYSTG 85 (387)
Q Consensus 47 p~f~s~vas~~~phPymWg~~qpmmpPyGt--Py~a~yp~g 85 (387)
|+|+.+ ++||.+ +.+.+.||- ||.+|||-.
T Consensus 424 p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~~ 455 (483)
T KOG2236|consen 424 PSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPAY 455 (483)
T ss_pred CCCCcc-----CCCCCC----CCCcccccccCccccCCCCC
Confidence 566533 677754 445566776 888888754
No 88
>PRK02119 hypothetical protein; Provisional
Probab=91.25 E-value=1.5 Score=35.36 Aligned_cols=55 Identities=9% Similarity=-0.066 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
++..|+.|+..|+....-+..-|+.|.+.+.+...++..|+.+|+.+...+....
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999999999999999999999999999999999877665543
No 89
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.19 E-value=0.81 Score=44.80 Aligned_cols=48 Identities=33% Similarity=0.450 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
|.|=|+||.|-=..-| +-++.+..|+.+|+.|+++|..|-+++.-|+.
T Consensus 88 RDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 88 RDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444544444432 23344555566666666666666666555543
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.16 E-value=3.5 Score=40.39 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=45.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhh
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE---------NSEKLRQENAALLVCHINV 350 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e---------e~~~L~~EN~~Lr~~L~~l 350 (387)
-.++...-.+.+++.=.-++.++++|+.+|..++.+.+.++.++..++. ++..|..|...+++++..+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777788888999999999999888888887776543 3344444444444444443
No 91
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.10 E-value=1 Score=41.60 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
...|+.+.+.|+.++..|+.++..|+.++..|..++..+.+..+.+.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666655543
No 92
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.99 E-value=2.3 Score=43.59 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
=.|-+.+...||.-+..|++||+.|..+++.|.++|.+.+.|...|..+|.+...-
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 34556777888888999999999999999999999999999988888887775543
No 93
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.94 E-value=5.8 Score=35.21 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.++.|+.+++.++.++..+..+...|+.++..+...+..+++++.
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333333333333333
No 94
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.93 E-value=4.7 Score=35.41 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+-..|..++..++..++.|..+|..|..+|+.+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455566666666666777777777766543
No 95
>PRK04406 hypothetical protein; Provisional
Probab=90.82 E-value=1.8 Score=35.04 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++.|+.|+..|+....-+..-|+.|.+.+.+...++..|+.+|+.+...+...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999999999987766554
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.76 E-value=4.5 Score=38.73 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
.+.++++++.+++.|+.+...++.++..+++++..++.++...+.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333
No 97
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.75 E-value=1.4 Score=38.43 Aligned_cols=9 Identities=33% Similarity=1.032 Sum_probs=5.7
Q ss_pred ccccccccc
Q 016555 372 ECFCCNLLI 380 (387)
Q Consensus 372 ~~f~~n~l~ 380 (387)
||-||..++
T Consensus 99 dClFCl~~L 107 (110)
T PRK13169 99 DCLFCLELL 107 (110)
T ss_pred CcHHHHHHH
Confidence 677776543
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.70 E-value=2 Score=42.08 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-+-+|..+++.|+.|+..|+-+|++++-++++|....+.|-.+|.....
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777788777778777777777777777777777777666543
No 99
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.65 E-value=1.4 Score=43.14 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.9
Q ss_pred Cccccc
Q 016555 242 PTKLEL 247 (387)
Q Consensus 242 ~t~l~~ 247 (387)
||++.|
T Consensus 45 TT~~eI 50 (290)
T COG4026 45 TTNVEI 50 (290)
T ss_pred CchHHH
Confidence 444444
No 100
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=90.65 E-value=1.5 Score=44.02 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+.-..+-+.|+.|...|..+.++|+++...|+.|++.||+-|.+..
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666666666666666666666666665555443
No 101
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=90.49 E-value=0.94 Score=44.97 Aligned_cols=55 Identities=13% Similarity=-0.000 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+++=.||.+++....|...|+.++..|+.++..++++.+..|+.|+-+..++...
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kkp 118 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKKP 118 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Confidence 3444556666666666666666666666666666666666666666555544433
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.45 E-value=5.9 Score=36.17 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
+.+++++.++..++.+..+...|.+++.+++++...++.+...+
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333333333
No 103
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=90.38 E-value=2.9 Score=32.47 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.+++|...|..|..+...|..++..|+.+......|-..-.++|..+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666665555555555544444444433
No 104
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.37 E-value=2.1 Score=46.40 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+.+.|..-++.+.++...+..|++|...++.++..|.++...|+.||..|+.+|..+...+.+..
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33334444455666677788888888888888888888888888888888888888776555444
No 105
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=90.32 E-value=1.5 Score=36.75 Aligned_cols=43 Identities=35% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
|+-|-...+.+|+.|+.+|..|..++..|+.+++.-+.|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555444444444
No 106
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=1.8 Score=44.41 Aligned_cols=60 Identities=22% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
-|.|.+++++.|....+.|++.-++|+.-.+.|+++.+.|+.|...|...+.-+.....+
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345778888888888888888888888888888888888888888888887777665555
No 107
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.20 E-value=2.2 Score=47.44 Aligned_cols=6 Identities=33% Similarity=0.673 Sum_probs=3.3
Q ss_pred HHHHHH
Q 016555 297 SRLRKQ 302 (387)
Q Consensus 297 SR~RKq 302 (387)
||.|++
T Consensus 543 ~r~r~~ 548 (697)
T PF09726_consen 543 CRQRRR 548 (697)
T ss_pred HHHHHH
Confidence 555554
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.18 E-value=4.6 Score=37.60 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
..+.+|+..++.+...|+.|..|+..|+-++..|+..+..|..+=..++..+
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555554444444443
No 109
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.18 E-value=3.3 Score=41.64 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
.+++.|..++..+..++..++.++..|+.++..|+.+.+.+.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544444444444444444433333333
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.17 E-value=1.9 Score=37.89 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
+..++..|+.++..|+.+-..|..+|-.|..++
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444
No 111
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.17 E-value=1.9 Score=34.41 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSE-------KLRQENAALLVCHINVIIF 353 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~-------~L~~EN~~Lr~~L~~l~~~ 353 (387)
.+..|+.+++.|..++......+..|..+.+ .+-.+|..|++++..+..+
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444445544432 2234455555555555444
No 112
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.85 E-value=3.4 Score=47.77 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 294 ARRSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV-~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.++++.+....+.+++.+. +.|..+..++..+++.|+++++.|+.++..|++++..+.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555554 444455555555666666666666666666666665543
No 113
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.75 E-value=0.42 Score=37.29 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 317 DENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 317 ~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
.|...|+.+|..|.+++.+|+.||..||..+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666777777777777788888887654
No 114
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.63 E-value=2.9 Score=40.45 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
|+.+.+.+.++...|+.+++..+.+++.+..++..|+.+.+.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444444444444444444444443
No 115
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.62 E-value=5.6 Score=40.18 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~ 327 (387)
|..++..+..++...+.++.
T Consensus 209 lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 116
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=89.61 E-value=1.8 Score=36.24 Aligned_cols=39 Identities=31% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhh
Q 016555 314 SLIDENASLKSEINQLSEN------SEKLRQENAALLVCHINVII 352 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee------~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-|..+|..|+.+|+.|+.+ ..+...||-.|++++..+..
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666653 44566777777777776543
No 117
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.50 E-value=4.4 Score=38.25 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
-.+.++....+-+..+.+.+++...|+.++..-+.++..|..++..|+.++..|
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666655544434444333333333333333
No 118
>PF15058 Speriolin_N: Speriolin N terminus
Probab=89.46 E-value=0.94 Score=43.05 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|.|.++++.|-.||++||+++..++ ||..||.-|.+...
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir--------EN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR--------ENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHhhc
Confidence 47788889999999999998887665 56777766655544
No 119
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.31 E-value=2.2 Score=33.01 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
+++||.++..|+.....|+.+++.|++.++.|..-...|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555555555555555444444333
No 120
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.25 E-value=5.5 Score=40.12 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
+++++|+.+.+.|.+|...|..+...|
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 121
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.25 E-value=2.7 Score=48.04 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSEN---------------SEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee---------------~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
+.|+.+|+.|+..+.+|...++.|+.| ..+|+.+|..||+-|-++..-.+.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ 393 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSAS 393 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 334455555555555555555555553 345677777777776666554333
No 122
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.25 E-value=6.6 Score=37.05 Aligned_cols=53 Identities=25% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+....+.+|+.++..|+.+.+.|..+.+....++.+|..+...|.+++....
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777666666666666666666666666666666543
No 123
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.24 E-value=3.4 Score=33.29 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-|.+.|..|..+-+.|......+...|..|+.++..++.++..|+.++.....
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777667777777777666666666666666665544
No 124
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=89.14 E-value=4 Score=37.57 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
|..+|+.|+.+|..|..++..+..+...|......|+.++..+
T Consensus 94 L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 3444444444444444444444343334444444444444433
No 125
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.98 E-value=8.7 Score=36.35 Aligned_cols=43 Identities=30% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.+..++..++.+...|+-+.+.|.+++.+|..|-..|..++..
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555555444443
No 126
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.90 E-value=1.7 Score=43.85 Aligned_cols=73 Identities=23% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 278 ERELKRERRKQSNR-----ESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 278 E~e~KR~RRk~rNR-----ESARRSR~RK-q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
|-|.|=++=++.|. .++-....-- |..+++|+..+.+|+.++.+...+++++++.+..|+.|...|+++|.+.
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555553 2232222222 4556666666677777776666677777788888888888888888654
No 127
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.82 E-value=2.8 Score=45.43 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=39.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 285 RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++.+|+.+...+|.+|.+
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444555555533323455666677777777666666666666666666666666666655444
No 128
>PRK02793 phi X174 lysis protein; Provisional
Probab=88.59 E-value=3.1 Score=33.35 Aligned_cols=53 Identities=17% Similarity=0.003 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
..|+.|+..|+....-+..-|+.|.+.+.+...++..|+.+|+.+...+....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45889999999999999999999999999999999999999998877666543
No 129
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=88.54 E-value=0.24 Score=42.39 Aligned_cols=47 Identities=36% Similarity=0.487 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.+++.|...+..|..+|..|+.++..|+.++..++.+...|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 68889999999999999999999999998888888888888777643
No 130
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.53 E-value=3.1 Score=32.27 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+++.|..+.+.|..++..|..+...|+.+....+++..+.-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888778888887777777777777777776665543
No 131
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.47 E-value=3.8 Score=38.40 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++.....+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~ 168 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888777766666555444433
No 132
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.41 E-value=3.4 Score=38.71 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 016555 304 EAEELSRKVDS 314 (387)
Q Consensus 304 ~~eeLe~rV~~ 314 (387)
.+++|+.+++.
T Consensus 84 ~i~~l~~~i~~ 94 (188)
T PF03962_consen 84 KIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 133
>PRK04325 hypothetical protein; Provisional
Probab=88.41 E-value=3.2 Score=33.44 Aligned_cols=55 Identities=13% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
.+..|+.++..|+....-+..-|+.|.+.+.+...++..|+.+|+.+...+....
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999999999999999998877665543
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.40 E-value=1.9 Score=39.14 Aligned_cols=49 Identities=29% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~--~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.+|+.++..|+.++..|+.++..|.... +.|..++..|+.++..+...
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444432 44444455555554444443
No 135
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.37 E-value=3.2 Score=32.82 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
|+.++..|+....-+..-|+.|.+...+...++..|+.+|+.+...+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888888888888888888888888877765554
No 136
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.36 E-value=1.8 Score=33.41 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|++.|+.+...|...+..++.+++.|+.++..|.+-++.+..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666655543
No 137
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.30 E-value=1.9 Score=33.55 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
+.++++.+|+.+++.|+.+|..|+.+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666665
No 138
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=3.7 Score=33.35 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++.+||.++..-+.-..+|...+.+.+...++++.+.+.|-++|+.+..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56778888888777777778777777777777777777777777776644
No 139
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.12 E-value=2.5 Score=46.18 Aligned_cols=48 Identities=23% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.++-+||.+.+.|..|..++..++++|++.+.+-..|..+|+.++++.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 467777777777777777777777777777766666666666665553
No 140
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=88.11 E-value=2 Score=37.52 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.|+.+|.+|.+++..|+.||.-||
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555665555
No 141
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.08 E-value=6 Score=39.78 Aligned_cols=14 Identities=14% Similarity=-0.223 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhhh
Q 016555 339 ENAALLVCHINVII 352 (387)
Q Consensus 339 EN~~Lr~~L~~l~~ 352 (387)
|...|++++..+..
T Consensus 277 Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 277 EVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555444433
No 142
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=88.00 E-value=1.6 Score=37.73 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.|...+..|..++..+.+++++|+.++..+.++++.+.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 143
>PF15294 Leu_zip: Leucine zipper
Probab=87.90 E-value=1.6 Score=43.51 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|..++..|+.||..|+.++..|+.++.....|...|..+|.++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999998876
No 144
>PRK00846 hypothetical protein; Provisional
Probab=87.82 E-value=3.6 Score=33.72 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+.|+.|+..|+....-...-|+.|.+.+.+...++..|+.+|+.+...+....
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999999999999999998888766654
No 145
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.76 E-value=4.1 Score=32.01 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
..++...+..|..+.++++....++..|..|...|+.+++++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456677777777777777777777777777777777654
No 146
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.72 E-value=11 Score=36.77 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
.+..|+.++..|+..|..|...|..|
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHH
Confidence 33444444444444444444444433
No 147
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.64 E-value=5.7 Score=31.19 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
.-...++.+++.-+..|..|..+|..|+++.+.+++
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556778888888888888888888888777665
No 148
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=87.64 E-value=2.8 Score=39.27 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++=+.+.+.|..-|.-|+.+++.....++.|..++..|...+..+
T Consensus 70 eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 70 EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555555555555544444443
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.35 E-value=4.3 Score=41.36 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
..|...+...+.+|..|..++..|++++..+..++..||++|..+.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 4555666667777777777777777777777777777777766653
No 150
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=87.24 E-value=12 Score=32.34 Aligned_cols=66 Identities=21% Similarity=0.075 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 281 LKRERRKQSNRESARRSRLRKQAE-AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~-~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
..+.+|++-.+..+-..-...-.+ ...+-..+..|..+...+.++++.|..+...|++|+..|++.
T Consensus 20 ~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 20 RVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444455555444433332221 122334444555555555555555555555555555555555
No 151
>PRK00295 hypothetical protein; Provisional
Probab=87.23 E-value=4 Score=32.38 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
|+.++..|+....-+..-|+.|.+.+.+...++..|+.+|+.+...+...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888888888888888888888888887766554
No 152
>PRK09039 hypothetical protein; Validated
Probab=87.20 E-value=8.3 Score=39.31 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..+..|.++++.|+.+...|..+|..++++....+.+...|..+|...
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444444444444444443
No 153
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.11 E-value=6.8 Score=41.24 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
|+.+++.|+.++..+..++..|.+++..+..+
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=3.9 Score=44.90 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 288 QSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 288 ~rNRESARRSR~RK-q~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
..+|..+.+.+..+ +.+..+|+.++++|+.++..|+.++.+++
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433332 24455566666666666666666655544
No 155
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.02 E-value=9.5 Score=36.41 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
-|.||..+.+ ...++..|+.+=..|..++-.+...|..|+.|+..|+.+..++.
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555443 56777788888788888888888888888888888887766553
No 156
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.02 E-value=10 Score=34.56 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.++.+++.++.....+.+++..|.+++.+++.+...++.+++++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555666666665555
No 157
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.96 E-value=7.3 Score=35.94 Aligned_cols=39 Identities=31% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 315 LIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 315 L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
++.++..+..|++.|++++++.+.|.+.|+.|.+.+..+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667788888888888888888888888888877544
No 158
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.91 E-value=2.3 Score=33.07 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
+..+..++..|+.+++.|+.++..|+++.+.|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555544444
No 159
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.73 E-value=6.2 Score=34.34 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
..-++.-.|...-|+..=..+-++|+..+..|++++..+.+++..|+.++..++....
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555666666666666666666666666666555554443
No 160
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.69 E-value=9.5 Score=31.77 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLI-----DENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 303 ~~~eeLe~rV~~L~-----~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.++..||.+++.-- .....|..++..|+.+...|..+|..|+.+|.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566665554322 24456777888888888888889999988875
No 161
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.68 E-value=5.9 Score=37.13 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
.-+..+.+|+.+.+.|+.+...|+.+++.+.+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666666665554443
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.63 E-value=15 Score=37.05 Aligned_cols=9 Identities=22% Similarity=0.139 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016555 338 QENAALLVC 346 (387)
Q Consensus 338 ~EN~~Lr~~ 346 (387)
.|...|..+
T Consensus 113 ~e~~sl~~q 121 (314)
T PF04111_consen 113 EERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 163
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.54 E-value=14 Score=36.02 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.+.+..|+....+++.+..+.++...+|..|...|++++.++..+
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555544
No 164
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.46 E-value=3.3 Score=42.98 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
+.|..-|.|-.+--.+.+..++++..|...|+.+++++......|..|+..|++-++.+...+.-
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 44555566666666677778888888889999999999888889999999999888876554433
No 165
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=86.39 E-value=9 Score=28.61 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 320 ASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
..|..++..|..++..|..++..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 166
>PF15556 Zwint: ZW10 interactor
Probab=86.32 E-value=13 Score=36.06 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=36.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 287 k~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.++|.+...-.++...++..|.....+++..-..-+++++.|..++..|+.+-..-+++|.+
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR 180 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQR 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455666666555555555556666666666666666665555666654
No 167
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=86.13 E-value=2.7 Score=44.10 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=11.9
Q ss_pred CCCCCCCC-CCcccCCCCC
Q 016555 69 PMMPPYGA-PYAAIYSTGG 86 (387)
Q Consensus 69 pmmpPyGt-Py~a~yp~gg 86 (387)
+.+-|.|+ .|-.+|.-++
T Consensus 70 ~~en~s~~~~~~~~~~~~~ 88 (411)
T KOG1318|consen 70 QLENPSGYHIQQTIRGSEG 88 (411)
T ss_pred cccCCCCccceeeeecccc
Confidence 36666675 5667777776
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.12 E-value=9.7 Score=37.77 Aligned_cols=76 Identities=20% Similarity=0.113 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEE---------LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~ee---------Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
-.+..+.++++...-+.+. ..|++.+.. ++..+.....+|..+..++..-++.++.|+.++..|+++++
T Consensus 140 ldel~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555443 333333322 34456677789999999999999999999999999999998
Q ss_pred hhhhhhh
Q 016555 349 NVIIFWT 355 (387)
Q Consensus 349 ~l~~~~~ 355 (387)
.+.....
T Consensus 218 ~L~~~~~ 224 (258)
T PF15397_consen 218 QLQAQAQ 224 (258)
T ss_pred HHHHhhc
Confidence 8866433
No 169
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=86.06 E-value=2.9 Score=44.66 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++++.|+++++.|.++++.|.++|+.|+.++++|+.+...++.++....+
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~~ 132 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATG 132 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence 355667777777777888888888888888888888888777776554433
No 170
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.01 E-value=12 Score=33.74 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe-------~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
+++.+++..-+.+.+.-.+|++.++.|+ .+|+.|+.+...+..++..++.+++
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666664 2555555555555555555554433
No 171
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=85.90 E-value=0.82 Score=33.75 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
..|-..|..|..++..|..++..|..||..||+++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 33444566666666666666666777777776654
No 172
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=85.89 E-value=1.3 Score=45.22 Aligned_cols=17 Identities=47% Similarity=0.610 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEINQL 329 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L 329 (387)
..|++||.+|+.|+++|
T Consensus 42 ~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 173
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=85.88 E-value=4.2 Score=32.99 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
.+++..++.|+.||=.|+-+|-.|.+..
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3556667777777777776666665543
No 174
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=85.81 E-value=13 Score=33.16 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.++.++..|---+..|...+..+|.+|+.+-.
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 34444444444455556667777777776643
No 175
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=85.75 E-value=3.2 Score=42.74 Aligned_cols=105 Identities=26% Similarity=0.401 Sum_probs=62.2
Q ss_pred CCCCChhhhhhccCCCCC--CCCCC-CCCCCCCCCCCCCCcCCCCCCCCCCCC--CCcc--------cCCCCCCCCCCCC
Q 016555 27 HMYTDWAAMQAYYGPRVA--IPPYY-NSPIASGHAPQPYMWGPAQPMMPPYGA--PYAA--------IYSTGGVYAHPAV 93 (387)
Q Consensus 27 ~~ypdWs~~QaYygp~~~--~pp~f-~s~vas~~~phPymWg~~qpmmpPyGt--Py~a--------~yp~ggvyaHP~~ 93 (387)
|.-.|-+.+|.-|-|..+ +.||| +++-|-+.-|||--|= --|+|+||. ||++ +-||-.+-.||..
T Consensus 72 ~~p~dis~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~wp--~y~~pt~~~~~p~p~~~~asmsrf~ph~~~p~~p~~ 149 (421)
T KOG3248|consen 72 PLPADISPKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGWP--VYPIPTFGFRHPYPGVVNASMSRFSPHHVEPGHPGL 149 (421)
T ss_pred CCcccccccCCCCCCCCCccccccccCCccccccCCCccCCc--cccCCCCCCCCCCchhhhhhhhhcchhccCCCCCCc
Confidence 344678889976655433 24555 4555667789999992 346688888 7884 3356667788877
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCcC--CCCCCCCCCcccchhh
Q 016555 94 PLGSHAHNHGVPTS---PAAVTPLNTE--APTKSSGNADRGLAKK 133 (387)
Q Consensus 94 p~~~~p~~~~~~~s---p~~~tp~s~e--~~~k~~~~~~~~~~Kk 133 (387)
....+||..-++|+ +....+.+.. ..+|..+.+.+--|||
T Consensus 150 ~tagiPhpaiv~P~~kqes~~~~~nvk~~~~~k~e~e~KkphiKK 194 (421)
T KOG3248|consen 150 HTAGIPHPAIVTPPVKQESDSAPQNVKRQAESKKEEEAKKPHIKK 194 (421)
T ss_pred cccCCCCccccCCcccCcccccccccchhhhccccccccCccccc
Confidence 77777775544443 1122233333 2444444434444554
No 176
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.73 E-value=23 Score=30.85 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=35.3
Q ss_pred HhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 289 SNRESA-RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 289 rNRESA-RRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.||.++ .++..--|.-.++|..+.+.|+.-++.|+.+...+.+.+..|.++...++..|..
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 3444445555556666666666666666666666666666666666666655554
No 177
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.70 E-value=9.7 Score=41.86 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 291 RESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
|++.+.-=..-+....+|..+++++....++|++.|.+-+.++.+|+.+.++-..+++++......
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~p 153 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNP 153 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 344443333333344566777777777777777777777777777777777777777776554433
No 178
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.68 E-value=9.2 Score=38.81 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.++-+|+.+++.+..||.+|...+...++--..|.+|+..|+++..+..+-
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777777777777777777777665443
No 179
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.60 E-value=4.7 Score=33.74 Aligned_cols=12 Identities=33% Similarity=0.363 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLI 316 (387)
Q Consensus 305 ~eeLe~rV~~L~ 316 (387)
+++|..+...+.
T Consensus 45 ~e~lr~~rN~~s 56 (108)
T PF02403_consen 45 LEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH
Confidence 333333333333
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.44 E-value=3.8 Score=40.18 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.-=+.++++|+.+|..|+-+++++.-+++.|+++-..|-.+.+.+..+++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45588999999999999999999999999999998888888887766553
No 181
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.29 E-value=5.4 Score=37.98 Aligned_cols=15 Identities=40% Similarity=0.466 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDE 318 (387)
Q Consensus 304 ~~eeLe~rV~~L~~E 318 (387)
++++|..-+..|+.+
T Consensus 68 EledLk~~~~~lEE~ 82 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444333333333
No 182
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.27 E-value=12 Score=31.22 Aligned_cols=13 Identities=23% Similarity=0.008 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 016555 336 LRQENAALLVCHI 348 (387)
Q Consensus 336 L~~EN~~Lr~~L~ 348 (387)
|..|...|+++|.
T Consensus 72 l~~e~~~lk~~i~ 84 (108)
T PF02403_consen 72 LKAEVKELKEEIK 84 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 183
>PHA03162 hypothetical protein; Provisional
Probab=85.27 E-value=0.33 Score=43.44 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
+++.-+|+|+.++..|+-||..|+.+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667799999999999999999999994
No 184
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=85.25 E-value=5.7 Score=35.04 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
..|-|.--..++..|+.++..|..|--.=-++++.|=.++++|+.++..|++-|..+...+..-+
T Consensus 5 l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGl 69 (120)
T PF10482_consen 5 LNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGL 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455566777777777777766555556666666666677777777777666655554444
No 185
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=85.18 E-value=11 Score=37.35 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQ 302 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq 302 (387)
|++.|-..|++.-+.---+|-+|-|
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ 35 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQ 35 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333333333
No 186
>PF14645 Chibby: Chibby family
Probab=85.18 E-value=3 Score=36.47 Aligned_cols=45 Identities=24% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
.....|.++.++|+.||.-|+-+++.|-.-+....+|...+..+|
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666778888888888888888777777777766666554
No 187
>PHA03155 hypothetical protein; Provisional
Probab=85.14 E-value=2.7 Score=36.87 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
-+|+|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999999965
No 188
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.10 E-value=7.7 Score=43.49 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
++.+.|..|...+++++..++...++|...++.|+.+|.+++.
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3566777788888888888888888888888888888888773
No 189
>PF14282 FlxA: FlxA-like protein
Probab=85.10 E-value=4.6 Score=34.45 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 304 EAEELSRKVDSLID----ENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 304 ~~eeLe~rV~~L~~----EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
.+..|+.++..|.. .......++..|+.++..|.+++..|..+........
T Consensus 27 Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 27 QIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555665555 2244556666777777777777777776666554433
No 190
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=85.06 E-value=4.3 Score=35.48 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
|=.+|..|+.....|.+++..|++....|..||..|+-+.+.+...+..
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4456888888888888999999999999999999988777776665554
No 191
>PRK00736 hypothetical protein; Provisional
Probab=84.98 E-value=6.1 Score=31.36 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++.++..|+....-+..-|+.|.+.+.+-..++..|+.+|+.+...+...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888888888888888888888888887766554
No 192
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.87 E-value=4.6 Score=38.46 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
.|..++..|+.||..|..+...|+.+...|-.++..|+.+|
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 44455555555555555555555555555555555555554
No 193
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=84.82 E-value=17 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=53.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 285 RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.++...++..+..=..|+..+..|+.++..|..|...-.+++-.+.+..+.|..|+..|+..+..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35566677777777889999999999999999999988888888888888888888888776654
No 194
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.77 E-value=15 Score=36.61 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
-=+.+++.|..+|+.+..+...++.++.+++.++..|..|+..|++.|.+...-+..+.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888888888877655544444
No 195
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=84.58 E-value=28 Score=36.82 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
+.+++.+.+.|+..|+.|..++++|+.++
T Consensus 292 ~~E~~~rqk~le~~n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 292 ARELENRQKKLESTNQELALRIEELKSEA 320 (411)
T ss_pred HHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 196
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=84.57 E-value=1.1 Score=33.17 Aligned_cols=43 Identities=30% Similarity=0.508 Sum_probs=11.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
++++...||+-|+..-... ..+.+|+.++..|..||..|+.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3567778888887755443 456777777777777777777665
No 197
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=84.52 E-value=0.88 Score=40.12 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
|..-+|+|+.++..|+-||..|+.+|..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44568999999999999999999998753
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=8.9 Score=43.52 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=46.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
...++-..=.--+++-...++.|.+.+..|+.||.+|..+++.+..+..+|+.++..|+.+|.
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444555566667788888888888888888888888888888888888888888877
No 199
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=84.36 E-value=2.7 Score=45.93 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
.+|-.+|++|.-|+..|+.++...++-..+|+..+..|.++|+.+..+..+.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999998888777777777777877777776665554
No 200
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.30 E-value=15 Score=40.04 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
+++.|+.+.+.|...+..|..+...|
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333333
No 201
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=84.22 E-value=6.7 Score=32.69 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
++.|...++.|..-...|.++...|..++..|...|++.|.++++...
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444444444455555666777766666543
No 202
>PRK14127 cell division protein GpsB; Provisional
Probab=84.07 E-value=2.3 Score=36.94 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
+.++++...++.|..||..|+.++.+|++++..++.+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666666666666666665555544444333
No 203
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.03 E-value=3.7 Score=41.67 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSE 325 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~e 325 (387)
.+++-+..++..|..+|..|+..
T Consensus 41 ~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 41 RELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 204
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=84.02 E-value=3.3 Score=31.60 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++.++++|+.++..=+ +.=...-...+.++.+|+.||..|+++|..+
T Consensus 2 w~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 2 WLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443321 1111122334445555566666666666543
No 205
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.88 E-value=17 Score=38.68 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+-.+.+..+..+|+.++..|..+.+.|+.+...|+.+|..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 131 QAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444445555555555555555555555555555554433
No 206
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=83.78 E-value=11 Score=32.60 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 275 ~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
+.+|++.+.++|..+||||-|. |+..+-.+..+-..|..+|.-+.++-
T Consensus 48 MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qq 95 (121)
T PF10669_consen 48 MKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQ 95 (121)
T ss_pred HHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHH
Confidence 4578888888899999998654 23333333333333555665555443
No 207
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=83.45 E-value=3.4 Score=31.54 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
..-.....++..|+.||..|+.++..++.
T Consensus 22 ~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 22 LDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456678889999999999999887754
No 208
>PRK11546 zraP zinc resistance protein; Provisional
Probab=83.39 E-value=5.4 Score=36.31 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+=...+++|.+++-..+.|.+.|...-.-=.+.+..|..|+..|+.+|.+++-
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444332221233344455555555555554433
No 209
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.25 E-value=18 Score=36.16 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+++.++.++.+.+.+..+++.++...+.++..|+.+-..|...|..
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555544443
No 210
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.24 E-value=3.5 Score=41.77 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
|..++..-.+++.....|+..|..+|..+...
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r 249 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQR 249 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 211
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.20 E-value=13 Score=39.51 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLF 359 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l 359 (387)
+..|.+-...+..++..|..+...|+.+.+.|+++|..+..++....-
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455667777777888888888888999999999999988887766653
No 212
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.12 E-value=27 Score=34.21 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..++.|+..++.++..|+.++..|+..|..|..+|..+..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 44555555556666666666666666666666665555443
No 213
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.09 E-value=4.2 Score=32.44 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
....+++.++++++.|+.||..|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556666666666666666666666554
No 214
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.08 E-value=13 Score=34.24 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.++.++..|..++..|+.++..|......+.+++..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~r 121 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSR 121 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 5667777777777777777666666555444444433
No 215
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.89 E-value=6.3 Score=43.24 Aligned_cols=45 Identities=31% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
++++|..+++.++.+...|..++..+.++.+..+.++..|.+++.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555544
No 216
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=82.85 E-value=6.9 Score=33.58 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 289 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 289 rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
.-||.|+.-+-=++.+.|.|+.-.+.|+.|...-+++|+.|++++
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346667766666666666666666666666666666666665543
No 217
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.82 E-value=9.4 Score=36.36 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEA----EELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~----eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
|+-.+|.||-+..+.++=.-+-+=-+++ ...-.++..|+..|+.|..+.++|+.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888777654333322221 22223445555555555555555444
No 218
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.78 E-value=13 Score=43.05 Aligned_cols=55 Identities=25% Similarity=0.214 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
++..+.+.|+-++++|+.+...++.++..+..++..|..|+..|+.+|.......
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 3344556666777777777777777777777777777777777777766654433
No 219
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=82.74 E-value=2 Score=36.34 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
.|+.+++.|..+++.|+.+|..|..+|..+++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566677777777777777777777766553
No 220
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.63 E-value=5.8 Score=35.08 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
|..-+++|+.+++.|+.+...|..+...|+++++.|+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444444444444443333
No 221
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=82.48 E-value=13 Score=35.58 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 016555 335 KLRQENAALLVCHINVI 351 (387)
Q Consensus 335 ~L~~EN~~Lr~~L~~l~ 351 (387)
.++..+..|+.+|.++.
T Consensus 193 eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 193 EIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 222
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=82.46 E-value=2.8 Score=37.18 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 323 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~ 323 (387)
|..|..|+.++||.+++ +++++|+.+++.|+.+.+.+.
T Consensus 95 E~~Rs~~ke~~Ke~~~~------~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQ------ERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 45566666555555433 555666666666665555443
No 223
>smart00340 HALZ homeobox associated leucin zipper.
Probab=82.42 E-value=3 Score=30.75 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 327 NQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+-|++-|+.|..||+.|+.+|+++..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666665544
No 224
>PRK03918 chromosome segregation protein; Provisional
Probab=82.37 E-value=14 Score=41.13 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=9.8
Q ss_pred CCcccccCCCCCCCC
Q 016555 138 DGLAMSIGNASAESA 152 (387)
Q Consensus 138 ~Gl~ms~g~~~~~~~ 152 (387)
.|+++++|.+-+||+
T Consensus 23 ~g~~~i~G~nG~GKS 37 (880)
T PRK03918 23 DGINLIIGQNGSGKS 37 (880)
T ss_pred CCcEEEEcCCCCCHH
Confidence 367777776666553
No 225
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=82.16 E-value=4.8 Score=41.78 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|+.+++.|+.++..|..++.. ++.|...|+++|..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKN-------LKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 334444444444444444444 4444445555555543
No 226
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.09 E-value=19 Score=30.70 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 302 QAEAEELSRKVDSL--IDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 302 q~~~eeLe~rV~~L--~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..++..||.+++.| ..+...|+-++.+++-++..|..+.+.+..++.-+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777 66666677777666666666666666665555443
No 227
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.04 E-value=8.8 Score=41.87 Aligned_cols=47 Identities=30% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.|+.+++.+-..++.....|+.++....+|++.|+.+|..|+.+|+.
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666667777777777777766654
No 228
>smart00340 HALZ homeobox associated leucin zipper.
Probab=81.99 E-value=3.4 Score=30.44 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.++-|.+-.+.|..||..|+.++++|+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777776665
No 229
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.97 E-value=8.6 Score=34.55 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
++-.+|..|..++..|+.+...|..++..++..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666555443
No 230
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.96 E-value=18 Score=38.87 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L 329 (387)
.|+.++..++.++..|..++..|
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l 86 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333333
No 231
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.88 E-value=13 Score=37.23 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEIN---QLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~---~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+---++++++++++.-..|.-|..++. .|-+..++|+.|-+.|+++|.
T Consensus 131 ti~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666654 244455555555555555554
No 232
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=81.78 E-value=6.9 Score=34.95 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
-+...+.-+..|+.||.-|+..+-.+++.++.=+.....|+++|+..
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555667889999999999999999999999999999999999753
No 233
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=81.76 E-value=1.5 Score=39.99 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 305 AEELSRKVDSLIDENASLKS-----EINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~-----el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+|+.++.+|++|...+.. +-..|++++++|+.|.+.+++++..
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444321 2334555555555555555555544
No 234
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.70 E-value=14 Score=38.19 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 327 NQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+.|+.-...++.||..|..+|.++..+.
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455556667788888887777765543
No 235
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.65 E-value=8.3 Score=33.29 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+.|...+..|+.++..+..+++.|++++.++..|...|+.++
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346667777777777777777777777777777777777765
No 236
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.57 E-value=4.8 Score=41.31 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
..|+.++..|+.+++.|+.++..|..+.+.++.+...|+++|..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555556666666666665544
No 237
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.46 E-value=34 Score=31.03 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 016555 279 RELKRERRK 287 (387)
Q Consensus 279 ~e~KR~RRk 287 (387)
.++||.+|.
T Consensus 10 ~kLK~~~~e 18 (140)
T PF10473_consen 10 EKLKESESE 18 (140)
T ss_pred HHHHHHHHh
Confidence 444444443
No 238
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.41 E-value=2 Score=33.60 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+++-|..++..|+.+|.+|..|...|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 239
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=81.39 E-value=21 Score=36.51 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAE 304 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~ 304 (387)
..+++|+++++|...-..=.||..+
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE 144 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLE 144 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777887766555555433
No 240
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=81.37 E-value=5.6 Score=43.27 Aligned_cols=50 Identities=14% Similarity=0.359 Sum_probs=31.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDE-------NASLKSEINQLSENSEK 335 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~E-------N~~L~~el~~L~ee~~~ 335 (387)
...+++--+|...+-+++.+++++++++.|+.. ..+.+++++.|+.+...
T Consensus 174 k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 174 KAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666676778889999999888874 22344455544444443
No 241
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.33 E-value=17 Score=38.48 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
+++.++|..+..|+.||..|..+.-
T Consensus 48 a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 48 AKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544443
No 242
>PRK14160 heat shock protein GrpE; Provisional
Probab=81.32 E-value=6.3 Score=37.92 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+..|+.++..|+.++..|+.++..|+.++.++.++...+|.+..+
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666655544
No 243
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=81.28 E-value=4.6 Score=36.17 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.-++.|+.|...-..+|..|+++++.+...|..|.
T Consensus 94 ~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 94 IVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444443
No 244
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.16 E-value=17 Score=43.95 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 283 RERRKQSNRESARRSRLRKQA-------------EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~-------------~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+.+.+.++.|++.+.-+++ .+++|+.+++.++.+...++.++..+++++..++.+...|+.++.+
T Consensus 322 rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae 401 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666665443322 2233333333334444444444444444444444444444444443
No 245
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=81.12 E-value=17 Score=34.68 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|++|. +++.-.+-..|.-..-+++...|+..++.-+.+-+....+-..++++...|+.|...++.+|..+..
T Consensus 104 eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 104 EIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3555556666666666777777777776666665555555555556666666666666666555544
No 246
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=80.86 E-value=10 Score=33.72 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+|+.++..|+.|+..+..-...|...+..|+-.+.+.+.++..+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45666677777777766666667777777777777777777766443
No 247
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=80.52 E-value=6.1 Score=31.49 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+..++..++++.+.++.||..|+.++..
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 248
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=80.48 E-value=15 Score=35.64 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 291 RESARRSRLRKQAEA----EELSRKVDSLIDENASLKSEINQLSENSEK 335 (387)
Q Consensus 291 RESARRSR~RKq~~~----eeLe~rV~~L~~EN~~L~~el~~L~ee~~~ 335 (387)
-+|+-..-+||.-.. ..++.+++.|+.++.+|..+|..|+.+++.
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~ 217 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLET 217 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 466666666665433 345566777777777777776666554443
No 249
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=80.45 E-value=5.5 Score=42.41 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|+.|+.....-.++.++|+++.+.|+.+|..|.++|+.+..
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 66777777777788889999999999999999999987744
No 250
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.45 E-value=16 Score=43.42 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
.|+.+++.|..++..|+.++..+.+++..|.
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444444444444444433333333
No 251
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.41 E-value=5.8 Score=42.36 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKS 324 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~ 324 (387)
++.|..+-+.|++||+.|++
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 75 LAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554
No 252
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.31 E-value=21 Score=37.45 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|+.++..|++++..|+.+...|.++|.+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 253
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=80.27 E-value=7.1 Score=33.34 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
.+|..+++..+.|-.-|+..+..|..+++.|+.|...++.++
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666666666666655555555555555544
No 254
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=79.99 E-value=19 Score=34.13 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.++.|+.+++.++.....|+.++..|+.++..++..-..|..++...
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666666666666555555443
No 255
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.96 E-value=19 Score=34.31 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 291 RESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
=|.+.+.|....++.++|..+...|+.+.+.|+.++..+++..-+...+...+.....+....++
T Consensus 104 ~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwt 168 (203)
T KOG3433|consen 104 IENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWT 168 (203)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555555555566666666666666666666666655544444444455544444444333
No 256
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=79.95 E-value=6.1 Score=33.23 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 304 EAEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN-~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
|-..=+.+|..|+.-- .....++..|+.++..|..||..|+.+|.....+.
T Consensus 28 YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 28 YSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677776322 23556777777777777777877877777655443
No 257
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=79.95 E-value=11 Score=35.51 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.+|++++++-+.+.+.++.+..+|+.+|..++
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666665555555555555544
No 258
>PRK02224 chromosome segregation protein; Provisional
Probab=79.90 E-value=18 Score=40.62 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
++.++.+|+.+++.|+.....+..++....+++..|+.+...|
T Consensus 507 ~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 507 AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444445555544444444433333333333333333333333
No 259
>PRK15396 murein lipoprotein; Provisional
Probab=79.85 E-value=13 Score=30.58 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++++|..+|+.|..+..+|...++.++........|-.+--++|..+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655555555544444444443
No 260
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.79 E-value=16 Score=41.04 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
-++..+.|.++++.++....+++..-++|....+.|+.|..+|++
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555666666666666666666666666666666666666664
No 261
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.72 E-value=24 Score=31.46 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.=.++++.|..++++..+-....+.++..++.....+..+...++..+..|.+.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334677777777777777777777777777777777777777777666665543
No 262
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.69 E-value=18 Score=41.54 Aligned_cols=67 Identities=24% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-.++.-++++.+-....++..+|..+++.|..+-..+..+.+...+.++.|+.|...|..+|+.+..
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666665555555555555566666555555555433
No 263
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=79.66 E-value=28 Score=33.24 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
...|-.-...+..||..|+.++..|.+++..|+..+..|..+-..+..
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566788899999999999999988888888888877666544
No 264
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=79.50 E-value=13 Score=33.16 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 285 RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
.|.++.|...---|.-=|++|..||.++..++.-+..|..+|..|+-.+.+.++.+..|+.
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4666677777777777788889999999999999999999999888887777777766553
No 265
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=79.50 E-value=11 Score=35.09 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016555 318 ENASLKSE 325 (387)
Q Consensus 318 EN~~L~~e 325 (387)
...+|+.+
T Consensus 58 ~~~eLKrk 65 (162)
T PF04201_consen 58 HCAELKRK 65 (162)
T ss_pred hHHHHHHH
Confidence 33333333
No 266
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.37 E-value=5.2 Score=44.64 Aligned_cols=61 Identities=20% Similarity=0.096 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+.++..-=|.+++..+.+++.++.....+..++..+.....+|+.|+..|+.+|..+....
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444556777777888888888888888888888888888888888888888765433
No 267
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.34 E-value=9.3 Score=38.63 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
-+++-|..+++.|+.....|+.++.....+++.++.....|+.++..+..++...
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777777777888888888888888888777655
No 268
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.28 E-value=22 Score=41.54 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN-~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++|..++.|+.++..++++- ..|..++.++..++..|..|+..|..++..|..+....
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666554 56666666777777777777777777777666655443
No 269
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=79.28 E-value=12 Score=37.40 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
..|-|+|.++.... -...+.....+|++++..|..++..|.++...|++++.++.....
T Consensus 207 leRkrlrnreaa~K---cr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 207 LERKRLRNREAASK---CRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHhhhHHHHHH---HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555543332 122333455677788888888888888888888877777665433
No 270
>PHA03161 hypothetical protein; Provisional
Probab=79.27 E-value=14 Score=33.87 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q 016555 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE-------NSEKLRQENAALLVCHINV 350 (387)
Q Consensus 290 NRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e-------e~~~L~~EN~~Lr~~L~~l 350 (387)
-|.+-|+.+.+|+. .+|+..|..|..+..+.++|+..|.. ..+.|......|++.|...
T Consensus 43 t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~E 108 (150)
T PHA03161 43 TKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFE 108 (150)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444 67777888888888888888887764 3344444555555555443
No 271
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=79.25 E-value=6.4 Score=37.67 Aligned_cols=28 Identities=43% Similarity=0.519 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
||..|..+|..|.+++..|+.||..|++
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554
No 272
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=79.12 E-value=1.6 Score=40.56 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 319 NASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 319 N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
-..|+.++++|+.|...|+.|+ .+++++.
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3345555555555555555555 5555544
No 273
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=78.95 E-value=0.63 Score=45.10 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
|..||++..++..|+.-...|..++++|++++++|.+||..|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666677777666
No 274
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.88 E-value=22 Score=38.01 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQA----EAEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~----~~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
-.+.|-++++++-.||.+ .+++++.+.+.++.+|..|.+...
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345566666666666554 344555666666666666655443
No 275
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=78.77 E-value=6 Score=39.38 Aligned_cols=39 Identities=33% Similarity=0.237 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 314 SLIDENASLKSEINQ---LSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 314 ~L~~EN~~L~~el~~---L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|..||+.|+.++.+ +..+.+.|+.||.+||+.|.....
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 344455555554443 345567789999999988865443
No 276
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.65 E-value=13 Score=39.33 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
++.+.+..++..++.+.+.|+.|+..|.+++-+++.+
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666655544433
No 277
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.65 E-value=19 Score=29.33 Aligned_cols=54 Identities=13% Similarity=-0.071 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
..+|++|+..|+....--.+-|+.|...+.......+.++++|..+........
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357889999999888888888888888888888888888888888877666554
No 278
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=78.55 E-value=10 Score=32.47 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
-.++..+-+-|+.|++-...|+++|+.|+.-...|...+.+
T Consensus 56 Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 56 YQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777788888888888888888888888888877754
No 279
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.45 E-value=44 Score=32.43 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
++..|+..+..++.+...+...+..|+.....|+.....|+.++..+......
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666655444433
No 280
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=78.44 E-value=20 Score=32.97 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
++-.+..+++++.|..|+-.=..|-.++.+|..++...+....++..+|.+|...+
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m 135 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQM 135 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888899988889999999999888777766666666666655443
No 281
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.23 E-value=47 Score=31.11 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.|+..++.+......|+..+..|+.++..++.+-..|+.+..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 282
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=78.09 E-value=23 Score=33.73 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=48.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSR--------------KVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~--------------rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
.|+.-|++.+-.+|...|.||- +.+|+. =+.-|+.|-..|+++++.-+.+...++.|+..+..+
T Consensus 93 qk~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~ 170 (192)
T PF09727_consen 93 QKKMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQ 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666667666654 333332 245688888888888888888888888888888888
Q ss_pred HHhhhhhh
Q 016555 347 HINVIIFW 354 (387)
Q Consensus 347 L~~l~~~~ 354 (387)
|.+-....
T Consensus 171 l~eE~~k~ 178 (192)
T PF09727_consen 171 LEEERTKL 178 (192)
T ss_pred HHHHHHHH
Confidence 77755433
No 283
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.97 E-value=8.8 Score=39.85 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
.+++.|+.+.+.|+.++..|+.++..|++++++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888889888888988888877765555
No 284
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.80 E-value=16 Score=35.62 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+-+..|+.-+..++.|....+..+.+|.+++..|+.+.+.++.+
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888877
No 285
>PRK02224 chromosome segregation protein; Provisional
Probab=77.78 E-value=22 Score=39.89 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 016555 290 NRESARRS 297 (387)
Q Consensus 290 NRESARRS 297 (387)
+|....|.
T Consensus 627 ~~l~~~r~ 634 (880)
T PRK02224 627 ERLAEKRE 634 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 286
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=77.76 E-value=7.9 Score=37.57 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
..+|.++.+.|++||.+|+.++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 287
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.64 E-value=10 Score=30.52 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
...+..|+..+..+...+..|+.+.+.+..+...|++.|.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566666666666666666666666666666666654
No 288
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.51 E-value=47 Score=29.94 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLK-------SEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~-------~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+=.-|.++..+++.++..+...+++...|+ .++..|++++..++.+...++.+
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555444443 23444444444444443333333
No 289
>PRK11020 hypothetical protein; Provisional
Probab=77.46 E-value=20 Score=31.61 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLS 330 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ 330 (387)
+.+++.|...|..+|+.|+
T Consensus 33 i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 33 YAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444454444
No 290
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.43 E-value=26 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 323 KSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 323 ~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+|..|..++..|..++..|.++|..
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 291
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=77.40 E-value=9.1 Score=39.31 Aligned_cols=7 Identities=14% Similarity=-0.178 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016555 342 ALLVCHI 348 (387)
Q Consensus 342 ~Lr~~L~ 348 (387)
.|+..|.
T Consensus 198 ~lq~~L~ 204 (342)
T PF06632_consen 198 ELQRLLA 204 (342)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 292
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=77.31 E-value=12 Score=41.48 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+|+++|+.|+.++..|+++|+.+..+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e 108 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESRERE 108 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 293
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=77.17 E-value=19 Score=33.92 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 016555 333 SEKLRQENAALLVCHINV 350 (387)
Q Consensus 333 ~~~L~~EN~~Lr~~L~~l 350 (387)
.+.++.+..+|+++|+..
T Consensus 155 ~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 155 REELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555544
No 294
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.17 E-value=23 Score=39.10 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDE------------------------NASLKSEINQLSENS 333 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~E------------------------N~~L~~el~~L~ee~ 333 (387)
+.-..+..-..+|.+.--+--..+.+++.+|+.+++.++.+ |.+|+.++.+|+..+
T Consensus 97 E~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 97 ESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 334 EKLRQENAALLVCHI 348 (387)
Q Consensus 334 ~~L~~EN~~Lr~~L~ 348 (387)
-.|..+|..|...|.
T Consensus 177 v~ltne~~elt~~lq 191 (617)
T PF15070_consen 177 VKLTNENMELTSALQ 191 (617)
T ss_pred HHHHHhhhHhhHHHH
No 295
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.83 E-value=41 Score=34.11 Aligned_cols=22 Identities=27% Similarity=0.509 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~e 331 (387)
.++..|..+-.+|-.++..|+.
T Consensus 55 e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 55 EKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 296
>PF14282 FlxA: FlxA-like protein
Probab=76.76 E-value=13 Score=31.73 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKS----EINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~----el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
..++.|+.++..|+.+...|.. -.+..+++...|..++..|..+|..+....
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544 112334444445555555555555444433
No 297
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=76.52 E-value=22 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.|+.++....+.+..|..++..++
T Consensus 30 sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 30 SLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333333333444443333
No 298
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.48 E-value=31 Score=37.77 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
+..|+.+++.++.+...+..++..+++++..++.+...|+.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333333333333
No 299
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.44 E-value=12 Score=34.04 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
++.|+.+++.|......|...+..|.+....|+.++..+..+.
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555444
No 300
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=76.38 E-value=11 Score=38.70 Aligned_cols=38 Identities=26% Similarity=0.139 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSEN---SEKLRQENAALLVCH 347 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee---~~~L~~EN~~Lr~~L 347 (387)
.....|++||++|++|+.+|+.+ ++.++.||..|+..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666665443 344556777655444
No 301
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=76.23 E-value=5.5 Score=34.66 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
|.++..+|++||.-|+-+++.|...+.
T Consensus 77 lkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888877777655443
No 302
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.20 E-value=42 Score=33.58 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+.+++.++.+..+..+++..++++...++.....|.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343434444444444444433333333333
No 303
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=76.10 E-value=15 Score=40.19 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL---S----ENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L---~----ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++++.||.+++.|+.+..+|..++..- . .+...|..|...|+.+|.++..++...
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777776666421 1 135555566666666666665555443
No 304
>PRK14161 heat shock protein GrpE; Provisional
Probab=76.07 E-value=15 Score=34.48 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
|+.-|+.++.+...|+.++..|+.++.++.+|...+|.+
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR 55 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKR 55 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433333
No 305
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.03 E-value=36 Score=36.11 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.+=+.++.+|+.++..|+.+..+....+..+++.+..+......|..+-.+.
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666666666666666666665555555555555544333
No 306
>PRK10698 phage shock protein PspA; Provisional
Probab=75.99 E-value=43 Score=32.17 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+..|+.+++.++.....|+..+..|+.++..++..-..|..+......
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666665555443
No 307
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=75.91 E-value=11 Score=38.68 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|..+++++.++..-..||.++..++++++.-|..|.....+|++.|.+
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888888888888888888888888888888888888765
No 308
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=75.71 E-value=40 Score=27.86 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.-++.|-.||+..+.||..|+.+.+.|++-+..|.+.
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666777777777777666666665544
No 309
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=75.64 E-value=43 Score=33.83 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016555 336 LRQENAALLVCHINVII 352 (387)
Q Consensus 336 L~~EN~~Lr~~L~~l~~ 352 (387)
+..||..|+++|..+..
T Consensus 133 ~~~eN~~L~eKlK~l~e 149 (309)
T PF09728_consen 133 LREENEELREKLKSLIE 149 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554433
No 310
>PRK12705 hypothetical protein; Provisional
Probab=75.55 E-value=30 Score=37.39 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKS 324 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~ 324 (387)
|+++.+.|......|..
T Consensus 93 l~~~~~~l~~~~~~l~~ 109 (508)
T PRK12705 93 LDARAEKLDNLENQLEE 109 (508)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 311
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=75.42 E-value=9.9 Score=31.28 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+...+..+++.++.+.++|..||..|+-++..+
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555555444444
No 312
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.29 E-value=32 Score=39.11 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKS---------------------EINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~---------------------el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
.++.+|..++..+..||..|.. ++..|...++.++.||..||-+|.-+..++..+
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir 167 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIR 167 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777766554 233445555556666666666665554444443
No 313
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.28 E-value=9.5 Score=43.28 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCC
Q 016555 96 GSHAHNHGVPTSPA 109 (387)
Q Consensus 96 ~~~p~~~~~~~sp~ 109 (387)
+.++=+++++|.|+
T Consensus 589 ~g~~Gg~ppPP~~g 602 (1102)
T KOG1924|consen 589 GGFLGGPPPPPPPG 602 (1102)
T ss_pred CCCCCCCCCCCCCC
Confidence 44555555555554
No 314
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.24 E-value=42 Score=33.67 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.+|+.+...|+.+|+.|+.++..+++
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Ke 80 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKE 80 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 315
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=75.08 E-value=14 Score=32.54 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhh
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE--NAALLVCHINVII 352 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E--N~~Lr~~L~~l~~ 352 (387)
+.-+..|+.-|++. +-++.++++|..++..+..+...|..++..+..++..+... -..|+.+|+....
T Consensus 37 ~~l~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 37 EELLAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 33445677777654 34456677777777777777777777777776666665322 1345555554433
No 316
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=75.08 E-value=11 Score=32.71 Aligned_cols=44 Identities=18% Similarity=-0.000 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
-....+-.....|..++..++.+++.|.++|..|++++..+...
T Consensus 43 ~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 43 WFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555667777888888888888888888888888888765
No 317
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=75.07 E-value=18 Score=36.72 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSE 325 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~e 325 (387)
+|+.+++.++.+...+..+
T Consensus 38 ~l~~~~~~~~~~~~~~~~~ 56 (378)
T TIGR01554 38 ELETDVEKLKEEIKLLEDA 56 (378)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333
No 318
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.07 E-value=30 Score=40.63 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
.++..|+.....|+.++..+.+++..++.+...++.+
T Consensus 446 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1163)
T COG1196 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 319
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=75.05 E-value=50 Score=34.97 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016555 322 LKSEINQLSENS 333 (387)
Q Consensus 322 L~~el~~L~ee~ 333 (387)
|+.++..|.+++
T Consensus 149 lqtrl~~l~~qr 160 (499)
T COG4372 149 LQTRLKTLAEQR 160 (499)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 320
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.99 E-value=21 Score=39.90 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 342 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~ 342 (387)
+..|+.++..|+++...|+.++..+.++++.+..++..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 280 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNT 280 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544444444333333
No 321
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.86 E-value=9.7 Score=39.22 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSL 315 (387)
Q Consensus 303 ~~~eeLe~rV~~L 315 (387)
++.++|..+|++|
T Consensus 46 kEN~~Lk~eVerL 58 (420)
T PF07407_consen 46 KENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 322
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=74.85 E-value=15 Score=37.96 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQ---LSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~---L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++++.|+.+++.|+.+..+|..+++. .+.+...|..+.+.+..+|.++
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666555332 1223344444444444444443
No 323
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=74.53 E-value=36 Score=34.95 Aligned_cols=47 Identities=30% Similarity=0.427 Sum_probs=31.0
Q ss_pred HHHHh--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSN--RESARRSRLR------KQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 286 Rk~rN--RESARRSR~R------Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
|+++| +|-||-+-.| =+.+-+.+|.++..|+.+|.-+..+-+.|+.+
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~q 62 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQ 62 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444 5566655443 34566778888888888888877777766644
No 324
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.45 E-value=56 Score=33.16 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++|-.+|..|.....+|+.+-..+.+++..|+.+-..+..+|..+
T Consensus 44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455544444444444443
No 325
>PRK10698 phage shock protein PspA; Provisional
Probab=74.26 E-value=66 Score=30.88 Aligned_cols=50 Identities=6% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+.++..|+.+...+...+..|+..+..|+.....++.+...+........
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666655444443
No 326
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.25 E-value=18 Score=39.63 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
++++|+.++..++.+...|..++..++.+++.+..+..
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333333
No 327
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.19 E-value=9.6 Score=39.11 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
++.+|+.+++.|+.++..|..++..++++..+|+.++..|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 9 RNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334567788888888888888888888888888888887775
No 328
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=74.03 E-value=34 Score=31.81 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 285 RRKQSNRESARRSRLRKQAEAEELSR-------KVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 285 RRk~rNRESARRSR~RKq~~~eeLe~-------rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
.+++.+-+.|...-.||++.++.|.. +++.++.+...+..++..++++++.+
T Consensus 131 ~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 131 DKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666655543 34555555555555555555444433
No 329
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=73.87 E-value=15 Score=29.54 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
+|+.....-+.+|..|..++..|.++.
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 330
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=73.80 E-value=62 Score=29.82 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE 325 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~e 325 (387)
+|+.+...+-+.|.+.|..=.+..++.+.++..-+.|-++++.+
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554444444444444444444444444
No 331
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.68 E-value=54 Score=32.77 Aligned_cols=15 Identities=13% Similarity=-0.121 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhhh
Q 016555 338 QENAALLVCHINVII 352 (387)
Q Consensus 338 ~EN~~Lr~~L~~l~~ 352 (387)
.|-..|.++|+.++.
T Consensus 225 dEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 225 DEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455554443
No 332
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.65 E-value=52 Score=35.44 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+++..+..++..++.++.+|..+++..++..+....+....+++|..
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~ 113 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSE 113 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554444443333333333334333
No 333
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=73.45 E-value=23 Score=37.04 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|+.++..|++++..|+.+...|.++|.+
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 334
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=73.35 E-value=9.8 Score=38.18 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
.-++.|+.+++.|++||.+|+.+++.|+.+++....-...+
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888887777776665544443333
No 335
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.32 E-value=37 Score=38.39 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDE 318 (387)
Q Consensus 306 eeLe~rV~~L~~E 318 (387)
++|+.+.+.|+.+
T Consensus 546 ~~l~~~~~~l~~~ 558 (771)
T TIGR01069 546 KELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 336
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=73.27 E-value=75 Score=29.38 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKS 324 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~ 324 (387)
|+.+....-+.|.+.+..=.+..++.+.++...+.|-..+..
T Consensus 63 R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 63 RQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555444433
No 337
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.13 E-value=62 Score=29.50 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016555 315 LIDENASLKSEI 326 (387)
Q Consensus 315 L~~EN~~L~~el 326 (387)
+..++..|+.++
T Consensus 89 ~~~~~~~l~~~l 100 (177)
T PF13870_consen 89 LSEELERLKQEL 100 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 338
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.04 E-value=41 Score=39.40 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
...|++|+.+++.|+.+...|...+.
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555544444444333
No 339
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=72.96 E-value=14 Score=36.68 Aligned_cols=55 Identities=31% Similarity=0.477 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCc---c-cCCCCC---CCCCCCCCCCCCCCCCCCC
Q 016555 48 YYNSPIASGHAPQPYMWGPAQPMMPPYGAPYA---A-IYSTGG---VYAHPAVPLGSHAHNHGVP 105 (387)
Q Consensus 48 ~f~s~vas~~~phPymWg~~qpmmpPyGtPy~---a-~yp~gg---vyaHP~~p~~~~p~~~~~~ 105 (387)
|.-++|.+++-+.+=|=|. |.||-|.|.+ . |+|++| .|.-|-||++.-|.+...|
T Consensus 140 ~gmpp~p~~~~~p~gmp~~---~ppp~g~pp~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~~p~ 201 (341)
T KOG2893|consen 140 YGMPPMPSGMMPPRGMPGA---YPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPM 201 (341)
T ss_pred cCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCccccCCCCCCCCCCCCcCcCCCCCCCCCCC
Confidence 4445555655556655554 5566666422 2 445443 5777777765444433333
No 340
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.95 E-value=22 Score=33.41 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+++++|+.--..|+.+....+..+..|..++.+|..+-..|+++|.
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455644444444433333333344444444444444444443333
No 341
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=72.91 E-value=50 Score=30.54 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 277 NERELKRERRKQSNRESARRSRLRKQ-----AEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESARRSR~RKq-----~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
-|+++.|.++-.+.|..++++|.--. ...++|+.-++-.+.|...++.+|+.+.
T Consensus 39 kEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vN 97 (159)
T PF04949_consen 39 KEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVN 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 35667777788888888888875321 2234444444444445555555554433
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=72.79 E-value=13 Score=40.57 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQL---S---ENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L---~---ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+++++++.||.+++.|+.+..+|..++..- . .+...|..|...++++|.++..++....
T Consensus 565 ~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 565 KLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334448889999999999888888877532 1 1567777888888888888777766543
No 343
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=72.78 E-value=31 Score=38.17 Aligned_cols=8 Identities=0% Similarity=-0.189 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 016555 100 HNHGVPTS 107 (387)
Q Consensus 100 ~~~~~~~s 107 (387)
|++..|.+
T Consensus 449 YGfVTMSt 456 (940)
T KOG4661|consen 449 YGFVTMST 456 (940)
T ss_pred eEEEEecc
Confidence 33333433
No 344
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.67 E-value=14 Score=35.43 Aligned_cols=28 Identities=39% Similarity=0.424 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
++.+.+-|..++..|+.|+..|+..+..
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3334444444555555555555544444
No 345
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.55 E-value=29 Score=39.16 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..|+.|..+++.+=.+|-+.|..|+.||-.|..++..+
T Consensus 79 ~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 79 KRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333344445555555555555555444
No 346
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.42 E-value=28 Score=43.26 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=56.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 287 k~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.++-.+.+++++.-=++.+..++++++.|++|+.+|+..+..+.+....++.|...+.++|..+..
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 445678899988888889999999999999999999999999888888888888888888877654
No 347
>PHA02109 hypothetical protein
Probab=72.34 E-value=10 Score=35.92 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.+++-+|+.+++.|..|..+|+.++..++
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R 220 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLR 220 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 348
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=72.30 E-value=1.2 Score=49.21 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHhH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 275 IQNERELKRERRKQSNR-ESA-RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 275 ~~dE~e~KR~RRk~rNR-ESA-RRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+.||-+.-|.+.-.-.| |+. .++| +|.+.+++|..+|+.|+.+|..|...+..|.++
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEee 354 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEE 354 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444433333 222 3444 677889999999999999998777766655544
No 349
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=72.29 E-value=31 Score=33.54 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 328 QLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 328 ~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
..+++++-|..-|++|+++|+-+..
T Consensus 232 k~~eei~fLk~tN~qLKaQLegI~a 256 (259)
T KOG4001|consen 232 KMKEEIEFLKETNRQLKAQLEGILA 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567777888888888888876543
No 350
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=72.26 E-value=17 Score=37.33 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L 329 (387)
.|+.+.+.|+.+...|..+++++
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 351
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.18 E-value=34 Score=39.99 Aligned_cols=45 Identities=31% Similarity=0.396 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 287 KQSNRESARRSRLRKQ------------AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 287 k~rNRESARRSR~RKq------------~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++-+|..|+...++.| .++++|++.+-.|+.||..|..+|..|..
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3345555655554433 56777777777778888888877777765
No 352
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=72.11 E-value=7.9 Score=30.42 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
++..|++.+..|+.|-..+ +..|-.|++.|+.+|..|.=+
T Consensus 4 qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~k 43 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFK 43 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccee
Confidence 4555666666666665442 222333444444444444433
No 353
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=72.08 E-value=73 Score=28.42 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=47.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhh
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---------ENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~---------ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+--++-|+|.||--++|.++ +.++.++..|.+....+...+..|. .++..|..+...++.+|..-..
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~ 110 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIA 110 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456688888886666555 6788888888777777777666663 4677777777777777766443
No 354
>PRK14143 heat shock protein GrpE; Provisional
Probab=72.07 E-value=12 Score=36.50 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el 326 (387)
+++|..++..|.++..-+|++.
T Consensus 83 ~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 83 LEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 355
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.88 E-value=31 Score=39.38 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
.+=+..+.+|..+++.|++.+.+|..+++.|++++..+.++..+|++++..+..++
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555555555555555555555555555555555544433
No 356
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=71.82 E-value=17 Score=39.22 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+|+..++.+..++..|+....+++.++..|+.+++.|..+-+.|+.+|+.
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666666666666655
No 357
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=71.63 E-value=16 Score=31.21 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
|-..+..+..++..|+.++..++.++..|...|..|..+|.++........
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~ 51 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQR 51 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
No 358
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.63 E-value=19 Score=36.25 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016555 292 ESARRSRLRKQAEAEELSRKV 312 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV 312 (387)
|+-+|-.. |..+|++|..++
T Consensus 79 es~~~l~d-RetEI~eLksQL 98 (305)
T PF15290_consen 79 ESENRLHD-RETEIDELKSQL 98 (305)
T ss_pred HHHHHHHh-hHHHHHHHHHHH
Confidence 34444333 234556665544
No 359
>PF15556 Zwint: ZW10 interactor
Probab=71.62 E-value=65 Score=31.37 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=52.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 288 ~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.+-+++..+.|.-.+++.-.-+..+..|..-..+++.+...-+++++.|..|...|+.+.......
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdK 177 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDK 177 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888777777777788888888888888888888888888988888888877665443
No 360
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.50 E-value=25 Score=30.40 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
...|+.+...-...|..+.+|++.|.=.|.+|-.++..+..++
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444443333
No 361
>PRK14143 heat shock protein GrpE; Provisional
Probab=71.50 E-value=21 Score=34.92 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVD 313 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~ 313 (387)
+|.++.++.+.+|+.
T Consensus 91 lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 91 MRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 362
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.49 E-value=26 Score=39.15 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Q 016555 288 QSNRESARRSRLRKQAE-----AEELSRKVDSLIDENASLKSEINQ----------------------------LSENSE 334 (387)
Q Consensus 288 ~rNRESARRSR~RKq~~-----~eeLe~rV~~L~~EN~~L~~el~~----------------------------L~ee~~ 334 (387)
+-+|...--.+.|+... ++++.++.+.|+.||..|+.++.. .+....
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e 562 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLE 562 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 016555 335 KLRQENAALLVCHINVII 352 (387)
Q Consensus 335 ~L~~EN~~Lr~~L~~l~~ 352 (387)
.|++||+.|++.|+.+.+
T Consensus 563 ~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 563 ELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHhc
No 363
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=71.42 E-value=25 Score=28.53 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
.+..|+.+-+.+.-|+-+|++++..+++|+..-.
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aL 42 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQELSHAL 42 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777788888888777777654433
No 364
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=71.40 E-value=7.7 Score=31.84 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
..|..||..|+.+|+.|+.+++++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666554444433
No 365
>PLN02678 seryl-tRNA synthetase
Probab=71.22 E-value=29 Score=36.92 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDENA----------SLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN~----------~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
...-+-|+.=+.++++|..+.+.+..+.. +|.+++..|++++..|+.+...|.++|.++.
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.19 E-value=41 Score=31.48 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
.++.++..|+.+...+...+..|+..+..|+.....|+.+...+......
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666665554433
No 367
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.18 E-value=42 Score=38.59 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRS 297 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRS 297 (387)
-++.+++-|.++|+-.-+.+
T Consensus 101 lk~~~sQiriLQn~c~~lE~ 120 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEM 120 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666665544443
No 368
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=71.17 E-value=8.7 Score=36.65 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 324 SEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.++..|..++..|..|+..|+.+|.
T Consensus 119 ~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 119 RQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 369
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.79 E-value=40 Score=37.92 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
+.+|+++++.|+..-..|..+++++
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333344433333
No 370
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.71 E-value=92 Score=29.54 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+..|+.+...++..+..|+..+..|+.+...++.+-..+.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333
No 371
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.63 E-value=20 Score=30.99 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 288 ~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
-+||.++|-.++-+..+-..| .-+.|+..|..+++.+.++...+..
T Consensus 56 sQNRq~~~dr~ra~~D~~inl-----~ae~ei~~l~~~l~~l~~~~~~~~~ 101 (108)
T PF06210_consen 56 SQNRQAARDRLRAELDYQINL-----KAEQEIERLHRKLDALREKLGELLE 101 (108)
T ss_pred HhhHhHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 357777664222222222222 2233445555555555444443333
No 372
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=70.56 E-value=24 Score=35.29 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHhHHHHH-HHHHHHH
Q 016555 282 KRERRKQSNRESAR-RSRLRKQ 302 (387)
Q Consensus 282 KR~RRk~rNRESAR-RSR~RKq 302 (387)
|-.=.-++|||..= .+|.||+
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~ 148 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRR 148 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhH
Confidence 33335567877653 3444444
No 373
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=70.41 E-value=17 Score=30.34 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
..++.|..-++.|++.|..|..++.+|-+.+.+.|.|..+..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888999999999999999998888877777655443
No 374
>PRK14140 heat shock protein GrpE; Provisional
Probab=70.38 E-value=24 Score=33.51 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+++|+.+++.|+.+..+|+.++.++.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~ 64 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQ 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333
No 375
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=70.27 E-value=11 Score=32.89 Aligned_cols=7 Identities=29% Similarity=0.173 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 016555 339 ENAALLV 345 (387)
Q Consensus 339 EN~~Lr~ 345 (387)
+++.|.+
T Consensus 94 KievLLD 100 (108)
T cd07429 94 KIEVLLD 100 (108)
T ss_pred HHHHHHH
Confidence 3333333
No 376
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.20 E-value=20 Score=31.35 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+.|+.+++.|+.....|..++..++++++.+......|.
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 377
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.17 E-value=74 Score=33.78 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
++++..|..+...|+.+...|..+...|..+.+.|.++...|.
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333333
No 378
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=70.13 E-value=34 Score=26.63 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
...|+.=|..|.++.. |.++++.|+.||..|+.-|++
T Consensus 22 ~~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 22 ENFLKRYNKVLLDRAA-LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666655554 445668899999999888765
No 379
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.13 E-value=17 Score=40.28 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 016555 331 ENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 331 ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
..++.|++||..|+++|..+.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 346678888888888886654
No 380
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=70.06 E-value=19 Score=39.06 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++++.+-.++.++..||..|..+|..|+++...++.|++.|.+-|..
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677777777777776666666666665554443
No 381
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=70.00 E-value=9.1 Score=33.96 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
++++.+...++++++++.|+.+..+|..+++.++
T Consensus 99 s~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 99 SARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445666777777777777766666654
No 382
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=69.93 E-value=28 Score=29.34 Aligned_cols=32 Identities=28% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.++.++..|+..+..|+.+|..|.++|.++..
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667778888888889999999998887653
No 383
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.78 E-value=67 Score=32.01 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.+-..++..|+.+|+.|.++......++..|.
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777766666666553
No 384
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.77 E-value=74 Score=31.86 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~e 331 (387)
.++..++.+...++.++..++.
T Consensus 203 ~~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 385
>PRK14155 heat shock protein GrpE; Provisional
Probab=69.72 E-value=14 Score=35.52 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDEN 319 (387)
Q Consensus 308 Le~rV~~L~~EN 319 (387)
|+.++..|.++.
T Consensus 32 lkd~~lR~~Aef 43 (208)
T PRK14155 32 LKDQALRYAAEA 43 (208)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 386
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=69.72 E-value=62 Score=31.80 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
.+.+..+..+++.|+.++..+.++++.+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 387
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.69 E-value=34 Score=34.53 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+-++.+++-..++..|+.||+.|...++.|.
T Consensus 50 KQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 50 KQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 4444444445556666666666665555443
No 388
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.65 E-value=24 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|..+++.+..++..|+.+...|+.+|.++.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 389
>PLN02320 seryl-tRNA synthetase
Probab=69.54 E-value=32 Score=37.17 Aligned_cols=60 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDENA---------SLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN~---------~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
...-.-|+.-+.++++|+.+.+.+..+.. +|+.++..|++++..|+.+...+.++|.++.
T Consensus 96 ~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 96 LELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.52 E-value=46 Score=37.54 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhh
Q 016555 310 RKVDSLIDENASLKSEINQLSE----------NSEKLRQENAALLVCHINV 350 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~e----------e~~~L~~EN~~Lr~~L~~l 350 (387)
+....|+.||-.|.++|..|++ ++.+|..|+..|+.+|+++
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788777777766643 4444555555555555544
No 391
>PRK06835 DNA replication protein DnaC; Validated
Probab=69.47 E-value=40 Score=34.20 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHhhhh
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ--L------SENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~--L------~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++-..++++++-.--=++..|..+...+.-++.. | ...++.|+.++..|+++..++..
T Consensus 20 ~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~ 86 (329)
T PRK06835 20 EELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLV 86 (329)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433333455555555544333322 2 34455666666666666655544
No 392
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.43 E-value=46 Score=30.32 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLID---ENASLKSEINQLSENSE 334 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~---EN~~L~~el~~L~ee~~ 334 (387)
+.++.+...+++.|+. .|..|+.+|..|+.++.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444444555554 44555555555555444
No 393
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=69.42 E-value=10 Score=38.21 Aligned_cols=30 Identities=37% Similarity=0.490 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
|+.+++.|+.+...|+.++..++++...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLR 33 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333
No 394
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=69.40 E-value=32 Score=36.09 Aligned_cols=41 Identities=32% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.|..+..+|++++..|.++...++.+...+...|-.+.++
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 34555555555555555555555555555555555544443
No 395
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.31 E-value=20 Score=29.79 Aligned_cols=34 Identities=38% Similarity=0.561 Sum_probs=18.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 293 SARRSRLRKQ----AEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 293 SARRSR~RKq----~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
|-++-|.||. .+++.|+.++..|..+|..|+.++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444443 345556666666666666666554
No 396
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=69.28 E-value=33 Score=28.31 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.+++|...|..|-....+|...++.++.+......|+.+-.++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 455677777777777777777777777777777777777777777654
No 397
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=69.23 E-value=22 Score=36.47 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|.|..+++++|+.+.+.|.++|...+..+..|...+..|..--.-|++.|..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 5677788899999999999999999999999988888877766666666543
No 398
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.23 E-value=32 Score=35.96 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+..|+.|..+|.++|+.-.++..+.+.+...|..+|++
T Consensus 141 t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777776666665555555555555544
No 399
>PRK14158 heat shock protein GrpE; Provisional
Probab=69.22 E-value=27 Score=33.20 Aligned_cols=16 Identities=6% Similarity=-0.280 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASL 322 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L 322 (387)
+|+.++..+.++..-+
T Consensus 58 el~d~~lR~~AefeN~ 73 (194)
T PRK14158 58 ANWDKYLRERADLENY 73 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 400
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=69.18 E-value=46 Score=29.26 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+.++.....++.++..-..|-.-=....+|+...+.||..|+..|..-.
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~ 62 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGN 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 3334444444444433333333333456677777888888888887543
No 401
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.14 E-value=15 Score=29.98 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.|+.+...|..++..|+.+...|..+...++.+|..+
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555555443
No 402
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.06 E-value=34 Score=26.98 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
+++..++.+++.++.+...|......+..+...+..+...|.+
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333333333333
No 403
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.04 E-value=34 Score=37.66 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 016555 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLV 345 (387)
Q Consensus 276 ~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe-------~rV~~L~~EN~~L~~el~~L~e---e~~~L~~EN~~Lr~ 345 (387)
+.|+-.+.--....+....---|+|=+.++.++. .....|+.||-.|.+.+..|+. +++.|+.||..|.+
T Consensus 129 E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleE 208 (772)
T KOG0999|consen 129 ENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEE 208 (772)
T ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhh
Q 016555 346 CHINVIIFWTVS 357 (387)
Q Consensus 346 ~L~~l~~~~~~~ 357 (387)
++.-+.....+.
T Consensus 209 e~elln~q~ee~ 220 (772)
T KOG0999|consen 209 ETELLNSQLEEA 220 (772)
T ss_pred HHHHHHHHHHHH
No 404
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=68.92 E-value=25 Score=28.47 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQEN---AALLVCHI 348 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN---~~Lr~~L~ 348 (387)
|...|+.|..|+.+|..++..+++++..++.+. ..|+..++
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~e 44 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYE 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766665544 44444433
No 405
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.81 E-value=53 Score=38.46 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++.|+.|..+|..++..++.++..++.+.+.|+.++..+.+.....
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444555555555555555555555555555555544333
No 406
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=68.72 E-value=41 Score=33.44 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (387)
Q Consensus 288 ~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~ 335 (387)
+.-|+-|.+-|..=|.++++|+++-.+..-...-|+.++..|-++|..
T Consensus 43 Qas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 43 QASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 344445555555555666666665555555555677777777666544
No 407
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.66 E-value=10 Score=33.25 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+++|-|..++..|+..|..|++|...|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 408
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=68.60 E-value=16 Score=29.97 Aligned_cols=33 Identities=42% Similarity=0.488 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
...+..+.+.|..++..|++++..|+.|...|.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444445555555555555544444
No 409
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=68.53 E-value=37 Score=35.55 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 324 SEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.++..|.+.+..|..+...|+++|..+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 410
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=68.48 E-value=26 Score=29.45 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.|+.....|..++..|..+.+.|..+...|+.+|.++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555543
No 411
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.44 E-value=51 Score=39.09 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
-.+++..+..|+..+..++.|..++..++..|+.+...|......|++++.++
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333333444444443
No 412
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.24 E-value=53 Score=36.76 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhhh
Q 016555 338 QENAALLVCHINVII 352 (387)
Q Consensus 338 ~EN~~Lr~~L~~l~~ 352 (387)
.++.+|+.+|.++.+
T Consensus 300 ~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 300 EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHhhc
Confidence 455566666666554
No 413
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=68.09 E-value=13 Score=35.35 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 016555 303 AEAEELSRKVDSLIDEN----ASLKSEI-NQLSENSEKLRQENAALLVCHINVIIFWTVSLFSN 361 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN----~~L~~el-~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~ 361 (387)
.+++++|.+++.|..-. +.++.++ +..++.+..|+.|+..-|.+|.+.+.......|+.
T Consensus 48 keW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV~a~Lne 111 (193)
T PF12925_consen 48 KEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRVQAMLNE 111 (193)
T ss_dssp HHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777887777776443 2334433 46777888899999999999988777665555443
No 414
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=68.06 E-value=7.4 Score=37.13 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
||...+.|+.+...|+.+...|+.+...|+.|...++..+..
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 344444455555555555555555555555555555555544
No 415
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=68.01 E-value=34 Score=34.17 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~-------~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
.++.++|.+|+.|+--|..|..++. .+.+.-.++++|...|.++|..+..+.+..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~ 278 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEM 278 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5678899999999999999999884 455566778888888888887765544433
No 416
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.00 E-value=48 Score=33.75 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
+.+...++..|++||..|..++..-++..++|+.|....+.+|.........
T Consensus 58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dq 109 (305)
T PF14915_consen 58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQ 109 (305)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344567889999999999999988899999999999999999887665443
No 417
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=67.95 E-value=11 Score=30.94 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+|..+..+|++++.+|++|...++..
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555444444444443
No 418
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.91 E-value=43 Score=34.07 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 291 RESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
-|+++|-....+.++.+++.....-+........+-+.|++.+.+|.+||.-|+.+|...+..
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444444455556677788888888888888888876553
No 419
>PRK14139 heat shock protein GrpE; Provisional
Probab=67.75 E-value=23 Score=33.39 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRK 311 (387)
Q Consensus 300 RKq~~~eeLe~r 311 (387)
|-+++++.+.+|
T Consensus 57 R~~AefeN~rKR 68 (185)
T PRK14139 57 RAKAETENVRRR 68 (185)
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 420
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.66 E-value=50 Score=35.32 Aligned_cols=56 Identities=23% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
-+.|++.++..+..|++.|+.||-+ .+++.|.+++..|+.....|+.....+..+.
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567777777778888888777644 4466677777777777777776666554433
No 421
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=67.56 E-value=30 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 323 KSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 323 ~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+.++..++.+++.++.+...++.++
T Consensus 108 ~~~~~~~~~~l~~~~~~l~~~~~~~ 132 (322)
T TIGR01730 108 KAAVEAAQADLEAAKASLASAQLNL 132 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333444444444333
No 422
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=67.40 E-value=53 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 325 EINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 325 el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.+..|-.++..|+.|...|..+|..++..
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777666554
No 423
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.30 E-value=6.4 Score=41.64 Aligned_cols=39 Identities=36% Similarity=0.527 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
++|..+|..|.++|..|+.+++.|+-+|..+..||+-|+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~ 84 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLL 84 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhh
Confidence 344555555555555555555555555555555554443
No 424
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.25 E-value=36 Score=37.54 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++++|+.+++.|..+...|..++..|+.++.++..|....+.++.++..
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555544444444444433
No 425
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=67.22 E-value=45 Score=30.54 Aligned_cols=50 Identities=28% Similarity=0.184 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLS-------ENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~-------ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
.+++..|..|+.+....+.|+..|+ +..+.|..+...|+++|+.....+.
T Consensus 57 ~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 57 CEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555543 3556677777777777776555443
No 426
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.11 E-value=32 Score=33.73 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 296 RSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.|.-+|..++.++.-+..++.+...|..++..|+.+.+.. ++.|+.++++.
T Consensus 156 k~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf 207 (243)
T cd07666 156 KRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33445555555555555555555556666666655554443 44455555544
No 427
>PRK14158 heat shock protein GrpE; Provisional
Probab=67.01 E-value=21 Score=34.00 Aligned_cols=24 Identities=4% Similarity=0.086 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
++|+.+++.|+.....|.++++.+
T Consensus 50 ~~le~e~~el~d~~lR~~AefeN~ 73 (194)
T PRK14158 50 AAKEAEAAANWDKYLRERADLENY 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333333
No 428
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=66.99 E-value=13 Score=40.06 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 315 LIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 315 L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|+.+|..|.+++.+|.+.+.+.+.|...|+++|.++..
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444444455555555666667777766644
No 429
>PF14645 Chibby: Chibby family
Probab=66.94 E-value=16 Score=31.91 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
..|+.+++.|++|+..|+-+++.|.+-|.
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444443333
No 430
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=66.93 E-value=21 Score=29.91 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSR------KVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 303 ~~~eeLe~------rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
++++-|+. +|...-.||..|+.++.+|+.-+
T Consensus 31 eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 31 EEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 34456667777777777776544
No 431
>COG4420 Predicted membrane protein [Function unknown]
Probab=66.93 E-value=25 Score=33.51 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|..++..|+...--++.|+..|++.|.++..
T Consensus 138 ~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~ 169 (191)
T COG4420 138 ALHEKLDELRLDLGYVRDELDDLRELLAEIEP 169 (191)
T ss_pred HHHHHHHHHHHhcchhhhchHHHHHHHHHhCc
Confidence 33334443333333344444444444444433
No 432
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=66.87 E-value=13 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+..++.+|++++.+|+.||+.|+..+.-
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555556666666665543
No 433
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=66.67 E-value=50 Score=26.73 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
++++++.++.|+.+...+..|+..+-++...+........+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~ 68 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLE 68 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333333333
No 434
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.51 E-value=32 Score=31.38 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKS---EINQLSENSEKLRQENA 341 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~---el~~L~ee~~~L~~EN~ 341 (387)
.++++.|+.++.....+...|+. -++.|+.+++.|..+|.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555 45555556666666665
No 435
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.50 E-value=48 Score=33.34 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCc
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEIN------QLSENSEKLRQENAALLVCHINVIIFWTVSLFSNEANRS 366 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~------~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~ 366 (387)
|.+++.++..+|..|+.+-+--..++. .+...+.+|..|...-+.+|+++..++..-.|-....++
T Consensus 141 kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tG 212 (330)
T KOG2991|consen 141 KEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTG 212 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcch
Confidence 445666677777766665432222222 224566778888888888888887777766665554444
No 436
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=66.47 E-value=38 Score=32.36 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
+++..-.|...|+..+++|++++++|
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqEL 74 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQEL 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 437
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=66.35 E-value=28 Score=36.47 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 317 DENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 317 ~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..-..|+.....|.+++.+|+.+...|+++|+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777788888888888888888888877
No 438
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=66.30 E-value=98 Score=27.66 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLK 323 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~ 323 (387)
++.+..++..|+..+..|+
T Consensus 57 ~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 439
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=66.26 E-value=59 Score=26.79 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+|..++...+.|+..|..-+..|+.++.+....|..|..++.....
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666666655444
No 440
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=66.25 E-value=56 Score=25.36 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEIN--------------QLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~--------------~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+++.|+.+++.|+.+...+..++. .-+++...+..+...|.+.|..+
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555544442 22344455555555555555543
No 441
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=66.23 E-value=20 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
+++|+.++..|++|...++.++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666665555555554443
No 442
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.11 E-value=44 Score=35.50 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccee
Q 016555 333 SEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFV 370 (387)
Q Consensus 333 ~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~ 370 (387)
+..|.+-|..|..+|.+....+...+......+.|-.-
T Consensus 465 nQELnaHNQELnnRLaaEItrLRtlltgdGgGtGspla 502 (593)
T KOG4807|consen 465 NQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLA 502 (593)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccc
Confidence 33344444444444444444444444444444555443
No 443
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=66.08 E-value=24 Score=30.21 Aligned_cols=28 Identities=43% Similarity=0.569 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
.+-|.+++..|+.+|..|..++..++.+
T Consensus 17 a~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 17 AELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555543
No 444
>PRK14163 heat shock protein GrpE; Provisional
Probab=66.02 E-value=22 Score=34.39 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVD 313 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~ 313 (387)
+|-+++++.+.+|++
T Consensus 64 lR~~AEfeN~rkR~~ 78 (214)
T PRK14163 64 QRLQAEYQNYRRRVE 78 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555544443
No 445
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.99 E-value=22 Score=41.15 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
....|..+++.+..|+.+|+..-+.|+++.+.+++.+..|++++....|
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG 445 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG 445 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666777777777777777777777777777777777766544
No 446
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=65.94 E-value=1.2e+02 Score=29.73 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENAS 321 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~ 321 (387)
|+.+...+-+.|.+.|..=++..++.+.++..++.+-..
T Consensus 37 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 75 (250)
T PRK14474 37 RQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555554444444444444444444444333
No 447
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=65.81 E-value=14 Score=36.58 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEIN----QLSENSEKLRQE 339 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~----~L~ee~~~L~~E 339 (387)
+|+++-+.|++|+.+|+.++. +|++|+++|+..
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333222 255555555543
No 448
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=65.78 E-value=27 Score=29.32 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+.|++||+.|+.|....+.+ .+|...+.+-++
T Consensus 31 ~~~kL~~en~qlk~Ek~~~~~q-----vkn~~vrqknee 64 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAVAETQ-----VKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHH
Confidence 3555555555555555544333 234455544443
No 449
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.76 E-value=54 Score=38.52 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
..-..+++|...+...|...+..+.+.-.+|...+..|+..+..++.+-..|..+|....+.+-+..
T Consensus 412 k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das 478 (1141)
T KOG0018|consen 412 KQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDAS 478 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 3344556677777777888888888887788777777777777777776666666666655554444
No 450
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.58 E-value=41 Score=35.20 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.|.++..+|++++..|.++...|+.+...+...|-.+.+
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~ 111 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444444455555555555555555555555555444433
No 451
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=65.55 E-value=69 Score=38.23 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
.+..+.+.++..++++...|..++..|+++.+.+..+|..+
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555554444444
No 452
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=65.53 E-value=49 Score=33.14 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLV 345 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~--~~L~~EN~~Lr~ 345 (387)
.+..|++++..+++++.....+|..++++. +.+..+...|++
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E 209 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIE 209 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777766553 223344444444
No 453
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=65.46 E-value=52 Score=29.45 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=4.8
Q ss_pred ccccccccccc
Q 016555 374 FCCNLLIGLTY 384 (387)
Q Consensus 374 f~~n~l~~~~y 384 (387)
.||.+.+|-.|
T Consensus 102 ~~v~V~vGD~~ 112 (131)
T PF11068_consen 102 SFVEVKVGDNW 112 (131)
T ss_dssp EEEEE-TTSBH
T ss_pred EEEEEecCCCh
Confidence 44555555444
No 454
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=65.36 E-value=30 Score=37.08 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 016555 275 IQNERELKRERRKQSNRESARRSR--------LRKQAE---AEELSRKVDSLIDENASLKS 324 (387)
Q Consensus 275 ~~dE~e~KR~RRk~rNRESARRSR--------~RKq~~---~eeLe~rV~~L~~EN~~L~~ 324 (387)
++-|+-.+|.||.+..|.++=+-+ +|-|.+ |-.|+.-...|+.+|++|++
T Consensus 47 lqkEel~rr~rr~e~er~slm~~~g~l~ndvnrrlQ~hl~eir~lK~~nqKlq~~nqElrd 107 (513)
T KOG3819|consen 47 LQKEELQRRLRRAEAERVSLMLAHGGLMNDVNRRLQQHLGEIRGLKDANQKLQQDNQELRD 107 (513)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 456677788888888888875432 233333 33455556667777777665
No 455
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.25 E-value=31 Score=34.13 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016555 305 AEELSRK 311 (387)
Q Consensus 305 ~eeLe~r 311 (387)
+++|+.+
T Consensus 73 v~~~~~~ 79 (247)
T COG3879 73 VEDLENK 79 (247)
T ss_pred HHHHHHH
Confidence 3333333
No 456
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=65.21 E-value=59 Score=40.26 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 278 ERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 278 E~e~KR~RRk~rN-RESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
++++.++|+++.+ +.=.|..+.-+...+.++..+|+.+..++..|...+..++..+..|+.+...|..+|+....+
T Consensus 811 ~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 811 ERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566666555 344556666667778888889999999999999999999999999999998888888876543
No 457
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.08 E-value=83 Score=31.01 Aligned_cols=82 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 272 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 272 e~~~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|..++++ .+|...+-..=.|---+++++.+.|.+.+.+.+.|...--.-+++-......+++|...++++|+.+.
T Consensus 32 D~f~q~~-----r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~ 106 (246)
T KOG4657|consen 32 DSFIQSP-----RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLR 106 (246)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhc
Q 016555 352 IFWTVSL 358 (387)
Q Consensus 352 ~~~~~~~ 358 (387)
.-.....
T Consensus 107 ~n~Q~lk 113 (246)
T KOG4657|consen 107 RNLQLLK 113 (246)
T ss_pred HHHHHHH
No 458
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=65.04 E-value=31 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 326 INQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+..|.++...|+.+...+..+|++
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444433
No 459
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.88 E-value=1.3e+02 Score=28.74 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.++.++..|+........+...+...+..|..++..|..+|.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 460
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=64.79 E-value=22 Score=36.59 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
..|..+|+.|+.....|..++..+.+....++.++..|.++|.++.....-..
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 46677777777777777777777777777777778888888887766544443
No 461
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=64.72 E-value=27 Score=37.10 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 016555 291 RESARRSRLRKQ 302 (387)
Q Consensus 291 RESARRSR~RKq 302 (387)
+.+++++|+|++
T Consensus 301 ~~~~~~~~~~~~ 312 (429)
T PRK00247 301 KKAFLWTLRRNR 312 (429)
T ss_pred HHHHHHHHHhcc
Confidence 334555555443
No 462
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.61 E-value=58 Score=38.18 Aligned_cols=68 Identities=22% Similarity=0.103 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+-.+.||+--...-+++-..+++|-.+.-.|+.++..|..+++.|.+++.++...+..|...-+.+.
T Consensus 375 lkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~ 442 (1195)
T KOG4643|consen 375 LKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ 442 (1195)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666655555566666666666666666666666666666666666665555555554444433
No 463
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=64.43 E-value=35 Score=35.04 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Q 016555 300 RKQAEAEELSRK-VDSLIDENASL 322 (387)
Q Consensus 300 RKq~~~eeLe~r-V~~L~~EN~~L 322 (387)
.|-+++.+|+.. ...+..+...|
T Consensus 25 qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 25 QKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 33344333333
No 464
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.43 E-value=72 Score=37.48 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
......++++|+.|.+.|+.++..|++.+.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666655
No 465
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=64.41 E-value=21 Score=37.98 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
.++|+..++.|+.+|.+|+..++.|++.+..++.+.-.||..+..+.-+.
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~ 457 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEEN 457 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555556666666666666666666666666666666666655544433
No 466
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=64.32 E-value=18 Score=36.24 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
|+--+-+++.|..+|..|+..|.+|++++...++.++.|+.
T Consensus 73 ~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 73 RQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 467
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=64.31 E-value=10 Score=33.56 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 326 INQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++|..++.+|+.||..||.+|..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
No 468
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=64.31 E-value=52 Score=33.29 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 279 RELKRERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 279 ~e~KR~RRk~rNRESARRSR~RKq~~~eeLe-------~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.+.+..-++.+-+=-.+-|..||-+++.|| ++|+.-+.+...|+.++..|.+.|+.|+.-...|--+|.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
No 469
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=64.29 E-value=27 Score=31.38 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
...++.|+.+++..+...+.-...|..|+..+..+..+++.+..++..+..
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
No 470
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.24 E-value=58 Score=35.83 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++..+..+.--.+-++-|+-+.+=+.-+..++.-+..++..++.+..++..|+.+++..+.|+..|+.+...|.......
T Consensus 248 ~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 248 EEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred cccc
Q 016555 358 LFSN 361 (387)
Q Consensus 358 ~l~~ 361 (387)
.+..
T Consensus 328 ~iS~ 331 (581)
T KOG0995|consen 328 GISG 331 (581)
T ss_pred CCCH
No 471
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=64.22 E-value=53 Score=38.88 Aligned_cols=88 Identities=22% Similarity=0.140 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
.+++....+.....-+.|+.......+.+..|+.+...++.+..+...++..++.+...++.+...|...|.-..+-+..
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~ 543 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLE 543 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHH
Q ss_pred hcccccCC
Q 016555 357 SLFSNEAN 364 (387)
Q Consensus 357 ~~l~~~~~ 364 (387)
.+-.+..+
T Consensus 544 fL~~~~p~ 551 (1201)
T PF12128_consen 544 FLRKNKPG 551 (1201)
T ss_pred HHHhCCCc
No 472
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=64.21 E-value=66 Score=30.20 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 283 RERRKQSNRESARRSRLRKQA----------------------------------EAEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~----------------------------------~~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
|.+-...=-.+++....+|++ ++..|+.+.+.|+.++..|+.+...
T Consensus 57 rk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 57 RKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 016555 329 LSENSEKLRQENAALL 344 (387)
Q Consensus 329 L~ee~~~L~~EN~~Lr 344 (387)
+++.+..|..-.+.-|
T Consensus 137 ~~eDy~~Li~Im~rar 152 (170)
T PRK13923 137 TEEDYRALIVIMNRAR 152 (170)
T ss_pred HHHHHHHHHHHHHHHH
No 473
>PRK14160 heat shock protein GrpE; Provisional
Probab=64.12 E-value=34 Score=32.96 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCC
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLFSNEANR 365 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~ 365 (387)
+.+++.|+.+++.|+.+...|+.++.+++.+++.++.....=++++...........|-.+...
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
No 474
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=64.08 E-value=14 Score=39.94 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.+..|+.+|..|.+++.+|.+.+.+.+.|...|+++|.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 2 DLRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 475
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=64.06 E-value=40 Score=31.19 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENS-EKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~-~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+.++++|+.+++.|...-..+.+++.-+..++ +.++.+...|.+++..+.......
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=64.05 E-value=82 Score=30.72 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
........++.+.|..|..-..|=+......+..-..|..+...+..++..|.++......|...|+.+|.......
T Consensus 43 k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 43 KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.05 E-value=1.3e+02 Score=28.88 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
..+.+...-+-+-.-...-...|..|..++...+........++..|..++..|..+....+.+...+..++
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=64.04 E-value=22 Score=33.08 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+.+.++|+.|...+..||..|++-+...+..-..||.+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 479
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=63.98 E-value=1.4e+02 Score=28.47 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN-----QLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~-----~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
.+|+.|...+-+.|.+.|..=.+.+.+.+.++..-+.+-+.+..+.. ...+...+++.|...+.++.+.......
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek 162 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIK 162 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 016555 356 VS 357 (387)
Q Consensus 356 ~~ 357 (387)
..
T Consensus 163 ~~ 164 (204)
T PRK09174 163 AK 164 (204)
T ss_pred HH
No 480
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=63.98 E-value=30 Score=32.73 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+.=.|++++.|+++|..|+.+++.|.+ .-.+|+.+-.++.++.-.+...
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL~a 90 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALLAA 90 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC
No 481
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.97 E-value=58 Score=28.64 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLFSNE 362 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~ 362 (387)
+-|...++......|+++++..+.|....+++|..==.+..+|..+...==.+|.+.....+..+++..
T Consensus 16 ~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll~~~ 84 (128)
T PF06295_consen 16 IGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELLPDE 84 (128)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=63.90 E-value=71 Score=38.46 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Q 016555 279 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS--------ENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 279 ~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~--------ee~~~L~~EN~~Lr~~L~~l 350 (387)
....+........+.++.-+.+.++++++|+.+++.|+.+...|+.++..|+ +++.+|+.+...+...+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~ 352 (1353)
T TIGR02680 273 SAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADA 352 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhh
Q 016555 351 IIFWTVS 357 (387)
Q Consensus 351 ~~~~~~~ 357 (387)
.......
T Consensus 353 ~~~~~~a 359 (1353)
T TIGR02680 353 RQAIREA 359 (1353)
T ss_pred HHHHHHH
No 483
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=63.79 E-value=66 Score=24.78 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDE----NASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~E----N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..-.+..++.-+.-.+--..++..++.|....+.|... ...++.++..|...+..|......-+..|++
T Consensus 33 ~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 33 LEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
No 484
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=63.75 E-value=53 Score=32.81 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDE------NASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~E------N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+|++..-++ +.++++.-+|--.-+ .++..|+.++..|+.+ +..++....++..+...|+.++..|+.+|.+.
T Consensus 151 ~ekd~~i~~-~~~~~e~d~rnq~l~-~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~a 228 (264)
T PF07246_consen 151 EEKDQLIKE-KTQERENDRRNQILS-HEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDA 228 (264)
T ss_pred HHHHHHHHH-HhhchhhhhHHHHHH-HHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q ss_pred hhhhhhhcccc
Q 016555 351 IIFWTVSLFSN 361 (387)
Q Consensus 351 ~~~~~~~~l~~ 361 (387)
...-.....+.
T Consensus 229 K~~~~~~~~~~ 239 (264)
T PF07246_consen 229 KEDMIRLRNDI 239 (264)
T ss_pred HHHHHHHHhcc
No 485
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.72 E-value=32 Score=36.66 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENAS----LKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~----L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.+++.|+.+|+.|+..... ...++.++.+|-...+.||.+|..+|......
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELER 307 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 486
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=63.65 E-value=32 Score=36.44 Aligned_cols=67 Identities=27% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN----------QLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~----------~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
|+ ++|+-|..|-.-+-..+-+++.+|..|+.+...|++-|+ .|++++...+.+...|+++...+..+
T Consensus 397 rk-kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~e 473 (486)
T KOG2185|consen 397 RK-KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNE 473 (486)
T ss_pred hh-hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 487
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=63.64 E-value=27 Score=39.30 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+++++.-..|...++.|+..++.+++.|+.++.+|+.|.+.+|.++++...+.
T Consensus 717 ~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ 769 (961)
T KOG4673|consen 717 SKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEV 769 (961)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 488
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=63.50 E-value=24 Score=38.98 Aligned_cols=60 Identities=18% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLFSNE 362 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~ 362 (387)
+.+++|..+-+.|+.|+...++--..|++++.+|+.|...+|+++.....+.....-+-+
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddi 388 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDI 388 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
No 489
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.47 E-value=62 Score=38.61 Aligned_cols=76 Identities=26% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
..+.+..+-++.| +-..|..-+.++++|..+++.|..+...|..++..|..+...+..+...|+.+..........
T Consensus 866 i~el~~~klkl~~---~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1311)
T TIGR00606 866 TNELKSEKLQIGT---NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQD 941 (1311)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=63.36 E-value=26 Score=29.61 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
++.|+++++.|+.+...|..++..+++++..|+.+.+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=63.32 E-value=80 Score=35.84 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN-QLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~-~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
++-.+.++..+.-++.+.+-+..=++..++|+.+.+.|+.+-..+..+.. ++++.+.+.+.|.+.|..+|++
T Consensus 523 ~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.29 E-value=43 Score=31.80 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQL---------SENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L---------~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
...+..|+.++..|+.++.....+|..| +++...|+.|.+..+++|..+..
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK14162 heat shock protein GrpE; Provisional
Probab=63.25 E-value=13 Score=35.39 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++-.+...++..|+.+...|+.++..|+.++.++.+|...+|.++..
T Consensus 31 ~~~~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 31 KEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=63.24 E-value=54 Score=30.58 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN---QLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~---~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+...+..+...+-+..-..--.+--.-++++.+++..|+.++..|...+. .+.+....+..+...+++.|+...|
T Consensus 86 ~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~Iig 163 (163)
T PF03233_consen 86 ESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKIIG 163 (163)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcC
No 495
>PRK01156 chromosome segregation protein; Provisional
Probab=63.14 E-value=72 Score=36.08 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+.+....+..+..-+..+..=....+.+++++.+...|+.+...|...+..|..++..|+.+...|+++|..+....
T Consensus 649 ~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~ 725 (895)
T PRK01156 649 RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETL 725 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 496
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.02 E-value=32 Score=34.02 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Q 016555 287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR----QENAALLVCHINVI 351 (387)
Q Consensus 287 k~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~----~EN~~Lr~~L~~l~ 351 (387)
...+++.-+.--.|+.+.+ .|..++..++++-.+|..|++.|+......+ .-++.|.++|+.+.
T Consensus 35 ~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 35 LAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
No 497
>PHA03155 hypothetical protein; Provisional
Probab=62.97 E-value=9.8 Score=33.48 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 326 INQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++|..++.+|+.||..|+.+|.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
No 498
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.82 E-value=68 Score=35.46 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEE----LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~ee----Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+-|+|..|-.+.|..+-+.+-.++...+.+ ++.+.-.|+.|..+++-+-.+|-.+|..|+.||-.|..++..+.+
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
No 499
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.70 E-value=33 Score=33.10 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCccceec
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL--SENSEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFVC 371 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L--~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~~ 371 (387)
+++.+++.|++.|+.+-..|++-+++- .++..+++.|...++.+|+.+.+......-.....+....+.
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~ 202 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLY 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEE
No 500
>PRK14147 heat shock protein GrpE; Provisional
Probab=62.60 E-value=29 Score=32.25 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCC
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLFSNEANR 365 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~ 365 (387)
..++|+.+++.|+.+..+|+.++.++..+++.++.....=++++.....+.....|-.+...
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~Dn 80 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDS 80 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Done!